Query 041215
Match_columns 136
No_of_seqs 106 out of 1906
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0647 mRNA export protein (c 99.9 1.5E-23 3.3E-28 154.7 12.0 129 1-130 215-347 (347)
2 KOG1036 Mitotic spindle checkp 99.7 6.2E-17 1.3E-21 119.9 9.8 124 1-127 194-323 (323)
3 KOG0263 Transcription initiati 99.6 2.2E-14 4.8E-19 116.3 9.2 92 1-99 552-643 (707)
4 KOG0263 Transcription initiati 99.6 1.1E-14 2.4E-19 118.0 7.5 91 2-99 511-601 (707)
5 KOG0266 WD40 repeat-containing 99.6 4.5E-14 9.8E-19 112.3 10.9 90 2-98 221-311 (456)
6 KOG0286 G-protein beta subunit 99.5 7E-14 1.5E-18 103.5 10.6 96 2-104 162-258 (343)
7 KOG0295 WD40 repeat-containing 99.5 1.1E-13 2.3E-18 104.8 9.7 90 1-97 309-398 (406)
8 KOG0272 U4/U6 small nuclear ri 99.5 2.2E-14 4.8E-19 110.1 5.7 92 2-100 279-370 (459)
9 KOG0272 U4/U6 small nuclear ri 99.5 4.8E-14 1E-18 108.2 7.4 90 2-98 321-411 (459)
10 PTZ00421 coronin; Provisional 99.5 4.6E-13 1E-17 107.4 11.5 99 1-104 93-197 (493)
11 KOG0284 Polyadenylation factor 99.5 1.3E-13 2.8E-18 105.6 7.3 116 2-124 198-322 (464)
12 KOG0271 Notchless-like WD40 re 99.4 4.3E-13 9.3E-18 102.4 7.3 97 2-105 342-439 (480)
13 KOG0271 Notchless-like WD40 re 99.4 4.4E-13 9.5E-18 102.3 6.6 89 2-97 385-473 (480)
14 KOG0266 WD40 repeat-containing 99.4 3E-12 6.5E-17 101.9 11.5 97 1-104 263-363 (456)
15 KOG0279 G protein beta subunit 99.4 4.5E-12 9.8E-17 93.4 10.2 91 1-99 80-174 (315)
16 KOG0279 G protein beta subunit 99.4 4.5E-12 9.8E-17 93.4 9.2 94 2-100 34-130 (315)
17 KOG0302 Ribosome Assembly prot 99.4 4.4E-12 9.6E-17 96.6 9.5 91 1-98 275-371 (440)
18 KOG1407 WD40 repeat protein [F 99.4 2.8E-12 6E-17 93.9 7.8 87 6-99 169-255 (313)
19 KOG0296 Angio-associated migra 99.4 4.3E-12 9.3E-17 96.2 8.6 94 1-103 303-396 (399)
20 KOG0273 Beta-transducin family 99.3 9.8E-12 2.1E-16 96.8 10.2 89 2-97 335-474 (524)
21 KOG1445 Tumor-specific antigen 99.3 1.9E-12 4.2E-17 104.2 6.4 103 1-108 645-753 (1012)
22 KOG0285 Pleiotropic regulator 99.3 3.7E-12 8.1E-17 96.7 7.5 98 1-105 168-265 (460)
23 KOG0278 Serine/threonine kinas 99.3 9.6E-12 2.1E-16 90.8 9.1 76 30-105 221-297 (334)
24 PTZ00420 coronin; Provisional 99.3 2.1E-11 4.7E-16 99.1 11.9 97 1-103 92-195 (568)
25 KOG0286 G-protein beta subunit 99.3 1.9E-11 4E-16 90.7 9.3 91 2-100 205-297 (343)
26 KOG0643 Translation initiation 99.3 2E-11 4.3E-16 89.8 9.3 105 17-126 136-241 (327)
27 KOG0269 WD40 repeat-containing 99.3 8.2E-12 1.8E-16 101.9 7.9 101 1-108 151-253 (839)
28 KOG0276 Vesicle coat complex C 99.3 7.1E-12 1.5E-16 100.6 7.4 92 1-99 158-251 (794)
29 KOG0283 WD40 repeat-containing 99.3 1.9E-11 4.1E-16 100.0 10.0 116 2-135 386-502 (712)
30 KOG0319 WD40-repeat-containing 99.3 1.8E-11 3.9E-16 99.4 9.1 93 1-100 480-572 (775)
31 KOG0285 Pleiotropic regulator 99.3 1.3E-11 2.7E-16 93.9 7.5 91 2-99 253-343 (460)
32 KOG0318 WD40 repeat stress pro 99.3 3.6E-11 7.8E-16 94.8 10.1 92 2-100 166-260 (603)
33 KOG0295 WD40 repeat-containing 99.2 6.2E-11 1.3E-15 90.0 8.9 89 2-97 253-356 (406)
34 KOG0289 mRNA splicing factor [ 99.2 9.3E-11 2E-15 90.8 9.9 91 2-97 321-411 (506)
35 KOG0291 WD40-repeat-containing 99.2 8.5E-11 1.8E-15 96.0 10.1 92 3-101 327-418 (893)
36 KOG0277 Peroxisomal targeting 99.2 3.8E-11 8.2E-16 87.8 7.1 100 2-108 79-181 (311)
37 KOG0318 WD40 repeat stress pro 99.2 1.1E-10 2.4E-15 92.2 9.9 103 1-108 460-563 (603)
38 KOG0647 mRNA export protein (c 99.2 1.3E-10 2.8E-15 86.6 9.5 90 1-97 45-136 (347)
39 KOG0264 Nucleosome remodeling 99.2 9.6E-11 2.1E-15 90.6 9.1 90 2-98 246-340 (422)
40 KOG0316 Conserved WD40 repeat- 99.2 6.8E-11 1.5E-15 85.8 7.7 94 2-102 35-128 (307)
41 PTZ00420 coronin; Provisional 99.2 2.8E-10 6.1E-15 92.6 11.8 92 2-100 50-151 (568)
42 PTZ00421 coronin; Provisional 99.2 2.4E-10 5.2E-15 91.8 10.9 86 2-94 144-230 (493)
43 KOG0294 WD40 repeat-containing 99.2 1.6E-10 3.4E-15 86.6 9.0 91 1-98 58-150 (362)
44 KOG0273 Beta-transducin family 99.2 2.2E-10 4.8E-15 89.4 9.9 88 2-97 428-515 (524)
45 PLN00181 protein SPA1-RELATED; 99.2 4E-10 8.6E-15 95.0 12.0 94 2-103 551-646 (793)
46 KOG0264 Nucleosome remodeling 99.2 1.4E-10 3E-15 89.7 8.4 102 2-108 196-306 (422)
47 KOG0291 WD40-repeat-containing 99.2 2.9E-10 6.2E-15 93.0 10.6 89 1-97 367-499 (893)
48 cd00200 WD40 WD40 domain, foun 99.2 3.3E-10 7.2E-15 81.0 9.9 90 2-98 195-284 (289)
49 KOG0645 WD40 repeat protein [G 99.2 3.3E-10 7.1E-15 83.4 9.8 90 2-96 33-126 (312)
50 KOG0645 WD40 repeat protein [G 99.2 3.9E-10 8.5E-15 83.0 9.9 95 1-100 78-175 (312)
51 KOG0284 Polyadenylation factor 99.2 3.1E-11 6.7E-16 92.8 4.2 91 1-98 239-329 (464)
52 KOG0319 WD40-repeat-containing 99.2 1.4E-10 3E-15 94.3 8.0 89 2-97 523-611 (775)
53 KOG1273 WD40 repeat protein [G 99.1 1.4E-10 3E-15 87.1 7.4 87 1-95 40-126 (405)
54 KOG0277 Peroxisomal targeting 99.1 2.6E-10 5.6E-15 83.4 8.6 97 1-105 122-221 (311)
55 KOG0292 Vesicle coat complex C 99.1 6.1E-11 1.3E-15 98.4 6.0 88 5-99 30-117 (1202)
56 KOG1332 Vesicle coat complex C 99.1 2.7E-10 5.9E-15 82.9 8.5 92 2-100 29-129 (299)
57 KOG2111 Uncharacterized conser 99.1 1.2E-09 2.7E-14 81.8 12.2 86 5-97 158-248 (346)
58 cd00200 WD40 WD40 domain, foun 99.1 1.5E-09 3.4E-14 77.5 12.0 91 2-99 69-159 (289)
59 KOG0276 Vesicle coat complex C 99.1 6.7E-10 1.4E-14 89.4 10.5 92 1-99 72-165 (794)
60 KOG0282 mRNA splicing factor [ 99.1 1.2E-10 2.6E-15 90.9 6.1 91 1-99 232-324 (503)
61 KOG2110 Uncharacterized conser 99.1 1.4E-09 3E-14 82.9 10.9 86 5-97 152-240 (391)
62 KOG0275 Conserved WD40 repeat- 99.1 4.8E-11 1E-15 90.0 3.1 95 1-102 230-333 (508)
63 KOG0275 Conserved WD40 repeat- 99.1 8.5E-11 1.8E-15 88.7 4.0 93 1-100 280-373 (508)
64 KOG0315 G-protein beta subunit 99.1 1.3E-09 2.8E-14 79.7 9.8 80 18-102 205-285 (311)
65 KOG1034 Transcriptional repres 99.1 4.6E-10 9.9E-15 84.6 7.4 89 2-97 111-203 (385)
66 KOG0282 mRNA splicing factor [ 99.1 3.7E-10 8E-15 88.3 7.0 89 2-98 276-365 (503)
67 KOG1539 WD repeat protein [Gen 99.1 5.6E-10 1.2E-14 92.0 8.2 83 8-96 556-638 (910)
68 KOG0289 mRNA splicing factor [ 99.1 7.1E-10 1.5E-14 86.0 8.1 90 1-97 364-454 (506)
69 KOG2394 WD40 protein DMR-N9 [G 99.1 5.3E-10 1.1E-14 88.6 7.5 65 35-99 292-356 (636)
70 KOG0772 Uncharacterized conser 99.1 5.1E-10 1.1E-14 88.4 7.2 103 2-105 287-394 (641)
71 KOG0292 Vesicle coat complex C 99.1 7.4E-10 1.6E-14 92.1 8.2 90 2-98 69-158 (1202)
72 PLN00181 protein SPA1-RELATED; 99.0 2.3E-09 5E-14 90.4 11.2 95 1-103 635-736 (793)
73 KOG0267 Microtubule severing p 99.0 1.8E-10 4E-15 93.7 4.3 90 1-97 87-176 (825)
74 KOG0293 WD40 repeat-containing 99.0 1.1E-09 2.4E-14 84.7 7.9 92 1-97 241-334 (519)
75 KOG0639 Transducin-like enhanc 99.0 4.7E-10 1E-14 88.6 5.5 98 2-108 527-664 (705)
76 KOG0308 Conserved WD40 repeat- 99.0 3.2E-09 6.9E-14 85.8 10.0 90 2-98 189-278 (735)
77 KOG0310 Conserved WD40 repeat- 99.0 3.1E-09 6.7E-14 83.2 9.1 88 2-97 129-218 (487)
78 KOG0305 Anaphase promoting com 99.0 7.5E-10 1.6E-14 88.0 5.5 88 1-95 275-364 (484)
79 KOG0296 Angio-associated migra 99.0 2.4E-09 5.1E-14 81.5 7.7 75 19-98 55-129 (399)
80 PF08662 eIF2A: Eukaryotic tra 99.0 8.8E-09 1.9E-13 73.5 10.3 80 4-95 81-163 (194)
81 KOG0643 Translation initiation 99.0 1.1E-08 2.4E-13 75.4 11.0 88 2-97 28-115 (327)
82 KOG0315 G-protein beta subunit 99.0 2.7E-09 5.8E-14 78.0 7.6 110 2-120 16-136 (311)
83 KOG1446 Histone H3 (Lys4) meth 99.0 3.9E-09 8.4E-14 78.8 8.4 83 11-95 212-295 (311)
84 KOG0281 Beta-TrCP (transducin 99.0 1.4E-09 3.1E-14 82.8 6.2 88 1-99 212-299 (499)
85 KOG0265 U5 snRNP-specific prot 99.0 8.5E-09 1.8E-13 76.9 10.1 98 2-105 65-163 (338)
86 KOG0288 WD40 repeat protein Ti 99.0 3.6E-09 7.7E-14 81.7 8.3 93 2-97 359-453 (459)
87 KOG0316 Conserved WD40 repeat- 99.0 7.2E-09 1.6E-13 75.4 9.2 95 3-102 76-210 (307)
88 KOG0640 mRNA cleavage stimulat 99.0 2.4E-09 5.1E-14 80.5 6.9 97 1-102 189-288 (430)
89 KOG0303 Actin-binding protein 98.9 4.9E-09 1.1E-13 80.7 8.5 91 1-97 99-195 (472)
90 KOG0313 Microtubule binding pr 98.9 4.4E-09 9.5E-14 80.5 7.8 95 1-103 317-416 (423)
91 KOG0267 Microtubule severing p 98.9 8.1E-10 1.7E-14 90.0 4.1 91 2-99 130-220 (825)
92 KOG0641 WD40 repeat protein [G 98.9 1.3E-08 2.9E-13 73.8 9.5 95 1-97 199-295 (350)
93 KOG0294 WD40 repeat-containing 98.9 8.1E-09 1.7E-13 77.5 8.7 87 1-95 102-188 (362)
94 KOG0973 Histone transcription 98.9 5.2E-09 1.1E-13 88.0 8.4 92 1-97 86-193 (942)
95 KOG0269 WD40 repeat-containing 98.9 1.6E-09 3.4E-14 88.8 5.2 101 1-108 105-210 (839)
96 KOG0310 Conserved WD40 repeat- 98.9 4.2E-09 9.2E-14 82.4 7.3 98 1-105 85-184 (487)
97 KOG1007 WD repeat protein TSSC 98.9 3.6E-09 7.7E-14 78.8 6.6 87 4-97 191-280 (370)
98 KOG2394 WD40 protein DMR-N9 [G 98.9 1.5E-09 3.2E-14 86.2 4.7 77 2-85 308-384 (636)
99 KOG0274 Cdc4 and related F-box 98.9 1.2E-08 2.5E-13 82.9 9.9 85 2-97 267-351 (537)
100 KOG0265 U5 snRNP-specific prot 98.9 1E-08 2.2E-13 76.5 8.6 89 2-97 192-330 (338)
101 KOG0306 WD40-repeat-containing 98.9 4.3E-09 9.3E-14 86.2 6.7 93 1-100 82-174 (888)
102 KOG0274 Cdc4 and related F-box 98.9 1.8E-08 3.9E-13 81.8 10.0 88 2-99 307-394 (537)
103 KOG0281 Beta-TrCP (transducin 98.9 2.7E-09 5.8E-14 81.3 4.9 67 32-102 319-385 (499)
104 KOG1407 WD40 repeat protein [F 98.9 1.2E-08 2.6E-13 75.1 8.0 91 1-99 206-296 (313)
105 KOG0313 Microtubule binding pr 98.9 1.5E-08 3.2E-13 77.6 8.7 95 1-104 120-221 (423)
106 KOG1273 WD40 repeat protein [G 98.9 8E-09 1.7E-13 77.8 7.1 62 36-97 26-87 (405)
107 KOG4283 Transcription-coupled 98.9 8.2E-09 1.8E-13 77.2 6.9 89 2-97 164-268 (397)
108 PF00400 WD40: WD domain, G-be 98.8 1.1E-08 2.4E-13 53.9 5.3 38 19-61 2-39 (39)
109 KOG0305 Anaphase promoting com 98.8 5.2E-08 1.1E-12 77.7 10.8 100 1-108 318-420 (484)
110 KOG1188 WD40 repeat protein [G 98.8 1.2E-08 2.6E-13 77.2 6.7 100 2-108 46-199 (376)
111 KOG0973 Histone transcription 98.8 1.2E-08 2.6E-13 85.8 7.2 85 2-93 147-237 (942)
112 KOG0270 WD40 repeat-containing 98.8 7.7E-09 1.7E-13 80.3 5.6 95 1-100 197-312 (463)
113 KOG1332 Vesicle coat complex C 98.8 5.7E-09 1.2E-13 76.1 4.5 93 1-98 121-234 (299)
114 KOG0306 WD40-repeat-containing 98.8 1.2E-08 2.5E-13 83.8 6.6 91 1-98 567-657 (888)
115 KOG0293 WD40 repeat-containing 98.8 7E-09 1.5E-13 80.3 4.6 86 11-99 420-507 (519)
116 KOG0300 WD40 repeat-containing 98.8 4.1E-08 8.8E-13 74.3 8.2 124 2-134 290-442 (481)
117 KOG0278 Serine/threonine kinas 98.8 2.5E-08 5.5E-13 73.2 6.9 99 2-108 118-225 (334)
118 KOG0299 U3 snoRNP-associated p 98.8 1.2E-07 2.6E-12 74.1 10.7 105 1-108 343-458 (479)
119 KOG0302 Ribosome Assembly prot 98.8 2.1E-08 4.7E-13 76.8 6.4 72 23-100 252-327 (440)
120 KOG0322 G-protein beta subunit 98.8 2.7E-08 5.9E-13 73.3 6.7 91 2-97 223-315 (323)
121 KOG0283 WD40 repeat-containing 98.8 9.6E-09 2.1E-13 84.4 4.8 71 20-97 361-432 (712)
122 KOG0640 mRNA cleavage stimulat 98.7 1.3E-08 2.8E-13 76.6 4.9 82 22-108 106-205 (430)
123 KOG1408 WD40 repeat protein [F 98.7 3E-08 6.6E-13 81.3 7.4 90 2-98 614-706 (1080)
124 KOG1274 WD40 repeat protein [G 98.7 6.3E-08 1.4E-12 80.7 9.3 89 2-97 114-210 (933)
125 KOG0301 Phospholipase A2-activ 98.7 5.2E-08 1.1E-12 79.3 8.0 88 1-99 156-243 (745)
126 KOG1539 WD repeat protein [Gen 98.7 9.7E-08 2.1E-12 79.1 9.2 92 1-99 465-600 (910)
127 KOG0772 Uncharacterized conser 98.7 5.2E-08 1.1E-12 77.3 6.3 91 2-95 335-429 (641)
128 KOG1009 Chromatin assembly com 98.7 1.2E-07 2.5E-12 73.3 7.9 93 2-99 32-147 (434)
129 KOG1272 WD40-repeat-containing 98.7 3.3E-08 7E-13 77.5 4.8 85 2-95 269-353 (545)
130 KOG4378 Nuclear protein COP1 [ 98.7 1.3E-07 2.8E-12 75.0 8.1 100 1-108 182-283 (673)
131 KOG1538 Uncharacterized conser 98.7 4E-08 8.7E-13 80.2 5.3 82 10-98 35-116 (1081)
132 KOG1408 WD40 repeat protein [F 98.6 2.2E-07 4.8E-12 76.4 9.2 83 6-94 57-141 (1080)
133 KOG0639 Transducin-like enhanc 98.6 4.6E-08 1E-12 77.5 4.7 93 1-98 482-574 (705)
134 KOG0650 WD40 repeat nucleolar 98.6 2.7E-07 5.8E-12 74.4 8.7 73 19-97 391-465 (733)
135 KOG0642 Cell-cycle nuclear pro 98.6 1.7E-07 3.8E-12 74.7 7.5 97 2-103 312-424 (577)
136 KOG0270 WD40 repeat-containing 98.6 6.2E-07 1.3E-11 69.9 10.2 101 1-108 261-363 (463)
137 PF08662 eIF2A: Eukaryotic tra 98.6 1.3E-06 2.7E-11 62.4 10.6 61 35-98 61-123 (194)
138 KOG0268 Sof1-like rRNA process 98.5 8.8E-08 1.9E-12 73.2 4.4 91 2-100 206-297 (433)
139 KOG1446 Histone H3 (Lys4) meth 98.5 1.7E-06 3.6E-11 64.9 11.0 100 2-108 32-133 (311)
140 KOG0290 Conserved WD40 repeat- 98.5 1.1E-06 2.4E-11 65.8 9.9 90 1-97 168-310 (364)
141 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 1.6E-06 3.5E-11 63.7 10.6 86 2-96 7-93 (300)
142 KOG2445 Nuclear pore complex c 98.5 1.7E-06 3.6E-11 65.1 10.5 99 1-104 30-143 (361)
143 KOG0646 WD40 repeat protein [G 98.5 1.8E-06 4E-11 67.6 11.0 91 1-97 140-239 (476)
144 KOG0301 Phospholipase A2-activ 98.5 2.7E-07 5.9E-12 75.2 5.8 87 1-98 76-162 (745)
145 KOG2110 Uncharacterized conser 98.5 1.9E-06 4.1E-11 66.0 9.8 87 10-98 108-196 (391)
146 KOG1009 Chromatin assembly com 98.5 2.5E-07 5.5E-12 71.4 5.1 91 2-97 83-187 (434)
147 KOG4283 Transcription-coupled 98.5 1.2E-06 2.6E-11 65.8 8.5 91 2-100 120-214 (397)
148 KOG0646 WD40 repeat protein [G 98.5 2.7E-07 5.9E-12 72.2 5.1 63 35-97 83-145 (476)
149 KOG1036 Mitotic spindle checkp 98.5 9E-07 2E-11 66.3 7.6 84 1-94 30-113 (323)
150 KOG0308 Conserved WD40 repeat- 98.5 1.1E-06 2.4E-11 71.4 8.6 95 2-98 136-236 (735)
151 KOG2055 WD40 repeat protein [G 98.4 1.6E-06 3.5E-11 68.0 9.1 82 11-98 328-410 (514)
152 KOG0268 Sof1-like rRNA process 98.4 2.5E-07 5.3E-12 70.8 4.2 90 2-99 247-338 (433)
153 KOG0299 U3 snoRNP-associated p 98.4 1.2E-06 2.6E-11 68.6 8.0 66 32-97 201-266 (479)
154 KOG2096 WD40 repeat protein [G 98.4 4.9E-07 1.1E-11 68.4 5.4 40 19-63 269-308 (420)
155 KOG1274 WD40 repeat protein [G 98.4 2.7E-06 5.9E-11 71.3 9.8 91 1-98 71-161 (933)
156 KOG1063 RNA polymerase II elon 98.4 9.8E-07 2.1E-11 72.1 6.9 84 10-98 554-641 (764)
157 KOG4547 WD40 repeat-containing 98.4 2.5E-06 5.4E-11 68.4 9.0 81 6-93 122-207 (541)
158 COG2319 FOG: WD40 repeat [Gene 98.4 7.6E-06 1.6E-10 60.8 11.2 87 4-97 132-221 (466)
159 TIGR03866 PQQ_ABC_repeats PQQ- 98.4 6.4E-06 1.4E-10 60.5 10.4 85 3-96 50-135 (300)
160 KOG2106 Uncharacterized conser 98.4 5E-06 1.1E-10 66.2 10.1 93 2-103 424-518 (626)
161 KOG2106 Uncharacterized conser 98.4 4.7E-06 1E-10 66.3 9.9 87 2-100 386-472 (626)
162 KOG2096 WD40 repeat protein [G 98.4 1.9E-06 4E-11 65.3 7.3 88 2-97 205-300 (420)
163 KOG1524 WD40 repeat-containing 98.4 6.3E-07 1.4E-11 71.7 4.9 84 1-93 80-163 (737)
164 KOG2048 WD40 repeat protein [G 98.3 3.5E-06 7.7E-11 68.6 9.1 94 1-97 171-267 (691)
165 KOG0300 WD40 repeat-containing 98.3 9E-07 2E-11 67.1 5.3 74 20-98 264-337 (481)
166 KOG2919 Guanine nucleotide-bin 98.3 2.4E-06 5.3E-11 64.8 7.5 54 42-95 306-360 (406)
167 KOG0771 Prolactin regulatory e 98.3 1.8E-06 4E-11 66.7 6.8 56 2-65 162-217 (398)
168 KOG1445 Tumor-specific antigen 98.3 2.6E-06 5.6E-11 69.6 7.8 98 1-103 97-198 (1012)
169 KOG0288 WD40 repeat protein Ti 98.3 2.9E-07 6.2E-12 71.3 2.2 95 2-101 193-287 (459)
170 KOG1310 WD40 repeat protein [G 98.3 1.4E-06 3.1E-11 69.9 6.0 80 21-105 43-125 (758)
171 KOG0771 Prolactin regulatory e 98.3 1.3E-06 2.8E-11 67.5 5.3 61 37-97 148-208 (398)
172 KOG4328 WD40 protein [Function 98.3 2.4E-06 5.2E-11 67.0 6.6 87 13-104 306-398 (498)
173 KOG1524 WD40 repeat-containing 98.3 4.3E-06 9.2E-11 67.1 7.6 61 20-86 178-238 (737)
174 KOG1188 WD40 repeat protein [G 98.3 4.6E-06 1E-10 63.4 7.5 58 30-87 162-223 (376)
175 KOG1523 Actin-related protein 98.2 3.1E-06 6.8E-11 63.9 6.3 102 1-107 117-238 (361)
176 KOG3881 Uncharacterized conser 98.2 8.6E-06 1.9E-10 62.8 8.5 95 5-106 225-321 (412)
177 KOG0303 Actin-binding protein 98.2 1.1E-05 2.4E-10 62.6 9.0 83 2-92 150-233 (472)
178 KOG1963 WD40 repeat protein [G 98.2 1.1E-05 2.4E-10 67.2 9.7 91 2-98 223-315 (792)
179 KOG1007 WD repeat protein TSSC 98.2 8.2E-06 1.8E-10 61.2 8.1 94 2-102 233-357 (370)
180 PF02239 Cytochrom_D1: Cytochr 98.2 2.4E-05 5.2E-10 61.1 11.0 84 4-95 14-97 (369)
181 KOG2048 WD40 repeat protein [G 98.2 2E-05 4.3E-10 64.4 9.7 91 5-100 87-179 (691)
182 KOG0649 WD40 repeat protein [G 98.2 1.2E-05 2.7E-10 59.0 7.8 85 6-97 134-228 (325)
183 KOG2055 WD40 repeat protein [G 98.2 1.2E-05 2.6E-10 63.3 8.1 100 1-105 230-333 (514)
184 KOG2445 Nuclear pore complex c 98.2 1.6E-05 3.4E-10 60.0 8.4 88 6-99 199-312 (361)
185 KOG1063 RNA polymerase II elon 98.1 6.9E-06 1.5E-10 67.3 6.9 75 30-104 522-601 (764)
186 KOG0321 WD40 repeat-containing 98.1 3.2E-06 7E-11 68.6 5.0 91 2-99 70-169 (720)
187 KOG0974 WD-repeat protein WDR6 98.1 1.7E-05 3.7E-10 67.2 9.1 87 2-97 151-238 (967)
188 KOG1523 Actin-related protein 98.1 1.2E-05 2.7E-10 60.8 7.4 86 5-95 31-120 (361)
189 KOG0307 Vesicle coat complex C 98.1 4.2E-06 9.1E-11 71.4 5.4 91 2-97 180-276 (1049)
190 KOG1538 Uncharacterized conser 98.1 5.3E-06 1.2E-10 68.2 5.7 62 35-97 14-75 (1081)
191 KOG0322 G-protein beta subunit 98.1 2.6E-06 5.7E-11 63.0 3.6 54 2-62 269-322 (323)
192 COG2319 FOG: WD40 repeat [Gene 98.1 6.9E-05 1.5E-09 55.6 11.0 90 5-102 177-268 (466)
193 KOG1272 WD40-repeat-containing 98.1 4.2E-06 9.1E-11 65.9 4.4 120 2-128 227-346 (545)
194 KOG4378 Nuclear protein COP1 [ 98.1 1.7E-05 3.6E-10 63.3 7.5 90 2-97 139-230 (673)
195 KOG0641 WD40 repeat protein [G 98.1 3.9E-05 8.4E-10 56.0 8.8 82 11-97 256-341 (350)
196 KOG0307 Vesicle coat complex C 98.0 7.2E-06 1.6E-10 70.0 5.2 90 8-102 232-324 (1049)
197 KOG0644 Uncharacterized conser 98.0 2.4E-06 5.3E-11 71.3 2.2 79 2-87 208-286 (1113)
198 KOG0650 WD40 repeat nucleolar 98.0 6.8E-06 1.5E-10 66.5 4.3 95 1-102 624-732 (733)
199 KOG1310 WD40 repeat protein [G 98.0 2.4E-05 5.2E-10 63.1 7.2 101 1-108 67-181 (758)
200 KOG0642 Cell-cycle nuclear pro 98.0 1.1E-05 2.3E-10 64.8 4.8 73 20-97 286-366 (577)
201 smart00320 WD40 WD40 repeats. 98.0 3.5E-05 7.6E-10 38.1 5.3 38 19-61 3-40 (40)
202 KOG1034 Transcriptional repres 98.0 1.5E-05 3.3E-10 60.5 5.0 59 1-63 153-211 (385)
203 PF00400 WD40: WD domain, G-be 97.9 2.7E-05 5.9E-10 40.6 4.4 34 66-99 2-35 (39)
204 KOG2139 WD40 repeat protein [G 97.9 9.9E-05 2.1E-09 56.9 8.8 82 6-95 218-300 (445)
205 KOG0280 Uncharacterized conser 97.8 0.00012 2.6E-09 55.1 7.9 75 21-100 158-236 (339)
206 KOG0290 Conserved WD40 repeat- 97.8 0.00021 4.6E-09 53.8 8.9 107 2-108 117-230 (364)
207 KOG0649 WD40 repeat protein [G 97.8 0.00017 3.7E-09 53.2 8.1 97 4-100 79-181 (325)
208 PRK01742 tolB translocation pr 97.8 0.00025 5.3E-09 56.2 9.7 78 9-95 185-267 (429)
209 PRK05137 tolB translocation pr 97.7 0.00044 9.6E-09 54.8 10.4 81 7-94 181-264 (435)
210 KOG4328 WD40 protein [Function 97.7 0.0001 2.3E-09 58.0 6.2 92 1-97 205-301 (498)
211 KOG1409 Uncharacterized conser 97.7 0.00014 3E-09 55.8 6.7 92 1-97 170-262 (404)
212 KOG2139 WD40 repeat protein [G 97.7 0.00042 9.1E-09 53.6 8.9 63 35-97 197-260 (445)
213 PRK02889 tolB translocation pr 97.7 0.00046 1E-08 54.7 9.5 82 6-94 174-258 (427)
214 KOG4547 WD40 repeat-containing 97.6 0.00041 8.9E-09 56.0 8.8 82 9-95 81-164 (541)
215 KOG2919 Guanine nucleotide-bin 97.6 0.00022 4.7E-09 54.4 6.1 57 3-62 130-186 (406)
216 KOG1587 Cytoplasmic dynein int 97.6 0.00016 3.5E-09 59.1 5.8 87 5-97 419-508 (555)
217 KOG1963 WD40 repeat protein [G 97.6 0.00052 1.1E-08 57.6 8.6 66 32-97 204-273 (792)
218 PRK01742 tolB translocation pr 97.6 0.00036 7.7E-09 55.3 7.5 84 4-96 268-353 (429)
219 PF11768 DUF3312: Protein of u 97.5 0.0016 3.4E-08 52.9 10.2 68 35-104 261-328 (545)
220 KOG4714 Nucleoporin [Nuclear s 97.5 0.00011 2.4E-09 54.5 3.4 63 35-97 181-246 (319)
221 KOG1587 Cytoplasmic dynein int 97.5 0.00067 1.5E-08 55.6 8.2 90 1-95 365-461 (555)
222 KOG1517 Guanine nucleotide bin 97.5 0.00051 1.1E-08 59.3 7.5 87 2-95 1227-1324(1387)
223 KOG0321 WD40 repeat-containing 97.4 0.00026 5.7E-09 57.9 5.3 88 3-97 119-239 (720)
224 KOG2111 Uncharacterized conser 97.4 0.0028 6E-08 48.2 10.3 58 2-64 199-257 (346)
225 KOG4497 Uncharacterized conser 97.4 0.0021 4.5E-08 49.4 9.2 62 35-97 93-155 (447)
226 KOG1240 Protein kinase contain 97.4 0.00069 1.5E-08 59.1 7.4 77 18-99 1038-1122(1431)
227 PRK03629 tolB translocation pr 97.4 0.0021 4.6E-08 51.0 9.7 85 5-96 264-351 (429)
228 PRK05137 tolB translocation pr 97.4 0.002 4.3E-08 51.1 9.5 80 9-95 227-309 (435)
229 KOG0644 Uncharacterized conser 97.3 7.9E-05 1.7E-09 62.6 1.2 70 22-96 184-253 (1113)
230 COG4946 Uncharacterized protei 97.3 0.0032 7E-08 50.5 9.9 89 1-97 376-465 (668)
231 KOG2315 Predicted translation 97.3 0.0014 3E-08 52.9 7.9 59 35-95 313-374 (566)
232 PRK04922 tolB translocation pr 97.3 0.0022 4.7E-08 50.9 9.1 78 9-93 185-265 (433)
233 KOG2321 WD40 repeat protein [G 97.3 0.0013 2.8E-08 53.6 7.6 88 13-105 160-258 (703)
234 KOG3881 Uncharacterized conser 97.3 0.00044 9.5E-09 53.7 4.7 73 6-86 269-342 (412)
235 PRK02889 tolB translocation pr 97.3 0.0031 6.6E-08 50.0 9.6 80 9-95 221-303 (427)
236 PRK03629 tolB translocation pr 97.2 0.0048 1E-07 49.0 9.9 61 35-96 244-307 (429)
237 PRK11028 6-phosphogluconolacto 97.1 0.0091 2E-07 45.3 10.7 85 3-95 9-99 (330)
238 PRK04922 tolB translocation pr 97.1 0.0048 1E-07 49.0 9.5 85 4-95 268-355 (433)
239 TIGR02800 propeller_TolB tol-p 97.1 0.006 1.3E-07 47.6 9.9 80 7-93 169-251 (417)
240 KOG3914 WD repeat protein WDR4 97.1 0.0015 3.3E-08 50.7 6.1 74 25-104 148-222 (390)
241 PRK00178 tolB translocation pr 97.1 0.01 2.2E-07 46.9 11.0 78 9-93 180-260 (430)
242 KOG1517 Guanine nucleotide bin 97.1 0.0014 3E-08 56.7 6.3 91 1-100 1274-1376(1387)
243 KOG1240 Protein kinase contain 97.1 0.012 2.7E-07 51.7 11.8 115 1-120 1066-1250(1431)
244 KOG4227 WD40 repeat protein [G 97.1 0.0011 2.3E-08 52.0 5.0 71 24-99 52-129 (609)
245 PF11768 DUF3312: Protein of u 97.1 0.003 6.6E-08 51.3 7.6 55 1-64 276-330 (545)
246 KOG0974 WD-repeat protein WDR6 97.1 0.0035 7.6E-08 53.7 8.2 92 2-102 193-285 (967)
247 KOG4227 WD40 repeat protein [G 97.0 0.0044 9.5E-08 48.7 7.9 91 2-97 74-171 (609)
248 PRK01029 tolB translocation pr 97.0 0.0084 1.8E-07 47.7 9.8 60 35-95 328-390 (428)
249 PRK11028 6-phosphogluconolacto 97.0 0.015 3.2E-07 44.2 10.3 90 5-95 196-293 (330)
250 PRK04792 tolB translocation pr 96.9 0.01 2.3E-07 47.4 9.8 83 6-95 240-325 (448)
251 PF02239 Cytochrom_D1: Cytochr 96.9 0.016 3.4E-07 45.4 10.3 87 2-96 54-148 (369)
252 PF12894 Apc4_WD40: Anaphase-p 96.9 0.004 8.6E-08 34.3 4.8 32 35-67 13-44 (47)
253 KOG4640 Anaphase-promoting com 96.8 0.0063 1.4E-07 50.0 7.3 74 4-85 40-115 (665)
254 TIGR02800 propeller_TolB tol-p 96.8 0.016 3.5E-07 45.2 9.4 86 5-97 255-343 (417)
255 TIGR02658 TTQ_MADH_Hv methylam 96.7 0.026 5.6E-07 44.0 10.2 80 6-94 27-123 (352)
256 KOG1064 RAVE (regulator of V-A 96.7 0.0016 3.5E-08 59.0 3.7 81 3-100 2312-2393(2439)
257 PRK00178 tolB translocation pr 96.7 0.019 4.2E-07 45.3 9.4 60 35-95 244-306 (430)
258 KOG2695 WD40 repeat protein [G 96.6 0.0059 1.3E-07 47.1 5.9 87 2-97 270-367 (425)
259 KOG2066 Vacuolar assembly/sort 96.6 0.015 3.2E-07 49.1 8.6 85 1-97 88-180 (846)
260 KOG1645 RING-finger-containing 96.6 0.011 2.3E-07 46.5 7.2 82 23-110 188-271 (463)
261 PF07433 DUF1513: Protein of u 96.6 0.031 6.7E-07 42.7 9.6 80 11-95 31-118 (305)
262 KOG0280 Uncharacterized conser 96.6 0.017 3.6E-07 43.8 7.9 78 1-86 183-264 (339)
263 KOG3914 WD repeat protein WDR4 96.6 0.0032 7E-08 48.9 4.2 64 2-72 169-232 (390)
264 KOG4714 Nucleoporin [Nuclear s 96.6 0.0013 2.7E-08 49.0 1.8 57 1-64 197-255 (319)
265 KOG1334 WD40 repeat protein [G 96.6 0.0015 3.2E-08 52.2 2.3 71 23-96 386-457 (559)
266 PRK04792 tolB translocation pr 96.5 0.031 6.7E-07 44.7 9.8 59 35-94 219-280 (448)
267 KOG1832 HIV-1 Vpr-binding prot 96.5 0.0063 1.4E-07 52.2 5.9 72 21-97 1094-1165(1516)
268 KOG1275 PAB-dependent poly(A) 96.5 0.0076 1.6E-07 51.6 6.3 77 1-87 192-277 (1118)
269 KOG4532 WD40-like repeat conta 96.5 0.086 1.9E-06 39.7 11.0 54 35-88 205-263 (344)
270 KOG4640 Anaphase-promoting com 96.4 0.016 3.5E-07 47.7 7.5 69 35-104 22-91 (665)
271 KOG2321 WD40 repeat protein [G 96.4 0.029 6.3E-07 46.0 8.7 90 1-93 192-291 (703)
272 KOG1064 RAVE (regulator of V-A 96.2 0.011 2.5E-07 53.9 5.9 98 1-105 2225-2366(2439)
273 KOG2695 WD40 repeat protein [G 96.1 0.014 3E-07 45.1 5.2 77 2-85 317-402 (425)
274 PF08553 VID27: VID27 cytoplas 96.1 0.044 9.6E-07 46.9 8.7 57 35-92 579-635 (794)
275 PRK01029 tolB translocation pr 96.1 0.071 1.5E-06 42.5 9.5 61 35-95 232-300 (428)
276 KOG4532 WD40-like repeat conta 96.1 0.11 2.4E-06 39.2 9.7 69 35-103 160-231 (344)
277 smart00320 WD40 WD40 repeats. 96.1 0.02 4.4E-07 27.4 4.3 33 66-98 3-35 (40)
278 KOG4190 Uncharacterized conser 96.0 0.0089 1.9E-07 49.0 4.1 62 1-69 752-818 (1034)
279 KOG1334 WD40 repeat protein [G 95.9 0.023 5.1E-07 45.6 5.6 42 21-67 135-176 (559)
280 KOG2079 Vacuolar assembly/sort 95.8 0.013 2.9E-07 50.8 4.6 67 27-93 124-193 (1206)
281 PF10282 Lactonase: Lactonase, 95.8 0.18 4E-06 38.8 10.3 84 6-94 13-105 (345)
282 COG4946 Uncharacterized protei 95.7 0.09 2E-06 42.5 8.5 79 6-90 421-503 (668)
283 KOG2041 WD40 repeat protein [G 95.7 0.037 8E-07 46.7 6.4 90 1-95 31-135 (1189)
284 KOG4497 Uncharacterized conser 95.6 0.12 2.6E-06 40.0 8.5 86 9-101 343-428 (447)
285 PRK04043 tolB translocation pr 95.6 0.2 4.4E-06 39.9 10.3 80 9-95 214-296 (419)
286 KOG2314 Translation initiation 95.5 0.056 1.2E-06 44.2 6.7 61 35-95 494-557 (698)
287 PF10282 Lactonase: Lactonase, 95.4 0.55 1.2E-05 36.2 11.7 85 4-93 60-161 (345)
288 COG2706 3-carboxymuconate cycl 95.3 0.71 1.5E-05 35.8 11.7 84 5-93 63-162 (346)
289 KOG4190 Uncharacterized conser 95.3 0.016 3.4E-07 47.6 2.8 70 21-95 728-804 (1034)
290 KOG1645 RING-finger-containing 95.1 0.066 1.4E-06 42.2 5.8 75 2-84 212-290 (463)
291 KOG2315 Predicted translation 95.0 0.43 9.3E-06 39.1 10.2 60 35-97 272-333 (566)
292 PF00930 DPPIV_N: Dipeptidyl p 95.0 0.24 5.3E-06 38.2 8.7 81 9-97 24-122 (353)
293 PF15492 Nbas_N: Neuroblastoma 95.0 0.54 1.2E-05 35.5 10.0 29 35-63 45-73 (282)
294 KOG2066 Vacuolar assembly/sort 94.9 0.12 2.6E-06 43.9 7.0 54 42-96 80-138 (846)
295 KOG1275 PAB-dependent poly(A) 94.7 0.29 6.4E-06 42.4 8.9 73 13-94 162-234 (1118)
296 KOG3617 WD40 and TPR repeat-co 94.6 0.074 1.6E-06 45.8 5.2 59 35-93 61-119 (1416)
297 PF15492 Nbas_N: Neuroblastoma 94.4 0.1 2.2E-06 39.3 4.9 39 34-72 230-268 (282)
298 COG2706 3-carboxymuconate cycl 94.3 1.2 2.7E-05 34.5 10.7 83 6-93 16-106 (346)
299 TIGR03300 assembly_YfgL outer 94.2 0.25 5.5E-06 38.2 7.1 69 2-78 285-353 (377)
300 COG0823 TolB Periplasmic compo 93.8 0.45 9.7E-06 38.1 7.9 92 10-108 220-314 (425)
301 KOG3621 WD40 repeat-containing 93.8 0.12 2.5E-06 43.3 4.6 61 35-95 78-144 (726)
302 PRK04043 tolB translocation pr 93.7 1.5 3.3E-05 34.9 10.9 60 35-95 189-252 (419)
303 PLN02919 haloacid dehalogenase 93.7 1.6 3.5E-05 38.9 11.9 62 36-97 806-880 (1057)
304 KOG2444 WD40 repeat protein [G 93.5 0.35 7.5E-06 35.5 6.2 91 1-97 75-169 (238)
305 TIGR02658 TTQ_MADH_Hv methylam 93.3 0.72 1.6E-05 36.1 8.2 57 9-71 280-338 (352)
306 PF04762 IKI3: IKI3 family; I 93.3 0.84 1.8E-05 40.1 9.4 64 34-98 76-143 (928)
307 KOG1912 WD40 repeat protein [G 93.3 0.72 1.6E-05 39.6 8.4 88 3-97 86-178 (1062)
308 COG3490 Uncharacterized protei 93.1 0.95 2.1E-05 34.6 8.2 81 12-95 95-181 (366)
309 KOG4499 Ca2+-binding protein R 93.0 2.9 6.3E-05 31.3 12.1 48 37-84 215-262 (310)
310 KOG1912 WD40 repeat protein [G 93.0 0.2 4.3E-06 42.8 4.9 68 13-85 40-119 (1062)
311 PF08450 SGL: SMP-30/Gluconola 92.9 2.6 5.7E-05 30.5 11.5 57 36-93 186-244 (246)
312 KOG3621 WD40 repeat-containing 92.9 0.43 9.4E-06 40.1 6.6 81 2-84 94-179 (726)
313 PF08450 SGL: SMP-30/Gluconola 92.8 2.7 5.9E-05 30.4 10.7 80 13-94 65-152 (246)
314 KOG0309 Conserved WD40 repeat- 92.0 0.28 6.1E-06 41.8 4.6 72 17-93 103-177 (1081)
315 COG5354 Uncharacterized protei 91.8 0.2 4.4E-06 40.6 3.5 58 32-92 31-88 (561)
316 KOG2314 Translation initiation 91.7 0.35 7.5E-06 39.9 4.6 59 32-93 209-267 (698)
317 PF10313 DUF2415: Uncharacteri 91.5 1.2 2.6E-05 24.0 5.2 30 35-64 2-34 (43)
318 COG0823 TolB Periplasmic compo 91.4 0.56 1.2E-05 37.5 5.6 85 3-94 257-344 (425)
319 KOG4649 PQQ (pyrrolo-quinoline 91.2 2.1 4.5E-05 32.5 8.0 70 11-85 76-145 (354)
320 PF04053 Coatomer_WDAD: Coatom 91.0 1 2.2E-05 36.3 6.7 51 45-98 117-167 (443)
321 PF07433 DUF1513: Protein of u 90.9 4.2 9.1E-05 31.2 9.6 81 5-92 76-179 (305)
322 PF07569 Hira: TUP1-like enhan 90.9 2.4 5.2E-05 30.8 8.1 54 41-94 18-85 (219)
323 COG5354 Uncharacterized protei 90.6 3.7 8E-05 33.6 9.3 60 35-97 276-337 (561)
324 PF05096 Glu_cyclase_2: Glutam 90.5 6.1 0.00013 29.7 10.9 93 4-97 145-253 (264)
325 KOG1008 Uncharacterized conser 90.5 0.15 3.2E-06 42.6 1.5 91 1-96 75-175 (783)
326 KOG2395 Protein involved in va 90.4 2 4.3E-05 35.5 7.7 63 35-99 432-494 (644)
327 PF13360 PQQ_2: PQQ-like domai 90.4 1.5 3.2E-05 31.2 6.6 63 5-73 2-64 (238)
328 PF12894 Apc4_WD40: Anaphase-p 90.0 0.71 1.5E-05 25.3 3.6 24 75-98 11-34 (47)
329 KOG1354 Serine/threonine prote 89.9 1.3 2.8E-05 34.6 6.1 68 30-98 161-237 (433)
330 PF06433 Me-amine-dh_H: Methyl 89.9 2.7 5.8E-05 32.8 7.8 64 5-74 266-331 (342)
331 KOG1409 Uncharacterized conser 89.2 1.9 4.1E-05 33.7 6.5 89 2-96 42-135 (404)
332 PF15390 DUF4613: Domain of un 89.0 6.8 0.00015 32.9 9.9 86 7-95 83-175 (671)
333 KOG1354 Serine/threonine prote 89.0 2.4 5.1E-05 33.2 6.9 57 9-65 294-361 (433)
334 KOG2041 WD40 repeat protein [G 88.9 1.2 2.6E-05 38.1 5.7 59 35-93 16-89 (1189)
335 KOG0882 Cyclophilin-related pe 88.0 0.29 6.3E-06 39.3 1.6 21 74-94 143-163 (558)
336 KOG1920 IkappaB kinase complex 87.9 4.4 9.6E-05 36.4 8.6 63 35-98 70-132 (1265)
337 TIGR03300 assembly_YfgL outer 87.7 5.3 0.00011 30.8 8.4 61 2-71 71-131 (377)
338 PF08553 VID27: VID27 cytoplas 87.4 0.74 1.6E-05 39.7 3.7 54 1-62 593-646 (794)
339 KOG3617 WD40 and TPR repeat-co 87.0 1.6 3.5E-05 38.0 5.4 34 31-64 99-132 (1416)
340 PF14761 HPS3_N: Hermansky-Pud 86.7 3.7 8.1E-05 29.9 6.5 47 46-93 29-77 (215)
341 PRK02888 nitrous-oxide reducta 86.5 11 0.00024 31.8 9.9 40 55-95 296-340 (635)
342 PRK02888 nitrous-oxide reducta 85.8 8.9 0.00019 32.4 9.0 58 35-93 322-392 (635)
343 TIGR02276 beta_rpt_yvtn 40-res 85.5 3.4 7.3E-05 21.0 5.2 40 43-83 1-41 (42)
344 KOG0309 Conserved WD40 repeat- 85.3 1.2 2.7E-05 38.1 3.9 77 2-85 133-211 (1081)
345 KOG1832 HIV-1 Vpr-binding prot 84.1 0.32 7E-06 42.3 0.1 76 1-87 1118-1196(1516)
346 PF06433 Me-amine-dh_H: Methyl 83.9 19 0.0004 28.2 9.5 77 9-92 18-111 (342)
347 PF11715 Nup160: Nucleoporin N 83.9 3 6.6E-05 34.1 5.6 36 36-71 217-256 (547)
348 PF12234 Rav1p_C: RAVE protein 83.4 12 0.00026 31.7 8.8 80 12-96 55-149 (631)
349 PF06977 SdiA-regulated: SdiA- 83.1 11 0.00023 28.1 7.7 58 35-93 172-239 (248)
350 COG3386 Gluconolactonase [Carb 82.3 13 0.00029 28.5 8.2 61 35-95 112-182 (307)
351 KOG2114 Vacuolar assembly/sort 82.2 12 0.00025 32.8 8.3 58 35-93 173-232 (933)
352 KOG0882 Cyclophilin-related pe 82.1 5.9 0.00013 32.2 6.3 85 13-102 127-228 (558)
353 PF14783 BBS2_Mid: Ciliary BBS 82.1 11 0.00025 24.5 9.6 54 40-97 9-63 (111)
354 PF14655 RAB3GAP2_N: Rab3 GTPa 82.0 4.6 9.9E-05 32.4 5.7 49 21-74 300-348 (415)
355 COG3386 Gluconolactonase [Carb 82.0 21 0.00045 27.4 10.4 79 9-93 144-230 (307)
356 PF02897 Peptidase_S9_N: Proly 81.8 16 0.00034 28.6 8.7 60 36-97 126-191 (414)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.6 14 0.0003 30.5 8.6 75 11-91 444-519 (527)
358 PRK13616 lipoprotein LpqB; Pro 81.5 11 0.00023 31.7 7.9 57 35-94 398-466 (591)
359 PF04841 Vps16_N: Vps16, N-ter 81.0 26 0.00056 27.9 10.0 53 35-87 218-271 (410)
360 PF00930 DPPIV_N: Dipeptidyl p 80.4 23 0.00051 27.2 9.1 85 5-95 257-347 (353)
361 COG5170 CDC55 Serine/threonine 79.6 5.7 0.00012 30.9 5.3 69 35-104 223-308 (460)
362 PF14783 BBS2_Mid: Ciliary BBS 79.5 15 0.00032 24.0 10.6 83 1-97 20-106 (111)
363 PRK11138 outer membrane biogen 79.4 10 0.00022 29.6 6.9 29 45-73 335-363 (394)
364 KOG2114 Vacuolar assembly/sort 79.2 6 0.00013 34.4 5.7 87 2-96 41-146 (933)
365 KOG4649 PQQ (pyrrolo-quinoline 78.5 25 0.00053 26.9 8.2 53 45-97 63-115 (354)
366 PF13360 PQQ_2: PQQ-like domai 77.7 22 0.00047 25.1 9.8 68 3-74 83-151 (238)
367 PLN02919 haloacid dehalogenase 77.7 10 0.00022 34.0 7.0 33 35-67 860-892 (1057)
368 PF14870 PSII_BNR: Photosynthe 77.6 26 0.00056 26.9 8.4 58 35-93 146-204 (302)
369 COG3490 Uncharacterized protei 77.2 27 0.0006 27.0 8.2 89 13-106 145-260 (366)
370 cd00216 PQQ_DH Dehydrogenases 75.9 30 0.00064 28.1 8.8 84 5-91 365-453 (488)
371 PF04762 IKI3: IKI3 family; I 75.3 20 0.00044 31.8 8.1 61 36-96 259-325 (928)
372 KOG2444 WD40 repeat protein [G 74.4 4.1 8.8E-05 30.0 3.1 56 1-63 119-177 (238)
373 COG3823 Glutamine cyclotransfe 74.2 30 0.00065 25.5 7.5 100 5-107 147-259 (262)
374 smart00564 PQQ beta-propeller 72.7 9.1 0.0002 18.3 4.0 25 46-70 7-31 (33)
375 PF03088 Str_synth: Strictosid 71.9 21 0.00046 22.2 7.3 40 53-93 35-74 (89)
376 COG5167 VID27 Protein involved 71.3 9.8 0.00021 31.7 4.9 47 46-92 574-620 (776)
377 COG3204 Uncharacterized protei 71.2 18 0.00038 27.9 6.0 57 35-91 87-144 (316)
378 PRK11138 outer membrane biogen 71.2 14 0.0003 28.9 5.7 62 2-72 126-187 (394)
379 KOG1916 Nuclear protein, conta 70.8 4.3 9.3E-05 35.8 2.9 64 36-100 183-260 (1283)
380 KOG3630 Nuclear pore complex, 70.5 13 0.00029 33.6 5.8 56 35-91 200-259 (1405)
381 PF10647 Gmad1: Lipoprotein Lp 69.6 31 0.00067 25.4 7.0 63 35-97 113-187 (253)
382 PF03178 CPSF_A: CPSF A subuni 69.5 46 0.001 25.1 8.3 29 35-66 90-118 (321)
383 PF14655 RAB3GAP2_N: Rab3 GTPa 69.4 15 0.00033 29.4 5.6 64 4-72 325-407 (415)
384 PF07676 PD40: WD40-like Beta 68.9 13 0.00028 18.6 4.3 26 35-60 10-38 (39)
385 KOG2079 Vacuolar assembly/sort 68.6 9.2 0.0002 34.2 4.4 57 43-99 97-154 (1206)
386 PRK13616 lipoprotein LpqB; Pro 68.6 44 0.00096 28.1 8.3 58 35-93 449-514 (591)
387 PF03088 Str_synth: Strictosid 68.2 26 0.00057 21.8 6.1 40 6-51 35-74 (89)
388 KOG2395 Protein involved in va 67.4 6.9 0.00015 32.4 3.3 54 1-62 446-499 (644)
389 PF14583 Pectate_lyase22: Olig 66.7 13 0.00029 29.5 4.7 82 13-94 15-99 (386)
390 KOG3616 Selective LIM binding 66.6 16 0.00036 31.9 5.4 31 35-65 16-46 (1636)
391 PF10168 Nup88: Nuclear pore c 64.4 96 0.0021 26.9 11.1 79 30-108 81-182 (717)
392 PF06977 SdiA-regulated: SdiA- 62.1 63 0.0014 24.0 8.1 57 35-92 23-81 (248)
393 PF01011 PQQ: PQQ enzyme repea 61.4 20 0.00044 18.1 4.2 25 48-72 3-27 (38)
394 PF08728 CRT10: CRT10; InterP 61.2 76 0.0016 27.5 8.4 53 35-87 165-222 (717)
395 PRK10115 protease 2; Provision 60.7 56 0.0012 27.9 7.7 61 34-96 127-192 (686)
396 COG3391 Uncharacterized conser 60.6 80 0.0017 24.7 10.6 59 35-94 117-178 (381)
397 PF04841 Vps16_N: Vps16, N-ter 59.6 58 0.0013 25.9 7.2 28 35-63 82-109 (410)
398 PF04053 Coatomer_WDAD: Coatom 59.0 49 0.0011 26.8 6.8 71 6-86 126-207 (443)
399 COG5170 CDC55 Serine/threonine 58.9 17 0.00037 28.4 3.9 65 30-95 169-242 (460)
400 KOG2109 WD40 repeat protein [G 58.4 11 0.00024 32.1 3.0 78 16-98 303-391 (788)
401 PF07995 GSDH: Glucose / Sorbo 56.7 88 0.0019 24.0 8.8 58 35-94 3-71 (331)
402 KOG1920 IkappaB kinase complex 56.6 30 0.00064 31.5 5.4 54 38-93 200-259 (1265)
403 PF10168 Nup88: Nuclear pore c 56.0 58 0.0012 28.2 7.0 31 34-64 147-180 (717)
404 PF08596 Lgl_C: Lethal giant l 55.5 87 0.0019 24.9 7.6 57 22-84 80-144 (395)
405 PF01436 NHL: NHL repeat; Int 55.2 23 0.00049 16.7 4.1 26 35-60 3-28 (28)
406 PF11635 Med16: Mediator compl 53.8 1.3E+02 0.0029 26.1 8.8 66 33-98 259-343 (753)
407 cd03444 Thioesterase_II_repeat 53.1 41 0.00089 21.2 4.5 20 36-55 83-102 (104)
408 TIGR02604 Piru_Ver_Nterm putat 52.9 58 0.0013 25.3 6.2 58 35-93 125-201 (367)
409 COG3391 Uncharacterized conser 52.7 1.1E+02 0.0024 23.9 10.6 83 9-97 141-228 (381)
410 PF12341 DUF3639: Protein of u 52.4 27 0.00058 16.7 3.3 24 35-60 3-26 (27)
411 PF03178 CPSF_A: CPSF A subuni 51.8 1E+02 0.0022 23.2 10.2 88 2-96 103-193 (321)
412 PRK13684 Ycf48-like protein; P 51.4 1.1E+02 0.0023 23.6 7.3 58 35-94 174-233 (334)
413 PF14583 Pectate_lyase22: Olig 51.2 1.1E+02 0.0023 24.6 7.3 83 4-91 56-140 (386)
414 KOG4441 Proteins containing BT 50.8 1.3E+02 0.0027 25.3 8.1 60 37-99 326-393 (571)
415 PF13570 PQQ_3: PQQ-like domai 48.9 36 0.00077 17.2 3.3 20 45-64 21-40 (40)
416 COG4590 ABC-type uncharacteriz 48.6 1.1E+02 0.0025 25.4 7.1 49 46-95 329-377 (733)
417 PF02897 Peptidase_S9_N: Proly 47.9 1.3E+02 0.0029 23.4 12.4 84 9-99 151-250 (414)
418 PF12234 Rav1p_C: RAVE protein 47.8 1.8E+02 0.0039 24.9 11.0 59 35-94 31-93 (631)
419 KOG1916 Nuclear protein, conta 46.8 17 0.00037 32.3 2.5 44 41-84 243-292 (1283)
420 TIGR03606 non_repeat_PQQ dehyd 46.6 1.6E+02 0.0035 24.0 7.8 53 35-87 31-90 (454)
421 PF14870 PSII_BNR: Photosynthe 46.5 1.3E+02 0.0029 23.0 8.5 61 35-96 188-253 (302)
422 PF15390 DUF4613: Domain of un 45.6 27 0.00059 29.5 3.3 30 35-64 157-187 (671)
423 TIGR02604 Piru_Ver_Nterm putat 44.9 1.3E+02 0.0029 23.3 7.0 58 35-93 15-88 (367)
424 PF00780 CNH: CNH domain; Int 43.6 79 0.0017 23.0 5.4 30 35-65 37-66 (275)
425 PF08596 Lgl_C: Lethal giant l 43.1 57 0.0012 26.0 4.8 56 44-99 271-330 (395)
426 KOG3630 Nuclear pore complex, 42.6 19 0.00041 32.7 2.2 66 36-102 158-225 (1405)
427 PRK10526 acyl-CoA thioesterase 41.0 90 0.002 23.5 5.4 25 36-60 261-285 (286)
428 PF03022 MRJP: Major royal jel 39.6 1.6E+02 0.0036 22.1 8.9 59 35-93 187-253 (287)
429 PF05787 DUF839: Bacterial pro 38.9 1.5E+02 0.0033 24.6 6.8 57 36-92 438-518 (524)
430 PF10433 MMS1_N: Mono-function 38.7 2.1E+02 0.0046 23.2 8.4 63 2-64 6-74 (504)
431 TIGR03074 PQQ_membr_DH membran 38.6 2.6E+02 0.0057 24.5 8.3 46 44-89 690-738 (764)
432 COG1520 FOG: WD40-like repeat 37.8 97 0.0021 23.9 5.3 65 3-75 75-141 (370)
433 KOG2377 Uncharacterized conser 37.4 1.1E+02 0.0025 25.3 5.6 53 35-87 68-124 (657)
434 TIGR02171 Fb_sc_TIGR02171 Fibr 36.0 2.7E+02 0.0059 25.0 7.9 57 35-91 351-414 (912)
435 PF07250 Glyoxal_oxid_N: Glyox 35.8 1.6E+02 0.0034 21.9 5.8 63 37-99 70-141 (243)
436 PF12657 TFIIIC_delta: Transcr 35.1 79 0.0017 21.8 4.0 29 35-63 87-121 (173)
437 COG1946 TesB Acyl-CoA thioeste 34.8 1.2E+02 0.0025 23.3 5.1 57 2-60 227-285 (289)
438 cd00216 PQQ_DH Dehydrogenases 34.1 1.1E+02 0.0023 24.9 5.2 68 2-72 67-137 (488)
439 PF12768 Rax2: Cortical protei 34.1 83 0.0018 23.9 4.2 38 56-93 17-54 (281)
440 PHA02713 hypothetical protein; 32.7 2.4E+02 0.0053 23.4 7.1 95 9-111 433-536 (557)
441 TIGR03075 PQQ_enz_alc_DH PQQ-d 32.2 2.9E+02 0.0064 22.8 7.8 60 9-68 272-338 (527)
442 KOG4499 Ca2+-binding protein R 30.8 1.7E+02 0.0036 22.2 5.2 39 11-54 236-276 (310)
443 TIGR03074 PQQ_membr_DH membran 30.6 2.6E+02 0.0056 24.5 7.1 68 2-71 200-286 (764)
444 TIGR00189 tesB acyl-CoA thioes 30.1 1.4E+02 0.003 21.9 4.9 22 36-57 249-270 (271)
445 PF10647 Gmad1: Lipoprotein Lp 30.0 2.3E+02 0.0049 20.8 9.2 60 35-94 67-130 (253)
446 PHA02790 Kelch-like protein; P 28.9 3.2E+02 0.0069 22.2 7.1 53 44-96 318-372 (480)
447 KOG2109 WD40 repeat protein [G 28.6 43 0.00094 28.7 2.0 42 59-100 299-340 (788)
448 PF05096 Glu_cyclase_2: Glutam 27.4 2.7E+02 0.006 21.0 7.9 52 12-71 114-165 (264)
449 TIGR02608 delta_60_rpt delta-6 27.2 1.2E+02 0.0027 17.0 3.3 21 77-97 2-22 (55)
450 PF14269 Arylsulfotran_2: Aryl 26.7 1.9E+02 0.0042 22.0 5.2 40 35-74 145-184 (299)
451 PF10584 Proteasome_A_N: Prote 25.9 17 0.00037 16.8 -0.4 8 82-89 7-14 (23)
452 PF10214 Rrn6: RNA polymerase 25.6 3.9E+02 0.0085 23.3 7.3 28 35-62 147-175 (765)
453 PF13449 Phytase-like: Esteras 25.3 3.1E+02 0.0067 20.9 9.9 66 30-95 143-234 (326)
454 PF00780 CNH: CNH domain; Int 25.2 2.5E+02 0.0054 20.3 5.5 47 44-92 6-52 (275)
455 KOG2377 Uncharacterized conser 24.7 4.2E+02 0.0091 22.2 7.5 59 37-96 26-87 (657)
456 PF14761 HPS3_N: Hermansky-Pud 23.8 1.8E+02 0.0039 21.3 4.3 43 6-54 38-80 (215)
457 PF08954 DUF1900: Domain of un 23.6 2.3E+02 0.005 19.0 4.5 51 35-85 12-66 (136)
458 KOG3522 Predicted guanine nucl 23.1 1.5E+02 0.0032 26.3 4.2 50 48-97 638-690 (925)
459 PF14157 YmzC: YmzC-like prote 22.7 1.3E+02 0.0027 17.6 2.7 19 3-21 36-54 (63)
460 KOG4460 Nuclear pore complex, 21.9 3.6E+02 0.0078 23.0 6.0 30 31-60 101-130 (741)
461 KOG3611 Semaphorins [Signal tr 21.9 2.2E+02 0.0047 24.9 5.0 52 1-59 430-489 (737)
462 COG4880 Secreted protein conta 21.8 4.2E+02 0.009 22.0 6.2 88 1-91 488-581 (603)
463 PF07995 GSDH: Glucose / Sorbo 21.4 3.6E+02 0.0078 20.6 5.9 60 35-94 254-324 (331)
464 PHA02790 Kelch-like protein; P 21.3 4.5E+02 0.0097 21.3 7.0 22 44-65 362-386 (480)
465 PF08801 Nucleoporin_N: Nup133 20.4 1.6E+02 0.0034 23.3 3.8 30 35-64 191-220 (422)
466 COG1520 FOG: WD40-like repeat 20.2 4.1E+02 0.0089 20.4 6.2 61 2-69 117-177 (370)
No 1
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.5e-23 Score=154.65 Aligned_cols=129 Identities=53% Similarity=1.018 Sum_probs=120.9
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeC----CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRD----GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ 76 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~----~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 76 (136)
+||+||.+.|.++|....+..++|+||+. ...+|+|+.|+|||....|++++.||.+.+||-+....+.+...|..
