Query 041215
Match_columns 136
No_of_seqs 106 out of 1906
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mmy_A MRNA export factor; mRN 99.8 4.3E-20 1.5E-24 136.8 12.6 127 2-130 234-368 (368)
2 3ow8_A WD repeat-containing pr 99.6 2.9E-15 1E-19 111.7 10.9 95 2-103 182-276 (321)
3 3ow8_A WD repeat-containing pr 99.6 4.1E-15 1.4E-19 110.9 11.3 92 1-99 223-314 (321)
4 4gqb_B Methylosome protein 50; 99.6 7E-15 2.4E-19 111.1 11.8 95 1-102 98-197 (344)
5 2ynn_A Coatomer subunit beta'; 99.6 5.6E-15 1.9E-19 108.9 11.0 93 2-101 31-123 (304)
6 3vu4_A KMHSV2; beta-propeller 99.6 1.1E-14 3.7E-19 109.9 12.5 96 2-104 155-269 (355)
7 1got_B GT-beta; complex (GTP-b 99.6 6.7E-15 2.3E-19 110.1 11.1 95 2-103 160-254 (340)
8 2ynn_A Coatomer subunit beta'; 99.6 1.2E-14 4.1E-19 107.2 12.3 96 1-103 72-169 (304)
9 1vyh_C Platelet-activating fac 99.6 5.2E-15 1.8E-19 113.6 9.9 91 2-99 314-404 (410)
10 4g56_B MGC81050 protein; prote 99.6 7.4E-15 2.5E-19 111.0 10.5 93 2-102 245-339 (357)
11 4gqb_B Methylosome protein 50; 99.6 6E-15 2.1E-19 111.5 9.9 90 2-99 233-324 (344)
12 4h5i_A Guanine nucleotide-exch 99.6 1.1E-14 3.8E-19 110.4 11.2 89 9-102 246-339 (365)
13 1vyh_C Platelet-activating fac 99.6 7.5E-15 2.6E-19 112.7 10.4 94 2-102 126-219 (410)
14 2xzm_R RACK1; ribosome, transl 99.6 1.5E-14 5.2E-19 108.1 11.1 94 2-100 45-143 (343)
15 1yfq_A Cell cycle arrest prote 99.6 3E-14 1E-18 104.9 12.6 117 1-120 211-340 (342)
16 3frx_A Guanine nucleotide-bind 99.6 1.9E-14 6.5E-19 106.9 10.9 95 2-101 36-133 (319)
17 2pbi_B Guanine nucleotide-bind 99.6 4.3E-14 1.5E-18 106.5 12.1 95 2-103 172-268 (354)
18 4ery_A WD repeat-containing pr 99.5 9.7E-14 3.3E-18 101.8 12.3 93 2-101 83-175 (312)
19 4ery_A WD repeat-containing pr 99.5 9.6E-14 3.3E-18 101.9 11.7 94 2-102 41-134 (312)
20 1nr0_A Actin interacting prote 99.5 5.8E-14 2E-18 112.7 11.3 94 2-102 166-266 (611)
21 2ymu_A WD-40 repeat protein; u 99.5 9.2E-14 3.1E-18 109.3 11.5 88 2-98 34-121 (577)
22 3vl1_A 26S proteasome regulato 99.5 4.6E-14 1.6E-18 106.9 9.2 93 2-101 115-207 (420)
23 3fm0_A Protein CIAO1; WDR39,SG 99.5 2E-13 6.7E-18 102.4 12.3 96 2-102 34-132 (345)
24 2ymu_A WD-40 repeat protein; u 99.5 8E-14 2.7E-18 109.7 10.4 88 2-98 485-572 (577)
25 3k26_A Polycomb protein EED; W 99.5 2E-13 6.7E-18 100.9 11.9 92 2-100 91-186 (366)
26 3lrv_A PRE-mRNA-splicing facto 99.5 1.4E-13 4.8E-18 102.7 11.1 89 2-98 145-236 (343)
27 2pm7_B Protein transport prote 99.5 1.3E-13 4.6E-18 101.2 10.8 98 2-104 27-130 (297)
28 3fm0_A Protein CIAO1; WDR39,SG 99.5 1E-13 3.4E-18 104.0 10.1 94 2-100 79-175 (345)
29 2hes_X YDR267CP; beta-propelle 99.5 1.5E-13 5E-18 102.5 10.9 94 2-100 76-178 (330)
30 1got_B GT-beta; complex (GTP-b 99.5 2E-13 6.9E-18 102.0 11.6 95 2-103 202-298 (340)
31 2aq5_A Coronin-1A; WD40 repeat 99.5 1.9E-13 6.6E-18 103.7 11.0 95 1-102 99-203 (402)
32 2hes_X YDR267CP; beta-propelle 99.5 5.2E-13 1.8E-17 99.5 12.8 97 1-102 29-134 (330)
33 3iz6_a 40S ribosomal protein R 99.5 1.8E-13 6.1E-18 103.8 10.4 98 1-100 266-369 (380)
34 3iz6_a 40S ribosomal protein R 99.5 1.8E-13 6.2E-18 103.8 10.4 91 2-99 224-322 (380)
35 3dm0_A Maltose-binding peripla 99.5 2.7E-13 9.2E-18 110.0 11.1 94 1-99 400-496 (694)
36 2pbi_B Guanine nucleotide-bind 99.5 3.3E-13 1.1E-17 101.7 10.3 94 1-99 257-350 (354)
37 3bg1_A Protein SEC13 homolog; 99.5 2.6E-13 8.7E-18 100.6 9.6 94 2-100 31-130 (316)
38 4gga_A P55CDC, cell division c 99.5 9.7E-13 3.3E-17 100.7 13.0 91 2-100 297-389 (420)
39 3frx_A Guanine nucleotide-bind 99.5 4.6E-13 1.6E-17 99.4 10.6 88 2-97 172-259 (319)
40 4g56_B MGC81050 protein; prote 99.4 3.2E-13 1.1E-17 102.0 9.0 92 2-100 111-207 (357)
41 2w18_A PALB2, fancn, partner a 99.4 4.9E-13 1.7E-17 102.1 9.9 95 2-100 199-351 (356)
42 3f3f_A Nucleoporin SEH1; struc 99.4 8.9E-13 3.1E-17 96.0 10.8 98 2-104 29-141 (351)
43 2pm7_B Protein transport prote 99.4 1.1E-12 3.8E-17 96.3 11.3 96 2-102 119-234 (297)
44 3mmy_A MRNA export factor; mRN 99.4 2.5E-12 8.5E-17 94.8 12.7 96 2-103 60-157 (368)
45 4aow_A Guanine nucleotide-bind 99.4 7.7E-13 2.6E-17 97.1 9.8 91 4-99 12-110 (340)
46 2j04_B YDR362CP, TAU91; beta p 99.4 2.2E-13 7.7E-18 108.6 7.4 94 2-100 329-422 (524)
47 3jrp_A Fusion protein of prote 99.4 1.7E-12 5.7E-17 96.3 11.6 99 2-105 29-133 (379)
48 3f3f_A Nucleoporin SEH1; struc 99.4 9.7E-13 3.3E-17 95.8 9.9 97 2-105 188-336 (351)
49 1sq9_A Antiviral protein SKI8; 99.4 2E-12 6.7E-17 97.1 11.7 91 2-99 251-388 (397)
50 3odt_A Protein DOA1; ubiquitin 99.4 1.4E-12 4.9E-17 94.5 10.6 90 2-100 201-290 (313)
51 4aow_A Guanine nucleotide-bind 99.4 1.8E-12 6.3E-17 95.1 11.3 84 2-93 191-274 (340)
52 4ggc_A P55CDC, cell division c 99.4 4.5E-12 1.5E-16 92.1 13.1 91 2-100 217-309 (318)
53 1sq9_A Antiviral protein SKI8; 99.4 1.5E-12 5.1E-17 97.7 10.9 97 1-104 202-320 (397)
54 3dwl_C Actin-related protein 2 99.4 2.1E-13 7E-18 102.1 6.1 92 1-99 28-124 (377)
55 2xzm_R RACK1; ribosome, transl 99.4 2.7E-12 9.3E-17 95.8 12.0 90 2-99 94-196 (343)
56 3zwl_B Eukaryotic translation 99.4 2.1E-12 7.2E-17 95.2 11.2 87 2-96 50-136 (369)
57 4gq1_A NUP37; propeller, trans 99.4 2.1E-13 7.2E-18 104.1 5.9 99 2-105 107-217 (393)
58 3mkq_A Coatomer beta'-subunit; 99.4 1.3E-12 4.6E-17 106.4 10.9 91 2-99 31-121 (814)
59 1erj_A Transcriptional repress 99.4 1.8E-12 6.2E-17 98.7 10.6 94 2-102 225-337 (393)
60 3bg1_A Protein SEC13 homolog; 99.4 7.1E-13 2.4E-17 98.2 8.1 95 1-100 184-287 (316)
61 3ei3_B DNA damage-binding prot 99.4 3.8E-12 1.3E-16 95.6 12.2 96 2-106 181-282 (383)
62 1erj_A Transcriptional repress 99.4 2.5E-12 8.6E-17 97.9 11.3 93 2-102 141-234 (393)
63 1nr0_A Actin interacting prote 99.4 1.3E-12 4.5E-17 104.9 10.2 98 1-104 465-565 (611)
64 3v7d_B Cell division control p 99.4 2.1E-12 7.1E-17 99.3 10.7 94 1-102 137-232 (464)
65 1gxr_A ESG1, transducin-like e 99.4 4.9E-12 1.7E-16 92.4 11.6 94 2-102 115-210 (337)
66 3vl1_A 26S proteasome regulato 99.4 1.3E-12 4.4E-17 98.9 8.6 95 2-103 157-275 (420)
67 3dwl_C Actin-related protein 2 99.4 1.7E-12 5.9E-17 97.1 9.3 96 2-105 118-235 (377)
68 1pgu_A Actin interacting prote 99.4 1.5E-12 5E-17 102.6 8.8 90 2-99 506-607 (615)
69 2aq5_A Coronin-1A; WD40 repeat 99.4 3.5E-12 1.2E-16 96.8 10.5 94 2-100 53-157 (402)
70 1r5m_A SIR4-interacting protei 99.4 2.5E-12 8.5E-17 96.6 9.3 91 2-99 306-418 (425)
71 4e54_B DNA damage-binding prot 99.4 1.3E-12 4.4E-17 100.6 8.0 94 1-99 137-233 (435)
72 3k26_A Polycomb protein EED; W 99.4 7.1E-12 2.4E-16 92.4 11.6 97 2-100 40-141 (366)
73 2oaj_A Protein SNI1; WD40 repe 99.4 2E-12 6.8E-17 108.7 9.6 96 1-104 452-603 (902)
74 1k8k_C P40, ARP2/3 complex 41 99.4 5.4E-12 1.8E-16 93.6 10.6 91 2-99 26-120 (372)
75 3i2n_A WD repeat-containing pr 99.4 1.2E-12 4.2E-17 96.4 7.0 95 2-103 230-350 (357)
76 3gre_A Serine/threonine-protei 99.4 1.7E-12 5.7E-17 99.2 7.8 94 2-102 188-288 (437)
77 3lrv_A PRE-mRNA-splicing facto 99.3 1.2E-11 3.9E-16 92.3 11.8 99 2-105 91-200 (343)
78 1r5m_A SIR4-interacting protei 99.3 7.5E-12 2.6E-16 93.9 10.7 90 2-99 265-354 (425)
79 3v7d_B Cell division control p 99.3 9E-12 3.1E-16 95.8 11.3 92 2-102 286-377 (464)
80 2pm9_A Protein WEB1, protein t 99.3 1.9E-12 6.4E-17 97.6 7.1 94 2-102 233-333 (416)
81 2j04_B YDR362CP, TAU91; beta p 99.3 2.1E-12 7E-17 103.0 7.6 96 1-103 282-383 (524)
82 4e54_B DNA damage-binding prot 99.3 2.2E-12 7.4E-17 99.3 7.4 94 1-102 226-323 (435)
83 1k8k_C P40, ARP2/3 complex 41 99.3 4.7E-12 1.6E-16 93.9 8.9 92 2-99 160-267 (372)
84 1gxr_A ESG1, transducin-like e 99.3 1.3E-11 4.5E-16 90.1 11.1 91 2-100 159-249 (337)
85 2oaj_A Protein SNI1; WD40 repe 99.3 7.1E-12 2.4E-16 105.4 10.5 77 21-103 568-658 (902)
86 3sfz_A APAF-1, apoptotic pepti 99.3 1.1E-11 3.9E-16 105.5 11.8 90 2-98 633-724 (1249)
87 3zwl_B Eukaryotic translation 99.3 3.7E-11 1.3E-15 88.5 13.1 88 2-97 193-281 (369)
88 2xyi_A Probable histone-bindin 99.3 1.6E-11 5.6E-16 94.4 11.4 94 2-102 250-349 (430)
89 4a11_B DNA excision repair pro 99.3 1.8E-11 6.3E-16 91.5 11.4 94 2-102 162-272 (408)
90 3ei3_B DNA damage-binding prot 99.3 4.6E-11 1.6E-15 89.7 13.5 98 2-105 137-235 (383)
91 2oit_A Nucleoporin 214KDA; NH2 99.3 5.5E-12 1.9E-16 98.1 8.6 91 2-99 114-216 (434)
92 4gga_A P55CDC, cell division c 99.3 2.6E-11 8.9E-16 92.8 12.2 92 3-103 122-215 (420)
93 3jro_A Fusion protein of prote 99.3 1.8E-11 6E-16 100.8 11.9 98 2-104 27-130 (753)
94 3jrp_A Fusion protein of prote 99.3 3.8E-11 1.3E-15 88.9 12.3 96 2-102 121-236 (379)
95 4aez_A CDC20, WD repeat-contai 99.3 2E-11 6.9E-16 92.8 10.9 86 2-94 192-279 (401)
96 3dm0_A Maltose-binding peripla 99.3 1.3E-11 4.3E-16 100.2 10.3 87 2-96 537-623 (694)
97 1pgu_A Actin interacting prote 99.3 9.4E-12 3.2E-16 97.9 9.2 96 2-104 462-570 (615)
98 2j04_A TAU60, YPL007P, hypothe 99.3 2.2E-11 7.4E-16 98.2 11.1 93 1-100 102-205 (588)
99 2xyi_A Probable histone-bindin 99.3 2.3E-11 7.9E-16 93.5 10.4 91 1-98 295-402 (430)
100 4ggc_A P55CDC, cell division c 99.3 3.9E-11 1.3E-15 87.2 10.9 88 3-99 42-131 (318)
101 3mkq_A Coatomer beta'-subunit; 99.3 2.3E-11 7.8E-16 99.2 10.5 91 2-99 73-165 (814)
102 3sfz_A APAF-1, apoptotic pepti 99.3 3.9E-11 1.3E-15 102.2 12.2 94 2-102 675-770 (1249)
103 4a11_B DNA excision repair pro 99.3 3.9E-11 1.3E-15 89.7 10.7 94 2-102 205-361 (408)
104 2vdu_B TRNA (guanine-N(7)-)-me 99.3 2.5E-11 8.6E-16 93.6 9.6 94 2-103 167-268 (450)
105 2pm9_A Protein WEB1, protein t 99.3 3.6E-11 1.2E-15 90.6 10.0 94 2-102 184-290 (416)
106 1p22_A F-BOX/WD-repeat protein 99.2 1.1E-10 3.7E-15 89.6 12.5 93 1-104 148-240 (435)
107 2vdu_B TRNA (guanine-N(7)-)-me 99.2 4.9E-11 1.7E-15 92.0 10.5 95 2-101 121-224 (450)
108 3i2n_A WD repeat-containing pr 99.2 4.2E-11 1.4E-15 88.1 9.7 92 5-103 43-145 (357)
109 4aez_A CDC20, WD repeat-contai 99.2 6.7E-11 2.3E-15 89.9 11.0 90 2-100 152-242 (401)
110 3dw8_B Serine/threonine-protei 99.2 2.6E-11 9.1E-16 92.2 8.7 90 1-98 45-199 (447)
111 3odt_A Protein DOA1; ubiquitin 99.2 5.3E-11 1.8E-15 86.1 9.5 88 2-100 161-249 (313)
112 3dw8_B Serine/threonine-protei 99.2 5.7E-11 1.9E-15 90.4 9.7 91 4-102 196-311 (447)
113 2ovr_B FBW7, F-BOX/WD repeat p 99.2 6.7E-11 2.3E-15 90.8 9.3 88 2-98 335-430 (445)
114 1yfq_A Cell cycle arrest prote 99.2 1.1E-10 3.8E-15 85.7 10.1 92 2-100 166-276 (342)
115 3vu4_A KMHSV2; beta-propeller 99.2 1.1E-10 3.7E-15 87.9 10.1 91 2-99 213-329 (355)
116 1p22_A F-BOX/WD-repeat protein 99.2 1.9E-10 6.5E-15 88.2 10.7 89 1-100 271-359 (435)
117 4gq1_A NUP37; propeller, trans 99.2 5.8E-11 2E-15 90.5 7.7 93 2-97 273-381 (393)
118 4h5i_A Guanine nucleotide-exch 99.1 3.7E-10 1.3E-14 85.4 10.8 87 2-97 153-241 (365)
119 3jro_A Fusion protein of prote 99.1 2.6E-10 8.9E-15 93.8 10.0 94 1-99 118-231 (753)
120 2ovr_B FBW7, F-BOX/WD repeat p 99.1 5.6E-10 1.9E-14 85.6 10.7 88 2-100 215-302 (445)
121 3gre_A Serine/threonine-protei 99.1 7.8E-10 2.7E-14 84.3 10.5 101 1-101 128-240 (437)
122 2oit_A Nucleoporin 214KDA; NH2 99.1 6E-10 2E-14 86.6 8.9 85 2-94 168-259 (434)
123 1l0q_A Surface layer protein; 99.1 1.7E-09 5.8E-14 81.1 11.0 86 2-96 8-94 (391)
124 2w18_A PALB2, fancn, partner a 99.0 1.1E-09 3.9E-14 83.5 9.9 84 5-94 156-245 (356)
125 3bws_A Protein LP49; two-domai 99.0 1E-09 3.5E-14 83.3 7.5 87 2-95 140-231 (433)
126 2j04_A TAU60, YPL007P, hypothe 98.9 2.6E-09 8.8E-14 86.2 8.1 83 1-94 146-243 (588)
127 2ojh_A Uncharacterized protein 98.9 1.6E-08 5.5E-13 71.9 10.9 84 3-95 19-104 (297)
128 3bws_A Protein LP49; two-domai 98.9 2E-08 6.9E-13 76.1 11.6 86 2-95 187-273 (433)
129 2hqs_A Protein TOLB; TOLB, PAL 98.8 5.1E-08 1.7E-12 74.9 12.3 80 6-94 159-241 (415)
130 1l0q_A Surface layer protein; 98.8 9.2E-08 3.2E-12 71.5 11.9 87 2-97 50-138 (391)
131 2hqs_A Protein TOLB; TOLB, PAL 98.7 1.6E-07 5.6E-12 72.1 12.3 82 9-97 204-288 (415)
132 1nir_A Nitrite reductase; hemo 98.7 1.7E-07 5.7E-12 74.8 11.7 86 2-96 155-246 (543)
133 2ojh_A Uncharacterized protein 98.7 9E-08 3.1E-12 67.9 9.1 89 2-96 147-237 (297)
134 3u4y_A Uncharacterized protein 98.6 2.8E-07 9.5E-12 67.4 10.1 85 3-95 17-103 (331)
135 1k32_A Tricorn protease; prote 98.6 4E-07 1.4E-11 77.2 10.6 82 9-96 359-441 (1045)
136 1k32_A Tricorn protease; prote 98.6 3.8E-07 1.3E-11 77.3 10.2 88 3-98 397-494 (1045)
137 1xfd_A DIP, dipeptidyl aminope 98.6 1.1E-07 3.9E-12 76.7 6.8 89 3-95 34-133 (723)
138 2ecf_A Dipeptidyl peptidase IV 98.6 3.4E-07 1.2E-11 74.2 9.5 88 7-95 63-171 (741)
139 1ri6_A Putative isomerase YBHE 98.5 9.7E-07 3.3E-11 64.2 10.7 85 3-95 12-103 (343)
140 3o4h_A Acylamino-acid-releasin 98.5 4E-07 1.4E-11 72.2 8.3 83 8-97 175-267 (582)
141 3u4y_A Uncharacterized protein 98.4 1.8E-06 6.2E-11 63.0 10.2 81 9-95 63-147 (331)
142 3hfq_A Uncharacterized protein 98.4 8.9E-07 3.1E-11 65.4 8.6 87 4-96 14-106 (347)
143 3hfq_A Uncharacterized protein 98.4 3.8E-06 1.3E-10 62.0 11.7 93 4-96 207-306 (347)
144 3vgz_A Uncharacterized protein 98.4 2.4E-06 8.4E-11 62.5 10.6 82 10-96 166-251 (353)
145 1jmx_B Amine dehydrogenase; ox 98.4 1.9E-06 6.4E-11 63.0 9.9 88 3-96 18-112 (349)
146 3vgz_A Uncharacterized protein 98.4 2.5E-06 8.5E-11 62.5 10.1 91 5-97 110-206 (353)
147 1pby_B Quinohemoprotein amine 98.4 1.3E-05 4.3E-10 58.1 12.9 80 9-96 220-300 (337)
148 1z68_A Fibroblast activation p 98.3 6E-07 2E-11 72.7 5.7 85 4-95 34-129 (719)
149 2ecf_A Dipeptidyl peptidase IV 98.3 3.1E-06 1.1E-10 68.6 9.4 82 10-97 131-230 (741)
150 1nir_A Nitrite reductase; hemo 98.3 8.3E-06 2.8E-10 65.0 10.6 86 2-95 196-299 (543)
151 1pby_B Quinohemoprotein amine 98.2 5.2E-06 1.8E-10 60.2 8.7 86 5-93 55-152 (337)
152 1ri6_A Putative isomerase YBHE 98.2 9.1E-06 3.1E-10 59.0 9.9 61 35-96 232-297 (343)
153 1xfd_A DIP, dipeptidyl aminope 98.2 1.4E-06 4.8E-11 70.3 5.7 80 11-97 94-194 (723)
154 4a5s_A Dipeptidyl peptidase 4 98.2 6.5E-06 2.2E-10 67.4 8.8 89 5-96 35-132 (740)
155 2z3z_A Dipeptidyl aminopeptida 98.2 3.7E-06 1.3E-10 67.8 7.2 84 4-96 99-201 (706)
156 2oiz_A Aromatic amine dehydrog 98.2 1E-05 3.5E-10 61.0 8.9 82 5-95 30-127 (361)
157 3scy_A Hypothetical bacterial 98.2 2.3E-05 7.7E-10 58.1 10.6 62 35-97 260-327 (361)
158 2oiz_A Aromatic amine dehydrog 98.1 1.7E-05 5.9E-10 59.8 9.9 73 8-88 286-360 (361)
159 1xip_A Nucleoporin NUP159; bet 98.1 1.6E-05 5.5E-10 61.3 9.4 81 4-99 104-184 (388)
160 1z68_A Fibroblast activation p 98.1 1.1E-05 3.9E-10 65.1 8.6 82 5-97 89-190 (719)
161 2z3z_A Dipeptidyl aminopeptida 98.1 3.6E-05 1.2E-09 62.0 10.7 90 8-97 284-377 (706)
162 3no2_A Uncharacterized protein 98.0 4.6E-05 1.6E-09 55.6 10.2 84 2-95 11-96 (276)
163 1jof_A Carboxy-CIS,CIS-muconat 98.0 8.5E-05 2.9E-09 55.5 11.9 86 4-95 117-212 (365)
164 3o4h_A Acylamino-acid-releasin 98.0 6.7E-06 2.3E-10 65.1 5.4 84 3-98 213-304 (582)
165 1jmx_B Amine dehydrogenase; ox 98.0 1.3E-05 4.3E-10 58.5 6.5 84 5-91 64-163 (349)
166 3azo_A Aminopeptidase; POP fam 98.0 2.9E-05 1E-09 62.1 8.9 87 6-98 159-264 (662)
167 1xip_A Nucleoporin NUP159; bet 98.0 2.2E-05 7.5E-10 60.5 7.8 78 2-92 142-230 (388)
168 1qks_A Cytochrome CD1 nitrite 98.0 0.00011 3.8E-09 59.1 11.7 84 4-96 175-264 (567)
169 3scy_A Hypothetical bacterial 97.9 0.00018 6E-09 53.2 11.7 86 3-95 24-117 (361)
170 3pe7_A Oligogalacturonate lyas 97.9 2.1E-05 7.1E-10 58.5 6.5 79 13-96 15-101 (388)
171 2gop_A Trilobed protease; beta 97.9 0.00014 4.6E-09 53.3 10.3 78 7-96 42-124 (347)
172 2dg1_A DRP35, lactonase; beta 97.9 0.00016 5.6E-09 52.7 10.3 71 21-96 37-107 (333)
173 4a5s_A Dipeptidyl peptidase 4 97.8 6.7E-05 2.3E-09 61.4 8.8 83 9-98 93-193 (740)
174 3pe7_A Oligogalacturonate lyas 97.8 5.1E-05 1.8E-09 56.4 7.4 84 5-93 57-142 (388)
175 2dg1_A DRP35, lactonase; beta 97.8 0.00046 1.6E-08 50.3 11.3 79 11-94 69-153 (333)
176 1jof_A Carboxy-CIS,CIS-muconat 97.7 0.00021 7E-09 53.4 9.4 61 36-96 256-330 (365)
177 2bkl_A Prolyl endopeptidase; m 97.7 0.00013 4.4E-09 59.3 8.5 61 37-97 171-248 (695)
178 3e5z_A Putative gluconolactona 97.7 0.00052 1.8E-08 49.4 10.2 80 5-93 49-132 (296)
179 2gop_A Trilobed protease; beta 97.6 0.00043 1.5E-08 50.6 9.6 80 6-95 83-189 (347)
180 1mda_H Methylamine dehydrogena 97.6 0.00024 8.1E-09 54.3 8.3 78 10-94 48-142 (368)
181 1q7f_A NHL, brain tumor CG1071 97.6 0.00081 2.8E-08 48.0 10.7 57 35-92 208-267 (286)
182 3azo_A Aminopeptidase; POP fam 97.6 0.0005 1.7E-08 54.9 10.4 83 8-95 217-313 (662)
183 2xdw_A Prolyl endopeptidase; a 97.6 0.00078 2.7E-08 54.7 11.5 82 9-96 152-253 (710)
184 1rwi_B Serine/threonine-protei 97.6 0.00087 3E-08 47.2 10.3 65 35-99 193-257 (270)
185 3g4e_A Regucalcin; six bladed 97.6 0.0011 3.6E-08 48.2 10.9 64 35-98 200-265 (297)
186 3fvz_A Peptidyl-glycine alpha- 97.5 0.00023 8E-09 52.5 7.1 81 11-97 221-313 (329)
187 3sjl_D Methylamine dehydrogena 97.5 0.00049 1.7E-08 53.0 8.4 81 5-94 58-155 (386)
188 2bkl_A Prolyl endopeptidase; m 97.5 0.00035 1.2E-08 56.7 7.9 63 35-97 122-189 (695)
189 3fvz_A Peptidyl-glycine alpha- 97.4 0.0019 6.4E-08 47.6 10.7 79 11-94 72-162 (329)
190 1pjx_A Dfpase, DIISOPROPYLFLUO 97.4 0.0015 5.2E-08 46.9 9.9 61 35-95 227-287 (314)
191 2mad_H Methylamine dehydrogena 97.4 0.0016 5.5E-08 49.4 10.4 79 9-94 48-143 (373)
192 1q7f_A NHL, brain tumor CG1071 97.4 0.0024 8.3E-08 45.5 10.7 62 35-97 165-228 (286)
193 2xdw_A Prolyl endopeptidase; a 97.4 0.00063 2.2E-08 55.3 8.2 62 35-97 126-192 (710)
194 3c5m_A Oligogalacturonate lyas 97.4 0.00024 8.2E-09 52.6 5.1 85 13-97 15-102 (396)
195 3e5z_A Putative gluconolactona 97.3 0.0019 6.6E-08 46.4 9.5 70 18-94 17-87 (296)
196 3c5m_A Oligogalacturonate lyas 97.3 0.0026 8.8E-08 46.9 9.8 83 6-95 166-257 (396)
197 3dsm_A Uncharacterized protein 97.2 0.0024 8.2E-08 47.1 9.3 83 5-95 151-244 (328)
198 3c75_H MADH, methylamine dehyd 97.1 0.0014 4.7E-08 51.1 7.5 80 6-94 99-195 (426)
199 1yr2_A Prolyl oligopeptidase; 97.0 0.0067 2.3E-07 49.6 10.9 83 8-97 189-289 (741)
200 3no2_A Uncharacterized protein 97.0 0.0084 2.9E-07 43.4 10.2 81 5-94 145-231 (276)
201 1rwi_B Serine/threonine-protei 96.9 0.0069 2.4E-07 42.4 8.7 61 35-95 151-211 (270)
202 1yiq_A Quinohemoprotein alcoho 96.8 0.0082 2.8E-07 49.1 9.3 83 5-95 454-538 (689)
203 3nol_A Glutamine cyclotransfer 96.7 0.035 1.2E-06 40.5 11.4 98 5-105 143-253 (262)
204 2ghs_A AGR_C_1268P; regucalcin 96.6 0.027 9.1E-07 41.4 10.7 60 35-95 231-291 (326)
205 3dsm_A Uncharacterized protein 96.6 0.017 5.8E-07 42.5 9.5 80 5-93 63-147 (328)
206 1qks_A Cytochrome CD1 nitrite 96.6 0.027 9.3E-07 45.2 10.9 62 2-71 214-282 (567)
207 3g4e_A Regucalcin; six bladed 96.5 0.068 2.3E-06 38.5 12.0 59 35-95 55-117 (297)
208 2qe8_A Uncharacterized protein 96.3 0.048 1.6E-06 40.2 10.5 63 35-97 249-312 (343)
209 1yr2_A Prolyl oligopeptidase; 96.3 0.011 3.9E-07 48.2 7.2 61 35-97 164-229 (741)
210 3mbr_X Glutamine cyclotransfer 96.3 0.1 3.5E-06 37.5 11.4 98 5-105 121-232 (243)
211 3iuj_A Prolyl endopeptidase; h 96.2 0.056 1.9E-06 43.9 11.0 81 8-95 155-253 (693)
212 3nok_A Glutaminyl cyclase; bet 96.2 0.057 2E-06 39.5 9.9 97 5-104 152-262 (268)
213 2iwa_A Glutamine cyclotransfer 96.2 0.07 2.4E-06 38.9 10.5 88 7-95 125-226 (266)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 96.1 0.12 4.2E-06 36.6 11.4 82 8-96 153-246 (314)
215 2z2n_A Virginiamycin B lyase; 96.1 0.079 2.7E-06 37.2 10.2 58 35-93 100-158 (299)
216 2z2n_A Virginiamycin B lyase; 96.1 0.071 2.4E-06 37.4 10.0 59 35-94 58-117 (299)
217 1kb0_A Quinohemoprotein alcoho 96.0 0.043 1.5E-06 44.8 9.3 78 6-91 457-535 (677)
218 3sjl_D Methylamine dehydrogena 96.0 0.062 2.1E-06 41.3 9.6 71 9-86 312-384 (386)
219 2qe8_A Uncharacterized protein 95.8 0.17 5.9E-06 37.2 11.3 86 10-95 95-214 (343)
220 2hz6_A Endoplasmic reticulum t 95.7 0.0057 1.9E-07 46.1 3.0 60 2-70 15-74 (369)
221 3dr2_A Exported gluconolactona 95.7 0.13 4.5E-06 37.0 10.0 57 35-93 46-103 (305)
222 2qc5_A Streptogramin B lactona 95.5 0.21 7.2E-06 34.9 10.5 58 35-93 189-247 (300)
223 2qc5_A Streptogramin B lactona 95.5 0.18 6E-06 35.4 10.1 59 35-94 63-122 (300)
