BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041215
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670
PE=2 SV=2
Length = 349
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 118/136 (86%), Positives = 128/136 (94%)
Query: 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
VGSIEGRVGVHHLDDSQQSKNFTFKCHRDG++IYSVNSLNFHP+H TFATAGSDGAFNFW
Sbjct: 214 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFW 273
Query: 61 DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
DKDSKQRLKAMSRC QPIPCS+FN DGSI+AY+ CYDWSKGAENHNPATAK+ I+LHLPQ
Sbjct: 274 DKDSKQRLKAMSRCNQPIPCSSFNHDGSIYAYAACYDWSKGAENHNPATAKSSIFLHLPQ 333
Query: 121 ETEVKGKPRAGTSGRK 136
E+EVK KPR G +GRK
Sbjct: 334 ESEVKAKPRVGATGRK 349
>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rae1 PE=1 SV=1
Length = 352
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 92/135 (68%), Gaps = 5/135 (3%)
Query: 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRD----GSEIYSVNSLNFHPIHHTFATAGSDGA 56
+GS+EGR + ++D+ S+NF+F+CHR+ +++YSVNS+ FHP + TF+TAGSDG
Sbjct: 218 IGSVEGRCAIQNIDEKNASQNFSFRCHRNQAGNSADVYSVNSIAFHPQYGTFSTAGSDGT 277
Query: 57 FNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYL 116
F+FWDKDS QRLK+ G I CSTFN G IFAY++ YDWSKG +N A I L
Sbjct: 278 FSFWDKDSHQRLKSYPNVGGTISCSTFNRTGDIFAYAISYDWSKGYTFNN-AQLPNKIML 336
Query: 117 HLPQETEVKGKPRAG 131
H + E+K +P+ G
Sbjct: 337 HPVPQDEIKPRPKKG 351
>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1
Length = 368
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 89/137 (64%), Gaps = 12/137 (8%)
Query: 1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
+GSIEGRV +H+++ +K NFTFKCHR +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTTAPQDIYAVNGIAFHPVHGTLATVG 292
Query: 53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
SDG F+FWDKD++ +LK + QPI +FN +G+IFAYS YDWSKG E +NP K
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACSFNHNGNIFAYSSSYDWSKGHEFYNPQ-KKN 351
Query: 113 YIYLHLPQETEVKGKPR 129
YI+L E + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365
>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2
Length = 368
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 90/137 (65%), Gaps = 12/137 (8%)
Query: 1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
+GSIEGRV +H+++ +K NFTFKCHR +IY+VN+++FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVG 292
Query: 53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
SDG F+FWDKD++ +LK + QPI FN +G+IFAY+ YDWSKG E +NP K
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQ-KKN 351
Query: 113 YIYLHLPQETEVKGKPR 129
YI+L E + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365
>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1
Length = 368
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)
Query: 1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
+GSIEGRV +H+++ +K NFTFKCHR +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292
Query: 53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
SDG F+FWDKD++ +LK + QPI FN +G+IFAY+ YDWSKG E +NP K
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPIAACCFNHNGNIFAYASSYDWSKGHEFYNP-QKKN 351
Query: 113 YIYLHLPQETEVKGKPR 129
YI+L E + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365
>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1
Length = 368
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)
Query: 1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
+GSIEGRV +H+++ +K NFTFKCHR +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292
Query: 53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
SDG F+FWDKD++ +LK + QPI FN +G+IFAY+ YDWSKG E +NP K
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKN 351
Query: 113 YIYLHLPQETEVKGKPR 129
YI+L E + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365
>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1
Length = 368
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)
Query: 1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
+GSIEGRV +H+++ +K NFTFKCHR +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292
Query: 53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