T Consensus 215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q 294 (347)
T KOG0647|consen 215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ 294 (347)
T ss_pred eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence 58999999999999977799999999995 44589999999999999999999999999999998888899999999
Q ss_pred ceeEEEEccCCCEEEEEEcccccccccccCCCCCcceEEEEcCCcccccccCCC
Q 041215 77 PIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRA 130 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (136)
+|.|.+|+.+|.++|.+.+|||++|++...|. .+.+|.+|++..+|+|||+||
T Consensus 295 pItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~-~~~~I~l~~~~~~evK~r~~k 347 (347)
T KOG0647|consen 295 PITCCSFNRNGSIFAYALGYDWSKGHEGNNPQ-YKPQIFLHPVSTEEVKPRPKK 347 (347)
T ss_pred ccceeEecCCCCEEEEEeecccccccccCCCC-CCCeEEEeeccccccccCCCC
Confidence 99999999999999999999999999999999 667999999999999999986
No 2
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=6.2e-17 Score=119.87 Aligned_cols=124 Identities=43% Similarity=0.732 Sum_probs=109.1
Q ss_pred CCceeceEEEEEeeCC--CCcceeEEEeeeC----CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215 1 VGSIEGRVGVHHLDDS--QQSKNFTFKCHRD----GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~--~~~~~~~l~~h~~----~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
++|.||+|.+-++|.. .....+.|+||+. -...|+|++|+|||-...|+||+.||.|.+||..+.+.+.++...
T Consensus 194 ~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 194 VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred EEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 5799999999999886 3567899999975 566789999999999999999999999999999999989998877
Q ss_pred CCceeEEEEccCCCEEEEEEcccccccccccCCCCCcceEEEEcCCccccccc
Q 041215 75 GQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGK 127 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (136)
...|.+++|+.+|..||.|+++-+..+-.- +++...+.+|.+.+.|.+||
T Consensus 274 ~~SI~slsfs~dG~~LAia~sy~ye~~~~~---~~~~~~i~I~~l~d~e~~pk 323 (323)
T KOG1036|consen 274 ETSISSLSFSMDGSLLAIASSYQYERADTP---THERNAIFIRDLTDYETKPK 323 (323)
T ss_pred CCceEEEEeccCCCeEEEEechhhhcCCCC---CCCCCceEEEeccccccCCC
Confidence 788999999999999999999887754433 34779999999999999997
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.55 E-value=2.2e-14 Score=116.33 Aligned_cols=92 Identities=24% Similarity=0.362 Sum_probs=86.9
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.||.|.++++ ||..++.....|.+|.+ +|.+++|+|.|++|++|+.|+.|.+||+.++..+.++.+|.+.|.+
T Consensus 552 TGSsD~tVRl--WDv~~G~~VRiF~GH~~-----~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~S 624 (707)
T KOG0263|consen 552 TGSSDRTVRL--WDVSTGNSVRIFTGHKG-----PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYS 624 (707)
T ss_pred cCCCCceEEE--EEcCCCcEEEEecCCCC-----ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeE
Confidence 3789999999 88899999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEccccc
Q 041215 81 STFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~ 99 (136)
|.|+.+|..||+|+.|.-.
T Consensus 625 lsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 625 LSFSRDGNVLASGGADNSV 643 (707)
T ss_pred EEEecCCCEEEecCCCCeE
Confidence 9999999999998887743
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.55 E-value=1.1e-14 Score=118.04 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=83.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
||-|++-++|.. ....++..|.+|-+ .|.|++|||+..++++||.|.+|++||+.+|..+..|.+|.++|.++
T Consensus 511 as~D~tArLWs~--d~~~PlRifaghls-----DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 511 ASHDQTARLWST--DHNKPLRIFAGHLS-----DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL 583 (707)
T ss_pred cCCCceeeeeec--ccCCchhhhccccc-----ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence 678888888555 45788999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccc
Q 041215 82 TFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~ 99 (136)
+|||+|++|++|+.|.-.
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLI 601 (707)
T ss_pred EEcCCCceEeecccCCcE
Confidence 999999999998877633
No 5
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.55 E-value=4.5e-14 Score=112.26 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=83.0
Q ss_pred CceeceEEEEEeeC-CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDD-SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~-~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
|+.|++++| ||. ..+....++++|.. .|.+++|+|+++++++|+.|+.|++||+.++.++..+.+|.+.|.+
T Consensus 221 ~s~D~tiri--wd~~~~~~~~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 221 GSDDKTLRI--WDLKDDGRNLKTLKGHST-----YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred ecCCceEEE--eeccCCCeEEEEecCCCC-----ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 688999988 777 55688999999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEcccc
Q 041215 81 STFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~ 98 (136)
++|++++.++++++.|..
T Consensus 294 ~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGT 311 (456)
T ss_pred EEECCCCCEEEEcCCCcc
Confidence 999999999999866553
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.54 E-value=7e-14 Score=103.47 Aligned_cols=96 Identities=23% Similarity=0.280 Sum_probs=88.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
||-|.+..+ ||+++++....|.+|.+ .|-++++.| +++.+++|+.|...++||++.+.+++.|.+|.+.|++
T Consensus 162 ~SGD~TCal--WDie~g~~~~~f~GH~g-----DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINs 234 (343)
T KOG0286|consen 162 GSGDMTCAL--WDIETGQQTQVFHGHTG-----DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINS 234 (343)
T ss_pred cCCCceEEE--EEcccceEEEEecCCcc-----cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccce
Confidence 566667766 99999999999999999 999999999 8899999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEcccccccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
|+|.|+|.-+++|+.|..-..++.
T Consensus 235 v~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 235 VRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EEEccCCCeeeecCCCceeEEEee
Confidence 999999999999988887766655
No 7
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=1.1e-13 Score=104.80 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=84.9
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+||.|++|++ ||+.++..++++.+|.+ -|..++|+|.|++|+++.+|+++++||+.++.++.++..|...|++
T Consensus 309 s~SrDktIk~--wdv~tg~cL~tL~ghdn-----wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 309 SGSRDKTIKI--WDVSTGMCLFTLVGHDN-----WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred eecccceEEE--EeccCCeEEEEEecccc-----eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence 4799999998 88899999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEccc
Q 041215 81 STFNTDGSIFAYSVCYD 97 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd 97 (136)
+.|+.+..+++||+-|-
T Consensus 382 lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 382 LDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred EecCCCCceEEeccccc
Confidence 99999999999986543
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.51 E-value=2.2e-14 Score=110.11 Aligned_cols=92 Identities=21% Similarity=0.221 Sum_probs=85.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
+|-|.+=++ ||.+++..+....+|.. .|.+++|+|+|.++++|+.|..-+|||+.+|.++-.+.+|..+|.+|
T Consensus 279 asfD~tWRl--WD~~tk~ElL~QEGHs~-----~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V 351 (459)
T KOG0272|consen 279 ASFDSTWRL--WDLETKSELLLQEGHSK-----GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSV 351 (459)
T ss_pred cccccchhh--cccccchhhHhhccccc-----ccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeE
Confidence 566667666 88899998888899999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEcccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~ 100 (136)
+|+|+|..+|||++|+.-+
T Consensus 352 ~fsPNGy~lATgs~Dnt~k 370 (459)
T KOG0272|consen 352 AFSPNGYHLATGSSDNTCK 370 (459)
T ss_pred eECCCceEEeecCCCCcEE
Confidence 9999999999999999654
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.51 E-value=4.8e-14 Score=108.25 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=82.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.|...+| ||.+++..+..|.+|.. +|..++|+|+|..|++|+.|++++|||++....++++.+|..-|..|
T Consensus 321 GGlD~~~Rv--WDlRtgr~im~L~gH~k-----~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V 393 (459)
T KOG0272|consen 321 GGLDSLGRV--WDLRTGRCIMFLAGHIK-----EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV 393 (459)
T ss_pred cCccchhhe--eecccCcEEEEeccccc-----ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhhe
Confidence 677888888 88899999999999999 99999999999999999999999999999998999999999999999
Q ss_pred EEcc-CCCEEEEEEcccc
Q 041215 82 TFNT-DGSIFAYSVCYDW 98 (136)
Q Consensus 82 ~~sp-~~~~l~s~~~dd~ 98 (136)
.|+| .|.+|+||+-|..
T Consensus 394 k~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 394 KYSPQEGYFLVTASYDNT 411 (459)
T ss_pred EecccCCeEEEEcccCcc
Confidence 9998 6788888766653
No 10
>PTZ00421 coronin; Provisional
Probab=99.48 E-value=4.6e-13 Score=107.41 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=82.8
Q ss_pred CCceeceEEEEEeeCCC-----CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215 1 VGSIEGRVGVHHLDDSQ-----QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~-----~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
+||.||+|.+|.+.... ..++..+.+|.. .|.+++|+|++ .+|++++.|+.|++||+.++..+..+..|
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-----~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-----KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCC-----cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 37889999995543221 245678889999 99999999986 79999999999999999999888899999
Q ss_pred CCceeEEEEccCCCEEEEEEcccccccccc
Q 041215 75 GQPIPCSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
...|.+++|+|++.+|++++.|...+..+.
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDP 197 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEEC
Confidence 999999999999999999988876554443
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.47 E-value=1.3e-13 Score=105.64 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=96.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
+|.||+|.| ||-...++...+.+|.- .|.+++|||...++++++.|..|++||..++.++.++..|...|..+
T Consensus 198 ~SdDg~iki--Wdf~~~kee~vL~GHgw-----dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~ 270 (464)
T KOG0284|consen 198 CSDDGTIKI--WDFRMPKEERVLRGHGW-----DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAV 270 (464)
T ss_pred ecCCCeEEE--EeccCCchhheeccCCC-----CcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEE
Confidence 688999999 55577788888888888 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccccccccc-------CCCCCcceEEE--EcCCcccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKGAENH-------NPATAKTYIYL--HLPQETEV 124 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~ 124 (136)
.|+|++.+|++++.|--.+.++.. .+.|++....+ ||+.+..+
T Consensus 271 ~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 271 KFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred EEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 999999999999888765555443 33344433333 77776654
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=4.3e-13 Score=102.39 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=86.5
Q ss_pred CceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
||.|.++-+ |++. +.+++....+|+. .|+.+.|+||++++++++.|..|++||..+|+-+..|++|-+.|..
T Consensus 342 gsDd~tlfl--W~p~~~kkpi~rmtgHq~-----lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq 414 (480)
T KOG0271|consen 342 GSDDFTLFL--WNPFKSKKPITRMTGHQA-----LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ 414 (480)
T ss_pred ecCCceEEE--ecccccccchhhhhchhh-----heeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEE
Confidence 677888766 7764 4557777789999 9999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEccccccccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~~~~~~ 105 (136)
|+|+.|.++|++|+.|...+-++..
T Consensus 415 vawsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 415 VAWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred EEeccCccEEEEcCCCceEEEEEee
Confidence 9999999999999999988766553
No 13
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=4.4e-13 Score=102.35 Aligned_cols=89 Identities=15% Similarity=0.228 Sum_probs=83.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
||-|..|++ ||.++++.+.+|.+|-. +|-.++|+.|.++|++|+.|.++++|++.+.+..+.+++|.+.|.++
T Consensus 385 aSFDkSVkL--W~g~tGk~lasfRGHv~-----~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 385 ASFDKSVKL--WDGRTGKFLASFRGHVA-----AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV 457 (480)
T ss_pred eecccceee--eeCCCcchhhhhhhccc-----eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE
Confidence 566777877 88899999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccc
Q 041215 82 TFNTDGSIFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd 97 (136)
.|+|||..+++|+.|-
T Consensus 458 DwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 458 DWSPDGQRVASGGKDK 473 (480)
T ss_pred EecCCCceeecCCCce
Confidence 9999999999987764
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3e-12 Score=101.88 Aligned_cols=97 Identities=24% Similarity=0.338 Sum_probs=85.2
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc--eeeecccCCC--
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ--RLKAMSRCGQ-- 76 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~-- 76 (136)
+||.|++|+| ||.++++....|.+|.. .|++++|++++++|++++.|+.|++||+.++. ++..+..+..
T Consensus 263 Sgs~D~tvri--Wd~~~~~~~~~l~~hs~-----~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 263 SGSDDGTVRI--WDVRTGECVRKLKGHSD-----GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA 335 (456)
T ss_pred EecCCCcEEE--EeccCCeEEEeeeccCC-----ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC
Confidence 3789999999 88888999999999999 99999999999999999999999999999998 5677777643
Q ss_pred ceeEEEEccCCCEEEEEEcccccccccc
Q 041215 77 PIPCSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
++++++|+|++.+++++..|.+.+..+.
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDL 363 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEc
Confidence 5999999999999999888866655433
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.39 E-value=4.5e-12 Score=93.36 Aligned_cols=91 Identities=14% Similarity=0.223 Sum_probs=78.2
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--CCce
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--GQPI 78 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~~~v 78 (136)
.||+||++++ ||..+++....|.+|.. .|.+++|+++.+.+++|+.|.+|.+||+... +..++..+ .++|
T Consensus 80 S~swD~~lrl--WDl~~g~~t~~f~GH~~-----dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 80 SASWDGTLRL--WDLATGESTRRFVGHTK-----DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWV 151 (315)
T ss_pred eccccceEEE--EEecCCcEEEEEEecCC-----ceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcE
Confidence 3789999999 88888899999999999 9999999999999999999999999998754 55565554 7999
Q ss_pred eEEEEccC--CCEEEEEEccccc
Q 041215 79 PCSTFNTD--GSIFAYSVCYDWS 99 (136)
Q Consensus 79 ~~v~~sp~--~~~l~s~~~dd~~ 99 (136)
+|++|+|. ..++++++-|-..
T Consensus 152 scvrfsP~~~~p~Ivs~s~Dktv 174 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTV 174 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceE
Confidence 99999998 5688877666543
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.37 E-value=4.5e-12 Score=93.36 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=84.0
Q ss_pred CceeceEEEEEeeC---CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 2 GSIEGRVGVHHLDD---SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~---~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
+|.|.++.+|.+.- ..+.+...|.+|.. .|..+.++++|++.++++.|+++++||+.+++..++|.+|...|
T Consensus 34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-----~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dV 108 (315)
T KOG0279|consen 34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-----FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDV 108 (315)
T ss_pred cccceEEEEEEeccCccccCceeeeeeccce-----EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCce
Confidence 67888888866533 45777899999999 99999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEEcccccc
Q 041215 79 PCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
.+++|+++.+.+++|+-|...+
T Consensus 109 lsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 109 LSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred EEEEecCCCceeecCCCcceee
Confidence 9999999999999998877543
No 17
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.37 E-value=4.4e-12 Score=96.62 Aligned_cols=91 Identities=20% Similarity=0.326 Sum_probs=74.9
Q ss_pred CCceeceEEEEEeeCCCC--cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC---cceeeecccCC
Q 041215 1 VGSIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS---KQRLKAMSRCG 75 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~--~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~h~ 75 (136)
.||.||+|+| ||.+.+ +.....+.|.+ .|+-|+|+....+|++|++||+++|||+++ +..+.+|..|.
T Consensus 275 ScS~DgsIrI--WDiRs~~~~~~~~~kAh~s-----DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 275 SCSCDGSIRI--WDIRSGPKKAAVSTKAHNS-----DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred eeecCceEEE--EEecCCCccceeEeeccCC-----ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence 3789999999 666654 44555588999 999999998888999999999999999875 56788999999
Q ss_pred CceeEEEEccCCC-EEEEEEcccc
Q 041215 76 QPIPCSTFNTDGS-IFAYSVCYDW 98 (136)
Q Consensus 76 ~~v~~v~~sp~~~-~l~s~~~dd~ 98 (136)
.+|+||.|+|... .|++++.|+.
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCc
Confidence 9999999999765 5555555553
No 18
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.36 E-value=2.8e-12 Score=93.90 Aligned_cols=87 Identities=24% Similarity=0.381 Sum_probs=78.4
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
|.|.| +.-...++..+++.|.. .+-||.|+|+|++|++|+.|-.+.+||++..-++..++.+.-+|+.++||.
T Consensus 169 G~v~I--LsypsLkpv~si~AH~s-----nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 169 GCVEI--LSYPSLKPVQSIKAHPS-----NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH 241 (313)
T ss_pred ceEEE--EeccccccccccccCCc-----ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence 45555 44467889999999999 999999999999999999999999999999889999999999999999999
Q ss_pred CCCEEEEEEccccc
Q 041215 86 DGSIFAYSVCYDWS 99 (136)
Q Consensus 86 ~~~~l~s~~~dd~~ 99 (136)
+|++||+|+.|-+.
T Consensus 242 dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 242 DGRMLASASEDHFI 255 (313)
T ss_pred CcceeeccCccceE
Confidence 99999999887653
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.35 E-value=4.3e-12 Score=96.21 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=83.3
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+|+.||+|.| ||.......+.+ .|.. .|..+.|-+ ..+|+++..+|.|++||.++|+++.++.+|...|.+
T Consensus 303 ~G~vdG~i~i--yD~a~~~~R~~c-~he~-----~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 303 CGSVDGTIAI--YDLAASTLRHIC-EHED-----GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred cccccceEEE--Eecccchhheec-cCCC-----ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 5899999999 776666666665 4888 999999998 788999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEccccccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
++++|+.++++|++.|.-++-|.
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEe
Confidence 99999999999999988776554
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.34 E-value=9.8e-12 Score=96.85 Aligned_cols=89 Identities=21% Similarity=0.422 Sum_probs=70.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC-------------------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK------------------- 62 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~------------------- 62 (136)
.+.||.|.++.. ....+..++.+|.+ +|+++.|+|.+.+|+++++|+++++|+.
T Consensus 335 s~td~~i~V~kv--~~~~P~~t~~GH~g-----~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 335 SSTDGCIHVCKV--GEDRPVKTFIGHHG-----EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTI 407 (524)
T ss_pred cCCCceEEEEEe--cCCCcceeeecccC-----ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeE
Confidence 467888888555 44578888899999 9999999999999999999998888853
Q ss_pred --------------------------------CCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 63 --------------------------------DSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 63 --------------------------------~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
..+.+++.|..|..+|.+++|+|+++++|+|+-|.
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 33344556667888888888888888888876654
No 21
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.34 E-value=1.9e-12 Score=104.17 Aligned_cols=103 Identities=18% Similarity=0.301 Sum_probs=89.1
Q ss_pred CCceeceEEEEEeeCC-----CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215 1 VGSIEGRVGVHHLDDS-----QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~-----~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
||..||.|.+|.+.+. ...+...+..|.. .|..+.|||.. ..|++++.|.+|++||+.++.....+.+|
T Consensus 645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e-----KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH 719 (1012)
T KOG1445|consen 645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGE-----KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH 719 (1012)
T ss_pred ecccCceEEEEEeccCCCCcccCCcceeeecccc-----eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC
Confidence 6789999999888764 3456678899999 99999999988 78999999999999999999888899999
Q ss_pred CCceeEEEEccCCCEEEEEEcccccccccccCCC
Q 041215 75 GQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
.+.|..++|||+|+.+|+.+.|.-..-+.-...+
T Consensus 720 tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 720 TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred cCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 9999999999999999999999876544433333
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.34 E-value=3.7e-12 Score=96.70 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=89.8
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.||.|+++.| ||..+++...++.+|.. .|..+++++...++++++.|+.|++||++..+.+..+.+|.+.|.|
T Consensus 168 tgs~DrtikI--wDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~ 240 (460)
T KOG0285|consen 168 TGSADRTIKI--WDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYC 240 (460)
T ss_pred ecCCCceeEE--EEcccCeEEEeecchhh-----eeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEE
Confidence 3789999988 88899999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEccccccccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~~~~~~ 105 (136)
++.+|.-+.+++|+.|...+.-++.
T Consensus 241 L~lhPTldvl~t~grDst~RvWDiR 265 (460)
T KOG0285|consen 241 LDLHPTLDVLVTGGRDSTIRVWDIR 265 (460)
T ss_pred EeccccceeEEecCCcceEEEeeec
Confidence 9999999999999998866544443
No 23
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.33 E-value=9.6e-12 Score=90.84 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=65.9
Q ss_pred CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-ccCCCceeEEEEccCCCEEEEEEccccccccccc
Q 041215 30 GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 30 ~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~ 105 (136)
..-++.|.+.+++|+...+++|+.|..++.||+.++..+..+ .+|.++|+||.|+|+|...++|+.|+...+-+..
T Consensus 221 ~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 345567889999999999999999999999999999888876 8999999999999999999999888876544443
No 24
>PTZ00420 coronin; Provisional
Probab=99.33 E-value=2.1e-11 Score=99.06 Aligned_cols=97 Identities=14% Similarity=0.342 Sum_probs=75.4
Q ss_pred CCceeceEEEEEeeCCC------CcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeeccc
Q 041215 1 VGSIEGRVGVHHLDDSQ------QSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSR 73 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~------~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~ 73 (136)
+||.||+|++|.+.... ..+...+.+|.. .|.+++|+|++. .|++++.|+.|++||+.++..+..+.
T Consensus 92 SgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~-----~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~- 165 (568)
T PTZ00420 92 SGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK-----KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN- 165 (568)
T ss_pred EEeCCCeEEEEECCCCCccccccccceEEeecCCC-----cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-
Confidence 37889999995442211 123456788988 999999999986 46799999999999999988777664
Q ss_pred CCCceeEEEEccCCCEEEEEEccccccccc
Q 041215 74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
|...|.+++|+|+|.+|++++.|.....++
T Consensus 166 ~~~~V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 166 MPKKLSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence 567899999999999999887776444443
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.30 E-value=1.9e-11 Score=90.74 Aligned_cols=91 Identities=23% Similarity=0.330 Sum_probs=79.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--CCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--GQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~ 79 (136)
|+.|+.-.+ ||.+.+....+|.+|.+ .|++++|+|+|..+++|++|++.++||++..+.+..+... ..+|+
T Consensus 205 g~cD~~akl--WD~R~~~c~qtF~ghes-----DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 205 GGCDKSAKL--WDVRSGQCVQTFEGHES-----DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred cccccceee--eeccCcceeEeeccccc-----ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 677888776 89999999999999999 9999999999999999999999999999998777777533 58999
Q ss_pred EEEEccCCCEEEEEEcccccc
Q 041215 80 CSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~ 100 (136)
+|+||..|++|..| .+|+.-
T Consensus 278 Sv~FS~SGRlLfag-y~d~~c 297 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAG-YDDFTC 297 (343)
T ss_pred eEEEcccccEEEee-ecCCce
Confidence 99999999999976 555443
No 26
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.30 E-value=2e-11 Score=89.77 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=94.8
Q ss_pred CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce-eeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 17 QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR-LKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 17 ~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
...+...+.++.+ .++.+-|.|.+.+|++|..+|.|.+||+.++.. +.....|...|+.|+++++..++++++.
T Consensus 136 s~ep~~kI~t~~s-----kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 136 SEEPYLKIPTPDS-----KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred ccCceEEecCCcc-----ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc
Confidence 3455777777888 999999999999999999999999999999744 5566789999999999999999999999
Q ss_pred ccccccccccCCCCCcceEEEEcCCcccccc
Q 041215 96 YDWSKGAENHNPATAKTYIYLHLPQETEVKG 126 (136)
Q Consensus 96 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (136)
|..++++++...+..+.+...+||+.+...|
T Consensus 211 Dttakl~D~~tl~v~Kty~te~PvN~aaisP 241 (327)
T KOG0643|consen 211 DTTAKLVDVRTLEVLKTYTTERPVNTAAISP 241 (327)
T ss_pred CccceeeeccceeeEEEeeecccccceeccc
Confidence 9999999999999899999999999998887
No 27
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=8.2e-12 Score=101.85 Aligned_cols=101 Identities=20% Similarity=0.335 Sum_probs=88.3
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC-cceeeecccCCCce
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPI 78 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v 78 (136)
.||.||+|.+ ||.+..+...++.+... .|..+.|+|.. ..++++.+.|.+.+||++. ..+...+.+|.++|
T Consensus 151 SGSQDg~vK~--~DlR~~~S~~t~~~nSE-----SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 151 SGSQDGTVKC--WDLRSKKSKSTFRSNSE-----SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV 223 (839)
T ss_pred ecCCCceEEE--Eeeecccccccccccch-----hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence 4899999988 78788888888888878 89999999876 7899999999999999986 46678889999999
Q ss_pred eEEEEccCCCEEEEEEcccccccccccCCC
Q 041215 79 PCSTFNTDGSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
.|+.|+|++.+||||+-|-..+.-+|+.+.
T Consensus 224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 224 LCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred EEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 999999999999999998888777777555
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=7.1e-12 Score=100.57 Aligned_cols=92 Identities=17% Similarity=0.256 Sum_probs=84.2
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC--CEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH--HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
.||.|++|.+|.+ ....+.++|.+|.. .|+|++|-+-| .+|++|++|..+++||+++..|++++.+|...|
T Consensus 158 S~sLDrTVKVWsl--gs~~~nfTl~gHek-----GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 158 SASLDRTVKVWSL--GSPHPNFTLEGHEK-----GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV 230 (794)
T ss_pred eeeccccEEEEEc--CCCCCceeeecccc-----CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence 3789999999555 77889999999999 99999997766 699999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEEccccc
Q 041215 79 PCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~~ 99 (136)
..+.|+|.=.++++|+.|+..
T Consensus 231 s~v~fhp~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 231 SFVFFHPELPIIISGSEDGTV 251 (794)
T ss_pred eEEEecCCCcEEEEecCCccE
Confidence 999999999999999988843
No 29
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=1.9e-11 Score=99.95 Aligned_cols=116 Identities=16% Similarity=0.305 Sum_probs=89.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+|+|.+|++ |++.....+..|. |.. =|+|++|+|.. +++++|+-|+.|+||++...+++..... ..-|++
T Consensus 386 SSMDKTVRL--Wh~~~~~CL~~F~-Hnd-----fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITA 456 (712)
T KOG0283|consen 386 SSMDKTVRL--WHPGRKECLKVFS-HND-----FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITA 456 (712)
T ss_pred ccccccEEe--ecCCCcceeeEEe-cCC-----eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhhee
Confidence 689999999 6667778888876 777 99999999988 8999999999999999998877666644 489999
Q ss_pred EEEccCCCEEEEEEcccccccccccCCCCCcceEEEEcCCcccccccCCCCCCCC
Q 041215 81 STFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRAGTSGR 135 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (136)
|+|.|+|+..+.|+-++.=.-+.. .. +.++++.++.-+++|+..|+
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t--~~-------lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDT--EG-------LKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEc--cC-------CeEEEeeeEeeccCccccCc
Confidence 999999999998877665422211 11 44555556655666555554
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.29 E-value=1.8e-11 Score=99.43 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=86.4
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.||.|.+..||.+ .......+|.+|+. .|+++.|+|..+.++++|.|.+|+||.+.+..++.+|.+|.+.|..
T Consensus 480 T~SqDktaKiW~l--e~~~l~~vLsGH~R-----Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlr 552 (775)
T KOG0319|consen 480 TGSQDKTAKIWDL--EQLRLLGVLSGHTR-----GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLR 552 (775)
T ss_pred ecccccceeeecc--cCceEEEEeeCCcc-----ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEe
Confidence 3799999999555 57788999999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEcccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~ 100 (136)
++|-.++..|++|+.|+-.+
T Consensus 553 a~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred eeeeeCCcEEEeccCCCcEE
Confidence 99999999999999988554
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.28 E-value=1.3e-11 Score=93.85 Aligned_cols=91 Identities=14% Similarity=0.282 Sum_probs=85.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.|.++++ ||.++..+.+++.+|++ +|..+.+.|-..-+++|+-|++|++||+..++...++..|...|.++
T Consensus 253 ~grDst~Rv--WDiRtr~~V~~l~GH~~-----~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral 325 (460)
T KOG0285|consen 253 GGRDSTIRV--WDIRTRASVHVLSGHTN-----PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRAL 325 (460)
T ss_pred cCCcceEEE--eeecccceEEEecCCCC-----cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEE
Confidence 788999999 88899999999999999 99999999888889999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccc
Q 041215 82 TFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~ 99 (136)
+.+|....||+++.|++.
T Consensus 326 ~lhP~e~~fASas~dnik 343 (460)
T KOG0285|consen 326 CLHPKENLFASASPDNIK 343 (460)
T ss_pred ecCCchhhhhccCCccce
Confidence 999999999999998864
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.28 E-value=3.6e-11 Score=94.84 Aligned_cols=92 Identities=23% Similarity=0.336 Sum_probs=82.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc---cCCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS---RCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~h~~~v 78 (136)
||.|.++.+ |+-..-+-..++..|.. -|.|++|+|||.++++++.||.+.+||-.+++.+.++. +|.+.|
T Consensus 166 ~sdDn~v~f--feGPPFKFk~s~r~Hsk-----FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI 238 (603)
T KOG0318|consen 166 GSDDNTVAF--FEGPPFKFKSSFREHSK-----FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI 238 (603)
T ss_pred ccCCCeEEE--eeCCCeeeeeccccccc-----ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence 677888877 87777777788888888 99999999999999999999999999999999999987 799999
Q ss_pred eEEEEccCCCEEEEEEcccccc
Q 041215 79 PCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
..++|+||+..++|++.|-..+
T Consensus 239 falsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 239 FALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred EEEEECCCCceEEEecCCceEE
Confidence 9999999999999988766443
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=6.2e-11 Score=90.01 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=77.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC---------------CEEEEEcCCCcEEEEeCCCcc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH---------------HTFATAGSDGAFNFWDKDSKQ 66 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~---------------~~l~s~~~dg~v~vwd~~~~~ 66 (136)
+|.|-++++|.+ .+......+..|.- +|.|++|-|.. +++++++.|++|++||+.+++
T Consensus 253 ~s~dqtl~vW~~--~t~~~k~~lR~hEh-----~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 253 CSNDQTLRVWVV--ATKQCKAELREHEH-----PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred cCCCceEEEEEe--ccchhhhhhhcccc-----ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 677888888666 55666777788888 99999997653 379999999999999999999
Q ss_pred eeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 67 RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 67 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
++.++.+|..+|..++|+|.|++++++..|-
T Consensus 326 cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 326 CLFTLVGHDNWVRGVAFSPGGKYILSCADDK 356 (406)
T ss_pred EEEEEecccceeeeeEEcCCCeEEEEEecCC
Confidence 9999999999999999999999999887655
No 34
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.23 E-value=9.3e-11 Score=90.82 Aligned_cols=91 Identities=22% Similarity=0.279 Sum_probs=76.6
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
+|.||.... .|.+++..+.......+ ...+++..|||||..|.+|..|+.|++||+.+...+..|.+|.++|..|
T Consensus 321 As~d~~w~F--sd~~~g~~lt~vs~~~s---~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 321 ASNDGTWAF--SDISSGSQLTVVSDETS---DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAI 395 (506)
T ss_pred ecCCceEEE--EEccCCcEEEEEeeccc---cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEE
Confidence 567777765 66677777666543212 1157899999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccc
Q 041215 82 TFNTDGSIFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd 97 (136)
+|+.+|.++++++.|+
T Consensus 396 ~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 396 SFSENGYWLATAADDG 411 (506)
T ss_pred EeccCceEEEEEecCC
Confidence 9999999999998888
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.23 E-value=8.5e-11 Score=95.99 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=78.2
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEE
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCST 82 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~ 82 (136)
+.=|.+.+|.|.. ..-....++|-. .+++++++|||+++++|+.||.|++||..++-|..+|..|.+.|+.++
T Consensus 327 ~klgQLlVweWqs--EsYVlKQQgH~~-----~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~ 399 (893)
T KOG0291|consen 327 SKLGQLLVWEWQS--ESYVLKQQGHSD-----RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQ 399 (893)
T ss_pred CccceEEEEEeec--cceeeecccccc-----ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEE
Confidence 3346778877733 333444467888 999999999999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEEccccccc
Q 041215 83 FNTDGSIFAYSVCYDWSKG 101 (136)
Q Consensus 83 ~sp~~~~l~s~~~dd~~~~ 101 (136)
|+..++.+++++-|+.-+.
T Consensus 400 f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 400 FTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred EEecCCEEEEeecCCeEEe
Confidence 9999999999988885443
No 36
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.8e-11 Score=87.76 Aligned_cols=100 Identities=19% Similarity=0.326 Sum_probs=87.0
Q ss_pred CceeceEEEEEeeC-CCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDD-SQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~-~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
++-||+++| ||. ....++..|+.|.. .|-++.|++-- ..+++++.|++|++|+......+.++.+|...|.
T Consensus 79 a~GDGSLrl--~d~~~~s~Pi~~~kEH~~-----EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 79 ASGDGSLRL--FDLTMPSKPIHKFKEHKR-----EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred EecCceEEE--eccCCCCcchhHHHhhhh-----heEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 567899988 664 35678899999999 99999998776 5677789999999999999999999999999999
Q ss_pred EEEEccC-CCEEEEEEcccccccccccCCC
Q 041215 80 CSTFNTD-GSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 80 ~v~~sp~-~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
...|+|. +.+++++++|.+.+..+...|-
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g 181 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPG 181 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCC
Confidence 9999996 5699999999999988877664
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.21 E-value=1.1e-10 Score=92.18 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=82.2
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee-eecccCCCcee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL-KAMSRCGQPIP 79 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~h~~~v~ 79 (136)
||..||.+.++.+..........+..|++ +|++++|+|++.+|+++...+.+-+||+.+++.. ..+.-|.+.|+
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a-----~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~ 534 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRA-----AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN 534 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccC-----CceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence 57889999886665544455556667899 9999999999999999999999999999987663 33445999999
Q ss_pred EEEEccCCCEEEEEEcccccccccccCCC
Q 041215 80 CSTFNTDGSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
||+|+|+..++|||+-|.-.-...+.-|.
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChh
Confidence 99999999999999887754334444444
No 38
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.21 E-value=1.3e-10 Score=86.63 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=73.2
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.||+||+|++|.+.............|.+ +|.+++|+-+|..+++++.|+.+++||+.+++ +.++-.|.++|.+
T Consensus 45 A~SWD~tVR~wevq~~g~~~~ka~~~~~~-----PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt 118 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVPKAQQSHDG-----PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKT 118 (347)
T ss_pred ecccCCceEEEEEecCCcccchhhhccCC-----CeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeE
Confidence 47999999997765542333355567888 99999999999999999999999999999985 5677799999999
Q ss_pred EEEccCCC--EEEEEEccc
Q 041215 81 STFNTDGS--IFAYSVCYD 97 (136)
Q Consensus 81 v~~sp~~~--~l~s~~~dd 97 (136)
+.|-+... .|+|| ++|
T Consensus 119 ~~wv~~~~~~cl~TG-SWD 136 (347)
T KOG0647|consen 119 CHWVPGMNYQCLVTG-SWD 136 (347)
T ss_pred EEEecCCCcceeEec-ccc
Confidence 99987665 67765 444
No 39
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.21 E-value=9.6e-11 Score=90.58 Aligned_cols=90 Identities=18% Similarity=0.323 Sum_probs=75.2
Q ss_pred CceeceEEEEEeeCC--CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC-cceeeecccCCCc
Q 041215 2 GSIEGRVGVHHLDDS--QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~--~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~ 77 (136)
++.|+.+.| ||.+ +.++.....+|.+ .|+|++|+|.+ ..|++++.|++|.+||+++ ...++.+.+|.+.
T Consensus 246 v~dd~~L~i--wD~R~~~~~~~~~~~ah~~-----~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de 318 (422)
T KOG0264|consen 246 VGDDGKLMI--WDTRSNTSKPSHSVKAHSA-----EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE 318 (422)
T ss_pred ecCCCeEEE--EEcCCCCCCCcccccccCC-----ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence 355777776 8888 5677778889999 99999999988 6899999999999999987 4568999999999
Q ss_pred eeEEEEccCCC-EEEEEEcccc
Q 041215 78 IPCSTFNTDGS-IFAYSVCYDW 98 (136)
Q Consensus 78 v~~v~~sp~~~-~l~s~~~dd~ 98 (136)
|.+|.|+|+.. .||+++.|..
T Consensus 319 v~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred eEEEEeCCCCCceeEecccCCc
Confidence 99999999865 6666665553
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=6.8e-11 Score=85.79 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=84.6
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
+..|.++++ |++..+..++++.+|.. .|..++.+.|...+++|+.|..+.+||+.+|+.+..+.+|.++|+.|
T Consensus 35 cGsdrtvrL--WNp~rg~liktYsghG~-----EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV 107 (307)
T KOG0316|consen 35 CGSDRTVRL--WNPLRGALIKTYSGHGH-----EVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV 107 (307)
T ss_pred cCCCceEEe--ecccccceeeeecCCCc-----eeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence 345888887 88899999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEcccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~~ 102 (136)
+|+.+...+++|+-|.-....
T Consensus 108 ~fNeesSVv~SgsfD~s~r~w 128 (307)
T KOG0316|consen 108 RFNEESSVVASGSFDSSVRLW 128 (307)
T ss_pred EecCcceEEEeccccceeEEE
Confidence 999999999998776644333
No 41
>PTZ00420 coronin; Provisional
Probab=99.19 E-value=2.8e-10 Score=92.61 Aligned_cols=92 Identities=15% Similarity=0.258 Sum_probs=72.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC-CCEEEEEcCCCcEEEEeCCCcc--------eeeecc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI-HHTFATAGSDGAFNFWDKDSKQ--------RLKAMS 72 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~-~~~l~s~~~dg~v~vwd~~~~~--------~~~~~~ 72 (136)
|+.+|.+.+ |+.........+.+|.+ +|.+++|+|+ +.+|++++.|+.|++||+.++. .+..+.
T Consensus 50 GG~~gvI~L--~~~~r~~~v~~L~gH~~-----~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 50 GGLIGAIRL--ENQMRKPPVIKLKGHTS-----SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CCceeEEEe--eecCCCceEEEEcCCCC-----CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence 456677776 55555567788899999 9999999997 6899999999999999997532 234677
Q ss_pred cCCCceeEEEEccCCCEE-EEEEcccccc
Q 041215 73 RCGQPIPCSTFNTDGSIF-AYSVCYDWSK 100 (136)
Q Consensus 73 ~h~~~v~~v~~sp~~~~l-~s~~~dd~~~ 100 (136)
+|...|.+++|+|++..+ ++++.|...+
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 899999999999998765 5666665443
No 42
>PTZ00421 coronin; Provisional
Probab=99.19 E-value=2.4e-10 Score=91.85 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=74.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc-eeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP-IPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~-v~~ 80 (136)
|+.||+|.| ||..++.....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+.++.+|.+. +..
T Consensus 144 gs~DgtVrI--WDl~tg~~~~~l~~h~~-----~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 144 AGADMVVNV--WDVERGKAVEVIKCHSD-----QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred EeCCCEEEE--EECCCCeEEEEEcCCCC-----ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 678999988 77788888888888998 9999999999999999999999999999999888888888654 457
Q ss_pred EEEccCCCEEEEEE
Q 041215 81 STFNTDGSIFAYSV 94 (136)
Q Consensus 81 v~~sp~~~~l~s~~ 94 (136)
+.|.+++..+++++
T Consensus 217 ~~w~~~~~~ivt~G 230 (493)
T PTZ00421 217 CLWAKRKDLIITLG 230 (493)
T ss_pred EEEcCCCCeEEEEe
Confidence 88999887777654
No 43
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=1.6e-10 Score=86.59 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=82.0
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC--EEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH--TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
.||.|.+|.| ||.+...++..+-.|.+ .|+++.|.+... .|.+|+.||.|.+|+.....++.++.+|.+.|
T Consensus 58 SGssDetI~I--YDm~k~~qlg~ll~Hag-----sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V 130 (362)
T KOG0294|consen 58 SGSSDETIHI--YDMRKRKQLGILLSHAG-----SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV 130 (362)
T ss_pred ccCCCCcEEE--Eeccchhhhcceecccc-----ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence 4788999988 99999999999999999 999999987664 89999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEEcccc
Q 041215 79 PCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~ 98 (136)
+.++++|.+++.++-++|..
T Consensus 131 t~lsiHPS~KLALsVg~D~~ 150 (362)
T KOG0294|consen 131 TDLSIHPSGKLALSVGGDQV 150 (362)
T ss_pred ceeEecCCCceEEEEcCCce
Confidence 99999999998887666653
No 44
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.18 E-value=2.2e-10 Score=89.39 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=79.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
++.|++|++ ||+..+.++++|..|+. +|-+++|+|+|+++++|+.||.|.+|+..+++.++.+.+. +.|..+
T Consensus 428 as~dstV~l--wdv~~gv~i~~f~kH~~-----pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel 499 (524)
T KOG0273|consen 428 ASFDSTVKL--WDVESGVPIHTLMKHQE-----PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFEL 499 (524)
T ss_pred eecCCeEEE--EEccCCceeEeeccCCC-----ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEE
Confidence 467889988 89999999999999999 9999999999999999999999999999999998888554 669999
Q ss_pred EEccCCCEEEEEEccc
Q 041215 82 TFNTDGSIFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd 97 (136)
+|+..|..+..+.+|.
T Consensus 500 ~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 500 CWNAAGDKLGACASDG 515 (524)
T ss_pred EEcCCCCEEEEEecCC
Confidence 9999999888776554
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.17 E-value=4e-10 Score=95.00 Aligned_cols=94 Identities=19% Similarity=0.296 Sum_probs=79.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
|+.||+|.+ ||..+++....+.+|.. .|.+++|+| ++.+|++++.|+.|++||+.++..+..+..+ ..|.+
T Consensus 551 ~~~Dg~v~l--Wd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 551 SNFEGVVQV--WDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EeCCCeEEE--EECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 567899988 77788888888999999 999999997 6789999999999999999998888877654 68999
Q ss_pred EEEc-cCCCEEEEEEccccccccc
Q 041215 81 STFN-TDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 81 v~~s-p~~~~l~s~~~dd~~~~~~ 103 (136)
+.|+ +++.++++|+.|......+
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD 646 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYD 646 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEE
Confidence 9995 5789999998877554433
No 46
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.17 E-value=1.4e-10 Score=89.70 Aligned_cols=102 Identities=22% Similarity=0.378 Sum_probs=82.5
Q ss_pred CceeceEEEEEeeCCC-----CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC--cceeeeccc
Q 041215 2 GSIEGRVGVHHLDDSQ-----QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS--KQRLKAMSR 73 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~-----~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~--~~~~~~~~~ 73 (136)
|+.|+.|++|...... -.+...+.+|.. .|..++||+.. .+|.+++.|+.+.|||+++ .+..+...+
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~-----~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHED-----VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCc-----ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 6889999995554432 234577889999 99999999988 7899999999999999994 455567778
Q ss_pred CCCceeEEEEccCC-CEEEEEEcccccccccccCCC
Q 041215 74 CGQPIPCSTFNTDG-SIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 74 h~~~v~~v~~sp~~-~~l~s~~~dd~~~~~~~~~~~ 108 (136)
|.++|+|++|+|.+ .+||||+.|....+++.+...
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN 306 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc
Confidence 99999999999954 578888888887777776555
No 47
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.17 E-value=2.9e-10 Score=92.97 Aligned_cols=89 Identities=24% Similarity=0.435 Sum_probs=74.1
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee------------
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL------------ 68 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~------------ 68 (136)
.|+.||.|.+ ||..++-...+|..|.+ .|+.+.|+..++.+++.+.||+|+.||+....+.
T Consensus 367 TG~eDgKVKv--Wn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfs 439 (893)
T KOG0291|consen 367 TGAEDGKVKV--WNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFS 439 (893)
T ss_pred eccCCCcEEE--EeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeee
Confidence 3788999988 88899999999999999 9999999999999999999999999976543332
Q ss_pred --------------------------------eecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 69 --------------------------------KAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 69 --------------------------------~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
-.+.+|.+||.+++|+|++..|+++ ++|
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~-SWD 499 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASG-SWD 499 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEec-ccc
Confidence 3333899999999999999999976 444
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.17 E-value=3.3e-10 Score=80.98 Aligned_cols=90 Identities=22% Similarity=0.334 Sum_probs=78.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
++.||.+.+ ||.+.++....+..|.. .+.++.|+|++.++++++.++.|.+|++.++..+..+..|...+.++
T Consensus 195 ~~~~~~i~i--~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 267 (289)
T cd00200 195 SSSDGTIKL--WDLSTGKCLGTLRGHEN-----GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267 (289)
T ss_pred ecCCCcEEE--EECCCCceecchhhcCC-----ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEE
Confidence 455888877 77777788888878888 99999999998899988889999999999888888888999999999
Q ss_pred EEccCCCEEEEEEcccc
Q 041215 82 TFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~ 98 (136)
+|++++.++++++.+..