224 2ghs_A AGR_C_1268P; regucalcin 95.5 0.46 1.6E-05 34.6 13.0 60 35-94 180-248 (326)
225 3iuj_A Prolyl endopeptidase; h 95.4 0.013 4.6E-07 47.6 4.3 61 35-97 130-195 (693)
226 3dr2_A Exported gluconolactona 95.4 0.19 6.6E-06 36.1 10.2 65 22-92 79-147 (305)
227 2mad_H Methylamine dehydrogena 95.3 0.14 4.6E-06 38.7 9.3 56 10-71 300-357 (373)
228 1mda_H Methylamine dehydrogena 95.3 0.14 4.8E-06 38.8 9.3 67 12-85 298-366 (368)
229 3c75_H MADH, methylamine dehyd 95.1 0.26 9E-06 38.2 10.4 56 10-71 352-409 (426)
230 1kv9_A Type II quinohemoprotei 95.1 0.14 4.7E-06 41.7 9.1 83 5-95 437-521 (668)
231 3hxj_A Pyrrolo-quinoline quino 94.9 0.1 3.5E-06 37.4 7.2 78 3-92 154-231 (330)
232 1flg_A Protein (quinoprotein e 94.8 0.16 5.3E-06 40.8 8.6 83 5-95 465-549 (582)
233 3hrp_A Uncharacterized protein 94.8 0.17 5.7E-06 38.6 8.5 58 35-92 220-284 (409)
234 3hrp_A Uncharacterized protein 94.7 0.14 4.7E-06 39.0 7.9 59 35-95 132-190 (409)
235 3hxj_A Pyrrolo-quinoline quino 94.6 0.15 5.2E-06 36.4 7.6 82 2-93 113-194 (330)
236 2hz6_A Endoplasmic reticulum t 94.6 0.079 2.7E-06 39.7 6.2 78 2-89 136-217 (369)
237 2ece_A 462AA long hypothetical 94.2 0.43 1.5E-05 37.5 9.7 83 10-95 166-272 (462)
238 2ad6_A Methanol dehydrogenase 93.8 0.37 1.3E-05 38.4 8.9 81 5-93 443-524 (571)
239 1kb0_A Quinohemoprotein alcoho 93.6 0.17 6E-06 41.2 6.8 44 55-99 457-500 (677)
240 1yiq_A Quinohemoprotein alcoho 92.8 0.42 1.4E-05 39.0 7.9 47 55-102 455-501 (689)
241 2iwa_A Glutamine cyclotransfer 92.1 0.6 2.1E-05 33.9 7.2 79 5-93 85-168 (266)
242 2p4o_A Hypothetical protein; p 91.6 1.6 5.4E-05 31.3 9.1 58 35-94 33-90 (306)
243 1fwx_A Nitrous oxide reductase 91.6 0.83 2.8E-05 37.0 8.1 73 7-88 255-343 (595)
244 2xe4_A Oligopeptidase B; hydro 91.5 0.41 1.4E-05 39.4 6.3 59 35-96 175-241 (751)
245 1w6s_A Methanol dehydrogenase 91.4 1.1 3.6E-05 36.3 8.5 82 6-95 453-536 (599)
246 3nok_A Glutaminyl cyclase; bet 91.4 1.5 5E-05 32.0 8.5 79 4-95 73-153 (268)
247 2ece_A 462AA long hypothetical 91.1 0.89 3.1E-05 35.7 7.6 58 35-93 139-205 (462)
248 3nol_A Glutamine cyclotransfer 90.5 0.89 3E-05 33.0 6.7 78 5-93 106-188 (262)
249 3q7m_A Lipoprotein YFGL, BAMB; 90.2 2.3 7.9E-05 31.1 9.0 67 3-73 60-131 (376)
250 2p4o_A Hypothetical protein; p 90.1 3.9 0.00013 29.2 11.1 61 35-96 213-278 (306)
251 3q7m_A Lipoprotein YFGL, BAMB; 89.9 0.58 2E-05 34.4 5.5 67 4-78 285-351 (376)
252 2xe4_A Oligopeptidase B; hydro 89.7 0.98 3.3E-05 37.1 7.1 59 37-95 224-290 (751)
253 1fwx_A Nitrous oxide reductase 89.7 2.9 0.0001 33.9 9.6 78 13-96 117-215 (595)
254 3mbr_X Glutamine cyclotransfer 89.4 1.7 5.9E-05 31.1 7.4 78 5-93 84-166 (243)
255 3tc9_A Hypothetical hydrolase; 88.5 6.9 0.00023 29.8 11.6 59 35-93 227-287 (430)
256 1npe_A Nidogen, entactin; glyc 86.6 6.2 0.00021 27.3 11.4 58 35-92 80-139 (267)
257 1npe_A Nidogen, entactin; glyc 86.2 6.5 0.00022 27.2 12.0 59 35-93 37-96 (267)
258 3pbp_A Nucleoporin NUP82; beta 86.1 5.6 0.00019 31.1 8.9 54 35-88 126-192 (452)
259 1k3i_A Galactose oxidase precu 85.3 10 0.00034 30.4 10.5 82 9-95 220-306 (656)
260 2fp8_A Strictosidine synthase; 84.3 9.2 0.00031 27.3 11.8 60 35-95 186-248 (322)
261 4gq2_M Nucleoporin NUP120; bet 82.4 2.4 8.1E-05 36.1 5.8 37 35-71 237-273 (950)
262 1tl2_A L10, protein (tachylect 82.1 3.2 0.00011 29.6 5.6 56 35-92 42-104 (236)
263 3qqz_A Putative uncharacterize 81.6 7 0.00024 27.9 7.4 57 35-92 28-86 (255)
264 3sre_A PON1, serum paraoxonase 81.0 15 0.00053 27.5 10.6 59 35-94 222-285 (355)
265 2ad6_A Methanol dehydrogenase 79.7 21 0.00072 28.3 10.5 62 10-71 274-342 (571)
266 4hw6_A Hypothetical protein, I 78.1 19 0.00066 27.4 9.3 59 35-93 229-290 (433)
267 4a2l_A BT_4663, two-component 77.9 27 0.00091 28.5 10.7 59 35-93 407-469 (795)
268 3das_A Putative oxidoreductase 77.3 20 0.00069 26.8 9.5 58 35-92 33-100 (347)
269 4hw6_A Hypothetical protein, I 76.9 12 0.00041 28.5 7.9 58 35-93 140-199 (433)
270 3zwu_A Alkaline phosphatase PH 76.2 15 0.00052 29.7 8.5 58 36-93 478-548 (592)
271 4fhn_B Nucleoporin NUP120; pro 75.9 2.8 9.6E-05 36.2 4.4 37 35-71 239-275 (1139)
272 2p9w_A MAL S 1 allergenic prot 75.3 23 0.00079 26.5 9.3 60 35-95 138-204 (334)
273 1kv9_A Type II quinohemoprotei 75.3 31 0.001 27.8 10.2 66 5-72 177-287 (668)
274 1w6s_A Methanol dehydrogenase 74.5 32 0.0011 27.6 10.7 62 9-71 279-349 (599)
275 1cru_A Protein (soluble quinop 73.8 28 0.00097 26.7 9.8 59 35-93 28-98 (454)
276 3tc9_A Hypothetical hydrolase; 73.7 11 0.00038 28.6 6.9 59 35-94 138-197 (430)
277 4a9v_A PHOX; hydrolase, beta-p 73.4 26 0.00088 28.4 9.0 59 35-93 477-548 (592)
278 3kya_A Putative phosphatase; s 73.0 12 0.00042 29.5 7.1 60 35-94 248-328 (496)
279 3v65_B Low-density lipoprotein 72.1 28 0.00094 25.9 10.3 59 35-93 160-219 (386)
280 2fp8_A Strictosidine synthase; 71.8 24 0.00082 25.0 8.5 58 35-93 127-202 (322)
281 2ism_A Putative oxidoreductase 70.5 29 0.00099 25.4 9.2 56 35-93 32-96 (352)
282 1k3i_A Galactose oxidase precu 70.4 11 0.00037 30.2 6.4 59 38-96 190-263 (656)
283 3qqz_A Putative uncharacterize 70.3 26 0.0009 24.9 10.8 90 9-104 50-149 (255)
284 3v64_C Agrin; beta propeller, 69.9 29 0.001 25.3 11.5 57 35-91 117-174 (349)
285 3v64_C Agrin; beta propeller, 69.8 30 0.001 25.3 11.5 59 35-93 160-220 (349)
286 3a9g_A Putative uncharacterize 69.5 31 0.0011 25.4 8.6 57 35-93 30-94 (354)
287 4a2l_A BT_4663, two-component 68.2 47 0.0016 27.0 10.2 57 35-93 453-515 (795)
288 1tl2_A L10, protein (tachylect 68.0 14 0.00047 26.4 5.7 58 37-97 91-155 (236)
289 3v65_B Low-density lipoprotein 67.5 35 0.0012 25.3 11.0 59 35-93 203-263 (386)
290 3sre_A PON1, serum paraoxonase 67.4 36 0.0012 25.4 10.4 60 35-95 166-240 (355)
291 3f7f_A Nucleoporin NUP120; nuc 62.8 12 0.00042 31.0 5.3 35 35-71 223-257 (729)
292 1ijq_A LDL receptor, low-densi 62.4 40 0.0014 24.1 10.8 57 35-91 78-135 (316)
293 2g8s_A Glucose/sorbosone dehyd 61.8 44 0.0015 24.5 8.5 56 35-92 19-86 (353)
294 2p9w_A MAL S 1 allergenic prot 61.7 48 0.0016 24.8 9.0 62 35-96 64-157 (334)
295 3kya_A Putative phosphatase; s 61.6 40 0.0014 26.5 7.9 61 36-96 141-213 (496)
296 3p5b_L Low density lipoprotein 59.3 53 0.0018 24.5 11.0 57 35-91 160-217 (400)
297 1n7d_A LDL receptor, low-densi 57.6 18 0.00062 29.5 5.5 57 35-91 497-555 (699)
298 3v9f_A Two-component system se 56.5 59 0.002 26.3 8.4 57 35-93 451-512 (781)
299 1ijq_A LDL receptor, low-densi 56.1 52 0.0018 23.5 12.6 58 35-93 121-181 (316)
300 3p5b_L Low density lipoprotein 55.9 61 0.0021 24.2 12.5 59 35-93 203-263 (400)
301 1flg_A Protein (quinoprotein e 54.5 68 0.0023 25.4 8.2 63 10-72 293-363 (582)
302 3m0c_C LDL receptor, low-densi 50.1 1.1E+02 0.0038 25.4 12.0 59 35-93 515-575 (791)
303 2xzh_A Clathrin heavy chain 1; 47.2 91 0.0031 23.6 8.6 49 35-83 261-309 (365)
304 2ism_A Putative oxidoreductase 46.2 68 0.0023 23.4 6.7 60 35-95 269-334 (352)
305 3m0c_C LDL receptor, low-densi 45.9 1.3E+02 0.0044 25.0 10.6 57 35-91 472-529 (791)
306 2be1_A Serine/threonine-protei 45.6 21 0.00072 26.6 3.8 61 1-68 15-80 (339)
307 3sov_A LRP-6, low-density lipo 42.8 91 0.0031 22.4 11.4 59 35-93 123-183 (318)
308 4a0p_A LRP6, LRP-6, low-densit 38.2 1.5E+02 0.0053 23.7 10.3 58 35-92 81-140 (628)
309 1bpo_A Protein (clathrin); cla 37.5 1.5E+02 0.0052 23.4 9.3 49 35-83 260-308 (494)
310 3sov_A LRP-6, low-density lipo 37.0 1.1E+02 0.0039 21.9 11.0 57 35-91 80-137 (318)
311 2vpj_A Kelch-like protein 12; 35.5 1.1E+02 0.0037 21.1 8.0 53 44-96 206-263 (301)
312 3v9f_A Two-component system se 34.9 1.8E+02 0.0061 23.5 11.2 56 35-92 496-555 (781)
313 4asc_A Kelch repeat and BTB do 34.4 1.2E+02 0.004 21.2 7.4 51 44-96 196-253 (315)
314 4a0p_A LRP6, LRP-6, low-densit 34.0 1.8E+02 0.0062 23.3 10.8 58 35-93 390-450 (628)
315 3s94_A LRP-6, low-density lipo 33.0 1.9E+02 0.0064 23.1 10.2 58 35-92 393-452 (619)
316 2wg3_C Hedgehog-interacting pr 32.1 1.7E+02 0.0059 22.5 7.8 57 35-92 15-89 (463)
317 1n7d_A LDL receptor, low-densi 32.1 38 0.0013 27.5 3.6 56 36-91 455-512 (699)
318 3amr_A 3-phytase; beta-propell 32.0 1.6E+02 0.0055 22.1 9.6 61 35-96 129-200 (355)
319 3sbq_A Nitrous-oxide reductase 29.3 2.4E+02 0.0081 23.1 9.1 56 35-91 324-393 (638)
320 2xbg_A YCF48-like protein; pho 27.9 1.6E+02 0.0056 20.9 8.3 59 35-94 206-268 (327)
321 3ei3_A DNA damage-binding prot 27.4 3.1E+02 0.011 23.9 9.8 84 1-84 97-188 (1158)
322 3ii7_A Kelch-like protein 7; p 26.4 1.6E+02 0.0055 20.3 8.2 23 44-66 101-129 (306)
323 2g8s_A Glucose/sorbosone dehyd 25.8 1.9E+02 0.0065 20.9 7.7 59 35-93 272-340 (353)
324 3amr_A 3-phytase; beta-propell 24.2 2.3E+02 0.0078 21.2 10.5 60 35-94 181-250 (355)
325 1cru_A Protein (soluble quinop 24.1 2.4E+02 0.0082 21.4 8.5 19 35-53 145-163 (454)
326 4a9v_A PHOX; hydrolase, beta-p 23.9 1.6E+02 0.0055 23.9 5.7 39 9-51 510-548 (592)
327 3s94_A LRP-6, low-density lipo 23.6 2.8E+02 0.0096 22.1 10.5 58 35-92 85-144 (619)
328 3a9g_A Putative uncharacterize 23.0 2.2E+02 0.0076 20.7 7.9 60 35-94 260-330 (354)
329 2xbg_A YCF48-like protein; pho 22.2 2.1E+02 0.0073 20.2 11.3 57 35-93 164-222 (327)
330 4gz8_A Semaphorin-3A; multi-do 21.9 3E+02 0.01 22.6 7.0 27 33-59 469-495 (667)
331 2xn4_A Kelch-like protein 2; s 21.9 2E+02 0.0068 19.7 9.0 23 44-66 204-231 (302)
332 1q47_A Semaphorin 3A; beta pro 21.4 1.5E+02 0.005 23.3 5.0 25 35-59 463-487 (495)
333 1zgk_A Kelch-like ECH-associat 21.2 2.1E+02 0.0072 19.8 7.5 23 44-66 215-242 (308)
334 3kvp_A Uncharacterized protein 21.1 82 0.0028 17.9 2.5 17 5-21 37-53 (72)
No 1
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=136.76 Aligned_cols=127 Identities=51% Similarity=0.964 Sum_probs=106.0
Q ss_pred CceeceEEEEEeeCCCC-cceeEEEeeeC-------CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc
Q 041215 2 GSIEGRVGVHHLDDSQQ-SKNFTFKCHRD-------GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR 73 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~-~~~~~l~~h~~-------~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 73 (136)
|+.||.+.+|.++.... .....+.+|.. ..+.+.|.+++|+|++.+|++++.|+.|++||+.++..+..+..
T Consensus 234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 67789998855544332 56777777764 11122599999999999999999999999999999999999999
Q ss_pred CCCceeEEEEccCCCEEEEEEcccccccccccCCCCCcceEEEEcCCcccccccCCC
Q 041215 74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRA 130 (136)
Q Consensus 74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (136)
|..+|.+++|+|++.+|++++.|+|.+......++ ++..+.++++.+ +++||+||
T Consensus 314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~-~~~~i~~~~~~~-~~~p~~~~ 368 (368)
T 3mmy_A 314 LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKNYIFLRNAAE-ELKPRNKK 368 (368)
T ss_dssp CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT-SCCEEEEECCTT-TTSBC---
T ss_pred CCCCceEEEECCCCCeEEEEecccccccccccCCC-ccceeeehhcCc-ccCcccCC
Confidence 99999999999999999999999999999888777 788999999987 99999987
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.62 E-value=2.9e-15 Score=111.70 Aligned_cols=95 Identities=22% Similarity=0.280 Sum_probs=86.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||.++++....+.+|.. +|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.++
T Consensus 182 g~~dg~i~i--wd~~~~~~~~~~~~h~~-----~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 254 (321)
T 3ow8_A 182 GAIDGIINI--FDIATGKLLHTLEGHAM-----PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254 (321)
T ss_dssp EETTSCEEE--EETTTTEEEEEECCCSS-----CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EcCCCeEEE--EECCCCcEEEEEcccCC-----ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEE
Confidence 677899887 88888999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
+|+|++.+|++++.|...+..+
T Consensus 255 ~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 255 AFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEE
T ss_pred EECCCCCEEEEEeCCCcEEEEe
Confidence 9999999999998887554433
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.62 E-value=4.1e-15 Score=110.92 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=84.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+|+.||+|.+ ||.+.+.....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++.++.++.+|.+.|.+
T Consensus 223 s~s~dg~i~i--wd~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~ 295 (321)
T 3ow8_A 223 TASDDGYIKI--YDVQHANLAGTLSGHAS-----WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG 295 (321)
T ss_dssp EECTTSCEEE--EETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEcCCCeEEE--EECCCcceeEEEcCCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEE
Confidence 3678999988 77788888899999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEccccc
Q 041215 81 STFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~ 99 (136)
++|+|++.+|++++.|...
T Consensus 296 v~~s~~g~~l~s~~~d~~i 314 (321)
T 3ow8_A 296 VKYNGNGSKIVSVGDDQEI 314 (321)
T ss_dssp EEECTTSSEEEEEETTCCE
T ss_pred EEECCCCCEEEEEeCCCeE
Confidence 9999999999998887654
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.61 E-value=7e-15 Score=111.09 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=79.5
Q ss_pred CCceeceEEEEEeeCCCCccee----EEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNF----TFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ 76 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~----~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 76 (136)
+|+.||+|++ ||..+++... .+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++.++..+.+|.+
T Consensus 98 ~~s~dg~v~l--Wd~~~~~~~~~~~~~~~~H~~-----~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 98 VASDSGAVEL--WELDENETLIVSKFCKYEHDD-----IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp EEETTSEEEE--EEECTTSSCEEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EEECCCEEEE--EeccCCCceeEeeccccCCCC-----CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 3678999998 5555555443 3457888 999999999999999999999999999999999999999999
Q ss_pred ceeEEEEccCCC-EEEEEEcccccccc
Q 041215 77 PIPCSTFNTDGS-IFAYSVCYDWSKGA 102 (136)
Q Consensus 77 ~v~~v~~sp~~~-~l~s~~~dd~~~~~ 102 (136)
.|.+++|++++. ++++++.|...+..
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLW 197 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred ceEEEEecCCCCCceeeeccccccccc
Confidence 999999999985 77888777654433
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.61 E-value=5.6e-15 Score=108.93 Aligned_cols=93 Identities=10% Similarity=0.025 Sum_probs=85.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||+|++ ||..++.....+..|.. +|.+++|+|++++|++++.|+.|++||+.++..+..+.+|.+.|.++
T Consensus 31 ~~~dg~v~l--Wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 103 (304)
T 2ynn_A 31 TLYSGRVEL--WNYETQVEVRSIQVTET-----PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (304)
T ss_dssp EETTSEEEE--EETTTTEEEEEEECCSS-----CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EcCCCcEEE--EECCCCceeEEeeccCC-----cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 678999988 77788888999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKG 101 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~ 101 (136)
+|+|++.++++|+.|...+.
T Consensus 104 ~~~~~~~~l~sgs~D~~v~l 123 (304)
T 2ynn_A 104 AVHPTKPYVLSGSDDLTVKL 123 (304)
T ss_dssp EECSSSSEEEEEETTSCEEE
T ss_pred EEcCCCCEEEEECCCCeEEE
Confidence 99999999999988775443
No 6
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.60 E-value=1.1e-14 Score=109.86 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=81.5
Q ss_pred CceeceEEEEEeeCCCCc---------------c-eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc-EEEEeCCC
Q 041215 2 GSIEGRVGVHHLDDSQQS---------------K-NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA-FNFWDKDS 64 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~---------------~-~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~-v~vwd~~~ 64 (136)
|+.||.|.+ ||..++. + ...+.+|.. .|.+++|+|++.+|++++.|+. |++||+.+
T Consensus 155 g~~~g~v~i--wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-----~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 155 EFNLGQIHI--TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-----PIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp SSCTTCEEE--EECCC------------------CCEEECCCSS-----CEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred CCcCcEEEE--EECCCCCccccccccccccccCcccEEEEccCC-----ceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 678999988 5655443 2 678889999 9999999999999999999998 99999999
Q ss_pred cceeeecc-c-CCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215 65 KQRLKAMS-R-CGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 65 ~~~~~~~~-~-h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
+..+.++. + |...|.+++|+|++.+|++++.|........
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 99999997 5 9999999999999999999988865544433
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.60 E-value=6.7e-15 Score=110.09 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=86.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||+|.+ ||..++.....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|+++
T Consensus 160 ~s~d~~i~~--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v 232 (340)
T 1got_B 160 SSGDTTCAL--WDIETGQQTTTFTGHTG-----DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232 (340)
T ss_dssp EETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred EECCCcEEE--EECCCCcEEEEEcCCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEE
Confidence 567899887 78888899999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
+|+|++.+|++|+.|...+..+
T Consensus 233 ~~~p~~~~l~s~s~d~~v~iwd 254 (340)
T 1got_B 233 CFFPNGNAFATGSDDATCRLFD 254 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEcCCCcEEEEE
Confidence 9999999999998887554443
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.60 E-value=1.2e-14 Score=107.19 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=83.6
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCcee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIP 79 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~ 79 (136)
+|+.||+|++ ||..+++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++ .....+.+|...|.
T Consensus 72 s~s~d~~i~v--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~ 144 (304)
T 2ynn_A 72 VGSDDFRIRV--FNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (304)
T ss_dssp EEETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEE
T ss_pred EECCCCEEEE--EECCCCcEEEEEeCCCC-----cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEE
Confidence 3678999988 77788899999999999 9999999999999999999999999999876 44567889999999
Q ss_pred EEEEcc-CCCEEEEEEccccccccc
Q 041215 80 CSTFNT-DGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 80 ~v~~sp-~~~~l~s~~~dd~~~~~~ 103 (136)
+++|+| ++.++++|+.|...+..+
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd 169 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWS 169 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEE
Confidence 999999 678999998887554443
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.59 E-value=5.2e-15 Score=113.61 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=84.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||+|.+ ||.+++....++.+|.. .|.+++|+|++.+|++++.|+.|++||+.++.++..+.+|...|.++
T Consensus 314 gs~D~~i~i--wd~~~~~~~~~~~~h~~-----~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 314 GSRDKTIKM--WDVSTGMCLMTLVGHDN-----WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386 (410)
T ss_dssp EETTSEEEE--EETTTTEEEEEEECCSS-----CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred EeCCCeEEE--EECCCCceEEEEECCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 677899888 88888999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccc
Q 041215 82 TFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~ 99 (136)
+|+|++.+|++|+.|...