SDG F+FWDKD++ +LK + QPI FN +G+IFAY+ YDWSKG E +NP K
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKN 351
Query: 113 YIYLHLPQETEVKGKPR 129
YI+L E + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365
>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1
Length = 368
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)
Query: 1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
+GSIEGRV +H+++ +K NFTFKCHR +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292
Query: 53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
SDG F+FWDKD++ +LK + QPI FN +G+IFAY+ YDWSKG E +NP K
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKN 351
Query: 113 YIYLHLPQETEVKGKPR 129
YI+L E + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365
>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1
Length = 368
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)
Query: 1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
+GSIEGRV +H+++ +K NFTFKCHR +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292
Query: 53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
SDG F+FWDKD++ +LK + QPI FN +G+IFAY+ YDWSKG E +NP K
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKN 351
Query: 113 YIYLHLPQETEVKGKPR 129
YI+L E + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365
>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1
Length = 368
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)
Query: 1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
+GSIEGRV +H+++ +K NFTFKCHR +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292
Query: 53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
SDG F+FWDKD++ +LK + QPI FN +G+IFAY+ YDWSKG E +NP K
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP-QKKN 351
Query: 113 YIYLHLPQETEVKGKPR 129
YI+L E + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365
>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1
Length = 368
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)
Query: 1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
+GSIEGRV +H+++ +K NFTFKCHR +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292
Query: 53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
SDG F+FWDKD++ +LK + QP+ FN +G+IFAY+ YDWSKG E +NP K
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPVAACGFNHNGNIFAYASSYDWSKGHEFYNP-QKKN 351
Query: 113 YIYLHLPQETEVKGKPR 129
YI+L E + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365
>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GLE2 PE=1 SV=1
Length = 365
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 13/141 (9%)
Query: 1 VGSIEGRVGVHHLDDSQQSKN-FTFKCHRDG-----------SEIYSVNSLNFHPIHHTF 48
+GS+EGR + ++DD Q K+ F+FKCHR S +Y VNS+ FHP++ TF
Sbjct: 225 IGSVEGRCSIRYIDDGMQKKSGFSFKCHRQTNPNRAPGSNGQSLVYPVNSIAFHPLYGTF 284
Query: 49 ATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPA 108
TAG DG FNFWDK+ + RLK IP +FN +GS+FAY++ YDW +G + P
Sbjct: 285 VTAGGDGTFNFWDKNQRHRLKGYPTLQASIPVCSFNRNGSVFAYALSYDWHQGHMGNRPD 344
Query: 109 TAKTYIYLHLPQETEVKGKPR 129
I LH + EVK K +
Sbjct: 345 YPNV-IRLHATTDEEVKEKKK 364
>sp|Q93454|NPP17_CAEEL Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17 PE=1 SV=1
Length = 373
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS------EIYSVNSLNFHPIHHTFATAGSD 54
+GSIEGRV V ++D + NFTFKCHR EIY+VN + FHP H T T GSD
Sbjct: 240 LGSIEGRVAVQYVDVANPKDNFTFKCHRSAELVNGFQEIYAVNDICFHPQHGTLVTIGSD 299
Query: 55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYI 114
G ++ WDKD++ +LK P+ C ++ G+ Y++ YDWS+G E + +K I
Sbjct: 300 GRYSMWDKDARTKLKTSEPHPMPLTCCDVHSSGAFLVYALGYDWSRGHEGNTQPGSKIVI 359
Query: 115 Y 115
+
Sbjct: 360 H 360
>sp|O42860|BUB3_SCHPO Mitotic checkpoint protein bub3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=bub3 PE=1 SV=1
Length = 320
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 3 SIEGRVGVHHLDDSQ--QSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSDGA 56
SIEGR V +++ SQ QSKNFTFKCHR D +Y VN L FHPIH T ATAG DG
Sbjct: 197 SIEGRTSVEYINPSQEAQSKNFTFKCHRQIQKDYDIVYPVNDLKFHPIHQTLATAGGDGV 256