T Consensus 268 ~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 268 AWSPDGKRLASGSADGT 284 (289)
T ss_pred EECCCCCEEEEecCCCe
Confidence 99999999998876653
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=3.3e-10 Score=83.41 Aligned_cols=90 Identities=16% Similarity=0.289 Sum_probs=71.6
Q ss_pred CceeceEEEEEeeC-CCCcceeEE-EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc--ceeeecccCCCc
Q 041215 2 GSIEGRVGVHHLDD-SQQSKNFTF-KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK--QRLKAMSRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~-~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~h~~~ 77 (136)
|+.|..|+||.... .+-.....+ .+|+. .|..++|+|.|++|++++.|.++-||.-..+ +++..+.+|...
T Consensus 33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkr-----sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE 107 (312)
T KOG0645|consen 33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKR-----SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE 107 (312)
T ss_pred ecCCceEEEEecCCCCcEEEEEeccccchh-----eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc
Confidence 56788888855431 222222233 24777 9999999999999999999999999986643 678899999999
Q ss_pred eeEEEEccCCCEEEEEEcc
Q 041215 78 IPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~d 96 (136)
|.|++|+++|.+||+++-|
T Consensus 108 VK~Vaws~sG~~LATCSRD 126 (312)
T KOG0645|consen 108 VKCVAWSASGNYLATCSRD 126 (312)
T ss_pred eeEEEEcCCCCEEEEeeCC
Confidence 9999999999999999764
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=3.9e-10 Score=83.02 Aligned_cols=95 Identities=14% Similarity=0.200 Sum_probs=81.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC---cceeeecccCCCc
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS---KQRLKAMSRCGQP 77 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~h~~~ 77 (136)
+||-|.++.||.=....-+...++.+|.+ .|.|++|+++|.+|+++++|..|=+|.+.. -+++..+..|...
T Consensus 78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEn-----EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGEFECVATLEGHEN-----EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EeeccceEEEeecCCCceeEEeeeecccc-----ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 47889999885544456678899999999 999999999999999999999999999874 3567888999999
Q ss_pred eeEEEEccCCCEEEEEEcccccc
Q 041215 78 IPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
|..+.|+|...+|++++-|+..+
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEE
Confidence 99999999999999987766443
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.16 E-value=3.1e-11 Score=92.78 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=80.5
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+||.|..|.+ ||++++..+.++..|+. .|..+.|+|++++|+++|.|..++++|+.+...++++.+|...|.+
T Consensus 239 sgskDnlVKl--WDprSg~cl~tlh~HKn-----tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 239 SGSKDNLVKL--WDPRSGSCLATLHGHKN-----TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred EccCCceeEe--ecCCCcchhhhhhhccc-----eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 4778886655 99999999999999999 9999999999999999999999999999988889999999999999
Q ss_pred EEEccCCCEEEEEEcccc
Q 041215 81 STFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~ 98 (136)
+.|+|-..-+++.++.|.
T Consensus 312 ~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDG 329 (464)
T ss_pred eccccccccceeeccCCC
Confidence 999997765555555553
No 52
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.15 E-value=1.4e-10 Score=94.34 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=83.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
+|.|.+|.||. ..+...+.+|.+|+. .|..+.|-.++..|++++.||.+++|++.+..|+.++..|.+.|..+
T Consensus 523 ~SgD~TvKIW~--is~fSClkT~eGH~~-----aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 523 CSGDKTVKIWS--ISTFSCLKTFEGHTS-----AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWAL 595 (775)
T ss_pred ccCCceEEEEE--eccceeeeeecCccc-----eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEE
Confidence 67899998854 477899999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccc
Q 041215 82 TFNTDGSIFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd 97 (136)
+-++...+++||++|.
T Consensus 596 ~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 596 SVSPLLDMFVTGGGDG 611 (775)
T ss_pred eecCccceeEecCCCe
Confidence 9999999999988876
No 53
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=87.10 Aligned_cols=87 Identities=18% Similarity=0.251 Sum_probs=73.6
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
||..||.+.||.| .+..+..+|.+|-. +|.+++|+++|++|++++.|..|.+||+..|.+++++ ...++|..
T Consensus 40 vGc~nG~vvI~D~--~T~~iar~lsaH~~-----pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-rf~spv~~ 111 (405)
T KOG1273|consen 40 VGCANGRVVIYDF--DTFRIARMLSAHVR-----PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-RFDSPVWG 111 (405)
T ss_pred eeccCCcEEEEEc--cccchhhhhhcccc-----ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-EccCccce
Confidence 5788999999555 55568888999999 9999999999999999999999999999999988887 45589999
Q ss_pred EEEccCCCEEEEEEc
Q 041215 81 STFNTDGSIFAYSVC 95 (136)
Q Consensus 81 v~~sp~~~~l~s~~~ 95 (136)
+.|+|..+..+.++-
T Consensus 112 ~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 112 AQWHPRKRNKCVATI 126 (405)
T ss_pred eeeccccCCeEEEEE
Confidence 999997665444443
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.6e-10 Score=83.44 Aligned_cols=97 Identities=21% Similarity=0.405 Sum_probs=82.8
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC-cceeeecccCCCce
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPI 78 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v 78 (136)
++|+||+|.+ |+...+..+.+|.+|.. -|-...|+|.. +++++++.|+.+++||++. |..+. +..|...+
T Consensus 122 tsSWD~TiKL--W~~~r~~Sv~Tf~gh~~-----~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Ei 193 (311)
T KOG0277|consen 122 TSSWDGTIKL--WDPNRPNSVQTFNGHNS-----CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEI 193 (311)
T ss_pred eeccCCceEe--ecCCCCcceEeecCCcc-----EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEecccee
Confidence 3689999988 88888899999999999 99999999988 7999999999999999875 44444 88999999
Q ss_pred eEEEEcc-CCCEEEEEEccccccccccc
Q 041215 79 PCSTFNT-DGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 79 ~~v~~sp-~~~~l~s~~~dd~~~~~~~~ 105 (136)
.|+.|+. +..+++||+.|...++.+.+
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehh
Confidence 9999997 56689998888877665554
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.1e-11 Score=98.37 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=80.5
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN 84 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 84 (136)
.|.|.+ ||-+.+..+..|..|++ +|..++|||.+.++++|++|-.|++|++.+..++.++.+|.+-|+.+.|+
T Consensus 30 sG~IQl--WDYRM~tli~rFdeHdG-----pVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FH 102 (1202)
T KOG0292|consen 30 SGVIQL--WDYRMGTLIDRFDEHDG-----PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFH 102 (1202)
T ss_pred Cceeee--ehhhhhhHHhhhhccCC-----ccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeecc
Confidence 466666 67788999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEccccc
Q 041215 85 TDGSIFAYSVCYDWS 99 (136)
Q Consensus 85 p~~~~l~s~~~dd~~ 99 (136)
+.-.++++|++|-..
T Consensus 103 heyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 103 HEYPWILSASDDQTI 117 (1202)
T ss_pred CCCceEEEccCCCeE
Confidence 999999988776533
No 56
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.7e-10 Score=82.93 Aligned_cols=92 Identities=13% Similarity=0.232 Sum_probs=76.0
Q ss_pred CceeceEEEEEeeCCCC---cceeEEEeeeCCCCccceeEEEE-eCC-CCEEEEEcCCCcEEEEeCCCcc--eeeecccC
Q 041215 2 GSIEGRVGVHHLDDSQQ---SKNFTFKCHRDGSEIYSVNSLNF-HPI-HHTFATAGSDGAFNFWDKDSKQ--RLKAMSRC 74 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~---~~~~~l~~h~~~~~~~~v~~l~~-~p~-~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h 74 (136)
+|.|++|+| |+.+++ ..+.+|.+|.+ ||..++| ||. |.+|++++.||.|.||..+++. ..+++..|
T Consensus 29 csSD~tVkI--f~v~~n~~s~ll~~L~Gh~G-----PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h 101 (299)
T KOG1332|consen 29 CSSDGTVKI--FEVRNNGQSKLLAELTGHSG-----PVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH 101 (299)
T ss_pred ecCCccEEE--EEEcCCCCceeeeEecCCCC-----CeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence 688999999 776543 56788999999 9999999 564 5899999999999999998873 34667789
Q ss_pred CCceeEEEEccCC--CEEEEEEcccccc
Q 041215 75 GQPIPCSTFNTDG--SIFAYSVCYDWSK 100 (136)
Q Consensus 75 ~~~v~~v~~sp~~--~~l~s~~~dd~~~ 100 (136)
.+.|++|+|.|++ -+|++|++|+-..
T Consensus 102 ~~SVNsV~wapheygl~LacasSDG~vs 129 (299)
T KOG1332|consen 102 SASVNSVAWAPHEYGLLLACASSDGKVS 129 (299)
T ss_pred cccceeecccccccceEEEEeeCCCcEE
Confidence 9999999999975 5788888877443
No 57
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.14 E-value=1.2e-09 Score=81.82 Aligned_cols=86 Identities=20% Similarity=0.312 Sum_probs=70.2
Q ss_pred eceEEEEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc-EEEEeCCCcceeeecccC--CCcee
Q 041215 5 EGRVGVHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA-FNFWDKDSKQRLKAMSRC--GQPIP 79 (136)
Q Consensus 5 dG~v~i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~h--~~~v~ 79 (136)
-|.|.| .|....+ ....+..|++ .|.|++++.+|.+++++|..|+ |+|||..+|..+++++.. ...|.
T Consensus 158 ~GqvQi--~dL~~~~~~~p~~I~AH~s-----~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 158 TGQVQI--VDLASTKPNAPSIINAHDS-----DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred cceEEE--EEhhhcCcCCceEEEcccC-----ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 366666 4433222 3467789999 9999999999999999999997 899999999999999764 47899
Q ss_pred EEEEccCCCEEEEEEccc
Q 041215 80 CSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd 97 (136)
||+|||+..+||.++.-+
T Consensus 231 ~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred EEEeCCCccEEEEEcCCC
Confidence 999999999999765433
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.13 E-value=1.5e-09 Score=77.50 Aligned_cols=91 Identities=20% Similarity=0.273 Sum_probs=77.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
++.||.+.+ ||...++....+..|.. .+.++.|+|++.++++++.++.|.+||+.++.....+..|...+.++
T Consensus 69 ~~~~~~i~i--~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 69 GSSDKTIRL--WDLETGECVRTLTGHTS-----YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EcCCCeEEE--EEcCcccceEEEeccCC-----cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 566888877 66677677888888888 99999999998899999889999999999888888888899999999
Q ss_pred EEccCCCEEEEEEccccc
Q 041215 82 TFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~ 99 (136)
+|+|++.++++++.+...
T Consensus 142 ~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 142 AFSPDGTFVASSSQDGTI 159 (289)
T ss_pred EEcCcCCEEEEEcCCCcE
Confidence 999998888877645543
No 59
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=6.7e-10 Score=89.45 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=82.5
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCcee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIP 79 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~ 79 (136)
+||.|..|++ |+-.+.....+|..|.. =|.+++.||...++.++++|-.|++||.+.. .+.++|.+|..-|.
T Consensus 72 ~GsDD~~IrV--fnynt~ekV~~FeAH~D-----yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM 144 (794)
T KOG0276|consen 72 TGSDDMQIRV--FNYNTGEKVKTFEAHSD-----YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM 144 (794)
T ss_pred EecCCceEEE--EecccceeeEEeecccc-----ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence 5899999999 55588899999999999 9999999999999999999999999999875 66789999999999
Q ss_pred EEEEccC-CCEEEEEEccccc
Q 041215 80 CSTFNTD-GSIFAYSVCYDWS 99 (136)
Q Consensus 80 ~v~~sp~-~~~l~s~~~dd~~ 99 (136)
+|+|+|. ...+|+|+-|...
T Consensus 145 qv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred EEEecCCCccceeeeeccccE
Confidence 9999995 5689999888743
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.12 E-value=1.2e-10 Score=90.95 Aligned_cols=91 Identities=24% Similarity=0.371 Sum_probs=77.7
Q ss_pred CCceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 1 VGSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
.|++|+.|.||. .. .+..+.+|.+|.. +|..++|+++|..+.+++.|+.|++||+++|.++..+. ....+.
T Consensus 232 S~gmD~~vklW~--vy~~~~~lrtf~gH~k-----~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~ 303 (503)
T KOG0282|consen 232 SGGMDGLVKLWN--VYDDRRCLRTFKGHRK-----PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPT 303 (503)
T ss_pred ecCCCceEEEEE--EecCcceehhhhcchh-----hhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCce
Confidence 478999998855 33 4789999999999 99999999999999999999999999999999988884 346889
Q ss_pred EEEEccCC-CEEEEEEccccc
Q 041215 80 CSTFNTDG-SIFAYSVCYDWS 99 (136)
Q Consensus 80 ~v~~sp~~-~~l~s~~~dd~~ 99 (136)
|+.|+|++ ..+++|..|.=.
T Consensus 304 cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred eeecCCCCCcEEEEecCCCcE
Confidence 99999998 677777666533
No 61
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.10 E-value=1.4e-09 Score=82.87 Aligned_cols=86 Identities=23% Similarity=0.314 Sum_probs=75.5
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc-EEEEeCCCcceeeecccCC--CceeEE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA-FNFWDKDSKQRLKAMSRCG--QPIPCS 81 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~h~--~~v~~v 81 (136)
.|.|.+ ||..+-++...+.+|++ ++-+++|+++|.+|++++.-|+ |++|.+.+|+.+.+|+... ..|.++
T Consensus 152 ~GdV~l--~d~~nl~~v~~I~aH~~-----~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL 224 (391)
T KOG2110|consen 152 SGDVVL--FDTINLQPVNTINAHKG-----PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL 224 (391)
T ss_pred CceEEE--EEcccceeeeEEEecCC-----ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE
Confidence 466655 99888899999999999 9999999999999999999996 8999999999999997653 567899
Q ss_pred EEccCCCEEEEEEccc
Q 041215 82 TFNTDGSIFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd 97 (136)
+|+|++++|++.+..+
T Consensus 225 ~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 225 SFSPDSQFLAASSNTE 240 (391)
T ss_pred EECCCCCeEEEecCCC
Confidence 9999999988766544
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.10 E-value=4.8e-11 Score=90.05 Aligned_cols=95 Identities=19% Similarity=0.312 Sum_probs=78.6
Q ss_pred CCceeceEEEEEeeCCCCcce--------eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc
Q 041215 1 VGSIEGRVGVHHLDDSQQSKN--------FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~--------~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 72 (136)
.||.||.|-+|.| .+++.. ..|--++. +|.|++|+.|...|++|+.||.|++|.+.+|.|+..|.
T Consensus 230 sgSvDGFiEVWny--~~GKlrKDLkYQAqd~fMMmd~-----aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 230 SGSVDGFIEVWNY--TTGKLRKDLKYQAQDNFMMMDD-----AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred eccccceeeeehh--ccchhhhhhhhhhhcceeeccc-----ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence 4899999999766 444432 23334667 99999999999999999999999999999999999886
Q ss_pred -cCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215 73 -RCGQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 73 -~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
.|...|+|+.|+.|+..+++++-|-....+
T Consensus 303 rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiH 333 (508)
T KOG0275|consen 303 RAHTKGVTCLSFSRDNSQILSASFDQTVRIH 333 (508)
T ss_pred hhhccCeeEEEEccCcchhhcccccceEEEe
Confidence 799999999999999999987666544433
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.09 E-value=8.5e-11 Score=88.75 Aligned_cols=93 Identities=20% Similarity=0.210 Sum_probs=85.3
Q ss_pred CCceeceEEEEEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
.||.||.|.+ |.+.++..+..|. .|.. .|+|++|+.|+..+.+++.|-++++.-+.+|+++.++.+|.+-|+
T Consensus 280 sGsqDGkIKv--Wri~tG~ClRrFdrAHtk-----Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 280 SGSQDGKIKV--WRIETGQCLRRFDRAHTK-----GVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred ccCcCCcEEE--EEEecchHHHHhhhhhcc-----CeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 4899999999 5568889888886 7888 999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEEcccccc
Q 041215 80 CSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~ 100 (136)
.+.|+++|..++++++|...+
T Consensus 353 ~a~ft~dG~~iisaSsDgtvk 373 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVK 373 (508)
T ss_pred ceEEcCCCCeEEEecCCccEE
Confidence 999999999999999988543
No 64
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.08 E-value=1.3e-09 Score=79.68 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=70.9
Q ss_pred CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 18 QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 18 ~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
-.++..|+.|.+ -+..+.|+|++.+|++++.|.+++||+.++. +...++.+|..++..++||-++++|+||++|
T Consensus 205 l~P~~k~~ah~~-----~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 205 LEPVHKFQAHNG-----HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred ceEhhheecccc-----eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC
Confidence 456778899999 9999999999999999999999999999987 5556788999999999999999999999999
Q ss_pred cccccc
Q 041215 97 DWSKGA 102 (136)
Q Consensus 97 d~~~~~ 102 (136)
...+.-
T Consensus 280 ~~~rlW 285 (311)
T KOG0315|consen 280 HTARLW 285 (311)
T ss_pred Cceeec
Confidence 766443
No 65
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.08 E-value=4.6e-10 Score=84.56 Aligned_cols=89 Identities=19% Similarity=0.331 Sum_probs=76.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeec---ccCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAM---SRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~---~~h~~~ 77 (136)
|..=|.|+| +|..+++....+.+|.. .|+.+.++|.. +++++++.|-.|++||+++..++..+ .+|.+.
T Consensus 111 ~G~~GvIrV--id~~~~~~~~~~~ghG~-----sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 111 GGYLGVIRV--IDVVSGQCSKNYRGHGG-----SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred ecceeEEEE--EecchhhhccceeccCc-----cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 334566766 88888888899999999 99999999998 79999999999999999999887665 569999
Q ss_pred eeEEEEccCCCEEEEEEccc
Q 041215 78 IPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd 97 (136)
|.+|.|++++..+++++-|-
T Consensus 184 VLSvD~~~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDH 203 (385)
T ss_pred EEEEEEcCCCCeeeccCCcc
Confidence 99999999999999765543
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.07 E-value=3.7e-10 Score=88.26 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=79.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+|-|+.+.+ ||.++|+.+..|. ... .+.|+.|+|++ +.+++|+.|+.|+.||+++++.++++..|.+.|+.
T Consensus 276 ~sfD~~lKl--wDtETG~~~~~f~-~~~-----~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 276 ASFDRFLKL--WDTETGQVLSRFH-LDK-----VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred eecceeeee--eccccceEEEEEe-cCC-----CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 577888877 9999999998886 344 78999999999 89999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEcccc
Q 041215 81 STFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~ 98 (136)
|.|-++++.+++++.|.-
T Consensus 348 i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKS 365 (503)
T ss_pred eEEccCCceEeeeccCcc
Confidence 999999999998777653
No 67
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.07 E-value=5.6e-10 Score=91.95 Aligned_cols=83 Identities=16% Similarity=0.284 Sum_probs=73.1
Q ss_pred EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC
Q 041215 8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG 87 (136)
Q Consensus 8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 87 (136)
..|..+|..+.+....|.+|.+ .|++++|+|+|++|++++.|++|++||+.++.++-.+ .-..++.++.|+|.|
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~SPng 629 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFSPNG 629 (910)
T ss_pred eeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEECCCC
Confidence 3444588888888899999999 9999999999999999999999999999999887665 445889999999999
Q ss_pred CEEEEEEcc
Q 041215 88 SIFAYSVCY 96 (136)
Q Consensus 88 ~~l~s~~~d 96 (136)
.+|||+..|
T Consensus 630 D~LAT~Hvd 638 (910)
T KOG1539|consen 630 DFLATVHVD 638 (910)
T ss_pred CEEEEEEec
Confidence 999998665
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.06 E-value=7.1e-10 Score=86.01 Aligned_cols=90 Identities=21% Similarity=0.341 Sum_probs=77.9
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-CCcee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-GQPIP 79 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~ 79 (136)
.|+.||.+.| ||.+++.....|.+|.+ +|..++|+.+|.+|+++.+|+.|++||++......++... ...+.
T Consensus 364 tgt~d~~vki--wdlks~~~~a~Fpght~-----~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 364 TGTPDGVVKI--WDLKSQTNVAKFPGHTG-----PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred ccCCCceEEE--EEcCCccccccCCCCCC-----ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 3788999998 77788888889999999 9999999999999999999999999999887766666433 35799
Q ss_pred EEEEccCCCEEEEEEccc
Q 041215 80 CSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd 97 (136)
+++|.+.|.+++.++.+.
T Consensus 437 s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred eEEEcCCCCeEEeeccee
Confidence 999999999999886654
No 69
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.06 E-value=5.3e-10 Score=88.65 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=59.1
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
.|+..+|+|||.+|++.+.||.++|||+.+.+.+..+..--+.+.||+|||||+++++|+.||..
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceE
Confidence 78899999999999999999999999999887777666666889999999999999999999954
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.06 E-value=5.1e-10 Score=88.44 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=74.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc---ceeeecccCCC--
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK---QRLKAMSRCGQ-- 76 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~h~~-- 76 (136)
+|.||+++||..+- ..+++..++.......+-++..|+|++++.++++|..||.|.+|+.... ...+.-.+|..
T Consensus 287 ~s~DgtlRiWdv~~-~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~ 365 (641)
T KOG0772|consen 287 CSYDGTLRIWDVNN-TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ 365 (641)
T ss_pred ecCCCcEEEEecCC-chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC
Confidence 68899999944432 3355555553322233447899999999999999999999999997432 12233345754
Q ss_pred ceeEEEEccCCCEEEEEEccccccccccc
Q 041215 77 PIPCSTFNTDGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~dd~~~~~~~~ 105 (136)
.|+||.||++|++|++-+.|+..+.-+..
T Consensus 366 ~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 366 DITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ceeEEEeccccchhhhccCCCceeeeecc
Confidence 99999999999999999999966544333
No 71
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=7.4e-10 Score=92.11 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=83.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|..|=.|.+|.| +....++++.+|.. =|..+.||+...++.++|+|.+|+||+.+++.++..+.+|..-|.|.
T Consensus 69 GGDDykIkVWnY--k~rrclftL~GHlD-----YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcA 141 (1202)
T KOG0292|consen 69 GGDDYKIKVWNY--KTRRCLFTLLGHLD-----YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCA 141 (1202)
T ss_pred cCCccEEEEEec--ccceehhhhccccc-----eeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEee
Confidence 677888999777 56689999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEcccc
Q 041215 82 TFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~ 98 (136)
+|+|...++++|+-|-.
T Consensus 142 qFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQT 158 (1202)
T ss_pred ccCCccceEEEecccce
Confidence 99999999999877653
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.04 E-value=2.3e-09 Score=90.40 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=78.2
Q ss_pred CCceeceEEEEEeeCCCCc-ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc------ceeeeccc
Q 041215 1 VGSIEGRVGVHHLDDSQQS-KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK------QRLKAMSR 73 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~-~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~------~~~~~~~~ 73 (136)
+|+.||.|.+ ||.+... ....+.+|.. .|.++.|. ++..|++++.|+.|++||+... ..+.++.+
T Consensus 635 tgs~dg~I~i--wD~~~~~~~~~~~~~h~~-----~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 635 FGSADHKVYY--YDLRNPKLPLCTMIGHSK-----TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred EEeCCCeEEE--EECCCCCccceEecCCCC-----CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC
Confidence 3678898887 7776554 5677788998 99999997 6789999999999999998742 45778889
Q ss_pred CCCceeEEEEccCCCEEEEEEccccccccc
Q 041215 74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
|...+.+++|+|++.++++|+.|.......
T Consensus 707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 707 HTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 999999999999999999998877554443
No 73
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=1.8e-10 Score=93.67 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=82.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.|+.+|+|.+ ||....+..++|.||.. .+..+.|||.+.+.+.++.|.-+.+||.....+.+.+.+|...|.+
T Consensus 87 agsasgtiK~--wDleeAk~vrtLtgh~~-----~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 87 AGSASGTIKV--WDLEEAKIVRTLTGHLL-----NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred ccccCCceee--eehhhhhhhhhhhcccc-----CcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence 3788999988 77788899999999999 9999999999999999999999999999977789999999999999
Q ss_pred EEEccCCCEEEEEEccc
Q 041215 81 STFNTDGSIFAYSVCYD 97 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd 97 (136)
++|+|+|++++.++.|.
T Consensus 160 l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 160 LRLSPDGRWVASGGEDN 176 (825)
T ss_pred EeecCCCceeeccCCcc
Confidence 99999999999887754
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=1.1e-09 Score=84.70 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=77.8
Q ss_pred CCceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCce
Q 041215 1 VGSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPI 78 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v 78 (136)
.||.|.+..||..... .-+..+++.+|.. +|..+.|+||.++|++|+.+..+.+||+.+|.....+.. +...+
T Consensus 241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~ 315 (519)
T KOG0293|consen 241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSV 315 (519)
T ss_pred eccCCceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCc
Confidence 3788889888765543 2466788889998 999999999999999999999999999999988776643 46889
Q ss_pred eEEEEccCCCEEEEEEccc
Q 041215 79 PCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd 97 (136)
.+++|.|||..+++|+.|.
T Consensus 316 ~sc~W~pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 316 SSCAWCPDGFRFVTGSPDR 334 (519)
T ss_pred ceeEEccCCceeEecCCCC
Confidence 9999999999999987764
No 75
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.01 E-value=4.7e-10 Score=88.55 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=80.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee-----------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA----------- 70 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~----------- 70 (136)
+..||+|.| ||..+......|++|.. .+.||.++++|..|-+|+.|.+|+.||+..++.+.+
T Consensus 527 ccsdGnI~v--wDLhnq~~VrqfqGhtD-----GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg 599 (705)
T KOG0639|consen 527 CCSDGNIAV--WDLHNQTLVRQFQGHTD-----GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG 599 (705)
T ss_pred eccCCcEEE--EEcccceeeecccCCCC-----CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc
Confidence 346999999 88898999999999999 999999999999999999999999999876543322
Q ss_pred -----------------------------cccCCCceeEEEEccCCCEEEEEEcccccccccccCCC
Q 041215 71 -----------------------------MSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 71 -----------------------------~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
+..|.+.|.++.|++.|+++++.+.|++. ..|.+|-
T Consensus 600 ~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlL--nawrtPy 664 (705)
T KOG0639|consen 600 YCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL--NAWRTPY 664 (705)
T ss_pred cCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhh--hhccCcc
Confidence 11466788899999999999988888876 5565554
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=3.2e-09 Score=85.76 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=83.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.++.+++ ||+++.+.+..+.+|.. .|.++..+.+|..++++++||+|++||+....++.++..|...|.++
T Consensus 189 Ggtek~lr~--wDprt~~kimkLrGHTd-----NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 189 GGTEKDLRL--WDPRTCKKIMKLRGHTD-----NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred cCcccceEE--eccccccceeeeecccc-----ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 677888887 99999999999999999 99999999999999999999999999999999999999999889999
Q ss_pred EEccCCCEEEEEEcccc
Q 041215 82 TFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~ 98 (136)
..+|+-..+.+|+.|.-
T Consensus 262 ~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGN 278 (735)
T ss_pred eeCCCcceEEecCCCCc
Confidence 99999888888877664
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=3.1e-09 Score=83.17 Aligned_cols=88 Identities=25% Similarity=0.316 Sum_probs=75.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc-ceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~ 79 (136)
||.|+.+.+ ||..+......+.+|.. -|.|.+|+|.. +.+++|+.||.|++||+... ..+.++ .|..+|-
T Consensus 129 ~sDd~v~k~--~d~s~a~v~~~l~~htD-----YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe 200 (487)
T KOG0310|consen 129 GSDDKVVKY--WDLSTAYVQAELSGHTD-----YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVE 200 (487)
T ss_pred cCCCceEEE--EEcCCcEEEEEecCCcc-----eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCcee
Confidence 677777766 77777666778889999 99999999876 69999999999999999875 566666 7899999
Q ss_pred EEEEccCCCEEEEEEccc
Q 041215 80 CSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd 97 (136)
.|.+-|.|.++++|++..
T Consensus 201 ~vl~lpsgs~iasAgGn~ 218 (487)
T KOG0310|consen 201 SVLALPSGSLIASAGGNS 218 (487)
T ss_pred eEEEcCCCCEEEEcCCCe
Confidence 999999999999998855
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7.5e-10 Score=88.05 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=75.6
Q ss_pred CCceeceEEEEEeeCCCCcceeE-EEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFT-FKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~-l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
+|+.||.|.. +|.+..+.... +.+|.. .|..+.|++++.+|++|+.|+.+.|||......+..+..|.+.|.
T Consensus 275 sGsr~~~I~~--~dvR~~~~~~~~~~~H~q-----eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 275 SGSRDGKILN--HDVRISQHVVSTLQGHRQ-----EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred EecCCCcEEE--EEEecchhhhhhhhcccc-----eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence 4778888877 77776555444 888999 999999999999999999999999999988888899999999999
Q ss_pred EEEEccCC-CEEEEEEc
Q 041215 80 CSTFNTDG-SIFAYSVC 95 (136)
Q Consensus 80 ~v~~sp~~-~~l~s~~~ 95 (136)
.++|+|-. .+||+|++
T Consensus 348 A~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGG 364 (484)
T ss_pred EeeeCCCccCceEEcCC
Confidence 99999965 57888755
No 79
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.97 E-value=2.4e-09 Score=81.52 Aligned_cols=75 Identities=25% Similarity=0.435 Sum_probs=69.2
Q ss_pred cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215 19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
....+|..|.. .|.+++++|+.+++++|+.|..-++|+..++....++.+|.+.|.|+.|+.+|.+||||.-++-
T Consensus 55 dS~~tF~~H~~-----svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~ 129 (399)
T KOG0296|consen 55 DSLVTFDKHTD-----SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGK 129 (399)
T ss_pred cceeehhhcCC-----ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCcc
Confidence 45678889999 9999999998899999999999999999999999999999999999999999999999865553
No 80
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.97 E-value=8.8e-09 Score=73.49 Aligned_cols=80 Identities=21% Similarity=0.425 Sum_probs=59.9
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeE
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.+..+.+ ||.+ .+.+..+. .. .++.+.|+|+|++|+.++.+ |.|.+||..+...+..+. | ..+..
T Consensus 81 ~~~~v~l--yd~~-~~~i~~~~--~~-----~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~ 148 (194)
T PF08662_consen 81 MPAKVTL--YDVK-GKKIFSFG--TQ-----PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATD 148 (194)
T ss_pred CCcccEE--EcCc-ccEeEeec--CC-----CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEE
Confidence 3444544 6664 44445543 44 77899999999999998754 669999999888877763 3 34789
Q ss_pred EEEccCCCEEEEEEc
Q 041215 81 STFNTDGSIFAYSVC 95 (136)
Q Consensus 81 v~~sp~~~~l~s~~~ 95 (136)
++|+|+|++++++..
T Consensus 149 ~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 149 VEWSPDGRYLATATT 163 (194)
T ss_pred EEEcCCCCEEEEEEe
Confidence 999999999999865
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.97 E-value=1.1e-08 Score=75.43 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=76.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
++.|.+..+|+- -+++.+-++.+|.+ .|+|++..-+...+++|+.|.++++||+++|+++.++ ....+|..+
T Consensus 28 caKD~~~~vw~s--~nGerlGty~GHtG-----avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~-k~~~~Vk~~ 99 (327)
T KOG0643|consen 28 CAKDSTPTVWYS--LNGERLGTYDGHTG-----AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW-KTNSPVKRV 99 (327)
T ss_pred ecCCCCceEEEe--cCCceeeeecCCCc-----eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe-ecCCeeEEE
Confidence 567778887554 57889999999999 9999999999999999999999999999999999888 445899999
Q ss_pred EEccCCCEEEEEEccc
Q 041215 82 TFNTDGSIFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd 97 (136)
.|+.+|.+++.+...-
T Consensus 100 ~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 100 DFSFGGNLILASTDKQ 115 (327)
T ss_pred eeccCCcEEEEEehhh
Confidence 9999999888654433
No 82
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.97 E-value=2.7e-09 Score=78.04 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=89.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc--eeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ--RLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~v~ 79 (136)
+|.|.+|++ |.+.+|....+++-.++ .|+.+.+.|++..|++++. ..|++||+.++. .+.+|.+|...|.
T Consensus 16 A~YDhTIRf--Wqa~tG~C~rTiqh~ds-----qVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 16 AGYDHTIRF--WQALTGICSRTIQHPDS-----QVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ccCcceeee--eehhcCeEEEEEecCcc-----ceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 678999988 77899999999987778 9999999999999988865 569999998753 5889999999999
Q ss_pred EEEEccCCCEEEEEEccccccccccc---------CCCCCcceEEEEcCC
Q 041215 80 CSTFNTDGSIFAYSVCYDWSKGAENH---------NPATAKTYIYLHLPQ 120 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~~~~~~---------~~~~~~~~~~~~~~~ 120 (136)
.|.|..+|++..+|+.|...+.-+.. .+. +...+.+||=|
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s-pVn~vvlhpnQ 136 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS-PVNTVVLHPNQ 136 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhccCCC-CcceEEecCCc
Confidence 99999999999999998865544333 333 44555566544
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.9e-09 Score=78.84 Aligned_cols=83 Identities=19% Similarity=0.373 Sum_probs=70.1
Q ss_pred EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCceeEEEEccCCCE
Q 041215 11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPIPCSTFNTDGSI 89 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~ 89 (136)
+++|+-.|....++..+.. .-+.+ ...+|.|+++++++++.||.|.+|+++++..+..+.+ +.+++.|+.|+|...+
T Consensus 212 ~~lDAf~G~~~~tfs~~~~-~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~m 289 (311)
T KOG1446|consen 212 YLLDAFDGTVKSTFSGYPN-AGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAM 289 (311)
T ss_pred EEEEccCCcEeeeEeeccC-CCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceee
Confidence 3488888888888888765 11112 4678999999999999999999999999999998888 6899999999999999
Q ss_pred EEEEEc
Q 041215 90 FAYSVC 95 (136)
Q Consensus 90 l~s~~~ 95 (136)
++++++
T Consensus 290 f~sa~s 295 (311)
T KOG1446|consen 290 FVSASS 295 (311)
T ss_pred eeecCc
Confidence 998865
No 84
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.96 E-value=1.4e-09 Score=82.76 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=77.5
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.|+.|.+|.| ||..+....+.+.+|.+ .|.|+.|.. +.+++|++|.+|++||+++++++.++-.|...|..
T Consensus 212 SGlrDnTiki--WD~n~~~c~~~L~GHtG-----SVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLh 282 (499)
T KOG0281|consen 212 SGLRDNTIKI--WDKNSLECLKILTGHTG-----SVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLH 282 (499)
T ss_pred cccccCceEE--eccccHHHHHhhhcCCC-----cEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEE
Confidence 4788999988 89899999999999999 999998864 69999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEccccc
Q 041215 81 STFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~ 99 (136)
+.|+ ..++++++.|--.
T Consensus 283 lrf~--ng~mvtcSkDrsi 299 (499)
T KOG0281|consen 283 LRFS--NGYMVTCSKDRSI 299 (499)
T ss_pred EEEe--CCEEEEecCCcee
Confidence 9995 4578877776544
No 85
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.96 E-value=8.5e-09 Score=76.93 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=80.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.|..|-+|... ..-+....+++|.+ +|-.+.|.+++..+++++.|..|+.||+++|+++..+.+|..-|+++
T Consensus 65 gG~Dr~I~LWnv~-gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~ 138 (338)
T KOG0265|consen 65 GGSDRAIVLWNVY-GDCENFWVLKGHSG-----AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL 138 (338)
T ss_pred cCCcceEEEEecc-ccccceeeeccccc-----eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeec
Confidence 5667777775511 23456778889999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCC-EEEEEEccccccccccc
Q 041215 82 TFNTDGS-IFAYSVCYDWSKGAENH 105 (136)
Q Consensus 82 ~~sp~~~-~l~s~~~dd~~~~~~~~ 105 (136)
.-+-.|. ++.+++.|...+.+++.
T Consensus 139 ~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred CccccCCeEEEecCCCceEEEEeec
Confidence 8555565 56666666678788777
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.96 E-value=3.6e-09 Score=81.65 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=73.6
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC--cee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ--PIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~ 79 (136)
.+.|.++.+ +|.++.....++.... +.+...++.+.|+|++.++++|+.||.|+||++.++++...+..... .|+
T Consensus 359 ssRDdtl~v--iDlRt~eI~~~~sA~g-~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~ 435 (459)
T KOG0288|consen 359 SSRDDTLKV--IDLRTKEIRQTFSAEG-FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAIT 435 (459)
T ss_pred ecCCCceee--eecccccEEEEeeccc-cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceE
Confidence 356777776 8888888777776432 12222578999999999999999999999999999998887766543 599
Q ss_pred EEEEccCCCEEEEEEccc
Q 041215 80 CSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd 97 (136)
+++|+|.|..+++++.+-
T Consensus 436 s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 436 SLSWNPSGSGLLSADKQK 453 (459)
T ss_pred EEEEcCCCchhhcccCCc
Confidence 999999999999876543
No 87
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=7.2e-09 Score=75.39 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=74.5
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc--ceeeecc--------
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK--QRLKAMS-------- 72 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~-------- 72 (136)
|-.|.-.+.+||..+++....|.+|.+ .|+.+.|+.+...+++|+.|..+++||.++. +.++.+.
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~a-----qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S 150 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLA-----QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS 150 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccc-----eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence 444555566799999999999999999 9999999999999999999999999997643 2222111
Q ss_pred ------------------------------cCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215 73 ------------------------------RCGQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 73 ------------------------------~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
-...||+|++|++++.-.+.++-+....++
T Consensus 151 i~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLl 210 (307)
T KOG0316|consen 151 IDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLL 210 (307)
T ss_pred EEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeec
Confidence 125799999999999877777766654443
No 88
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.95 E-value=2.4e-09 Score=80.52 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=75.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec---ccCCCc
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM---SRCGQP 77 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~h~~~ 77 (136)
.||.|++|.+ ||.........++. ++..++|.+++|||.|.+|+.|..-..+++||+.+.++.... .+|.+.
T Consensus 189 S~srD~tvKl--FDfsK~saKrA~K~---~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 189 SGSRDNTVKL--FDFSKTSAKRAFKV---FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eccCCCeEEE--EecccHHHHHHHHH---hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 3788999987 76654433333332 222338999999999999999999999999999998775432 468899
Q ss_pred eeEEEEccCCCEEEEEEcccccccc
Q 041215 78 IPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
|++|.|++.+++.++|+.|+..++.
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~Iklw 288 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLW 288 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEee
Confidence 9999999999999999999865544
No 89
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.94 E-value=4.9e-09 Score=80.70 Aligned_cols=91 Identities=21% Similarity=0.381 Sum_probs=79.2
Q ss_pred CCceeceEEEEEeeCC-----CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215 1 VGSIEGRVGVHHLDDS-----QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~-----~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
.||.|-+|-||.+-.. ..++...|.+|.. .|.-+.|||-. +.|++++.|..|.+||+.+++.+.++. |
T Consensus 99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r-----rVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-h 172 (472)
T KOG0303|consen 99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR-----RVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-H 172 (472)
T ss_pred cCCCCceEEEEECCCcccccCcccceEEEeecce-----eEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-C
Confidence 4788889988655322 2356788999999 99999999998 789999999999999999999888886 9
Q ss_pred CCceeEEEEccCCCEEEEEEccc
Q 041215 75 GQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+.|.+++|+-+|.++++.+.|-
T Consensus 173 pd~i~S~sfn~dGs~l~TtckDK 195 (472)
T KOG0303|consen 173 PDMVYSMSFNRDGSLLCTTCKDK 195 (472)
T ss_pred CCeEEEEEeccCCceeeeecccc
Confidence 99999999999999999998876
No 90
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.93 E-value=4.4e-09 Score=80.47 Aligned_cols=95 Identities=15% Similarity=0.270 Sum_probs=80.1
Q ss_pred CCceeceEEEEEeeCCCC---cceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc-eeeecccCC
Q 041215 1 VGSIEGRVGVHHLDDSQQ---SKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ-RLKAMSRCG 75 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~---~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~ 75 (136)
+||.|-.+++ ||++++ ....+|.+|.+ -|.++.|+|.. ..|++++.|+++++||+++.. .++.+.+|.
T Consensus 317 ~gssdr~irl--~DPR~~~gs~v~~s~~gH~n-----wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~ 389 (423)
T KOG0313|consen 317 SGSSDRHIRL--WDPRTGDGSVVSQSLIGHKN-----WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN 389 (423)
T ss_pred ecCCCCceee--cCCCCCCCceeEEeeecchh-----hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC
Confidence 4788888988 999754 34678899999 99999999988 679999999999999999865 889999999
Q ss_pred CceeEEEEccCCCEEEEEEccccccccc
Q 041215 76 QPIPCSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
+.|.++.|+..+ ++++|+.|.-...+.
T Consensus 390 DKvl~vdW~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 390 DKVLSVDWNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred ceEEEEeccCCc-eEEeccCcceEEEec
Confidence 999999997654 788888877665443
No 91
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=8.1e-10 Score=90.00 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=84.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
||.|+.+.+ ||.+..-+.+.+.+|.. .|..++|+|+|.+++.+++|..+++||...|..+.+|..|.+.++.+
T Consensus 130 gStdtd~~i--wD~Rk~Gc~~~~~s~~~-----vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sl 202 (825)
T KOG0267|consen 130 GSTDTDLKI--WDIRKKGCSHTYKSHTR-----VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSL 202 (825)
T ss_pred cccccccee--hhhhccCceeeecCCcc-----eeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccc
Confidence 788899988 88888888999999988 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccc
Q 041215 82 TFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~ 99 (136)
.|+|...++++|+.|...
T Consensus 203 e~hp~e~Lla~Gs~d~tv 220 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTV 220 (825)
T ss_pred ccCchhhhhccCCCCcee
Confidence 999999999998887743
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=1.3e-08 Score=73.84 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=75.1
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEe--eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKC--HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~--h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
.||.|.+|+. ||.+-+....++.. |.+.-+--.|.+++..|.|++|++|-.|....+||+.-+..++.+..|...|
T Consensus 199 sgsqdktirf--wdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi 276 (350)
T KOG0641|consen 199 SGSQDKTIRF--WDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI 276 (350)
T ss_pred ccCCCceEEE--EeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce
Confidence 4788999998 55554455444421 2221111278999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEEccc
Q 041215 79 PCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd 97 (136)
.||.|+|...++++++-|.
T Consensus 277 r~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred eEEEeCCCceEEEEecccc
Confidence 9999999999999875443
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=8.1e-09 Score=77.53 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=72.1
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.|+.||.|.+ |+........++++|.+ .|+.++.||.+.+..+.+.|+.+++||+-+|.......-- ..-+.
T Consensus 102 S~sdDG~i~i--w~~~~W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~ 173 (362)
T KOG0294|consen 102 SGSDDGHIII--WRVGSWELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATL 173 (362)
T ss_pred eecCCCcEEE--EEcCCeEEeeeeccccc-----ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-Cccee
Confidence 3788999998 88888899999999999 9999999999999999999999999999988765544322 22344
Q ss_pred EEEccCCCEEEEEEc
Q 041215 81 STFNTDGSIFAYSVC 95 (136)
Q Consensus 81 v~~sp~~~~l~s~~~ 95 (136)
|.|+|.|.+++.+..
T Consensus 174 v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGR 188 (362)
T ss_pred eEEcCCCCEEEEEec
Confidence 889999987776654
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.92 E-value=5.2e-09 Score=87.97 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=80.8
Q ss_pred CCceeceEEEEEeeC----------------CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC
Q 041215 1 VGSIEGRVGVHHLDD----------------SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 1 vgs~dG~v~i~~~d~----------------~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~ 64 (136)
+||.|..|-||.++. +..+....|.+|.+ .|..++|+|++.+|++++.|++|.+||..+
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDVNWSPDDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----ccceeccCCCccEEEEecccceEEEEcccc
Confidence 488899999988772 11235678889999 999999999999999999999999999999
Q ss_pred cceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 65 KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 65 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+.+..+.+|.+.|-.+.|.|-|+++|+-++|-
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCCc
Confidence 999999999999999999999999999865544
No 95
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=1.6e-09 Score=88.79 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=84.8
Q ss_pred CCceeceEEEEEeeCCC---CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215 1 VGSIEGRVGVHHLDDSQ---QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ 76 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~---~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 76 (136)
+++..|.|.+ ||... .+++..|..|.. .+++++||+.. .+|++|+.||.|++||++......++.+-..
T Consensus 105 T~s~nG~i~v--Wdlnk~~rnk~l~~f~EH~R-----s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 105 TCSTNGVISV--WDLNKSIRNKLLTVFNEHER-----SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred eecCCCcEEE--EecCccccchhhhHhhhhcc-----ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence 3677899988 55544 778889999999 99999999887 7999999999999999999888888888888
Q ss_pred ceeEEEEccC-CCEEEEEEcccccccccccCCC
Q 041215 77 PIPCSTFNTD-GSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 77 ~v~~v~~sp~-~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
.|+.|.|+|. +..|+++...++....+...|.
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~ 210 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD 210 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCch
Confidence 9999999996 4577777777777666776666
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=4.2e-09 Score=82.42 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=79.8
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
+|..+|.|.+ ||.++...+..+.+|+. +|..+.|+|++ ..|++|++|+.+++||+.+......+.+|.+-|.
T Consensus 85 aGD~sG~V~v--fD~k~r~iLR~~~ah~a-----pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 85 AGDESGHVKV--FDMKSRVILRQLYAHQA-----PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred ccCCcCcEEE--eccccHHHHHHHhhccC-----ceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 3566788877 88777778899999999 99999999988 6788888899999999998877668899999999
Q ss_pred EEEEccCCC-EEEEEEccccccccccc
Q 041215 80 CSTFNTDGS-IFAYSVCYDWSKGAENH 105 (136)
Q Consensus 80 ~v~~sp~~~-~l~s~~~dd~~~~~~~~ 105 (136)
|.+|+|... +++||+-|...++.+-.
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEec
Confidence 999999866 66666555555554443
No 97
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.91 E-value=3.6e-09 Score=78.84 Aligned_cols=87 Identities=23% Similarity=0.365 Sum_probs=68.5
Q ss_pred eeceEEEEEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC-cceeeecccCCCceeE
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPIPC 80 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~ 80 (136)
.|+++. .||.++......+. .|.. .|..+.|+|+- ..|++|++||.|++||.+. ...+.++.+|..+|.+
T Consensus 191 ~d~tl~--~~D~RT~~~~~sI~dAHgq-----~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 191 SDSTLQ--FWDLRTMKKNNSIEDAHGQ-----RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred CCCcEE--EEEccchhhhcchhhhhcc-----eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 355554 48888776666554 4655 89999999998 6899999999999999985 5678899999999999
Q ss_pred EEEccCCCEEEEEEccc
Q 041215 81 STFNTDGSIFAYSVCYD 97 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd 97 (136)
|.|+|....|+..++.|
T Consensus 264 VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSD 280 (370)
T ss_pred EEecCccceEEEecCCC
Confidence 99999776544444444
No 98
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.91 E-value=1.5e-09 Score=86.19 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=68.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
.|.||.++| ||-.+.+.+-.++..-+ ...|++|+|||+++++|+.|..|.||.+..++++..=.+|.++|..|
T Consensus 308 VSqDGfLRv--F~fdt~eLlg~mkSYFG-----GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V 380 (636)
T KOG2394|consen 308 VSQDGFLRI--FDFDTQELLGVMKSYFG-----GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV 380 (636)
T ss_pred EecCceEEE--eeccHHHHHHHHHhhcc-----ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence 478999999 55455566666677777 89999999999999999999999999999999999989999999999
Q ss_pred EEcc
Q 041215 82 TFNT 85 (136)
Q Consensus 82 ~~sp 85 (136)
+|.|
T Consensus 381 aFDp 384 (636)
T KOG2394|consen 381 AFDP 384 (636)
T ss_pred eecc
Confidence 9986
No 99
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.91 E-value=1.2e-08 Score=82.86 Aligned_cols=85 Identities=19% Similarity=0.346 Sum_probs=76.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
||.|.++++ ||..++....++.+|.+ .|.++...+ ..+++|+.|.+|++|+++++.++..+.+|.++|++|
T Consensus 267 gS~D~t~rv--Wd~~sg~C~~~l~gh~s-----tv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 267 GSTDKTERV--WDCSTGECTHSLQGHTS-----SVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EecCCcEEe--EecCCCcEEEEecCCCc-----eEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 788999999 77899999999999999 888887754 678889999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccc
Q 041215 82 TFNTDGSIFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd 97 (136)
.++ +.++++|+.|.
T Consensus 338 ~~~--~~~lvsgs~d~ 351 (537)
T KOG0274|consen 338 QLD--EPLLVSGSYDG 351 (537)
T ss_pred Eec--CCEEEEEecCc
Confidence 997 77888877766
No 100
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.90 E-value=1e-08 Score=76.54 Aligned_cols=89 Identities=18% Similarity=0.310 Sum_probs=63.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEE-----------------------------------------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLN----------------------------------------- 40 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~----------------------------------------- 40 (136)
|.+|+.|.+ ||++.+...+++.+|.. +|+.++
T Consensus 192 ggIdn~ikv--Wd~r~~d~~~~lsGh~D-----tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn 264 (338)
T KOG0265|consen 192 GGIDNDIKV--WDLRKNDGLYTLSGHAD-----TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN 264 (338)
T ss_pred ccccCceee--eccccCcceEEeecccC-----ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence 667888877 88888888888888876 555444
Q ss_pred ---------EeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 41 ---------FHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 41 ---------~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
|+|++..+..++.|..+++||......+..+++|.+.|++++|+|...++.++++|-
T Consensus 265 feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 265 FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred hhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence 455555555555555566666655566666778888888888888888888887764
No 101
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.88 E-value=4.3e-09 Score=86.23 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=84.3
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
||-.||.|.| |+..+.....+|.+|.. +|+++.|...|..|++|+.|+.|-+||+-...-...+.+|.+.|+.
T Consensus 82 VGYaDGsVqi--f~~~s~~~~~tfngHK~-----AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~ 154 (888)
T KOG0306|consen 82 VGYADGSVQI--FSLESEEILITFNGHKA-----AVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ 154 (888)
T ss_pred EEecCceEEe--eccCCCceeeeeccccc-----ceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence 5778999998 77777789999999999 9999999999999999999999999999877778899999999999
Q ss_pred EEEccCCCEEEEEEcccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~ 100 (136)
+-|..+..++++.+.|.+.+
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK 174 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIK 174 (888)
T ss_pred HhccCCCeEEEEeccCceEE
Confidence 99999888999998888543
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.87 E-value=1.8e-08 Score=81.79 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=78.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
||.|-+|.+ |+..+++.+.++.+|.. +|.++.++ +.++++|+.|++|.+||+.+++++..+.+|...|.++
T Consensus 307 gs~D~tVkV--W~v~n~~~l~l~~~h~~-----~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl 377 (537)
T KOG0274|consen 307 GSRDNTVKV--WDVTNGACLNLLRGHTG-----PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSL 377 (537)
T ss_pred ccCCceEEE--EeccCcceEEEeccccc-----cEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEE
Confidence 689999998 66688999999999999 99999998 7899999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccc
Q 041215 82 TFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~ 99 (136)
.+.+. ..+++|+-|...
T Consensus 378 ~~~~~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 378 IVDSE-NRLLSGSLDTTI 394 (537)
T ss_pred EecCc-ceEEeeeeccce
Confidence 88666 788888777533
No 103
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.87 E-value=2.7e-09 Score=81.30 Aligned_cols=67 Identities=12% Similarity=0.251 Sum_probs=49.6
Q ss_pred CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215 32 EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 32 ~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
|.++|+.+.|.. .++++++.|.+|++|++.+++.+.++.+|...|-|++| .++++++|++|.....+
T Consensus 319 HrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlw 385 (499)
T KOG0281|consen 319 HRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 385 (499)
T ss_pred hhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEE
Confidence 344666666643 57888888888888888888888888888877888777 77888888887754433
No 104
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.87 E-value=1.2e-08 Score=75.08 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=80.9
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+||.|..+++ ||+........+.-++- +|..++|+-+|++|++++.|..|-|=++++|..+.++ .+.++.+.
T Consensus 206 ~GsADAlvSL--WD~~ELiC~R~isRldw-----pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-~~~~~t~t 277 (313)
T KOG1407|consen 206 TGSADALVSL--WDVDELICERCISRLDW-----PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-PCEGPTFT 277 (313)
T ss_pred eccccceeec--cChhHhhhheeeccccC-----ceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-eccCCcee
Confidence 5888999988 88887778888888888 9999999999999999999999999999999998888 56789999
Q ss_pred EEEccCCCEEEEEEccccc
Q 041215 81 STFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~ 99 (136)
|+|+|...+||.+++|--.
T Consensus 278 VAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 278 VAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred EEecCCCceeeEEecCCCC
Confidence 9999999999998776443
No 105
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.87 E-value=1.5e-08 Score=77.62 Aligned_cols=95 Identities=17% Similarity=0.259 Sum_probs=74.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC---CEEEEEcCCCcEEEEeCCCcce----eeeccc
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH---HTFATAGSDGAFNFWDKDSKQR----LKAMSR 73 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~~~~----~~~~~~ 73 (136)
.|+.||++++ ||. .|+..+++.+|.+ +|..++|.-.. ..|++++.|.++++|-.+.+.. +....+
T Consensus 120 tgsYDg~~ri--Wd~-~Gk~~~~~~Ght~-----~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~G 191 (423)
T KOG0313|consen 120 TGSYDGTSRI--WDL-KGKSIKTIVGHTG-----PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRG 191 (423)
T ss_pred EeecCCeeEE--Eec-CCceEEEEecCCc-----ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcc
Confidence 3789999999 543 4788899999999 99988885333 4699999999999998876543 344459
Q ss_pred CCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215 74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
|...|.+|+..+++..+++|+ +|-...++.
T Consensus 192 Hk~~V~sVsv~~sgtr~~SgS-~D~~lkiWs 221 (423)
T KOG0313|consen 192 HKRSVDSVSVDSSGTRFCSGS-WDTMLKIWS 221 (423)
T ss_pred cccceeEEEecCCCCeEEeec-ccceeeecc
Confidence 999999999999999999764 554444544
No 106
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=8e-09 Score=77.77 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=57.4
Q ss_pred eeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 36 v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
..|+.|++.|.+|+.|..+|.|-+||+.+......+.+|--+|+|++||++|+.|+|++.|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~ 87 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW 87 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc
Confidence 57999999999999999999999999999888888999999999999999999999876654
No 107
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.86 E-value=8.2e-09 Score=77.20 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=73.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCc-cee-----------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSK-QRL----------- 68 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~-~~~----------- 68 (136)
|..|-.|++ .|..++...++|.+|+. .|.++.|+|... .|++|+.||.|++||+..- .+.