T Consensus 387 ~~~~~~~~l~sgs~D~~i 404 (410)
T 1vyh_C 387 DFHKTAPYVVTGSVDQTV 404 (410)
T ss_dssp EECSSSSCEEEEETTSEE
T ss_pred EEcCCCCEEEEEeCCCcE
Confidence 999999999999887654
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.59 E-value=7.4e-15 Score=110.98 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=81.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
|+.||.|.+ ||.++++...++..|.. .|.+++|+|++ .+|++++.|+.|++||+.+++++..+ +|.+.|++
T Consensus 245 g~~d~~i~~--wd~~~~~~~~~~~~~~~-----~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~ 316 (357)
T 4g56_B 245 GDETGNVSL--VNIKNPDSAQTSAVHSQ-----NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTG 316 (357)
T ss_dssp EESSSCEEE--EESSCGGGCEEECCCSS-----CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEE
T ss_pred eecccceeE--EECCCCcEeEEEeccce-----eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEE
Confidence 577888887 78888999999999999 99999999998 68999999999999999998877655 89999999
Q ss_pred EEEcc-CCCEEEEEEcccccccc
Q 041215 81 STFNT-DGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 81 v~~sp-~~~~l~s~~~dd~~~~~ 102 (136)
|+|+| ++.+|++++.|......
T Consensus 317 vafsP~d~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 317 VAWSPLDHSKFTTVGWDHKVLHH 339 (357)
T ss_dssp EEECSSSTTEEEEEETTSCEEEE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEE
Confidence 99998 78999999887755433
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.59 E-value=6e-15 Score=111.46 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=76.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
|+.||+|++ ||.++++.+.++.+|.. .|.+++|+|++ .+|++++.|+.|++||+.++++ ..+.+|.+.|++
T Consensus 233 g~~dg~v~~--wd~~~~~~~~~~~~h~~-----~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~ 304 (344)
T 4gqb_B 233 GDENGTVSL--VDTKSTSCVLSSAVHSQ-----CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRD 304 (344)
T ss_dssp EETTSEEEE--EESCC--CCEEEECCSS-----CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEE
T ss_pred eccCCcEEE--EECCCCcEEEEEcCCCC-----CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEE
Confidence 677899988 78899999999999999 99999999998 6899999999999999998875 456799999999
Q ss_pred EEEccCCC-EEEEEEccccc
Q 041215 81 STFNTDGS-IFAYSVCYDWS 99 (136)
Q Consensus 81 v~~sp~~~-~l~s~~~dd~~ 99 (136)
|+|+|++. +|++++.|...
T Consensus 305 v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp EEECSSSTTEEEEEETTSCE
T ss_pred EEEeCCCCeEEEEEcCCCeE
Confidence 99999986 56666655544
No 12
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.59 E-value=1.1e-14 Score=110.43 Aligned_cols=89 Identities=9% Similarity=0.003 Sum_probs=74.0
Q ss_pred EEEEeeCCCCc----ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-ccCCCceeEEEE
Q 041215 9 GVHHLDDSQQS----KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPIPCSTF 83 (136)
Q Consensus 9 ~i~~~d~~~~~----~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~ 83 (136)
.++.|+..... ....+..|.. .|.+++|+|+|.+|++|+.|+.|++||+.+++++..+ .+|..+|++|+|
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~-----~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNRFK-----GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCS-----CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred EEeecccccceecceeeeeecCCCC-----CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence 44556654332 2345667778 9999999999999999999999999999999988874 789999999999
Q ss_pred ccCCCEEEEEEcccccccc
Q 041215 84 NTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 84 sp~~~~l~s~~~dd~~~~~ 102 (136)
+|++++|++|+.|...+..
T Consensus 321 Spdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHII 339 (365)
T ss_dssp CTTSCEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEE
Confidence 9999999999988866443
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.59 E-value=7.5e-15 Score=112.71 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=85.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
||.||+|.+ ||..++....++.+|.. .|.+++|+|++.+|++++.|+.|++||+.++.++..+.+|...|.++
T Consensus 126 ~s~Dg~i~v--wd~~~~~~~~~l~~h~~-----~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v 198 (410)
T 1vyh_C 126 ASEDATIKV--WDYETGDFERTLKGHTD-----SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 198 (410)
T ss_dssp EESSSCEEE--EETTTCCCCEEECCCSS-----CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE
T ss_pred EeCCCeEEE--EECCCCcEEEEEeccCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEE
Confidence 678999988 77788888999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEcccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~~ 102 (136)
+|+|++.++++|+.|...+..
T Consensus 199 ~~~p~~~~l~s~s~D~~i~~w 219 (410)
T 1vyh_C 199 SIMPNGDHIVSASRDKTIKMW 219 (410)
T ss_dssp EECSSSSEEEEEETTSEEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEE
Confidence 999999999999887754433
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.58 E-value=1.5e-14 Score=108.12 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=81.6
Q ss_pred CceeceEEEEEeeCC-----CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215 2 GSIEGRVGVHHLDDS-----QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ 76 (136)
Q Consensus 2 gs~dG~v~i~~~d~~-----~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 76 (136)
||.||+|++|.+... .+.+...+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|..
T Consensus 45 gs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-----~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~ 119 (343)
T 2xzm_R 45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-----FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS 119 (343)
T ss_dssp EETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-----CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS
T ss_pred EcCCCEEEEEECCcCCcccccccccchhccCCC-----ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence 678999999665432 2345667888999 999999999999999999999999999999999999999999
Q ss_pred ceeEEEEccCCCEEEEEEcccccc
Q 041215 77 PIPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
.|.+++|+|++.++++++.|...+
T Consensus 120 ~v~~v~~sp~~~~l~s~~~d~~i~ 143 (343)
T 2xzm_R 120 EVYSVAFSPDNRQILSAGAEREIK 143 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSCEE
T ss_pred cEEEEEECCCCCEEEEEcCCCEEE
Confidence 999999999999999998876443
No 15
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.58 E-value=3e-14 Score=104.87 Aligned_cols=117 Identities=30% Similarity=0.534 Sum_probs=97.2
Q ss_pred CCceeceEEEEEeeCC--C--CcceeEEEeeeC----CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc
Q 041215 1 VGSIEGRVGVHHLDDS--Q--QSKNFTFKCHRD----GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~--~--~~~~~~l~~h~~----~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 72 (136)
+|+.||.+.+|.++.. . ......+.+|.. ..+...|.+++|+|++.+|++++.||.|++||+.++..+..+.
T Consensus 211 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 3677999999777554 1 367778887742 1223389999999999999999999999999999999999999
Q ss_pred cC-CCceeEEEEccCCCEEEEEEcccc-cccccc--cCCCCCcceEEEEc-CC
Q 041215 73 RC-GQPIPCSTFNTDGSIFAYSVCYDW-SKGAEN--HNPATAKTYIYLHL-PQ 120 (136)
Q Consensus 73 ~h-~~~v~~v~~sp~~~~l~s~~~dd~-~~~~~~--~~~~~~~~~~~~~~-~~ 120 (136)
.| ..+|.+++ |++.+|++++.|++ .++... ..|+ ++..+.+++ +.
T Consensus 291 ~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~~~~~~~-~~~~i~~~~~~~ 340 (342)
T 1yfq_A 291 KFNEDSVVKIA--CSDNILCLATSDDTFKTNAAIDQTIEL-NASSIYIIFDYE 340 (342)
T ss_dssp CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSSCTTSCC-CCCEEEEEETCS
T ss_pred cccCCCceEec--CCCCeEEEEecCCcccccccccccCCC-CCceEEEecccc
Confidence 98 99999999 99999999999999 888886 5566 778888888 64
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.57 E-value=1.9e-14 Score=106.88 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=83.6
Q ss_pred CceeceEEEEEeeCC---CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 2 GSIEGRVGVHHLDDS---QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~---~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
||.||+|.+|.++.. .+.+...+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|
T Consensus 36 ~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v 110 (319)
T 3frx_A 36 ASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-----IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110 (319)
T ss_dssp EETTSEEEEEEEEEETTEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred ecCCccEEEecCCCCCccccccceEEeCCcc-----cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcE
Confidence 688999999766432 2345678899999 99999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEEccccccc
Q 041215 79 PCSTFNTDGSIFAYSVCYDWSKG 101 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~~~~ 101 (136)
.+++|+|++.++++|+.|...+.
T Consensus 111 ~~~~~~~~~~~l~s~s~D~~i~v 133 (319)
T 3frx_A 111 MSVDIDKKASMIISGSRDKTIKV 133 (319)
T ss_dssp EEEEECTTSCEEEEEETTSCEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEE
Confidence 99999999999999988875443
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.56 E-value=4.3e-14 Score=106.54 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=85.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
||.||+|.+ ||..+++....+.+|.. .|.+++|+|+ +.+|++++.|+.|++||+.++.++..+..|...|+
T Consensus 172 ~s~D~~v~l--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~ 244 (354)
T 2pbi_B 172 ASGDGTCAL--WDVESGQLLQSFHGHGA-----DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN 244 (354)
T ss_dssp EETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EeCCCcEEE--EeCCCCeEEEEEcCCCC-----CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE
Confidence 677899988 78888999999999999 9999999874 68999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEEccccccccc
Q 041215 80 CSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
+++|+|++.++++|+.|...+..+
T Consensus 245 ~v~~~p~~~~l~s~s~D~~v~lwd 268 (354)
T 2pbi_B 245 SVRYYPSGDAFASGSDDATCRLYD 268 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999887654443
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.54 E-value=9.7e-14 Score=101.85 Aligned_cols=93 Identities=24% Similarity=0.333 Sum_probs=84.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||..+++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+..|..+|.++
T Consensus 83 ~~~d~~i~v--wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 83 ASDDKTLKI--WDVSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp EETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred ECCCCEEEE--EECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence 577899988 77788888999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKG 101 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~ 101 (136)
+|+|++.++++++.|.....
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~ 175 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRI 175 (312)
T ss_dssp EECTTSSEEEEEETTSCEEE
T ss_pred EEcCCCCEEEEEeCCCcEEE
Confidence 99999999999988775443
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.53 E-value=9.6e-14 Score=101.87 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=84.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.+.+ |+..+++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.++
T Consensus 41 ~~~dg~i~i--w~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 113 (312)
T 4ery_A 41 SSADKLIKI--WGAYDGKFEKTISGHKL-----GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 113 (312)
T ss_dssp EETTSCEEE--EETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred eeCCCeEEE--EeCCCcccchhhccCCC-----ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 677899988 67777888888889999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEcccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~~ 102 (136)
+|+|++.++++++.|......
T Consensus 114 ~~~~~~~~l~s~~~d~~i~iw 134 (312)
T 4ery_A 114 NFNPQSNLIVSGSFDESVRIW 134 (312)
T ss_dssp EECSSSSEEEEEETTSCEEEE
T ss_pred EEcCCCCEEEEEeCCCcEEEE
Confidence 999999999999887754433
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.53 E-value=5.8e-14 Score=112.74 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=83.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc-------cC
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS-------RC 74 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------~h 74 (136)
||.|++|.+ ||..+++...++.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+. +|
T Consensus 166 ~s~D~~v~l--wd~~~~~~~~~l~~H~~-----~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 166 GSDDNTVAI--FEGPPFKFKSTFGEHTK-----FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp EETTSCEEE--EETTTBEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred EeCCCeEEE--EECCCCeEeeeeccccC-----ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc
Confidence 678999988 67777888889999999 99999999999999999999999999999988887774 79
Q ss_pred CCceeEEEEccCCCEEEEEEcccccccc
Q 041215 75 GQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
.+.|.+++|+|++.+|++++.|...+..
T Consensus 239 ~~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999999888755433
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.52 E-value=9.2e-14 Score=109.31 Aligned_cols=88 Identities=22% Similarity=0.299 Sum_probs=79.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||+|++ ||. +++...+|.+|.. .|.+++|+|++++|++++.|+.|++||. ++..+..+.+|...|.++
T Consensus 34 ~~~d~~v~i--Wd~-~~~~~~~l~gh~~-----~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~ 104 (577)
T 2ymu_A 34 ASDDKTVKL--WNR-NGQLLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV 104 (577)
T ss_dssp EETTSEEEE--ECT-TSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEE
T ss_pred EeCCCEEEE--EEC-CCCEEEEEeCCCC-----CEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEE
Confidence 677899988 664 6778899999999 9999999999999999999999999995 567888999999999999
Q ss_pred EEccCCCEEEEEEcccc
Q 041215 82 TFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~ 98 (136)
+|+|++.++++++.|..
T Consensus 105 ~~s~d~~~l~~~~~d~~ 121 (577)
T 2ymu_A 105 AFSPDGQTIASASDDKT 121 (577)
T ss_dssp EECTTSSEEEEEETTSC
T ss_pred EECCCCCEEEEEcCCCc
Confidence 99999999999887654
No 22
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.52 E-value=4.6e-14 Score=106.92 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=83.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||..++.....+..|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.++
T Consensus 115 ~~~dg~i~i--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 187 (420)
T 3vl1_A 115 GTTEGDIKV--LDSNFNLQREIDQAHVS-----EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 187 (420)
T ss_dssp EETTSCEEE--ECTTSCEEEEETTSSSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEE
T ss_pred EECCCCEEE--EeCCCcceeeecccccC-----ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEE
Confidence 677899988 77787888877788999 99999999999999999999999999999999899999999999999
Q ss_pred EEccCCCEEEEEEccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKG 101 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~ 101 (136)
+|+|++.+|++++.|.....
T Consensus 188 ~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 188 AIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp EEETTTTEEEEEETTSCEEE
T ss_pred EEcCCCCEEEEEcCCCcEEE
Confidence 99999999999988775443
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.51 E-value=2e-13 Score=102.37 Aligned_cols=96 Identities=11% Similarity=0.158 Sum_probs=76.5
Q ss_pred CceeceEEEEEeeCCCCcceeE-EEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc--ceeeecccCCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFT-FKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK--QRLKAMSRCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~-l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~h~~~v 78 (136)
|+.||+|++|..+......... ..+|.. .|.+++|+|++.+|++++.|+.+++|+...+ .++..+.+|...|
T Consensus 34 ~~~D~~i~iw~~~~~~~~~~~~~~~~h~~-----~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v 108 (345)
T 3fm0_A 34 CGGDRRIRIWGTEGDSWICKSVLSEGHQR-----TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEV 108 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECSSCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCE
T ss_pred EcCCCeEEEEEcCCCcceeeeeeccccCC-----cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCc
Confidence 6789999995553322112222 246888 9999999999999999999999999998765 4567888999999
Q ss_pred eEEEEccCCCEEEEEEcccccccc
Q 041215 79 PCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
.+++|+|++.+|++|+.|......
T Consensus 109 ~~v~~sp~~~~l~s~s~D~~v~iw 132 (345)
T 3fm0_A 109 KSVAWAPSGNLLATCSRDKSVWVW 132 (345)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEEEEeCCCCEEEEEECCCeEEEE
Confidence 999999999999999888754433
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.51 E-value=8e-14 Score=109.66 Aligned_cols=88 Identities=22% Similarity=0.311 Sum_probs=78.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ || .+++....+.+|.. .|.+++|+|++++|++++.|+.|++||. +++.+..+.+|.+.|.++
T Consensus 485 ~~~d~~i~i--w~-~~~~~~~~~~~h~~-----~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 485 ASDDKTVKL--WN-RNGQLLQTLTGHSS-----SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV 555 (577)
T ss_dssp EETTSEEEE--EE-TTSCEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEE
T ss_pred EeCCCEEEE--Ec-CCCCEEEEEeCCCC-----CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEE
Confidence 567888888 55 35678888999999 9999999999999999999999999995 678889999999999999
Q ss_pred EEccCCCEEEEEEcccc
Q 041215 82 TFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~ 98 (136)
+|+|++++|++++.|..
T Consensus 556 ~fs~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 556 AFSPDGQTIASASSDKT 572 (577)
T ss_dssp EECTTSSCEEEEETTSC
T ss_pred EEcCCCCEEEEEeCCCE
Confidence 99999999999887653
No 25
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.51 E-value=2e-13 Score=100.89 Aligned_cols=92 Identities=13% Similarity=0.235 Sum_probs=82.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeec---ccCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAM---SRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~h~~~ 77 (136)
|+.||.|.+ ||..+++....+.+|.. .|.+++|+| ++.+|++++.|+.|++||+.++..+..+ ..|...
T Consensus 91 ~~~dg~i~v--~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 91 AGSRGIIRI--INPITMQCIKHYVGHGN-----AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp EETTCEEEE--ECTTTCCEEEEEESCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred ecCCCEEEE--EEchhceEeeeecCCCC-----cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence 677888887 78888889999999999 999999999 8899999999999999999998888777 689999
Q ss_pred eeEEEEccCCCEEEEEEcccccc
Q 041215 78 IPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
|.+++|+|++.++++++.|....
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~ 186 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLK 186 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEE
T ss_pred eeEEEECCCCCEEEEecCCCCEE
Confidence 99999999999999998876443
No 26
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.4e-13 Score=102.74 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=76.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee-eeccc-CCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL-KAMSR-CGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~-h~~~v 78 (136)
|+.||+|.+ ||.++++....+. .+.. .+.+++|+|++.+|++|+.|+.|++||+.++..+ ..+.. |.++|
T Consensus 145 ~s~dg~i~~--wd~~~~~~~~~~~~~~~~-----~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v 217 (343)
T 3lrv_A 145 ADNRGTIGF--QSYEDDSQYIVHSAKSDV-----EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI 217 (343)
T ss_dssp EETTCCEEE--EESSSSCEEEEECCCSSC-----CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCE
T ss_pred EeCCCcEEE--EECCCCcEEEEEecCCCC-----ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCE
Confidence 678999988 7777777755553 3455 7999999999999999999999999999998877 77887 99999
Q ss_pred eEEEEccCCCEEEEEEcccc
Q 041215 79 PCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~ 98 (136)
++++|+|++.+|++++ ++.
T Consensus 218 ~~l~fs~~g~~l~s~~-~~~ 236 (343)
T 3lrv_A 218 KEVKFADNGYWMVVEC-DQT 236 (343)
T ss_dssp EEEEECTTSSEEEEEE-SSB
T ss_pred EEEEEeCCCCEEEEEe-CCe
Confidence 9999999999999988 553
No 27
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.51 E-value=1.3e-13 Score=101.22 Aligned_cols=98 Identities=10% Similarity=0.180 Sum_probs=80.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcc--eeeecccCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQ--RLKAMSRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~ 77 (136)
|+.||+|++|.++....+...++.+|.. +|.+++|++. +.+|++++.|+.|++||+.++. .+..+..|...
T Consensus 27 ~s~D~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~ 101 (297)
T 2pm7_B 27 CSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS 101 (297)
T ss_dssp EETTSCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC
T ss_pred EeCCCEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc
Confidence 6789999995554445577889999999 9999999763 7999999999999999998763 45667789999
Q ss_pred eeEEEEccC--CCEEEEEEcccccccccc
Q 041215 78 IPCSTFNTD--GSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 78 v~~v~~sp~--~~~l~s~~~dd~~~~~~~ 104 (136)
|.+++|+|+ +.+|++++.|......+.
T Consensus 102 v~~v~~~p~~~g~~l~s~s~d~~v~~wd~ 130 (297)
T 2pm7_B 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEF 130 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEEB
T ss_pred eeEEEeCcCCCCcEEEEEECCCcEEEEEe
Confidence 999999997 889999988875544443
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.50 E-value=1e-13 Score=103.99 Aligned_cols=94 Identities=16% Similarity=0.261 Sum_probs=79.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc---ceeeecccCCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK---QRLKAMSRCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~h~~~v 78 (136)
|+.||++.+|..+.........+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++ .++..+..|...|
T Consensus 79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 79 ASFDATTCIWKKNQDDFECVTTLEGHEN-----EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153 (345)
T ss_dssp EETTSCEEEEEECCC-EEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred EECCCcEEEEEccCCCeEEEEEccCCCC-----CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence 6789999996554444456778889999 9999999999999999999999999999765 3456778899999
Q ss_pred eEEEEccCCCEEEEEEcccccc
Q 041215 79 PCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
.+++|+|++.+|++|+.|...+
T Consensus 154 ~~~~~~p~~~~l~s~s~d~~i~ 175 (345)
T 3fm0_A 154 KHVVWHPSQELLASASYDDTVK 175 (345)
T ss_dssp EEEEECSSSSCEEEEETTSCEE
T ss_pred EEEEECCCCCEEEEEeCCCcEE
Confidence 9999999999999998877544
No 29
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.5e-13 Score=102.48 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=73.6
Q ss_pred CceeceEEEEEeeC-----CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC----cceeeecc
Q 041215 2 GSIEGRVGVHHLDD-----SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS----KQRLKAMS 72 (136)
Q Consensus 2 gs~dG~v~i~~~d~-----~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~----~~~~~~~~ 72 (136)
|+.||+|++|..+. ........+.+|.. .|.+++|+|++.+|++++.|+.|++||+.. ..++..+.
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN-----EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred EeCCCcEEEEEcccCcCccccceeEEEEcCCCC-----cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 67899999955432 12345677888999 999999999999999999999999999943 24567788
Q ss_pred cCCCceeEEEEccCCCEEEEEEcccccc
Q 041215 73 RCGQPIPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 73 ~h~~~v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
+|...|.+++|+|++.+|++|+.|...+
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~ 178 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVR 178 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 9999999999999999999998877443
No 30
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.50 E-value=2e-13 Score=102.02 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=81.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc--CCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR--CGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~ 79 (136)
|+.||.|.+ ||.+++.....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+.. +...|.
T Consensus 202 g~~d~~v~~--wd~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 274 (340)
T 1got_B 202 GACDASAKL--WDVREGMCRQTFTGHES-----DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp EETTSCEEE--EETTTCSEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred EeCCCcEEE--EECCCCeeEEEEcCCcC-----CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence 677999988 78888889999999999 999999999999999999999999999998877666543 345799
Q ss_pred EEEEccCCCEEEEEEccccccccc
Q 041215 80 CSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
+++|+|++.++++|+.|......+
T Consensus 275 ~~~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEECCCCCEEEEECCCCeEEEEE
Confidence 999999999999998876544433
No 31
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.49 E-value=1.9e-13 Score=103.73 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=82.1
Q ss_pred CCceeceEEEEEeeCCCC-------cceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeec-
Q 041215 1 VGSIEGRVGVHHLDDSQQ-------SKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAM- 71 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~-------~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~- 71 (136)
+|+.||+|.+ ||..++ .....+.+|.. .|.+++|+|++ .+|++++.|+.|++||+.++..+..+
T Consensus 99 s~s~dg~v~v--w~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 99 SGSEDCTVMV--WEIPDGGLVLPLREPVITLEGHTK-----RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171 (402)
T ss_dssp EEETTSEEEE--EECCTTCCSSCBCSCSEEEECCSS-----CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEeCCCeEEE--EEccCCCCccccCCceEEecCCCC-----eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence 3678999988 555544 56788899999 99999999998 79999999999999999999988888
Q ss_pred -ccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215 72 -SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 72 -~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
..|...|.+++|+|++.+|++++.|......
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 203 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVI 203 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 7899999999999999999999887754433
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.2e-13 Score=99.49 Aligned_cols=97 Identities=13% Similarity=0.202 Sum_probs=71.5
Q ss_pred CCceeceEEEEEeeCCCCcceeEE-Ee-eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-------cceeeec
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTF-KC-HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-------KQRLKAM 71 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l-~~-h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-------~~~~~~~ 71 (136)
+|+.||+|.+|.++.........+ .. |.. .|.+++|+|++.+|++++.|+.|++||+.. ...+..+
T Consensus 29 s~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 103 (330)
T 2hes_X 29 TGSTDRKIKLVSVKYDDFTLIDVLDETAHKK-----AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII 103 (330)
T ss_dssp EEESSSCEEEEECSSSCCEEEEEECTTCCCS-----CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE
T ss_pred EEcCCCEEEEEEecCCCeEEEEEEecCCccC-----CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE
Confidence 367899999844432222344455 33 778 999999999999999999999999999853 3456778
Q ss_pred ccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215 72 SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 72 ~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
.+|...|.+++|+|++.+|++|+.|......
T Consensus 104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iw 134 (330)
T 2hes_X 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134 (330)
T ss_dssp C----CEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 8999999999999999999999887754433
No 33
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.49 E-value=1.8e-13 Score=103.83 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=80.3
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeC--CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec----ccC
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRD--GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM----SRC 74 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~--~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~----~~h 74 (136)
+||.||+|++ ||.+++.....+..+.. ..+...|.+++|+|++.+|++++.|+.|++||+.++..+..+ .+|
T Consensus 266 s~s~D~~i~l--wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 266 TGSDDGTCRL--FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp EECSSSCEEE--EETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred EEcCCCeEEE--EECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 3788999988 78888888877765432 111124889999999999999999999999999988877665 579
Q ss_pred CCceeEEEEccCCCEEEEEEcccccc
Q 041215 75 GQPIPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
.+.|.+++|+|++.+|++|+.|...+
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLK 369 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEE
Confidence 99999999999999999988876553
No 34
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.49 E-value=1.8e-13 Score=103.79 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=78.0
Q ss_pred CceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-----
Q 041215 2 GSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG----- 75 (136)
Q Consensus 2 gs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~----- 75 (136)
|+.||+|++ ||.+ .......+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+..+.
T Consensus 224 gs~D~~v~~--wd~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 296 (380)
T 3iz6_a 224 GSCDTTVRL--WDLRITSRAVRTYHGHEG-----DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296 (380)
T ss_dssp EETTSCEEE--EETTTTCCCCEEECCCSS-----CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred EECCCeEEE--EECCCCCcceEEECCcCC-----CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence 678999988 7766 4577788899999 99999999999999999999999999999988877765542
Q ss_pred --CceeEEEEccCCCEEEEEEccccc
Q 041215 76 --QPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 76 --~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
..|.+++|+|++.++++|+.|...
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred ccCceEEEEECCCCCEEEEEECCCCE
Confidence 358999999999999998877644
No 35
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.47 E-value=2.7e-13 Score=110.02 Aligned_cols=94 Identities=11% Similarity=0.106 Sum_probs=81.6
Q ss_pred CCceeceEEEEEeeCCC---CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc
Q 041215 1 VGSIEGRVGVHHLDDSQ---QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP 77 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~---~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 77 (136)
+||.||+|++|.++... +.....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~ 474 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-----FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD 474 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred EEeCCCcEEEEEccCCCcccccccceecCCCC-----cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC
Confidence 36889999996554321 334567889999 9999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEEccccc
Q 041215 78 IPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
|.+++|+|++.+|++|+.|...
T Consensus 475 v~~~~~s~~~~~l~s~s~D~~i 496 (694)
T 3dm0_A 475 VLSVAFSLDNRQIVSASRDRTI 496 (694)
T ss_dssp EEEEEECTTSSCEEEEETTSCE
T ss_pred EEEEEEeCCCCEEEEEeCCCEE
Confidence 9999999999999999887644
No 36
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.47 E-value=3.3e-13 Score=101.71 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=78.8
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+|+.||+|++ ||.+.......+..+. ..+.+.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.+
T Consensus 257 s~s~D~~v~l--wd~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~ 331 (354)
T 2pbi_B 257 SGSDDATCRL--YDLRADREVAIYSKES---IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST 331 (354)
T ss_dssp EEETTSCEEE--EETTTTEEEEEECCTT---CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred EEeCCCeEEE--EECCCCcEEEEEcCCC---cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEE
Confidence 3678999988 7777666655554321 2237899999999999999999999999999999989999999999999
Q ss_pred EEEccCCCEEEEEEccccc
Q 041215 81 STFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~ 99 (136)
++|+|++.+|++|+.|...
T Consensus 332 l~~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 332 LRVSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp EEECTTSSCEEEEETTSEE
T ss_pred EEECCCCCEEEEEcCCCCE
Confidence 9999999999999877643
No 37
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.46 E-value=2.6e-13 Score=100.62 Aligned_cols=94 Identities=12% Similarity=0.170 Sum_probs=76.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC--CCCEEEEEcCCCcEEEEeCCCc--ceeeecccCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP--IHHTFATAGSDGAFNFWDKDSK--QRLKAMSRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p--~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~h~~~ 77 (136)
||.||+|++|.+..........+.+|.. .|.+++|++ ++.+|++++.|+.|++||+.++ .....+.+|...