Query: 57 FNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95
FWD ++RL+ ++ I +FN DGS+ A + C
Sbjct: 257 VAFWDIQVRKRLRVLNPSKINISSISFNVDGSMLAIATC 295
>sp|Q9YGY3|BUB3_XENLA Mitotic checkpoint protein BUB3 OS=Xenopus laevis GN=bub3 PE=1 SV=1
Length = 330
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 1 VGSIEGRVGVHHLDDSQ--QSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSD 54
+ SIEGRV V +LD S Q K + FKCHR + +IY VN+++FH +H+TFAT GSD
Sbjct: 202 LSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKENNIEQIYPVNAVSFHNLHNTFATGGSD 261
Query: 55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYI 114
G N WD +K+RL R I F+ DGS A + Y + +H P A
Sbjct: 262 GFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGSTLAIAASYMYEMDDIDH-PEDA---- 316
Query: 115 YLHLPQETEVKGKPR 129
+++ Q T+ + KP+
Sbjct: 317 -IYIRQVTDAETKPK 330
>sp|Q9WVA3|BUB3_MOUSE Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2
Length = 326
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 VGSIEGRVGVHHLDDSQ--QSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSD 54
+ SIEGRV V +LD S Q K + FKCHR + +IY VN+++FH IH+TFAT GSD
Sbjct: 196 LSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSD 255
Query: 55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYI 114
G N WD +K+RL R I F+ DG+ A + Y + H P
Sbjct: 256 GFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEH-PEDG---- 310
Query: 115 YLHLPQETEVKGKPRA 130
+ + Q T+ + KP++
Sbjct: 311 -IFIRQVTDAETKPKS 325
>sp|Q1JQB2|BUB3_BOVIN Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1
Length = 326
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 VGSIEGRVGVHHLDDSQ--QSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSD 54
+ SIEGRV V +LD S Q K + FKCHR + +IY VN+++FH IH+TFAT GSD
Sbjct: 196 LSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSD 255
Query: 55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYI 114
G N WD +K+RL R I F+ DG+ A + Y + H P
Sbjct: 256 GFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEH-PEDG---- 310
Query: 115 YLHLPQETEVKGKPRA 130
+ + Q T+ + KP++
Sbjct: 311 -IFIRQVTDAETKPKS 325
>sp|Q5RB58|BUB3_PONAB Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1
Length = 328
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 VGSIEGRVGVHHLDDSQ--QSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSD 54
+ SIEGRV V +LD S Q K + FKCHR + +IY VN+++FH IH+TFAT GSD
Sbjct: 196 LSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSD 255
Query: 55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYI 114
G N WD +K+RL R I F+ DG+ A + Y + H P
Sbjct: 256 GFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEH-PEDG---- 310
Query: 115 YLHLPQETEVKGKPRA 130
+ + Q T+ + KP++
Sbjct: 311 -IFIRQVTDAETKPKS 325
>sp|O43684|BUB3_HUMAN Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1
Length = 328
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 VGSIEGRVGVHHLDDSQ--QSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSD 54
+ SIEGRV V +LD S Q K + FKCHR + +IY VN+++FH IH+TFAT GSD
Sbjct: 196 LSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSD 255
Query: 55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYI 114
G N WD +K+RL R I F+ DG+ A + Y + H P
Sbjct: 256 GFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEH-PEDG---- 310
Query: 115 YLHLPQETEVKGKPRA 130
+ + Q T+ + KP++
Sbjct: 311 -IFIRQVTDAETKPKS 325
>sp|Q54DM1|BUB3_DICDI Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum GN=bub3
PE=3 SV=1
Length = 331
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 1 VGSIEGRVGVHHLDDSQ--QSKNFTFKCHRDGSE----IYSVNSLNFHPIHHTFATAGSD 54
+ S+EGR+ + + D S QSK + FKCHR +Y VN + F+P + TFAT G D
Sbjct: 201 LASVEGRIAMEYFDPSPAVQSKKYAFKCHRLTESGVDVVYPVNCIAFNPHYGTFATGGCD 260
Query: 55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNP 107
FWD +++RL A+ I +FNTDG+I A + Y + +G ++H P
Sbjct: 261 KNVFFWDGANRKRLHALKTYPTSISSMSFNTDGNILAVASSYTFEEGEKDHPP 313
>sp|P26449|BUB3_YEAST Cell cycle arrest protein BUB3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUB3 PE=1 SV=1
Length = 341
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 3 SIEGRVGVHHLDDS----QQSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSD 54