T Consensus 164 gtr~~~VrL--CDi~SGs~sH~LsGHr~-----~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 164 GTRDVQVRL--CDIASGSFSHTLSGHRD-----GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP 236 (397)
T ss_pred ecCCCcEEE--EeccCCcceeeeccccC-----ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccC
Confidence 445555665 88899999999999999 999999999985 6889999999999998642 122
Q ss_pred ---eecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 69 ---KAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 69 ---~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
..-..|.+.|+.++|+.++.++++++.|+
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCcc
Confidence 22335789999999999999999988877
No 108
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.84 E-value=1.1e-08 Score=53.94 Aligned_cols=38 Identities=34% Similarity=0.599 Sum_probs=35.8
Q ss_pred cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEe
Q 041215 19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWD 61 (136)
Q Consensus 19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd 61 (136)
+...++.+|.+ .|.+|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~-----~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSS-----SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSS-----SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCC-----cEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999 999999999999999999999999997
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=5.2e-08 Score=77.71 Aligned_cols=100 Identities=20% Similarity=0.344 Sum_probs=82.8
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcC--CCcEEEEeCCCcceeeecccCCCc
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGS--DGAFNFWDKDSKQRLKAMSRCGQP 77 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~ 77 (136)
.|..|..+.| ||.....+...+..|.. +|-+++|+|.. .+|++|+- |+.|++||+.++..+... ....+
T Consensus 318 SGgnDN~~~I--wd~~~~~p~~~~~~H~a-----AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQ 389 (484)
T KOG0305|consen 318 SGGNDNVVFI--WDGLSPEPKFTFTEHTA-----AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQ 389 (484)
T ss_pred cCCCccceEe--ccCCCccccEEEeccce-----eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-ccCCc
Confidence 3678888988 77788889999999999 99999999988 68888774 789999999999888777 55689
Q ss_pred eeEEEEccCCCEEEEEEcccccccccccCCC
Q 041215 78 IPCSTFNTDGSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
|.+|.|++...-++++.++......-|.+|.
T Consensus 390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 390 VCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred eeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 9999999999988888776655444555544
No 110
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.2e-08 Score=77.23 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=75.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcceeeec--------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQRLKAM-------- 71 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~~~~~~-------- 71 (136)
+-..|.|++ ||..+++.+..|+++.. .++.++|... .+.+.+|+.||+|++||++.......+
T Consensus 46 ~lSngsv~l--yd~~tg~~l~~fk~~~~-----~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 46 SLSNGSVRL--YDKGTGQLLEEFKGPPA-----TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred EecCCeEEE--EeccchhhhheecCCCC-----cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 345788887 88888999999999998 9999999763 488999999999999997642211100
Q ss_pred -------------------------------------------ccCCCceeEEEEccCC-CEEEEEEcccccccccccCC
Q 041215 72 -------------------------------------------SRCGQPIPCSTFNTDG-SIFAYSVCYDWSKGAENHNP 107 (136)
Q Consensus 72 -------------------------------------------~~h~~~v~~v~~sp~~-~~l~s~~~dd~~~~~~~~~~ 107 (136)
..|.+.|++++|+|+. .+|++|+.|+..-.|+.+.+
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 0478889999999865 57888888887766666544
Q ss_pred C
Q 041215 108 A 108 (136)
Q Consensus 108 ~ 108 (136)
+
T Consensus 199 ~ 199 (376)
T KOG1188|consen 199 N 199 (376)
T ss_pred c
Confidence 3
No 111
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.81 E-value=1.2e-08 Score=85.83 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=74.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC------C
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC------G 75 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h------~ 75 (136)
+|.|.+|.| |+.++...+..+.+|.+ .|-.+.|.|.|++|++-++|++|++|++.+..+.+.+..+ .
T Consensus 147 ~s~DnsVii--wn~~tF~~~~vl~~H~s-----~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 147 VSLDNSVII--WNAKTFELLKVLRGHQS-----LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred ecccceEEE--Eccccceeeeeeecccc-----cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 678999988 88899999999999999 9999999999999999999999999998776666655543 3
Q ss_pred CceeEEEEccCCCEEEEE
Q 041215 76 QPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~ 93 (136)
.-+..+.|||||.+|++.
T Consensus 220 T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASP 237 (942)
T ss_pred ceeeecccCCCcCeecch
Confidence 466789999999999986
No 112
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=7.7e-09 Score=80.32 Aligned_cols=95 Identities=15% Similarity=0.300 Sum_probs=73.8
Q ss_pred CCceeceEEEEEeeCCCC-cceeEEE------------------eeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEE
Q 041215 1 VGSIEGRVGVHHLDDSQQ-SKNFTFK------------------CHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFW 60 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~-~~~~~l~------------------~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vw 60 (136)
+|+.|-.|.||.+|+... .+..+|. +|.. .|..++|+..- +.|++||.|.+|.+|
T Consensus 197 iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-----avl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 197 IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-----AVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-----HHHHHHhccccceeEEecCCCceEEEE
Confidence 578899999988887532 2333332 3555 88899998666 789999999999999
Q ss_pred eCCCcceeeecccCCCceeEEEEccCCC-EEEEEEcccccc
Q 041215 61 DKDSKQRLKAMSRCGQPIPCSTFNTDGS-IFAYSVCYDWSK 100 (136)
Q Consensus 61 d~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~dd~~~ 100 (136)
|+.++++...+..|.+.|++++|+|... ++++|+-|....
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~ 312 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVA 312 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEE
Confidence 9999999999988999999999999765 566665444433
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5.7e-09 Score=76.15 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=74.3
Q ss_pred CCceeceEEEEEeeCCCC-cceeEEEeeeCCCCccceeEEEEeCC---C-----------CEEEEEcCCCcEEEEeCCCc
Q 041215 1 VGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDGSEIYSVNSLNFHPI---H-----------HTFATAGSDGAFNFWDKDSK 65 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~-~~~~~l~~h~~~~~~~~v~~l~~~p~---~-----------~~l~s~~~dg~v~vwd~~~~ 65 (136)
+||.||.|++..++...+ .......+|.- .|++++|.|- | ..|++|+.|..|++|...++
T Consensus 121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~-----GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEI-----GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred EeeCCCcEEEEEEcCCCCccchhhhhcccc-----ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 589999999977877633 33455678888 9999999987 3 35999999999999999875
Q ss_pred --ceeeecccCCCceeEEEEccCC----CEEEEEEcccc
Q 041215 66 --QRLKAMSRCGQPIPCSTFNTDG----SIFAYSVCYDW 98 (136)
Q Consensus 66 --~~~~~~~~h~~~v~~v~~sp~~----~~l~s~~~dd~ 98 (136)
...+.+.+|.+.|+.++|.|.- ..+|+++.|..
T Consensus 196 ~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 196 SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 2345688999999999999964 46888777763
No 114
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.80 E-value=1.2e-08 Score=83.76 Aligned_cols=91 Identities=27% Similarity=0.408 Sum_probs=80.3
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.||.|.+|.+|-+|- |.....|-+|+. .|-++.|.|..+++++++.|+.|+.||-..-..++.+.+|...|.|
T Consensus 567 TgSADKnVKiWGLdF--GDCHKS~fAHdD-----Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDF--GDCHKSFFAHDD-----SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred eccCCCceEEecccc--chhhhhhhcccC-----ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeee
Confidence 378899999976654 466667777777 9999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEcccc
Q 041215 81 STFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~ 98 (136)
++.+|+|.++++++.|--
T Consensus 640 Lav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred eEEcCCCCeEEeccCCce
Confidence 999999999999877553
No 115
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=7e-09 Score=80.31 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=66.0
Q ss_pred EEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC-C
Q 041215 11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG-S 88 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~ 88 (136)
.+||.+..+....+.+|+. -. -+-.-+|.. +..++++|+.|+.|++|+-.++..+.++++|...|+||+|+|.. .
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq--~~-fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQ--GH-FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred EEeecchhhHHHHhhcccc--cc-eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence 3466666677777777764 11 233445643 34899999999999999999999999999999999999999976 4
Q ss_pred EEEEEEccccc
Q 041215 89 IFAYSVCYDWS 99 (136)
Q Consensus 89 ~l~s~~~dd~~ 99 (136)
++|+|+.|+..
T Consensus 497 m~ASasDDgtI 507 (519)
T KOG0293|consen 497 MFASASDDGTI 507 (519)
T ss_pred HhhccCCCCeE
Confidence 78877766644
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.77 E-value=4.1e-08 Score=74.26 Aligned_cols=124 Identities=18% Similarity=0.266 Sum_probs=93.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~ 80 (136)
||+|-+-.+ ||.+++.....|.+|+. ..+.++-||..+++++.+.|-+.++||+.. -..+..|.+|.+.|++
T Consensus 290 aSWDRTAnl--wDVEtge~v~~LtGHd~-----ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 290 ASWDRTANL--WDVETGEVVNILTGHDS-----ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred eecccccee--eeeccCceeccccCcch-----hccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 678888766 89999999999999999 999999999999999999999999999974 3556789999999999
Q ss_pred EEEccCCCEEEEEEccc----ccc-----------------------cc-cccCCCCCcceEEEEcCCcccccccCCCCC
Q 041215 81 STFNTDGSIFAYSVCYD----WSK-----------------------GA-ENHNPATAKTYIYLHLPQETEVKGKPRAGT 132 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd----~~~-----------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (136)
+.|+-+.+.+ +|+.|- |.. +. -.+.|- +--.++++.++-+.+-|-||--+
T Consensus 363 ~vF~~dd~vV-SgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPh-DNRqvRlfDlnG~RlaRlPrtsR 440 (481)
T KOG0300|consen 363 VVFNTDDRVV-SGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPH-DNRQVRLFDLNGNRLARLPRTSR 440 (481)
T ss_pred EEEecCCcee-ecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEecc-CCceEEEEecCCCccccCCcccc
Confidence 9999887644 454443 221 11 111222 44556677777777777666544
Q ss_pred CC
Q 041215 133 SG 134 (136)
Q Consensus 133 ~~ 134 (136)
.|
T Consensus 441 qg 442 (481)
T KOG0300|consen 441 QG 442 (481)
T ss_pred cc
Confidence 43
No 117
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.77 E-value=2.5e-08 Score=73.17 Aligned_cols=99 Identities=13% Similarity=0.277 Sum_probs=76.5
Q ss_pred CceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
|+.|..++| ||.+ ...+...+.+|.+ .|..+-|....+.+.+.+.|+.|++||..++..++.+ ....+|++
T Consensus 118 gg~ekllrv--fdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL-~~~s~VtS 189 (334)
T KOG0278|consen 118 GGQEKLLRV--FDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL-EFNSPVTS 189 (334)
T ss_pred cchHHHhhh--hhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE-ecCCCCcc
Confidence 566777777 7664 3456677889999 9999999766677778899999999999999988887 45589999
Q ss_pred EEEccCCCEEEEEEccc--------ccccccccCCC
Q 041215 81 STFNTDGSIFAYSVCYD--------WSKGAENHNPA 108 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd--------~~~~~~~~~~~ 108 (136)
+.++++|+++.++-+.. +.++..+.+|.
T Consensus 190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~ 225 (334)
T KOG0278|consen 190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC 225 (334)
T ss_pred eeeccCCCEEEEecCceeEEeccccccceeeccCcc
Confidence 99999999988764422 44455555555
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.76 E-value=1.2e-07 Score=74.09 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=82.5
Q ss_pred CCceeceEEEEEeeCCCCcceeEEE-eeeC------CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc----ceee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFK-CHRD------GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK----QRLK 69 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~-~h~~------~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~----~~~~ 69 (136)
.||.+|.|.+ |+.-+.+++++.. .|.- .+.++-|++++..|...++++|+.+|.|++|-+..+ ..+.
T Consensus 343 sGSdnG~IaL--Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~ 420 (479)
T KOG0299|consen 343 SGSDNGSIAL--WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY 420 (479)
T ss_pred eccCCceEEE--eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee
Confidence 4899999988 5556667776654 2321 334457889999999999999999999999998876 3344
Q ss_pred ecccCCCceeEEEEccCCCEEEEEEcccccccccccCCC
Q 041215 70 AMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 70 ~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
.++ -.+.|++++|+++|..+++|.+-....+.++....
T Consensus 421 ~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~ 458 (479)
T KOG0299|consen 421 SLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKS 458 (479)
T ss_pred ecc-cccEEEEEEEccCCCEEEEecccccccceeeEeec
Confidence 444 46899999999999988889888888888887665
No 119
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.76 E-value=2.1e-08 Score=76.80 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=60.6
Q ss_pred EEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc---ceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215 23 TFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK---QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 23 ~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
.|.+|.. .|..+.|+|.. ..|++|+.|++|+|||++.+ .++.+ ..|.+.|+-|.|+-...+||+|+.++.
T Consensus 252 Pf~gH~~-----SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt 325 (440)
T KOG0302|consen 252 PFTGHTK-----SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGT 325 (440)
T ss_pred ccccccc-----chhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCce
Confidence 3456777 99999999988 79999999999999999987 44444 789999999999999888998877775
Q ss_pred cc
Q 041215 99 SK 100 (136)
Q Consensus 99 ~~ 100 (136)
.+
T Consensus 326 ~~ 327 (440)
T KOG0302|consen 326 LS 327 (440)
T ss_pred EE
Confidence 43
No 120
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.76 E-value=2.7e-08 Score=73.35 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=71.1
Q ss_pred CceeceEEEEEeeCCCCcc-e-eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSK-N-FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~-~-~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
|+.+-.+..|.++-.++.. + ..+.-..- .|..++.-||+..+++++.|+.|++|+.+++..+..+..|.+.|+
T Consensus 223 gga~dkl~~~Sl~~s~gslq~~~e~~lknp-----Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn 297 (323)
T KOG0322|consen 223 GGADDKLVMYSLNHSTGSLQIRKEITLKNP-----GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN 297 (323)
T ss_pred CCccccceeeeeccccCcccccceEEecCC-----CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee
Confidence 4445555555665554322 2 22222222 688999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEEccc
Q 041215 80 CSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd 97 (136)
+++|+|+..++|+|+.|.
T Consensus 298 ~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDA 315 (323)
T ss_pred EEEeCCCCchhhhccCCc
Confidence 999999999999887765
No 121
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.76 E-value=9.6e-09 Score=84.39 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=62.3
Q ss_pred ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEcc-CCCEEEEEEccc
Q 041215 20 KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT-DGSIFAYSVCYD 97 (136)
Q Consensus 20 ~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~dd 97 (136)
++..|.+|.+ .|..++|+.+ .+|.+++-|.+|++|++....+++.| .|.+-|+||+|+| |.++|++|+-|.
T Consensus 361 P~~ef~GHt~-----DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~ 432 (712)
T KOG0283|consen 361 PFCEFKGHTA-----DILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDG 432 (712)
T ss_pred chhhhhccch-----hheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeeccccc
Confidence 4556677777 9999999965 77889999999999999999999999 8999999999999 667999887766
No 122
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.75 E-value=1.3e-08 Score=76.63 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=71.4
Q ss_pred eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-----------------c-ceeeecccCCCceeEEEE
Q 041215 22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-----------------K-QRLKAMSRCGQPIPCSTF 83 (136)
Q Consensus 22 ~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-----------------~-~~~~~~~~h~~~v~~v~~ 83 (136)
..+..|++ ++.+.+|+|||.++++|+.|..|+++|++. + .++.++-.|.++|+++.|
T Consensus 106 ~ylt~HK~-----~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 106 KYLTSHKS-----PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred EEEeeccc-----ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 44678999 999999999999999999999999999861 1 345677789999999999
Q ss_pred ccCCCEEEEEEcccccccccccCCC
Q 041215 84 NTDGSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 84 sp~~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
+|...+|++|+.|...+.|++.-|.
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~s 205 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTS 205 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHH
Confidence 9999999999999999988876554
No 123
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.75 E-value=3e-08 Score=81.32 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=81.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEee---eCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCH---RDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h---~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
+..|.+|+| ||+.++++...|++. .+ ....+.+.|.|.+|++...|.++.++|+.+++++.++.+|...|
T Consensus 614 ~cQDrniri--f~i~sgKq~k~FKgs~~~eG-----~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 614 VCQDRNIRI--FDIESGKQVKSFKGSRDHEG-----DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred EecccceEE--EeccccceeeeecccccCCC-----ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhe
Confidence 456888988 999999999999864 45 67788999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEEcccc
Q 041215 79 PCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~ 98 (136)
+.|-|.+|.+.|++.++|.-
T Consensus 687 TG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred eeeeecccchhheeecCCce
Confidence 99999999999999988873
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=6.3e-08 Score=80.75 Aligned_cols=89 Identities=19% Similarity=0.309 Sum_probs=71.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC------- 74 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h------- 74 (136)
||.|=.|.+ .+.....+...+.+|++ +|.+++|+|++.+|++.+.||.|++|+++++.+.+.+.+-
T Consensus 114 gsdD~~vK~--~~~~D~s~~~~lrgh~a-----pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 114 GSDDTAVKL--LNLDDSSQEKVLRGHDA-----PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred ecCceeEEE--EeccccchheeecccCC-----ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 555656665 66666778889999999 9999999999999999999999999999998777666542
Q ss_pred -CCceeEEEEccCCCEEEEEEccc
Q 041215 75 -GQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 75 -~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
...+..++|+|++..++..+.++
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~~d~ 210 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPPVDN 210 (933)
T ss_pred ccceeeeeeecCCCCeEEeeccCC
Confidence 35667899999966555555544
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.73 E-value=5.2e-08 Score=79.28 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=74.9
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.||.|.+|++ | +.++.+.+|++|.. -|..+++-+++. +++|+.||.|++|++ +++++.++.+|..-|.+
T Consensus 156 TgsaDKtIkl--W--k~~~~l~tf~gHtD-----~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 156 TGSADKTIKL--W--KGGTLLKTFSGHTD-----CVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred eccCcceeee--c--cCCchhhhhccchh-----heeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence 3778888877 6 33678888999988 999999998755 558889999999999 78899999999999999
Q ss_pred EEEccCCCEEEEEEccccc
Q 041215 81 STFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~ 99 (136)
+...+++..+++++.|...
T Consensus 225 is~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred EEecCCCCeEEEecCCceE
Confidence 9999999999988887743
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.71 E-value=9.7e-08 Score=79.08 Aligned_cols=92 Identities=22% Similarity=0.357 Sum_probs=77.2
Q ss_pred CCceeceEEEEEeeCCCCcceeEE---EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee---------
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTF---KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL--------- 68 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l---~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~--------- 68 (136)
+|+..|+|.+ |+.+++-....| ..|++ +|.+++.....+.+++++.+|.+.+||+..+..+
T Consensus 465 IG~S~G~Id~--fNmQSGi~r~sf~~~~ah~~-----~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~ 537 (910)
T KOG1539|consen 465 IGYSKGTIDR--FNMQSGIHRKSFGDSPAHKG-----EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSI 537 (910)
T ss_pred EeccCCeEEE--EEcccCeeecccccCccccC-----ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCc
Confidence 3677888887 888988888888 57999 9999999888899999999999999987654322
Q ss_pred --------------------------------eecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 69 --------------------------------KAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 69 --------------------------------~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
.+|.+|.+.|+.++|||+|+++++++-|...
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tI 600 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTI 600 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcE
Confidence 2333799999999999999999999988754
No 127
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.67 E-value=5.2e-08 Score=77.30 Aligned_cols=91 Identities=16% Similarity=0.301 Sum_probs=66.0
Q ss_pred CceeceEEEEEeeCCCCcceeEE-EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeeecccC--CCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKAMSRC--GQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h--~~~ 77 (136)
|..||.|-+|.+--....+.+.. +.|... ..|+||+|+++|++|++-+.|+.+++||+.+ .+++.+..+- .-+
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g---~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~ 411 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPG---QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP 411 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCC---CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence 56799998855422222333332 456442 2799999999999999999999999999986 4555555543 234
Q ss_pred eeEEEEccCCCEEEEEEc
Q 041215 78 IPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~ 95 (136)
-+.++|||+.+++++|.+
T Consensus 412 ~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 412 GTDCCFSPDDKLILTGTS 429 (641)
T ss_pred CCccccCCCceEEEeccc
Confidence 578899999999999855
No 128
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.66 E-value=1.2e-07 Score=73.26 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=72.6
Q ss_pred CceeceEEEEEeeCCC--C-----cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC--------C--
Q 041215 2 GSIEGRVGVHHLDDSQ--Q-----SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD--------S-- 64 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~--~-----~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~--------~-- 64 (136)
|..|..|+||...... + +-...|..|.. .|+++.|+|+|.+|++|+++|.|.+|-.. +
T Consensus 32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~-----aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTR-----AVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred ccCccceeeeeeeecCCCCCceeEEEeecccCCcc-----eeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence 5668889998875431 1 12345666778 99999999999999999999999999654 2
Q ss_pred ------cceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 65 ------KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 65 ------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
......+.+|...|..++|+|++.++++++-|+-.
T Consensus 107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~ 147 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSV 147 (434)
T ss_pred hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceE
Confidence 12234566899999999999999999999887743
No 129
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.66 E-value=3.3e-08 Score=77.53 Aligned_cols=85 Identities=22% Similarity=0.355 Sum_probs=70.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|-..|+|++ |.+.+..++..+.||.+ +|.+++++++|++.+|.+.|..++|||+.+...++++.. .-+...+
T Consensus 269 GhsnGtVSl--WSP~skePLvKiLcH~g-----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~l 340 (545)
T KOG1272|consen 269 GHSNGTVSL--WSPNSKEPLVKILCHRG-----PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNL 340 (545)
T ss_pred cCCCceEEe--cCCCCcchHHHHHhcCC-----CcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccc
Confidence 556788887 88898999999999999 999999999999999999999999999998765655544 3567888
Q ss_pred EEccCCCEEEEEEc
Q 041215 82 TFNTDGSIFAYSVC 95 (136)
Q Consensus 82 ~~sp~~~~l~s~~~ 95 (136)
+||+.|- ||.+.+
T Consensus 341 s~Sqkgl-LA~~~G 353 (545)
T KOG1272|consen 341 SLSQKGL-LALSYG 353 (545)
T ss_pred ccccccc-eeeecC
Confidence 8988884 443433
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.65 E-value=1.3e-07 Score=74.96 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=80.2
Q ss_pred CCceeceEEEEEeeCCCCcceeEE-EeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
++|.+|.|.+ ||.....+++.+ ..|.. +...|+|+|.. .+|++.+.|..|.+||.........+ .-..|+
T Consensus 182 ~asd~G~Vtl--wDv~g~sp~~~~~~~HsA-----P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Pl 253 (673)
T KOG4378|consen 182 IASDKGAVTL--WDVQGMSPIFHASEAHSA-----PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPL 253 (673)
T ss_pred eeccCCeEEE--EeccCCCcccchhhhccC-----CcCcceecCCccceEEEecccceEEEeeccccccccee-eecCCc
Confidence 3678999988 888877777665 46888 99999999988 68999999999999999876655555 334789
Q ss_pred eEEEEccCCCEEEEEEcccccccccccCCC
Q 041215 79 PCSTFNTDGSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
..|+|+++|.+|+.|.+-+=...+++....
T Consensus 254 stvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ceeeecCCceEEEeecCCceEEEEecccCC
Confidence 999999999999998776655556666555
No 131
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.65 E-value=4e-08 Score=80.19 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=65.8
Q ss_pred EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCE
Q 041215 10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSI 89 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 89 (136)
+++||+..+....++++|+. .|.|++|+.+|..+++|+.|..|.+|+..-.. +-.+ .|.+.|.||.|+|-...
T Consensus 35 lliyD~ndG~llqtLKgHKD-----tVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~ 107 (1081)
T KOG1538|consen 35 LLVYDTSDGTLLQPLKGHKD-----TVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQ 107 (1081)
T ss_pred EEEEeCCCcccccccccccc-----eEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHH
Confidence 34599999999999999999 99999999999999999999999999865321 1122 56777788888877777
Q ss_pred EEEEEcccc
Q 041215 90 FAYSVCYDW 98 (136)
Q Consensus 90 l~s~~~dd~ 98 (136)
+++++-.||
T Consensus 108 LasCsLsdF 116 (1081)
T KOG1538|consen 108 LASCSLSDF 116 (1081)
T ss_pred hhhcchhhc
Confidence 777666554
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.64 E-value=2.2e-07 Score=76.39 Aligned_cols=83 Identities=12% Similarity=0.154 Sum_probs=72.6
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC--CCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS--DGAFNFWDKDSKQRLKAMSRCGQPIPCSTF 83 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 83 (136)
|.+. .+|+++..++.+.+..++. ++++++|+++|+++++|-. ...+++|++.....+.+|..|.-.|.|++|
T Consensus 57 GCvV-Vlfn~~~~tQ~hlvnssRk-----~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaF 130 (1080)
T KOG1408|consen 57 GCVV-VLFNVDSCTQSHLVNSSRK-----PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAF 130 (1080)
T ss_pred CcEE-EEEcccccchhheecccCc-----ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeee
Confidence 4443 3689988888899999999 9999999999999999874 467999999988889999999999999999
Q ss_pred ccCCCEEEEEE
Q 041215 84 NTDGSIFAYSV 94 (136)
Q Consensus 84 sp~~~~l~s~~ 94 (136)
+|.+.++++.+
T Consensus 131 sp~~kyvvSVG 141 (1080)
T KOG1408|consen 131 SPGNKYVVSVG 141 (1080)
T ss_pred cCCCcEEEeec
Confidence 99999998543
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.62 E-value=4.6e-08 Score=77.54 Aligned_cols=93 Identities=14% Similarity=0.226 Sum_probs=74.3
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
||..-.++.||.+-..+......+.+..- .+-+++.+||.+..+++..||.|.|||+.+...+.+|.+|.+-+.|
T Consensus 482 vGGeastlsiWDLAapTprikaeltssap-----aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc 556 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 556 (705)
T ss_pred eccccceeeeeeccCCCcchhhhcCCcch-----hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee
Confidence 34555677774443344444555554444 6677899999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEcccc
Q 041215 81 STFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~ 98 (136)
|.++++|.-|=||+-|..
T Consensus 557 Idis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 557 IDISKDGTKLWTGGLDNT 574 (705)
T ss_pred EEecCCCceeecCCCccc
Confidence 999999999998877764
No 134
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.7e-07 Score=74.44 Aligned_cols=73 Identities=16% Similarity=0.324 Sum_probs=61.6
Q ss_pred cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCC--EEEEEEcc
Q 041215 19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGS--IFAYSVCY 96 (136)
Q Consensus 19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~~~d 96 (136)
.+...+.+|.+ .|.+|+.+|.|.+|++|+.||+|++|.+.+|.++.++. ..+.|.||+|+|.+. +||.+-+.
T Consensus 391 ~~~lvyrGHtg-----~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 391 RCALVYRGHTG-----LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred eeeeeEeccCC-----eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 34567789999 99999999999999999999999999999999998773 446899999999875 56655444
Q ss_pred c
Q 041215 97 D 97 (136)
Q Consensus 97 d 97 (136)
.
T Consensus 465 ~ 465 (733)
T KOG0650|consen 465 C 465 (733)
T ss_pred c
Confidence 4
No 135
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=1.7e-07 Score=74.72 Aligned_cols=97 Identities=12% Similarity=0.136 Sum_probs=79.3
Q ss_pred CceeceEEEEEeeC------CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC------c----
Q 041215 2 GSIEGRVGVHHLDD------SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS------K---- 65 (136)
Q Consensus 2 gs~dG~v~i~~~d~------~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~------~---- 65 (136)
|+.||++.+|.+.. ...+++++|.+|.+ +|.|+++.+.+..+++|+-||.|++|++.. .
T Consensus 312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-----PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~ 386 (577)
T KOG0642|consen 312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-----PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS 386 (577)
T ss_pred eccccchhhhhhcccCCccccceeeeEEEecccC-----ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc
Confidence 67899999988832 23467899999999 999999999999999999999999996531 1
Q ss_pred ceeeecccCCCceeEEEEccCCCEEEEEEccccccccc
Q 041215 66 QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 66 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
.....+.+|.+.|..+++|+....|++++.|+...+..
T Consensus 387 vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 387 VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred hhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence 22346678999999999999998899998888665443
No 136
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.59 E-value=6.2e-07 Score=69.91 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=79.8
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
.||.|.+|.+ ||..++++..++..|.. .|.++.|||.. ..|++|+.|++|.+.|.+.-......-...+.|-
T Consensus 261 SgsaD~TV~l--WD~~~g~p~~s~~~~~k-----~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 261 SGSADKTVKL--WDVDTGKPKSSITHHGK-----KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ecCCCceEEE--EEcCCCCcceehhhcCC-----ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 4788999987 88899999999998888 99999999988 7999999999999999985222222223457899
Q ss_pred EEEEccCCC-EEEEEEcccccccccccCCC
Q 041215 80 CSTFNTDGS-IFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 80 ~v~~sp~~~-~l~s~~~dd~~~~~~~~~~~ 108 (136)
.+.|+|... .++++..|+....++.+.|.
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPG 363 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCC
Confidence 999999765 45555666677777777775
No 137
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.57 E-value=1.3e-06 Score=62.38 Aligned_cols=61 Identities=13% Similarity=0.314 Sum_probs=47.5
Q ss_pred ceeEEEEeCCCCEEEE--EcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215 35 SVNSLNFHPIHHTFAT--AGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s--~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
+|.+++|+|+|..|+. +..+..|.+||++ +..+..+. ...++.|.|+|+|+++++|+-.+.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~ 123 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNL 123 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCC
Confidence 7999999999976543 3456789999997 55555553 467899999999999999875543
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.55 E-value=8.8e-08 Score=73.23 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=73.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~ 80 (136)
|..|+.|.+ ||.+...++.... ..- .-+.|+|+|.+-.+++++.|..++.||+... ..+..+.+|.+.|.+
T Consensus 206 ~~sDrsIvL--yD~R~~~Pl~KVi-~~m-----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~d 277 (433)
T KOG0268|consen 206 CASDRSIVL--YDLRQASPLKKVI-LTM-----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMD 277 (433)
T ss_pred eccCCceEE--EecccCCccceee-eec-----cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEE
Confidence 445777766 9999888877654 233 5579999998888999999999999998763 457788899999999
Q ss_pred EEEccCCCEEEEEEcccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~ 100 (136)
|.|||.|+-+++|+-|--..
T Consensus 278 VdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 278 VDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred eccCCCcchhccccccceEE
Confidence 99999999999876554433
No 139
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.7e-06 Score=64.95 Aligned_cols=100 Identities=10% Similarity=0.085 Sum_probs=83.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC--CCcEEEEeCCCcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS--DGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
+|.|.++.+ ||..++++..++.+++- .|..++|......+..++. |..|++.++.+.+.+.-|.+|...|+
T Consensus 32 ss~dDsl~L--Yd~~~g~~~~ti~skky-----G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~ 104 (311)
T KOG1446|consen 32 SSEDDSLRL--YDSLSGKQVKTINSKKY-----GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN 104 (311)
T ss_pred ecCCCeEEE--EEcCCCceeeEeecccc-----cccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence 355667777 99999999999998887 8889999655565556665 78899999999999999999999999
Q ss_pred EEEEccCCCEEEEEEcccccccccccCCC
Q 041215 80 CSTFNTDGSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
+++.+|-+..+++++-|...+..+.+.++
T Consensus 105 sL~~sP~~d~FlS~S~D~tvrLWDlR~~~ 133 (311)
T KOG1446|consen 105 SLSVSPKDDTFLSSSLDKTVRLWDLRVKK 133 (311)
T ss_pred EEEecCCCCeEEecccCCeEEeeEecCCC
Confidence 99999999999999888766655555444
No 140
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.54 E-value=1.1e-06 Score=65.81 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=67.7
Q ss_pred CCceeceEEEEEeeCCCC---cceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc----------
Q 041215 1 VGSIEGRVGVHHLDDSQQ---SKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ---------- 66 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~---~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~---------- 66 (136)
+.|.|-+..| ||.+++ .....|-.|+. .|..++|...+ ..+++++.||.|++||++..+
T Consensus 168 tSSiDTTCTi--Wdie~~~~~~vkTQLIAHDK-----EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 168 TSSIDTTCTI--WDIETGVSGTVKTQLIAHDK-----EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred eecccCeEEE--EEEeeccccceeeEEEecCc-----ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 3578888888 555544 44777889999 99999999877 799999999999999975321
Q ss_pred --------------------------------------eeeecccCCCceeEEEEccCCC-EEEEEEccc
Q 041215 67 --------------------------------------RLKAMSRCGQPIPCSTFNTDGS-IFAYSVCYD 97 (136)
Q Consensus 67 --------------------------------------~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~dd 97 (136)
.+.++.+|.+.|+.|+|.|... .+++|+.|-
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 1123337999999999999765 666654444
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.53 E-value=1.6e-06 Score=63.68 Aligned_cols=86 Identities=9% Similarity=0.110 Sum_probs=64.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
++.||.+.+ ||..+++....+..+ . .+.+++|+|++..+ ++++.++.|.+||..+++....+..+. .+..
T Consensus 7 ~~~d~~v~~--~d~~t~~~~~~~~~~-~-----~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~ 77 (300)
T TIGR03866 7 NEKDNTISV--IDTATLEVTRTFPVG-Q-----RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPEL 77 (300)
T ss_pred ecCCCEEEE--EECCCCceEEEEECC-C-----CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccE
Confidence 456887877 777778877777654 3 45679999999765 677788999999999988777665543 3578
Q ss_pred EEEccCCCEEEEEEcc
Q 041215 81 STFNTDGSIFAYSVCY 96 (136)
Q Consensus 81 v~~sp~~~~l~s~~~d 96 (136)
++|+|+++.+++++.+
T Consensus 78 ~~~~~~g~~l~~~~~~ 93 (300)
T TIGR03866 78 FALHPNGKILYIANED 93 (300)
T ss_pred EEECCCCCEEEEEcCC
Confidence 8999999977655443
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.7e-06 Score=65.13 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=74.2
Q ss_pred CCceeceEEEEEeeCCC--CcceeEEEeeeCCCCccceeEEEE-eC-CCCEEEEEcCCCcEEEEeCCCc---------ce
Q 041215 1 VGSIEGRVGVHHLDDSQ--QSKNFTFKCHRDGSEIYSVNSLNF-HP-IHHTFATAGSDGAFNFWDKDSK---------QR 67 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~--~~~~~~l~~h~~~~~~~~v~~l~~-~p-~~~~l~s~~~dg~v~vwd~~~~---------~~ 67 (136)
.||.|+++.||.++..+ -.....+++|.+ .|..+.| || .|+.+++++.|+++.||.-... ..
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-----Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~ 104 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-----SIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR 104 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCC-----cEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE
Confidence 37889999996654332 345677899999 9999999 44 3489999999999999976311 11
Q ss_pred eeecccCCCceeEEEEccC--CCEEEEEEcccccccccc
Q 041215 68 LKAMSRCGQPIPCSTFNTD--GSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 68 ~~~~~~h~~~v~~v~~sp~--~~~l~s~~~dd~~~~~~~ 104 (136)
...+..-...|+.|.|.|. |-.+|+++.|++.+.++.
T Consensus 105 ~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 105 RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence 2345566789999999985 668898888887665544
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=1.8e-06 Score=67.64 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=76.3
Q ss_pred CCceeceEEEEEeeC-------CCCcceeEEEeeeCCCCccceeEEEEeCCC--CEEEEEcCCCcEEEEeCCCcceeeec
Q 041215 1 VGSIEGRVGVHHLDD-------SQQSKNFTFKCHRDGSEIYSVNSLNFHPIH--HTFATAGSDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 1 vgs~dG~v~i~~~d~-------~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~--~~l~s~~~dg~v~vwd~~~~~~~~~~ 71 (136)
.||.||.|.+|.+-. .+.++++.|..|.- +|+.+-..+.| ..|++++.|.++++||+..+..+-++
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-----sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-----SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeeccCcc-----eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 489999999987521 25688999999999 99998887765 68999999999999999999887666
Q ss_pred ccCCCceeEEEEccCCCEEEEEEccc
Q 041215 72 SRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 72 ~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
. ....+++|+.+|.++.+..|..++
T Consensus 215 ~-fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 215 T-FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred e-cCCcceeEEEcccccEEEecCCcc
Confidence 3 347899999999999888787766
No 144
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.48 E-value=2.7e-07 Score=75.19 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+|++|++|.+ |......++++|++|+. .|.+++...++. +++||.|.++++|.. +++...+.+|...|.+
T Consensus 76 ~g~~D~~i~v--~~~~~~~P~~~LkgH~s-----nVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 76 VGGMDTTIIV--FKLSQAEPLYTLKGHKS-----NVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred eecccceEEE--EecCCCCchhhhhcccc-----ceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence 4788999987 77778889999999999 888888776666 778888888888865 3445556777777777
Q ss_pred EEEccCCCEEEEEEcccc
Q 041215 81 STFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~ 98 (136)
+.+-|++ .++||+.|-.
T Consensus 146 v~~l~e~-~~vTgsaDKt 162 (745)
T KOG0301|consen 146 VASLPEN-TYVTGSADKT 162 (745)
T ss_pred eeecCCC-cEEeccCcce
Confidence 7776666 5566666543
No 145
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.47 E-value=1.9e-06 Score=66.00 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=67.2
Q ss_pred EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC--CCcEEEEeCCCcceeeecccCCCceeEEEEccCC
Q 041215 10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS--DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG 87 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 87 (136)
|++||.++-+.++++..-.. ....+.++++++.+.+|+--+. .|.|.+||+.+...+..+..|.+++-|++|+++|
T Consensus 108 IyIydI~~MklLhTI~t~~~--n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G 185 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPP--NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG 185 (391)
T ss_pred EEEEecccceeehhhhccCC--CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC
Confidence 45688888888888754311 1114667777776666665543 4889999999998899999999999999999999
Q ss_pred CEEEEEEcccc
Q 041215 88 SIFAYSVCYDW 98 (136)
Q Consensus 88 ~~l~s~~~dd~ 98 (136)
.++|||+.-+.
T Consensus 186 ~llATASeKGT 196 (391)
T KOG2110|consen 186 TLLATASEKGT 196 (391)
T ss_pred CEEEEeccCce
Confidence 99999977553
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.47 E-value=2.5e-07 Score=71.43 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=76.5
Q ss_pred CceeceEEEEEee------CCC--------CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce
Q 041215 2 GSIEGRVGVHHLD------DSQ--------QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR 67 (136)
Q Consensus 2 gs~dG~v~i~~~d------~~~--------~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~ 67 (136)
|+.+|.+-+|.-. .++ ......+.+|+. .|-.++|+|++.++++++-|..+++||+..|+.
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-----diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-----DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc-----chhhhhccCCCceeeeeeccceEEEEEecccee
Confidence 6778888886654 112 223455667777 999999999999999999999999999999999
Q ss_pred eeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 68 LKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 68 ~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
+..+.+|..-|+-++|.|..+++++-+.|-
T Consensus 158 ~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred EeeccccccccceeecchhhhhhhhhccCc
Confidence 999999999999999999999999877666
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.46 E-value=1.2e-06 Score=65.78 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=72.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC---CEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH---HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
+|-|.++.+ ||..+.+....|+ ..+ .|-.-+++|.. .++++|..+..|++.|+.+|...+.+++|.+.|
T Consensus 120 sSFDhtlKV--WDtnTlQ~a~~F~-me~-----~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 120 SSFDHTLKV--WDTNTLQEAVDFK-MEG-----KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred ccccceEEE--eecccceeeEEee-cCc-----eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 567888877 8888888888887 455 66666777766 367777777889999999999999999999999
Q ss_pred eEEEEccCCCE-EEEEEcccccc
Q 041215 79 PCSTFNTDGSI-FAYSVCYDWSK 100 (136)
Q Consensus 79 ~~v~~sp~~~~-l~s~~~dd~~~ 100 (136)
.+|.|+|...+ |++|+.|.-.+
T Consensus 192 laV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred EEEEeccCceeEEEecCCCceEE
Confidence 99999998875 56666666443
No 148
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=2.7e-07 Score=72.20 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=60.7
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
+|.++.-+|.|.+|+.+.-.+.|++|.+.+|..+..+.+|-..|+|+.|+-|+.+++||+.|.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence 799999999999999999999999999999999999999999999999999999999998887
No 149
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=9e-07 Score=66.32 Aligned_cols=84 Identities=20% Similarity=0.323 Sum_probs=66.6
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
|+|+||.+++ ||.........++ |.. ++.+++|.++ ..+++|+.||.|+.+|+.++.. .++-.|..+|+|
T Consensus 30 vssWDgslrl--Ydv~~~~l~~~~~-~~~-----plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~c 99 (323)
T KOG1036|consen 30 VSSWDGSLRL--YDVPANSLKLKFK-HGA-----PLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRC 99 (323)
T ss_pred EEeccCcEEE--Eeccchhhhhhee-cCC-----ceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEE
Confidence 5789999999 6655554444444 777 9999999974 6688999999999999998764 456689999999
Q ss_pred EEEccCCCEEEEEE
Q 041215 81 STFNTDGSIFAYSV 94 (136)
Q Consensus 81 v~~sp~~~~l~s~~ 94 (136)
|.+++....+++|+
T Consensus 100 i~~~~~~~~vIsgs 113 (323)
T KOG1036|consen 100 IEYSYEVGCVISGS 113 (323)
T ss_pred EEeeccCCeEEEcc
Confidence 99998776677553
No 150
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.45 E-value=1.1e-06 Score=71.40 Aligned_cols=95 Identities=13% Similarity=0.230 Sum_probs=74.5
Q ss_pred CceeceEEEEEeeCCCCcc--eeEE---EeeeC-CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC
Q 041215 2 GSIEGRVGVHHLDDSQQSK--NFTF---KCHRD-GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG 75 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~--~~~l---~~h~~-~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~ 75 (136)
|+-|+.|-+ ||..++.. ..++ ..... ..+..+|-+++.++.|..+++|+..+.+++||..+++.+-.+.+|.
T Consensus 136 gGLD~~Ifl--WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT 213 (735)
T KOG0308|consen 136 GGLDRKIFL--WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT 213 (735)
T ss_pred cCCCccEEE--EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc
Confidence 677888887 55554422 2221 11111 1334489999999999999999999999999999998888889999
Q ss_pred CceeEEEEccCCCEEEEEEcccc
Q 041215 76 QPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
+.|.++..+.+|+.++++++|..
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGT 236 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCce
Confidence 99999999999999999999883
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=1.6e-06 Score=68.03 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=66.2
Q ss_pred EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC-ceeEEEEccCCCE
Q 041215 11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ-PIPCSTFNTDGSI 89 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~ 89 (136)
+++-+.++..+.+++ ..+ .|..++|+.++..|..++.+|.|.+||+....+++.+...++ .-+++|.++++.+
T Consensus 328 ~lLhakT~eli~s~K-ieG-----~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y 401 (514)
T KOG2055|consen 328 HLLHAKTKELITSFK-IEG-----VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY 401 (514)
T ss_pred Eeehhhhhhhhheee-ecc-----EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce
Confidence 336667788888876 456 899999999999888888999999999999988888865532 2267888999999
Q ss_pred EEEEEcccc
Q 041215 90 FAYSVCYDW 98 (136)
Q Consensus 90 l~s~~~dd~ 98 (136)
||+|+..+.
T Consensus 402 lA~GS~~Gi 410 (514)
T KOG2055|consen 402 LATGSDSGI 410 (514)
T ss_pred EEeccCcce
Confidence 999977543
No 152
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.43 E-value=2.5e-07 Score=70.84 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=68.4
Q ss_pred CceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCcee
Q 041215 2 GSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~ 79 (136)
|+.|-++ +.||.+. ..++..+++|.+ +|..++|+|.|..+++||.|.+|+||.+..+..--.+.. --..|.
T Consensus 247 a~ED~nl--Y~~DmR~l~~p~~v~~dhvs-----AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~ 319 (433)
T KOG0268|consen 247 ANEDHNL--YTYDMRNLSRPLNVHKDHVS-----AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF 319 (433)
T ss_pred ccccccc--eehhhhhhcccchhhcccce-----eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheee
Confidence 4444444 5688864 567788889999 999999999999999999999999999876543211111 136789
Q ss_pred EEEEccCCCEEEEEEccccc
Q 041215 80 CSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~ 99 (136)
||.||.|.+++++|+ ||..
T Consensus 320 ~Vk~S~Dskyi~SGS-dd~n 338 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGS-DDGN 338 (433)
T ss_pred EEEEeccccEEEecC-CCcc
Confidence 999999999999764 4443
No 153
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.43 E-value=1.2e-06 Score=68.63 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=57.6
Q ss_pred CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 32 EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 32 ~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
|+..+.+++.++++.+|++++.|..|.||+.++++.++.+.+|.+.|.+++|-.....+.+++.|-
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC
Confidence 444899999999999999999999999999999999999999999999999977666666555543
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=4.9e-07 Score=68.41 Aligned_cols=40 Identities=28% Similarity=0.544 Sum_probs=36.4
Q ss_pred cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC
Q 041215 19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD 63 (136)
Q Consensus 19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~ 63 (136)
...+.|++|++ .|..++|++++...++++.||..++||.+
T Consensus 269 ~rvf~LkGH~s-----aV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 269 KRVFSLKGHQS-----AVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred hhhheeccchh-----heeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 34678899999 99999999999999999999999999864
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=2.7e-06 Score=71.28 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=75.8
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+||.+++|..+-+ ..+..-..+.-..- ++.+++++-+|.+++.|++|-.|++-++.+......+.+|.++|.+
T Consensus 71 ~~s~~~tv~~y~f--ps~~~~~iL~Rftl-----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 71 TGSEQNTVLRYKF--PSGEEDTILARFTL-----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred EeeccceEEEeeC--CCCCccceeeeeec-----cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 4678888888555 44444434444455 8999999999999999999999999999998888999999999999
Q ss_pred EEEccCCCEEEEEEcccc
Q 041215 81 STFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~ 98 (136)
+.|+|.+.+||+++.|+-
T Consensus 144 l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred eeEcCCCCEEEEEecCce
Confidence 999999999999888773
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.39 E-value=9.8e-07 Score=72.08 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=70.0
Q ss_pred EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce----eeecccCCCceeEEEEcc
Q 041215 10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR----LKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~----~~~~~~h~~~v~~v~~sp 85 (136)
|++|+..+-.+...+..|.- .|+.+.|+|++++|++++.|.++.+|....... ......|..-|-.+.|+|
T Consensus 554 I~lw~t~~W~~~~~L~~HsL-----TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p 628 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSL-----TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP 628 (764)
T ss_pred EEEEeccchhhhheecccce-----EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc
Confidence 45677777777778899999 999999999999999999999999998754321 223567888999999999
Q ss_pred CCCEEEEEEcccc
Q 041215 86 DGSIFAYSVCYDW 98 (136)
Q Consensus 86 ~~~~l~s~~~dd~ 98 (136)
++.+++|++-|-.
T Consensus 629 de~~FaTaSRDK~ 641 (764)
T KOG1063|consen 629 DEKYFATASRDKK 641 (764)
T ss_pred ccceeEEecCCce
Confidence 9999999988753
No 157
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.39 E-value=2.5e-06 Score=68.38 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=69.1
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
+...+.+|+......+..+++... .+..++++||+..|++++ +.|.+||+++++.+..|.+|.++|++++|..
T Consensus 122 ad~~v~~~~~~~~~~~~~~~~~~~-----~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 122 ADLKVVYILEKEKVIIRIWKEQKP-----LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT 194 (541)
T ss_pred CceeEEEEecccceeeeeeccCCC-----ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE
Confidence 334445577788888999998888 899999999999998887 7899999999999999999999999999987
Q ss_pred C-----CCEEEEE
Q 041215 86 D-----GSIFAYS 93 (136)
Q Consensus 86 ~-----~~~l~s~ 93 (136)
. |.+++++
T Consensus 195 ~~~g~~G~~vLss 207 (541)
T KOG4547|consen 195 LIDGIIGKYVLSS 207 (541)
T ss_pred eccccccceeeec
Confidence 7 6666643
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.38 E-value=7.6e-06 Score=60.75 Aligned_cols=87 Identities=28% Similarity=0.463 Sum_probs=71.0
Q ss_pred eeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 4 IEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 4 ~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
.|+.+.+ ||... ......+..|.. .|..++|+|++..++.++. ++.+++|+...+..+..+..|...|.++
T Consensus 132 ~d~~~~~--~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 132 LDGTVKL--WDLSTPGKLIRTLEGHSE-----SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred CCccEEE--EEecCCCeEEEEEecCcc-----cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 3666666 66665 677778888888 9999999999998888886 9999999999888888888899999999
Q ss_pred EEccCCC-EEEEEEccc
Q 041215 82 TFNTDGS-IFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~-~l~s~~~dd 97 (136)
+|+|++. ++++++.|.
T Consensus 205 ~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 205 AFSPDGGLLIASGSSDG 221 (466)
T ss_pred EEcCCcceEEEEecCCC
Confidence 9999998 444424443
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.37 E-value=6.4e-06 Score=60.48 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=61.3
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEE-EcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFAT-AGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
+.++.+.+ ||..+++....+..+. .+..++|+|+++.++. ++.++.|.+||+.+...+..+.. ...+.++
T Consensus 50 ~~~~~v~~--~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~ 120 (300)
T TIGR03866 50 SDSDTIQV--IDLATGEVIGTLPSGP------DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGM 120 (300)
T ss_pred CCCCeEEE--EECCCCcEEEeccCCC------CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceE
Confidence 34566655 7777776666655433 3467899999986654 45688999999998777666643 3456889
Q ss_pred EEccCCCEEEEEEcc
Q 041215 82 TFNTDGSIFAYSVCY 96 (136)
Q Consensus 82 ~~sp~~~~l~s~~~d 96 (136)
+|+|++.+++++..+
T Consensus 121 ~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 121 AVSPDGKIVVNTSET 135 (300)
T ss_pred EECCCCCEEEEEecC
Confidence 999999998877654
No 160
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.36 E-value=5e-06 Score=66.16 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=67.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecc-cCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMS-RCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~-~h~~~v~ 79 (136)
|+..|.--+ +|.++...+..-.+ .. ++++++|+|+|.+|+.|+.|+.|++|.+... ....... .+.++|+
T Consensus 424 Gt~~G~w~V--~d~e~~~lv~~~~d-~~-----~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 424 GTATGRWFV--LDTETQDLVTIHTD-NE-----QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred eeccceEEE--EecccceeEEEEec-CC-----ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 445555444 66666333333333 56 9999999999999999999999999998754 3333332 2348999
Q ss_pred EEEEccCCCEEEEEEccccccccc
Q 041215 80 CSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
.+.||+|++++.+ -+-||..+++
T Consensus 496 hLDwS~Ds~~~~~-~S~d~eiLyW 518 (626)
T KOG2106|consen 496 HLDWSSDSQFLVS-NSGDYEILYW 518 (626)
T ss_pred EeeecCCCceEEe-ccCceEEEEE
Confidence 9999999999986 4556766666
No 161
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.36 E-value=4.7e-06 Score=66.29 Aligned_cols=87 Identities=14% Similarity=0.256 Sum_probs=68.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
++.|+.+++|. ..+...+.. ... ++.|+.|||.| .++.|...|...+.|.++...+..-.. ..++++|
T Consensus 386 ~gqdk~v~lW~----~~k~~wt~~-~~d-----~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v 453 (626)
T KOG2106|consen 386 CGQDKHVRLWN----DHKLEWTKI-IED-----PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVV 453 (626)
T ss_pred ccCcceEEEcc----CCceeEEEE-ecC-----ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEE
Confidence 56788888844 344555532 344 88999999999 899999999999999998655544444 8999999
Q ss_pred EEccCCCEEEEEEcccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~ 100 (136)
+|+|+|.+||.|+.|...-
T Consensus 454 ~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred EEcCCCCEEEEecCCCeEE
Confidence 9999999999999988653
No 162
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=1.9e-06 Score=65.34 Aligned_cols=88 Identities=10% Similarity=0.128 Sum_probs=70.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC---Cc-----ceeeeccc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD---SK-----QRLKAMSR 73 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~---~~-----~~~~~~~~ 73 (136)
+|.|-.|.+ |+.+ ++.+.++..... .-...+.+|+|+++++++...-|++|..- +| ..+.++.+
T Consensus 205 as~dt~i~l--w~lk-Gq~L~~idtnq~-----~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 205 ASLDTKICL--WDLK-GQLLQSIDTNQS-----SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred ecCCCcEEE--EecC-Cceeeeeccccc-----cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 566777777 5556 667777666665 56678999999999999999999999842 23 23467889
Q ss_pred CCCceeEEEEccCCCEEEEEEccc
Q 041215 74 CGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 74 h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
|.+.|+..+||++.+..++.+.|+
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCC
Confidence 999999999999999999999887
No 163
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.35 E-value=6.3e-07 Score=71.73 Aligned_cols=84 Identities=19% Similarity=0.389 Sum_probs=67.0
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
++|.||.+.| +. +.+........|.+ ++.+-+|+|+|.-|++++.||.|++|. .+|+.-.++.....+|.|
T Consensus 80 i~s~DGkf~i--l~-k~~rVE~sv~AH~~-----A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 80 ICSNDGRFVI--LN-KSARVERSISAHAA-----AISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred EEcCCceEEE--ec-ccchhhhhhhhhhh-----hhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 3578888876 42 34555566678888 999999999999999999999999996 566665666666789999
Q ss_pred EEEccCCCEEEEE
Q 041215 81 STFNTDGSIFAYS 93 (136)
Q Consensus 81 v~~sp~~~~l~s~ 93 (136)
++|.|+..-++.+
T Consensus 151 ~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 151 ARWAPNSNSIVFC 163 (737)
T ss_pred EEECCCCCceEEe
Confidence 9999998766655
No 164
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=3.5e-06 Score=68.63 Aligned_cols=94 Identities=19% Similarity=0.147 Sum_probs=73.1
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEee-eCCC--CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCH-RDGS--EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP 77 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h-~~~~--~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 77 (136)
.||.||.|++ ||..++...+..... .... ...-|+++.|-.+ ..+++|.+.|.|.+||...+..++.+..|.+.
T Consensus 171 ~Gs~Dg~Iri--wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad 247 (691)
T KOG2048|consen 171 GGSIDGVIRI--WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDAD 247 (691)
T ss_pred ecccCceEEE--EEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcc
Confidence 3899999999 888887777632211 1111 2224677777644 67889999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEEccc
Q 041215 78 IPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd 97 (136)
|.|++.++++..+.+++-|.
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred eeEEEEcCCCCeEEEccCCC
Confidence 99999999998888876665
No 165
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.34 E-value=9e-07 Score=67.10 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=68.6
Q ss_pred ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215 20 KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 20 ~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
++..|.+|.+ .|.++.|...|..+++++.|.+-.+||+++++.++.+.+|...++.++-+|.++++++++.|..