T Consensus 31 gs~D~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~ 105 (316)
T 3bg1_A 31 CSSDRSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS 105 (316)
T ss_dssp EETTTEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC
T ss_pred EeCCCeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc
Confidence 6789999995443322235678899999 999999975 4789999999999999999886 356677889999
Q ss_pred eeEEEEccC--CCEEEEEEcccccc
Q 041215 78 IPCSTFNTD--GSIFAYSVCYDWSK 100 (136)
Q Consensus 78 v~~v~~sp~--~~~l~s~~~dd~~~ 100 (136)
|++++|+|+ +.+|++|+.|....
T Consensus 106 V~~v~~~p~~~g~~lasgs~D~~i~ 130 (316)
T 3bg1_A 106 VNSVCWAPHDYGLILACGSSDGAIS 130 (316)
T ss_dssp CCEEEECCTTTCSCEEEECSSSCEE
T ss_pred eEEEEECCCCCCcEEEEEcCCCCEE
Confidence 999999998 77899888776443
No 38
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.46 E-value=9.7e-13 Score=100.75 Aligned_cols=91 Identities=10% Similarity=0.194 Sum_probs=78.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc--CCCcEEEEeCCCcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG--SDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
||.||+|++ ||..++.....+.. .. .+.++.|+|++..+++++ .|+.|++||+.++..+.++.+|.+.|+
T Consensus 297 gs~D~~I~i--wd~~t~~~~~~~~~-~~-----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~ 368 (420)
T 4gga_A 297 GTSDRHIRI--WNVCSGACLSAVDA-HS-----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 368 (420)
T ss_dssp CTTTCEEEE--EETTTTEEEEEEEC-SS-----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ecCCCEEEE--EeCCccccceeecc-cc-----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 578899988 78888888888764 45 788999999998777654 689999999999999999999999999
Q ss_pred EEEEccCCCEEEEEEcccccc
Q 041215 80 CSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~ 100 (136)
+|+|+|++.+|+||+.|...+
T Consensus 369 ~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 369 SLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEEECTTSSCEEEEETTTEEE
T ss_pred EEEEcCCCCEEEEEecCCeEE
Confidence 999999999999998887554
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.46 E-value=4.6e-13 Score=99.36 Aligned_cols=88 Identities=19% Similarity=0.274 Sum_probs=78.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||.+..+....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+..+ ..|.++
T Consensus 172 ~~~d~~i~~--wd~~~~~~~~~~~~h~~-----~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 243 (319)
T 3frx_A 172 AGNDKMVKA--WNLNQFQIEADFIGHNS-----NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL 243 (319)
T ss_dssp EETTSCEEE--EETTTTEEEEEECCCCS-----CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE
T ss_pred EeCCCEEEE--EECCcchhheeecCCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE
Confidence 567889988 77788888888889999 9999999999999999999999999999999888888654 789999
Q ss_pred EEccCCCEEEEEEccc
Q 041215 82 TFNTDGSIFAYSVCYD 97 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd 97 (136)
+|+|++.+++++..+.
T Consensus 244 ~~sp~~~~la~~~~~~ 259 (319)
T 3frx_A 244 AFSPNRYWLAAATATG 259 (319)
T ss_dssp EECSSSSEEEEEETTE
T ss_pred EEcCCCCEEEEEcCCC
Confidence 9999999999876544
No 40
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.45 E-value=3.2e-13 Score=101.96 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=73.0
Q ss_pred CceeceEEEEEeeCCCCcce----eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKN----FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~----~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 77 (136)
|+.||+|++ ||..+++.. ....+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...
T Consensus 111 ~s~dg~v~l--Wd~~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~ 183 (357)
T 4g56_B 111 ASDSGAVEL--WEILEKESLLVNKFAKYEHDD-----IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE 183 (357)
T ss_dssp EETTSCEEE--C--------CCCCEEECCCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EECCCEEEE--eeccccceeEEEeeccCCCCC-----CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC
Confidence 577899988 666554332 34446888 9999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCC-EEEEEEcccccc
Q 041215 78 IPCSTFNTDGS-IFAYSVCYDWSK 100 (136)
Q Consensus 78 v~~v~~sp~~~-~l~s~~~dd~~~ 100 (136)
|++++|++++. ++++++.|....
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEE
T ss_pred EEEEEEccCCCceeeeeccCCceE
Confidence 99999999875 677777766443
No 41
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.44 E-value=4.9e-13 Score=102.05 Aligned_cols=95 Identities=9% Similarity=-0.026 Sum_probs=69.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC------------------------------------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH------------------------------------ 45 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~------------------------------------ 45 (136)
||.|++|+| ||.++++.+++|.+|.. +...+.+++|+|++
T Consensus 199 gS~D~TIkI--WDl~TGk~l~tL~g~~~--~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~ 274 (356)
T 2w18_A 199 TTIMNNIVI--WNLKTGQLLKKMHIDDS--YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG 274 (356)
T ss_dssp EETTSEEEE--EETTTCCEEEEEECCC-----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred ecCCCcEEE--EECCCCcEEEEEcCCCc--ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence 688999998 88899999999876432 11134344444433
Q ss_pred ---------C------------EEEEEcCCCcEEEEeCCCcceeeecccCCCcee-EEEEccCCCEEEEEEcccccc
Q 041215 46 ---------H------------TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP-CSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 46 ---------~------------~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~dd~~~ 100 (136)
+ ++++++.|++|++||+.++++++++.+|...+. +++|+|++++|++|+.|...+
T Consensus 275 v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIk 351 (356)
T 2w18_A 275 VMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIF 351 (356)
T ss_dssp EEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEE
T ss_pred EEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEE
Confidence 2 357777899999999999999999999977655 689999999999998776543
No 42
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.44 E-value=8.9e-13 Score=95.96 Aligned_cols=98 Identities=15% Similarity=0.259 Sum_probs=80.3
Q ss_pred CceeceEEEEEeeCCCC--cceeEEEeeeCCCCccceeEEEEeC--CCCEEEEEcCCCcEEEEeCCCc---------cee
Q 041215 2 GSIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSEIYSVNSLNFHP--IHHTFATAGSDGAFNFWDKDSK---------QRL 68 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~--~~~~~l~~h~~~~~~~~v~~l~~~p--~~~~l~s~~~dg~v~vwd~~~~---------~~~ 68 (136)
|+.||.|.+|.++.... .....+.+|.. .|.+++|+| ++.+|++++.|+.|++||+.++ ..+
T Consensus 29 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 103 (351)
T 3f3f_A 29 CSSDQHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKL 103 (351)
T ss_dssp EETTSEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEE
T ss_pred eeCCCeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCccee
Confidence 67799999965543222 45677788999 999999999 5899999999999999999876 456
Q ss_pred eecccCCCceeEEEEccC--CCEEEEEEcccccccccc
Q 041215 69 KAMSRCGQPIPCSTFNTD--GSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 69 ~~~~~h~~~v~~v~~sp~--~~~l~s~~~dd~~~~~~~ 104 (136)
..+..|...|.+++|+|+ +.++++++.|......+.
T Consensus 104 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 104 CTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred eeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 778889999999999999 999999988875554443
No 43
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.44 E-value=1.1e-12 Score=96.28 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=76.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC-------------CCEEEEEcCCCcEEEEeCCCcc--
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI-------------HHTFATAGSDGAFNFWDKDSKQ-- 66 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~-------------~~~l~s~~~dg~v~vwd~~~~~-- 66 (136)
|+.||+|++|.++.........+.+|.. .|.+++|+|+ +.+|++++.|+.|++||+.++.
T Consensus 119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~ 193 (297)
T 2pm7_B 119 ASSDGKVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193 (297)
T ss_dssp EETTSEEEEEEBCSSSCBCCEEEECCSS-----CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE
T ss_pred EECCCcEEEEEecCCCceeeeeeecccC-----ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce
Confidence 6789999884443222223467788988 9999999997 4699999999999999998765
Q ss_pred --eeeecccCCCceeEEEEccCC---CEEEEEEcccccccc
Q 041215 67 --RLKAMSRCGQPIPCSTFNTDG---SIFAYSVCYDWSKGA 102 (136)
Q Consensus 67 --~~~~~~~h~~~v~~v~~sp~~---~~l~s~~~dd~~~~~ 102 (136)
....+.+|...|.+++|+|++ .+|++++.|...+..
T Consensus 194 ~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 566788999999999999985 789988887754433
No 44
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.43 E-value=2.5e-12 Score=94.83 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=78.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+|.++.........+..|.. .|.+++|+|++.+|++++.|+.|++||+.++..+. +..|...|.++
T Consensus 60 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~ 133 (368)
T 3mmy_A 60 GSWANDVRCWEVQDSGQTIPKAQQMHTG-----PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTI 133 (368)
T ss_dssp EETTSEEEEEEECTTSCEEEEEEEECSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEE
T ss_pred ECCCCcEEEEEcCCCCceeEEEeccccC-----CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEE
Confidence 6778999885553323334478888999 99999999999999999999999999999887655 55799999999
Q ss_pred EE--ccCCCEEEEEEccccccccc
Q 041215 82 TF--NTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 82 ~~--sp~~~~l~s~~~dd~~~~~~ 103 (136)
+| ++++.++++++.|......+
T Consensus 134 ~~~~~~~~~~l~~~~~dg~i~vwd 157 (368)
T 3mmy_A 134 HWIKAPNYSCVMTGSWDKTLKFWD 157 (368)
T ss_dssp EEEECSSCEEEEEEETTSEEEEEC
T ss_pred EEEeCCCCCEEEEccCCCcEEEEE
Confidence 99 89999999998877554443
No 45
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.43 E-value=7.7e-13 Score=97.08 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=67.5
Q ss_pred eeceEEEEEee--CCCCcceeEEEeeeCCCCccceeEEEEeCC-CCEEEEEcCCCcEEEEeCCCcc-----eeeecccCC
Q 041215 4 IEGRVGVHHLD--DSQQSKNFTFKCHRDGSEIYSVNSLNFHPI-HHTFATAGSDGAFNFWDKDSKQ-----RLKAMSRCG 75 (136)
Q Consensus 4 ~dG~v~i~~~d--~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~-~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~h~ 75 (136)
..|+..++... .+......+|++|.+ .|++|+|+|+ +++|++++.|+.|++||+.+.. ....+.+|.
T Consensus 12 d~g~~~~~~~~~~~~~~~l~~tL~GH~~-----~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~ 86 (340)
T 4aow_A 12 DLGTENLYFQSMMTEQMTLRGTLKGHNG-----WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 86 (340)
T ss_dssp --------------CEEEEEEEECCCSS-----CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS
T ss_pred CCCCccEEEEEccCCceEEEEEECCccC-----CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC
Confidence 34554443333 234455678999999 9999999998 4899999999999999987643 456778899
Q ss_pred CceeEEEEccCCCEEEEEEccccc
Q 041215 76 QPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
..|.+++|+|++.++++++.|...
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCEEEEEECCCCCEEEEEcccccc
Confidence 999999999999999999887643
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.2e-13 Score=108.60 Aligned_cols=94 Identities=5% Similarity=0.014 Sum_probs=81.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
||.||+|++ ||.++++...++.+|... ..|.+++|+|++..|++++.|+.|++||+.++.++..+.+|.+.|++|
T Consensus 329 ~S~D~tvkl--WD~~~~~~~~~~~~~~~~---~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sv 403 (524)
T 2j04_B 329 VAVDGYFYI--FNPKDIATTKTTVSRFRG---SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAI 403 (524)
T ss_dssp EETTSEEEE--ECGGGHHHHCEEEEECSC---CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred eccCCeEEE--EECCCCCccccccccccc---CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEE
Confidence 688999988 888888877788777530 047899999999999999999999999999988888888999999999
Q ss_pred EEccCCCEEEEEEcccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~ 100 (136)
+|+|++++|++|+.|....
T Consensus 404 a~Sp~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 404 GVSRLHPMVLAGSADGSLI 422 (524)
T ss_dssp ECCSSCCBCEEEETTTEEE
T ss_pred EeCCCCCeEEEEECCCEEE
Confidence 9999999999998877543
No 47
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.7e-12 Score=96.30 Aligned_cols=99 Identities=10% Similarity=0.178 Sum_probs=84.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcc--eeeecccCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQ--RLKAMSRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~ 77 (136)
|+.||.|.+|.++..+......+.+|.. .|.+++|+++ +.+|++++.|+.|++||+.++. .+..+..|...
T Consensus 29 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 103 (379)
T 3jrp_A 29 CSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 103 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred EECCCcEEEEecCCCcceeeeEecCCCC-----cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc
Confidence 5679999997766556777888889999 9999999877 8999999999999999999886 67778889999
Q ss_pred eeEEEEccC--CCEEEEEEccccccccccc
Q 041215 78 IPCSTFNTD--GSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 78 v~~v~~sp~--~~~l~s~~~dd~~~~~~~~ 105 (136)
|.+++|+|+ +.++++++.|.........
T Consensus 104 v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred eEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 999999999 9999999888765544443
No 48
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.42 E-value=9.7e-13 Score=95.76 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=76.6
Q ss_pred CceeceEEEEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCC----CEEEEEcCCCcEEEEeCCCc----------
Q 041215 2 GSIEGRVGVHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIH----HTFATAGSDGAFNFWDKDSK---------- 65 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~----~~l~s~~~dg~v~vwd~~~~---------- 65 (136)
|+.||.+.+ ++...+. ....+.+|.. .|.+++|+|++ .+|++++.|+.|++||+..+
T Consensus 188 ~~~~~~~~~--~~~~~~~~~~~~~~~~h~~-----~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 260 (351)
T 3f3f_A 188 SALEQAIIY--QRGKDGKLHVAAKLPGHKS-----LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESL 260 (351)
T ss_dssp EETTEEEEE--EECTTSCEEEEEECCCCCS-----CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------
T ss_pred ecCCCcEEE--EccCCCceeeeeecCCCCc-----ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcc
Confidence 455676644 3334333 3667778888 99999999998 79999999999999998764
Q ss_pred ------------------------------------ceeeecccCCCceeEEEEccCCCEEEEEEccccccccccc
Q 041215 66 ------------------------------------QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 66 ------------------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~ 105 (136)
..+..+.+|...|++++|+|++.+|++++.|.........
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 261 TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp ------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 4566778899999999999999999999888765444443
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.42 E-value=2e-12 Score=97.08 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=81.1
Q ss_pred Ccee---ceEEEEEeeCCCCcceeEEEe-------------eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215 2 GSIE---GRVGVHHLDDSQQSKNFTFKC-------------HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK 65 (136)
Q Consensus 2 gs~d---G~v~i~~~d~~~~~~~~~l~~-------------h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~ 65 (136)
|+.| |.|.+ ||.++++....+.. |.. .|.+++|+|++.+|++++.|+.|++||+.++
T Consensus 251 ~~~d~~~g~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 251 AHDSNSFGCITL--YETEFGERIGSLSVPTHSSQASLGEFAHSS-----WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp EEEETTEEEEEE--EETTTCCEEEEECBC--------CCBSBSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred EecCCCCceEEE--EECCCCcccceeccCcccccccccccccCC-----cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 4567 78877 88888888899888 888 9999999999999999999999999999999
Q ss_pred ceeeecc------cC---------------CCceeEEEEccCC----------CEEEEEEccccc
Q 041215 66 QRLKAMS------RC---------------GQPIPCSTFNTDG----------SIFAYSVCYDWS 99 (136)
Q Consensus 66 ~~~~~~~------~h---------------~~~v~~v~~sp~~----------~~l~s~~~dd~~ 99 (136)
..+..+. .| ...|.+++|+|++ .+|++++.|...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence 9988888 77 8999999999998 799988877654
No 50
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.4e-12 Score=94.47 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=79.0
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||.++++....+..|.. .|.+++|+|++ .|++++.|+.|++||+.++..+..+..|...|.++
T Consensus 201 ~~~dg~i~i--~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~ 272 (313)
T 3odt_A 201 CSNDGLIKL--VDMHTGDVLRTYEGHES-----FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV 272 (313)
T ss_dssp EETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEE
T ss_pred ccCCCeEEE--EECCchhhhhhhhcCCc-----eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEE
Confidence 567888877 78888899999999999 99999999999 58899999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEcccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~ 100 (136)
+|+|++.++ +++.|+...
T Consensus 273 ~~~~~~~~~-~~~~dg~i~ 290 (313)
T 3odt_A 273 DCMSNGDII-VGSSDNLVR 290 (313)
T ss_dssp EECTTSCEE-EEETTSCEE
T ss_pred EEccCCCEE-EEeCCCcEE
Confidence 999999854 566666443
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.42 E-value=1.8e-12 Score=95.06 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=71.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.|+.|.+ ||.++++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.+...+..+..+ ..|.++
T Consensus 191 ~~~d~~i~i--~d~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 262 (340)
T 4aow_A 191 CGWDKLVKV--WNLANCKLKTNHIGHTG-----YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINAL 262 (340)
T ss_dssp EETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEE
T ss_pred EcCCCEEEE--EECCCCceeeEecCCCC-----cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEee
Confidence 456788877 78888889999999999 9999999999999999999999999999988877777544 678888
Q ss_pred EEccCCCEEEEE
Q 041215 82 TFNTDGSIFAYS 93 (136)
Q Consensus 82 ~~sp~~~~l~s~ 93 (136)
+|+|++.+++.+
T Consensus 263 ~~~~~~~~~~~~ 274 (340)
T 4aow_A 263 CFSPNRYWLCAA 274 (340)
T ss_dssp EECSSSSEEEEE
T ss_pred ecCCCCceeecc
Confidence 888887766544
No 52
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.42 E-value=4.5e-12 Score=92.15 Aligned_cols=91 Identities=10% Similarity=0.176 Sum_probs=75.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc--CCCcEEEEeCCCcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG--SDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
|+.+++|.+ ||.......... .+.. .+..+.|+|.+..+++++ .|+.|++||+.++..+.++.+|.+.|+
T Consensus 217 ~~~~~~i~l--wd~~~~~~~~~~-~~~~-----~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~ 288 (318)
T 4ggc_A 217 GTSDRHIRI--WNVCSGACLSAV-DAHS-----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 288 (318)
T ss_dssp CTTTCEEEE--EETTTCCEEEEE-ECSS-----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred cCCCCEEEE--Eecccccccccc-ccee-----eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 456778877 666666655553 4666 899999999998766544 789999999999999999999999999
Q ss_pred EEEEccCCCEEEEEEcccccc
Q 041215 80 CSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~ 100 (136)
+|+|+|++.+|++|+.|...+
T Consensus 289 ~l~~spdg~~l~S~s~D~~v~ 309 (318)
T 4ggc_A 289 SLTMSPDGATVASAAADETLR 309 (318)
T ss_dssp EEEECTTSSCEEEEETTTEEE
T ss_pred EEEEcCCCCEEEEEecCCeEE
Confidence 999999999999998887554
No 53
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.42 E-value=1.5e-12 Score=97.73 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=84.6
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEe---e---eCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeec
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKC---H---RDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~---h---~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~ 71 (136)
+|+.||.|.+ ||.++++....+.. | .. .|.+++|+|++.+|++++.| +.|++||+.++..+..+
T Consensus 202 ~~~~dg~i~i--~d~~~~~~~~~~~~~~~h~~~~~-----~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~ 274 (397)
T 1sq9_A 202 TGFNNGTVQI--SELSTLRPLYNFESQHSMINNSN-----SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 274 (397)
T ss_dssp EECTTSEEEE--EETTTTEEEEEEECCC---CCCC-----CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred EEeCCCcEEE--EECCCCceeEEEeccccccccCC-----ccceEEECCCCCEEEEEecCCCCceEEEEECCCCccccee
Confidence 3677898887 78888888999988 8 88 99999999999999999999 99999999999989888
Q ss_pred cc-------------CCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215 72 SR-------------CGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 72 ~~-------------h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
.. |...|.+++|+|++.+|++++.|........
T Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 88 9999999999999999999988775544433
No 54
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.41 E-value=2.1e-13 Score=102.10 Aligned_cols=92 Identities=13% Similarity=0.171 Sum_probs=74.4
Q ss_pred CCceeceEEEEEeeCCCC--cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc---eeeecccCC
Q 041215 1 VGSIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ---RLKAMSRCG 75 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~--~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~h~ 75 (136)
+|+.||.|.+|.. .++ .....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++. ....+..|.
T Consensus 28 ~~~~d~~i~iw~~--~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~ 100 (377)
T 3dwl_C 28 TTTATNQVELYEQ--DGNGWKHARTFSDHDK-----IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN 100 (377)
T ss_dssp CCCSSSCBCEEEE--ETTEEEECCCBCCCSS-----CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCS
T ss_pred EecCCCEEEEEEc--cCCceEEEEEEecCCc-----eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC
Confidence 4678999998554 444 67778888999 99999999999999999999999999999876 566778899
Q ss_pred CceeEEEEccCCCEEEEEEccccc
Q 041215 76 QPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
..|.+++|+|++.+|++++.|...
T Consensus 101 ~~v~~~~~~~~~~~l~~~~~d~~i 124 (377)
T 3dwl_C 101 RAATFVRWSPNEDKFAVGSGARVI 124 (377)
T ss_dssp SCEEEEECCTTSSCCEEEESSSCE
T ss_pred CceEEEEECCCCCEEEEEecCCeE
Confidence 999999999999999998887644
No 55
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.41 E-value=2.7e-12 Score=95.82 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=76.6
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec---ccCCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM---SRCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~h~~~v 78 (136)
||.||+|++ ||.++++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+... ..... ..|...|
T Consensus 94 ~s~D~~v~l--wd~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 94 SSWDKTLRL--WDLRTGTTYKRFVGHQS-----EVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWV 165 (343)
T ss_dssp EETTSEEEE--EETTSSCEEEEEECCCS-----CEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCE
T ss_pred EcCCCcEEE--EECCCCcEEEEEcCCCC-----cEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCcee
Confidence 678999988 78888899999999999 9999999999999999999999999999743 33332 3688999
Q ss_pred eEEEEccCC----------CEEEEEEccccc
Q 041215 79 PCSTFNTDG----------SIFAYSVCYDWS 99 (136)
Q Consensus 79 ~~v~~sp~~----------~~l~s~~~dd~~ 99 (136)
.+++|+|++ .++++++.|...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 196 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence 999999987 689988877644
No 56
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.1e-12 Score=95.24 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=79.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||..+++....+..|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+. +...|.++
T Consensus 50 ~~~dg~i~v--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 121 (369)
T 3zwl_B 50 CSKDSSASV--WYSLNGERLGTLDGHTG-----TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRV 121 (369)
T ss_dssp EESSSCEEE--EETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred EeCCCEEEE--EeCCCchhhhhhhhcCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEE
Confidence 567898988 77788899999999999 99999999999999999999999999999998888886 88999999
Q ss_pred EEccCCCEEEEEEcc
Q 041215 82 TFNTDGSIFAYSVCY 96 (136)
Q Consensus 82 ~~sp~~~~l~s~~~d 96 (136)
+|+|++.++++++.+
T Consensus 122 ~~~~~~~~l~~~~~~ 136 (369)
T 3zwl_B 122 EFSPCGNYFLAILDN 136 (369)
T ss_dssp EECTTSSEEEEEECC
T ss_pred EEccCCCEEEEecCC
Confidence 999999999988776
No 57
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.41 E-value=2.1e-13 Score=104.09 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=78.1
Q ss_pred CceeceEEEEEeeCCCC---cceeEEEeeeCCCCccceeEEEEeC--------CCCEEEEEcCCCcEEEEeCCCcceeee
Q 041215 2 GSIEGRVGVHHLDDSQQ---SKNFTFKCHRDGSEIYSVNSLNFHP--------IHHTFATAGSDGAFNFWDKDSKQRLKA 70 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~---~~~~~l~~h~~~~~~~~v~~l~~~p--------~~~~l~s~~~dg~v~vwd~~~~~~~~~ 70 (136)
|+.|++|++|..+.... .....+.+|.+ .|.+++|+| ++++|++++.|++|++||+.++..+..
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~-----~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHHN-----FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCSS-----CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCCC-----ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence 67899999955433211 12334567888 999999998 788999999999999999988877777
Q ss_pred cccCCCceeEEEEccCCC-EEEEEEccccccccccc
Q 041215 71 MSRCGQPIPCSTFNTDGS-IFAYSVCYDWSKGAENH 105 (136)
Q Consensus 71 ~~~h~~~v~~v~~sp~~~-~l~s~~~dd~~~~~~~~ 105 (136)
+..|..+|.+++|+|++. +|++++.|...+..+..
T Consensus 182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~ 217 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWT 217 (393)
T ss_dssp EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECC
Confidence 888999999999999875 78888887765554443
No 58
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.41 E-value=1.3e-12 Score=106.43 Aligned_cols=91 Identities=9% Similarity=0.035 Sum_probs=83.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||..++.....+..|.. +|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|.+.|.++
T Consensus 31 ~~~~g~v~i--wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~ 103 (814)
T 3mkq_A 31 TLYSGRVEI--WNYETQVEVRSIQVTET-----PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (814)
T ss_dssp EETTSEEEE--EETTTTEEEEEEECCSS-----CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EeCCCEEEE--EECCCCceEEEEecCCC-----cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEE
Confidence 566888887 77788889999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccc
Q 041215 82 TFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~ 99 (136)
+|+|++.++++++.|...
T Consensus 104 ~~s~~~~~l~~~~~dg~i 121 (814)
T 3mkq_A 104 AVHPTKPYVLSGSDDLTV 121 (814)
T ss_dssp EECSSSSEEEEEETTSEE
T ss_pred EEeCCCCEEEEEcCCCEE
Confidence 999999999998877643
No 59
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.40 E-value=1.8e-12 Score=98.66 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=76.6
Q ss_pred CceeceEEEEEeeCCCCcceeEE-------EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc---------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTF-------KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK--------- 65 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l-------~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~--------- 65 (136)
|+.||.|++ ||.+++.....+ .+|.. .|.+++|+|++.+|++++.|+.|++||+.+.
T Consensus 225 ~s~d~~v~i--wd~~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 225 GSLDRAVRV--WDSETGFLVERLDSENESGTGHKD-----SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp EETTSCEEE--EETTTCCEEEEEC------CCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred EcCCCcEEE--EECCCCcEEEeecccccCCCCCCC-----CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 677899988 777777766665 45777 9999999999999999999999999998753
Q ss_pred ---ceeeecccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215 66 ---QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 66 ---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
.+...+.+|...|.+++|+|++.+|++|+.|......
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iw 337 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 3456677899999999999999999999888754433
No 60
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.40 E-value=7.1e-13 Score=98.23 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCC----CEEEEEcCCCcEEEEeCCCcc----eeeec
Q 041215 1 VGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIH----HTFATAGSDGAFNFWDKDSKQ----RLKAM 71 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~----~~l~s~~~dg~v~vwd~~~~~----~~~~~ 71 (136)
+|+.||+|++|.++... ......+.+|.. .|.+++|+|++ .+|++++.|+.|++|++.+.. ....+
T Consensus 184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-----~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~ 258 (316)
T 3bg1_A 184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-----WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL 258 (316)
T ss_dssp CCBTTSBCCEEEECTTSCEEEEECCBCCSS-----CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE
T ss_pred EecCCCeEEEEEeCCCCccceeeecccCCC-----ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh
Confidence 46789999995543211 135667788988 99999999987 789999999999999987621 12345
Q ss_pred ccCCCceeEEEEccCCCEEEEEEcccccc
Q 041215 72 SRCGQPIPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 72 ~~h~~~v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
..|...|.+++|+|++.+|++++.|....