SI+GRV V DD SK F F+CHR D + Y VNS+ F P H TAGSD
Sbjct: 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272
Query: 55 GAFNFWDKDSKQRLKAMSR----------CGQPIPC-----STFNTDGSI 89
G + W+ +++++K ++ C I C TF T+ +I
Sbjct: 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322
>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus
GN=KATNB1 PE=2 SV=2
Length = 657
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG 87
VN + FHP + A+ SD FWD + + + P+ C FN DG
Sbjct: 192 VNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDG 243
>sp|Q6FVD3|HIR1_CANGA Protein HIR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=HIR1 PE=3 SV=1
Length = 840
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 19/103 (18%)
Query: 22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW---------------DKDSKQ 66
F + H + S Y + +++ P AT G DG W D+D+ +
Sbjct: 6 FPWFSHHEESRDYEIYTVDVSPDGKRVATGGLDGKIRIWSVDALVSAAAGESGVDRDTHR 65
Query: 67 RLKAMSRCGQPIPCSTFNTDGSIFAYS----VCYDWSKGAENH 105
L +MSR + C F+ DG+ A + W+ ENH
Sbjct: 66 PLASMSRHTGSVTCVKFSPDGNYLASGSDDRILLIWAMDEENH 108
>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens
GN=KATNB1 PE=1 SV=1
Length = 655
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95
VN + FHP + A+ SD FWD + Q + + P+ FN DG YS C
Sbjct: 192 VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCL-YSGC 250
Query: 96 YD 97
D
Sbjct: 251 QD 252
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91
++ SL+FHP A+ D WD K + Q + C F+ DG A
Sbjct: 107 NICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLA 163
>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus
GN=Katnb1 PE=1 SV=1
Length = 658
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95
VN + FHP + A+ SD FWD + Q + + P+ FN DG YS C
Sbjct: 192 VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCL-YSGC 250
Query: 96 YD 97
D
Sbjct: 251 QD 252
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91
++ SL+FHP A+ D WD K + Q + C F+ DG A
Sbjct: 107 NICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLA 163
>sp|Q229Z6|POC1_TETTS POC1 centriolar protein homolog OS=Tetrahymena thermophila (strain
SB210) GN=TTHERM_01308010 PE=3 SV=1
Length = 634
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA---- 91
VNS++ HP + A+AGSD WD +++ + + I FN G FA
Sbjct: 275 VNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGS 334
Query: 92 YSVCYDW 98
++C W
Sbjct: 335 QNLCMVW 341
>sp|A0CH87|LIS12_PARTE Lissencephaly-1 homolog 2 OS=Paramecium tetraurelia
GN=GSPATT00007594001 PE=3 SV=1
Length = 403
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 6 GRVGVHHLDDSQQS---KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK 62
G++ + DD Q+ + F + HR G VN + FHP + +A DG+ WD
Sbjct: 80 GKIQFNKSDDEQRLTPFEKFKLEGHRAG-----VNCVAFHPQYQILGSASDDGSIKLWDY 134
Query: 63 DSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS-KGAENHNPATAKTYI 114
+S K + + C F+ G + S D S K E N KT I
Sbjct: 135 ESGHFEKTLKGHTSNVNCLAFDPTGK-YICSASSDLSIKLWELKNHTCVKTLI 186
>sp|A0DB19|LIS11_PARTE Lissencephaly-1 homolog 1 OS=Paramecium tetraurelia
GN=GSPATT00015130001 PE=3 SV=1
Length = 403
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 6 GRVGVHHLDDSQQS---KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK 62
G++ + DD Q+ + F + HR G VN + FHP + +A DG+ WD
Sbjct: 80 GKIQFNKSDDEQRLTPIEKFKLEGHRAG-----VNCVAFHPQYQILGSASDDGSIKLWDY 134
Query: 63 DSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS-KGAENHNPATAKTYI 114
+S K + + C F+ G + S D S K E N KT I
Sbjct: 135 ESGHFEKTLKGHTSNVNCLAFDPTGK-YICSASSDLSIKIWELKNHTCVKTLI 186
>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3
Length = 1120
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG--QPIPCSTFNTDGSIFAY 92
S+ + F + + AG D + FWD D+ Q L A+ G Q P FN +GS+ A
Sbjct: 599 SLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLAV 658
Query: 93 S 93
S
Sbjct: 659 S 659
>sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1
Length = 351
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 39 LNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91
+ F P+ FAT +D + WD D ++ SR P+ +F+ DG + A