T Consensus 264 Pl~~ltgH~~-----vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT 337 (481)
T KOG0300|consen 264 PLMRLTGHRA-----VVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT 337 (481)
T ss_pred eeeeeecccc-----ceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce
Confidence 5677888999 9999999999999999999999999999999999999999999999999999999999887664
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.33 E-value=2.4e-06 Score=64.76 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=40.3
Q ss_pred eCCCCEEEEEcCCCcEEEEeCCC-cceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 42 HPIHHTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 42 ~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.|.+++|++|+.||.|++||+.+ +..+..+..+...|+.|+++|--.++|++++
T Consensus 306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 34444466666777788888776 5556667778888999999999889998766
No 167
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.8e-06 Score=66.75 Aligned_cols=56 Identities=21% Similarity=0.401 Sum_probs=45.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK 65 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~ 65 (136)
|..||.+++|.| ........+..|.. .|.++.|+|||.+|++.+.| ..++|++.++
T Consensus 162 gg~dg~lRv~~~--Ps~~t~l~e~~~~~-----eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 162 GGTDGTLRVWEW--PSMLTILEEIAHHA-----EVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred ccccceEEEEec--CcchhhhhhHhhcC-----ccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 567999999554 44444445566888 99999999999999999999 8999999887
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.32 E-value=2.6e-06 Score=69.59 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=75.8
Q ss_pred CCceeceEEEEEeeCCCCc----ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215 1 VGSIEGRVGVHHLDDSQQS----KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ 76 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~----~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 76 (136)
.||.|-.|.||.+-....+ +...+..... .|.++.|||...-|+..+..|.+.+||+.+++.+.++.+|.+
T Consensus 97 T~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~-----~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d 171 (1012)
T KOG1445|consen 97 TCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNV-----IVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTD 171 (1012)
T ss_pred cccCCCeeEEEecCCCcccccCCcceeecCCce-----EEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCch
Confidence 3788999999777521111 1223332333 789999999986666666778999999999999999999999
Q ss_pred ceeEEEEccCCCEEEEEEccccccccc
Q 041215 77 PIPCSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
.|.++.|+.||.++++++.|-....|+
T Consensus 172 ~vQSa~WseDG~llatscKdkqirifD 198 (1012)
T KOG1445|consen 172 KVQSADWSEDGKLLATSCKDKQIRIFD 198 (1012)
T ss_pred hhhccccccCCceEeeecCCcceEEeC
Confidence 999999999999999998877665553
No 169
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.31 E-value=2.9e-07 Score=71.33 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=77.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|..|-.|.+|...........+|.+..+ +|+.+.|.+++..+.+++.|+.+++|++......+++++|.+.|+++
T Consensus 193 gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g-----~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a 267 (459)
T KOG0288|consen 193 GGSDRIIKLWNVLGEKSELISTLAGSLG-----NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA 267 (459)
T ss_pred cchhhhhhhhhcccchhhhhhhhhccCC-----CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence 4556777774443344446677777778 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKG 101 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~ 101 (136)
.|......+++|+.|-..+.
T Consensus 268 k~~~~~~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 268 KFKLSHSRVVSGSADRTIKL 287 (459)
T ss_pred hhhccccceeeccccchhhh
Confidence 99988777888777654443
No 170
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=1.4e-06 Score=69.90 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=67.7
Q ss_pred eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-ccCCCceeEEEEccC--CCEEEEEEccc
Q 041215 21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPIPCSTFNTD--GSIFAYSVCYD 97 (136)
Q Consensus 21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~--~~~l~s~~~dd 97 (136)
...|.+|.+ =|+|+.|+.+|.+|++|++|-.+.|||....+.++.+ .+|.+.|.|+-|-|. .+++++|.+|-
T Consensus 43 E~eL~GH~G-----CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 43 EAELTGHTG-----CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhhccccc-----eecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 356788999 9999999999999999999999999999887777766 579999999999984 56899998887
Q ss_pred cccccccc
Q 041215 98 WSKGAENH 105 (136)
Q Consensus 98 ~~~~~~~~ 105 (136)
..+.|+-.
T Consensus 118 ~i~lfdl~ 125 (758)
T KOG1310|consen 118 LIKLFDLD 125 (758)
T ss_pred eEEEEecc
Confidence 66655443
No 171
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.3e-06 Score=67.55 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=55.2
Q ss_pred eEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 37 NSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 37 ~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+++|+++|..+++++.||++++|+..+...+-....|.+.|.++.|+||+.+|++-+.+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~ 208 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADS 208 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCc
Confidence 4799999999999999999999999888777777889999999999999999999877663
No 172
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.28 E-value=2.4e-06 Score=67.00 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=68.3
Q ss_pred eeCCCCc-ceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCccee----eecccCCCceeEEEEccC
Q 041215 13 LDDSQQS-KNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRL----KAMSRCGQPIPCSTFNTD 86 (136)
Q Consensus 13 ~d~~~~~-~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~----~~~~~h~~~v~~v~~sp~ 86 (136)
||.+++. ....+..|.. .|..++++|.. .+|++++.|++.+|||++..... -....|...|+++.|||+
T Consensus 306 iD~R~~~s~~~~~~lh~k-----KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs 380 (498)
T KOG4328|consen 306 IDLRTDGSEYENLRLHKK-----KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS 380 (498)
T ss_pred EEeecCCccchhhhhhhc-----ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC
Confidence 6666543 4666777888 99999999998 68999999999999998753221 223378999999999998
Q ss_pred CCEEEEEEcccccccccc
Q 041215 87 GSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 87 ~~~l~s~~~dd~~~~~~~ 104 (136)
+-.|+|-+-|+....++.
T Consensus 381 ~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 381 GGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred CCceEeeccCCceEEeec
Confidence 877888888887766655
No 173
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.26 E-value=4.3e-06 Score=67.10 Aligned_cols=61 Identities=25% Similarity=0.395 Sum_probs=48.0
Q ss_pred ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC
Q 041215 20 KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD 86 (136)
Q Consensus 20 ~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~ 86 (136)
....++.|++ -|.+++|++.+.++++|+.|-..++||.. |..+++-..|.-+|++|+|+|+
T Consensus 178 k~i~WkAHDG-----iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 178 KIIRWRAHDG-----LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred ceeEEeccCc-----EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence 3456788999 99999999999999999999999999976 3445555556666666666666
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=4.6e-06 Score=63.45 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=45.8
Q ss_pred CCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc---eeeecccCCCceeEEEEccCC
Q 041215 30 GSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ---RLKAMSRCGQPIPCSTFNTDG 87 (136)
Q Consensus 30 ~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~---~~~~~~~h~~~v~~v~~sp~~ 87 (136)
..|.+.|++++|||.. ++|++|+.||.|.+||+..-. .+...-.|...|.++.|.-.+
T Consensus 162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 4566799999999998 799999999999999986431 222333567889999998777
No 175
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.24 E-value=3.1e-06 Score=63.94 Aligned_cols=102 Identities=21% Similarity=0.223 Sum_probs=75.2
Q ss_pred CCceeceEEEEEeeCCCCc-c-eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC--------------
Q 041215 1 VGSIEGRVGVHHLDDSQQS-K-NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-------------- 64 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~-~-~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-------------- 64 (136)
|||-...|.+++|+-++.+ . .++=+.+++ .|.+++|||+.-+|++|+.|+..++|...-
T Consensus 117 VgSgar~isVcy~E~ENdWWVsKhikkPirS-----tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgs 191 (361)
T KOG1523|consen 117 VGSGARLISVCYYEQENDWWVSKHIKKPIRS-----TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS 191 (361)
T ss_pred eccCccEEEEEEEecccceehhhhhCCcccc-----ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCcc
Confidence 5777788999999876543 2 223345677 999999999999999999999999986421
Q ss_pred ----cceeeecccCCCceeEEEEccCCCEEEEEEcccccccccccCC
Q 041215 65 ----KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNP 107 (136)
Q Consensus 65 ----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~ 107 (136)
|..+.++....+.++.+.|+|+|..|+..+.|......+.+-|
T Consensus 192 k~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 192 KMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred CCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 1233445455689999999999999999888775443433333
No 176
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=8.6e-06 Score=62.85 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=78.9
Q ss_pred eceEEEEEeeCCCC-cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee-cccCCCceeEEE
Q 041215 5 EGRVGVHHLDDSQQ-SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA-MSRCGQPIPCST 82 (136)
Q Consensus 5 dG~v~i~~~d~~~~-~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~h~~~v~~v~ 82 (136)
-+.+++ ||.+.+ .+...|.-... +++++.+.|+++++.++...+.+..||...+..+.. +.+..+.+++|.
T Consensus 225 ~hqvR~--YDt~~qRRPV~~fd~~E~-----~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih 297 (412)
T KOG3881|consen 225 YHQVRL--YDTRHQRRPVAQFDFLEN-----PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH 297 (412)
T ss_pred ceeEEE--ecCcccCcceeEeccccC-----cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEE
Confidence 345555 777643 45555555566 899999999999999999999999999999887765 788899999999
Q ss_pred EccCCCEEEEEEcccccccccccC
Q 041215 83 FNTDGSIFAYSVCYDWSKGAENHN 106 (136)
Q Consensus 83 ~sp~~~~l~s~~~dd~~~~~~~~~ 106 (136)
.+|.++++++++-|-|.+.++..+
T Consensus 298 ~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 298 CHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EcCCCceEEeeccceeEEEeeccc
Confidence 999999999999999988777664
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.22 E-value=1.1e-05 Score=62.56 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=67.6
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-CceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-QPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~ 80 (136)
++.|-+|.+ |+..+++...++. |.. -|..++|+-+|.+|++.+.|..|++||..++..+.+-.+|. ..-..
T Consensus 150 ag~Dn~v~i--Wnv~tgeali~l~-hpd-----~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 150 AGSDNTVSI--WNVGTGEALITLD-HPD-----MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR 221 (472)
T ss_pred ccCCceEEE--EeccCCceeeecC-CCC-----eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence 456777877 7788999998887 888 99999999999999999999999999999999988887774 34455
Q ss_pred EEEccCCCEEEE
Q 041215 81 STFNTDGSIFAY 92 (136)
Q Consensus 81 v~~sp~~~~l~s 92 (136)
+-|-.++.++.|
T Consensus 222 aifl~~g~i~tT 233 (472)
T KOG0303|consen 222 AIFLASGKIFTT 233 (472)
T ss_pred eEEeccCceeee
Confidence 566666664443
No 178
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=1.1e-05 Score=67.18 Aligned_cols=91 Identities=21% Similarity=0.371 Sum_probs=73.3
Q ss_pred CceeceEEEEEeeC--CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDD--SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~--~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
|..||.|.+|.--. ........|+=|.. .|.+++|+++|.+|.+|+..+.+-+|.+.++. .+-++.-+++|.
T Consensus 223 ~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-----~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~ 296 (792)
T KOG1963|consen 223 GDSDGRILVWRDFGSSDDSETCTLLHWHHD-----EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPIL 296 (792)
T ss_pred eccCCcEEEEeccccccccccceEEEeccc-----ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeE
Confidence 56789988854222 12234455666778 99999999999999999999999999999987 455667789999
Q ss_pred EEEEccCCCEEEEEEcccc
Q 041215 80 CSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~ 98 (136)
.+.++||+.+.+....|.-
T Consensus 297 ~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 297 HIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred EEEEcCCCCeEEEEecCce
Confidence 9999999999888877763
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.22 E-value=8.2e-06 Score=61.19 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=74.7
Q ss_pred CceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc--------------
Q 041215 2 GSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK-------------- 65 (136)
Q Consensus 2 gs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~-------------- 65 (136)
|..||-|+| ||.+ +..+...+.+|.- -|++++|+|.. +++.+++.|..|.+|...+-
T Consensus 233 ~gDdgyvri--WD~R~tk~pv~el~~HsH-----WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese 305 (370)
T KOG1007|consen 233 CGDDGYVRI--WDTRKTKFPVQELPGHSH-----WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE 305 (370)
T ss_pred cCCCccEEE--EeccCCCccccccCCCce-----EEEEEEecCccceEEEecCCCceeEEEecccccccccccccccccc
Confidence 567888988 8876 4567888999999 99999999988 79999999999999964211
Q ss_pred ---------------ceeeecccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215 66 ---------------QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 66 ---------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
..+.++..|.+.|.+++||.-..++..+-+||-....
T Consensus 306 ~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 306 SEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 1134566789999999999988888778888865433
No 180
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.22 E-value=2.4e-05 Score=61.06 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=62.5
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF 83 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 83 (136)
.+|.+.+ +|..+.+....+..... .-..+.++||+++++.++.|+.|.++|+.+++.+.++... ....++++
T Consensus 14 ~~~~v~v--iD~~t~~~~~~i~~~~~-----~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~ 85 (369)
T PF02239_consen 14 GSGSVAV--IDGATNKVVARIPTGGA-----PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAV 85 (369)
T ss_dssp GGTEEEE--EETTT-SEEEEEE-STT-----EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE
T ss_pred CCCEEEE--EECCCCeEEEEEcCCCC-----ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEE
Confidence 3567766 89998898888876544 4345778999998888899999999999999998888655 45688999
Q ss_pred ccCCCEEEEEEc
Q 041215 84 NTDGSIFAYSVC 95 (136)
Q Consensus 84 sp~~~~l~s~~~ 95 (136)
|++|++++++..
T Consensus 86 s~DG~~~~v~n~ 97 (369)
T PF02239_consen 86 SPDGKYVYVANY 97 (369)
T ss_dssp --TTTEEEEEEE
T ss_pred cCCCCEEEEEec
Confidence 999999987754
No 181
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=2e-05 Score=64.37 Aligned_cols=91 Identities=11% Similarity=0.130 Sum_probs=74.5
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee--ecccCCCceeEEE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK--AMSRCGQPIPCST 82 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~h~~~v~~v~ 82 (136)
+....|..||.-+.++++.+.+..+ +|+.++.+|.+..++.++.||.+..++...+...+ .+....+.|.++.
T Consensus 87 g~sg~i~EwDl~~lk~~~~~d~~gg-----~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNIDSNGG-----AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS 161 (691)
T ss_pred cCCceEEEEecccCceeEEecCCCc-----ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence 3334445599999999999999999 99999999999999999999988888887776544 3444568999999
Q ss_pred EccCCCEEEEEEcccccc
Q 041215 83 FNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 83 ~sp~~~~l~s~~~dd~~~ 100 (136)
|+|++..+++|+.|.-.+
T Consensus 162 w~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred ecCCccEEEecccCceEE
Confidence 999999999888877333
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=1.2e-05 Score=59.05 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=63.9
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc---------C-C
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR---------C-G 75 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~---------h-~ 75 (136)
|...++.+|.++++....+++|.. =|.++..-.....+++|+.||++++||..+++.+..+.. | .
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHtD-----YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHTD-----YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCcc-----eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence 455567799999999999999999 899988855556688999999999999999888765532 1 2
Q ss_pred CceeEEEEccCCCEEEEEEccc
Q 041215 76 QPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+|-+++- +..+++.|++-.
T Consensus 209 ~wigala~--~edWlvCGgGp~ 228 (325)
T KOG0649|consen 209 KWIGALAV--NEDWLVCGGGPK 228 (325)
T ss_pred ceeEEEec--cCceEEecCCCc
Confidence 44555554 555666665544
No 183
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=1.2e-05 Score=63.29 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=79.5
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCccee--eecccCC-C
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRL--KAMSRCG-Q 76 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~--~~~~~h~-~ 76 (136)
||..||+++|+..|-+.+..+..+.-.+. +|.+++|+|+|+ .+++++....++.||+.+.+.. ..+.++. .
T Consensus 230 vaG~d~~lrifqvDGk~N~~lqS~~l~~f-----Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~ 304 (514)
T KOG2055|consen 230 VAGLDGTLRIFQVDGKVNPKLQSIHLEKF-----PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK 304 (514)
T ss_pred EecCCCcEEEEEecCccChhheeeeeccC-----ccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccc
Confidence 57889999998888888777777665566 999999999997 8999999999999999887543 3344443 4
Q ss_pred ceeEEEEccCCCEEEEEEccccccccccc
Q 041215 77 PIPCSTFNTDGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~dd~~~~~~~~ 105 (136)
.+.....+|++.+++.++..+|.-++..+
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhak 333 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAK 333 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhh
Confidence 56777889999999999998886555443
No 184
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=1.6e-05 Score=60.03 Aligned_cols=88 Identities=15% Similarity=0.244 Sum_probs=67.0
Q ss_pred ceEEEEEeeCCC--CcceeEEEeeeCCCCccceeEEEEeCCC----CEEEEEcCCCcEEEEeCCCc--------------
Q 041215 6 GRVGVHHLDDSQ--QSKNFTFKCHRDGSEIYSVNSLNFHPIH----HTFATAGSDGAFNFWDKDSK-------------- 65 (136)
Q Consensus 6 G~v~i~~~d~~~--~~~~~~l~~h~~~~~~~~v~~l~~~p~~----~~l~s~~~dg~v~vwd~~~~-------------- 65 (136)
+.+.||.++... -.....+.+|.. +|..++|.|+- +.|++++.|| |+||.+...
T Consensus 199 ~~~~Iye~~e~~rKw~kva~L~d~~d-----pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~ 272 (361)
T KOG2445|consen 199 NKVKIYEYNENGRKWLKVAELPDHTD-----PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDL 272 (361)
T ss_pred cceEEEEecCCcceeeeehhcCCCCC-----cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCC
Confidence 356666665543 234455667777 99999999986 5799999999 999987621
Q ss_pred ------ceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 66 ------QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 66 ------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
+.+.++.+|.++|-.++|+-.|..|++.+.|+-.
T Consensus 273 ~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 273 MTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred ccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 2346677899999999999999999987777743
No 185
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.15 E-value=6.9e-06 Score=67.26 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCCccceeEEEEeCCCCEEEEEcCC-----CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215 30 GSEIYSVNSLNFHPIHHTFATAGSD-----GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 30 ~~~~~~v~~l~~~p~~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
..|.|.|.+++.+|++++++++... ..|++|+..+-..++.+.+|+=.|+.++||||+++|++.+.|-.-..+..
T Consensus 522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 4566699999999999999999865 35999999988888889999999999999999999999998875544433
No 186
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.15 E-value=3.2e-06 Score=68.64 Aligned_cols=91 Identities=12% Similarity=0.179 Sum_probs=72.7
Q ss_pred CceeceEEEEEeeCCCC------cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee--ccc
Q 041215 2 GSIEGRVGVHHLDDSQQ------SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA--MSR 73 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~------~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~ 73 (136)
+-.||.|.+ ||.+.. .+++.+.+|.+ .|..+.|-|-...|++++-|.++++||+....+... +-+
T Consensus 70 adE~G~i~l--~dt~~~~fr~ee~~lk~~~aH~n-----AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 70 ADEDGGIIL--FDTKSIVFRLEERQLKKPLAHKN-----AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ecCCCceee--ecchhhhcchhhhhhcccccccc-----eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 456788877 766432 23577788999 999999999558999999999999999998877655 789
Q ss_pred CCCceeEEEEccCCC-EEEEEEccccc
Q 041215 74 CGQPIPCSTFNTDGS-IFAYSVCYDWS 99 (136)
Q Consensus 74 h~~~v~~v~~sp~~~-~l~s~~~dd~~ 99 (136)
|.+.|.++||.|... .|++|+-|.-.
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEI 169 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcE
Confidence 999999999999776 56776666543
No 187
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.13 E-value=1.7e-05 Score=67.24 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=69.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee-ecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~ 80 (136)
|+.-|.+.+|.+- .+.++. .+.+|.+ .+..+.|+.+|++++++|.|..+++|.+++.+... ..-+|.+.|..
T Consensus 151 gsv~~~iivW~~~-~dn~p~-~l~GHeG-----~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 151 GSVFGEIIVWKPH-EDNKPI-RLKGHEG-----SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred ccccccEEEEecc-ccCCcc-eecccCC-----ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 5666777776665 233333 6789999 99999999999999999999999999999987665 55589999999
Q ss_pred EEEccCCCEEEEEEccc
Q 041215 81 STFNTDGSIFAYSVCYD 97 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd 97 (136)
++|.|. .+++++.|=
T Consensus 224 ~~~~~n--~i~t~gedc 238 (967)
T KOG0974|consen 224 CCFLPN--RIITVGEDC 238 (967)
T ss_pred EEeccc--eeEEeccce
Confidence 999998 777765543
No 188
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.13 E-value=1.2e-05 Score=60.76 Aligned_cols=86 Identities=15% Similarity=0.252 Sum_probs=68.2
Q ss_pred eceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cc--eeeecccCCCceeE
Q 041215 5 EGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQ--RLKAMSRCGQPIPC 80 (136)
Q Consensus 5 dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~--~~~~~~~h~~~v~~ 80 (136)
...+.|+..+-.. .+..++++.|.. .|++++|.|.++.|++|+.|..-++|.... +. ..-.+-.++...++
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~-----~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~ 105 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDK-----IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATC 105 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCc-----ceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceee
Confidence 3456665554444 567899999999 999999999999999999999999998843 32 22344567889999
Q ss_pred EEEccCCCEEEEEEc
Q 041215 81 STFNTDGSIFAYSVC 95 (136)
Q Consensus 81 v~~sp~~~~l~s~~~ 95 (136)
|.|+|....||+|++
T Consensus 106 V~WsP~enkFAVgSg 120 (361)
T KOG1523|consen 106 VKWSPKENKFAVGSG 120 (361)
T ss_pred EeecCcCceEEeccC
Confidence 999999999998866
No 189
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=4.2e-06 Score=71.36 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=67.6
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCC---CcEEEEeCCC-cceeeecccCCC
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSD---GAFNFWDKDS-KQRLKAMSRCGQ 76 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~d---g~v~vwd~~~-~~~~~~~~~h~~ 76 (136)
|+.+|...| ||.+..+++..+..+.+ +..++.+.|||+. ..++.++.| ..|.+||++. ...++.+.+|..
T Consensus 180 ~s~sg~~~i--WDlr~~~pii~ls~~~~---~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~ 254 (1049)
T KOG0307|consen 180 GSPSGRAVI--WDLRKKKPIIKLSDTPG---RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR 254 (1049)
T ss_pred cCCCCCcee--ccccCCCcccccccCCC---ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc
Confidence 567788877 88887777777766543 1257899999999 455555544 3699999875 345677889999
Q ss_pred ceeEEEEccCC-CEEEEEEccc
Q 041215 77 PIPCSTFNTDG-SIFAYSVCYD 97 (136)
Q Consensus 77 ~v~~v~~sp~~-~~l~s~~~dd 97 (136)
.|.+|.|++.+ +++++++.|.
T Consensus 255 GilslsWc~~D~~lllSsgkD~ 276 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDN 276 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCC
Confidence 99999999877 6777776665
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.12 E-value=5.3e-06 Score=68.16 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=53.6
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
-|..++|-|||..|+-+.. ..+.+||...|..++++.+|.+.|+||+|+.+|..+|+|+.|-
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCce
Confidence 5778999999965544432 4699999999999999999999999999999999999987765
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.12 E-value=2.6e-06 Score=63.04 Aligned_cols=54 Identities=22% Similarity=0.360 Sum_probs=50.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK 62 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~ 62 (136)
+.+||+|+++.| ++..++..++-|.. .|++++|+|+..+++.++.|..|.+|++
T Consensus 269 AGWD~RiRVysw--rtl~pLAVLkyHsa-----gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 269 AGWDHRIRVYSW--RTLNPLAVLKYHSA-----GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cccCCcEEEEEe--ccCCchhhhhhhhc-----ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 679999999666 88899999999999 9999999999999999999999999986
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.10 E-value=6.9e-05 Score=55.58 Aligned_cols=90 Identities=27% Similarity=0.397 Sum_probs=71.5
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceee-ecccCCCceeEEE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIPCST 82 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~v~ 82 (136)
|+.+.+ |+.........+..|.. .|.+++|+|++. .+++++.|+.+.+||...+..+. .+..|...+ ...
T Consensus 177 ~~~~~~--~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~ 248 (466)
T COG2319 177 DGTIKL--WDLRTGKPLSTLAGHTD-----PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS 248 (466)
T ss_pred CCceEE--EEcCCCceEEeeccCCC-----ceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEe
Confidence 777777 77777788888888888 999999999997 66666999999999988777777 688887765 448
Q ss_pred EccCCCEEEEEEcccccccc
Q 041215 83 FNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 83 ~sp~~~~l~s~~~dd~~~~~ 102 (136)
|++++..+++++.+.....+
T Consensus 249 ~~~~~~~~~~~~~d~~~~~~ 268 (466)
T COG2319 249 FSPDGSLLASGSSDGTIRLW 268 (466)
T ss_pred ECCCCCEEEEecCCCcEEEe
Confidence 99999888866666654443
No 193
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.09 E-value=4.2e-06 Score=65.94 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=89.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
++..|-+ .+.|+.+|+....+..-.+ .+..++-+|..-.+-.|...|+|.+|.-.+.+.+..+-.|.++|.+|
T Consensus 227 ~~~~G~L--~Y~DVS~GklVa~~~t~~G-----~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 227 ASEAGFL--KYQDVSTGKLVASIRTGAG-----RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI 299 (545)
T ss_pred cccCCce--EEEeechhhhhHHHHccCC-----ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence 3445555 4588899999888887778 88889999988888899999999999998888888888999999999
Q ss_pred EEccCCCEEEEEEcccccccccccCCCCCcceEEEEcCCcccccccC
Q 041215 82 TFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKP 128 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (136)
++.++|++.+|++-|.-.+..+...-.....+..-+|.+...++-|+
T Consensus 300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG 346 (545)
T ss_pred EECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc
Confidence 99999999999988774443333322212233333555555544443
No 194
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.08 E-value=1.7e-05 Score=63.27 Aligned_cols=90 Identities=23% Similarity=0.326 Sum_probs=67.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceee-ecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~ 79 (136)
+|..|.|.| ....++.....|..-.+ +.|.-+.|+|.. .+|.+++.+|.|.+||+.....++ ....|.+|+.
T Consensus 139 vs~gGdiii--h~~~t~~~tt~f~~~sg----qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~ 212 (673)
T KOG4378|consen 139 VSDGGDIII--HGTKTKQKTTTFTIDSG----QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR 212 (673)
T ss_pred eccCCcEEE--EecccCccccceecCCC----CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcC
Confidence 456677777 44466666667653323 255689999988 578899999999999998765554 4567999999
Q ss_pred EEEEccCCCEEEEEEccc
Q 041215 80 CSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd 97 (136)
.|+|+|....|+..-++|
T Consensus 213 gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYD 230 (673)
T ss_pred cceecCCccceEEEeccc
Confidence 999999988777666665
No 195
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=3.9e-05 Score=56.05 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=68.3
Q ss_pred EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc----ceeeecccCCCceeEEEEccC
Q 041215 11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK----QRLKAMSRCGQPIPCSTFNTD 86 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~sp~ 86 (136)
-+||++.+.++..|..|.. .|.|+.|+|...++.+++.|..|++=|++-. ..+...-.|.+.+-.+.|+|+
T Consensus 256 ~lydirg~r~iq~f~phsa-----dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSA-----DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred EEEEeeCCceeeeeCCCcc-----ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 3489999999999999999 9999999999999999999999999988632 123344578899999999999
Q ss_pred CCEEEEEEccc
Q 041215 87 GSIFAYSVCYD 97 (136)
Q Consensus 87 ~~~l~s~~~dd 97 (136)
...+++.+.|-
T Consensus 331 d~sfisssadk 341 (350)
T KOG0641|consen 331 DFSFISSSADK 341 (350)
T ss_pred cceeeeccCcc
Confidence 98888766554
No 196
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=7.2e-06 Score=69.98 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=74.6
Q ss_pred EEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215 8 VGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 8 v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
=.|.+||.+ ...+..++.+|.. .|.+++|++.+ ++|++++.|+.|.+|+.++++.+.++.....++..+.|+|
T Consensus 232 PviqlWDlR~assP~k~~~~H~~-----GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSPLKILEGHQR-----GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred ceeEeecccccCCchhhhccccc-----ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecC
Confidence 345568865 3466777889999 99999999888 8999999999999999999999999999889999999999
Q ss_pred CCC-EEEEEEcccccccc
Q 041215 86 DGS-IFAYSVCYDWSKGA 102 (136)
Q Consensus 86 ~~~-~l~s~~~dd~~~~~ 102 (136)
... +++.++-+++...+
T Consensus 307 r~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIY 324 (1049)
T ss_pred CCcchhhhheeccceeee
Confidence 887 56656666654433
No 197
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.03 E-value=2.4e-06 Score=71.33 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=71.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
||.|-.+.||. ..+...+....+|.+ .++.++.+....++++++.|..|++|.+.++..+..+.+|.+.|++|
T Consensus 208 gsdd~lvKiwS--~et~~~lAs~rGhs~-----ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtai 280 (1113)
T KOG0644|consen 208 GSDDRLVKIWS--METARCLASCRGHSG-----DITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAI 280 (1113)
T ss_pred cCccceeeeee--ccchhhhccCCCCcc-----ccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeee
Confidence 67777788855 577788889999999 99999999888899999999999999999999999999999999999
Q ss_pred EEccCC
Q 041215 82 TFNTDG 87 (136)
Q Consensus 82 ~~sp~~ 87 (136)
+|+|..
T Consensus 281 afsP~~ 286 (1113)
T KOG0644|consen 281 AFSPRA 286 (1113)
T ss_pred ccCccc
Confidence 999976
No 198
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=6.8e-06 Score=66.53 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=74.1
Q ss_pred CCceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC--CC----cc---eeee
Q 041215 1 VGSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK--DS----KQ---RLKA 70 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~--~~----~~---~~~~ 70 (136)
+||.|+.+++ ||.. +.++..++.-|.. .+..++||+...++++|+.||.+.+|.- .+ .. .+..
T Consensus 624 ~gs~d~k~~W--fDldlsskPyk~lr~H~~-----avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 624 LGSYDKKMCW--FDLDLSSKPYKTLRLHEK-----AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred EecCCCeeEE--EEcccCcchhHHhhhhhh-----hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 4788888887 6654 4577788888998 9999999999999999999999988752 11 11 2356
Q ss_pred cccCCCc----eeEEEEccCCCEEEEEEcccccccc
Q 041215 71 MSRCGQP----IPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 71 ~~~h~~~----v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
+.+|... |..+.|+|...+|.+++.|+..+.+
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 7788544 8889999999999999888765443
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=2.4e-05 Score=63.07 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=78.4
Q ss_pred CCceeceEEEEEeeCCCCcceeEE-EeeeCCCCccceeEEEEeCCC--CEEEEEcCCCcEEEEeCCC----------cce
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSEIYSVNSLNFHPIH--HTFATAGSDGAFNFWDKDS----------KQR 67 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~~--~~l~s~~~dg~v~vwd~~~----------~~~ 67 (136)
.||.|-.+.| ||+-..+.++.+ .+|.. .|.++.|-|.. +.+++|+.|..|++||+.. ...
T Consensus 67 SGSDD~r~iv--Wd~~~~KllhsI~TgHta-----NIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~ 139 (758)
T KOG1310|consen 67 SGSDDTRLIV--WDPFEYKLLHSISTGHTA-----NIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEET 139 (758)
T ss_pred ecCCcceEEe--ecchhcceeeeeeccccc-----ceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccch
Confidence 3676766766 777666666665 47888 99999998876 6899999999999999874 122
Q ss_pred eeecccCCCceeEEEEccCC-CEEEEEEcccccccccccCCC
Q 041215 68 LKAMSRCGQPIPCSTFNTDG-SIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 68 ~~~~~~h~~~v~~v~~sp~~-~~l~s~~~dd~~~~~~~~~~~ 108 (136)
...+..|...|..|+-.|++ ..+-+++.|+...+++...|.
T Consensus 140 ~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 140 TRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred hhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 34566788899999999998 567778888888888777654
No 200
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=1.1e-05 Score=64.76 Aligned_cols=73 Identities=22% Similarity=0.464 Sum_probs=63.2
Q ss_pred ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC--------cceeeecccCCCceeEEEEccCCCEEE
Q 041215 20 KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS--------KQRLKAMSRCGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 20 ~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~--------~~~~~~~~~h~~~v~~v~~sp~~~~l~ 91 (136)
+.+++..|.. -+..+.|+|....|++++.|+.|.+|+++. -+.+.+|.+|.++|.|+++.+.+..+.
T Consensus 286 ik~tl~s~~d-----~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 286 IKFTLRSHDD-----CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred eeeeeecchh-----hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence 4456666766 889999999999999999999999999932 245689999999999999999999999
Q ss_pred EEEccc
Q 041215 92 YSVCYD 97 (136)
Q Consensus 92 s~~~dd 97 (136)
+|+.|+
T Consensus 361 sgg~Dg 366 (577)
T KOG0642|consen 361 SGGIDG 366 (577)
T ss_pred eeccCc
Confidence 998888
No 201
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.97 E-value=3.5e-05 Score=38.09 Aligned_cols=38 Identities=34% Similarity=0.554 Sum_probs=33.1
Q ss_pred cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEe
Q 041215 19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWD 61 (136)
Q Consensus 19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd 61 (136)
.....+..|.. .|.++.|++.+..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTG-----PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCC-----ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566777888 999999999999999999999999996
No 202
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.95 E-value=1.5e-05 Score=60.54 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=49.3
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD 63 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~ 63 (136)
+||.|..|++ |++++...+..|.+-.+ |++.|.+++|++++.++++++.|..|.+|++.
T Consensus 153 s~SkD~svRl--wnI~~~~Cv~VfGG~eg--HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 153 SASKDHSVRL--WNIQTDVCVAVFGGVEG--HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred EecCCceEEE--EeccCCeEEEEeccccc--ccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 3788999998 67788888877754322 33399999999999999999999999999987
No 203
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.92 E-value=2.7e-05 Score=40.59 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=30.3
Q ss_pred ceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 66 QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 66 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
+++.++.+|.+.|++|+|+|++.+|++++.|...
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i 35 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTI 35 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEE
Confidence 5678899999999999999999999999887654
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=9.9e-05 Score=56.93 Aligned_cols=82 Identities=12% Similarity=0.222 Sum_probs=55.9
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeeecccCCCceeEEEEc
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPIPCSTFN 84 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~s 84 (136)
..|.| ||+.++...-...--.+ .++-+.|+|++..|+++..|+..++|+... ....... ...+.|+..+|+
T Consensus 218 ssi~i--Wdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWs 289 (445)
T KOG2139|consen 218 SSIMI--WDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWS 289 (445)
T ss_pred ceEEE--EcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeec
Confidence 34555 66665443332222234 678899999999999999999999996543 3333333 334599999999
Q ss_pred cCCCEEEEEEc
Q 041215 85 TDGSIFAYSVC 95 (136)
Q Consensus 85 p~~~~l~s~~~ 95 (136)
|+|+.|+.++.
T Consensus 290 pcGsfLLf~~s 300 (445)
T KOG2139|consen 290 PCGSFLLFACS 300 (445)
T ss_pred CCCCEEEEEEc
Confidence 99997665544
No 205
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00012 Score=55.08 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=59.1
Q ss_pred eeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCC-Ccceeee-cccCCCceeEEEEcc-CCCEEEEEEcc
Q 041215 21 NFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKD-SKQRLKA-MSRCGQPIPCSTFNT-DGSIFAYSVCY 96 (136)
Q Consensus 21 ~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~-~~~~~~~-~~~h~~~v~~v~~sp-~~~~l~s~~~d 96 (136)
..+++.|+- +++.+.|+... +++++|++|+.+..||.+ .+..+.. ..-|...|.+|.-+| .+.++++|+-|
T Consensus 158 vq~wk~He~-----E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 158 VQTWKVHEF-----EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred cccccccce-----eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence 347788888 99999997666 799999999999999998 3444433 456788899998886 46789999888
Q ss_pred cccc
Q 041215 97 DWSK 100 (136)
Q Consensus 97 d~~~ 100 (136)
+...
T Consensus 233 e~i~ 236 (339)
T KOG0280|consen 233 ECIR 236 (339)
T ss_pred ccee
Confidence 8764
No 206
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.81 E-value=0.00021 Score=53.80 Aligned_cols=107 Identities=8% Similarity=0.131 Sum_probs=75.6
Q ss_pred CceeceEEEEEeeCCC--CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcce---eeecccCC
Q 041215 2 GSIEGRVGVHHLDDSQ--QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQR---LKAMSRCG 75 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~--~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h~ 75 (136)
++.+..+++|..+... -.....+..++......++++..|+.-. +++.+.+-|-+..+||++++.. .-++-.|.
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD 196 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD 196 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence 4566778887776432 2223334334444444589999998666 7899999999999999998633 45677999
Q ss_pred CceeEEEEccCCC-EEEEEEcccccccccccCCC
Q 041215 76 QPIPCSTFNTDGS-IFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 76 ~~v~~v~~sp~~~-~l~s~~~dd~~~~~~~~~~~ 108 (136)
..|..|+|...+. +||+.+.|+=.+-|+-...+
T Consensus 197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred cceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 9999999998664 67777777755555554444
No 207
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=0.00017 Score=53.20 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=70.7
Q ss_pred eeceEEEEEeeCCCC----cceeEE--EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc
Q 041215 4 IEGRVGVHHLDDSQQ----SKNFTF--KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP 77 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~----~~~~~l--~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 77 (136)
-||.|.-|.|..... +.+... .-|.+..++-.|+++.+.|..+-++.++-|+.++.||+++|....++.+|.+-
T Consensus 79 gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 79 GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence 368888888854211 111111 11222333336899999999877777778999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEEcccccc
Q 041215 78 IPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
|+|+.--.....+++|+.|+..+
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVR 181 (325)
T ss_pred eeeeeecccCcceeecCCCccEE
Confidence 99999966666778888888663
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.00025 Score=56.24 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=54.0
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcce--eeecccCCCceeEEEE
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQR--LKAMSRCGQPIPCSTF 83 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~--~~~~~~h~~~v~~v~~ 83 (136)
.|+++|..... ...+..+.. .+...+|+|+|+.|+..+.+ ..|.+||+.++.. +..+.++ ...++|
T Consensus 185 ~i~i~d~dg~~-~~~lt~~~~-----~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 185 EVRVADYDGFN-QFIVNRSSQ-----PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF 255 (429)
T ss_pred EEEEECCCCCC-ceEeccCCC-----ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence 44556654333 345566777 89999999999888777643 3699999988753 3333333 357899
Q ss_pred ccCCCEEEEEEc
Q 041215 84 NTDGSIFAYSVC 95 (136)
Q Consensus 84 sp~~~~l~s~~~ 95 (136)
+|+|+.|+.++.
T Consensus 256 SPDG~~La~~~~ 267 (429)
T PRK01742 256 SPDGSRLAFASS 267 (429)
T ss_pred CCCCCEEEEEEe
Confidence 999998887653
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.00044 Score=54.80 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=58.1
Q ss_pred eEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC---CCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215 7 RVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS---DGAFNFWDKDSKQRLKAMSRCGQPIPCSTF 83 (136)
Q Consensus 7 ~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 83 (136)
.-.||.+|.. +.....+..+.. .+...+|+|+|+.|+..+. +..|.+||+.++.. ..+..+.+.+...+|
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~~-----~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGSS-----LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRF 253 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCCC-----CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEE
Confidence 3456667764 344455666777 8999999999987776653 35799999988764 344455667788999
Q ss_pred ccCCCEEEEEE
Q 041215 84 NTDGSIFAYSV 94 (136)
Q Consensus 84 sp~~~~l~s~~ 94 (136)
+|+|+.++...
T Consensus 254 SPDG~~la~~~ 264 (435)
T PRK05137 254 SPDGRKVVMSL 264 (435)
T ss_pred CCCCCEEEEEE
Confidence 99999776443
No 210
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.71 E-value=0.0001 Score=58.04 Aligned_cols=92 Identities=16% Similarity=0.311 Sum_probs=70.8
Q ss_pred CCceeceEEEEEeeC--CCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcce--eeecccCC
Q 041215 1 VGSIEGRVGVHHLDD--SQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQR--LKAMSRCG 75 (136)
Q Consensus 1 vgs~dG~v~i~~~d~--~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~--~~~~~~h~ 75 (136)
+|+.-|+|-+|.++. ....-.+-+..|.. +|+++.|+|.. ..+.+.+.||+|++-|++.... +.......
T Consensus 205 ~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-----~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~ 279 (498)
T KOG4328|consen 205 VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-----PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN 279 (498)
T ss_pred EccCCCcEEEEecCCCCCccCceEEeccCCc-----cccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence 578889999988863 33445677788999 99999999988 6888999999999999987533 22232345
Q ss_pred CceeEEEEccCCCEEEEEEccc
Q 041215 76 QPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~dd 97 (136)
..+..+.|+.+...++.+..++
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~G 301 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNVG 301 (498)
T ss_pred eeeeeccccCCCccEEEeeccc
Confidence 6778889988888888776665
No 211
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.71 E-value=0.00014 Score=55.80 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=77.5
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCcee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIP 79 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~ 79 (136)
||...|.|....++...-..+.++++|.. .+.+++|.|....|+++..|-.+.+||+--. ....++.+|.+.|+
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~-----~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTG-----EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCccc-----ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 45567778777777777788899999999 9999999999999999999999999998643 33567889999999
Q ss_pred EEEEccCCCEEEEEEccc
Q 041215 80 CSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd 97 (136)
.+++.+....+.+++.|.
T Consensus 245 ~l~~~~~t~~l~S~~edg 262 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDG 262 (404)
T ss_pred hhhhhhhheeeeeccCCC
Confidence 999988888888776665
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.00042 Score=53.56 Aligned_cols=63 Identities=17% Similarity=0.345 Sum_probs=51.1
Q ss_pred ceeEEEEeCCCCEEEEEcCC-CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFATAGSD-GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
+|+.+.|.+||..+++++-+ ..|.+||..++..+--.....+.+.-+.||||+.++..+..|.
T Consensus 197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred eeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc
Confidence 89999999999999998875 5699999999876544444557788999999999888765544
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.67 E-value=0.00046 Score=54.68 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=55.6
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeEEE
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPCST 82 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~ 82 (136)
+.-.||.+|.. +.....+..+.. .+.+.+|+|+|+.|+..+.+ ..|.+||+.++... .+....+.+.+.+
T Consensus 174 ~~~~L~~~D~d-G~~~~~l~~~~~-----~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~ 246 (427)
T PRK02889 174 NRYQLQISDAD-GQNAQSALSSPE-----PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPA 246 (427)
T ss_pred CccEEEEECCC-CCCceEeccCCC-----CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceE
Confidence 34456667663 333444455666 88899999999877666542 35999999887653 3333345567899
Q ss_pred EccCCCEEEEEE
Q 041215 83 FNTDGSIFAYSV 94 (136)
Q Consensus 83 ~sp~~~~l~s~~ 94 (136)
|+|+|+.++...
T Consensus 247 ~SPDG~~la~~~ 258 (427)
T PRK02889 247 WSPDGRTLAVAL 258 (427)
T ss_pred ECCCCCEEEEEE
Confidence 999999877543
No 214
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00041 Score=55.95 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=72.6
Q ss_pred EEEEeeCCCCcceeEEE--eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC
Q 041215 9 GVHHLDDSQQSKNFTFK--CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD 86 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~--~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~ 86 (136)
.++.|+...++..+.+. +|.+ .|+++.++.+...|.+++.|+.+..|+...+..++.+.+....+.+++++||
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~-----~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYG-----NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCC-----cceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence 34558888888888876 5888 9999999999999999999999999999999888888888889999999999
Q ss_pred CCEEEEEEc
Q 041215 87 GSIFAYSVC 95 (136)
Q Consensus 87 ~~~l~s~~~ 95 (136)
+.++++|+.
T Consensus 156 ~~~l~~as~ 164 (541)
T KOG4547|consen 156 GKILLTASR 164 (541)
T ss_pred CCEEEeccc
Confidence 999998866
No 215
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.58 E-value=0.00022 Score=54.41 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=39.3
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK 62 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~ 62 (136)
|.|.-|.+ ||+-+++....+...+...+.-...++.|+|||..|++|- ...|++||+
T Consensus 130 sr~~PIh~--wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt 186 (406)
T KOG2919|consen 130 SRDQPIHL--WDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDT 186 (406)
T ss_pred cccCceee--eeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeec
Confidence 44555544 8888887777766544333333567899999998888774 456899887
No 216
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.57 E-value=0.00016 Score=59.14 Aligned_cols=87 Identities=18% Similarity=0.350 Sum_probs=65.2
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc--ceeeecccCCCceeEE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK--QRLKAMSRCGQPIPCS 81 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~--~~~~~~~~h~~~v~~v 81 (136)
|.+++||.-+. ...+++.+..+.. .|.+++|+|-. ..|+++..+|.|.+||+... ..+.....+....+.+
T Consensus 419 DW~vriWs~~~-~~~Pl~~~~~~~~-----~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~ 492 (555)
T KOG1587|consen 419 DWTVRIWSEDV-IASPLLSLDSSPD-----YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV 492 (555)
T ss_pred cceeEeccccC-CCCcchhhhhccc-----eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee
Confidence 78888844432 4567777777777 79999999988 57778888999999998642 3344444456677889
Q ss_pred EEccCCCEEEEEEccc
Q 041215 82 TFNTDGSIFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd 97 (136)
.|++.|++++.|...+
T Consensus 493 ~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 493 RWSPNGKLLAVGDANG 508 (555)
T ss_pred ecCCCCcEEEEecCCC
Confidence 9999999999876554
No 217
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.00052 Score=57.58 Aligned_cols=66 Identities=14% Similarity=0.283 Sum_probs=52.7
Q ss_pred CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC--c--ceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 32 EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS--K--QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 32 ~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~--~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
|-+.+++.++||.+++++++..||.|.+|+-.. . .....+.=|.+.|++++|+++|.+|.+|+...
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce
Confidence 333789999999999999999999999997332 1 22234445789999999999999999987654
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.56 E-value=0.00036 Score=55.32 Aligned_cols=84 Identities=7% Similarity=0.090 Sum_probs=55.0
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEE-EEcCCCcEEEEeCCCc-ceeeecccCCCceeEE
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFA-TAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPCS 81 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~-s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v 81 (136)
.+|...||.+|..++.. ..+..+.. .+....|+|+|..|+ +...++...+|++... .....+ .+.. .+.
T Consensus 268 ~~g~~~Iy~~d~~~~~~-~~lt~~~~-----~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~ 338 (429)
T PRK01742 268 KDGVLNIYVMGANGGTP-SQLTSGAG-----NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSA 338 (429)
T ss_pred cCCcEEEEEEECCCCCe-EeeccCCC-----CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCc
Confidence 47777888888765543 34455555 678899999998655 4446778888876532 222222 3333 457
Q ss_pred EEccCCCEEEEEEcc
Q 041215 82 TFNTDGSIFAYSVCY 96 (136)
Q Consensus 82 ~~sp~~~~l~s~~~d 96 (136)
.|+|+++.++.++.+
T Consensus 339 ~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 339 QISADGKTLVMINGD 353 (429)
T ss_pred cCCCCCCEEEEEcCC
Confidence 899999988776553
No 219
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.49 E-value=0.0016 Score=52.91 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=53.8
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
.|.+++++|+...|+.|..||.|.+||...+.. .+....-..+.++|+|+|.+++.|+.-+-.-.|++
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 899999999999999999999999999876532 23344456789999999999999877554433444
No 220
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.48 E-value=0.00011 Score=54.49 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=51.0
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc-eeeecccCCCceeEEEEccC-CCEEEEEEccc
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ-RLKAMSRCGQPIPCSTFNTD-GSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~-~~~l~s~~~dd 97 (136)
.|.+++-||.. +.+++|+.||.+-+||.++.. ....+..|..++..|.|+|. +..|++++.|+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence 68899999988 678888889999999998763 34567789999999999995 45677776655
No 221
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.48 E-value=0.00067 Score=55.59 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=63.5
Q ss_pred CCceeceEEE-EEeeCCCC-----cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC-Ccceeeeccc
Q 041215 1 VGSIEGRVGV-HHLDDSQQ-----SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD-SKQRLKAMSR 73 (136)
Q Consensus 1 vgs~dG~v~i-~~~d~~~~-----~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~ 73 (136)
||+.+|.|.- ...+.+.. +....+.+|.+ +|.++.++|-+..++..+.|..+++|... ....+..+..
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g-----~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~ 439 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG-----PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS 439 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCc-----ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh
Confidence 5788888765 22222222 22345567778 99999999999655555559999999987 5666777777
Q ss_pred CCCceeEEEEccCCCEEEEEEc
Q 041215 74 CGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 74 h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
+.+.|++++|||....+.....
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEc
Confidence 8788999999998765444333
No 222
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.00051 Score=59.28 Aligned_cols=87 Identities=17% Similarity=0.291 Sum_probs=66.6
Q ss_pred CceeceEEEEEeeCCCCc---ceeEEEeeeCCCCccc--eeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcce--eeeccc
Q 041215 2 GSIEGRVGVHHLDDSQQS---KNFTFKCHRDGSEIYS--VNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQR--LKAMSR 73 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~---~~~~l~~h~~~~~~~~--v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~--~~~~~~ 73 (136)
|-.||.+++ ||.+... ....++.|.. . |..+.+.+.| ..|++|+.+|.|++||++.... ..+...
T Consensus 1227 GfaDGsvRv--yD~R~a~~ds~v~~~R~h~~-----~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1227 GFADGSVRV--YDRRMAPPDSLVCVYREHND-----VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred eecCCceEE--eecccCCccccceeecccCC-----cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 567999998 8877543 4566677776 5 9999999988 5799999999999999986322 122223
Q ss_pred C---CCceeEEEEccCCCEEEEEEc
Q 041215 74 C---GQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 74 h---~~~v~~v~~sp~~~~l~s~~~ 95 (136)
| ++.++++..+++..++|+|+.
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc
Confidence 3 236899999999999999875
No 223
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.44 E-value=0.00026 Score=57.90 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=63.1
Q ss_pred ceeceEEEEEeeCCCCcceeE--EEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc--e----------
Q 041215 3 SIEGRVGVHHLDDSQQSKNFT--FKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ--R---------- 67 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~--l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~--~---------- 67 (136)
|-|.+++. ||......... +.+|.. .|..++|+|.. ..|++|+.||.|.|||+.-.. .
T Consensus 119 sGDsT~r~--Wdvk~s~l~G~~~~~GH~~-----SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~ 191 (720)
T KOG0321|consen 119 SGDSTIRP--WDVKTSRLVGGRLNLGHTG-----SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG 191 (720)
T ss_pred cCCceeee--eeeccceeecceeeccccc-----ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence 44556655 88777666555 788999 99999999988 689999999999999975211 0
Q ss_pred ---------------eeecccCCCceeE---EEEccCCCEEEEEEccc
Q 041215 68 ---------------LKAMSRCGQPIPC---STFNTDGSIFAYSVCYD 97 (136)
Q Consensus 68 ---------------~~~~~~h~~~v~~---v~~sp~~~~l~s~~~dd 97 (136)
+.....+...|.+ +-+..|...||+++..|
T Consensus 192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D 239 (720)
T KOG0321|consen 192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAAD 239 (720)
T ss_pred cccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCC
Confidence 0001124455666 77788999999988833
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.43 E-value=0.0028 Score=48.24 Aligned_cols=58 Identities=14% Similarity=0.315 Sum_probs=46.4
Q ss_pred Cceece-EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC
Q 041215 2 GSIEGR-VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 2 gs~dG~-v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~ 64 (136)
||.-|+ |+| ||..++..+..+.- +...+.|-+++|+|++.+|+.+|+-|+|++|.+..
T Consensus 199 aStkGTLIRI--Fdt~~g~~l~E~RR---G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 199 ASTKGTLIRI--FDTEDGTLLQELRR---GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eccCcEEEEE--EEcCCCcEeeeeec---CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 566777 555 99998888887652 23334799999999999999999999999998764
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.39 E-value=0.0021 Score=49.42 Aligned_cols=62 Identities=18% Similarity=0.301 Sum_probs=47.2
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+..++|+|+| +.|.+...+-.|.+|.+.+..... +.-....+..++|+|+|++.+.++.-|
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeeccc
Confidence 78999999999 667777778899999998866533 222234568899999999887765433
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.38 E-value=0.00069 Score=59.11 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=59.9
Q ss_pred CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc-------ceeeecccCCCceeEEEEccCCCE
Q 041215 18 QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK-------QRLKAMSRCGQPIPCSTFNTDGSI 89 (136)
Q Consensus 18 ~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~v~~sp~~~~ 89 (136)
|....++..|.. .+..++.++.. .++++|+.||+|++|+.... ....++......+.++.+.+.+..
T Consensus 1038 G~lVAhL~Ehs~-----~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1038 GILVAHLHEHSS-----AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred ceEeehhhhccc-----cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 455666777888 88888887666 89999999999999997631 223345446789999999999999
Q ss_pred EEEEEccccc
Q 041215 90 FAYSVCYDWS 99 (136)
Q Consensus 90 l~s~~~dd~~ 99 (136)
+|.++.|+.-
T Consensus 1113 ~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1113 FAVSTKDGSV 1122 (1431)
T ss_pred EEEEcCCCeE
Confidence 9998777743
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.37 E-value=0.0021 Score=51.04 Aligned_cols=85 Identities=11% Similarity=0.129 Sum_probs=54.0
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEE--EeCCCcceeeecccCCCceeEE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNF--WDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~v--wd~~~~~~~~~~~~h~~~v~~v 81 (136)
+|...|+.+|..++.... +..+.. .+....|+|+|+.|+..+. ++...+ +|+.++.. ..+........+.
T Consensus 264 ~g~~~I~~~d~~tg~~~~-lt~~~~-----~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~ 336 (429)
T PRK03629 264 TGSLNLYVMDLASGQIRQ-VTDGRS-----NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDA 336 (429)
T ss_pred CCCcEEEEEECCCCCEEE-ccCCCC-----CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCE
Confidence 455556778876655433 233334 5678999999987765554 444444 46665543 3444444556788
Q ss_pred EEccCCCEEEEEEcc
Q 041215 82 TFNTDGSIFAYSVCY 96 (136)
Q Consensus 82 ~~sp~~~~l~s~~~d 96 (136)
.|+|+|++++..+.+
T Consensus 337 ~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 337 DVSSDGKFMVMVSSN 351 (429)
T ss_pred EECCCCCEEEEEEcc
Confidence 999999998876554
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.36 E-value=0.002 Score=51.11 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=54.5
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCc--EEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGA--FNFWDKDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
.++.+|..++.. ..+..+.+ .+...+|+|+|..| ++.+.++. |.+||+.++.. ..+..+........|+|
T Consensus 227 ~i~~~dl~~g~~-~~l~~~~g-----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 227 RVYLLDLETGQR-ELVGNFPG-----MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP 299 (435)
T ss_pred EEEEEECCCCcE-EEeecCCC-----cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC
Confidence 455566655543 23344555 66788999999755 56666654 77778887654 45656666677899999
Q ss_pred CCCEEEEEEc
Q 041215 86 DGSIFAYSVC 95 (136)
Q Consensus 86 ~~~~l~s~~~ 95 (136)
+++.++..+.