T Consensus 259 ~~~~~~v~~v~~sp~g~~las~~~D~~v~ 287 (316)
T 3bg1_A 259 HKFNDVVWHVSWSITANILAVSGGDNKVT 287 (316)
T ss_dssp EECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred hcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence 57889999999999999999998877543
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.40 E-value=3.8e-12 Score=95.61 Aligned_cols=96 Identities=21% Similarity=0.321 Sum_probs=80.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCC----cceeeecccCCC
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDS----KQRLKAMSRCGQ 76 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~----~~~~~~~~~h~~ 76 (136)
|+.||.|.+ ||. .+.....+..|.. .|.+++|+|++. +|++++.|+.|++||+.+ +..+..+ .|..
T Consensus 181 ~~~d~~i~i--~d~-~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~ 251 (383)
T 3ei3_B 181 GDSTGRLLL--LGL-DGHEIFKEKLHKA-----KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK 251 (383)
T ss_dssp EETTSEEEE--EET-TSCEEEEEECSSS-----CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS
T ss_pred ECCCCCEEE--EEC-CCCEEEEeccCCC-----cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC
Confidence 567888887 666 4678888889999 999999999998 999999999999999987 5556666 7999
Q ss_pred ceeEEEEcc-CCCEEEEEEcccccccccccC
Q 041215 77 PIPCSTFNT-DGSIFAYSVCYDWSKGAENHN 106 (136)
Q Consensus 77 ~v~~v~~sp-~~~~l~s~~~dd~~~~~~~~~ 106 (136)
.|.+++|+| ++.+|++++.|..........
T Consensus 252 ~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 252 PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp CEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred ceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 999999999 999999998887655554443
No 62
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.40 E-value=2.5e-12 Score=97.86 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=80.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||..+++....+.+|.. .|.+++|+|++..|++++.|+.|++||+.++.+...+. +...+.++
T Consensus 141 ~~~d~~i~i--wd~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 141 GAEDRLIRI--WDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EcCCCeEEE--EECCCCcEEEEEccCCC-----CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 677899988 77788888899999999 99999999999999999999999999999988777664 55789999
Q ss_pred EEcc-CCCEEEEEEcccccccc
Q 041215 82 TFNT-DGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 82 ~~sp-~~~~l~s~~~dd~~~~~ 102 (136)
+|+| ++.++++|+.|......
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iw 234 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVW 234 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEE
T ss_pred EEECCCCCEEEEEcCCCcEEEE
Confidence 9999 89999999887754433
No 63
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.40 E-value=1.3e-12 Score=104.89 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=76.2
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeee--cccCCCc
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKA--MSRCGQP 77 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~--~~~h~~~ 77 (136)
+|+.||+|.+|.++......... ..|.. .|.+++|+|++.+|++++.|+.|++|++.+ +..+.. +..|...
T Consensus 465 sgs~D~~v~lwd~~~~~~~~~~~-~~h~~-----~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~ 538 (611)
T 1nr0_A 465 VGGQDSKVHVYKLSGASVSEVKT-IVHPA-----EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 538 (611)
T ss_dssp EEETTSEEEEEEEETTEEEEEEE-EECSS-----CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred EeCCCCeEEEEEccCCceeeeec-cCCCC-----ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccc
Confidence 36789999885554322222334 57888 999999999999999999999999999987 554443 3449999
Q ss_pred eeEEEEccCCCEEEEEEcccccccccc
Q 041215 78 IPCSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
|.+++|+|++++|++|+.|...+....
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 999999999999999988875544433
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.39 E-value=2.1e-12 Score=99.32 Aligned_cols=94 Identities=11% Similarity=0.119 Sum_probs=83.4
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+|+.||+|.+ ||..+++....+.+|.+ .|.+++|+|++ .|++++.|+.|++||+.++..+..+.+|.+.|.+
T Consensus 137 sgs~dg~i~v--wd~~~~~~~~~~~~h~~-----~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 208 (464)
T 3v7d_B 137 TGADDKMIRV--YDSINKKFLLQLSGHDG-----GVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 208 (464)
T ss_dssp EEETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEcCCCcEEE--EECCCCcEEEEEeCCCc-----CEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEE
Confidence 3678999988 78888899999999999 99999999987 9999999999999999999999999999999999
Q ss_pred EEEc--cCCCEEEEEEcccccccc
Q 041215 81 STFN--TDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 81 v~~s--p~~~~l~s~~~dd~~~~~ 102 (136)
++|+ +++.++++++.|......
T Consensus 209 l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 209 LDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp EEEEESSSCEEEEEEETTSCEEEE
T ss_pred EEEecCCCCCEEEEEcCCCcEEEe
Confidence 9998 577899998887754433
No 65
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.38 E-value=4.9e-12 Score=92.35 Aligned_cols=94 Identities=13% Similarity=0.207 Sum_probs=80.2
Q ss_pred CceeceEEEEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
|+.||.|.+ ||..+++ ....+..|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+..|...|.
T Consensus 115 ~~~d~~i~~--~d~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 115 GGEASTLSI--WDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp EESSSEEEE--EECCCC--EEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EcCCCcEEE--EECCCCCcceeeecccCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE
Confidence 567888888 5555544 6677778888 999999999999999999999999999999998899999999999
Q ss_pred EEEEccCCCEEEEEEcccccccc
Q 041215 80 CSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
+++|+|++.++++++.+.....+
T Consensus 188 ~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEECCCCCEEEEEecCCcEEEE
Confidence 99999999999998877654433
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.38 E-value=1.3e-12 Score=98.92 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=78.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC---C---
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC---G--- 75 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h---~--- 75 (136)
|+.||.|.+ ||..+++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+..+ .
T Consensus 157 ~s~d~~i~i--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 157 SSQDMQLKI--WSVKDGSNPRTLIGHRA-----TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp EETTSEEEE--EETTTCCCCEEEECCSS-----CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred EeCCCeEEE--EeCCCCcCceEEcCCCC-----cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 677899888 77788888899999999 9999999999999999999999999999998888777643 2
Q ss_pred ------------------CceeEEEEccCCCEEEEEEccccccccc
Q 041215 76 ------------------QPIPCSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 76 ------------------~~v~~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
..+.+++|+|++.++++++.+......+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence 4455556688999999998877544333
No 67
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.38 E-value=1.7e-12 Score=97.06 Aligned_cols=96 Identities=19% Similarity=0.126 Sum_probs=76.1
Q ss_pred CceeceEEEEEeeCCCCc---ceeEEEe-eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC--------------
Q 041215 2 GSIEGRVGVHHLDDSQQS---KNFTFKC-HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD-------------- 63 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~---~~~~l~~-h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~-------------- 63 (136)
|+.||.|.+ ||...+. ....+.. |.. .|.+++|+|++.+|++++.|+.|++||+.
T Consensus 118 ~~~d~~i~i--wd~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 190 (377)
T 3dwl_C 118 GSGARVISV--CYFEQENDWWVSKHLKRPLRS-----TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWG 190 (377)
T ss_dssp EESSSCEEE--CCC-----CCCCEEECSSCCS-----CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSC
T ss_pred EecCCeEEE--EEECCcccceeeeEeecccCC-----CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccc
Confidence 677899988 6666554 4667776 888 99999999999999999999999999985
Q ss_pred ----CcceeeecccCCCceeEEEEccCCCEEEEEEccccccccccc
Q 041215 64 ----SKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 64 ----~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~ 105 (136)
.+..+..+ .|...|.+++|+|++.+|++++.|.........
T Consensus 191 ~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 191 SRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp SCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred cccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 34566677 899999999999999999999888755544433
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.37 E-value=1.5e-12 Score=102.56 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=80.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEe-eeCCCCccceeEEEEeC----------CCCEEEEEcCCCcEEEEeCCCc-ceee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKC-HRDGSEIYSVNSLNFHP----------IHHTFATAGSDGAFNFWDKDSK-QRLK 69 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~-h~~~~~~~~v~~l~~~p----------~~~~l~s~~~dg~v~vwd~~~~-~~~~ 69 (136)
|+.||.|.+ ||..+++....+.+ |.. .|.+++|+| ++.+|++++.|+.|++||+.++ ..+.
T Consensus 506 ~~~dg~i~i--w~~~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 578 (615)
T 1pgu_A 506 GDVMGKILL--YDLQSREVKTSRWAFRTS-----KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 578 (615)
T ss_dssp EETTSCEEE--EETTTTEEEECCSCCCSS-----CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred cCCCCeEEE--eeCCCCcceeEeecCCCC-----ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech
Confidence 567899888 77788888888877 888 999999999 9999999999999999999987 7788
Q ss_pred ecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 70 AMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 70 ~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
.+.+|...|.+++|+|++. |++++.|...
T Consensus 579 ~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v 607 (615)
T 1pgu_A 579 ALNAHKDGVNNLLWETPST-LVSSGADACI 607 (615)
T ss_dssp ETTSSTTCEEEEEEEETTE-EEEEETTSCE
T ss_pred hhhcCccceEEEEEcCCCC-eEEecCCceE
Confidence 8999999999999999999 9988877644
No 69
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.37 E-value=3.5e-12 Score=96.77 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=77.1
Q ss_pred CceeceEEEEEeeCCC--CcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCc-------ceeeec
Q 041215 2 GSIEGRVGVHHLDDSQ--QSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSK-------QRLKAM 71 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~--~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~-------~~~~~~ 71 (136)
|+.||.|.+|.++... ......+.+|.. .|.+++|+| ++.+|++++.|+.|++||+.++ ..+..+
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~-----~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 127 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTA-----PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSS-----CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCC-----CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe
Confidence 6779999985543321 134556778999 999999999 8899999999999999999887 557788
Q ss_pred ccCCCceeEEEEccCC-CEEEEEEcccccc
Q 041215 72 SRCGQPIPCSTFNTDG-SIFAYSVCYDWSK 100 (136)
Q Consensus 72 ~~h~~~v~~v~~sp~~-~~l~s~~~dd~~~ 100 (136)
.+|...|.+++|+|++ .++++++.|....
T Consensus 128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~ 157 (402)
T 2aq5_A 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVIL 157 (402)
T ss_dssp ECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred cCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence 8999999999999998 6899888776443
No 70
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2.5e-12 Score=96.56 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=81.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc---------------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ--------------- 66 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~--------------- 66 (136)
++.||.|.+ ||.++++....+..|.. .|.+++|+|++.+|++++.|+.|++||+.++.
T Consensus 306 ~~~d~~i~i--~d~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 378 (425)
T 1r5m_A 306 CSMDGSVRL--WSLKQNTLLALSIVDGV-----PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN 378 (425)
T ss_dssp EETTSEEEE--EETTTTEEEEEEECTTC-----CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred EeCCCcEEE--EECCCCcEeEecccCCc-----cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence 567888877 78788888889988888 99999999999999999999999999998877
Q ss_pred -----eeeecccCCC--ceeEEEEccCCCEEEEEEccccc
Q 041215 67 -----RLKAMSRCGQ--PIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 67 -----~~~~~~~h~~--~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
.+..+..|.. .|.+++|+|++.+|++++.|...
T Consensus 379 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 379 PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred cccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 7888888866 99999999999999998877644
No 71
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.37 E-value=1.3e-12 Score=100.59 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=71.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecc--cCCCc
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMS--RCGQP 77 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~h~~~ 77 (136)
+|+.||+|.+|.++.........+.+|.+ .|.+|+|+| ++.+|++++.|+.|++||+..+....... .+...
T Consensus 137 sGs~dg~i~lWd~~~~~~~~~~~~~gH~~-----~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 211 (435)
T 4e54_B 137 VGSKGGDIMLWNFGIKDKPTFIKGIGAGG-----SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 211 (435)
T ss_dssp EEETTSCEEEECSSCCSCCEEECCCSSSC-----CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred EEeCCCEEEEEECCCCCceeEEEccCCCC-----CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCcc
Confidence 47889999995443333444555668888 999999998 57899999999999999998754332222 23457
Q ss_pred eeEEEEccCCCEEEEEEccccc
Q 041215 78 IPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
+.+++|+|++.+|++|+.|...
T Consensus 212 ~~~~~~~~~~~~l~~g~~dg~i 233 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGDNVGNV 233 (435)
T ss_dssp CCCEEEETTTTEEEEECSSSBE
T ss_pred EEEEEECCCCCEEEEEeCCCcE
Confidence 8899999999999998877643
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.37 E-value=7.1e-12 Score=92.45 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=79.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC----CCEEEEEcCCCcEEEEeCCCcceeeecccCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI----HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~ 77 (136)
++.+|.|.+ ||..++.....+..+....+...|.+++|+|+ +.+|++++.|+.|++||+.++..+..+.+|...
T Consensus 40 ~~~~~~v~v--w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 117 (366)
T 3k26_A 40 TVGSNRVTL--YECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 117 (366)
T ss_dssp EEETTEEEE--EEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC
T ss_pred ECCCCEEEE--EEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc
Confidence 345677776 66677777777777664333337999999999 569999999999999999999999999999999
Q ss_pred eeEEEEcc-CCCEEEEEEcccccc
Q 041215 78 IPCSTFNT-DGSIFAYSVCYDWSK 100 (136)
Q Consensus 78 v~~v~~sp-~~~~l~s~~~dd~~~ 100 (136)
|.+++|+| ++.++++++.|....
T Consensus 118 i~~~~~~~~~~~~l~s~~~dg~i~ 141 (366)
T 3k26_A 118 INELKFHPRDPNLLLSVSKDHALR 141 (366)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEE
T ss_pred EEEEEECCCCCCEEEEEeCCCeEE
Confidence 99999999 899999988876443
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2e-12 Score=108.68 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=75.8
Q ss_pred CCceeceEEEEEeeCCCCcce--eEEE---------eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc---
Q 041215 1 VGSIEGRVGVHHLDDSQQSKN--FTFK---------CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ--- 66 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~--~~l~---------~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~--- 66 (136)
+|+.||+|++ ||..++... ..+. +|.. .|.+++|+|++++|++++.|+.|++|++.++.
T Consensus 452 Sgs~DgtVrl--Wd~~~g~~~~~~~~~~~l~~~~~~~h~~-----~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~ 524 (902)
T 2oaj_A 452 TGHSNGSVRI--YDASHGDIQDNASFEVNLSRTLNKAKEL-----AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS 524 (902)
T ss_dssp EEETTSEEEE--EESSCCTTTTTBCEEEEHHHHTTCSSSC-----CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred EecCCCcEEE--EECCCccccCCceEEeechhhcCCCCCC-----ceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence 3688999999 555544321 1121 5667 99999999999999999999999999987652
Q ss_pred ------------------------------------------eeeecccCCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215 67 ------------------------------------------RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 67 ------------------------------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
++..+.+|.++|++|+|+|+| +||+|+.|...+..+.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 356777899999999999999 9999988886655554
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.36 E-value=5.4e-12 Score=93.61 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=76.9
Q ss_pred CceeceEEEEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee--ecccCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK--AMSRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~h~~~ 77 (136)
|+.||.|.+ ||..+++ ....+..|.. .|.+++|+|++.+|++++.|+.|++||+.++.... .+..|...
T Consensus 26 ~~~d~~v~i--~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 98 (372)
T 1k8k_C 26 CPNNHEVHI--YEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98 (372)
T ss_dssp ECSSSEEEE--EEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC
T ss_pred EeCCCEEEE--EeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc
Confidence 567899988 4545554 7888889999 99999999999999999999999999998876443 34678899
Q ss_pred eeEEEEccCCCEEEEEEccccc
Q 041215 78 IPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
|.+++|+|++.++++++.+...
T Consensus 99 v~~~~~~~~~~~l~~~~~d~~v 120 (372)
T 1k8k_C 99 ARCVRWAPNEKKFAVGSGSRVI 120 (372)
T ss_dssp EEEEEECTTSSEEEEEETTSSE
T ss_pred eeEEEECCCCCEEEEEeCCCEE
Confidence 9999999999999999877643
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=96.45 Aligned_cols=95 Identities=23% Similarity=0.345 Sum_probs=74.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEE-----eeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCc----------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFK-----CHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSK---------- 65 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~-----~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~---------- 65 (136)
|+.||.|.+ ||.+++.....+. .|.. .|.+++|+|++. +|++++.|+.|++||+.++
T Consensus 230 ~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 230 TSLEGKFHV--FDMRTQHPTKGFASVSEKAHKS-----TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp EESTTEEEE--EEEEEEETTTEEEEEEEECCSS-----CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred ECCCCeEEE--EeCcCCCcccceeeeccCCCcC-----CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence 577899988 5555555444443 7888 999999999997 8999999999999998753
Q ss_pred ---------ceeeecccCCCceeEEEEccCCCEEE-EEEccccccccc
Q 041215 66 ---------QRLKAMSRCGQPIPCSTFNTDGSIFA-YSVCYDWSKGAE 103 (136)
Q Consensus 66 ---------~~~~~~~~h~~~v~~v~~sp~~~~l~-s~~~dd~~~~~~ 103 (136)
..+..+..|...|.+++|+|++.+++ +++.|.......
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred CccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 35667888999999999999999988 676665543333
No 76
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.7e-12 Score=99.16 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=79.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEe--eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc-cCCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKC--HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS-RCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~--h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~h~~~v 78 (136)
|+.||.|.+ ||.++++....+.. |.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+. .|..+|
T Consensus 188 ~~~d~~i~i--wd~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 260 (437)
T 3gre_A 188 LTNLSRVII--FDIRTLERLQIIENSPRHG-----AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI 260 (437)
T ss_dssp EETTSEEEE--EETTTCCEEEEEECCGGGC-----CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE
T ss_pred EeCCCeEEE--EeCCCCeeeEEEccCCCCC-----ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce
Confidence 567888887 88888999999988 788 99999999999999999999999999999998888775 778899
Q ss_pred eEEEEcc----CCCEEEEEEcccccccc
Q 041215 79 PCSTFNT----DGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 79 ~~v~~sp----~~~~l~s~~~dd~~~~~ 102 (136)
.+++|+| ++.++++++.|......
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 9996654 57789988777644333
No 77
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.2e-11 Score=92.29 Aligned_cols=99 Identities=10% Similarity=-0.003 Sum_probs=75.8
Q ss_pred CceeceEEEEEe-------eCCCCcceeEEE-eeeCCCCccceeEEEEeC--CCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215 2 GSIEGRVGVHHL-------DDSQQSKNFTFK-CHRDGSEIYSVNSLNFHP--IHHTFATAGSDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 2 gs~dG~v~i~~~-------d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p--~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 71 (136)
||.||++.+|.. |..++..+..+. .|.. +|.+++|+| ++.+|++++.|+.|++||+.++..+...
T Consensus 91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 165 (343)
T 3lrv_A 91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN-----EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH 165 (343)
T ss_dssp ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS-----CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC-----CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 678999998643 333444444443 4556 899999999 9999999999999999999998886655
Q ss_pred cc-CCCceeEEEEccCCCEEEEEEccccccccccc
Q 041215 72 SR-CGQPIPCSTFNTDGSIFAYSVCYDWSKGAENH 105 (136)
Q Consensus 72 ~~-h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~ 105 (136)
.. +...|.+++|+|++.++++|+.|......+..
T Consensus 166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 33 45689999999999999999887765544433
No 78
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.34 E-value=7.5e-12 Score=93.92 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=81.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||..++.....+..|.. .|.+++|+|++ .+++++.|+.|++||+.++..+..+..|...|.++
T Consensus 265 ~~~d~~i~i--~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~ 336 (425)
T 1r5m_A 265 ASDDGTLRI--WHGGNGNSQNCFYGHSQ-----SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG 336 (425)
T ss_dssp EETTSCEEE--ECSSSBSCSEEECCCSS-----CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred EcCCCEEEE--EECCCCccceEecCCCc-----cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEE
Confidence 567888877 78888888888888988 99999999999 99999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEccccc
Q 041215 82 TFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~ 99 (136)
+|+|++.+|++++.+...
T Consensus 337 ~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 337 RISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp EECTTSSEEEEEETTSCE
T ss_pred EEcCCCCEEEEEECCCeE
Confidence 999999999999877643
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.34 E-value=9e-12 Score=95.78 Aligned_cols=92 Identities=14% Similarity=0.197 Sum_probs=82.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||.++++....+.+|.. .|.+++|+|++..+++++.|+.|++||+.++..+..+.+|...|.++
T Consensus 286 ~~~d~~i~v--wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 358 (464)
T 3v7d_B 286 GSYDNTLIV--WDVAQMKCLYILSGHTD-----RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 358 (464)
T ss_dssp EETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EeCCCeEEE--EECCCCcEEEEecCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 677899888 78888899999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEEcccccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~~~ 102 (136)
+|+ +.++++++.|......
T Consensus 359 ~~~--~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 359 RLS--DKFLVSAAADGSIRGW 377 (464)
T ss_dssp EEC--SSEEEEEETTSEEEEE
T ss_pred EEc--CCEEEEEeCCCcEEEE
Confidence 997 5789988887754433
No 80
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.9e-12 Score=97.59 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=80.0
Q ss_pred Cceec---eEEEEEeeCCCC-cceeEEE-eeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecccCC
Q 041215 2 GSIEG---RVGVHHLDDSQQ-SKNFTFK-CHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG 75 (136)
Q Consensus 2 gs~dG---~v~i~~~d~~~~-~~~~~l~-~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~ 75 (136)
|+.|| .|.+ ||.+++ .....+. +|.. .|.+++|+| ++.+|++++.|+.|++||+.++..+..+..|.
T Consensus 233 ~~~d~~~~~i~~--~d~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~ 305 (416)
T 2pm9_A 233 ATGSDNDPSILI--WDLRNANTPLQTLNQGHQK-----GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG 305 (416)
T ss_dssp EECCSSSCCCCE--EETTSTTSCSBCCCSCCSS-----CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred EECCCCCceEEE--EeCCCCCCCcEEeecCccC-----ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence 45566 7777 777764 5667777 8888 999999999 88999999999999999999999999999999
Q ss_pred CceeEEEEccCC-CEEEEEEcccccccc
Q 041215 76 QPIPCSTFNTDG-SIFAYSVCYDWSKGA 102 (136)
Q Consensus 76 ~~v~~v~~sp~~-~~l~s~~~dd~~~~~ 102 (136)
..|.+++|+|++ .++++++.|......
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred CceEEEEECCCCCCEEEEEecCCcEEEE
Confidence 999999999999 799988877654433
No 81
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.1e-12 Score=103.04 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=78.0
Q ss_pred CCceeceEEEEEeeCCCC-cceeEEEeeeCCCCccceeEE--EEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCC-
Q 041215 1 VGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDGSEIYSVNSL--NFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCG- 75 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~-~~~~~l~~h~~~~~~~~v~~l--~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~- 75 (136)
+||.||+|++ ||.+++ .+...+..|.. .|.++ +|+|++ .+|++++.|++|++||+.++.++..+.+|.
T Consensus 282 sgs~DgtV~l--WD~~~~~~~~~~~~~H~~-----~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 282 CGFKNGFVAE--FDLTDPEVPSFYDQVHDS-----YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp EEETTSEEEE--EETTBCSSCSEEEECSSS-----CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred EEeCCCEEEE--EECCCCCCceEEeecccc-----cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence 4788999998 777655 45567889999 99999 568888 899999999999999999887776666664
Q ss_pred -CceeEEEEccCCCEEEEEEccccccccc
Q 041215 76 -QPIPCSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 76 -~~v~~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
..|.+++|+|++..+++++.|+..+..+
T Consensus 355 ~~~v~~v~fsp~~~~l~s~~~d~tv~lwd 383 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYSDGASSLRAVP 383 (524)
T ss_dssp CCSCCCEEEETTTTEEEEECSSSEEEEEE
T ss_pred cCcccceEeCCCcCeEEEeCCCCcEEEEE
Confidence 3589999999999999888777544443
No 82
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.33 E-value=2.2e-12 Score=99.34 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=76.4
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceee---ecccCCC
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLK---AMSRCGQ 76 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~---~~~~h~~ 76 (136)
+|+.||.|.+ ||.+ ++....+.+|.. .|.+++|+|++. +|++++.|+.|++||+.+..... ...+|..
T Consensus 226 ~g~~dg~i~~--wd~~-~~~~~~~~~h~~-----~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~ 297 (435)
T 4e54_B 226 TGDNVGNVIL--LNMD-GKELWNLRMHKK-----KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH 297 (435)
T ss_dssp EECSSSBEEE--EESS-SCBCCCSBCCSS-----CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS
T ss_pred EEeCCCcEee--eccC-cceeEEEecccc-----eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc
Confidence 3678999988 5554 356677888999 999999999984 88899999999999998765433 3357899
Q ss_pred ceeEEEEccCCCEEEEEEcccccccc
Q 041215 77 PIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
.|++++|+|++.+|++++.|......
T Consensus 298 ~v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 298 PVNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp CEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred cccceeECCCCCeeEEEcCCCEEEEE
Confidence 99999999999999999888755443
No 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.33 E-value=4.7e-12 Score=93.93 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=78.5
Q ss_pred CceeceEEEEEee----------------CCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215 2 GSIEGRVGVHHLD----------------DSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK 65 (136)
Q Consensus 2 gs~dG~v~i~~~d----------------~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~ 65 (136)
|+.||.+.+|.+. ...+.....+..|.. .|.+++|+|++.+|++++.|+.|++||+.++
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-----WVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-----CEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-----eEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 5678999884432 335677778888888 9999999999999999999999999999999
Q ss_pred ceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 66 QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 66 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
..+..+..|..+|.+++|+|++.+++++ .++..
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i 267 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSLVAAG-HDCFP 267 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSC
T ss_pred ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeE
Confidence 9999999999999999999999988877 55433
No 84
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.33 E-value=1.3e-11 Score=90.06 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=79.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||.++++....+..|.. .|.+++|+|++..|++++.|+.|++||+.++..+..+ .+...+.++
T Consensus 159 ~~~dg~v~~--~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~ 230 (337)
T 1gxr_A 159 CCSDGNIAV--WDLHNQTLVRQFQGHTD-----GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSL 230 (337)
T ss_dssp EETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEE
T ss_pred EeCCCcEEE--EeCCCCceeeeeecccC-----ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEE
Confidence 567888877 78888888889988999 9999999999999999999999999999998877766 577899999
Q ss_pred EEccCCCEEEEEEcccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~ 100 (136)
+|+|++.++++++.+....
T Consensus 231 ~~s~~~~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp EECTTSSEEEEEETTSCEE
T ss_pred EECCCCCEEEEEcCCCcEE
Confidence 9999999999988776443
No 85
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=7.1e-12 Score=105.36 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=64.4
Q ss_pred eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee-----ecc-cCCCceeEEEEc-----cCC--
Q 041215 21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK-----AMS-RCGQPIPCSTFN-----TDG-- 87 (136)
Q Consensus 21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~-----~~~-~h~~~v~~v~~s-----p~~-- 87 (136)
+..+.+|.+ .|++++|+|+| +|++|+.|+.|++||+.+...+. .+. +|.+.|++|+|+ ||+
T Consensus 568 ~~~l~~h~~-----~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~ 641 (902)
T 2oaj_A 568 STAVHANKG-----KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYS 641 (902)
T ss_dssp EEEECCCSC-----SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSE
T ss_pred eEEEEcCCC-----cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCc
Confidence 566778888 99999999999 99999999999999998776553 343 889999999999 886
Q ss_pred -CEEEEEEccccccccc
Q 041215 88 -SIFAYSVCYDWSKGAE 103 (136)
Q Consensus 88 -~~l~s~~~dd~~~~~~ 103 (136)
.+|++|+.|...+..+
T Consensus 642 ~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 642 SILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEEEEETTSEEEEEE
T ss_pred ceEEEEEecCCcEEEEE
Confidence 7999998887554443
No 86
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.32 E-value=1.1e-11 Score=105.53 Aligned_cols=90 Identities=17% Similarity=0.292 Sum_probs=81.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||+|.+ ||..++.....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.++
T Consensus 633 ~~~d~~i~v--w~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~ 705 (1249)
T 3sfz_A 633 CGADKTLQV--FKAETGEKLLDIKAHED-----EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705 (1249)
T ss_dssp EETTSCEEE--EETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EeCCCeEEE--EECCCCCEEEEeccCCC-----CEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 677899988 78888999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEcc--CCCEEEEEEcccc
Q 041215 82 TFNT--DGSIFAYSVCYDW 98 (136)
Q Consensus 82 ~~sp--~~~~l~s~~~dd~ 98 (136)
+|+| ++.++++|+.|..