Sbjct: 230 IKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLA 282
>sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1
Length = 351
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 39 LNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91
+ F P+ FAT +D + WD D ++ SR P+ +F+ DG + A
Sbjct: 230 IKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLA 282
>sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1
Length = 351
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 39 LNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91
+ F P+ FAT +D + WD D ++ SR P+ +F+ DG + A
Sbjct: 230 IKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLA 282
>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1
Length = 1131
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG--QPIPCSTFNTDGSIFAY 92
S+ + F + + AG D + FWD D+ Q L A+ G Q P FN +GS+ A
Sbjct: 599 SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLAV 658
Query: 93 S 93
S
Sbjct: 659 S 659
>sp|Q8SRB0|GBLP_ENCCU Guanine nucleotide-binding protein subunit beta-like protein
OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU08_1110
PE=1 SV=1
Length = 334
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 21 NFTFKCHRDGSEIYS--VNSLNFHPIHHTFATAGS-DGAFNFWDKDSKQRL--------- 68
+ K RD ++ +N + FHP + +GS DG WD D+++ L
Sbjct: 140 DLVLKMGRDMEMMHRGWINCVTFHPTEESILASGSADGTVKIWDLDTQEHLQTYLGGAYV 199
Query: 69 ---KAMSRCGQP--------IPCSTFNTDGSIFAY 92
KA + P + F+ DGSI Y
Sbjct: 200 DYEKAKEKKTSPVDYDESKSVTAMAFSKDGSILTY 234
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 29 DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD 86
DG +N L+ + T GSDG WD +SK+ + + G+ + C + N++
Sbjct: 63 DGGHSKRINGLDVSKDGNMMVTVGSDGIGRIWDTESKKSI-LLEGHGRDVLCVSINSN 119
>sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1
SV=1
Length = 476
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95
VN L+FHP+ ++ TA SDG D + + + P+ +F+ DG +
Sbjct: 231 VNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLT---- 286
Query: 96 YDWSKGAENHNPATAKTYIYLH 117
S GA+ +I+LH
Sbjct: 287 ---SGGADAQVLIWRTNFIHLH 305
>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog
OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3
Length = 837
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG 87
+ SL+FHP AT +D FWD ++ + + + + C +FN DG
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDG 239
>sp|Q8N9V3|WSDU1_HUMAN WD repeat, SAM and U-box domain-containing protein 1 OS=Homo
sapiens GN=WDSUB1 PE=1 SV=3
Length = 476
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK 62
S++ + ++ L D + + K H Y+V+ F P H A+ +DG W+
Sbjct: 29 SLDKTIRLYSLRDFTELPHSPLKFHT-----YAVHCCCFSPSGHILASCSTDGTTVLWNT 83
Query: 63 DSKQRLKAMSR-CGQPIPCSTFNTDGSIFA 91
++ Q L M + G P+ F+ D + A
Sbjct: 84 ENGQMLAVMEQPSGSPVRVCQFSPDSTCLA 113
>sp|Q6CG48|LIS1_YARLI Nuclear distribution protein PAC1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=PAC1 PE=3 SV=1
Length = 437
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWD 61
VN+++FHP H T A+A DG WD
Sbjct: 119 VNAVSFHPFHSTLASACEDGNIRIWD 144
>sp|Q6ZMW3|EMAL6_HUMAN Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens
GN=EML6 PE=2 SV=2
Length = 1958
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
VG+ +G + + + + N H +G EI+ + + HP F +A +DG W
Sbjct: 1661 VGTKDGEI--IEVGEKNAASNILIDGHMEG-EIWGLAT---HPSKDLFISASNDGTARIW 1714
Query: 61 DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94
D K+ L +S G C+ ++ DG + A +
Sbjct: 1715 DLADKKLLNKVS-LGHAARCAAYSPDGEMVAIGM 1747
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94
V L HP+ AT D W+ ++ R+ A+ + + C F+ DG A +
Sbjct: 1001 VWGLAAHPLLPICATVSDDKTLRIWELSAQHRMLAVRKLKKGGRCCAFSPDGKALAVGL 1059
>sp|Q8BHB4|WDR3_MOUSE WD repeat-containing protein 3 OS=Mus musculus GN=Wdr3 PE=2 SV=1
Length = 942
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 26 CHR-----DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80
CHR D S +Y L F P H F TAG D WD D + ++ + Q I C
Sbjct: 624 CHRSLFAHDDSVMY----LRFVPKSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWC 679
Query: 81 STFNTDGSIFAYSVCYDWS 99
+ G + S +D S