T Consensus 300 DG~~i~f~s~ 309 (435)
T PRK05137 300 DGSQIVFESD 309 (435)
T ss_pred CCCEEEEEEC
Confidence 9998887654
No 229
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.33 E-value=7.9e-05 Score=62.65 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=62.6
Q ss_pred eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 22 ~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
.-+.+|.+ +|-|+.|...|++++++++|..++||.++++.++....+|.+.++.++.+-...++++++.|
T Consensus 184 krLlgH~n-----aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 184 KRLLGHRN-----AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHHHhhhh-----heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccC
Confidence 34567777 99999999999999999999999999999999999999999999999999888888866555
No 230
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.32 E-value=0.0032 Score=50.47 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=66.8
Q ss_pred CCceec-eEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 1 VGSIEG-RVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 1 vgs~dG-~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
+|..|| .+-| ||..+++...... .-+ .|.++..+|+|.+++.+.....+-+.|+.++...---...-+-|.
T Consensus 376 igt~dgD~l~i--yd~~~~e~kr~e~-~lg-----~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lIt 447 (668)
T COG4946 376 IGTNDGDKLGI--YDKDGGEVKRIEK-DLG-----NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLIT 447 (668)
T ss_pred EeccCCceEEE--EecCCceEEEeeC-Ccc-----ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeE
Confidence 356777 4555 7777666555533 445 899999999999999998888899999999865332233458899
Q ss_pred EEEEccCCCEEEEEEccc
Q 041215 80 CSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd 97 (136)
...|+|+++++|.+-.+.
T Consensus 448 df~~~~nsr~iAYafP~g 465 (668)
T COG4946 448 DFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred EEEEcCCceeEEEecCcc
Confidence 999999999999874433
No 231
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0014 Score=52.92 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=48.7
Q ss_pred ceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
+=+++-|+|.|++++-++.+ |.+.+||+.+.+.+..+..... +-..|+|||++++|+..
T Consensus 313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATT 374 (566)
T ss_pred CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEec
Confidence 55789999999998888875 7899999999888877755433 55689999999999865
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.30 E-value=0.0022 Score=50.91 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=53.6
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
.|+.+|.. +.....+..+.. .+...+|+|+++.|+..+.. ..|.+||+.++... .+....+...+..|+|
T Consensus 185 ~l~i~D~~-g~~~~~lt~~~~-----~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 185 ALQVADSD-GYNPQTILRSAE-----PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSP 257 (433)
T ss_pred EEEEECCC-CCCceEeecCCC-----ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECC
Confidence 45667764 333444555666 88899999999877776643 46999999877643 3333444556789999
Q ss_pred CCCEEEEE
Q 041215 86 DGSIFAYS 93 (136)
Q Consensus 86 ~~~~l~s~ 93 (136)
+|+.++..
T Consensus 258 DG~~l~~~ 265 (433)
T PRK04922 258 DGRRLALT 265 (433)
T ss_pred CCCEEEEE
Confidence 99877643
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.0013 Score=53.57 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=64.3
Q ss_pred eeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc------cCC-----CceeEE
Q 041215 13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS------RCG-----QPIPCS 81 (136)
Q Consensus 13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~------~h~-----~~v~~v 81 (136)
++...|.-+..|..-.+ .+++|..++-..+|++|+.+|.|.+||..+...+..+. .|. ..|+++
T Consensus 160 lNLEqGrfL~P~~~~~~-----~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal 234 (703)
T KOG2321|consen 160 LNLEQGRFLNPFETDSG-----ELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL 234 (703)
T ss_pred EEccccccccccccccc-----cceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence 34444444445554445 89999999999999999999999999988765544332 222 348999
Q ss_pred EEccCCCEEEEEEccccccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~~~~~ 105 (136)
.|+.+|-.++.|.+.+....++..
T Consensus 235 ~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 235 KFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred EecCCceeEEeeccCCcEEEEEcc
Confidence 999999999999888866555443
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.00044 Score=53.65 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=57.0
Q ss_pred ceEEEEEeeCCCCcceeE-EEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215 6 GRVGVHHLDDSQQSKNFT-FKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN 84 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~-l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 84 (136)
|.+.. ||.+.++.... |++..+ .|..+-.||.+.+|++++-|..|+|+|+++...++.. -....+++|-+.
T Consensus 269 g~l~~--FD~r~~kl~g~~~kg~tG-----sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~ 340 (412)
T KOG3881|consen 269 GQLAK--FDLRGGKLLGCGLKGITG-----SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLR 340 (412)
T ss_pred chhhe--ecccCceeeccccCCccC-----CcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEec
Confidence 44444 88888877766 888889 9999999999999999999999999999996665543 234566777775
Q ss_pred cC
Q 041215 85 TD 86 (136)
Q Consensus 85 p~ 86 (136)
++
T Consensus 341 ~~ 342 (412)
T KOG3881|consen 341 DD 342 (412)
T ss_pred CC
Confidence 43
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.28 E-value=0.0031 Score=50.04 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=51.8
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEE-EEcCCCcEEEEe--CCCcceeeecccCCCceeEEEEcc
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFA-TAGSDGAFNFWD--KDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~-s~~~dg~v~vwd--~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
.||.+|..++.... +....+ .....+|+|+|..|+ +.+.++...+|. +..+. ...+..+........|+|
T Consensus 221 ~I~~~dl~~g~~~~-l~~~~g-----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp 293 (427)
T PRK02889 221 VVYVHDLATGRRRV-VANFKG-----SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSP 293 (427)
T ss_pred EEEEEECCCCCEEE-eecCCC-----CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcC
Confidence 35667766554432 233334 556889999997664 667777766665 44443 455555555667789999
Q ss_pred CCCEEEEEEc
Q 041215 86 DGSIFAYSVC 95 (136)
Q Consensus 86 ~~~~l~s~~~ 95 (136)
+|+.++..+.
T Consensus 294 DG~~l~f~s~ 303 (427)
T PRK02889 294 DGRSIYFTSD 303 (427)
T ss_pred CCCEEEEEec
Confidence 9998876543
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.19 E-value=0.0048 Score=49.01 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=43.9
Q ss_pred ceeEEEEeCCCCEEEEE-cCCC--cEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 35 SVNSLNFHPIHHTFATA-GSDG--AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~-~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
.+....|+|+|..|+.. +.++ .|.+||+.++... .+..+...+....|+|+++.++..+..
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCC
Confidence 44568999999766643 4454 4888999887654 444445567889999999988776653
No 237
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.15 E-value=0.0091 Score=45.33 Aligned_cols=85 Identities=6% Similarity=-0.016 Sum_probs=54.7
Q ss_pred ceeceEEEEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCC-Ccce--eeecccCCC
Q 041215 3 SIEGRVGVHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKD-SKQR--LKAMSRCGQ 76 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~-~~~~--~~~~~~h~~ 76 (136)
..++.|.+|.++. .+. .+..+. ..+ ....++++|++++|+.++ .++.|.+|++. ++.. +.... ..+
T Consensus 9 ~~~~~I~~~~~~~-~g~l~~~~~~~-~~~-----~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 9 PESQQIHVWNLNH-EGALTLLQVVD-VPG-----QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred CCCCCEEEEEECC-CCceeeeeEEe-cCC-----CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 4578888855532 232 334443 234 677899999998776654 56789999986 3332 22221 234
Q ss_pred ceeEEEEccCCCEEEEEEc
Q 041215 77 PIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~ 95 (136)
....++|+|+++++.++..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~ 99 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASY 99 (330)
T ss_pred CceEEEECCCCCEEEEEEc
Confidence 5678999999998887653
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.14 E-value=0.0048 Score=48.96 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=52.0
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCc--EEEEeCCCcceeeecccCCCceeE
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGA--FNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~--v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.+|.-.|+.+|..++.. ..+..+.. .....+|+|+|+.|+..+ .++. |.++++.++.. ..+..+......
T Consensus 268 ~~g~~~Iy~~d~~~g~~-~~lt~~~~-----~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~ 340 (433)
T PRK04922 268 RDGNPEIYVMDLGSRQL-TRLTNHFG-----IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNAR 340 (433)
T ss_pred CCCCceEEEEECCCCCe-EECccCCC-----CccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccC
Confidence 34444566677765543 33333433 446789999998666554 4454 66667666543 333333344557
Q ss_pred EEEccCCCEEEEEEc
Q 041215 81 STFNTDGSIFAYSVC 95 (136)
Q Consensus 81 v~~sp~~~~l~s~~~ 95 (136)
.+|+|+|+.++....
T Consensus 341 ~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 341 ASVSPDGKKIAMVHG 355 (433)
T ss_pred EEECCCCCEEEEEEC
Confidence 899999998887654
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.14 E-value=0.006 Score=47.61 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=53.4
Q ss_pred eEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215 7 RVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPCSTF 83 (136)
Q Consensus 7 ~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 83 (136)
.-.|+.+|.... ....+..+.. .+...+|+|+++.|+....+ ..|.+||+.++... .+..+...+.+++|
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~~-----~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~ 241 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSRE-----PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAF 241 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCCC-----ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEE
Confidence 334555665433 3344444555 68888999999887766543 46999999887543 33344556678999
Q ss_pred ccCCCEEEEE
Q 041215 84 NTDGSIFAYS 93 (136)
Q Consensus 84 sp~~~~l~s~ 93 (136)
+|+++.|+..
T Consensus 242 spDg~~l~~~ 251 (417)
T TIGR02800 242 SPDGSKLAVS 251 (417)
T ss_pred CCCCCEEEEE
Confidence 9999877654
No 240
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.11 E-value=0.0015 Score=50.71 Aligned_cols=74 Identities=7% Similarity=-0.058 Sum_probs=59.1
Q ss_pred EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-ccCCCceeEEEEccCCCEEEEEEccccccccc
Q 041215 25 KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 25 ~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
-+|-+ -+..++|+||++++.++..|..|++-.+.....+..| -+|..-|..++.-++.. |++|++|+....-+
T Consensus 148 lGhvS-----ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 148 LGHVS-----MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWD 221 (390)
T ss_pred hhhhh-----hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEe
Confidence 35766 8999999999999999999999999887765555544 46999999999987765 78888888654443
Q ss_pred c
Q 041215 104 N 104 (136)
Q Consensus 104 ~ 104 (136)
+
T Consensus 222 ~ 222 (390)
T KOG3914|consen 222 I 222 (390)
T ss_pred c
Confidence 3
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.11 E-value=0.01 Score=46.87 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=51.9
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
.++..|..... ...+..+.. .+...+|+|+|+.|+..+.+ ..|.+|++.++... .+....+.+...+|+|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~-----~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSRE-----PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCC-ceEEecCCC-----ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECC
Confidence 45556655433 344445566 78899999999877665533 35888999887643 3333334556789999
Q ss_pred CCCEEEEE
Q 041215 86 DGSIFAYS 93 (136)
Q Consensus 86 ~~~~l~s~ 93 (136)
+|+.++..
T Consensus 253 DG~~la~~ 260 (430)
T PRK00178 253 DGSKLAFV 260 (430)
T ss_pred CCCEEEEE
Confidence 99987754
No 242
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.0014 Score=56.72 Aligned_cols=91 Identities=15% Similarity=0.248 Sum_probs=64.6
Q ss_pred CCceeceEEEEEeeCCCC--cceeEEEeee---CCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc--
Q 041215 1 VGSIEGRVGVHHLDDSQQ--SKNFTFKCHR---DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-- 73 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~--~~~~~l~~h~---~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-- 73 (136)
.||.||.|.+ ||.+.. ....+...|. + ..+++..|++...+++|+. +.|.||++.-. .+..+..
T Consensus 1274 Sgs~~G~I~~--~DlR~~~~e~~~~iv~~~~yGs-----~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1274 SGSQDGDIQL--LDLRMSSKETFLTIVAHWEYGS-----ALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNP 1344 (1387)
T ss_pred eeccCCeEEE--EecccCcccccceeeeccccCc-----cceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCc
Confidence 3789999988 777653 2223333343 2 4899999999999999998 89999998632 2222211
Q ss_pred -----CCCceeEEEEccCCCEEEEEEcccccc
Q 041215 74 -----CGQPIPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 74 -----h~~~v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
-.+.+.|++|+|..-++|.|..|.+..
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 236779999999999999886666553
No 243
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.09 E-value=0.012 Score=51.71 Aligned_cols=115 Identities=16% Similarity=0.136 Sum_probs=75.0
Q ss_pred CCceeceEEEEEeeCCCCc-----ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc----------
Q 041215 1 VGSIEGRVGVHHLDDSQQS-----KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK---------- 65 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~-----~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~---------- 65 (136)
.||.||+|++|....-.+. ..-++.-..+ ++.++...+.++.++.++.||.|++.++...
T Consensus 1066 sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s-----r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ 1140 (1431)
T KOG1240|consen 1066 SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS-----RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV 1140 (1431)
T ss_pred EecCCceEEEeeehhhhcCcceeeeeEEEeccCC-----ceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee
Confidence 4899999999665432122 2223332345 7888999999999999999999999876431
Q ss_pred ---------cee--eecc----------------------------------cCCCceeEEEEccCCCEEEEEEcccccc
Q 041215 66 ---------QRL--KAMS----------------------------------RCGQPIPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 66 ---------~~~--~~~~----------------------------------~h~~~v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
..+ ..+. .-.+-|++++.+|.+.++++|.+-+|..
T Consensus 1141 ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1141 RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE
Confidence 000 0000 1247889999999999999997766422
Q ss_pred ---------cccccCCCCCc-ceEEEEcCC
Q 041215 101 ---------GAENHNPATAK-TYIYLHLPQ 120 (136)
Q Consensus 101 ---------~~~~~~~~~~~-~~~~~~~~~ 120 (136)
...|.+|.... .++.++|..
T Consensus 1221 lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1221 LWDLRFRVPILSWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred EEEeecCceeecccCcccCCcceEEeeccC
Confidence 23677777333 556666654
No 244
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.0011 Score=52.00 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=56.0
Q ss_pred EEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc------ceeeeccc-CCCceeEEEEccCCCEEEEEEcc
Q 041215 24 FKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK------QRLKAMSR-CGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 24 l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~------~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
+.+|.+ -|+++-|+-++++|++|+.|..+++|++... +.+..... |...|.|++|+...+.+.+|..|
T Consensus 52 ~~~H~G-----CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 52 VREHTG-----CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhcc-----ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 345667 7899999999999999999999999998642 33443333 45899999999999999988776
Q ss_pred ccc
Q 041215 97 DWS 99 (136)
Q Consensus 97 d~~ 99 (136)
...
T Consensus 127 ~~V 129 (609)
T KOG4227|consen 127 GTV 129 (609)
T ss_pred cee
Confidence 653
No 245
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.06 E-value=0.003 Score=51.27 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=43.0
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~ 64 (136)
+|..||.|.+ ||...+....+ ...- .++.++|||+|..++.|+..|.+.+||+.-
T Consensus 276 lGC~DgSiiL--yD~~~~~t~~~--ka~~-----~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 276 LGCEDGSIIL--YDTTRGVTLLA--KAEF-----IPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEecCCeEEE--EEcCCCeeeee--eecc-----cceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 3788999988 88765533332 2333 678999999999999999999999999753
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.05 E-value=0.0035 Score=53.71 Aligned_cols=92 Identities=16% Similarity=0.044 Sum_probs=70.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-CceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-QPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~ 80 (136)
.|.|-++++|.+|...... -+.-+|.. +|+.+.|+|+ .+++++.|.+.++|+... ..+..+.+|. .-+..
T Consensus 193 ~SdDRsiRlW~i~s~~~~~-~~~fgHsa-----Rvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~ 263 (967)
T KOG0974|consen 193 VSDDRSIRLWPIDSREVLG-CTGFGHSA-----RVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWK 263 (967)
T ss_pred EecCcceeeeecccccccC-cccccccc-----eeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeE
Confidence 4778888886665543222 24446888 9999999998 999999999999997654 4455888884 77899
Q ss_pred EEEccCCCEEEEEEcccccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
++..+...+++|++.|.-.+..
T Consensus 264 ~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 264 IAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred EEEcCCceEEEeeccCcchhhh
Confidence 9999999999988777755433
No 247
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.0044 Score=48.69 Aligned_cols=91 Identities=13% Similarity=0.079 Sum_probs=70.4
Q ss_pred CceeceEEEEEeeC----CCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--
Q 041215 2 GSIEGRVGVHHLDD----SQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-- 74 (136)
Q Consensus 2 gs~dG~v~i~~~d~----~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-- 74 (136)
|..|-.+++|..|. ++.+++.... .|++ .|.|+.|....++|++|+.+++|.+.|+++.+.+..+...
T Consensus 74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~S-----NIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~ 148 (609)
T KOG4227|consen 74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRS-----NIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNN 148 (609)
T ss_pred cCCcceeeeechHHHHhhcCCCCceeccCcccc-----ceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCc
Confidence 56677788877764 3445554432 3567 9999999988899999999999999999998888777432
Q ss_pred CCceeEEEEccCCCEEEEEEccc
Q 041215 75 GQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+.|..+..+|....|++.+.+.
T Consensus 149 ~~~VY~m~~~P~DN~~~~~t~~~ 171 (609)
T KOG4227|consen 149 RGDVYHMDQHPTDNTLIVVTRAK 171 (609)
T ss_pred ccceeecccCCCCceEEEEecCc
Confidence 36999999999988888765544
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.02 E-value=0.0084 Score=47.71 Aligned_cols=60 Identities=10% Similarity=0.162 Sum_probs=42.4
Q ss_pred ceeEEEEeCCCCEEEEEcC-C--CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGS-D--GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~-d--g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.+....|+|+|+.|+..+. + ..|.+||+.++... .+......+....|+|+++.|+....
T Consensus 328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence 5667899999987665543 3 35889999887653 34333345678999999998775443
No 249
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.95 E-value=0.015 Score=44.18 Aligned_cols=90 Identities=8% Similarity=0.056 Sum_probs=52.4
Q ss_pred eceEEEEEeeCCCCc--ceeEEEeeeC--CCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCCCcceeeecccC---CC
Q 041215 5 EGRVGVHHLDDSQQS--KNFTFKCHRD--GSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKDSKQRLKAMSRC---GQ 76 (136)
Q Consensus 5 dG~v~i~~~d~~~~~--~~~~l~~h~~--~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~h---~~ 76 (136)
++.|.+|.++..++. ....+..... .... ....+.++|++++++++.. ++.|.+|++........+.++ ..
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~ 274 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR-WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET 274 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc-cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc
Confidence 577777666543332 2222222111 0001 2236889999998888754 678999998643211111121 23
Q ss_pred ceeEEEEccCCCEEEEEEc
Q 041215 77 PIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~ 95 (136)
....++|+|++++++++..
T Consensus 275 ~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 275 QPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred cCCceEECCCCCEEEEEEc
Confidence 4568999999998887654
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.95 E-value=0.01 Score=47.40 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=51.7
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEE-EEcCCCc--EEEEeCCCcceeeecccCCCceeEEE
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFA-TAGSDGA--FNFWDKDSKQRLKAMSRCGQPIPCST 82 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~-s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~ 82 (136)
|...||.+|..+++... +....+ ......|+|+|..|+ +.+.++. |.++|+.++.. ..+..+.......+
T Consensus 240 g~~~L~~~dl~tg~~~~-lt~~~g-----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~ 312 (448)
T PRK04792 240 RKAEIFVQDIYTQVREK-VTSFPG-----INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPS 312 (448)
T ss_pred CCcEEEEEECCCCCeEE-ecCCCC-----CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceE
Confidence 34445566665544321 222222 334689999997654 4555664 77778877654 44555555667889
Q ss_pred EccCCCEEEEEEc
Q 041215 83 FNTDGSIFAYSVC 95 (136)
Q Consensus 83 ~sp~~~~l~s~~~ 95 (136)
|+|+++.++..+.
T Consensus 313 wSpDG~~I~f~s~ 325 (448)
T PRK04792 313 WHPDGKSLIFTSE 325 (448)
T ss_pred ECCCCCEEEEEEC
Confidence 9999998776553
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.90 E-value=0.016 Score=45.37 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=58.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCCCcceeeecccC------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKDSKQRLKAMSRC------ 74 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~h------ 74 (136)
++.||.|.+ +|..+.+....++.- . ...+++++++|++++.+. ..+.+.++|.++.+.+..+...
T Consensus 54 ~~rdg~vsv--iD~~~~~~v~~i~~G-~-----~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~ 125 (369)
T PF02239_consen 54 ANRDGTVSV--IDLATGKVVATIKVG-G-----NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG 125 (369)
T ss_dssp EETTSEEEE--EETTSSSEEEEEE-S-S-----EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT
T ss_pred EcCCCeEEE--EECCcccEEEEEecC-C-----CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc
Confidence 456888877 899988888887643 2 457899999998877665 5788999999999888877543
Q ss_pred -CCceeEEEEccCCCEEEEEEcc
Q 041215 75 -GQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 75 -~~~v~~v~~sp~~~~l~s~~~d 96 (136)
...+..|-.+|....++.+..+
T Consensus 126 ~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 126 PESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp S---EEEEEE-SSSSEEEEEETT
T ss_pred cCCCceeEEecCCCCEEEEEEcc
Confidence 2456677778888866655443
No 252
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.87 E-value=0.004 Score=34.34 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=28.9
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR 67 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~ 67 (136)
.|.+++|+|...+|+.+..+|.|.++++ +++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 7899999999999999999999999998 5543
No 253
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0063 Score=50.03 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=53.5
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCcccee-EEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCceeEE
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVN-SLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPIPCS 81 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~-~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~~v 81 (136)
.+|.+.++.+. .+.+.++.-+.. .++ +++|.|||.+|+.|-.||+|++.|++++..++.+.. ...+|.++
T Consensus 40 ~~gelli~R~n---~qRlwtip~p~~-----~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~ 111 (665)
T KOG4640|consen 40 EKGELLIHRLN---WQRLWTIPIPGE-----NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKG 111 (665)
T ss_pred cCCcEEEEEec---cceeEeccCCCC-----ccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchhee
Confidence 34445443332 344555554555 776 999999999999999999999999999888776322 34778888
Q ss_pred EEcc
Q 041215 82 TFNT 85 (136)
Q Consensus 82 ~~sp 85 (136)
-|++
T Consensus 112 ~w~~ 115 (665)
T KOG4640|consen 112 IWDR 115 (665)
T ss_pred eccc
Confidence 8864
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.76 E-value=0.016 Score=45.20 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=53.0
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-CC--cEEEEeCCCcceeeecccCCCceeEE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-DG--AFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
+|...|+.+|..++.. ..+..+.. ......|+|++..|+..+. ++ .|.++++.++.. ..+..+...+..+
T Consensus 255 ~~~~~i~~~d~~~~~~-~~l~~~~~-----~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~ 327 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQL-TRLTNGPG-----IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASP 327 (417)
T ss_pred CCCccEEEEECCCCCE-EECCCCCC-----CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCe
Confidence 3444455666654432 22233333 4456789999987655443 34 477778776653 3444455667788
Q ss_pred EEccCCCEEEEEEccc
Q 041215 82 TFNTDGSIFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd 97 (136)
.|+|++.+++.+..+.
T Consensus 328 ~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 328 SWSPDGDLIAFVHREG 343 (417)
T ss_pred EECCCCCEEEEEEccC
Confidence 9999999888776543
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.75 E-value=0.026 Score=44.02 Aligned_cols=80 Identities=10% Similarity=-0.010 Sum_probs=57.9
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC----------CCcEEEEeCCCcceeeecccCC
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS----------DGAFNFWDKDSKQRLKAMSRCG 75 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~h~ 75 (136)
|+|.+ +|..+.+.+.++..-.. + ..+ ++|++..|+.+.. +..|.+||..+++.+.++.-..
T Consensus 27 ~~v~V--iD~~~~~v~g~i~~G~~-----P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYT--IDGEAGRVLGMTDGGFL-----P-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEE--EECCCCEEEEEEEccCC-----C-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 56666 89888888887764433 3 235 9999976655554 6889999999999887776422
Q ss_pred -------CceeEEEEccCCCEEEEEE
Q 041215 76 -------QPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 76 -------~~v~~v~~sp~~~~l~s~~ 94 (136)
.....++++|+|+++..+-
T Consensus 98 ~p~~~~~~~~~~~~ls~dgk~l~V~n 123 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPDNKTLLFYQ 123 (352)
T ss_pred CchhhccCccceEEECCCCCEEEEec
Confidence 2334789999999877654
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.71 E-value=0.0016 Score=58.95 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=58.4
Q ss_pred ceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 3 SIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 3 s~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
+.++++.+ ||.- .+.......+|.+ .++++++-|..++|++|+.+|.|.+||+...+..+.+..
T Consensus 2312 ~d~~n~~l--wDtl~~~~~s~v~~~H~~-----gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------- 2376 (2439)
T KOG1064|consen 2312 SDNRNVCL--WDTLLPPMNSLVHTCHDG-----GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------- 2376 (2439)
T ss_pred CCCCcccc--hhcccCcccceeeeecCC-----CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------
Confidence 45667777 6542 2222223389999 999999999999999999999999999998877776654
Q ss_pred EEccCCCEEEEEEcccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~ 100 (136)
+. ...++++|+..+..+
T Consensus 2377 -~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2377 -LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred -hh-hhheeeccCcccceE
Confidence 33 344666666655443
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.69 E-value=0.019 Score=45.26 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=42.2
Q ss_pred ceeEEEEeCCCCEEE-EEcCCC--cEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFA-TAGSDG--AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~-s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.+...+|+|+|..|+ +.+.++ .|.+||+.++.. ..+..+........|+|+++.++..+.
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~ 306 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSD 306 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEEC
Confidence 445689999997665 555555 588889887754 445555555677899999997776543
No 258
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.65 E-value=0.0059 Score=47.14 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=58.7
Q ss_pred CceeceEEEEEeeCCC-----CcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcce---eeecc
Q 041215 2 GSIEGRVGVHHLDDSQ-----QSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQR---LKAMS 72 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~-----~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~ 72 (136)
|...|.|-. +|.+. ++....|- |.+ .|+++..-. ++++|++.+-+|.|.+||.+..++ +.++.
T Consensus 270 GcRngeI~~--iDLR~rnqG~~~~a~rly-h~S-----svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe 341 (425)
T KOG2695|consen 270 GCRNGEIFV--IDLRCRNQGNGWCAQRLY-HDS-----SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE 341 (425)
T ss_pred cccCCcEEE--EEeeecccCCCcceEEEE-cCc-----chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee
Confidence 456677766 55542 34555544 788 888887766 668999999999999999987666 78888
Q ss_pred cCCCce--eEEEEccCCCEEEEEEccc
Q 041215 73 RCGQPI--PCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 73 ~h~~~v--~~v~~sp~~~~l~s~~~dd 97 (136)
+|...- .-+...+....+++ .+||
T Consensus 342 GHvN~~a~l~~~v~~eeg~I~s-~GdD 367 (425)
T KOG2695|consen 342 GHVNLSAYLPAHVKEEEGSIFS-VGDD 367 (425)
T ss_pred cccccccccccccccccceEEE-ccCe
Confidence 884222 22233455566665 4555
No 259
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.015 Score=49.11 Aligned_cols=85 Identities=19% Similarity=0.352 Sum_probs=56.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC-----CCEEEEEcCCCcEEEEeC---CCcceeeecc
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI-----HHTFATAGSDGAFNFWDK---DSKQRLKAMS 72 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~-----~~~l~s~~~dg~v~vwd~---~~~~~~~~~~ 72 (136)
+||.||.|.|... -+.....++. ... ++..++++|+ ...+++|+.-| +.++.= ..... ....
T Consensus 88 sCS~DGkv~I~sl--~~~~~~~~~d-f~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-v~l~ 157 (846)
T KOG2066|consen 88 SCSDDGKVVIGSL--FTDDEITQYD-FKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-VVLS 157 (846)
T ss_pred EecCCCcEEEeec--cCCccceeEe-cCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-eeee
Confidence 4789998888444 3334444432 344 8899999999 25788998888 655431 11111 2344
Q ss_pred cCCCceeEEEEccCCCEEEEEEccc
Q 041215 73 RCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 73 ~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
...++|++|.| .|.++|.+...+
T Consensus 158 ~~eG~I~~i~W--~g~lIAWand~G 180 (846)
T KOG2066|consen 158 EGEGPIHSIKW--RGNLIAWANDDG 180 (846)
T ss_pred cCccceEEEEe--cCcEEEEecCCC
Confidence 55699999999 788999886654
No 260
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.011 Score=46.53 Aligned_cols=82 Identities=11% Similarity=0.138 Sum_probs=64.4
Q ss_pred EEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc-ccc
Q 041215 23 TFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD-WSK 100 (136)
Q Consensus 23 ~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd-~~~ 100 (136)
.+..+.. .|..++|+|..+ ++..++.+..|.+.|+++..++..+..+ .++.+++|.-+...++.|+... ...
T Consensus 188 ~lp~~g~-----~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 188 ILPGEGS-----FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred cccccch-----hhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 4444555 889999999986 8889999999999999999888888888 8899999998887766665543 444
Q ss_pred cccccCCCCC
Q 041215 101 GAENHNPATA 110 (136)
Q Consensus 101 ~~~~~~~~~~ 110 (136)
-+++..|+.+
T Consensus 262 vyD~R~~~~~ 271 (463)
T KOG1645|consen 262 VYDMRQPEGP 271 (463)
T ss_pred EEEccCCCch
Confidence 5677766633
No 261
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.62 E-value=0.031 Score=42.68 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=61.1
Q ss_pred EEeeCCCCcceeEEEeeeCCCCccce--eEEEEeCCCCEEEEEcCC-----CcEEEEeCC-CcceeeecccCCCceeEEE
Q 041215 11 HHLDDSQQSKNFTFKCHRDGSEIYSV--NSLNFHPIHHTFATAGSD-----GAFNFWDKD-SKQRLKAMSRCGQPIPCST 82 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~~h~~~~~~~~v--~~l~~~p~~~~l~s~~~d-----g~v~vwd~~-~~~~~~~~~~h~~~v~~v~ 82 (136)
..||..+++....+....+ .- -.-.|+++|++|++.-.| |.|-+||.. ....+.+++.|.---+.+.
T Consensus 31 ~v~D~~~g~~~~~~~a~~g-----RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~ 105 (305)
T PF07433_consen 31 LVFDCRTGQLLQRLWAPPG-----RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELL 105 (305)
T ss_pred EEEEcCCCceeeEEcCCCC-----CEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEE
Confidence 3578888877776655333 22 246899999988887654 789999998 6677889998887778999
Q ss_pred EccCCCEEEEEEc
Q 041215 83 FNTDGSIFAYSVC 95 (136)
Q Consensus 83 ~sp~~~~l~s~~~ 95 (136)
+.|+++.|+.|-+
T Consensus 106 l~pDG~tLvVANG 118 (305)
T PF07433_consen 106 LMPDGETLVVANG 118 (305)
T ss_pred EcCCCCEEEEEcC
Confidence 9999988777633
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.60 E-value=0.017 Score=43.77 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=54.2
Q ss_pred CCceeceEEEEEeeCC-CCcceeE-EEeeeCCCCccceeEEEEeCC-CCEEEEEcCCCcEEEEeCCC-cceeeecccCCC
Q 041215 1 VGSIEGRVGVHHLDDS-QQSKNFT-FKCHRDGSEIYSVNSLNFHPI-HHTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQ 76 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~-~~~~~~~-l~~h~~~~~~~~v~~l~~~p~-~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~ 76 (136)
.|+.||.+.. ||.+ ++.-++. -+.|.. .|.+|.-+|. ...+++|+.|..|++||.++ ++.+..-. -.+
T Consensus 183 tGgDD~~l~~--~D~R~p~~~i~~n~kvH~~-----GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~G 254 (339)
T KOG0280|consen 183 TGGDDGSLSC--WDIRIPKTFIWHNSKVHTS-----GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGG 254 (339)
T ss_pred ecCCCceEEE--EEecCCcceeeecceeeec-----ceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-ccc
Confidence 3788999988 6666 3333333 456777 8888887654 47999999999999999984 45444332 225
Q ss_pred ceeEEEEccC
Q 041215 77 PIPCSTFNTD 86 (136)
Q Consensus 77 ~v~~v~~sp~ 86 (136)
.|..+..+|.
T Consensus 255 GVWRi~~~p~ 264 (339)
T KOG0280|consen 255 GVWRIKHHPE 264 (339)
T ss_pred ceEEEEecch
Confidence 6666666663
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.58 E-value=0.0032 Score=48.94 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=44.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 72 (136)
+..|+.|++..|... ...-.-+-+|+. -|..+++-++ ..|.++|-|++|++||+.+|.++.++.
T Consensus 169 aDRDEkIRvs~ypa~-f~IesfclGH~e-----FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 169 ADRDEKIRVSRYPAT-FVIESFCLGHKE-----FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ecCCceEEEEecCcc-cchhhhccccHh-----heeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 345677777555332 111122236888 8999999876 558899999999999999998876554
No 264
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.57 E-value=0.0013 Score=49.04 Aligned_cols=57 Identities=26% Similarity=0.534 Sum_probs=46.5
Q ss_pred CCceeceEEEEEeeCCCCc-ceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC
Q 041215 1 VGSIEGRVGVHHLDDSQQS-KNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~-~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~ 64 (136)
+|+.||.+.+ ||.+... +...++.|+. +++.+-|||.. ..|++++.||.+-.||..+
T Consensus 197 cgt~dg~~~l--~d~rn~~~p~S~l~ahk~-----~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGL--WDARNVAMPVSLLKAHKA-----EIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEE--EEcccccchHHHHHHhhh-----hhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 5889999998 5555433 3445678999 99999999987 7899999999999999874
No 265
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.56 E-value=0.0015 Score=52.18 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=58.6
Q ss_pred EEEeeeCCCCccceeEEEE-eCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 23 TFKCHRDGSEIYSVNSLNF-HPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 23 ~l~~h~~~~~~~~v~~l~~-~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
.+++|++.. .|.++-| -|...++++|++=|.|+||+-.+++.+.-+.+-...|+|+.-+|.-.+||+++-|
T Consensus 386 vYKGHrN~~---TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 386 VYKGHRNSR---TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGID 457 (559)
T ss_pred hhccccccc---ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCc
Confidence 378888744 3666666 6888999999988999999999999888888777799999999999999976443
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.55 E-value=0.031 Score=44.73 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=40.4
Q ss_pred ceeEEEEeCCCCEEEEEcC-CC--cEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGS-DG--AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
.+....|+|+|+.|+..+. ++ .|.+||+.++... .+....+.....+|+|+|+.++...
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVL 280 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEE
Confidence 7788999999987766543 33 5888898877542 2222223345789999999877643
No 267
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=0.0063 Score=52.24 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=62.7
Q ss_pred eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
..+|..|.. ..+|++|+-..++|+.|+..|.|++|++.+|.......+|.+.|+.|.-+-+|.+.++.+.+.
T Consensus 1094 w~~frd~~~-----~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1094 WRSFRDETA-----LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred chhhhcccc-----ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc
Confidence 345556666 889999999889999999999999999999999999999999999999999999877765533
No 268
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.53 E-value=0.0076 Score=51.60 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=57.9
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC---------CCcEEEEeCCCcceeeec
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS---------DGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~ 71 (136)
+|...|+|.+ -|.++.+..+++.+|.+ .|..++.+ |++|++|+. |..|++||+++...+.-+
T Consensus 192 ~G~t~G~V~L--rD~~s~~~iht~~aHs~-----siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 192 CGDTRGTVFL--RDPNSFETIHTFDAHSG-----SISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred eecccceEEe--ecCCcCceeeeeecccc-----ceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 3667788876 88899999999999999 88877664 789999985 566889999887666555
Q ss_pred ccCCCceeEEEEccCC
Q 041215 72 SRCGQPIPCSTFNTDG 87 (136)
Q Consensus 72 ~~h~~~v~~v~~sp~~ 87 (136)
.-+.++ .-+.|.|.-
T Consensus 263 ~~~~~P-~flrf~Psl 277 (1118)
T KOG1275|consen 263 QFPYGP-QFLRFHPSL 277 (1118)
T ss_pred ccccCc-hhhhhcccc
Confidence 444433 556677753
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.49 E-value=0.086 Score=39.72 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=43.1
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee-----eecccCCCceeEEEEccCCC
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL-----KAMSRCGQPIPCSTFNTDGS 88 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~-----~~~~~h~~~v~~v~~sp~~~ 88 (136)
.-.+.+|+.....++.+..||++.+||++..... .+-+.|.+.++.+.|++-|.
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 4568899998899999999999999999864222 23345889999999998665
No 270
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.016 Score=47.71 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=59.2
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee-EEEEccCCCEEEEEEcccccccccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP-CSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
.+-.+.|+|.-.++|.+..+|.|-+.++. .+.+.+++-++-.+. +++|.|||.++|.|-.|+-.+.++.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 56789999999999999999999999988 677888887877777 9999999999999988876555443
No 271
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.029 Score=46.00 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=63.5
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEe------eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKC------HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~------h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
+|+.||.+-. ||++......++.. |.+...--.|+++.|.-+|-.++.|.++|.+.|||+.+...+..- .|
T Consensus 192 ~Gt~~g~VEf--wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh 268 (703)
T KOG2321|consen 192 CGTEDGVVEF--WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DH 268 (703)
T ss_pred ecccCceEEE--ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-cc
Confidence 4778888876 88887666555543 222111114999999988999999999999999999987654332 34
Q ss_pred --CCceeEEEEccC--CCEEEEE
Q 041215 75 --GQPIPCSTFNTD--GSIFAYS 93 (136)
Q Consensus 75 --~~~v~~v~~sp~--~~~l~s~ 93 (136)
.-+|..+.|.+. +..+++.
T Consensus 269 ~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 269 GYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred CCccceeeecccccCCCceEEec
Confidence 468889999765 3455554
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.21 E-value=0.011 Score=53.87 Aligned_cols=98 Identities=12% Similarity=0.171 Sum_probs=69.9
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEee-eCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc--------------
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCH-RDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-------------- 65 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h-~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-------------- 65 (136)
.||.||.+++|+| ..+++...+..- .. .|+.+.|+.+|+.+..+..||.+.+|.....
T Consensus 2225 tgs~dgsv~~~~w--~~~~~v~~~rt~g~s-----~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~D 2297 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEW--GHGQQVVCFRTAGNS-----RVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSD 2297 (2439)
T ss_pred ecCCCceEEEEec--cCCCeEEEeeccCcc-----hhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccc
Confidence 4789999999888 555666666532 14 7888888888888888888888888854311
Q ss_pred -----------------------------ceeeecccCCCceeEEEEccCCCEEEEEEccccccccccc
Q 041215 66 -----------------------------QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 66 -----------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~ 105 (136)
..-.....|.+.+++++|.|..+++++|+.++....++..
T Consensus 2298 f~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2298 FRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred eeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence 0001113678889999999999999999888765554443
No 273
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.014 Score=45.15 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=54.2
Q ss_pred CceeceEEEEEeeCCCCc---ceeEEEeeeCCCCccceeEE--EEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--
Q 041215 2 GSIEGRVGVHHLDDSQQS---KNFTFKCHRDGSEIYSVNSL--NFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-- 74 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~---~~~~l~~h~~~~~~~~v~~l--~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-- 74 (136)
.+++|.|.+ ||.+-.+ ...++.+|-+ .-..+ -.++....++++++|...++|.+..+..+.+++..
T Consensus 317 S~M~gkikL--yD~R~~K~~~~V~qYeGHvN-----~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 317 SDMTGKIKL--YDLRATKCKKSVMQYEGHVN-----LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred ccCcCceeE--eeehhhhcccceeeeecccc-----cccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence 467898888 6665444 4777778765 33322 33455578999999999999999999888776543
Q ss_pred --CCceeEEEEcc
Q 041215 75 --GQPIPCSTFNT 85 (136)
Q Consensus 75 --~~~v~~v~~sp 85 (136)
...+.+++|..
T Consensus 390 ~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 390 ASEVDIPSVAFDS 402 (425)
T ss_pred cccccccceehhc
Confidence 34566777743
No 274
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.10 E-value=0.044 Score=46.86 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=43.2
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s 92 (136)
..+|++-..+ ..|+.|+.+|.|++||-......-.+++-+.||..|..+.||++++.
T Consensus 579 ~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 579 NFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred CceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 5667766665 45788999999999995433333456677899999999999997663
No 275
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.10 E-value=0.071 Score=42.47 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=35.9
Q ss_pred ceeEEEEeCCCCEEEEEc-CCC----cEEEEeCCCc---ceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAG-SDG----AFNFWDKDSK---QRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~-~dg----~v~vwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.....+|+|||+.|+..+ .+| .+..|++..+ ..........+.....+|+|||+.|+..+.
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC
Confidence 445679999997665443 233 3444666542 222222222234467899999998776653
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.08 E-value=0.11 Score=39.18 Aligned_cols=69 Identities=12% Similarity=0.020 Sum_probs=51.4
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeec-ccCCCceeEEEEccCCCEEEEEEccccccccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAM-SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~-~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
.+..+.+++++.++++.++...|.+|.+.+... +... ....+.-.+.+|+.....+|++..|++...++
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~D 231 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYD 231 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEE
Confidence 478899999999999999999999998875321 2211 12234457889999999999998888655443
No 277
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.07 E-value=0.02 Score=27.39 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=26.4
Q ss_pred ceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215 66 QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 66 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
.....+..|...|.++.|++.+.++++++.+..
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~ 35 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT 35 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCe
Confidence 345566678889999999999999998877664
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.0089 Score=48.97 Aligned_cols=62 Identities=19% Similarity=0.417 Sum_probs=47.7
Q ss_pred CCceeceEEEEEeeCC-----CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee
Q 041215 1 VGSIEGRVGVHHLDDS-----QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK 69 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~-----~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~ 69 (136)
.+|.|.+|.+|.+..+ +....++++.|+. +|..+.|-.+-+.++++ ||.|++||-.-+..+.
T Consensus 752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-----~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~La 818 (1034)
T KOG4190|consen 752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-----PIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLA 818 (1034)
T ss_pred eccCCceEEEEEeccccCccccceeeeEhhhccC-----cccceeeeeccceeeec--cCcceeecccccchhH
Confidence 3688999999888653 3456788889999 99999998887777554 6889999965554433
No 279
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=95.86 E-value=0.023 Score=45.60 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=36.2
Q ss_pred eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce
Q 041215 21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR 67 (136)
Q Consensus 21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~ 67 (136)
.+.|..|.+ -|+.+.|+..|..|++++.|..|.+||...+..
T Consensus 135 ~~kL~~H~G-----cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~ 176 (559)
T KOG1334|consen 135 QKKLNKHKG-----CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP 176 (559)
T ss_pred hhcccCCCC-----ccceeeecccCceeeccCccceEEeehhhccCc
Confidence 456778888 999999999999999999999999998765443
No 280
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.013 Score=50.84 Aligned_cols=67 Identities=22% Similarity=0.356 Sum_probs=51.4
Q ss_pred eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEE---ccCCCEEEEE
Q 041215 27 HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF---NTDGSIFAYS 93 (136)
Q Consensus 27 h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~---sp~~~~l~s~ 93 (136)
|.+.....+|++++|+.+|.++..|-.+|.|.+||+..+..++.+..|..+...+-+ ..++..+.++
T Consensus 124 ~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 124 HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEc
Confidence 443444559999999999999999999999999999999888888877766665543 3344455554
No 281
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.77 E-value=0.18 Score=38.80 Aligned_cols=84 Identities=13% Similarity=0.196 Sum_probs=57.2
Q ss_pred ceEEEEEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcC----CCcEEEEeCCC--cc--eeeecccCCC
Q 041215 6 GRVGVHHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGS----DGAFNFWDKDS--KQ--RLKAMSRCGQ 76 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~----dg~v~vwd~~~--~~--~~~~~~~h~~ 76 (136)
+.|.++.+|..+++....-. .-.. ....++++|++++|++... ++.|..|++.. +. .+.+......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~-----~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGE-----NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESS-----SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred CcEEEEEEcCCCCCceEeeeecCCC-----CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 67888888887766543322 2233 6678999999998888877 46788888765 32 3344443445
Q ss_pred ceeEEEEccCCCEEEEEE
Q 041215 77 PIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~ 94 (136)
....++++|++++++++.
T Consensus 88 ~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp CEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEecCCCEEEEEE
Confidence 556799999999988764
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.75 E-value=0.09 Score=42.48 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=58.3
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC----cEEEEeCCCcceeeecccCCCceeEE
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG----AFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg----~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
.+.-+|.+|..++.....=++..+ -|+...|||++++++-+--+| .|+++|+..++..... ...+--.+=
T Consensus 421 dr~el~vididngnv~~idkS~~~-----lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsP 494 (668)
T COG4946 421 DRFELWVIDIDNGNVRLIDKSEYG-----LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSP 494 (668)
T ss_pred CceEEEEEEecCCCeeEecccccc-----eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCc
Confidence 346678889988888777666677 899999999999999887776 4889999987654332 222333556
Q ss_pred EEccCCCEE
Q 041215 82 TFNTDGSIF 90 (136)
Q Consensus 82 ~~sp~~~~l 90 (136)
+|.|++++|
T Consensus 495 aFD~d~ryL 503 (668)
T COG4946 495 AFDPDGRYL 503 (668)
T ss_pred ccCCCCcEE
Confidence 788888753
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.70 E-value=0.037 Score=46.73 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=67.1
Q ss_pred CCceeceEEEEEeeCCC------C-------cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce
Q 041215 1 VGSIEGRVGVHHLDDSQ------Q-------SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR 67 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~------~-------~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~ 67 (136)
+|..||.+.+.-++..+ + ....++.+|.. .|--+.|+.+.+.|-+...+|.|.+|-+..+.-
T Consensus 31 cgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-----sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW 105 (1189)
T KOG2041|consen 31 CGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-----SVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW 105 (1189)
T ss_pred eccccceeEEEEccccCCcccccccccccccchhhhhccCcc-----eEEEEEeccccccccccCCCceEEEEeeecccH
Confidence 47788988886665421 1 12356778888 999999999999999999999999999887755
Q ss_pred eeeccc--CCCceeEEEEccCCCEEEEEEc
Q 041215 68 LKAMSR--CGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 68 ~~~~~~--h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.-++.. ..+.|.+|+|+.+|.-++..-.
T Consensus 106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe 135 (1189)
T KOG2041|consen 106 CEEMINNRNKSVVVSMSWNLDGTKICIVYE 135 (1189)
T ss_pred HHHHhhCcCccEEEEEEEcCCCcEEEEEEc
Confidence 444322 3578899999999886655433
No 284
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=95.65 E-value=0.12 Score=40.02 Aligned_cols=86 Identities=9% Similarity=0.188 Sum_probs=63.0
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCC
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGS 88 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~ 88 (136)
.+|+||.+..+....+. ... +|.+..|+|.-..|+.+.....+++|-.. |......+..+-.|..++|..+|.
T Consensus 343 alW~Wdlq~l~l~avLi-Qk~-----piraf~WdP~~prL~vctg~srLY~W~ps-g~~~V~vP~~GF~i~~l~W~~~g~ 415 (447)
T KOG4497|consen 343 ALWLWDLQNLKLHAVLI-QKH-----PIRAFEWDPGRPRLVVCTGKSRLYFWAPS-GPRVVGVPKKGFNIQKLQWLQPGE 415 (447)
T ss_pred eEEEEechhhhhhhhhh-hcc-----ceeEEEeCCCCceEEEEcCCceEEEEcCC-CceEEecCCCCceeeeEEecCCCc
Confidence 46788887665555543 456 89999999988666666555668889654 444444455567899999999999
Q ss_pred EEEEEEccccccc
Q 041215 89 IFAYSVCYDWSKG 101 (136)
Q Consensus 89 ~l~s~~~dd~~~~ 101 (136)
.++..+.|-|-..
T Consensus 416 ~i~l~~kDafc~a 428 (447)
T KOG4497|consen 416 FIVLCGKDAFCVA 428 (447)
T ss_pred EEEEEcCCceEEE
Confidence 9998888887644
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.64 E-value=0.2 Score=39.86 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=47.4
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCC--CcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSD--GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~d--g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
.||.+|..+++..... ...+ .....+|+|||. .+++.+.+ ..|.++|+..+. ...+..+........|+|
T Consensus 214 ~Iyv~dl~tg~~~~lt-~~~g-----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SP 286 (419)
T PRK04043 214 TLYKYNLYTGKKEKIA-SSQG-----MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVE 286 (419)
T ss_pred EEEEEECCCCcEEEEe-cCCC-----cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECC
Confidence 4555665554433322 2333 455678999996 44455444 357777877765 344444433334568999
Q ss_pred CCCEEEEEEc
Q 041215 86 DGSIFAYSVC 95 (136)
Q Consensus 86 ~~~~l~s~~~ 95 (136)
||+.++-.+.
T Consensus 287 DG~~I~F~Sd 296 (419)
T PRK04043 287 DDKRIVFVSD 296 (419)
T ss_pred CCCEEEEEEC
Confidence 9987666543
No 286
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.51 E-value=0.056 Score=44.24 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=43.9
Q ss_pred ceeEEEEeCCCCEEEEEcC---CCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGS---DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
..+.+.|+|.|++++.++. .|.+.++|+.-..+...-.......+.+.|.|.|++++++++
T Consensus 494 ~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 494 FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 4678999999998777654 577999998743332222222345688999999999998755
No 287
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.40 E-value=0.55 Score=36.16 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=54.4
Q ss_pred eeceEEEEEeeCCCCcc--eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCCC-cceeee---c-----
Q 041215 4 IEGRVGVHHLDDSQQSK--NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKDS-KQRLKA---M----- 71 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~--~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~-~~~~~~---~----- 71 (136)
.+|.|..+.++..++.. +........ ....++++|++.+|+.+.. +|.|.++++.. +..... +
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~-----~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~ 134 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGGS-----SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS 134 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSS-----CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCCC-----CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC
Confidence 35677776666653332 222222233 5678999999998888875 78899999876 432211 1
Q ss_pred -----ccCCCceeEEEEccCCCEEEEE
Q 041215 72 -----SRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 72 -----~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.......+++.|+|+++++.+.
T Consensus 135 g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 135 GPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp ESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred CCcccccccccceeEEECCCCCEEEEE
Confidence 1123567899999999977754
No 288
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.31 E-value=0.71 Score=35.81 Aligned_cols=84 Identities=12% Similarity=0.163 Sum_probs=56.8
Q ss_pred eceEEEEEeeCCCCcceeEEEe--eeCCCCccceeEEEEeCCCCEEEEEcCC-CcEEEEeCCC-cce--eeecccCCCc-
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKC--HRDGSEIYSVNSLNFHPIHHTFATAGSD-GAFNFWDKDS-KQR--LKAMSRCGQP- 77 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~--h~~~~~~~~v~~l~~~p~~~~l~s~~~d-g~v~vwd~~~-~~~--~~~~~~h~~~- 77 (136)
+|.|..+.+|..++.....-.. -.. +.+.+++++++++|++++.. |.|.++-+.+ |.. ..+...|.+.
T Consensus 63 ~ggvaay~iD~~~G~Lt~ln~~~~~g~-----~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~ 137 (346)
T COG2706 63 EGGVAAYRIDPDDGRLTFLNRQTLPGS-----PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG 137 (346)
T ss_pred cCcEEEEEEcCCCCeEEEeeccccCCC-----CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCC
Confidence 6777777777765544332211 122 45889999999999999875 6799988754 432 1222344444
Q ss_pred ---------eeEEEEccCCCEEEEE
Q 041215 78 ---------IPCSTFNTDGSIFAYS 93 (136)
Q Consensus 78 ---------v~~v~~sp~~~~l~s~ 93 (136)
++++.|+|++++|++.
T Consensus 138 p~~rQ~~~h~H~a~~tP~~~~l~v~ 162 (346)
T COG2706 138 PHERQESPHVHSANFTPDGRYLVVP 162 (346)
T ss_pred CCccccCCccceeeeCCCCCEEEEe
Confidence 8999999999988865
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.016 Score=47.61 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=56.4
Q ss_pred eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-------cceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-------KQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
+..|.+|+. .|..+.---+.+-+++++.|.+|++|.+.. ..+..++..|..+|+.+.|-.+-++++++
T Consensus 728 L~nf~GH~~-----~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQE-----KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eecccCcHH-----HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence 455677887 787776665667889999999999999763 23566788999999999999999999976
Q ss_pred Ec
Q 041215 94 VC 95 (136)
Q Consensus 94 ~~ 95 (136)
.+
T Consensus 803 D~ 804 (1034)
T KOG4190|consen 803 DG 804 (1034)
T ss_pred cC
Confidence 54
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.066 Score=42.21 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=52.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc-eeeeccc--CCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ-RLKAMSR--CGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~-~~~~~~~--h~~~ 77 (136)
+|.+..|.| +|.++.....++..+ . .+++++|.-+. +++.+|...|.|.+||+.... .+.++.+ ...+
T Consensus 212 asl~nkiki--~dlet~~~vssy~a~-~-----~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~p 283 (463)
T KOG1645|consen 212 ASLGNKIKI--MDLETSCVVSSYIAY-N-----QIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINP 283 (463)
T ss_pred eccCceEEE--Eecccceeeeheecc-C-----CceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCc
Confidence 566666766 888777776666666 5 89999998877 789999999999999997532 2333333 2345
Q ss_pred eeEEEEc
Q 041215 78 IPCSTFN 84 (136)
Q Consensus 78 v~~v~~s 84 (136)
|..|+.-
T Consensus 284 v~~i~~~ 290 (463)
T KOG1645|consen 284 VHKIAPV 290 (463)
T ss_pred ceeeccc
Confidence 6655553
No 291
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.04 E-value=0.43 Score=39.05 Aligned_cols=60 Identities=15% Similarity=0.234 Sum_probs=44.2
Q ss_pred ceeEEEEeCCCCEE-EEEcCC-CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTF-ATAGSD-GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l-~s~~~d-g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
+|.++.|+|+++.+ ++-+.. ..+.|||++ +..+..+ ..++-+++-|+|.|++++.|+-++
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCC
Confidence 99999999999544 444443 468888876 3445444 346779999999999999886655
No 292
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.98 E-value=0.24 Score=38.23 Aligned_cols=81 Identities=10% Similarity=0.009 Sum_probs=50.7
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--------------
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-------------- 74 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-------------- 74 (136)
.++++|..+++....... .. .+....|+|+|+.++-.. ++.|.+++..++... ++...
T Consensus 24 ~y~i~d~~~~~~~~l~~~-~~-----~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 24 DYYIYDIETGEITPLTPP-PP-----KLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEETTTTEEEESS-E-ET-----TBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-ESES--TTTEEESB--HHH
T ss_pred eEEEEecCCCceEECcCC-cc-----ccccceeecCCCeeEEEe-cCceEEEECCCCCeE-EeccccceeEEcCccceec
Confidence 345577766443333222 45 788999999998887775 467999887766433 22111
Q ss_pred ----CCceeEEEEccCCCEEEEEEccc
Q 041215 75 ----GQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 75 ----~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
-+.-..+.|||+++.||...-|+
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred cccccccccceEECCCCCEEEEEEECC
Confidence 12335789999999999887766
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.98 E-value=0.54 Score=35.46 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=26.2
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCC
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKD 63 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~ 63 (136)
.-..++|+||+.+|+.+.+.|+|++||+.