T Consensus 706 ~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 706 HFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp EECSSSSCCEEEEEETTSC
T ss_pred EEecCCCceEEEEEeCCCe
Confidence 9999 4558888877654
No 87
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.32 E-value=3.7e-11 Score=88.50 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=78.4
Q ss_pred CceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
|+.||.|.+ ||.++ ......+..|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+. +...+.+
T Consensus 193 ~~~dg~i~i--~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~ 264 (369)
T 3zwl_B 193 GHKDGKISK--YDVSNNYEYVDSIDLHEK-----SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNT 264 (369)
T ss_dssp EETTSEEEE--EETTTTTEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred EcCCCEEEE--EECCCCcEeEEEEecCCC-----ceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCcee
Confidence 567888877 77777 677888888999 99999999999999999999999999999998887775 7789999
Q ss_pred EEEccCCCEEEEEEccc
Q 041215 81 STFNTDGSIFAYSVCYD 97 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd 97 (136)
++|+|++.++++++.++
T Consensus 265 ~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 265 AVITPLKEFIILGGGQE 281 (369)
T ss_dssp EEECSSSSEEEEEECCC
T ss_pred EEecCCCceEEEeecCC
Confidence 99999999999988766
No 88
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.32 E-value=1.6e-11 Score=94.38 Aligned_cols=94 Identities=20% Similarity=0.277 Sum_probs=78.3
Q ss_pred CceeceEEEEEeeCCCC---cceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCC-cceeeecccCCC
Q 041215 2 GSIEGRVGVHHLDDSQQ---SKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDS-KQRLKAMSRCGQ 76 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~---~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~ 76 (136)
|+.||.|.+ ||.++. +....+..|.. .|.+++|+|++. +|++++.|+.|++||+.+ ...+..+..|..
T Consensus 250 ~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~-----~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~ 322 (430)
T 2xyi_A 250 VADDQKLMI--WDTRNNNTSKPSHTVDAHTA-----EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD 322 (430)
T ss_dssp EETTSEEEE--EETTCSCSSSCSEEEECCSS-----CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS
T ss_pred EeCCCeEEE--EECCCCCCCcceeEeecCCC-----CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC
Confidence 567888888 666655 67778888998 999999999995 799999999999999987 566788889999
Q ss_pred ceeEEEEccCCC-EEEEEEcccccccc
Q 041215 77 PIPCSTFNTDGS-IFAYSVCYDWSKGA 102 (136)
Q Consensus 77 ~v~~v~~sp~~~-~l~s~~~dd~~~~~ 102 (136)
.|.+++|+|++. +|++++.|+....+
T Consensus 323 ~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 323 EIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred CEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 999999999985 68888777644433
No 89
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.32 E-value=1.8e-11 Score=91.46 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=78.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcc-eeeec--------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQ-RLKAM-------- 71 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~-~~~~~-------- 71 (136)
|+.||.|.+ ||.+++.....+..|.. .|.+++|+|++. +|++++.|+.|++||+.++. .+..+
T Consensus 162 ~~~~~~v~~--~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 162 GTRGPKVQL--CDLKSGSCSHILQGHRQ-----EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp EESSSSEEE--EESSSSCCCEEECCCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred EcCCCeEEE--EeCCCcceeeeecCCCC-----cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 567888887 77788888899999999 999999999997 69999999999999997654 23333
Q ss_pred -------ccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215 72 -------SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 72 -------~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
..|...|.+++|+|++.++++++.|......
T Consensus 235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 5688999999999999999999888754433
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.31 E-value=4.6e-11 Score=89.65 Aligned_cols=98 Identities=17% Similarity=0.069 Sum_probs=77.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||.|.+ ||... .....+..+.. +...|.+++|+|++.+|++++.|+.|++||+ ++..+..+..|...|.++
T Consensus 137 ~~~d~~i~i--wd~~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 137 SSIRGATTL--RDFSG-SVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp EETTTEEEE--EETTS-CEEEEEECCCC--SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE
T ss_pred EeCCCEEEE--EECCC-CceEEEeccCC--CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE
Confidence 577899988 56554 44555554431 1118999999999999999999999999999 567788899999999999
Q ss_pred EEccCCC-EEEEEEccccccccccc
Q 041215 82 TFNTDGS-IFAYSVCYDWSKGAENH 105 (136)
Q Consensus 82 ~~sp~~~-~l~s~~~dd~~~~~~~~ 105 (136)
+|+|++. ++++++.|......+..
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGG
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999 89988887765554444
No 91
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.31 E-value=5.5e-12 Score=98.07 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=73.9
Q ss_pred CceeceEEEEEeeCCCC--------cc---eeEEEeeeCCCCccceeEEEEeCC-CCEEEEEcCCCcEEEEeCCCcceee
Q 041215 2 GSIEGRVGVHHLDDSQQ--------SK---NFTFKCHRDGSEIYSVNSLNFHPI-HHTFATAGSDGAFNFWDKDSKQRLK 69 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~--------~~---~~~l~~h~~~~~~~~v~~l~~~p~-~~~l~s~~~dg~v~vwd~~~~~~~~ 69 (136)
|+.||.|.+| |..+. +. ...+.+|.. .|.+++|+|+ +.+|++++.|+.|++||+.++..+.
T Consensus 114 gs~d~~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~ 186 (434)
T 2oit_A 114 SEYGSIIAFF--DVRTFSNEAKQQKRPFAYHKLLKDAGG-----MVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC 186 (434)
T ss_dssp TTTEEEEEEE--EHHHHHCTTCSSCCCSEEEECCCSGGG-----SEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred cCCCceEEEE--EccccccCCcCCcceeeeeeccCCCCC-----ceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence 5779999884 44322 22 344455777 9999999998 6899999999999999999887666
Q ss_pred ecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 70 AMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 70 ~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
...+|...|.+++|+|++.+|++|+.|+..
T Consensus 187 ~~~~~~~~v~~v~wspdg~~lasgs~dg~v 216 (434)
T 2oit_A 187 ATLPSTVAVTSVCWSPKGKQLAVGKQNGTV 216 (434)
T ss_dssp EEECGGGCEEEEEECTTSSCEEEEETTSCE
T ss_pred eccCCCCceeEEEEcCCCCEEEEEcCCCcE
Confidence 666788999999999999999999887644
No 92
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.31 E-value=2.6e-11 Score=92.78 Aligned_cols=92 Identities=12% Similarity=0.198 Sum_probs=77.0
Q ss_pred ceeceEEEEEeeCCCCcceeEEE--eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFK--CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~--~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+.|++|.+ ||..+++....+. .|.. .|++|+|+|+|.+|++|+.|+.|++||+.++..+..+.+|...+.+
T Consensus 122 gld~tV~l--Wd~~tg~~~~~~~~~~~~~-----~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~ 194 (420)
T 4gga_A 122 ALDNSVYL--WSASSGDILQLLQMEQPGE-----YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 194 (420)
T ss_dssp EETTEEEE--EETTTCCEEEEEECCSTTC-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EeCCEEEE--EECCCCCEEEEEEecCCCC-----cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence 35788877 7888888777665 4556 8999999999999999999999999999999999999999999998
Q ss_pred EEEccCCCEEEEEEccccccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
+++ ++.++++|+.|.......
T Consensus 195 ~s~--~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 195 LSW--NSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp EEE--ETTEEEEEETTSEEEEEE
T ss_pred Eee--CCCEEEEEeCCCceeEee
Confidence 887 567899888776554443
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.8e-11 Score=100.79 Aligned_cols=98 Identities=10% Similarity=0.178 Sum_probs=84.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcc--eeeecccCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQ--RLKAMSRCGQP 77 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~ 77 (136)
|+.||.|.+|.++..+......+.+|.. +|.+++|+|+ +.+|++++.||.|++||+.++. .+..+..|...
T Consensus 27 g~~dg~I~vwd~~~~~~~~~~~l~~h~~-----~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~ 101 (753)
T 3jro_A 27 CSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 101 (753)
T ss_dssp EETTTEEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred EECCCcEEEEecCCCCCccceeccCCcC-----ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC
Confidence 6789999996665556677888889999 9999999988 8999999999999999999876 66778889999
Q ss_pred eeEEEEccC--CCEEEEEEcccccccccc
Q 041215 78 IPCSTFNTD--GSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 78 v~~v~~sp~--~~~l~s~~~dd~~~~~~~ 104 (136)
|.+++|+|+ +.++++|+.|........
T Consensus 102 V~~v~~sp~~~~~~l~sgs~dg~I~vwdl 130 (753)
T 3jro_A 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEF 130 (753)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred eEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence 999999999 999999988876554443
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=3.8e-11 Score=88.93 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=76.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-------------CCCEEEEEcCCCcEEEEeCCCcc--
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-------------IHHTFATAGSDGAFNFWDKDSKQ-- 66 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-------------~~~~l~s~~~dg~v~vwd~~~~~-- 66 (136)
|+.||.|.+|.++.........+..|.. .|.+++|+| ++.+|++++.|+.|++||+.++.
T Consensus 121 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 121 ASSDGKVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195 (379)
T ss_dssp EETTSEEEEEECCTTSCCCEEEEECCTT-----CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred ecCCCcEEEEecCCCCceeeEEecCCCC-----ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence 5778999884443333355566778888 999999999 68999999999999999987653
Q ss_pred --eeeecccCCCceeEEEEccC---CCEEEEEEcccccccc
Q 041215 67 --RLKAMSRCGQPIPCSTFNTD---GSIFAYSVCYDWSKGA 102 (136)
Q Consensus 67 --~~~~~~~h~~~v~~v~~sp~---~~~l~s~~~dd~~~~~ 102 (136)
....+.+|...|.+++|+|+ +.++++++.|......
T Consensus 196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 44677789999999999999 8899998887754433
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.30 E-value=2e-11 Score=92.75 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=74.9
Q ss_pred CceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
|+.||.|.+ ||.+ .......+..|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+..|...|.+
T Consensus 192 ~~~dg~i~i--~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 192 GSRSGAIHH--HDVRIANHQIGTLQGHSS-----EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp EETTSEEEE--EETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred EcCCCCEEE--EecccCcceeeEEcCCCC-----CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 677888887 6766 4566788888999 9999999999999999999999999999999888899899999999
Q ss_pred EEEccCCC-EEEEEE
Q 041215 81 STFNTDGS-IFAYSV 94 (136)
Q Consensus 81 v~~sp~~~-~l~s~~ 94 (136)
++|+|++. ++++++
T Consensus 265 ~~~~p~~~~ll~~~~ 279 (401)
T 4aez_A 265 VAWCPWQSNLLATGG 279 (401)
T ss_dssp EEECTTSTTEEEEEC
T ss_pred EEECCCCCCEEEEec
Confidence 99999775 555553
No 96
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.30 E-value=1.3e-11 Score=100.20 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=77.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||+|++ ||.++.+....+.+|.+ .|.+++|+|++.+|++++.|+.|++||+.++..+..+.. ...|.++
T Consensus 537 ~s~d~~v~v--wd~~~~~~~~~~~~h~~-----~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~ 608 (694)
T 3dm0_A 537 ASWDKTVKV--WNLSNCKLRSTLAGHTG-----YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHAL 608 (694)
T ss_dssp EETTSCEEE--EETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEE
T ss_pred EeCCCeEEE--EECCCCcEEEEEcCCCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEE
Confidence 677999988 77788888899999999 999999999999999999999999999999988877754 4789999
Q ss_pred EEccCCCEEEEEEcc
Q 041215 82 TFNTDGSIFAYSVCY 96 (136)
Q Consensus 82 ~~sp~~~~l~s~~~d 96 (136)
+|+|++.+++++...
T Consensus 609 ~~sp~~~~l~~~~~~ 623 (694)
T 3dm0_A 609 CFSPNRYWLCAATEH 623 (694)
T ss_dssp EECSSSSEEEEEETT
T ss_pred EEcCCCcEEEEEcCC
Confidence 999999988876543
No 97
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.30 E-value=9.4e-12 Score=97.94 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=80.0
Q ss_pred Cce-eceEEEEEeeCCCCcce-eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCce
Q 041215 2 GSI-EGRVGVHHLDDSQQSKN-FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPI 78 (136)
Q Consensus 2 gs~-dG~v~i~~~d~~~~~~~-~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v 78 (136)
|+. ||.+.+ ||..++... ..+..|.. .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+ |...|
T Consensus 462 ~~~~d~~i~~--~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v 534 (615)
T 1pgu_A 462 GLEEGNTIQV--FKLSDLEVSFDLKTPLRA-----KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI 534 (615)
T ss_dssp EETTTSCEEE--EETTEEEEEEECSSCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred eecCCCeEEE--EECCCccccccccCCccC-----ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCce
Confidence 344 788877 666655443 55566777 999999999999999999999999999999999988888 99999
Q ss_pred eEEEEcc----------CCCEEEEEEcccccccccc
Q 041215 79 PCSTFNT----------DGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 79 ~~v~~sp----------~~~~l~s~~~dd~~~~~~~ 104 (136)
.+++|+| ++.+|++++.|........
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred eEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 9999999 9999999988875544433
No 98
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.29 E-value=2.2e-11 Score=98.20 Aligned_cols=93 Identities=13% Similarity=0.223 Sum_probs=70.4
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce-------eeec--
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR-------LKAM-- 71 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~-------~~~~-- 71 (136)
++|.||++.+ ||... .+..+. |...-....|.+++|+|+|++|++++.||.|++||+.++.. +.++
T Consensus 102 s~s~dg~V~i--wd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~ 176 (588)
T 2j04_A 102 VLSNNGNVSV--FKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL 176 (588)
T ss_dssp EEETTSCEEE--EETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC
T ss_pred EEeCCCcEEE--EeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec
Confidence 3678999988 66443 455555 55411122499999999999999999999999999998752 4565
Q ss_pred --ccCCCceeEEEEccCCCEEEEEEcccccc
Q 041215 72 --SRCGQPIPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 72 --~~h~~~v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
.+|.++|.+++|+|++ +++++.|...+
T Consensus 177 ~~~gh~~~V~sVawSPdg--Laass~D~tVr 205 (588)
T 2j04_A 177 SDAGSKDWVTHIVWYEDV--LVAALSNNSVF 205 (588)
T ss_dssp SCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred ccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence 5678899999999999 66666766443
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.28 E-value=2.3e-11 Score=93.55 Aligned_cols=91 Identities=20% Similarity=0.325 Sum_probs=77.0
Q ss_pred CCceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC--------------
Q 041215 1 VGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS-------------- 64 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~-------------- 64 (136)
+|+.||.|.+ ||.+. ......+..|.. .|.+++|+|++ .+|++++.|+.|++||+..
T Consensus 295 tg~~dg~v~v--wd~~~~~~~~~~~~~h~~-----~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 367 (430)
T 2xyi_A 295 TGSADKTVAL--WDLRNLKLKLHSFESHKD-----EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367 (430)
T ss_dssp EEETTSEEEE--EETTCTTSCSEEEECCSS-----CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred EEeCCCeEEE--EeCCCCCCCeEEeecCCC-----CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC
Confidence 3677899888 77665 567888889999 99999999999 5799999999999999876
Q ss_pred cceeeecccCCCceeEEEEccCCC-EEEEEEcccc
Q 041215 65 KQRLKAMSRCGQPIPCSTFNTDGS-IFAYSVCYDW 98 (136)
Q Consensus 65 ~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~dd~ 98 (136)
...+..+.+|...|.+++|+|++. ++++++.|+.
T Consensus 368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402 (430)
T ss_dssp TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence 256677888999999999999999 7887776653
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.28 E-value=3.9e-11 Score=87.17 Aligned_cols=88 Identities=13% Similarity=0.208 Sum_probs=73.8
Q ss_pred ceeceEEEEEeeCCCCcceeEEEe--eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKC--HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~--h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+.|++|+| ||..+++....+.. |.. .|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...+.+
T Consensus 42 g~D~tV~i--Wd~~tg~~~~~~~~~~~~~-----~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~ 114 (318)
T 4ggc_A 42 ALDNSVYL--WSASSGDILQLLQMEQPGE-----YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 114 (318)
T ss_dssp EETTEEEE--EETTTCCEEEEEECCSTTC-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred EeCCEEEE--EECCCCCEEEEEEecCCCC-----eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE
Confidence 45888887 78888888877764 555 8999999999999999999999999999999999999999887776
Q ss_pred EEEccCCCEEEEEEccccc
Q 041215 81 STFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~ 99 (136)
+.+ ++.++++++.+...
T Consensus 115 ~~~--~~~~l~s~~~~~~~ 131 (318)
T 4ggc_A 115 LSW--NSYILSSGSRSGHI 131 (318)
T ss_dssp EEE--ETTEEEEEETTSEE
T ss_pred eec--CCCEEEEEecCCce
Confidence 554 66788888776643
No 101
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.27 E-value=2.3e-11 Score=99.19 Aligned_cols=91 Identities=22% Similarity=0.341 Sum_probs=80.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~ 80 (136)
|+.||.|.+ ||..++.....+..|.. .|.+++|+|++..|++++.|+.|++||+.++ .....+.+|...|.+
T Consensus 73 ~~~dg~i~v--w~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 73 GSDDFRIRV--FNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp EETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred EeCCCeEEE--EECCCCcEEEEEecCCC-----CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence 567888888 77788889999999999 9999999999999999999999999999876 666788889999999
Q ss_pred EEEcc-CCCEEEEEEccccc
Q 041215 81 STFNT-DGSIFAYSVCYDWS 99 (136)
Q Consensus 81 v~~sp-~~~~l~s~~~dd~~ 99 (136)
++|+| ++..+++++.|...
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp EEEETTEEEEEEEEETTSEE
T ss_pred EEEEcCCCCEEEEEeCCCeE
Confidence 99999 88899998877644
No 102
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.27 E-value=3.9e-11 Score=102.23 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=84.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 79 (136)
|+.||.|.+ ||..+++....+.+|.. .|.+++|+|+ +.++++++.|+.|++||+.++..+..+.+|.+.|.
T Consensus 675 ~~~d~~v~v--wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 675 CSADKKVKI--WDSATGKLVHTYDEHSE-----QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747 (1249)
T ss_dssp EETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred EeCCCeEEE--EECCCCceEEEEcCCCC-----cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence 567888888 78888999999999999 9999999995 46899999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEEcccccccc
Q 041215 80 CSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
+++|+|++.++++++.|......
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vw 770 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLW 770 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEE
T ss_pred EEEEecCCCEEEEEECCCeEEEE
Confidence 99999999999999888754433
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.26 E-value=3.9e-11 Score=89.68 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=73.7
Q ss_pred CceeceEEEEEeeCCCCc-ceeEE---------------EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQS-KNFTF---------------KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK 65 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~-~~~~l---------------~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~ 65 (136)
|+.||.|.+ ||.+.+. ....+ ..|.. .|.+++|+|++.+|++++.|+.|++||+.++
T Consensus 205 ~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 205 ASADSRVKL--WDVRRASGCLITLDQHNGKKSQAVESANTAHNG-----KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp EETTSCEEE--EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EcCCCcEEE--EECCCCCcccccccccccccceeeccccccccC-----ceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 677889888 6665443 33333 45666 9999999999999999999999999998754
Q ss_pred c-----------------------------------------------eeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215 66 Q-----------------------------------------------RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 66 ~-----------------------------------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
. .+..+.+|...|.+++|+|++.+|++++.|..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence 3 34455678899999999999999999988875
Q ss_pred cccc
Q 041215 99 SKGA 102 (136)
Q Consensus 99 ~~~~ 102 (136)
....
T Consensus 358 i~iw 361 (408)
T 4a11_B 358 ILAW 361 (408)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.5e-11 Score=93.63 Aligned_cols=94 Identities=9% Similarity=-0.035 Sum_probs=77.0
Q ss_pred CceeceEEEEEeeCCCCcc----eeEEEeeeCCCCccceeEEEEeCC---CCEEEEEcCCCcEEEEeCCCcceeee-ccc
Q 041215 2 GSIEGRVGVHHLDDSQQSK----NFTFKCHRDGSEIYSVNSLNFHPI---HHTFATAGSDGAFNFWDKDSKQRLKA-MSR 73 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~----~~~l~~h~~~~~~~~v~~l~~~p~---~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~ 73 (136)
|+.||.+.+ |+..++.. ...+.+|.. .|.+++|+|+ +.+|++++.|+.|++||+.++..+.. +.+
T Consensus 167 ~~~~g~v~~--~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 167 ADKFGDVYS--IDINSIPEEKFTQEPILGHVS-----MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EETTSEEEE--EETTSCCCSSCCCCCSEECSS-----CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred EeCCCcEEE--EecCCcccccccceeeecccC-----ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 455677755 66655443 337788999 9999999999 89999999999999999999888777 568
Q ss_pred CCCceeEEEEccCCCEEEEEEccccccccc
Q 041215 74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~ 103 (136)
|...|.+++|+ ++.+|++++.|.......
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd 268 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWD 268 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEE
Confidence 99999999999 999999998876544433
No 105
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.25 E-value=3.6e-11 Score=90.55 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=79.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEee------eCCCCccceeEEEEeCCC-CEEEEEcCCC---cEEEEeCCCc-ceeee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCH------RDGSEIYSVNSLNFHPIH-HTFATAGSDG---AFNFWDKDSK-QRLKA 70 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h------~~~~~~~~v~~l~~~p~~-~~l~s~~~dg---~v~vwd~~~~-~~~~~ 70 (136)
|+.||.|.+ ||.++++....+..+ .. .|.+++|+|++ .+|++++.|+ .|++||+.++ ..+..
T Consensus 184 ~~~dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~ 256 (416)
T 2pm9_A 184 AGSSNFASI--WDLKAKKEVIHLSYTSPNSGIKQ-----QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT 256 (416)
T ss_dssp ESSSSCEEE--EETTTTEEEEEECCCCCSSCCCC-----CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred EcCCCCEEE--EECCCCCcceEEeccccccccCC-----ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence 577899988 777888888887766 56 89999999998 6999999998 9999999986 56677
Q ss_pred cc-cCCCceeEEEEcc-CCCEEEEEEcccccccc
Q 041215 71 MS-RCGQPIPCSTFNT-DGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 71 ~~-~h~~~v~~v~~sp-~~~~l~s~~~dd~~~~~ 102 (136)
+. +|...|.+++|+| ++.+|++++.|......
T Consensus 257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 77 8999999999999 89999999887754433
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.24 E-value=1.1e-10 Score=89.56 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=80.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+|+.||.|.+ ||..+++....+.+|.. .|.+++| ++.+|++++.||.|++||+.++..+..+..|...|.+
T Consensus 148 ~g~~dg~i~i--wd~~~~~~~~~~~~h~~-----~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 218 (435)
T 1p22_A 148 SGLRDNTIKI--WDKNTLECKRILTGHTG-----SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH 218 (435)
T ss_dssp EEESSSCEEE--EESSSCCEEEEECCCSS-----CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE
T ss_pred EEeCCCeEEE--EeCCCCeEEEEEcCCCC-----cEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEE
Confidence 3678999988 77788899999999999 9999998 6789999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEcccccccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
++|++ .++++|+.|........
T Consensus 219 l~~~~--~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 219 LRFNN--GMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp EECCT--TEEEEEETTSCEEEEEC
T ss_pred EEEcC--CEEEEeeCCCcEEEEeC
Confidence 99974 58898888776544443
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.24 E-value=4.9e-11 Score=92.00 Aligned_cols=95 Identities=15% Similarity=0.036 Sum_probs=77.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEE--eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee----ecccCC
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFK--CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK----AMSRCG 75 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~--~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~----~~~~h~ 75 (136)
|+.||.|.+|.++..++.....+. .|.. .|.+++|+|++.+|++++.++.|++|++.++.... .+.+|.
T Consensus 121 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~ 195 (450)
T 2vdu_B 121 ADSDKSLLVFDVDKTSKNVLKLRKRFCFSK-----RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV 195 (450)
T ss_dssp EGGGTEEEEEEECSSSSSCEEEEEEEECSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS
T ss_pred ECCCCeEEEEECcCCCCceeeeeecccCCC-----CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc
Confidence 577899998555322677777776 4457 89999999999999999999999999998776443 778899
Q ss_pred CceeEEEEccC---CCEEEEEEccccccc
Q 041215 76 QPIPCSTFNTD---GSIFAYSVCYDWSKG 101 (136)
Q Consensus 76 ~~v~~v~~sp~---~~~l~s~~~dd~~~~ 101 (136)
..|++++|+|+ +.+|++|+.|.....
T Consensus 196 ~~v~~~~~sp~~~~~~~l~s~~~d~~i~v 224 (450)
T 2vdu_B 196 SMLTDVHLIKDSDGHQFIITSDRDEHIKI 224 (450)
T ss_dssp SCEEEEEEEECTTSCEEEEEEETTSCEEE
T ss_pred CceEEEEEcCCCCCCcEEEEEcCCCcEEE
Confidence 99999999999 989999988764433
No 108
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.24 E-value=4.2e-11 Score=88.15 Aligned_cols=92 Identities=9% Similarity=0.100 Sum_probs=73.9
Q ss_pred eceEEEEEeeCCCCcceeEE-EeeeCCCCccceeEEEEeCC---CCEEEEEcCCCcEEEEeCCCcc-eeeecccCCCcee
Q 041215 5 EGRVGVHHLDDSQQSKNFTF-KCHRDGSEIYSVNSLNFHPI---HHTFATAGSDGAFNFWDKDSKQ-RLKAMSRCGQPIP 79 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~---~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~ 79 (136)
||.|.+ ||..+++..... ..|.. .|.+++|+|+ +.+|++++.|+.|++||+.++. .+..+.+|...|.
T Consensus 43 d~~v~i--w~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 115 (357)
T 3i2n_A 43 TGVIQL--YEIQHGDLKLLREIEKAK-----PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN 115 (357)
T ss_dssp CEEEEE--EEECSSSEEEEEEEEESS-----CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE
T ss_pred CcEEEE--EeCCCCcccceeeecccC-----cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE
Confidence 888888 555555544332 36888 9999999999 6999999999999999999887 7888889999999
Q ss_pred EEE------EccCCCEEEEEEccccccccc
Q 041215 80 CST------FNTDGSIFAYSVCYDWSKGAE 103 (136)
Q Consensus 80 ~v~------~sp~~~~l~s~~~dd~~~~~~ 103 (136)
+++ |+|++.+|++++.|.......
T Consensus 116 ~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd 145 (357)
T 3i2n_A 116 AIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145 (357)
T ss_dssp EEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred EEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence 995 578999999998877554433
No 109
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.24 E-value=6.7e-11 Score=89.86 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=78.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC-CcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD-SKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~~ 80 (136)
|+.||.|.+ ||..+++....+..|.. .|.+++|+ +..|++++.|+.|++||+. ....+..+..|.+.|.+
T Consensus 152 ~~~dg~i~i--wd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 222 (401)
T 4aez_A 152 GLGNGLVDI--YDVESQTKLRTMAGHQA-----RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222 (401)
T ss_dssp EETTSCEEE--EETTTCCEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred ECCCCeEEE--EECcCCeEEEEecCCCC-----ceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeE
Confidence 567898888 77788888999999999 99999995 5799999999999999998 45667888899999999
Q ss_pred EEEccCCCEEEEEEcccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~ 100 (136)
++|+|++.++++++.|....