Sbjct: 680 LAVSPSGD-YVVSASHDKS 697
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 20 KNFTFKCHRDGSEI-------YSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS 72
+N RDG I + V S+ FHP T A+A D WD L+ ++
Sbjct: 706 ENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLT 765
Query: 73 RCGQPIPCSTFNTDGSIFAYS 93
+ C F+ DG+ A S
Sbjct: 766 GHTDWVRCVAFSPDGNTLASS 786
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91
V ++ FHP AT +D W+ + Q LK +S I ++ DG + A
Sbjct: 1023 VYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLA 1078
>sp|P73594|Y1409_SYNY3 Uncharacterized WD repeat-containing protein slr1409
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr1409 PE=4 SV=1
Length = 326
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91
VNS F+P ATA DG FW KD Q + + + +F+ DG A
Sbjct: 257 VNSAQFYPKGEWLATASDDGTIRFWQKDG-QLIYELPLVNARLTSLSFSPDGKQLA 311
>sp|Q5ZMC3|WSDU1_CHICK WD repeat, SAM and U-box domain-containing protein 1 OS=Gallus
gallus GN=WDSUB1 PE=2 SV=2
Length = 476
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK 62
S++ + ++ L+D + K H Y+V+ F P HT A+ +DGA WD
Sbjct: 29 SLDKTIRIYSLNDFTELPYSPLKGHT-----YAVHCCCFSPSGHTLASCSTDGATIIWDT 83
Query: 63 DSKQRLKAMSR-CGQPI------PCSTF----NTDGSIFAYSV 94
+ L + + G P+ P ST+ DGS+ ++V
Sbjct: 84 SDGRMLAVLEQPTGSPVRVCRFSPESTYLVSGAADGSVVLWNV 126
>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2
Length = 1135
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQP-IPCSTFNTDGSIFAY 92
SV + F + + F AG + FWD DS L + + G P PC N +G++ A
Sbjct: 601 SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGTLLAV 660
Query: 93 S 93
S
Sbjct: 661 S 661
>sp|Q7T0P4|POC1A_XENLA POC1 centriolar protein homolog A OS=Xenopus laevis GN=poc1a PE=1
SV=2
Length = 441
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91
VNSL+FHP + TA +D D + L + P+ C F+ +G FA
Sbjct: 231 VNSLSFHPSGNYLITASNDSTLKVLDLLEGRLLYTLHGHQGPVTCVKFSREGDFFA 286
>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus
purpuratus GN=KATNB1 PE=1 SV=1
Length = 690
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 24 FKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF 83
FK H G V + FHP A+ SD FWD ++ Q + + S + +F
Sbjct: 181 FKNHTGG-----VTGIEFHPNEFLLASGSSDRTVQFWDLETFQLVSSTSPGASAVRSISF 235
Query: 84 NTDGS 88
+ DGS
Sbjct: 236 HPDGS 240
>sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b
PE=2 SV=1
Length = 477
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIF 90
VN L+FHP ++ TA SDG D + + + P+ +F+ DG +F
Sbjct: 231 VNCLSFHPSGNSLVTASSDGTVKILDLVEGRLIYTLQGHTGPVFTVSFSKDGELF 285
>sp|Q5SQM0|EMAL6_MOUSE Echinoderm microtubule-associated protein-like 6 OS=Mus musculus
GN=Eml6 PE=2 SV=1
Length = 1958
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
VG+ +G + + + + N H +G EI+ + + HP F +A +DG W
Sbjct: 1661 VGTKDGEI--IEVGEKSAASNILIDGHMEG-EIWGLAT---HPSKDMFISASNDGTARIW 1714
Query: 61 DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94
D K+ L ++ G C+ ++ DG + A +
Sbjct: 1715 DLADKKLLNKVN-LGHAARCAAYSPDGEMVAIGM 1747
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94
V L HP+ AT D W+ S+ R+ A+ + + C F+ DG A +
Sbjct: 1001 VWGLAAHPLLPICATVSDDKTLRIWELSSQHRMLAVRKLKKGGRCCAFSPDGKALAVGL 1059
>sp|Q0D0X6|LIS1_ASPTN Nuclear distribution protein nudF OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=nudF PE=3 SV=1
Length = 446
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 18 QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWD 61
QS TF+ HRD ++ S+ FHP+ + A+ D WD
Sbjct: 105 QSSAHTFESHRD-----AITSIAFHPVFTSLASGSEDCTIKIWD 143
>sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2
SV=1
Length = 313
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94
V +L+ P+ TF +A D WD S M G+P+ CS F+ +G IFA V
Sbjct: 110 VVALSMSPVDDTFISASLDKTIRLWDLRSPNCQGLMHLQGKPV-CS-FDPEGLIFAAGV 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,785,208
Number of Sequences: 539616
Number of extensions: 2206127
Number of successful extensions: 5887
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 5519
Number of HSP's gapped (non-prelim): 431
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)