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~ 73 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLM 73 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecc
Confidence 35689999999999999999999999975
No 294
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.12 Score=43.89 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=42.1
Q ss_pred eCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC-----CCEEEEEEcc
Q 041215 42 HPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD-----GSIFAYSVCY 96 (136)
Q Consensus 42 ~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~-----~~~l~s~~~d 96 (136)
..+|.++++|+.||.|.+..+.+.+...++ ....++.+|+++|+ .+.+++|+.-
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~a 138 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMA 138 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcc
Confidence 345899999999999999988887766655 34579999999997 3466666554
No 295
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.71 E-value=0.29 Score=42.39 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=53.6
Q ss_pred eeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEE
Q 041215 13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s 92 (136)
+|.++.+......-..+ .|.=++ .+++++++|...|.|.+-|..+-+.++++..|.+.|.. |+-+|.+|++
T Consensus 162 ~Dl~~~~e~r~~~v~a~-----~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLit 232 (1118)
T KOG1275|consen 162 IDLNTEKETRTTNVSAS-----GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLIT 232 (1118)
T ss_pred eecccceeeeeeeccCC-----ceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEE
Confidence 45555554444433333 344443 35689999999999999999999999999999998876 4558988887
Q ss_pred EE
Q 041215 93 SV 94 (136)
Q Consensus 93 ~~ 94 (136)
++
T Consensus 233 CG 234 (1118)
T KOG1275|consen 233 CG 234 (1118)
T ss_pred ee
Confidence 64
No 296
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.62 E-value=0.074 Score=45.82 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=49.3
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.+.+++|||..-.|+.+=..|.+.+|...+.+.-.....|..+|.-+.|||+|..+.++
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~ 119 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTL 119 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEc
Confidence 45689999987788888788999999988776544455789999999999999998875
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.35 E-value=0.1 Score=39.29 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=33.5
Q ss_pred cceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc
Q 041215 34 YSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 34 ~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 72 (136)
+-|..|+++|+|.+|++...+|.|.+|++.+........
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 378999999999999999999999999998766555443
No 298
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.26 E-value=1.2 Score=34.50 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=54.4
Q ss_pred ceEEEEEeeCCCCcce-eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCC--cce--eeecccCCCc
Q 041215 6 GRVGVHHLDDSQQSKN-FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDS--KQR--LKAMSRCGQP 77 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~-~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~--~~~--~~~~~~h~~~ 77 (136)
.-|..|.+|..+++.. -.+-...+ .++-|+|+|+++.|.++..+ |.|-.|.++. |.. +........+
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~-----nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~ 90 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELG-----NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP 90 (346)
T ss_pred CceEEEEEeCcccccchhhhccccC-----CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence 3466677775544332 22334556 88999999999888888765 5566665553 543 2333333455
Q ss_pred eeEEEEccCCCEEEEE
Q 041215 78 IPCSTFNTDGSIFAYS 93 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~ 93 (136)
-..|++++++++++++
T Consensus 91 p~yvsvd~~g~~vf~A 106 (346)
T COG2706 91 PCYVSVDEDGRFVFVA 106 (346)
T ss_pred CeEEEECCCCCEEEEE
Confidence 5889999999999976
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.18 E-value=0.25 Score=38.15 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=42.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
++.||.+.. +|..+++.+........ . ....... .+..++.++.+|.|.++|..+++.+..+..+...+
T Consensus 285 ~~~~G~l~~--~d~~tG~~~W~~~~~~~--~--~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 285 TDADGVVVA--LDRRSGSELWKNDELKY--R--QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred ECCCCeEEE--EECCCCcEEEccccccC--C--ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 345666654 77777766655422111 0 1112222 35688888999999999999999888776655433
No 300
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.78 E-value=0.45 Score=38.11 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=54.2
Q ss_pred EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCc--EEEEeCCCcceeeecccCCCceeEEEEccC
Q 041215 10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGA--FNFWDKDSKQRLKAMSRCGQPIPCSTFNTD 86 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~ 86 (136)
++++|..++.....+. ..+ .-..-+|+|+|+ ++++...|+. |.+.|+..+.. ..+..-.+.-..=.|+|+
T Consensus 220 i~~~~l~~g~~~~i~~-~~g-----~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spd 292 (425)
T COG0823 220 IYYLDLNTGKRPVILN-FNG-----NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPD 292 (425)
T ss_pred EEEEeccCCccceeec-cCC-----ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCC
Confidence 4455655554444433 222 334678999995 6667777776 55667766553 233332233335679999
Q ss_pred CCEEEEEEcccccccccccCCC
Q 041215 87 GSIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 87 ~~~l~s~~~dd~~~~~~~~~~~ 108 (136)
|+.++-.++..+....-...++
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~ 314 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLE 314 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCC
Confidence 9998888776665544333333
No 301
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.75 E-value=0.12 Score=43.34 Aligned_cols=61 Identities=5% Similarity=0.015 Sum_probs=45.3
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc---eeeec---ccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ---RLKAM---SRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~---~~~~~---~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.+..++++++..+++.|+..|.|.++.+..+. .+..- ..|...|+|++|++++..+.+|.+
T Consensus 78 ~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~ 144 (726)
T KOG3621|consen 78 ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS 144 (726)
T ss_pred eEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCC
Confidence 45667888888888899889999988776532 12211 236789999999999998887644
No 302
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.73 E-value=1.5 Score=34.90 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=40.2
Q ss_pred ceeEEEEeCCCCE-EEEEcC---CCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHT-FATAGS---DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~-l~s~~~---dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
......|+|+|+. ++-.+. ...|.++|+.+++... +....+......|+|||+.++....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEc
Confidence 5567899999963 553333 3468888998876533 3234455667889999987665443
No 303
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.71 E-value=1.6 Score=38.88 Aligned_cols=62 Identities=6% Similarity=-0.008 Sum_probs=45.3
Q ss_pred eeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc-------------cCCCceeEEEEccCCCEEEEEEccc
Q 041215 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS-------------RCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 36 v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------------~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
..++++.++|..+++-..++.|++||..++....... +.......|+++++|+++++-..+.
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 4588999999988888889999999998765432111 1123567899999999877654444
No 304
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.50 E-value=0.35 Score=35.53 Aligned_cols=91 Identities=10% Similarity=0.008 Sum_probs=56.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEE-EEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-Cce
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSL-NFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-QPI 78 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l-~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-~~v 78 (136)
||+.||.|.++.+... +........-.. .+.++ .-..++.+..++..++.|+.|++.-.+.+.....|. .++
T Consensus 75 vG~~dg~v~~~n~n~~-g~~~d~~~s~~e-----~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLE-GAHSDRVCSGEE-----SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred eecccceEEEecCCcc-chHHHhhhcccc-----cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 5788888888666422 122211122222 33332 223334578888899999999998887777666676 666
Q ss_pred eEEEEccCCCEEEEE--Eccc
Q 041215 79 PCSTFNTDGSIFAYS--VCYD 97 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~--~~dd 97 (136)
.....+..+++++.+ +.+.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~ 169 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDR 169 (238)
T ss_pred ceeEEecCCceEEeeccccch
Confidence 666667777777766 4444
No 305
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=93.35 E-value=0.72 Score=36.07 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=45.9
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEc-CCCcEEEEeCCCcceeeec
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAG-SDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~-~dg~v~vwd~~~~~~~~~~ 71 (136)
.++.+|..+.+....+.. .. .+..++++|++. +|+..+ .++.|.++|..+++.+..+
T Consensus 280 ~V~ViD~~t~kvi~~i~v-G~-----~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIEL-GH-----EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEECCCCeEEEEEeC-CC-----ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 456699988888887763 34 788999999998 777666 5788999999999888776
No 306
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=93.35 E-value=0.84 Score=40.09 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=47.7
Q ss_pred cceeEEEEeCCCCEEEEEcCCCcEEEE----eCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215 34 YSVNSLNFHPIHHTFATAGSDGAFNFW----DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 34 ~~v~~l~~~p~~~~l~s~~~dg~v~vw----d~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
..|.++.|-++...++.+..+|.|.+. +..+... -..-.....|.+++||||+.+++...+++-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~ 143 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGN 143 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCE
Confidence 378899999999888889899998888 4433321 111123578999999999999988877653
No 307
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=93.26 E-value=0.72 Score=39.58 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=59.6
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC----CEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH----HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~----~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
...|.|.+ +|........-+..|.. ++..++|-+.. .+|+.-....++-+|+..+|...-.+.......
T Consensus 86 D~~GrIil--~d~~~~s~~~~l~~~~~-----~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 86 DISGRIIL--VDFVLASVINWLSHSND-----SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred cccCcEEE--EEehhhhhhhhhcCCCc-----chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 34455554 77676666666666666 88888886543 467777777889999999998877666555677
Q ss_pred eEEEEccC-CCEEEEEEccc
Q 041215 79 PCSTFNTD-GSIFAYSVCYD 97 (136)
Q Consensus 79 ~~v~~sp~-~~~l~s~~~dd 97 (136)
.|+.+.|- .+.+..-+..+
T Consensus 159 s~f~~DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKG 178 (1062)
T ss_pred eeeeeCCCCcceEEEEccCc
Confidence 78888883 34443333333
No 308
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.11 E-value=0.95 Score=34.64 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=55.6
Q ss_pred EeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC-----CcEEEEeCCCc-ceeeecccCCCceeEEEEcc
Q 041215 12 HLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD-----GAFNFWDKDSK-QRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 12 ~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d-----g~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp 85 (136)
.||........++....+ .|= --.=.|||+|.+|...-.| |.|-+||...+ +.+.+++.|.---+.|.+.+
T Consensus 95 vfD~~~~~~pv~~~s~~~-RHf--yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~ 171 (366)
T COG3490 95 VFDPNGAQEPVTLVSQEG-RHF--YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA 171 (366)
T ss_pred EECCCCCcCcEEEecccC-cee--ecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence 466655555544443222 000 1123689999888776654 77999999864 55778999987789999999
Q ss_pred CCCEEEEEEc
Q 041215 86 DGSIFAYSVC 95 (136)
Q Consensus 86 ~~~~l~s~~~ 95 (136)
||+.++.+.+
T Consensus 172 DGrtlvvanG 181 (366)
T COG3490 172 DGRTLVVANG 181 (366)
T ss_pred CCcEEEEeCC
Confidence 9999887644
No 309
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.02 E-value=2.9 Score=31.27 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=42.0
Q ss_pred eEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215 37 NSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN 84 (136)
Q Consensus 37 ~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 84 (136)
..++....|.+++++-..+.|...|..+|+.+.++.-...+|+|+||.
T Consensus 215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 456667778888888888999999999999999998889999999995
No 310
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.97 E-value=0.2 Score=42.76 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=57.0
Q ss_pred eeCCCCcceeEEEeeeCCCCccceeEEEEeCCC------------CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH------------HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~------------~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
.|..+.+.+.++.-|.. .|+.+.|.|-- -.|+++.-.|.|-+||+..+..+..+..|.+++..
T Consensus 40 VDs~s~q~iqsie~h~s-----~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qd 114 (1062)
T KOG1912|consen 40 VDSRSLQLIQSIELHQS-----AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQD 114 (1062)
T ss_pred EehhhhhhhhccccCcc-----ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhh
Confidence 67777788888888888 99999997643 14667777899999999999888999999999999
Q ss_pred EEEcc
Q 041215 81 STFNT 85 (136)
Q Consensus 81 v~~sp 85 (136)
++|-+
T Consensus 115 l~W~~ 119 (1062)
T KOG1912|consen 115 LCWVP 119 (1062)
T ss_pred eeeee
Confidence 99975
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.90 E-value=2.6 Score=30.48 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=43.4
Q ss_pred eeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc-cCC-CEEEEE
Q 041215 36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN-TDG-SIFAYS 93 (136)
Q Consensus 36 v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-p~~-~~l~s~ 93 (136)
...+++..+|+++++....+.|.+++.+ |+.+..+......+++++|. ++. .+++|.
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 6789999999988888788899999987 88777776665689999994 554 455553
No 312
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.89 E-value=0.43 Score=40.10 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=49.1
Q ss_pred CceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc----ceeeecccCCC
Q 041215 2 GSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK----QRLKAMSRCGQ 76 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~h~~ 76 (136)
|+..|.|.+....... ..+.+.-.++. .|...|++++|++++..|++|...|.|.+-.+... ...+.+....+
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~--~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDK--SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccc--cCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 6677888885554321 12222222222 13348999999999999999999999988776652 11223333345
Q ss_pred ceeEEEEc
Q 041215 77 PIPCSTFN 84 (136)
Q Consensus 77 ~v~~v~~s 84 (136)
.|-.+.+.
T Consensus 172 ~IVQlD~~ 179 (726)
T KOG3621|consen 172 EIVQLDYL 179 (726)
T ss_pred ceEEeecc
Confidence 55555553
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.80 E-value=2.7 Score=30.40 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=46.7
Q ss_pred eeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC--------CcEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215 13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD--------GAFNFWDKDSKQRLKAMSRCGQPIPCSTFN 84 (136)
Q Consensus 13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d--------g~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 84 (136)
+|..+++....+............+.+++.|+|+++++.... |.|..++.. +.. ..+...-...+.|+|+
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s 142 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFS 142 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEEC
Confidence 466665444443331111122367899999999988887654 446666665 433 2222333556899999
Q ss_pred cCCCEEEEEE
Q 041215 85 TDGSIFAYSV 94 (136)
Q Consensus 85 p~~~~l~s~~ 94 (136)
|+++.|..+.
T Consensus 143 ~dg~~lyv~d 152 (246)
T PF08450_consen 143 PDGKTLYVAD 152 (246)
T ss_dssp TTSSEEEEEE
T ss_pred Ccchheeecc
Confidence 9998766543
No 314
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.02 E-value=0.28 Score=41.76 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=50.5
Q ss_pred CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc-ceeeecccCCCceeEEEEcc-CCCEEEEE
Q 041215 17 QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPCSTFNT-DGSIFAYS 93 (136)
Q Consensus 17 ~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp-~~~~l~s~ 93 (136)
....-+.+.+|.. .|+.+.|+|+. ..+++++.|-.+..||+.+- ..+..+..-...-..|.|+- ++..+|+.
T Consensus 103 ~~aIef~lhghsr-----aitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSR-----AITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred ccceEEEEecCcc-----ceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 4556677889999 99999999988 68999999999999999863 23333333334445666764 33344443
No 315
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=91.82 E-value=0.2 Score=40.56 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=47.4
Q ss_pred CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEE
Q 041215 32 EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 32 ~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s 92 (136)
++.++..++|+|.|.+|++....+ |.+|....+..+.++ .| ..|..+.|+|.+.+|.+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~-~~-~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF-RH-PDVKYLDFSPNEKYLVT 88 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeee-ec-CCceecccCcccceeee
Confidence 555899999999999998887766 899998877655555 33 57899999999999987
No 316
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=91.68 E-value=0.35 Score=39.86 Aligned_cols=59 Identities=14% Similarity=0.283 Sum_probs=46.5
Q ss_pred CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 32 EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 32 ~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
++..-+-+.|+|.|.+|++--..| |.+|--.+-..++.| .| ..|.-+.|||..++|+|=
T Consensus 209 enWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~H-p~Vq~idfSP~EkYLVT~ 267 (698)
T KOG2314|consen 209 ENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YH-PGVQFIDFSPNEKYLVTY 267 (698)
T ss_pred hcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cC-CCceeeecCCccceEEEe
Confidence 344456899999999999998877 888977665555655 34 468899999999999974
No 317
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.48 E-value=1.2 Score=23.98 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=24.8
Q ss_pred ceeEEEEeCCC---CEEEEEcCCCcEEEEeCCC
Q 041215 35 SVNSLNFHPIH---HTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 35 ~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~ 64 (136)
+|.++.|+|.. .+|+-.-..+.|.++|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 68899999755 4788887789999999985
No 318
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.43 E-value=0.56 Score=37.53 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=51.4
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCE-EEEEcCCCc--EEEEeCCCcceeeecccCCCcee
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHT-FATAGSDGA--FNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~-l~s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
..||...|+.+|........ +..-.+ .-..=+|+|+|+. +++.+..|. |.+.+.+.... ..+......-.
T Consensus 257 ~rdg~~~iy~~dl~~~~~~~-Lt~~~g-----i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLPR-LTNGFG-----INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred CCCCCccEEEEcCCCCccee-cccCCc-----cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 56788888888887555222 332222 2235689999964 555555666 44445554433 33333322223
Q ss_pred EEEEccCCCEEEEEE
Q 041215 80 CSTFNTDGSIFAYSV 94 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~ 94 (136)
+-.|+|+|++++..+
T Consensus 330 ~p~~SpdG~~i~~~~ 344 (425)
T COG0823 330 NPVWSPDGDKIVFES 344 (425)
T ss_pred CccCCCCCCEEEEEe
Confidence 778999999888766
No 319
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.24 E-value=2.1 Score=32.49 Aligned_cols=70 Identities=11% Similarity=-0.006 Sum_probs=46.8
Q ss_pred EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215 11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
+.++.+++.+...|..... -=......+++.++.+++.|+..+..|..+..++.......+...+=+++|
T Consensus 76 Yfl~~~tGs~~w~f~~~~~-----vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILET-----VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred EEEEecchhheeeeeehhh-----hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 4467788888877765443 112334467889999999999999999998877766543333333333444
No 320
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.05 E-value=1 Score=36.34 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215 45 HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 45 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
|.+|...+.+ .|.+||..++..+.++... +|..|.|++++.+++..+.+..
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeE
Confidence 6766666544 7999999999988888533 4899999999999998876653
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.89 E-value=4.2 Score=31.24 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=55.5
Q ss_pred eceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC------------------CCcEEEEeCCCc
Q 041215 5 EGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS------------------DGAFNFWDKDSK 65 (136)
Q Consensus 5 dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~------------------dg~v~vwd~~~~ 65 (136)
.|.|-+ ||.. ....+..|..|.- ....+.+.|++..|+.+.- +..+-+.|..+|
T Consensus 76 ~G~IgV--yd~~~~~~ri~E~~s~GI-----GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 76 RGVIGV--YDAARGYRRIGEFPSHGI-----GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred cEEEEE--EECcCCcEEEeEecCCCc-----ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 455555 7776 5566666766655 6678999999976666651 234445566777
Q ss_pred ceeee--c--ccCCCceeEEEEccCCCEEEE
Q 041215 66 QRLKA--M--SRCGQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 66 ~~~~~--~--~~h~~~v~~v~~sp~~~~l~s 92 (136)
..+.+ + ..|.-.|..++++++|..++.
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a 179 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFA 179 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCCcEEEE
Confidence 77655 4 236678999999999977663
No 322
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.87 E-value=2.4 Score=30.79 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=39.6
Q ss_pred EeCCCCEEEEEcCCCcEEEEeCCCcceeeec-------c-------cCCCceeEEEEccCCCEEEEEE
Q 041215 41 FHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-------S-------RCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 41 ~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-------~-------~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
+...+++|++...+|.+++||+.++..+... . .....|..+.++.+|.-+++-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 4556788999999999999999987654322 1 2446778888888887666543
No 323
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=90.60 E-value=3.7 Score=33.62 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=36.6
Q ss_pred ceeEEEEeCCCCEEEEEc--CCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFATAG--SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
+|...+|.|.+..++..+ ..-.+.++|+... ..+-+ ....=+.+.|+|.+++++.++-+.
T Consensus 276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCc
Confidence 899999999996555544 3456778887654 32222 223335556666666666554443
No 324
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.47 E-value=6.1 Score=29.74 Aligned_cols=93 Identities=11% Similarity=0.165 Sum_probs=58.5
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc----------
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR---------- 73 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~---------- 73 (136)
.||+=.++.+|+.+.+....+.......+...++.+-|. +|..++-.=....|-..|..+|.++..+..
T Consensus 145 SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~ 223 (264)
T PF05096_consen 145 SDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRD 223 (264)
T ss_dssp E-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTST
T ss_pred ECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccccc
Confidence 478888888999888777777765544444467778887 567777776677777789999987754421
Q ss_pred --C---CCceeEEEEccCC-CEEEEEEccc
Q 041215 74 --C---GQPIPCSTFNTDG-SIFAYSVCYD 97 (136)
Q Consensus 74 --h---~~~v~~v~~sp~~-~~l~s~~~dd 97 (136)
. .+..+.|+|.|.. ++++||--+.
T Consensus 224 ~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp 253 (264)
T PF05096_consen 224 KSRQPDDDVLNGIAYDPETDRLFVTGKLWP 253 (264)
T ss_dssp TST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred ccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence 1 3567999998765 5677764443
No 325
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.46 E-value=0.15 Score=42.57 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=59.4
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcC----CCcEEEEeCCCc--ce--eeec
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGS----DGAFNFWDKDSK--QR--LKAM 71 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~----dg~v~vwd~~~~--~~--~~~~ 71 (136)
||+.+|.|.+..+...-.........+.. .+++++|++.. ..|+.|-. |..+.+||+.++ .. ...|
T Consensus 75 vG~atG~I~l~s~r~~hdSs~E~tp~~ar-----~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 75 VGSATGNISLLSVRHPHDSSAEVTPGYAR-----PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hccccCceEEeecCCcccccceecccccc-----cccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 68889999985553322222334456777 89999998875 55555532 466999999876 11 1223
Q ss_pred cc-CCCceeEEEEccCCCEEEEEEcc
Q 041215 72 SR-CGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 72 ~~-h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
.. .....++++|-.+.+++.+|...
T Consensus 150 s~~~l~gqns~cwlrd~klvlaGm~s 175 (783)
T KOG1008|consen 150 SSSTLDGQNSVCWLRDTKLVLAGMTS 175 (783)
T ss_pred ccccccCccccccccCcchhhccccc
Confidence 23 33556688998888888887554
No 326
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.40 E-value=2 Score=35.46 Aligned_cols=63 Identities=13% Similarity=0.268 Sum_probs=46.3
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
...|.+-..+ .+++.|+.+|.|++||-...+..-.+++-+.+|..|..+.+|.+++ |.++.|.
T Consensus 432 nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyL 494 (644)
T KOG2395|consen 432 NFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYL 494 (644)
T ss_pred ccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE-EecccEE
Confidence 4555555544 5688899999999999744444556788899999999999999876 3444443
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.36 E-value=1.5 Score=31.16 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=41.5
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR 73 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 73 (136)
+|+|.. +|..+++.+.....-.. .....+. ..+++..++.++.++.|..||..+|+.+-++..
T Consensus 2 ~g~l~~--~d~~tG~~~W~~~~~~~---~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 2 DGTLSA--LDPRTGKELWSYDLGPG---IGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp TSEEEE--EETTTTEEEEEEECSSS---CSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred CCEEEE--EECCCCCEEEEEECCCC---CCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec
Confidence 577766 99999999888754111 0011111 223456677778889999999999988765543
No 328
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.99 E-value=0.71 Score=25.25 Aligned_cols=24 Identities=8% Similarity=0.118 Sum_probs=20.2
Q ss_pred CCceeEEEEccCCCEEEEEEcccc
Q 041215 75 GQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
...|.+++|+|...++|.+..++-
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~ 34 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE 34 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe
Confidence 357899999999999999877653
No 329
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=89.91 E-value=1.3 Score=34.62 Aligned_cols=68 Identities=21% Similarity=0.379 Sum_probs=45.2
Q ss_pred CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee---cccC-----CCceeEEEEccCCC-EEEEEEcccc
Q 041215 30 GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA---MSRC-----GQPIPCSTFNTDGS-IFAYSVCYDW 98 (136)
Q Consensus 30 ~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~---~~~h-----~~~v~~v~~sp~~~-~l~s~~~dd~ 98 (136)
..|.|.|++++++.|+..+.++ +|-.|.+|+++-...... +..+ .-.|++..|+|... +++.+++-+-
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 6677899999999999888776 567799999864322222 2222 34677888888654 5555544433
No 330
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.86 E-value=2.7 Score=32.78 Aligned_cols=64 Identities=9% Similarity=0.200 Sum_probs=45.3
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEE-cCCCcEEEEeCCCcceeeecccC
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATA-GSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~-~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
|+---||.+|..+++.+..+.. .. ++.+|..+.+.. +|++. ..++.|.+||..+|+.+..+.+-
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l-~~-----~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPL-EH-----PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEE-EE-----EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CCceEEEEEECCCCeEEEEEeC-CC-----ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 3445679999999999888763 34 677999998884 66554 45789999999999888777543
No 331
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=89.24 E-value=1.9 Score=33.71 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=59.8
Q ss_pred CceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC----CcceeeecccCCC
Q 041215 2 GSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD----SKQRLKAMSRCGQ 76 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~----~~~~~~~~~~h~~ 76 (136)
.|.|.++++|+=.... .++. ...-... +++++.+++....|+.+-..|.+.-+.+. ....+..+..|.+
T Consensus 42 ~s~drtvrv~lkrds~q~wps-I~~~mP~-----~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~ 115 (404)
T KOG1409|consen 42 VSEDRTVRVWLKRDSGQYWPS-IYHYMPS-----PCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQA 115 (404)
T ss_pred ccccceeeeEEeccccccCch-hhhhCCC-----CceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhc
Confidence 4667777775432211 1111 1112345 88999999999999999888988877543 3344556678899
Q ss_pred ceeEEEEccCCCEEEEEEcc
Q 041215 77 PIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~d 96 (136)
.+..+-|+....++++.+.|
T Consensus 116 ~v~~~if~~~~e~V~s~~~d 135 (404)
T KOG1409|consen 116 RVSAIVFSLTHEWVLSTGKD 135 (404)
T ss_pred ceeeEEecCCceeEEEeccc
Confidence 99999999888887776554
No 332
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.04 E-value=6.8 Score=32.88 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=48.3
Q ss_pred eEEEEEeeCC---CCcceeEEEeeeCCCCccce--eEEEEeCCCCEEEEEcCCCcEEEEeCC--CcceeeecccCCCcee
Q 041215 7 RVGVHHLDDS---QQSKNFTFKCHRDGSEIYSV--NSLNFHPIHHTFATAGSDGAFNFWDKD--SKQRLKAMSRCGQPIP 79 (136)
Q Consensus 7 ~v~i~~~d~~---~~~~~~~l~~h~~~~~~~~v--~~l~~~p~~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~h~~~v~ 79 (136)
.|.+|.+-.. .++.+..-.++-+ +.++| ..+.|||....|+.=.....--++++. +......+ ...+.|+
T Consensus 83 hVtVWqL~~s~~e~~K~l~sQtcEi~--e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~Ih 159 (671)
T PF15390_consen 83 HVTVWQLCPSTTERNKLLMSQTCEIR--EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIH 159 (671)
T ss_pred eEEEEEeccCccccccceeeeeeecc--CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEE
Confidence 4667666543 2344444444432 23343 478999998654433333322233432 33333334 4458999
Q ss_pred EEEEccCCCEEEEEEc
Q 041215 80 CSTFNTDGSIFAYSVC 95 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~ 95 (136)
|.+|.+||+.|+.|-+
T Consensus 160 CACWT~DG~RLVVAvG 175 (671)
T PF15390_consen 160 CACWTKDGQRLVVAVG 175 (671)
T ss_pred EEEecCcCCEEEEEeC
Confidence 9999999997776643
No 333
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=89.04 E-value=2.4 Score=33.24 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=43.6
Q ss_pred EEEEeeCC-CCcceeEEEeeeC----------CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215 9 GVHHLDDS-QQSKNFTFKCHRD----------GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK 65 (136)
Q Consensus 9 ~i~~~d~~-~~~~~~~l~~h~~----------~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~ 65 (136)
.+.+||.. ..++..+++.|.. ..++|.=..++|+.++..+++|+....+++++...|
T Consensus 294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 34457773 4667777777753 566666678999999999999999999999996654
No 334
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.95 E-value=1.2 Score=38.11 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=46.4
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc---------------ceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSK---------------QRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~---------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
...|+.|+....++++|+.||.+++.-+.+. ..-+++.+|+..|.-+.|+...+-+-|+
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 6789999999999999999999998755321 0114667899999999999877666554
No 335
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.03 E-value=0.29 Score=39.32 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=16.0
Q ss_pred CCCceeEEEEccCCCEEEEEE
Q 041215 74 CGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 74 h~~~v~~v~~sp~~~~l~s~~ 94 (136)
|..+|.++.++|.+..+++..
T Consensus 143 H~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccCceEEEEeeccccceeecc
Confidence 668888888888887777544
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.94 E-value=4.4 Score=36.41 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=47.7
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
.|.++.|..+..-++.+...|.|.+-|.++... -........|.+++||||+.+++...+...
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQT 132 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcE
Confidence 688889988888788888888888878776532 222234578999999999999888777443
No 337
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.72 E-value=5.3 Score=30.83 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=39.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 71 (136)
++.+|.+. .+|..+++.+..+..... ....... ++..++.++.++.+..+|..+|+.+-..
T Consensus 71 ~~~~g~v~--a~d~~tG~~~W~~~~~~~-----~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 131 (377)
T TIGR03300 71 ADADGTVV--ALDAETGKRLWRVDLDER-----LSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRA 131 (377)
T ss_pred ECCCCeEE--EEEccCCcEeeeecCCCC-----cccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeee
Confidence 44556554 478888888776553322 1122222 3567777888999999999998876544
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=87.37 E-value=0.74 Score=39.68 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK 62 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~ 62 (136)
|||.+|.|++ ||.-.......|.+... +|.+|+.+.||+++++... .+|.++++
T Consensus 593 vgs~~G~IRL--yd~~g~~AKT~lp~lG~-----pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 593 VGSNKGDIRL--YDRLGKRAKTALPGLGD-----PIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEeCCCcEEe--ecccchhhhhcCCCCCC-----CeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 6899999998 77433333344556666 9999999999997766543 45666664
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.04 E-value=1.6 Score=38.05 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC
Q 041215 31 SEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 31 ~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~ 64 (136)
+|.+++..+.|+++|..++++..-|.|.+|.+..
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 3444999999999999999999999999999864
No 340
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.70 E-value=3.7 Score=29.90 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=35.0
Q ss_pred CEEEEEcCCCcEEEEeCCC--cceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 46 HTFATAGSDGAFNFWDKDS--KQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 46 ~~l~s~~~dg~v~vwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
..|+.+.....|.+|++.+ .....+|+.- +.|..+.++..|++++|=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEE
Confidence 4444445567899999883 3445666544 889999999999999984
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=86.47 E-value=11 Score=31.84 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=25.7
Q ss_pred CcEEEEeCCC----c-ceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 55 GAFNFWDKDS----K-QRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 55 g~v~vwd~~~----~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
+.|.+.|..+ + ..+..+ .-....+.|.++|||+++..++.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred CEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC
Confidence 3466666665 2 233333 33456688999999998887654
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=85.79 E-value=8.9 Score=32.41 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=39.4
Q ss_pred ceeEEEEeCCCCEEEEEc-CCCcEEEEeCCCcce------------eeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAG-SDGAFNFWDKDSKQR------------LKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~~~~~------------~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....+.++|||.+++.++ .+..|.+.|+.+... +.+..-..+| ...+|.++|..+.|-
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytsl 392 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTL 392 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeE
Confidence 678999999997655555 578999999987542 3333333333 457888888755543
No 343
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.53 E-value=3.4 Score=21.01 Aligned_cols=40 Identities=5% Similarity=-0.008 Sum_probs=24.7
Q ss_pred CCCCEEEE-EcCCCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215 43 PIHHTFAT-AGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF 83 (136)
Q Consensus 43 p~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 83 (136)
|+++.|+. ...++.|.++|..++..+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 45654444 445788999999888777666442 33334444
No 344
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.32 E-value=1.2 Score=38.07 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=56.2
Q ss_pred CceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~ 79 (136)
+|.|-.+.. ||.++ -.+.+.+...+. ....+.|+.....+...+....|++||..-| ..++.+.+|-..|+
T Consensus 133 csvdt~vh~--wd~rSp~~p~ys~~~w~s-----~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn 205 (1081)
T KOG0309|consen 133 CSVDTYVHA--WDMRSPHRPFYSTSSWRS-----AASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN 205 (1081)
T ss_pred cccccccee--eeccCCCcceeeeecccc-----cCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee
Confidence 345555554 77764 356777777777 7889999877655555566677999999864 56788888888888
Q ss_pred EEEEcc
Q 041215 80 CSTFNT 85 (136)
Q Consensus 80 ~v~~sp 85 (136)
.++|+.
T Consensus 206 ~~~fnr 211 (1081)
T KOG0309|consen 206 SIDFNR 211 (1081)
T ss_pred hHHHhh
Confidence 888864
No 345
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.13 E-value=0.32 Score=42.33 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=56.5
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC--CcEEEEeCCC-cceeeecccCCCc
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD--GAFNFWDKDS-KQRLKAMSRCGQP 77 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d--g~v~vwd~~~-~~~~~~~~~h~~~ 77 (136)
||+-.|.|.+ |++.+|.......||.+ +|+-+--+-+|..+.+.+.. ...-+|++.. +...+.|.+.
T Consensus 1118 vG~~~Geik~--~nv~sG~~e~s~ncH~S-----avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed--- 1187 (1516)
T KOG1832|consen 1118 VGSHAGEIKI--FNVSSGSMEESVNCHQS-----AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDED--- 1187 (1516)
T ss_pred eeeccceEEE--EEccCcccccccccccc-----ccccccccCCcceeeeeccccCchHHHhccccccCcccccccc---
Confidence 5778888877 88899999999999999 99999888888655554443 3577999764 5555666443
Q ss_pred eeEEEEccCC
Q 041215 78 IPCSTFNTDG 87 (136)
Q Consensus 78 v~~v~~sp~~ 87 (136)
.++.|+..-
T Consensus 1188 -~~vkFsn~~ 1196 (1516)
T KOG1832|consen 1188 -KAVKFSNSL 1196 (1516)
T ss_pred -ceeehhhhH
Confidence 677787653
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.94 E-value=19 Score=28.23 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=48.8
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC---C
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC---G 75 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h---~ 75 (136)
+++.+|..+++.+-++..- -...+.++|+++.+++++ ....|.+||..+.....++.-. .
T Consensus 18 rv~viD~d~~k~lGmi~~g-------~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTG-------FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-------SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred eEEEEECCCCcEEEEeecc-------cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 5566998888877776542 223467899998877755 2456999999987666543322 1
Q ss_pred ----CceeEEEEccCCCEEEE
Q 041215 76 ----QPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 76 ----~~v~~v~~sp~~~~l~s 92 (136)
...+.++++.+++++..
T Consensus 91 ~~~~~~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 91 AQVVPYKNMFALSADGKFLYV 111 (342)
T ss_dssp --BS--GGGEEE-TTSSEEEE
T ss_pred heecccccceEEccCCcEEEE
Confidence 22245677888877664
No 347
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.86 E-value=3 Score=34.11 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=27.3
Q ss_pred eeEEEEeC----CCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215 36 VNSLNFHP----IHHTFATAGSDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 36 v~~l~~~p----~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 71 (136)
+..++++. +..+|++.+.|+.+++||+.++.++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 44555655 5589999999999999999999885543
No 348
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.36 E-value=12 Score=31.69 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=52.3
Q ss_pred EeeCCCCcceeEEE-eeeCCCCccceeEEEE--eCCCCEEEEEcCCCcEEEEeC-----CC-c---ceee--ecccCC-C
Q 041215 12 HLDDSQQSKNFTFK-CHRDGSEIYSVNSLNF--HPIHHTFATAGSDGAFNFWDK-----DS-K---QRLK--AMSRCG-Q 76 (136)
Q Consensus 12 ~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~--~p~~~~l~s~~~dg~v~vwd~-----~~-~---~~~~--~~~~h~-~ 76 (136)
+||.+.+...+.-. ...+ .|.+++| .|+++.+.+.+....|.++.- .+ + ..+. .+..+. .
T Consensus 55 IWD~~~~~lE~~~~f~~~~-----~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h 129 (631)
T PF12234_consen 55 IWDTRSGVLEYEESFSEDD-----PIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPH 129 (631)
T ss_pred EEEcCCcEEEEeeeecCCC-----ceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCC
Confidence 47776555333321 2244 8999999 488899999999998888742 11 1 1222 223443 6
Q ss_pred ceeEEEEccCCCEEEEEEcc
Q 041215 77 PIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~d 96 (136)
+|....|.++|.+++.++..
T Consensus 130 ~Igds~Wl~~G~LvV~sGNq 149 (631)
T PF12234_consen 130 PIGDSIWLKDGTLVVGSGNQ 149 (631)
T ss_pred CccceeEecCCeEEEEeCCE
Confidence 89999999999888765543
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=83.08 E-value=11 Score=28.06 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=35.1
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCC---------CceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCG---------QPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~sp~~~~l~s~ 93 (136)
.++++.++|.. ++++-...+..|..+| .+|..+..+.--. .+.-.|+|.++|.+++++
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 57899999887 6777777788888888 5566655443222 355689999999988865
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=82.32 E-value=13 Score=28.47 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=41.5
Q ss_pred ceeEEEEeCCCCEEEEEcC-----C----CcEEEEeCC-CcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGS-----D----GAFNFWDKD-SKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~-----d----g~v~vwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
..+.+...|+|.+.++... . ..-.+|.+. .+..+..+..+-..-+.|+||||++.+..+-.
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 4578888999988777665 1 112455555 46666666565566689999999987665543
No 351
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.25 E-value=12 Score=32.76 Aligned_cols=58 Identities=16% Similarity=0.318 Sum_probs=41.6
Q ss_pred ceeEEEEeCCCCE-EEEEcCCCcEEEEeCCCcc-eeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHT-FATAGSDGAFNFWDKDSKQ-RLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~-l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
+|+++.+.-++.. ++.+. ...|.+|.+.... ....+..|+..++|..|++....++.|
T Consensus 173 pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred CceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 8999999888854 33333 3458888887443 345577888999999999877644434
No 352
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.12 E-value=5.9 Score=32.17 Aligned_cols=85 Identities=13% Similarity=0.236 Sum_probs=58.5
Q ss_pred eeCCCC--cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC------cce---------eeecccCC
Q 041215 13 LDDSQQ--SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS------KQR---------LKAMSRCG 75 (136)
Q Consensus 13 ~d~~~~--~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~------~~~---------~~~~~~h~ 75 (136)
+|.... +..+.-+-|.. +|.++.+.|-+...++....|.|..|..+. ... +..+.-..
T Consensus 127 vD~~~d~~q~~~fkklH~s-----PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 127 VDGFGDFCQDGYFKKLHFS-----PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred ECCcCCcCccceecccccC-----ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence 665432 33344345788 999999999999999999999999998762 111 12222345
Q ss_pred CceeEEEEccCCCEEEEEEcccccccc
Q 041215 76 QPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
....++.|+|++..+++-..|--..++
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEE
Confidence 677899999999988876554433333
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=82.12 E-value=11 Score=24.49 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 40 NFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 40 ~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.|..+| ..|+.|+.|..|++|+-. ..+.++... +.|.+++-...+ .++.+...+
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~-~F~Y~l~NG 63 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGG-RFAYALANG 63 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCC-EEEEEecCC
Confidence 334455 689999999999999764 466777555 566776666554 456554444
No 354
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.03 E-value=4.6 Score=32.39 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=39.0
Q ss_pred eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215 21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
.+.|...+. .+.++..+|.+++.++.+.-|.|.++|+.++..+.-+.+.
T Consensus 300 r~~l~D~~R-----~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY 348 (415)
T PF14655_consen 300 RFGLPDSKR-----EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY 348 (415)
T ss_pred EEeeccCCc-----eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence 344555555 6889999999999888888899999999998877766665
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=82.00 E-value=21 Score=27.40 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=44.1
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCCC--cce-----eeecccCCCceeE
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKDS--KQR-----LKAMSRCGQPIPC 80 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~--~~~-----~~~~~~h~~~v~~ 80 (136)
.+|.+|+ .+.....+..+-. -.+.|+|+|++..|..+.. .+.|.-|++.. +.. ...+....+..-.
T Consensus 144 ~lyr~~p-~g~~~~l~~~~~~-----~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG 217 (307)
T COG3386 144 SLYRVDP-DGGVVRLLDDDLT-----IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG 217 (307)
T ss_pred eEEEEcC-CCCEEEeecCcEE-----ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc
Confidence 4555554 2333333333333 5589999999965555544 46788777652 211 1122223355566
Q ss_pred EEEccCCCEEEEE
Q 041215 81 STFNTDGSIFAYS 93 (136)
Q Consensus 81 v~~sp~~~~l~s~ 93 (136)
++...+|.+.+++
T Consensus 218 ~~vDadG~lw~~a 230 (307)
T COG3386 218 MAVDADGNLWVAA 230 (307)
T ss_pred eEEeCCCCEEEec
Confidence 7777777777533
No 356
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.78 E-value=16 Score=28.60 Aligned_cols=60 Identities=15% Similarity=0.318 Sum_probs=39.5
Q ss_pred eeEEEEeCCCCEEEEE-cCCC----cEEEEeCCCcceeee-cccCCCceeEEEEccCCCEEEEEEccc
Q 041215 36 VNSLNFHPIHHTFATA-GSDG----AFNFWDKDSKQRLKA-MSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 36 v~~l~~~p~~~~l~s~-~~dg----~v~vwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
+...+++|++++++-+ +..| .++++|+.++..+.. +... ....+.|.+++..|....-+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECST
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCc
Confidence 4467889999765533 4333 499999999866542 2221 123499999998777665544
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=81.63 E-value=14 Score=30.49 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=46.1
Q ss_pred EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce-eEEEEccCCCE
Q 041215 11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI-PCSTFNTDGSI 89 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v-~~v~~sp~~~~ 89 (136)
.-+|..+++.......... ..... +.-.+.+++.++.+|.++++|..+|+.+.++....... .=|.|.-+|++
T Consensus 444 ~AiD~~tGk~~W~~~~~~p-----~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 444 IAWDPITGKIVWEHKEDFP-----LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred EEEeCCCCceeeEecCCCC-----CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence 4488888888877653211 11121 22245677888889999999999999987775442111 12344457764
Q ss_pred EE
Q 041215 90 FA 91 (136)
Q Consensus 90 l~ 91 (136)
++
T Consensus 518 Yv 519 (527)
T TIGR03075 518 YV 519 (527)
T ss_pred EE
Confidence 43
No 358
>PRK13616 lipoprotein LpqB; Provisional
Probab=81.51 E-value=11 Score=31.72 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=34.5
Q ss_pred ceeEEEEeCCCCEEEEEcCC-CcEEEE-----------eCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSD-GAFNFW-----------DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~d-g~v~vw-----------d~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
..+.-+|+|+|..|...... ..+++. ++..+.... .....|..+.|||||..++.-.
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 46778999998766665432 222232 333222211 2246799999999999766543
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=81.05 E-value=26 Score=27.88 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=37.6
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-CCceeEEEEccCC
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-GQPIPCSTFNTDG 87 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~ 87 (136)
++..|+++|++++++.-..+|.+.+....-.+...++... ......|.|.-+.
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 7999999999999999999999888775544444444333 3455666665443
No 360
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=80.40 E-value=23 Score=27.25 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=44.1
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeE-EEEeCCCC-EEEEEcCC--Cc--EEEEeCCCcceeeecccCCCce
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNS-LNFHPIHH-TFATAGSD--GA--FNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~-l~~~p~~~-~l~s~~~d--g~--v~vwd~~~~~~~~~~~~h~~~v 78 (136)
||--.|+.++...+... .+....- .|.. +.+.+++. .++++..+ .. |..-++..+..+..+......-
T Consensus 257 ~G~~hly~~~~~~~~~~-~lT~G~~-----~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~ 330 (353)
T PF00930_consen 257 DGYRHLYLYDLDGGKPR-QLTSGDW-----EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH 330 (353)
T ss_dssp TSSEEEEEEETTSSEEE-ESS-SSS------EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT
T ss_pred CCCcEEEEEccccccee-ccccCce-----eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc
Confidence 44445555555444322 2222222 5644 67788774 55566653 23 4444555233455555443333
Q ss_pred eEEEEccCCCEEEEEEc
Q 041215 79 PCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~ 95 (136)
..+.|||++++++..++
T Consensus 331 ~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 331 YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEE-TTSSEEEEEEE
T ss_pred eEEEECCCCCEEEEEEc
Confidence 69999999998775543
No 361
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=79.64 E-value=5.7 Score=30.89 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=45.9
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcce------ee----------ecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQR------LK----------AMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~------~~----------~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.|+...|||.. ..+.-.++.|.|++-|++.... +. -+.+--..|..+.|++.|+++++ .++.
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-Rdyl 301 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYL 301 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccc
Confidence 46788999988 5677777889999999873211 11 11122367788999999999984 4554
Q ss_pred ccccccc
Q 041215 98 WSKGAEN 104 (136)
Q Consensus 98 ~~~~~~~ 104 (136)
..+..+.
T Consensus 302 tvkiwDv 308 (460)
T COG5170 302 TVKIWDV 308 (460)
T ss_pred eEEEEec
Confidence 4444333
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=79.45 E-value=15 Score=24.01 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=48.0
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
|||.|..|++ |+.. ..+..+. ... .|..+.-... ..++-+-.+|+|-+|+-.. .+-... ....+.+
T Consensus 20 vGs~D~~IRv--f~~~--e~~~Ei~-e~~-----~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiK-SK~~~~~ 85 (111)
T PF14783_consen 20 VGSDDFEIRV--FKGD--EIVAEIT-ETD-----KVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIK-SKNQVTS 85 (111)
T ss_pred EecCCcEEEE--EeCC--cEEEEEe-ccc-----ceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeec-cCCCeEE
Confidence 5788888888 6443 4455544 234 6777766655 5677888889998887532 222222 2233555
Q ss_pred EEEc-cC--C-CEEEEEEccc
Q 041215 81 STFN-TD--G-SIFAYSVCYD 97 (136)
Q Consensus 81 v~~s-p~--~-~~l~s~~~dd 97 (136)
+++. .+ | .-|++|.+++
T Consensus 86 ~~~~D~~gdG~~eLI~GwsnG 106 (111)
T PF14783_consen 86 MAFYDINGDGVPELIVGWSNG 106 (111)
T ss_pred EEEEcCCCCCceEEEEEecCC
Confidence 5543 33 2 3577675543
No 363
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=79.40 E-value=10 Score=29.64 Aligned_cols=29 Identities=7% Similarity=0.214 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCcEEEEeCCCcceeeeccc
Q 041215 45 HHTFATAGSDGAFNFWDKDSKQRLKAMSR 73 (136)
Q Consensus 45 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 73 (136)
+..|+.++.+|.|.+.|..+|+.+.....
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 35677788889999999999887766543
No 364
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.23 E-value=6 Score=34.41 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=52.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCC-----cEEEEeCCCc------cee-
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDG-----AFNFWDKDSK------QRL- 68 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg-----~v~vwd~~~~------~~~- 68 (136)
|+.+|.|.+ ++ +..+..+.|+.+.. .+...-++-++ .+|++.+.|. .|++|+++.- .++
T Consensus 41 gt~~G~V~~--Ln-~s~~~~~~fqa~~~-----siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 41 GTADGRVVI--LN-SSFQLIRGFQAYEQ-----SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred eeccccEEE--ec-ccceeeehheecch-----hhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 566666654 42 22344467777777 63333344444 6888888774 4889998632 222
Q ss_pred -eeccc-----CCCceeEEEEccCCCEEEEEEcc
Q 041215 69 -KAMSR-----CGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 69 -~~~~~-----h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
+.+.. ...++.+++.+.+-..+|.|=.+
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~n 146 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTN 146 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEecC
Confidence 11222 24678899999887777766443
No 365
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.45 E-value=25 Score=26.89 Aligned_cols=53 Identities=8% Similarity=0.003 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 45 HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 45 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
|.+++.|...|.+++.++.+|.....+.....-=......+++.++-.++.|.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~ 115 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDG 115 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCC
Confidence 56788888999999999999866655543321112233445555555554444
No 366
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=77.73 E-value=22 Score=25.06 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=41.6
Q ss_pred ceeceEEEEEeeCCCCcceeEE-EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTF-KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
+.|+. ++.+|..+++.+... ........ -...+.....+..++.+..++.|..+|..+|..+......
T Consensus 83 ~~~~~--l~~~d~~tG~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 83 TSDGS--LYALDAKTGKVLWSIYLTSSPPAG--VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp ETTSE--EEEEETTTSCEEEEEEE-SSCTCS--TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred cceee--eEecccCCcceeeeeccccccccc--cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 34554 455898999998884 32211000 1112222223677777877899999999999887666543
No 367
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=77.73 E-value=10 Score=34.04 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=28.6
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR 67 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~ 67 (136)
....++++++|+++++-+.++.|++||+.++..
T Consensus 860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 467899999999998888899999999988654
No 368
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=77.58 E-value=26 Score=26.89 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=32.7
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.+..+.-.++|.+++.++....+.-|+--.. -..+.. .....|.+|.|+|++.+.+.+
T Consensus 146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-NSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE
T ss_pred eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc-CccceehhceecCCCCEEEEe
Confidence 6777888899998877766555566764321 222222 345889999999998876654
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.21 E-value=27 Score=26.97 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=51.0
Q ss_pred eeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC------------------CCcEEEEeCCCccee--eec
Q 041215 13 LDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS------------------DGAFNFWDKDSKQRL--KAM 71 (136)
Q Consensus 13 ~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~------------------dg~v~vwd~~~~~~~--~~~ 71 (136)
||.+. -+..-.|..|.- ....+.|.+||+.++.++- ..++-+.|..+|+.+ +++
T Consensus 145 Yd~r~~fqrvgE~~t~Gi-----GpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L 219 (366)
T COG3490 145 YDAREGFQRVGEFSTHGI-----GPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL 219 (366)
T ss_pred EecccccceecccccCCc-----CcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence 55542 233344455554 6788999999988877652 112333343444443 233
Q ss_pred c--cCCCceeEEEEccCCCEEEEE----EcccccccccccC
Q 041215 72 S--RCGQPIPCSTFNTDGSIFAYS----VCYDWSKGAENHN 106 (136)
Q Consensus 72 ~--~h~~~v~~v~~sp~~~~l~s~----~~dd~~~~~~~~~ 106 (136)
. .+.-.|..++..++++.++-+ ..+|+-.+...+.
T Consensus 220 p~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~ 260 (366)
T COG3490 220 PASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR 260 (366)
T ss_pred chhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc
Confidence 3 344578899999999987743 2244444444443
No 370
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=75.88 E-value=30 Score=28.12 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=47.6
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCC---ccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE-
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSE---IYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC- 80 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~---~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~- 80 (136)
+|.+ .-+|..+++.+........... ..+...-...-.+..|+.++.||.|+.+|..+|+.+-++... ..+..
T Consensus 365 ~G~l--~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~ 441 (488)
T cd00216 365 KGGL--AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTP-SGIQAT 441 (488)
T ss_pred ceEE--EEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECC-CCceEc
Confidence 4444 4488888888877653210000 001111111124578888899999999999999988766442 23322
Q ss_pred -EEEccCCCEEE
Q 041215 81 -STFNTDGSIFA 91 (136)
Q Consensus 81 -v~~sp~~~~l~ 91 (136)
+.|..++++++
T Consensus 442 P~~~~~~g~~yv 453 (488)
T cd00216 442 PMTYEVNGKQYV 453 (488)
T ss_pred CEEEEeCCEEEE
Confidence 33455666443
No 371
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=75.32 E-value=20 Score=31.78 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=42.6
Q ss_pred eeEEEEeCCCCEEEEEcC--CCcEEEEeCCCcceeeeccc----CCCceeEEEEccCCCEEEEEEcc
Q 041215 36 VNSLNFHPIHHTFATAGS--DGAFNFWDKDSKQRLKAMSR----CGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 36 v~~l~~~p~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~----h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
-.+++|-|.|+++++.-. +...-+|.-++|..-.+|.- ....|..++|++++.+||.-..+
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 357999999999988875 22233344456655544433 34688999999999999886543
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=74.42 E-value=4.1 Score=30.05 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=28.9
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeee-CCCCccceeEEEEeCCCCEEEEE--cCCCcEEEEeCC
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHR-DGSEIYSVNSLNFHPIHHTFATA--GSDGAFNFWDKD 63 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~-~~~~~~~v~~l~~~p~~~~l~s~--~~dg~v~vwd~~ 63 (136)
+|+.||+|+. +.+..++..-....|. . ++........+.++... |.|..++.|++.
T Consensus 119 ~~~~dg~ir~--~n~~p~k~~g~~g~h~~~-----~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 119 VGAQDGRIRA--CNIKPNKVLGYVGQHNFE-----SGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred EeccCCceee--eccccCceeeeeccccCC-----CcceeEEecCCceEEeeccccchhhhhcchh
Confidence 3556777766 4444444443333343 3 44444444444555555 556666666654
No 373
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.22 E-value=30 Score=25.55 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=48.6
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc------------
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS------------ 72 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~------------ 72 (136)
||+-.+..-|+++-....+...-..+.++-.++.+-|- +|..++-.=.+..|-..+.++|+++..+.
T Consensus 147 dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~ 225 (262)
T COG3823 147 DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDK 225 (262)
T ss_pred CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccc
Confidence 45555544555544444333322221222233344443 33333333333333333555565544332
Q ss_pred cCCCceeEEEEccCC-CEEEEEEcccccccccccCC
Q 041215 73 RCGQPIPCSTFNTDG-SIFAYSVCYDWSKGAENHNP 107 (136)
Q Consensus 73 ~h~~~v~~v~~sp~~-~~l~s~~~dd~~~~~~~~~~ 107 (136)
.+....+.|++.|++ ++++|| -.|...++.+.+
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTG--K~wp~lfEVk~~ 259 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITG--KLWPLLFEVKLD 259 (262)
T ss_pred cccccccceeecCcCCeEEEec--CcCceeEEEEec
Confidence 234567899999987 677765 446666666543
No 374
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.70 E-value=9.1 Score=18.29 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=19.7
Q ss_pred CEEEEEcCCCcEEEEeCCCcceeee
Q 041215 46 HTFATAGSDGAFNFWDKDSKQRLKA 70 (136)
Q Consensus 46 ~~l~s~~~dg~v~vwd~~~~~~~~~ 70 (136)
..++.++.++.+..+|..+|+.+-+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3577788889999999988876544
No 375
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.90 E-value=21 Score=22.19 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=26.5
Q ss_pred CCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 53 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.+|.+..||..+++....+. --.--+.|++++++..++.+
T Consensus 35 ~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEE
Confidence 45778888888876433332 23466899999999988766
No 376
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=71.32 E-value=9.8 Score=31.65 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=36.2
Q ss_pred CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEE
Q 041215 46 HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 46 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s 92 (136)
.+++.++.-|-|++||--.......+++-+..|-.|..+.+|.++++
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence 57889999999999985443444456677788999999999986553
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.22 E-value=18 Score=27.87 Aligned_cols=57 Identities=12% Similarity=0.122 Sum_probs=39.7
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-CceeEEEEccCCCEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-QPIPCSTFNTDGSIFA 91 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~l~ 91 (136)
.++++.|+|+.+.|++....+.-.++=...|+.+.+++-.. ...-.|.|..++.+++
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi 144 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVI 144 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEE
Confidence 58999999999999999888877777777788877665321 2233455554444444
No 378
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=71.16 E-value=14 Score=28.85 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=37.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 72 (136)
++.+|.+. -+|..+++.......... ......+. +..++.+..++.|..+|..+|+.+-.+.