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp EEECTTSSEEEEEETTSCEE
T ss_pred EEEcCCCCEEEEEeCCCeEE
Confidence 99999999999998876543
No 110
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.24 E-value=2.6e-11 Score=92.19 Aligned_cols=90 Identities=18% Similarity=0.311 Sum_probs=70.7
Q ss_pred CCceeceEEEEEeeCCCCc-----------ceeEEEeee------------CCCCccceeEEEEeCCC--CEEEEEcCCC
Q 041215 1 VGSIEGRVGVHHLDDSQQS-----------KNFTFKCHR------------DGSEIYSVNSLNFHPIH--HTFATAGSDG 55 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~-----------~~~~l~~h~------------~~~~~~~v~~l~~~p~~--~~l~s~~~dg 55 (136)
+|+.||.|.+|.+ .++. ....+.+|. . .|.+++|+|++ ..|++++.|+
T Consensus 45 ~g~~dg~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-----~V~~l~~~~~~~~~~l~s~s~d~ 117 (447)
T 3dw8_B 45 TGDKGGRVVIFQQ--EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEE-----KINKIRWLPQKNAAQFLLSTNDK 117 (447)
T ss_dssp EEETTSEEEEEEE--CC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECC-----CCCEEEECCCCSSSEEEEEECSS
T ss_pred EEcCCCeEEEEEe--cCCCCCCcccccceeEecccccccccccccccccccC-----ceEEEEEcCCCCcceEEEeCCCC
Confidence 3678999999555 4333 467788887 7 89999999998 7999999999
Q ss_pred cEEEEeCCCccee---------------------------------------ee-cccCCCceeEEEEccCCCEEEEEEc
Q 041215 56 AFNFWDKDSKQRL---------------------------------------KA-MSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 56 ~v~vwd~~~~~~~---------------------------------------~~-~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.|++||+.++... .. ..+|...|.+++|+|++.+|++| .
T Consensus 118 ~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 196 (447)
T 3dw8_B 118 TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D 196 (447)
T ss_dssp CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C
T ss_pred eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C
Confidence 9999998764331 12 35799999999999999999987 5
Q ss_pred ccc
Q 041215 96 YDW 98 (136)
Q Consensus 96 dd~ 98 (136)
|..
T Consensus 197 d~~ 199 (447)
T 3dw8_B 197 DLR 199 (447)
T ss_dssp SSE
T ss_pred CCe
Confidence 553
No 111
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.23 E-value=5.3e-11 Score=86.12 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=73.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEe-eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKC-HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~-h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
|+.||.+.+ || .......+.. |.. .+.+++|+|++. +++++.|+.|++||+.++..+..+..|...|.+
T Consensus 161 ~~~d~~i~i--~d--~~~~~~~~~~~~~~-----~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 230 (313)
T 3odt_A 161 ASADKTIKL--WQ--NDKVIKTFSGIHND-----VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC 230 (313)
T ss_dssp EETTSCEEE--EE--TTEEEEEECSSCSS-----CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EECCCCEEE--Ee--cCceEEEEeccCcc-----cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEE
Confidence 567888888 55 3455566665 777 999999999988 889999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEcccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~ 100 (136)
++|+|++ .+++++.|....
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~ 249 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVR 249 (313)
T ss_dssp EEECTTS-CEEEEETTSEEE
T ss_pred EEEecCC-CEEEEecCCEEE
Confidence 9999999 577777776443
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.22 E-value=5.7e-11 Score=90.35 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=70.7
Q ss_pred eeceEEEEEeeCCC-CcceeE-------EEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcce----eee
Q 041215 4 IEGRVGVHHLDDSQ-QSKNFT-------FKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQR----LKA 70 (136)
Q Consensus 4 ~dG~v~i~~~d~~~-~~~~~~-------l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~----~~~ 70 (136)
.||.|.+ ||... ...... +..|.. .|.+++|+|++ .+|++++.|+.|++||+.++.. +..
T Consensus 196 ~d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 268 (447)
T 3dw8_B 196 DDLRINL--WHLEITDRSFNIVDIKPANMEELTE-----VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKL 268 (447)
T ss_dssp CSSEEEE--EETTEEEEEEEEEECCCSSGGGCCC-----CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred CCCeEEE--EECCCCCceeeeeecccccccccCc-----ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeE
Confidence 5888888 66663 333332 346777 99999999999 9999999999999999998876 677
Q ss_pred cccCCC------------ceeEEEEccCCCEEEEEEcccccccc
Q 041215 71 MSRCGQ------------PIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 71 ~~~h~~------------~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
+..|.. .|.+++|+|++.+|++++. ......
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw 311 (447)
T 3dw8_B 269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW 311 (447)
T ss_dssp ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence 777765 8999999999999998876 543333
No 113
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.20 E-value=6.7e-11 Score=90.80 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=76.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEe---eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-----cc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKC---HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-----SR 73 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~---h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-----~~ 73 (136)
|+.||.|.+ ||.++++....+.. |.. .|.+++|+ +.+|++++.||.|++||+.++..+..+ ..
T Consensus 335 ~~~dg~i~v--wd~~~~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 405 (445)
T 2ovr_B 335 GNADSTVKI--WDIKTGQCLQTLQGPNKHQS-----AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 405 (445)
T ss_dssp EETTSCEEE--EETTTCCEEEEECSTTSCSS-----CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred EeCCCeEEE--EECCCCcEEEEEccCCCCCC-----CEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCC
Confidence 677899988 77788888888876 667 89999996 589999999999999999999888777 46
Q ss_pred CCCceeEEEEccCCCEEEEEEcccc
Q 041215 74 CGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 74 h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
|.+.|.+++|+|++.++++|+.|..
T Consensus 406 ~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 406 SGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSS
T ss_pred CCceEEEEEecCCEEEEEEcccCCC
Confidence 7899999999999999999877764
No 114
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.20 E-value=1.1e-10 Score=85.68 Aligned_cols=92 Identities=11% Similarity=0.072 Sum_probs=73.9
Q ss_pred CceeceEEEEEeeCCC-Cc--ceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCc------ceeeec
Q 041215 2 GSIEGRVGVHHLDDSQ-QS--KNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSK------QRLKAM 71 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~-~~--~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~------~~~~~~ 71 (136)
|+.||.|.+ ||.+. +. .......|.. .+.+++|+| ++.++++++.|+.|++|++... .....+
T Consensus 166 ~~~d~~i~i--~d~~~~~~~~~~~~~~~~~~-----~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 166 GMNNSQVQW--FRLPLCEDDNGTIEESGLKY-----QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp EESTTEEEE--EESSCCTTCCCEEEECSCSS-----CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred EeCCCeEEE--EECCccccccceeeecCCCC-----ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 567888888 66655 33 3333445667 999999999 9999999999999999999876 667777
Q ss_pred ccCCC---------ceeEEEEccCCCEEEEEEcccccc
Q 041215 72 SRCGQ---------PIPCSTFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 72 ~~h~~---------~v~~v~~sp~~~~l~s~~~dd~~~ 100 (136)
..|.. .|.+++|+|++.+|++++.|....
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence 77755 999999999999999998876443
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.20 E-value=1.1e-10 Score=87.91 Aligned_cols=91 Identities=11% Similarity=0.061 Sum_probs=71.5
Q ss_pred Cceece-EEEEEeeCCCCcceeEEE-e-eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeecc----
Q 041215 2 GSIEGR-VGVHHLDDSQQSKNFTFK-C-HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAMS---- 72 (136)
Q Consensus 2 gs~dG~-v~i~~~d~~~~~~~~~l~-~-h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~---- 72 (136)
||.||+ |++ ||.++++....+. + |.. .|.+++|+|++.+|++++.|+.|++||+..... ...+.
T Consensus 213 ~s~d~~~v~i--wd~~~~~~~~~~~~g~h~~-----~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 213 CSQDGTIIRV--FKTEDGVLVREFRRGLDRA-----DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp EETTCSEEEE--EETTTCCEEEEEECTTCCS-----CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred EeCCCCEEEE--EECCCCcEEEEEEcCCCCC-----cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 678998 888 8888899999998 5 888 999999999999999999999999999875421 11110
Q ss_pred -----------------cCCCceeEEEEccCCCEEEEEEccccc
Q 041215 73 -----------------RCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 73 -----------------~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
....+...++|++++..+++++.|.--
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 112334779999999999988776533
No 116
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.17 E-value=1.9e-10 Score=88.22 Aligned_cols=89 Identities=17% Similarity=0.278 Sum_probs=79.2
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
+|+.||.|.+ ||.++++....+.+|.. .|.++.++ +..+++++.|+.|++||+.++..+..+.+|...|.+
T Consensus 271 s~~~dg~i~v--wd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 341 (435)
T 1p22_A 271 SASGDRTIKV--WNTSTCEFVRTLNGHKR-----GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC 341 (435)
T ss_dssp EEETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEeCCCeEEE--EECCcCcEEEEEcCCCC-----cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEE
Confidence 3677899987 88888999999999999 99999995 589999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEEcccccc
Q 041215 81 STFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 81 v~~sp~~~~l~s~~~dd~~~ 100 (136)
++| ++.++++|+.|....
T Consensus 342 ~~~--~~~~l~sg~~dg~i~ 359 (435)
T 1p22_A 342 IRF--DNKRIVSGAYDGKIK 359 (435)
T ss_dssp EEC--CSSEEEEEETTSCEE
T ss_pred EEe--cCCEEEEEeCCCcEE
Confidence 999 788999998877544
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.17 E-value=5.8e-11 Score=90.49 Aligned_cols=93 Identities=14% Similarity=-0.007 Sum_probs=59.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeC--------------CCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCc
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRD--------------GSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSK 65 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~--------------~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~ 65 (136)
++.|+++.+ ||...+.....+..|.. .... ....+.++|. +.++++++.|+.|++||+.++
T Consensus 273 ~s~d~~i~v--wd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 273 MCKSGAWLR--WNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP-SLLGACPHPRYMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp ECTTSEEEE--EEC-------------------CCSCSEEEECSSC-CSSCCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred EeCCCCEEE--EECccCCCCceEeeecCccccEEEccccccccccC-cceeEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence 567888888 66665555545444433 0000 1122334432 246788889999999999999
Q ss_pred ceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 66 QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 66 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.....+..|..+|.+|+|+|+|++||+++.+.
T Consensus 350 ~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 350 DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp TCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 88888888999999999999999999987665
No 118
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.14 E-value=3.7e-10 Score=85.39 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=70.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee--ecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK--AMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~h~~~v~ 79 (136)
|+.|++|+| ||..+++....+. |.. .|.+++|+|+|.+|++++.++ +.+|+..++..+. ....|...|.
T Consensus 153 ~~~d~~i~i--wd~~~~~~~~~~~-~~~-----~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 153 SKVPAIMRI--IDPSDLTEKFEIE-TRG-----EVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp SCSSCEEEE--EETTTTEEEEEEE-CSS-----CCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEE
T ss_pred CCCCCEEEE--eECCCCcEEEEeC-CCC-----ceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEE
Confidence 456888888 8888888888875 778 899999999999999998655 6667777666543 3456888999
Q ss_pred EEEEccCCCEEEEEEccc
Q 041215 80 CSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~dd 97 (136)
+++|+|++.++++++.+.
T Consensus 224 ~v~fspdg~~l~~~s~d~ 241 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKK 241 (365)
T ss_dssp EEEEEETTEEEEEEEESS
T ss_pred EEEEcCCCCEEEEEecCC
Confidence 999999999999987765
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.6e-10 Score=93.81 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=76.8
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-------------CCCEEEEEcCCCcEEEEeCCCc--
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-------------IHHTFATAGSDGAFNFWDKDSK-- 65 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-------------~~~~l~s~~~dg~v~vwd~~~~-- 65 (136)
+|+.||.|.+|.++.........+..|.. .|.+++|+| ++..|++++.||.|++||+.++
T Consensus 118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~-----~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~ 192 (753)
T 3jro_A 118 VASSDGKVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192 (753)
T ss_dssp EEETTSEEEEEECCSSSCCCCEEEECCSS-----CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred EEeCCCcEEEEEeecCCCcceeEeecCCC-----ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence 36778999884443333355667778888 999999999 5899999999999999999876
Q ss_pred --ceeeecccCCCceeEEEEccC---CCEEEEEEccccc
Q 041215 66 --QRLKAMSRCGQPIPCSTFNTD---GSIFAYSVCYDWS 99 (136)
Q Consensus 66 --~~~~~~~~h~~~v~~v~~sp~---~~~l~s~~~dd~~ 99 (136)
.....+.+|..+|.+++|+|+ +.++++++.|...
T Consensus 193 ~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I 231 (753)
T 3jro_A 193 TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence 455677889999999999999 8999998887643
No 120
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.11 E-value=5.6e-10 Score=85.61 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=62.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.||+|.+ ||..+++....+.+|.. .|.+++| ++..+++++.|+.|++||+.++..+..+.+|...|.++
T Consensus 215 ~s~dg~i~~--wd~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 285 (445)
T 2ovr_B 215 GSRDATLRV--WDIETGQCLHVLMGHVA-----AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285 (445)
T ss_dssp EETTSEEEE--EESSSCCEEEEEECCSS-----CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE
T ss_pred EeCCCEEEE--EECCCCcEEEEEcCCcc-----cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEE
Confidence 556777766 56666677777777777 7777777 56677777777777777777777777777777777777
Q ss_pred EEccCCCEEEEEEcccccc
Q 041215 82 TFNTDGSIFAYSVCYDWSK 100 (136)
Q Consensus 82 ~~sp~~~~l~s~~~dd~~~ 100 (136)
+| ++.++++++.|....
T Consensus 286 ~~--~~~~l~~~~~d~~i~ 302 (445)
T 2ovr_B 286 QF--DGIHVVSGSLDTSIR 302 (445)
T ss_dssp EE--CSSEEEEEETTSCEE
T ss_pred EE--CCCEEEEEeCCCeEE
Confidence 77 667777776665443
No 121
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.09 E-value=7.8e-10 Score=84.28 Aligned_cols=101 Identities=10% Similarity=0.087 Sum_probs=75.2
Q ss_pred CCceeceEEEEEeeCC-CCcceeEEEeeeC----C-C--CccceeEEE--EeCCCCEEEEEcCCCcEEEEeCCCcceeee
Q 041215 1 VGSIEGRVGVHHLDDS-QQSKNFTFKCHRD----G-S--EIYSVNSLN--FHPIHHTFATAGSDGAFNFWDKDSKQRLKA 70 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~-~~~~~~~l~~h~~----~-~--~~~~v~~l~--~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~ 70 (136)
+|+.||.|.+|.++.. .++....+..|.- + . +...+.++. +++++.+|++++.|+.|++||+.++..+..
T Consensus 128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 3678999999665422 3444444333210 0 0 222566766 568889999999999999999999999988
Q ss_pred ccc--CCCceeEEEEccCCCEEEEEEccccccc
Q 041215 71 MSR--CGQPIPCSTFNTDGSIFAYSVCYDWSKG 101 (136)
Q Consensus 71 ~~~--h~~~v~~v~~sp~~~~l~s~~~dd~~~~ 101 (136)
+.. |.+.|.+++|+|++.++++|+.|.....
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 240 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDI 240 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 887 8899999999999999999988875443
No 122
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.06 E-value=6e-10 Score=86.57 Aligned_cols=85 Identities=13% Similarity=0.041 Sum_probs=67.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-------
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC------- 74 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h------- 74 (136)
|+.||+|.+ ||.+++........|.. .|.+++|+|++.+|++++.|+.|++||.. +.....+..|
T Consensus 168 ~s~Dg~v~i--wD~~~~~~~~~~~~~~~-----~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 168 CLADGSIAV--LQVTETVKVCATLPSTV-----AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp EETTSCEEE--EEESSSEEEEEEECGGG-----CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred EECCCeEEE--EEcCCCcceeeccCCCC-----ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence 678999988 66676666656667788 99999999999999999999999999998 4444444333
Q ss_pred CCceeEEEEccCCCEEEEEE
Q 041215 75 GQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~ 94 (136)
...|.+++|++++.++++.+
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEE
T ss_pred ceeEEEEEEecCceEEEEEc
Confidence 23899999999888776544
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.05 E-value=1.7e-09 Score=81.06 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=71.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
++.||.|.+ ||..+++....+..| . .+.+++|+|++..+ ++++.++.|++||+.+++.+..+..+. .+.+
T Consensus 8 ~~~d~~v~v--~d~~~~~~~~~~~~~-~-----~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~ 78 (391)
T 1l0q_A 8 NSESDNISV--IDVTSNKVTATIPVG-S-----NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQG 78 (391)
T ss_dssp ETTTTEEEE--EETTTTEEEEEEECS-S-----SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred cCCCCEEEE--EECCCCeEEEEeecC-C-----CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccc
Confidence 567888887 788888888887754 4 67999999999865 777789999999999998888876654 8999
Q ss_pred EEEccCCCEEEEEEcc
Q 041215 81 STFNTDGSIFAYSVCY 96 (136)
Q Consensus 81 v~~sp~~~~l~s~~~d 96 (136)
++|+|+++.++.++.+
T Consensus 79 ~~~spdg~~l~~~~~~ 94 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMA 94 (391)
T ss_dssp EEECTTSSEEEEEETT
T ss_pred eEECCCCCEEEEEECC
Confidence 9999999988766554
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.05 E-value=1.1e-09 Score=83.52 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=69.6
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC---CCCEEEEEcCCCcEEEEeCCCcceeeecccCC---Cce
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP---IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG---QPI 78 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p---~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~---~~v 78 (136)
|+.|.+|.+. ..++.+..+..|.. .+..++|+| ++.+|++++.|++|++||+.++++++++.+|. ..+
T Consensus 156 d~~V~~~~~s-~dG~~~~s~~~~~~-----~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v 229 (356)
T 2w18_A 156 DQQVEVMTFA-EDGGGKENQFLMPP-----EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASV 229 (356)
T ss_dssp TCEEEEEEEC-TTSCEEEEEEECCC-----SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCC
T ss_pred CCcEEEEEEC-CCCceeeeeccCCC-----ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeee
Confidence 7888885542 34677788888988 899999999 67999999999999999999999999998654 467
Q ss_pred eEEEEccCCCEEEEEE
Q 041215 79 PCSTFNTDGSIFAYSV 94 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~ 94 (136)
.+++|+|++.++++++
T Consensus 230 ~~vafSpdG~~lvs~s 245 (356)
T 2w18_A 230 CHKAYSEMGLLFIVLS 245 (356)
T ss_dssp EEEEEEETTEEEEEEC
T ss_pred EEEEECCCCCEEEEec
Confidence 7889999999886544
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.99 E-value=1e-09 Score=83.27 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=72.5
Q ss_pred CceeceEEEEEeeCCCCccee-----EEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215 2 GSIEGRVGVHHLDDSQQSKNF-----TFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ 76 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~-----~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~ 76 (136)
++.|+.|.+ ||..+++... .+..|.. .|.+++|+|++.++++++.|+.|++||+.++..+..+..|..
T Consensus 140 ~~~~~~i~~--~d~~~g~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~ 212 (433)
T 3bws_A 140 LLEDEGMDV--LDINSGQTVRLSPPEKYKKKLG-----FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK 212 (433)
T ss_dssp BTTSSSEEE--EETTTCCEEEECCCHHHHTTCC-----EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred eCCCCeEEE--EECCCCeEeeecCcccccccCC-----ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence 455677776 7777776665 3345667 899999999999999999999999999999988888888999
Q ss_pred ceeEEEEccCCCEEEEEEc
Q 041215 77 PIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~ 95 (136)
.+.+++|+|++..+++++.
T Consensus 213 ~~~~~~~~~~~~~l~~~~~ 231 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNW 231 (433)
T ss_dssp SEEEEEEETTTTEEEEEET
T ss_pred CeeEEEEcCCCCEEEEEec
Confidence 9999999999998865554
No 126
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=98.93 E-value=2.6e-09 Score=86.20 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=65.2
Q ss_pred CCceeceEEEEEeeCCCCcc-------eeEE----EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--
Q 041215 1 VGSIEGRVGVHHLDDSQQSK-------NFTF----KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR-- 67 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~-------~~~l----~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~-- 67 (136)
+|+.||+|.+ ||..++.. +.++ .+|.. .|.+++|+|+| +++++.|+.|++||+..+..
T Consensus 146 sgs~DGtVkI--Wd~~~~~l~~~~~i~l~ti~~~~~gh~~-----~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~ 216 (588)
T 2j04_A 146 VGNEDGELQF--FSIRKNSENTPEFYFESSIRLSDAGSKD-----WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP 216 (588)
T ss_dssp EEETTSEEEE--EECCCCTTTCCCCEEEEEEECSCTTCCC-----CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC
T ss_pred EEcCCCEEEE--EECCCCccccccceeeeeeecccccccc-----cEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc
Confidence 3688999999 55555542 4666 34556 99999999999 78888999999999988763
Q ss_pred -eeec-ccCCCceeEEEEccCCCEEEEEE
Q 041215 68 -LKAM-SRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 68 -~~~~-~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
..++ .+|...|.+|+|+ +..+|+++
T Consensus 217 ~~~tL~~~h~~~V~svaFs--g~~LASa~ 243 (588)
T 2j04_A 217 VSRMIQNASRRKITDLKIV--DYKVVLTC 243 (588)
T ss_dssp CEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred ceeeecccccCcEEEEEEE--CCEEEEEe
Confidence 3456 4788999999999 68888875
No 127
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.91 E-value=1.6e-08 Score=71.86 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=67.6
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeeecccC-CCceeE
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKAMSRC-GQPIPC 80 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h-~~~v~~ 80 (136)
+.|++|.+ ||..+++.. .+..|.. .|.+++|+|++.+|++++ ++.|.+||+.+ +........+ ...+.+
T Consensus 19 ~~~~~i~~--~d~~~~~~~-~~~~~~~-----~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (297)
T 2ojh_A 19 SMRSSIEI--FNIRTRKMR-VVWQTPE-----LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNND 89 (297)
T ss_dssp CCCEEEEE--EETTTTEEE-EEEEESS-----CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred CcceeEEE--EeCCCCcee-eeccCCc-----ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccc
Confidence 45666765 787776655 4456888 999999999999988876 78999999998 8776666555 378899
Q ss_pred EEEccCCCEEEEEEc
Q 041215 81 STFNTDGSIFAYSVC 95 (136)
Q Consensus 81 v~~sp~~~~l~s~~~ 95 (136)
++|+|+++++++++.
T Consensus 90 ~~~spdg~~l~~~~~ 104 (297)
T 2ojh_A 90 HGISPDGALYAISDK 104 (297)
T ss_dssp CEECTTSSEEEEEEC
T ss_pred eEECCCCCEEEEEEe
Confidence 999999999998873
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.89 E-value=2e-08 Score=76.10 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=71.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
++.||.|.+ ||..+++....+..|.. .+.+++|+|++..+ ++++.++.|.+||+.++..+..+..+ ..+.+
T Consensus 187 ~~~d~~v~~--~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~ 258 (433)
T 3bws_A 187 QMQANAVHV--FDLKTLAYKATVDLTGK-----WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRG 258 (433)
T ss_dssp EGGGTEEEE--EETTTCCEEEEEECSSS-----SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEE
T ss_pred ECCCCEEEE--EECCCceEEEEEcCCCC-----CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceE
Confidence 456788877 78788888888888888 99999999999876 56667899999999998887777654 56999
Q ss_pred EEEccCCCEEEEEEc
Q 041215 81 STFNTDGSIFAYSVC 95 (136)
Q Consensus 81 v~~sp~~~~l~s~~~ 95 (136)
++|+|++..+++++.
T Consensus 259 ~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 259 LLLSKDGKELYIAQF 273 (433)
T ss_dssp EEECTTSSEEEEEEE
T ss_pred EEEcCCCCEEEEEEC
Confidence 999999998887763
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=98.84 E-value=5.1e-08 Score=74.92 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=64.8
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC---cEEEEeCCCcceeeecccCCCceeEEE
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG---AFNFWDKDSKQRLKAMSRCGQPIPCST 82 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~h~~~v~~v~ 82 (136)
+.|.+ ||.. +.....+..|.. .+.+++|+|+|+.|+.++.++ .|++||+.++... .+..|...+.+++
T Consensus 159 ~~i~i--~d~~-g~~~~~l~~~~~-----~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~ 229 (415)
T 2hqs_A 159 YELRV--SDYD-GYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPA 229 (415)
T ss_dssp EEEEE--EETT-SCSCEEEEEESS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEE
T ss_pred ceEEE--EcCC-CCCCEEEeCCCC-----cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEE
Confidence 45544 7765 345677788988 999999999999999998875 8999999988764 5667788999999
Q ss_pred EccCCCEEEEEE
Q 041215 83 FNTDGSIFAYSV 94 (136)
Q Consensus 83 ~sp~~~~l~s~~ 94 (136)
|+|+++.|+..+
T Consensus 230 ~spdg~~la~~~ 241 (415)
T 2hqs_A 230 FSPDGSKLAFAL 241 (415)
T ss_dssp ECTTSSEEEEEE
T ss_pred EcCCCCEEEEEE
Confidence 999999888443
No 130
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.79 E-value=9.2e-08 Score=71.51 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=67.3
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC 80 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 80 (136)
++.|+.|.+ ||..+++....+.. .. .+.+++|+|++..| ++++.++.|++||+.+++.+..+..+ ..+.+
T Consensus 50 ~~~d~~i~v--~d~~~~~~~~~~~~-~~-----~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~ 120 (391)
T 1l0q_A 50 NAHSNDVSI--IDTATNNVIATVPA-GS-----SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLG 120 (391)
T ss_dssp EGGGTEEEE--EETTTTEEEEEEEC-SS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEE
T ss_pred CCCCCeEEE--EECCCCeEEEEEEC-CC-----CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcce
Confidence 346788877 88888887777653 44 78999999999866 56667799999999998887777554 57899
Q ss_pred EEEccCCCEE-EEEEccc
Q 041215 81 STFNTDGSIF-AYSVCYD 97 (136)
Q Consensus 81 v~~sp~~~~l-~s~~~dd 97 (136)
++|+|+++.+ ++++.+.
T Consensus 121 ~~~s~dg~~l~~~~~~~~ 138 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDK 138 (391)
T ss_dssp EEECTTSSEEEEEETTTT
T ss_pred EEECCCCCEEEEEeCCCC
Confidence 9999999977 4544444
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=98.74 E-value=1.6e-07 Score=72.08 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=64.8
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEE-EEcCCCc--EEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFA-TAGSDGA--FNFWDKDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~-s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
.+++||..+++.. .+..|.. .+.+++|+|+|+.|+ +++.++. |.+||+.++.. ..+..|...+.+++|+|
T Consensus 204 ~i~~~d~~tg~~~-~l~~~~~-----~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp 276 (415)
T 2hqs_A 204 ALVIQTLANGAVR-QVASFPR-----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFP 276 (415)
T ss_dssp EEEEEETTTCCEE-EEECCSS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECT
T ss_pred EEEEEECCCCcEE-EeecCCC-----cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECC
Confidence 4455888777664 4566777 899999999998666 7766654 99999988765 56778888999999999
Q ss_pred CCCEEEEEEccc
Q 041215 86 DGSIFAYSVCYD 97 (136)
Q Consensus 86 ~~~~l~s~~~dd 97 (136)
+++.|++++.++
T Consensus 277 dg~~l~~~s~~~ 288 (415)
T 2hqs_A 277 DSQNLAFTSDQA 288 (415)
T ss_dssp TSSEEEEEECTT
T ss_pred CCCEEEEEECCC
Confidence 999888877643
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.70 E-value=1.7e-07 Score=74.84 Aligned_cols=86 Identities=8% Similarity=0.100 Sum_probs=71.1
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC--CCcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK--DSKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~--~~~~~~~~~~~h~~~v~ 79 (136)
++.|++|.+ ||..+++...++... . .+..++|+|++++|++++.|+.|.+||+ .++.++.++. +...+.