T Consensus 126 ~~~~g~l~--ald~~tG~~~W~~~~~~~-----~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 126 GSEKGQVY--ALNAEDGEVAWQTKVAGE-----ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred EcCCCEEE--EEECCCCCCcccccCCCc-----eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 34455554 488888888877653221 11111222 3455567778889999999988765543
No 379
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=70.78 E-value=4.3 Score=35.76 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=40.7
Q ss_pred eeEEEEeC---CCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE-----------EEccCCCEEEEEEcccccc
Q 041215 36 VNSLNFHP---IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS-----------TFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 36 v~~l~~~p---~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v-----------~~sp~~~~l~s~~~dd~~~ 100 (136)
+.-+.|.| +.-++..+..++.+++.+..+... .-+..|+.++..+ ..||||..|++++.|++..
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 34455544 335666666778888776654322 3344565554443 4689999999999988654
No 380
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.55 E-value=13 Score=33.62 Aligned_cols=56 Identities=7% Similarity=0.097 Sum_probs=40.3
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc----CCCceeEEEEccCCCEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR----CGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~v~~sp~~~~l~ 91 (136)
.+++++|+|.|.-++.|...|++..|-.. ++....+.+ ....|.||+|-....+++
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 67899999999999999999998877533 333333332 247889999966555544
No 381
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=69.65 E-value=31 Score=25.44 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=39.6
Q ss_pred ceeEEEEeCCCCEEEEEc---CCCcEEEEeCC---Cc------ceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFATAG---SDGAFNFWDKD---SK------QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~---~dg~v~vwd~~---~~------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.|..++++|||..++... .++.|.+=-+. .+ ............+..+.|.+++.+++.+...+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 799999999996544443 34556654332 22 11111122346889999999999888765544
No 382
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=69.52 E-value=46 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=19.3
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ 66 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~ 66 (136)
+|.+++-- .+.++++.+ ..|.+|++....
T Consensus 90 ~V~ai~~~-~~~lv~~~g--~~l~v~~l~~~~ 118 (321)
T PF03178_consen 90 PVTAICSF-NGRLVVAVG--NKLYVYDLDNSK 118 (321)
T ss_dssp -EEEEEEE-TTEEEEEET--TEEEEEEEETTS
T ss_pred cceEhhhh-CCEEEEeec--CEEEEEEccCcc
Confidence 88887776 345555554 779999887665
No 383
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=69.40 E-value=15 Score=29.44 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=42.9
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccc-eeEEEEeCCC------------------CEEEEEcCCCcEEEEeCCC
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYS-VNSLNFHPIH------------------HTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~-v~~l~~~p~~------------------~~l~s~~~dg~v~vwd~~~ 64 (136)
.|.-.+|.++|...+..++.+++.+. . +.-+.....+ -+++-+..-|.|.+|++++
T Consensus 325 tDslGRV~LiD~~~~~vvrmWKGYRd-----Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~ 399 (415)
T PF14655_consen 325 TDSLGRVLLIDVARGIVVRMWKGYRD-----AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQ 399 (415)
T ss_pred EcCCCcEEEEECCCChhhhhhccCcc-----ceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEEecCC
Confidence 46777777899999999999998876 2 1111111111 1344555678999999999
Q ss_pred cceeeecc
Q 041215 65 KQRLKAMS 72 (136)
Q Consensus 65 ~~~~~~~~ 72 (136)
|..+..+.
T Consensus 400 g~Rv~a~~ 407 (415)
T PF14655_consen 400 GPRVAAFN 407 (415)
T ss_pred CCEEEEEE
Confidence 88776654
No 384
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=68.94 E-value=13 Score=18.61 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=16.6
Q ss_pred ceeEEEEeCCCC-EEEEEcCC--CcEEEE
Q 041215 35 SVNSLNFHPIHH-TFATAGSD--GAFNFW 60 (136)
Q Consensus 35 ~v~~l~~~p~~~-~l~s~~~d--g~v~vw 60 (136)
.-....|+|+|+ ++++...+ |...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456789999995 55555555 655555
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.61 E-value=9.2 Score=34.23 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=40.0
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCcc-eeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 43 PIHHTFATAGSDGAFNFWDKDSKQ-RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 43 p~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
-.+.+++.|++.|.+-.+|+...- ..++-....++|.+++|+.+|..++.|-+++..
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V 154 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHV 154 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcE
Confidence 344678888888888887765421 112222335899999999999999988776543
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=68.57 E-value=44 Score=28.12 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=35.9
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEE---EeCCCcce-e---eecc-cCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNF---WDKDSKQR-L---KAMS-RCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~v---wd~~~~~~-~---~~~~-~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.|..+.|+|||..++-.. ++.|.+ -....|.. + ..+. .-...+.++.|..++.+++..
T Consensus 449 ~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~ 514 (591)
T PRK13616 449 PISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGR 514 (591)
T ss_pred CcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEe
Confidence 799999999997555544 366665 33334431 1 1121 223446889999999876543
No 387
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.17 E-value=26 Score=21.77 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=25.1
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEE
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATA 51 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~ 51 (136)
.+.+++.||+.+++..-.+.+- . -.+.+++++++.+|+.+
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L-~-----fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL-Y-----FPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE-S-----SEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCC-C-----ccCeEEEcCCCCEEEEE
Confidence 3455667999877665555442 2 45899999999755444
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.45 E-value=6.9 Score=32.45 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=37.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK 62 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~ 62 (136)
|||.+|.|++ ||--.......|.+... +|..+..+.+|.++++.. +.++.+.++
T Consensus 446 vgS~~GdIRL--Ydri~~~AKTAlPgLG~-----~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 446 VGSLKGDIRL--YDRIGRRAKTALPGLGD-----AIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred EeecCCcEEe--ehhhhhhhhhcccccCC-----ceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 6899999998 77633344455667777 999999999998765543 344555553
No 389
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=66.71 E-value=13 Score=29.47 Aligned_cols=82 Identities=11% Similarity=0.049 Sum_probs=36.3
Q ss_pred eeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCc--EEEEeCCCcceeeecccCCCceeEEEEccCCCE
Q 041215 13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGA--FNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSI 89 (136)
Q Consensus 13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 89 (136)
.|+.++.....|.......+..=...=+|.++| .+|+.+..++. +++.|+.+++..+...+.........++|+.+.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 466777777776544330000011223567888 57777777765 666688887755433322233445667777776
Q ss_pred EEEEE
Q 041215 90 FAYSV 94 (136)
Q Consensus 90 l~s~~ 94 (136)
+....
T Consensus 95 ~~Yv~ 99 (386)
T PF14583_consen 95 LYYVK 99 (386)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65443
No 390
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=66.60 E-value=16 Score=31.95 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=26.9
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSK 65 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~ 65 (136)
.++++.-||.+.-++.+..||.|.+|++...
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 5677888999999999999999999997654
No 391
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.40 E-value=96 Score=26.89 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=52.3
Q ss_pred CCCccceeEEEEeCCCCEEEEEcCCCcEEEEe---------CCCcce--ee-ec--------ccCCCceeEEEEccCC--
Q 041215 30 GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWD---------KDSKQR--LK-AM--------SRCGQPIPCSTFNTDG-- 87 (136)
Q Consensus 30 ~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd---------~~~~~~--~~-~~--------~~h~~~v~~v~~sp~~-- 87 (136)
....+.|..+.++|.|++|+-.|..+..-+.- ++.|.. .+ ++ ..+...|..+.|+|.+
T Consensus 81 ~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 81 NPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 34567899999999999999998877533321 111111 11 11 1234688999999964
Q ss_pred -CEEEEEEcccccccccccCCC
Q 041215 88 -SIFAYSVCYDWSKGAENHNPA 108 (136)
Q Consensus 88 -~~l~s~~~dd~~~~~~~~~~~ 108 (136)
..|+.=.+|+..+.+....|.
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 566666788888877777666
No 392
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=62.08 E-value=63 Score=24.01 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=37.1
Q ss_pred ceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccC-CCceeEEEEccCCCEEEE
Q 041215 35 SVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRC-GQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s 92 (136)
.++.++|+|+.. +++..+..+.|.-.+. +|+.+..+.-. .+..-.|++.-++.++++
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEE
Confidence 699999999875 5555555677877775 47777766544 366778888877766664
No 393
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=61.42 E-value=20 Score=18.07 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=20.2
Q ss_pred EEEEcCCCcEEEEeCCCcceeeecc
Q 041215 48 FATAGSDGAFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 48 l~s~~~dg~v~vwd~~~~~~~~~~~ 72 (136)
++.+..+|.|...|..+|+.+-.+.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 5566889999999999998876554
No 394
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=61.20 E-value=76 Score=27.50 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=35.9
Q ss_pred ceeEEEEe--CCCCEEEEEcCCCcEEEEeCCC--cceeee-cccCCCceeEEEEccCC
Q 041215 35 SVNSLNFH--PIHHTFATAGSDGAFNFWDKDS--KQRLKA-MSRCGQPIPCSTFNTDG 87 (136)
Q Consensus 35 ~v~~l~~~--p~~~~l~s~~~dg~v~vwd~~~--~~~~~~-~~~h~~~v~~v~~sp~~ 87 (136)
.++++++| ...+++|.++....|.||-+.. ...... -..+..-|.+|+|-++.
T Consensus 165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~ 222 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDD 222 (717)
T ss_pred ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCC
Confidence 78999999 7778898888888777765432 111111 11356789999997643
No 395
>PRK10115 protease 2; Provisional
Probab=60.75 E-value=56 Score=27.95 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=38.4
Q ss_pred cceeEEEEeCCCCEEEEEcC-CC----cEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 34 YSVNSLNFHPIHHTFATAGS-DG----AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 34 ~~v~~l~~~p~~~~l~s~~~-dg----~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
+.+..+.++|++++|+-+-+ +| .|++.|+.++..+-....... ..++|+++++.|+....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEec
Confidence 35778899999976555433 33 377888887753322111111 569999999876665553
No 396
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=60.62 E-value=80 Score=24.74 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=42.9
Q ss_pred ceeEEEEeCCCCEEEEEcC---CCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGS---DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
....+++.|++..+..+.. ++.+.+.|..+...+........+ ..++++|++..+..+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~ 178 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN 178 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe
Confidence 3468899999965555554 578888898888777775444455 8999999998555443
No 397
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=59.60 E-value=58 Score=25.90 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=23.2
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCC
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKD 63 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~ 63 (136)
.+.++.|..+ ..|+....||.++++|+.
T Consensus 82 ~iv~~~wt~~-e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 82 RIVGMGWTDD-EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CEEEEEECCC-CeEEEEEcCCEEEEEeCC
Confidence 8889999875 556677799999999985
No 398
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.95 E-value=49 Score=26.79 Aligned_cols=71 Identities=8% Similarity=0.045 Sum_probs=36.7
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-----------ceeeecccC
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-----------QRLKAMSRC 74 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-----------~~~~~~~~h 74 (136)
+.|.+ ||..+++.+..+.. . +|..+.|++++.+++-.+.+. +.+++.... .........
T Consensus 126 ~~i~~--yDw~~~~~i~~i~v--~-----~vk~V~Ws~~g~~val~t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~~E~ 195 (443)
T PF04053_consen 126 DFICF--YDWETGKLIRRIDV--S-----AVKYVIWSDDGELVALVTKDS-IYILKYNLEAVAAIPEEGVEDAFELIHEI 195 (443)
T ss_dssp TEEEE--E-TTT--EEEEESS--------E-EEEEE-TTSSEEEEE-S-S-EEEEEE-HHHHHHBTTTB-GGGEEEEEEE
T ss_pred CCEEE--EEhhHcceeeEEec--C-----CCcEEEEECCCCEEEEEeCCe-EEEEEecchhcccccccCchhceEEEEEe
Confidence 33544 77777777766542 2 578999999999988887654 666554322 022223232
Q ss_pred CCceeEEEEccC
Q 041215 75 GQPIPCSTFNTD 86 (136)
Q Consensus 75 ~~~v~~v~~sp~ 86 (136)
...|.+.+|..+
T Consensus 196 ~~~IkSg~W~~d 207 (443)
T PF04053_consen 196 SERIKSGCWVED 207 (443)
T ss_dssp -S--SEEEEETT
T ss_pred cceeEEEEEEcC
Confidence 466777777655
No 399
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=58.86 E-value=17 Score=28.39 Aligned_cols=65 Identities=22% Similarity=0.432 Sum_probs=43.1
Q ss_pred CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce---eeecccC-----CCceeEEEEccCCC-EEEEEEc
Q 041215 30 GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR---LKAMSRC-----GQPIPCSTFNTDGS-IFAYSVC 95 (136)
Q Consensus 30 ~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h-----~~~v~~v~~sp~~~-~l~s~~~ 95 (136)
..|.|.++.++|+.+...+.++ .|-.|.+|+++--.. +..+..| .-.|++..|+|... .+..+++
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 5677789999999998877766 566799999764221 2223333 25678888988765 3333333
No 400
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=58.38 E-value=11 Score=32.07 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=53.3
Q ss_pred CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc-EEEEeCCCcce-----eeecccC-----CCceeEEEEc
Q 041215 16 SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA-FNFWDKDSKQR-----LKAMSRC-----GQPIPCSTFN 84 (136)
Q Consensus 16 ~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~-v~vwd~~~~~~-----~~~~~~h-----~~~v~~v~~s 84 (136)
.+.+.+..|+.|.. ++..++|.+.+.++++++-.|. |+++.+....+ ...+..+ ...+..++|+
T Consensus 303 ~S~a~i~QfkAhks-----piSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs 377 (788)
T KOG2109|consen 303 DSFADIRQFKAHKS-----PISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFS 377 (788)
T ss_pred cchhhhhheeeecC-----cccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhh
Confidence 45567778899999 9999999999999999987764 77666432111 1111111 2456678888
Q ss_pred cCCCEEEEEEcccc
Q 041215 85 TDGSIFAYSVCYDW 98 (136)
Q Consensus 85 p~~~~l~s~~~dd~ 98 (136)
....+++.+++++-
T Consensus 378 ~~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 378 EVSTIRTAGSCEGE 391 (788)
T ss_pred hhcceEeecccCCC
Confidence 88887777665553
No 401
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=56.72 E-value=88 Score=24.00 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=37.4
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce---eeec----ccCCCceeEEEEccC----CCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR---LKAM----SRCGQPIPCSTFNTD----GSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~---~~~~----~~h~~~v~~v~~sp~----~~~l~s~~ 94 (136)
..+.|+|.|++++|++-- .|.|.+++ .++.. +..+ .....-+..++++|+ +.++++..
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 567899999998888765 89999998 44432 2222 123467789999995 44455444
No 402
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=56.59 E-value=30 Score=31.54 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=36.3
Q ss_pred EEEEeCCCCEEEEEc----CC-CcEEEEeCCCcceeeecccC-CCceeEEEEccCCCEEEEE
Q 041215 38 SLNFHPIHHTFATAG----SD-GAFNFWDKDSKQRLKAMSRC-GQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 38 ~l~~~p~~~~l~s~~----~d-g~v~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~ 93 (136)
.++|--||.+++... .+ ..|++||-+ |. +...... ...=.+++|-|.|.++++-
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~i 259 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAI 259 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeee
Confidence 589999998887732 23 679999977 32 2222221 2333689999999988874
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.04 E-value=58 Score=28.18 Aligned_cols=31 Identities=16% Similarity=0.440 Sum_probs=25.7
Q ss_pred cceeEEEEeCCC---CEEEEEcCCCcEEEEeCCC
Q 041215 34 YSVNSLNFHPIH---HTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 34 ~~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~ 64 (136)
-.|..+.|||.+ ..|+.=.+|+.+++||+..
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 378899999986 5677777889999999865
No 404
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=55.49 E-value=87 Score=24.93 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=36.3
Q ss_pred eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee--ccc------CCCceeEEEEc
Q 041215 22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA--MSR------CGQPIPCSTFN 84 (136)
Q Consensus 22 ~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~------h~~~v~~v~~s 84 (136)
..+...++ +|++++.+ +--+++.|..+|.+-+.|++.-..++. +.. ....+.++.|+
T Consensus 80 ~l~~~~~g-----~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 80 TLLDAKQG-----PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp EEE---S------SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred hheeccCC-----cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 33444566 89999886 557899999999999999976555543 222 24577888886
No 405
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=55.15 E-value=23 Score=16.69 Aligned_cols=26 Identities=0% Similarity=0.088 Sum_probs=16.6
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFW 60 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vw 60 (136)
....+++.++|+.+++-.....|.+|
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 34667777777777766655555543
No 406
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=53.76 E-value=1.3e+02 Score=26.09 Aligned_cols=66 Identities=21% Similarity=0.167 Sum_probs=45.0
Q ss_pred ccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec----c---------------cCCCceeEEEEccCCCEEEEE
Q 041215 33 IYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM----S---------------RCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 33 ~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~----~---------------~h~~~v~~v~~sp~~~~l~s~ 93 (136)
...|.++.....+..++-.-.||.|.++|-.+.+.+... . .+-.++..|+|||.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 336778888877888999999999999986655333222 0 011244568899999888765
Q ss_pred Ecccc
Q 041215 94 VCYDW 98 (136)
Q Consensus 94 ~~dd~ 98 (136)
..++-
T Consensus 339 ~~~~~ 343 (753)
T PF11635_consen 339 DEDGK 343 (753)
T ss_pred ecCCC
Confidence 54443
No 407
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=53.05 E-value=41 Score=21.15 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=12.2
Q ss_pred eeEEEEeCCCCEEEEEcCCC
Q 041215 36 VNSLNFHPIHHTFATAGSDG 55 (136)
Q Consensus 36 v~~l~~~p~~~~l~s~~~dg 55 (136)
..+--|+++|.+++++..++
T Consensus 83 ~~~~l~~~~G~LvAs~~Q~~ 102 (104)
T cd03444 83 VEGRIFTRDGELVASVAQEG 102 (104)
T ss_pred EEEEEECCCCCEEEEEEEee
Confidence 34555667777777666544
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=52.92 E-value=58 Score=25.29 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=34.8
Q ss_pred ceeEEEEeCCCCEEEEEcCC-------------------CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSD-------------------GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~d-------------------g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....+.|.|+|.+.++.+.. +.|.-++...+.. ..+.........++|++++.++++-
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence 36789999999877766631 2233334433322 2222222345689999999988753
No 409
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=52.66 E-value=1.1e+02 Score=23.94 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=51.2
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCE-EEEEcCCCcEEEEeCCCcceee-e---cccCCCceeEEEE
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHT-FATAGSDGAFNFWDKDSKQRLK-A---MSRCGQPIPCSTF 83 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~-l~s~~~dg~v~vwd~~~~~~~~-~---~~~h~~~v~~v~~ 83 (136)
.++.+|..+++.......-.. + ..+++.|+|.. +++-..++.|.++|........ . ...-...-..+.+
T Consensus 141 ~vsvid~~t~~~~~~~~vG~~-----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 141 TVSVIDAATNKVTATIPVGNT-----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred eEEEEeCCCCeEEEEEecCCC-----c-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence 334488877777666433223 4 78999999974 4455567889999976654432 1 0111223356889
Q ss_pred ccCCCEEEEEEccc
Q 041215 84 NTDGSIFAYSVCYD 97 (136)
Q Consensus 84 sp~~~~l~s~~~dd 97 (136)
+|++..+-..-...
T Consensus 215 ~~~g~~~yV~~~~~ 228 (381)
T COG3391 215 DPDGNRVYVANDGS 228 (381)
T ss_pred CCCCCEEEEEeccC
Confidence 99998555444444
No 410
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=52.35 E-value=27 Score=16.74 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=17.8
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFW 60 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vw 60 (136)
.|.+++..+ .+++.+.+.+.+++|
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEec
Confidence 567777764 577777777888887
No 411
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=51.76 E-value=1e+02 Score=23.22 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=45.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeeecc--cCCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKAMS--RCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~--~h~~~v 78 (136)
++....+.++.++... .+.....+.. ...+.++.. .+.+++.++....+.++.+.. ...+..+. ....++
T Consensus 103 ~~~g~~l~v~~l~~~~--~l~~~~~~~~---~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v 175 (321)
T PF03178_consen 103 VAVGNKLYVYDLDNSK--TLLKKAFYDS---PFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWV 175 (321)
T ss_dssp EEETTEEEEEEEETTS--SEEEEEEE-B---SSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEE
T ss_pred EeecCEEEEEEccCcc--cchhhheecc---eEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccE
Confidence 3456677776665554 2222222333 013444444 467888888877777664432 22122222 224568
Q ss_pred eEEEEccCCCEEEEEEcc
Q 041215 79 PCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~d 96 (136)
.++.|-.++..++.+..+
T Consensus 176 ~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp EEEEEE-SSSEEEEEETT
T ss_pred EEEEEecCCcEEEEEcCC
Confidence 888887666666644443
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=51.39 E-value=1.1e+02 Score=23.63 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=33.6
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-c-eeeecccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-Q-RLKAMSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~-~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
.+..+.+.|++.+++.+ ..|.+.. ....+ . -......-...++++.+.++++.++.+.
T Consensus 174 ~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred eEEEEEECCCCeEEEEe-CCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec
Confidence 56778888887666555 4454332 11222 1 1111223346789999999988777654
No 413
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=51.19 E-value=1.1e+02 Score=24.55 Aligned_cols=83 Identities=10% Similarity=-0.015 Sum_probs=40.1
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF 83 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 83 (136)
.||.-.++.+|..+++... |....+ .......++|+++.++-......|.-.|+.+++....+......+-...|
T Consensus 56 ~dg~~nly~lDL~t~~i~Q-LTdg~g----~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~ 130 (386)
T PF14583_consen 56 FDGNRNLYLLDLATGEITQ-LTDGPG----DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTW 130 (386)
T ss_dssp TTSS-EEEEEETTT-EEEE----SS-----B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEE
T ss_pred cCCCcceEEEEcccCEEEE-CccCCC----CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccce
Confidence 3555555666665544332 222221 02234566788877655545556777788887654445555566655666
Q ss_pred c--cCCCEEE
Q 041215 84 N--TDGSIFA 91 (136)
Q Consensus 84 s--p~~~~l~ 91 (136)
. .++..++
T Consensus 131 v~n~d~t~~~ 140 (386)
T PF14583_consen 131 VANSDCTKLV 140 (386)
T ss_dssp EE-TTSSEEE
T ss_pred eeCCCccEEE
Confidence 4 4566554
No 414
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=50.77 E-value=1.3e+02 Score=25.28 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=31.5
Q ss_pred eEEEEeCCCCEEEEEcCC-C-----cEEEEeCCCcceee--ecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 37 NSLNFHPIHHTFATAGSD-G-----AFNFWDKDSKQRLK--AMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 37 ~~l~~~p~~~~l~s~~~d-g-----~v~vwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
.+++... +..+++|+.+ | .+..||.....-.. .+.......-.+ .-+|.++|.|+.+++.
T Consensus 326 ~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~ 393 (571)
T KOG4441|consen 326 VGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEK 393 (571)
T ss_pred ccEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--EECCEEEEEecccccc
Confidence 3444443 4778888888 2 35566665543222 111111111111 2378888888888654
No 415
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=48.88 E-value=36 Score=17.16 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=14.7
Q ss_pred CCEEEEEcCCCcEEEEeCCC
Q 041215 45 HHTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 45 ~~~l~s~~~dg~v~vwd~~~ 64 (136)
+..++.++.||.+..+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 46788888899999988753
No 416
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=48.56 E-value=1.1e+02 Score=25.37 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=28.7
Q ss_pred CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 46 HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 46 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
+-+++-+..|.+.++.......+ -+..--.....+++||.+.++++-..
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~l-L~~~~~~~~~~~~~Sp~~~~Ll~e~~ 377 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKLL-LFERAYQAPQLVAMSPNQAYLLSEDQ 377 (733)
T ss_pred ceEEEEcCCCceeeeecccCcce-ehhhhhcCcceeeeCcccchheeecC
Confidence 45666667777777654443222 11112235677889999888876433
No 417
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=47.87 E-value=1.3e+02 Score=23.41 Aligned_cols=84 Identities=11% Similarity=-0.055 Sum_probs=44.0
Q ss_pred EEEEeeCCCCcceeE-EEeeeCCCCccceeEEEEeCCCCEEEEEcCCC-----------cEEEEeCCCcce--eeecccC
Q 041215 9 GVHHLDDSQQSKNFT-FKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG-----------AFNFWDKDSKQR--LKAMSRC 74 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~-l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg-----------~v~vwd~~~~~~--~~~~~~h 74 (136)
.+..+|..+++.+.. +..- ....+.|.+++..|+-...+. .|.+|.+-+... .-.+...
T Consensus 151 ~l~v~Dl~tg~~l~d~i~~~-------~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~ 223 (414)
T PF02897_consen 151 TLRVFDLETGKFLPDGIENP-------KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP 223 (414)
T ss_dssp EEEEEETTTTEEEEEEEEEE-------ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T
T ss_pred EEEEEECCCCcCcCCccccc-------ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec
Confidence 344477776654432 1211 223499999986554444322 266777655422 1223232
Q ss_pred C--CceeEEEEccCCCEEEEEEccccc
Q 041215 75 G--QPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 75 ~--~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
. .....+..++++++++..+.....
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~~~~ 250 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSSGTS 250 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEESSSS
T ss_pred CCCcEEEEEEecCcccEEEEEEEcccc
Confidence 2 225688899999987765444433
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=47.75 E-value=1.8e+02 Score=24.92 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=35.8
Q ss_pred ceeEEEEeCCCCEEEEEcCC-CcEEEEeCCCcceeeecc-cCCCceeEEEEc--cCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSD-GAFNFWDKDSKQRLKAMS-RCGQPIPCSTFN--TDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~-~h~~~v~~v~~s--p~~~~l~s~~ 94 (136)
.+.-+.-+..+. ++....+ ..+.|||...+...++-. ...+.|..+.|. |+++.+++-+
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG 93 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG 93 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE
Confidence 334444444433 3344444 469999998876544332 346889999995 6777655443
No 419
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=46.78 E-value=17 Score=32.28 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=30.8
Q ss_pred EeCCCCEEEEEcCCCcEEEEeCCC-----cceeeecccCC-CceeEEEEc
Q 041215 41 FHPIHHTFATAGSDGAFNFWDKDS-----KQRLKAMSRCG-QPIPCSTFN 84 (136)
Q Consensus 41 ~~p~~~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~h~-~~v~~v~~s 84 (136)
++|||..|+.+..||.+++|...- ..+++....|. .+-.|..|+
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~ 292 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCH 292 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeec
Confidence 799999999999999999887642 24455666665 444444444
No 420
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=46.63 E-value=1.6e+02 Score=24.05 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=37.2
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeecc----c-CCCceeEEEEccCC
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAMS----R-CGQPIPCSTFNTDG 87 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~----~-h~~~v~~v~~sp~~ 87 (136)
..+.|+|.|++++|++-...|.|++++-.++.. +..+. . ..+-+..|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 568999999999888886678898887554321 21121 1 24667899999875
No 421
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=46.48 E-value=1.3e+02 Score=23.04 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=35.2
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCC-Ccceeee----cccCCCceeEEEEccCCCEEEEEEcc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKD-SKQRLKA----MSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~-~~~~~~~----~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
+|..|.|.|++.+.+.+ ..|.|++=+.. ....-.. ...-.--+..++|.++...+++|++.
T Consensus 188 riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 188 RIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred eehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 79999999998876655 77888776522 2221111 11122347899999999888877553
No 422
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=45.59 E-value=27 Score=29.49 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=23.3
Q ss_pred ceeEEEEeCCCC-EEEEEcCCCcEEEEeCCC
Q 041215 35 SVNSLNFHPIHH-TFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 35 ~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~ 64 (136)
.|.|.+|.+||+ ++++.++.-.-++||-..
T Consensus 157 ~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 157 LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 789999999994 566666666688998654
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=44.90 E-value=1.3e+02 Score=23.31 Aligned_cols=58 Identities=7% Similarity=0.114 Sum_probs=36.5
Q ss_pred ceeEEEEeCCCCEEEEEc-----------CCC-cEEEEeCCC--cce--eeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAG-----------SDG-AFNFWDKDS--KQR--LKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~-----------~dg-~v~vwd~~~--~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....|+|.++|+++++.. ..+ .|.+++-.+ |.. ...+-......+.|++.+++ ++++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~ 88 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVAT 88 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeC
Confidence 567899999999888763 223 566665433 322 23333333456888898888 66654
No 424
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=43.65 E-value=79 Score=22.97 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=22.8
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSK 65 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~ 65 (136)
+|..+...|.-+.|+.-+ |+.+.++++...
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence 688888888777666554 489999997654
No 425
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=43.11 E-value=57 Score=25.98 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCcEEEEeCCCcceeeecccCC----CceeEEEEccCCCEEEEEEccccc
Q 041215 44 IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG----QPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 44 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~----~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
.+..|++-..+|.++++.+...+.+..+.... ..+....++++|+.+...+.....
T Consensus 271 ~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~ 330 (395)
T PF08596_consen 271 GGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQ 330 (395)
T ss_dssp EEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEE
T ss_pred CceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcccEE
Confidence 45788888999999999998877776654431 344567788999988776555533
No 426
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.56 E-value=19 Score=32.68 Aligned_cols=66 Identities=8% Similarity=-0.027 Sum_probs=42.8
Q ss_pred eeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc-eeeecccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215 36 VNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ-RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 36 v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
..++.|+|.- ...+.+..|+.|++.-+.... .+..+ ......+||+|+|.|..++.|-..+..+++
T Consensus 158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQY 225 (1405)
T ss_pred cccccccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEe
Confidence 4577888766 345566677777776543221 11111 234677999999999999988777765544
No 427
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=41.01 E-value=90 Score=23.50 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCEEEEEcCCCcEEEE
Q 041215 36 VNSLNFHPIHHTFATAGSDGAFNFW 60 (136)
Q Consensus 36 v~~l~~~p~~~~l~s~~~dg~v~vw 60 (136)
+..--|+++|.+++++..++.++..
T Consensus 261 ~~g~i~~~~G~LvAs~~Qegl~r~~ 285 (286)
T PRK10526 261 VRGEFYTQDGVLVASTVQEGVMRNH 285 (286)
T ss_pred EEEEEECCCCCEEEEEEeeEEEEec
Confidence 4555678999999999988887753
No 428
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=39.59 E-value=1.6e+02 Score=22.14 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=41.8
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCC------cceeeecccCCCceeEEEEcc--CCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDS------KQRLKAMSRCGQPIPCSTFNT--DGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~------~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~ 93 (136)
....++..++|.++++--....|..|+... ...+.+-...-.++..+.+.+ ++.+.+.+
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 556889999999998988899999999875 122333323346889999999 88877765
No 429
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=38.91 E-value=1.5e+02 Score=24.58 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=33.5
Q ss_pred eeEEEEeCCCCEEEEEcCCCcE-E---------EEeC-------------CCcceeeeccc-CCCceeEEEEccCCCEEE
Q 041215 36 VNSLNFHPIHHTFATAGSDGAF-N---------FWDK-------------DSKQRLKAMSR-CGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 36 v~~l~~~p~~~~l~s~~~dg~v-~---------vwd~-------------~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~ 91 (136)
...|.|.|+|.++++-..++.. . +|.+ .++....-+.. ..+.++.++|+|+++.|.
T Consensus 438 PDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlF 517 (524)
T PF05787_consen 438 PDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLF 517 (524)
T ss_pred CCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECCCCCEEE
Confidence 3468899999877776654431 1 1111 12222222222 257889999999998766
Q ss_pred E
Q 041215 92 Y 92 (136)
Q Consensus 92 s 92 (136)
.
T Consensus 518 v 518 (524)
T PF05787_consen 518 V 518 (524)
T ss_pred E
Confidence 4
No 430
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=38.71 E-value=2.1e+02 Score=23.17 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=38.4
Q ss_pred CceeceEEEEEeeCCCCcceeEE----Eee--eCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTF----KCH--RDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l----~~h--~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~ 64 (136)
++.+|.+.+..|+..+......+ ... ........-..++.+|.++.++.+..++.+.++-+..
T Consensus 6 ~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~ 74 (504)
T PF10433_consen 6 TTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNR 74 (504)
T ss_dssp EETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS
T ss_pred EECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEecc
Confidence 56788888888887544432211 111 1112222345789999999999999999999988766
No 431
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=38.64 E-value=2.6e+02 Score=24.49 Aligned_cols=46 Identities=15% Similarity=0.069 Sum_probs=30.1
Q ss_pred CCCEEEE-EcCCCcEEEEeCCCcceeeecccCC-CceeEEEEc-cCCCE
Q 041215 44 IHHTFAT-AGSDGAFNFWDKDSKQRLKAMSRCG-QPIPCSTFN-TDGSI 89 (136)
Q Consensus 44 ~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v~~s-p~~~~ 89 (136)
.+.+++. +..|+.++.+|.++|+.+-+..... ..-.=+.|. .+|++
T Consensus 690 agglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~tY~~~~GkQ 738 (764)
T TIGR03074 690 AGGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMTYMGKDGKQ 738 (764)
T ss_pred cCCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEEEEecCCEE
Confidence 3456665 6789999999999999886664332 111224465 57764
No 432
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=37.81 E-value=97 Score=23.90 Aligned_cols=65 Identities=9% Similarity=0.112 Sum_probs=37.8
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeee--CCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHR--DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG 75 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~--~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~ 75 (136)
+.||.+ +-+|+.++..+.....-. . .+..-.+..+|+ ++.++.++.++++|..+|..+-.+....
T Consensus 75 ~~~G~i--~A~d~~~g~~~W~~~~~~~~~-----~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 75 TRDGNI--FALNPDTGLVKWSYPLLGAVA-----QLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred cCCCcE--EEEeCCCCcEEecccCcCcce-----eccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence 456644 447777777654433221 1 222222333555 6677788888888988887776555443
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.35 E-value=1.1e+02 Score=25.32 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=37.4
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee----eecccCCCceeEEEEccCC
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL----KAMSRCGQPIPCSTFNTDG 87 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~----~~~~~h~~~v~~v~~sp~~ 87 (136)
+|.++.|++|...|+....+..|.+++....+.. ++.......|....|+.+.
T Consensus 68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~ 124 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST 124 (657)
T ss_pred ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe
Confidence 8999999999999999999999999988432221 1122223446666776653
No 434
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=35.99 E-value=2.7e+02 Score=24.99 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=37.4
Q ss_pred ceeEEEEeCCCCEEEE-EcCCC-----cEEEEeCCC-cceeeecccCCCceeEEEEccCCCEEE
Q 041215 35 SVNSLNFHPIHHTFAT-AGSDG-----AFNFWDKDS-KQRLKAMSRCGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s-~~~dg-----~v~vwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~ 91 (136)
+|-.-+|+|||+.|+= .+..+ .|.+-++.+ +..+..+.-.+..|..-...++|..++
T Consensus 351 ~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~i 414 (912)
T TIGR02171 351 SVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVI 414 (912)
T ss_pred ceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCeEE
Confidence 7888899999976665 44443 477778765 333445555566677666677776433
No 435
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=35.77 E-value=1.6e+02 Score=21.92 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=36.5
Q ss_pred eEEEEeCCCCEEEEEcCC-C--cEEEEeCCC---cceeeec---ccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 37 NSLNFHPIHHTFATAGSD-G--AFNFWDKDS---KQRLKAM---SRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 37 ~~l~~~p~~~~l~s~~~d-g--~v~vwd~~~---~~~~~~~---~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
.+-.+-++|++|.+|+.. | .+++++-.. ...-.+. .....+=.++..=+||+.++.|+.....
T Consensus 70 Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t 141 (243)
T PF07250_consen 70 SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPT 141 (243)
T ss_pred cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCc
Confidence 345677899999998873 2 377776443 1000111 0112233345556799999988887443
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=35.15 E-value=79 Score=21.76 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=23.5
Q ss_pred ceeEEEEeCCC------CEEEEEcCCCcEEEEeCC
Q 041215 35 SVNSLNFHPIH------HTFATAGSDGAFNFWDKD 63 (136)
Q Consensus 35 ~v~~l~~~p~~------~~l~s~~~dg~v~vwd~~ 63 (136)
.+..++|+|.| .+|+.-..++.|.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 57889999977 268888888999998755
No 437
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=34.78 E-value=1.2e+02 Score=23.30 Aligned_cols=57 Identities=9% Similarity=0.039 Sum_probs=33.6
Q ss_pred CceeceEEEEEeeC--CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEE
Q 041215 2 GSIEGRVGVHHLDD--SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60 (136)
Q Consensus 2 gs~dG~v~i~~~d~--~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vw 60 (136)
+|.|.++ |.... -+.+.++...+.....-.--+..--|+.+|.++++....|.++..
T Consensus 227 aSLDHs~--wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf~r~G~LiA~~~QEG~~r~~ 285 (289)
T COG1946 227 ASLDHSM--WFHRPFRLDDWLLYAQESPSASGGRGLVRGQLFDRDGQLIASVVQEGLIRYH 285 (289)
T ss_pred eeccceE--EEeccccCCCEEEEEeeCCcccCCcceeeeEEEcCCCCEEEEEeeeEEEecc
Confidence 4555554 44443 245667766543221111145566778888999999888877653
No 438
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=34.14 E-value=1.1e+02 Score=24.88 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=38.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeC-CCCccc-ee-EEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRD-GSEIYS-VN-SLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~-~~~~~~-v~-~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 72 (136)
++.+|.+.. +|..+++.+..+..... ...... +. .+.+. ++..++.++.++.|..+|.++|+.+-.+.
T Consensus 67 ~~~~g~l~A--lD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 67 TTSHSALFA--LDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred eCCCCcEEE--EECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 344565544 78888887776643221 000000 00 11111 22567777788999999999998775543
No 439
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.06 E-value=83 Score=23.89 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=26.9
Q ss_pred cEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 56 AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 56 ~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.|.+||..+.+-..--.+-.+.|+.|.|..+.++++.|
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G 54 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGG 54 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEE
Confidence 38889987765443334456889999998776677765
No 440
>PHA02713 hypothetical protein; Provisional
Probab=32.67 E-value=2.4e+02 Score=23.43 Aligned_cols=95 Identities=6% Similarity=0.001 Sum_probs=0.0
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC------CcEEEEeCCC---cceeeecccCCCcee
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD------GAFNFWDKDS---KQRLKAMSRCGQPIP 79 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d------g~v~vwd~~~---~~~~~~~~~h~~~v~ 79 (136)
.+..||+.+.+=...-.-... ........-++...+.|+.+ ..+..||..+ ...+..++.....+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~-----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTG-----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred eEEEECCCCCeEeecCCCCcc-----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Q ss_pred EEEEccCCCEEEEEEcccccccccccCCCCCc
Q 041215 80 CSTFNTDGSIFAYSVCYDWSKGAENHNPATAK 111 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~ 111 (136)
.+.+ ++.+++.|+-++.. ..+.+.|++.+
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~-~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYM-LQDTFNVYTYE 536 (557)
T ss_pred eEEE--CCEEEEEeeeccee-ehhhcCccccc
No 441
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=32.16 E-value=2.9e+02 Score=22.83 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=39.3
Q ss_pred EEEEeeCCCCcceeEEEeeeC----CCCccceeEEEEeCCCC---EEEEEcCCCcEEEEeCCCccee
Q 041215 9 GVHHLDDSQQSKNFTFKCHRD----GSEIYSVNSLNFHPIHH---TFATAGSDGAFNFWDKDSKQRL 68 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~----~~~~~~v~~l~~~p~~~---~l~s~~~dg~v~vwd~~~~~~~ 68 (136)
++.-+|+++++....|+.... ........=+.+..+|. .++.+..+|.+++.|-.+|+.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 344579999999888875222 11111222233334664 7889999999999999998875
No 442
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.81 E-value=1.7e+02 Score=22.23 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=27.7
Q ss_pred EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC-C-CEEEEEcCC
Q 041215 11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI-H-HTFATAGSD 54 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~-~-~~l~s~~~d 54 (136)
.-+|+.+++.+..++--.. .|++++|-.. - .+.+++..+
T Consensus 236 ~~~dp~tGK~L~eiklPt~-----qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTP-----QITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred EEECCCCCcEEEEEEcCCC-----ceEEEEecCCCccEEEEEehhc
Confidence 3468889999988887677 8999999643 2 355555543
No 443
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=30.60 E-value=2.6e+02 Score=24.52 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=41.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCC---ccceeEEEEeC----------------CCCEEEEEcCCCcEEEEeC
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE---IYSVNSLNFHP----------------IHHTFATAGSDGAFNFWDK 62 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~---~~~v~~l~~~p----------------~~~~l~s~~~dg~v~vwd~ 62 (136)
++.++.+ +-+|..+++.+..+........ ...+..+++.. .+..++.++.|+.|.-.|.
T Consensus 200 ~t~~~~V--~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA 277 (764)
T TIGR03074 200 CTPHNKV--IALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDA 277 (764)
T ss_pred ECCCCeE--EEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEEC
Confidence 3445554 3488888988887754322000 00122344421 1247778888999999999
Q ss_pred CCcceeeec
Q 041215 63 DSKQRLKAM 71 (136)
Q Consensus 63 ~~~~~~~~~ 71 (136)
.+|+.+-.+
T Consensus 278 ~TGk~~W~f 286 (764)
T TIGR03074 278 DTGKLCEDF 286 (764)
T ss_pred CCCCEEEEe
Confidence 999877555
No 444
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=30.08 E-value=1.4e+02 Score=21.93 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=14.8
Q ss_pred eeEEEEeCCCCEEEEEcCCCcE
Q 041215 36 VNSLNFHPIHHTFATAGSDGAF 57 (136)
Q Consensus 36 v~~l~~~p~~~~l~s~~~dg~v 57 (136)
+.+--|+.+|.++++...++.+
T Consensus 249 ~~~~l~d~~G~lvAs~~Qe~l~ 270 (271)
T TIGR00189 249 VEGKIFTRDGVLIASTVQEGLV 270 (271)
T ss_pred EEEEEECCCCCEEEEEEeeeec
Confidence 4455567777777777766654
No 445
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=30.00 E-value=2.3e+02 Score=20.84 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=38.4
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEe-CCCccee-eec--ccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWD-KDSKQRL-KAM--SRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd-~~~~~~~-~~~--~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
.+..-+|.+++...+....+...+++. ..++... ... ..-...|..+.+||||..+|.-.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence 567788999987776666666666664 2333221 111 11122899999999998766654
No 446
>PHA02790 Kelch-like protein; Provisional
Probab=28.85 E-value=3.2e+02 Score=22.17 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=26.0
Q ss_pred CCCEEEEEcCC--CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 44 IHHTFATAGSD--GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 44 ~~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
++...+.|+.+ ..+..||..+..-....+-...........-++.+++.|+.+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~ 372 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHS 372 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcC
Confidence 56677777754 347778865442221111111111112223467777777654
No 447
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=28.56 E-value=43 Score=28.72 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=34.7
Q ss_pred EEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccccc
Q 041215 59 FWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 59 vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
+=|+.+...+.+|..|..++..++|.+.+.++++++-.....
T Consensus 299 vkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nV 340 (788)
T KOG2109|consen 299 VKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNV 340 (788)
T ss_pred eecccchhhhhheeeecCcccccccccCceEEEEEeecccee
Confidence 336667777889999999999999999999999987766543
No 448
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=27.43 E-value=2.7e+02 Score=21.01 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=29.4
Q ss_pred EeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215 12 HLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 12 ~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 71 (136)
.||..+.+...++. ..+ .=+.++ .++..|...+-+..|.++|..+......+
T Consensus 114 ~yd~~tl~~~~~~~-y~~-----EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 114 VYDPNTLKKIGTFP-YPG-----EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp EEETTTTEEEEEEE--SS-----S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred EEccccceEEEEEe-cCC-----cceEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence 47887777777764 334 446776 35555555555667999998776554443
No 449
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=27.21 E-value=1.2e+02 Score=16.95 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=16.4
Q ss_pred ceeEEEEccCCCEEEEEEccc
Q 041215 77 PIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+.+++.-|+|++++.|....
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~ 22 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDN 22 (55)
T ss_pred ceEEEEECCCCcEEEEEEeec
Confidence 457888899999999886543
No 450
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=26.70 E-value=1.9e+02 Score=21.97 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=33.4
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
.+++|...++|.+|++...-..|.+.|-.+|+.+-.+.+.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 4778888889999999998899999998888887776544
No 451
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=25.93 E-value=17 Score=16.78 Aligned_cols=8 Identities=50% Similarity=1.016 Sum_probs=5.2
Q ss_pred EEccCCCE
Q 041215 82 TFNTDGSI 89 (136)
Q Consensus 82 ~~sp~~~~ 89 (136)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 36777764
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=25.63 E-value=3.9e+02 Score=23.26 Aligned_cols=28 Identities=25% Similarity=0.625 Sum_probs=25.2
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeC
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDK 62 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~ 62 (136)
+...++|+|.. ..|+..+..|.-.+|++
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEe
Confidence 66789999987 68999999999999999
No 453
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=25.29 E-value=3.1e+02 Score=20.91 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=39.9
Q ss_pred CCCccceeEEEEeCCCCEEEEEcCC-----C--c-------EEEE--eCCC-ccee----eeccc-----CCCceeEEEE
Q 041215 30 GSEIYSVNSLNFHPIHHTFATAGSD-----G--A-------FNFW--DKDS-KQRL----KAMSR-----CGQPIPCSTF 83 (136)
Q Consensus 30 ~~~~~~v~~l~~~p~~~~l~s~~~d-----g--~-------v~vw--d~~~-~~~~----~~~~~-----h~~~v~~v~~ 83 (136)
...|....+|+++|+|+.|+++... + . ++++ |..+ +... +.+.. ....+..+.+
T Consensus 143 ~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~a 222 (326)
T PF13449_consen 143 RRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAA 222 (326)
T ss_pred ccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEE
Confidence 3455578999999999865555432 2 1 4554 4433 2222 22221 3456778888
Q ss_pred ccCCCEEEEEEc
Q 041215 84 NTDGSIFAYSVC 95 (136)
Q Consensus 84 sp~~~~l~s~~~ 95 (136)
-+++++++.-..
T Consensus 223 l~d~~lLvLER~ 234 (326)
T PF13449_consen 223 LPDGRLLVLERD 234 (326)
T ss_pred ECCCcEEEEEcc
Confidence 888888876554
No 454
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=25.18 E-value=2.5e+02 Score=20.29 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEE
Q 041215 44 IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 44 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s 92 (136)
.+..|+.|..+| +.+++.......... ....+|..+...++-..++.
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llv 52 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLV 52 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEE
Confidence 457888888888 888888322221222 22334888888887665543
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.74 E-value=4.2e+02 Score=22.21 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=32.7
Q ss_pred eEEEEeCCCCEEEEEcCCCcEEEEeCCC--cc-eeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 37 NSLNFHPIHHTFATAGSDGAFNFWDKDS--KQ-RLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 37 ~~l~~~p~~~~l~s~~~dg~v~vwd~~~--~~-~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
+.+-|.-..+.|++..+ |.+.-|-+.- -. .+.......++|.+|.||+|.+.+|.-..+
T Consensus 26 ngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~ 87 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTS 87 (657)
T ss_pred cceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecC
Confidence 44444433344444433 3355554432 11 122222345799999999999999876443
No 456
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=23.80 E-value=1.8e+02 Score=21.31 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=27.8
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD 54 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d 54 (136)
..|-.+.+.....+....|..- + .|..+.++..|.+|++--.+
T Consensus 38 ~~Vev~~l~~~~~~~~~~F~Tv-~-----~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 38 CKVEVYDLEQEECPLLCTFSTV-G-----RVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred CEEEEEEcccCCCceeEEEcch-h-----heeEEEeccccceEEEEEee
Confidence 3455533333344555666543 4 89999999999999887543
No 457
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=23.57 E-value=2.3e+02 Score=19.03 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=23.9
Q ss_pred ceeEEEEeCCCCEEEEEcC-CCcEEEEeCCCcc-eeeeccc--CCCceeEEEEcc
Q 041215 35 SVNSLNFHPIHHTFATAGS-DGAFNFWDKDSKQ-RLKAMSR--CGQPIPCSTFNT 85 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~~~-~~~~~~~--h~~~v~~v~~sp 85 (136)
.+.---|.++...|+.++. |+.|++|.+.... .++.+.. ...+...++|-|
T Consensus 12 g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lP 66 (136)
T PF08954_consen 12 GVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLP 66 (136)
T ss_dssp S-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--
T ss_pred ceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecC
Confidence 3444556677766555554 6789999987653 2333332 245666777766
No 458
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=23.12 E-value=1.5e+02 Score=26.32 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=36.4
Q ss_pred EEEEcCCCcEEEEeCCCcceeeecc---cCCCceeEEEEccCCCEEEEEEccc
Q 041215 48 FATAGSDGAFNFWDKDSKQRLKAMS---RCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 48 l~s~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
++-++.+|.|.++...+........ .|...|++|.+.-.+-+++.++++.
T Consensus 638 ~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~ 690 (925)
T KOG3522|consen 638 FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDE 690 (925)
T ss_pred eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCE
Confidence 4566778999999887755544444 3568899999988887777665544
No 459
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=22.70 E-value=1.3e+02 Score=17.58 Aligned_cols=19 Identities=11% Similarity=0.377 Sum_probs=14.3
Q ss_pred ceeceEEEEEeeCCCCcce
Q 041215 3 SIEGRVGVHHLDDSQQSKN 21 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~ 21 (136)
..+|.|.|+.||..+++..
T Consensus 36 ~e~~~iKIfkyd~~tNei~ 54 (63)
T PF14157_consen 36 DEDGQIKIFKYDEDTNEIT 54 (63)
T ss_dssp -ETTEEEEEEEETTTTEEE
T ss_pred ecCCeEEEEEeCCCCCeEE
Confidence 3588999999998876553
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.94 E-value=3.6e+02 Score=23.00 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=23.1
Q ss_pred CCccceeEEEEeCCCCEEEEEcCCCcEEEE
Q 041215 31 SEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60 (136)
Q Consensus 31 ~~~~~v~~l~~~p~~~~l~s~~~dg~v~vw 60 (136)
..-+.|..+..++.|..++-.+.+|.+-++
T Consensus 101 ~V~feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 101 PVLFEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred cceEEEEEEEecCCCceEEEecCCeeEEEE
Confidence 334467789999999999889999875554
No 461
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=21.87 E-value=2.2e+02 Score=24.95 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCceeceEEEEEeeCCC--------CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEE
Q 041215 1 VGSIEGRVGVHHLDDSQ--------QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNF 59 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~--------~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~v 59 (136)
+|+.+|+|. +...... -+.+..|... . +|..|.+++....|+.++..+.+++
T Consensus 430 lGTd~G~vl-KvV~~~~~~~~~~~llEElqvf~~~-~-----pI~~m~Ls~~~~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 430 LGTDAGTVL-KVVSPGKESGKSNVLLEELQVFPDA-E-----PIRSMQLSSKRGSLYVGSRSGVVQV 489 (737)
T ss_pred EecCCCeEE-EEEecCCccCccceeEEEEeecCCC-C-----ceeEEEecccCCeEEEEccCcEEEe
No 462
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=21.76 E-value=4.2e+02 Score=21.99 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=46.0
Q ss_pred CCceeceEEEEEeeCCCCc-----ceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215 1 VGSIEGRVGVHHLDDSQQS-----KNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~-----~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
||..+|.+.|.+||+.... ..++++..=+ ..-+.=.+..|.|... ++..+...|. ++.++++..+..-..|
T Consensus 488 vG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~ws-pvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~kl~k~~e~ 564 (603)
T COG4880 488 VGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWS-PVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGSKLRKRAER 564 (603)
T ss_pred eecccCCceEEEEeccCCCCchhhhheehhhhcc-hhhhccceeecCCcccEEEecccCccE--EEEEecCceeeehhhh
Confidence 5778899999999986422 2233332111 0000113456666664 4445555555 4455666444444456
Q ss_pred CCceeEEEEccCCCEEE
Q 041215 75 GQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~ 91 (136)
...+...-|-.+.-+++
T Consensus 565 k~na~RA~fi~dylY~v 581 (603)
T COG4880 565 KLNADRAFFIKDYLYLV 581 (603)
T ss_pred cccceeeEEecceEEEe
Confidence 55555555655554444
No 463
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=21.35 E-value=3.6e+02 Score=20.62 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=35.1
Q ss_pred ceeEEEEeCC-------CCEEEEEcCCCcEEEEeCCCcceee---e-cccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPI-------HHTFATAGSDGAFNFWDKDSKQRLK---A-MSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~-------~~~l~s~~~dg~v~vwd~~~~~~~~---~-~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
.+..+.|... +.+|++.-..+.|....+.....+. . +......+..|++.|||.++++..
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD 324 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence 5566666532 3466666656667766665432221 2 223445899999999999888654
No 464
>PHA02790 Kelch-like protein; Provisional
Probab=21.32 E-value=4.5e+02 Score=21.30 Aligned_cols=22 Identities=5% Similarity=0.132 Sum_probs=14.1
Q ss_pred CCCEEEEEcCCC---cEEEEeCCCc
Q 041215 44 IHHTFATAGSDG---AFNFWDKDSK 65 (136)
Q Consensus 44 ~~~~l~s~~~dg---~v~vwd~~~~ 65 (136)
++...+.|+.++ .+..||..+.
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCC
Confidence 467777777553 3667876654
No 465
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=20.39 E-value=1.6e+02 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=25.0
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCC
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDS 64 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~ 64 (136)
.|..++..+..+.|++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 489999998889999999999999999974
No 466
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=20.20 E-value=4.1e+02 Score=20.41 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=32.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK 69 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~ 69 (136)
|+.+| .++.+|..++.....+.... . +.+..-..-.++. +...+.++.+...|..++...-
T Consensus 117 g~~~g--~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~-v~~~s~~g~~~al~~~tG~~~W 177 (370)
T COG1520 117 GSWDG--KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGT-VYVGTDDGHLYALNADTGTLKW 177 (370)
T ss_pred ecccc--eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcE-EEEecCCCeEEEEEccCCcEEE
Confidence 45666 44558887888887776544 0 1222223333332 3333356777777776665543
Done!