T Consensus 155 ~~~d~~V~v--~D~~t~~~~~~i~~g-~-----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~ 225 (543)
T 1nir_A 155 LRDAGQIAL--VDGDSKKIVKVIDTG-Y-----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEAR 225 (543)
T ss_dssp EGGGTEEEE--EETTTCCEEEEEECS-T-----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEE
T ss_pred EcCCCeEEE--EECCCceEEEEEecC-c-----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcc
Confidence 356778877 788888888887632 2 5789999999999999999999999999 7888888876 456779
Q ss_pred EEEEcc----CCCEEEEEEcc
Q 041215 80 CSTFNT----DGSIFAYSVCY 96 (136)
Q Consensus 80 ~v~~sp----~~~~l~s~~~d 96 (136)
+++|+| ++++++++...
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEE
T ss_pred eEEeCCCcCCCCCEEEEEEcc
Confidence 999999 99998887653
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.70 E-value=9e-08 Score=67.94 Aligned_cols=89 Identities=7% Similarity=0.087 Sum_probs=68.2
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCC-CcceeeecccCCCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKD-SKQRLKAMSRCGQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~-~~~~~~~~~~h~~~v~ 79 (136)
++.|+.+.+|.++..++.. ..+..+.. .+.+++|+|++..|+.++ .++.+.+|++. .+..+..+..|...+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVE-TRLTHGEG-----RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCE-EECCCSSS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEE
T ss_pred ECCCCceEEEEEECCCCcc-eEcccCCC-----ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccC
Confidence 3457788888877765443 34455666 899999999998766555 58889999876 4556677777888899
Q ss_pred EEEEccCCCEEEEEEcc
Q 041215 80 CSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~d 96 (136)
+++|+|++++|++++.+
T Consensus 221 ~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp EEEECTTSSEEEEEEEE
T ss_pred CeEECCCCCEEEEEEcC
Confidence 99999999998887765
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.63 E-value=2.8e-07 Score=67.38 Aligned_cols=85 Identities=6% Similarity=-0.048 Sum_probs=65.8
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCCCcce-eeecccCCCceeE
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKDSKQR-LKAMSRCGQPIPC 80 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~~~~~-~~~~~~h~~~v~~ 80 (136)
+.++.|.+ ||..+++....+..+.. .+ .++|+|++++++.++ .++.|.+||..++.. ...+..+..+..+
T Consensus 17 ~~~~~v~~--~d~~~~~~~~~~~~~~~-----~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 17 QHLRRISF--FSTDTLEILNQITLGYD-----FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp GGGTEEEE--EETTTCCEEEEEECCCC-----EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred cCCCeEEE--EeCcccceeeeEEccCC-----cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 45677776 88888888777775555 66 999999998555554 488999999999887 6677677677666
Q ss_pred EEEccCCCEEEEEEc
Q 041215 81 STFNTDGSIFAYSVC 95 (136)
Q Consensus 81 v~~sp~~~~l~s~~~ 95 (136)
++|+|++++++++..
T Consensus 89 ~~~s~dg~~l~~~~~ 103 (331)
T 3u4y_A 89 VDITPDDQFAVTVTG 103 (331)
T ss_dssp EEECTTSSEEEECCC
T ss_pred eEECCCCCEEEEecC
Confidence 999999998884433
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.56 E-value=4e-07 Score=77.18 Aligned_cols=82 Identities=11% Similarity=0.001 Sum_probs=67.7
Q ss_pred EEE-EeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC
Q 041215 9 GVH-HLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG 87 (136)
Q Consensus 9 ~i~-~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 87 (136)
.+| .+|..+++.. .+..|.. .+..++|+|+|+.|+.++.++.|++||+.++.....+..|...+.+++|+|++
T Consensus 359 ~l~~~~d~~~~~~~-~l~~~~~-----~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG 432 (1045)
T 1k32_A 359 DFLGIYDYRTGKAE-KFEENLG-----NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS 432 (1045)
T ss_dssp EEEEEEETTTCCEE-ECCCCCC-----SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred ceEEEEECCCCCce-EecCCcc-----ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC
Confidence 456 6777655443 3335666 89999999999999999999999999999988777777888999999999999
Q ss_pred CEEEEEEcc
Q 041215 88 SIFAYSVCY 96 (136)
Q Consensus 88 ~~l~s~~~d 96 (136)
++|++++.+
T Consensus 433 ~~la~~~~~ 441 (1045)
T 1k32_A 433 RFIAYGFPL 441 (1045)
T ss_dssp CEEEEEEEE
T ss_pred CeEEEEecC
Confidence 999887664
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.55 E-value=3.8e-07 Score=77.34 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=71.3
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC----------cEEEEeCCCcceeeecc
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG----------AFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg----------~v~vwd~~~~~~~~~~~ 72 (136)
+.++.+. +||..+++....+..|.. .+..++|+|+|++|+.++.++ .|++||+.++. +..+.
T Consensus 397 ~~~~~v~--~~d~~tg~~~~~~~~~~~-----~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~ 468 (1045)
T 1k32_A 397 NDRFEIM--TVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT 468 (1045)
T ss_dssp ETTSEEE--EEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS
T ss_pred CCCCeEE--EEECCCCceEEeccCCCC-----CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee
Confidence 3445554 488888888777777888 899999999999888876644 89999999876 67777
Q ss_pred cCCCceeEEEEccCCCEEEEEEcccc
Q 041215 73 RCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 73 ~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
.|...+.+++|+|+|+.+++++.++.
T Consensus 469 ~~~~~~~~~~~spdG~~l~~~s~~~~ 494 (1045)
T 1k32_A 469 TENSHDYAPAFDADSKNLYYLSYRSL 494 (1045)
T ss_dssp CSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred CCCcccCCceEcCCCCEEEEEecccC
Confidence 88888999999999999998876544
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.55 E-value=1.1e-07 Score=76.66 Aligned_cols=89 Identities=8% Similarity=0.073 Sum_probs=65.7
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---------CcEEEEeCCCcce--eeec
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---------GAFNFWDKDSKQR--LKAM 71 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---------g~v~vwd~~~~~~--~~~~ 71 (136)
+.||+|.+ ||..+++....+..|.. ....|..++|+|+|++|+.++.+ +.+.+||+.++.. +...
T Consensus 34 ~~dg~i~~--~d~~~g~~~~~~~~~~~--~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 109 (723)
T 1xfd_A 34 EQKGTVRL--WNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP 109 (723)
T ss_dssp CSSSCEEE--BCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT
T ss_pred eCCCCEEE--EECCCCcEEEEeccccc--cccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCC
Confidence 45776655 88888877777665543 00138999999999998888764 6788999998865 2222
Q ss_pred ccCCCceeEEEEccCCCEEEEEEc
Q 041215 72 SRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 72 ~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
..|...+.+++|||+|+.|+.++.
T Consensus 110 ~~~~~~~~~~~~SPdG~~la~~~~ 133 (723)
T 1xfd_A 110 EVSNAKLQYAGWGPKGQQLIFIFE 133 (723)
T ss_dssp TCCSCCCSBCCBCSSTTCEEEEET
T ss_pred ccccccccccEECCCCCEEEEEEC
Confidence 334456899999999999998765
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.55 E-value=3.4e-07 Score=74.20 Aligned_cols=88 Identities=6% Similarity=0.118 Sum_probs=65.3
Q ss_pred eEEEEEeeCCCCcceeEEEeeeCC----------CC---------ccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc-
Q 041215 7 RVGVHHLDDSQQSKNFTFKCHRDG----------SE---------IYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ- 66 (136)
Q Consensus 7 ~v~i~~~d~~~~~~~~~l~~h~~~----------~~---------~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~- 66 (136)
...|+.||..+++....+..+... .. ...+..++|+|+|+.|+.++. +.|.+||+.++.
T Consensus 63 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~ 141 (741)
T 2ecf_A 63 QLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK 141 (741)
T ss_dssp EEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCST
T ss_pred ccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCc
Confidence 345566888887766665543320 00 013789999999998888876 899999998873
Q ss_pred -eeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 67 -RLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 67 -~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
....+..|...+.+++|||+|++|+.++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~SPDG~~la~~~~ 171 (741)
T 2ecf_A 142 AAVRQLTHGEGFATDAKLSPKGGFVSFIRG 171 (741)
T ss_dssp TSCCBCCCSSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEcccCCcccccccCCCCCCEEEEEeC
Confidence 34567778888999999999999998764
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.53 E-value=9.7e-07 Score=64.22 Aligned_cols=85 Identities=6% Similarity=-0.040 Sum_probs=60.4
Q ss_pred ceeceEEEEEeeCCCC--cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC-CcEEEEeCC--Ccc--eeeecccCC
Q 041215 3 SIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD-GAFNFWDKD--SKQ--RLKAMSRCG 75 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~--~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d-g~v~vwd~~--~~~--~~~~~~~h~ 75 (136)
+.|+.|.+|.++. ++ ..... ..+.. .+.+++|+|++++|++++.+ +.|.+|++. ++. .+..+..+
T Consensus 12 ~~~~~v~~~~~~~-~~~~~~~~~-~~~~~-----~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 83 (343)
T 1ri6_A 12 PESQQIHVWNLNH-EGALTLTQV-VDVPG-----QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP- 83 (343)
T ss_dssp GGGTEEEEEEECT-TSCEEEEEE-EECSS-----CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred CCCCeEEEEEECC-CCcEEEeee-EecCC-----CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-
Confidence 5688888865543 23 22233 34566 78899999999977777776 899999987 444 23344444
Q ss_pred CceeEEEEccCCCEEEEEEc
Q 041215 76 QPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~ 95 (136)
..+.+++|+|+++++++++.
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~ 103 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSY 103 (343)
T ss_dssp SCCSEEEECTTSSEEEEEET
T ss_pred CCCcEEEEcCCCCEEEEEec
Confidence 37899999999998776655
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.49 E-value=4e-07 Score=72.17 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=67.3
Q ss_pred EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC--cEEEEeCCCcceeeecccCCCceeEEE---
Q 041215 8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG--AFNFWDKDSKQRLKAMSRCGQPIPCST--- 82 (136)
Q Consensus 8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~--- 82 (136)
..|+.+|..+++.. .+..|.. .+..++|+|||+.|++++.++ .|.+||+.++... .+..|...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~-----~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEG-----SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSC-----EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred eEEEEEcCCCCCce-EeecCCC-----ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 44677887766654 5667777 889999999999999888888 8999999988877 7777877787777
Q ss_pred -----EccCCCEEEEEEccc
Q 041215 83 -----FNTDGSIFAYSVCYD 97 (136)
Q Consensus 83 -----~sp~~~~l~s~~~dd 97 (136)
|+|+|.+++++..+.
T Consensus 248 ~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp EEEEEECTTSCEEEEEEETT
T ss_pred ccceeEcCCCcEEEEEEcCC
Confidence 999998888776655
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.44 E-value=1.8e-06 Score=62.98 Aligned_cols=81 Identities=5% Similarity=0.011 Sum_probs=60.0
Q ss_pred EEEEeeCCCCcc-eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC---cEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215 9 GVHHLDDSQQSK-NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG---AFNFWDKDSKQRLKAMSRCGQPIPCSTFN 84 (136)
Q Consensus 9 ~i~~~d~~~~~~-~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 84 (136)
.++.||..+++. ...+..+.. +..+++|+|++++|++...++ .|.+||..++..+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVVAIQEGQS-----SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEEEEEECSS-----CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEEecccCCC-----CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 345588887777 666666655 555599999999888555553 8999999998887776544 456999999
Q ss_pred cCCCEEEEEEc
Q 041215 85 TDGSIFAYSVC 95 (136)
Q Consensus 85 p~~~~l~s~~~ 95 (136)
|++++++++..
T Consensus 137 pdg~~l~~~~~ 147 (331)
T 3u4y_A 137 PNGNGLILIDR 147 (331)
T ss_dssp TTSSCEEEEEE
T ss_pred CCCCEEEEEec
Confidence 99985555444
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.44 E-value=8.9e-07 Score=65.36 Aligned_cols=87 Identities=10% Similarity=0.167 Sum_probs=63.8
Q ss_pred eeceEEEEEeeCCCCccee-EEEeeeCCCCccceeEEEEeCCCCEEEEEcC---CCcEEEEeCCCcc--eeeecccCCCc
Q 041215 4 IEGRVGVHHLDDSQQSKNF-TFKCHRDGSEIYSVNSLNFHPIHHTFATAGS---DGAFNFWDKDSKQ--RLKAMSRCGQP 77 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~-~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~---dg~v~vwd~~~~~--~~~~~~~h~~~ 77 (136)
.++.+.+|.+|..+++... ....+.. .+..++|+|+++ |++++. ++.|.+|++.++. .+..+..+...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~-----~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~ 87 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQ-----NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP 87 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECS-----CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCC
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccC-----CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCC
Confidence 4567888899987776543 3334556 778899999999 544443 5789999997664 34444556778
Q ss_pred eeEEEEccCCCEEEEEEcc
Q 041215 78 IPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 78 v~~v~~sp~~~~l~s~~~d 96 (136)
+..++|+|++++|++++..
T Consensus 88 p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 88 PAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp CSEEEEETTTTEEEEEETT
T ss_pred CEEEEECCCCCEEEEEeCC
Confidence 8999999999988877643
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.43 E-value=3.8e-06 Score=61.96 Aligned_cols=93 Identities=5% Similarity=-0.000 Sum_probs=60.7
Q ss_pred eeceEEEEEeeCCCCcce--eEEEeeeC-CCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCC-c--ceeeecccCCC
Q 041215 4 IEGRVGVHHLDDSQQSKN--FTFKCHRD-GSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDS-K--QRLKAMSRCGQ 76 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~--~~l~~h~~-~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~-~--~~~~~~~~h~~ 76 (136)
.++.+.+|.++..+++.. ..+..... ......+..++|+|+|++| ++...++.|.+|++.. + ..+..+..+..
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~ 286 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD 286 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC
Confidence 456677766665444322 22222211 0001247889999999866 5666688999999873 2 44556666667
Q ss_pred ceeEEEEccCCCEEEEEEcc
Q 041215 77 PIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~d 96 (136)
.+..++|+|++++|+++..+
T Consensus 287 ~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 287 FPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp CCCEEEECTTSSEEEEEETT
T ss_pred CcCeEEECCCCCEEEEEEcC
Confidence 78999999999988877665
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.43 E-value=2.4e-06 Score=62.53 Aligned_cols=82 Identities=10% Similarity=0.022 Sum_probs=65.1
Q ss_pred EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc----CCCceeEEEEcc
Q 041215 10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR----CGQPIPCSTFNT 85 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~v~~sp 85 (136)
++.||..+++....+..+.. .+.+++|+|++..|+.++.++.|.+||..++..+..+.. +...+..++|+|
T Consensus 166 i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 166 IWVVDGGNIKLKTAIQNTGK-----MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp EEEEETTTTEEEEEECCCCT-----TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred EEEEcCCCCceEEEecCCCC-----ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 34488888877777664555 678999999999999999999999999999887766654 455678899999
Q ss_pred CCCEEEEEEcc
Q 041215 86 DGSIFAYSVCY 96 (136)
Q Consensus 86 ~~~~l~s~~~d 96 (136)
++..++.+..+
T Consensus 241 dg~~l~~~~~~ 251 (353)
T 3vgz_A 241 ARQRAFITDSK 251 (353)
T ss_dssp TTTEEEEEESS
T ss_pred CCCEEEEEeCC
Confidence 99977666544
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.42 E-value=1.9e-06 Score=62.96 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=64.8
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCE-EEEEcCCCcEEEEeCCCcceeeecccCC------
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHT-FATAGSDGAFNFWDKDSKQRLKAMSRCG------ 75 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~-l~s~~~dg~v~vwd~~~~~~~~~~~~h~------ 75 (136)
+.++.|.+ ||..+++....+..+.. +.+..++|+|+++. +++...++.|.+||+.++..+..+....
T Consensus 18 ~~~~~v~~--~d~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~ 91 (349)
T 1jmx_B 18 NYPNNLHV--VDVASDTVYKSCVMPDK----FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 91 (349)
T ss_dssp ETTTEEEE--EETTTTEEEEEEECSSC----CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred CCCCeEEE--EECCCCcEEEEEecCCC----CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccc
Confidence 45666765 88888887777764431 14678999999975 5566678899999999988776664332
Q ss_pred CceeEEEEccCCCEEEEEEcc
Q 041215 76 QPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~d 96 (136)
..+.+++|+|++++++++..+
T Consensus 92 ~~~~~~~~spdg~~l~~~~~~ 112 (349)
T 1jmx_B 92 RSMYSFAISPDGKEVYATVNP 112 (349)
T ss_dssp ECSSCEEECTTSSEEEEEEEE
T ss_pred ccccceEECCCCCEEEEEccc
Confidence 237899999999998887743
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.40 E-value=2.5e-06 Score=62.49 Aligned_cols=91 Identities=10% Similarity=0.052 Sum_probs=67.1
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCC----CCccceeEEEEeCCCCEEEEEc--CCCcEEEEeCCCcceeeecccCCCce
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDG----SEIYSVNSLNFHPIHHTFATAG--SDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~----~~~~~v~~l~~~p~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
++.|. .||..+++....+..+... .....+.+++|+|++..++.++ .++.|.+||..++..+..+..+...+
T Consensus 110 ~~~v~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 110 NSAVT--AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp TTEEE--EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred CCEEE--EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence 45554 4888888887777654330 0011268899999998666655 47889999999998888876566678
Q ss_pred eEEEEccCCCEEEEEEccc
Q 041215 79 PCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd 97 (136)
.+++|+|++..++++..++
T Consensus 188 ~~~~~s~dg~~l~~~~~~~ 206 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNADG 206 (353)
T ss_dssp CCCEEETTTTEEEEECTTS
T ss_pred ceEEECCCCCEEEEEcCCC
Confidence 9999999999888776544
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.35 E-value=1.3e-05 Score=58.08 Aligned_cols=80 Identities=14% Similarity=0.073 Sum_probs=61.2
Q ss_pred EEEEeeCCCCcce-eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC
Q 041215 9 GVHHLDDSQQSKN-FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG 87 (136)
Q Consensus 9 ~i~~~d~~~~~~~-~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 87 (136)
.++.+|..+++.. ..+..+.. .+.+++|+|++.+++.+ ++.|.+||+.+++.+..+..+ ..+.+++|+|++
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg 291 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDV-----FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDG 291 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSS-----CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTS
T ss_pred ceEEEeCCCCCceEeecCCCCC-----ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCC
Confidence 4566888877654 23344555 77899999999988888 689999999998877766543 567899999999
Q ss_pred CEEEEEEcc
Q 041215 88 SIFAYSVCY 96 (136)
Q Consensus 88 ~~l~s~~~d 96 (136)
+++++++.+
T Consensus 292 ~~l~~~~~~ 300 (337)
T 1pby_B 292 STVWLGGAL 300 (337)
T ss_dssp CEEEEESBS
T ss_pred CEEEEEcCC
Confidence 988877443
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.33 E-value=6e-07 Score=72.68 Aligned_cols=85 Identities=9% Similarity=0.162 Sum_probs=62.4
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC---------CCcEEEEeCCCccee--eecc
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS---------DGAFNFWDKDSKQRL--KAMS 72 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~---------dg~v~vwd~~~~~~~--~~~~ 72 (136)
.||+|.+ ||..+++....+..+.. ....+.+++|+|||++|+.++. ++.|++||+.++..+ ..+
T Consensus 34 ~d~~i~~--~~~~~g~~~~~~~~~~~--~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l- 108 (719)
T 1z68_A 34 ADNNIVL--YNIETGQSYTILSNRTM--KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL- 108 (719)
T ss_dssp TTSCEEE--EESSSCCEEEEECHHHH--HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-
T ss_pred CCCCEEE--EEcCCCcEEEEEccccc--cccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-
Confidence 3666654 88888877666654432 0013889999999998888876 688999999988753 222
Q ss_pred cCCCceeEEEEccCCCEEEEEEc
Q 041215 73 RCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 73 ~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
...+.+++|||+|+.|+.+..
T Consensus 109 --~~~~~~~~~SPDG~~la~~~~ 129 (719)
T 1z68_A 109 --PRPIQYLCWSPVGSKLAYVYQ 129 (719)
T ss_dssp --CSSBCCEEECSSTTCEEEEET
T ss_pred --CcccccceECCCCCEEEEEEC
Confidence 256899999999999998753
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.30 E-value=3.1e-06 Score=68.56 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=60.5
Q ss_pred EEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc----------
Q 041215 10 VHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP---------- 77 (136)
Q Consensus 10 i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~---------- 77 (136)
+++||..++. ....+..+.. .+..++|+|+|+.|+.++. +.|.+||+.++........+...
T Consensus 131 i~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~ 204 (741)
T 2ecf_A 131 LYLYDLKQEGKAAVRQLTHGEG-----FATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVA 204 (741)
T ss_dssp EEEEESSSCSTTSCCBCCCSSS-----CEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHH
T ss_pred EEEEECCCCCcceEEEcccCCc-----ccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceee
Confidence 4557777662 3444556667 8999999999998888874 58999999987665444433332
Q ss_pred ------eeEEEEccCCCEEEEEEccc
Q 041215 78 ------IPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 78 ------v~~v~~sp~~~~l~s~~~dd 97 (136)
+.+++|||+|+.|++++.+.
T Consensus 205 ~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 205 DEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp HHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred eeccccccceEECCCCCEEEEEEEcC
Confidence 47899999999999886654
No 150
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.25 E-value=8.3e-06 Score=65.01 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=65.7
Q ss_pred CceeceEEEEEeeC--CCCcceeEEEeeeCCCCccceeEEEEeC----CCCEEEEEcC-CCcEEEEeCCCcceeeecccC
Q 041215 2 GSIEGRVGVHHLDD--SQQSKNFTFKCHRDGSEIYSVNSLNFHP----IHHTFATAGS-DGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 2 gs~dG~v~i~~~d~--~~~~~~~~l~~h~~~~~~~~v~~l~~~p----~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~h 74 (136)
++.|++|.+ ||. .+++...++. +.. .+..++|+| ++++|++++. ++.|.+||..+++++..+..+
T Consensus 196 ~~~d~~V~v--~D~~~~t~~~~~~i~-~g~-----~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 196 IGRDARIDM--IDLWAKEPTKVAEIK-IGI-----EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp EETTSEEEE--EETTSSSCEEEEEEE-CCS-----EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred ECCCCeEEE--EECcCCCCcEEEEEe-cCC-----CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence 456777877 776 6777777776 344 678999999 9998888875 799999999999888777542
Q ss_pred -----------CCceeEEEEccCCCEEEEEEc
Q 041215 75 -----------GQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 75 -----------~~~v~~v~~sp~~~~l~s~~~ 95 (136)
...+..+.++|++..++.+..
T Consensus 268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 237889999998776554433
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.25 E-value=5.2e-06 Score=60.18 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=61.2
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc------------CCCcEEEEeCCCcceeeecc
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG------------SDGAFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~ 72 (136)
++.|.+ ||..+++....+.......+...+..++|+|++..|+.++ .++.|.+||..++..+..+.
T Consensus 55 ~~~v~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 132 (337)
T 1pby_B 55 SESLVK--IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132 (337)
T ss_dssp TTEEEE--EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred CCeEEE--EECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence 455554 8888777776665321000011567899999998888775 57899999999887776664
Q ss_pred cCCCceeEEEEccCCCEEEEE
Q 041215 73 RCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 73 ~h~~~v~~v~~sp~~~~l~s~ 93 (136)
. ...+.+++|+|++++++++
T Consensus 133 ~-~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 133 A-PRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp C-CSSCCCEEECTTSSCEEEE
T ss_pred C-CCCcceeEECCCCCEEEEe
Confidence 4 4568899999999977776
No 152
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.24 E-value=9.1e-06 Score=59.00 Aligned_cols=61 Identities=5% Similarity=-0.035 Sum_probs=45.7
Q ss_pred ceeEEEEeCCCCEEE-EEcCCCcEEEEeCC--C--cceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 35 SVNSLNFHPIHHTFA-TAGSDGAFNFWDKD--S--KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~-s~~~dg~v~vwd~~--~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
.+..++|+|++.+|+ +...++.|.+|++. + ...+..+..+.. +.+++|+|+++++++++.+
T Consensus 232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~ 297 (343)
T 1ri6_A 232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQK 297 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTT
T ss_pred CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCC
Confidence 456899999997665 66678999999998 2 234444544444 8999999999988877644
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.23 E-value=1.4e-06 Score=70.30 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=57.4
Q ss_pred EEeeCCCCcceeEEE---eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc----------
Q 041215 11 HHLDDSQQSKNFTFK---CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP---------- 77 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~---~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~---------- 77 (136)
++||..+++. ..+. .|.. .+..++|+|+|+.|+.++. +.|++||+.++........+...
T Consensus 94 ~~~d~~~~~~-~~l~~~~~~~~-----~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 94 VLSKIPHGDP-QSLDPPEVSNA-----KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp EEEESSSCCC-EECCCTTCCSC-----CCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred EEEECCCCce-EeccCCccccc-----cccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence 4477766654 2332 2333 4788999999998888876 78999999988766554443332
Q ss_pred --------eeEEEEccCCCEEEEEEccc
Q 041215 78 --------IPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 78 --------v~~v~~sp~~~~l~s~~~dd 97 (136)
+.+++|||+|+.|++++.++
T Consensus 167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~ 194 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDGTRLAYAAIND 194 (723)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred EEEEeccCcceEEECCCCCEEEEEEECC
Confidence 37899999999999887654
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.18 E-value=6.5e-06 Score=67.36 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=65.0
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---------CcEEEEeCCCcceeeecccCC
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---------GAFNFWDKDSKQRLKAMSRCG 75 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~h~ 75 (136)
||+|.+ ||..+++....+..|...........++|+|||+.|+.++.+ +.+.+||+.++.. ..+..+.
T Consensus 35 ~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~-~~l~~~~ 111 (740)
T 4a5s_A 35 ENNILV--FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIP 111 (740)
T ss_dssp TTEEEE--EETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCC
T ss_pred CCcEEE--EECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE-EEcccCC
Confidence 666655 888888877777666531111122448999999988888765 5677999999875 4566777
Q ss_pred CceeEEEEccCCCEEEEEEcc
Q 041215 76 QPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~d 96 (136)
..+..++|||||+.||.+...
T Consensus 112 ~~~~~~~~SPdG~~la~~~~~ 132 (740)
T 4a5s_A 112 NNTQWVTWSPVGHKLAYVWNN 132 (740)
T ss_dssp TTEEEEEECSSTTCEEEEETT
T ss_pred CcceeeEECCCCCEEEEEECC
Confidence 889999999999999987543
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.18 E-value=3.7e-06 Score=67.78 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=61.1
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-----cceeeecccCCCc-
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-----KQRLKAMSRCGQP- 77 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~h~~~- 77 (136)
.++.+.+ ||..+++.. .+..+.. .+..++|+|+|+.|+.+ .++.|.+|++.+ +........+...
T Consensus 99 ~~~~i~~--~d~~~~~~~-~l~~~~~-----~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 99 TQGGLVG--FDMLARKVT-YLFDTNE-----ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp ETTEEEE--EETTTTEEE-EEECCTT-----CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred ECCEEEE--EECCCCceE-EccCCcc-----cccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 3455554 777766543 3344566 78889999999988885 678999999988 7665544433332
Q ss_pred -------------eeEEEEccCCCEEEEEEcc
Q 041215 78 -------------IPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 78 -------------v~~v~~sp~~~~l~s~~~d 96 (136)
+.+++|+|++++|++++.|
T Consensus 170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d 201 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMD 201 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECTTSSEEEEEEEE
T ss_pred EcccchhhhhcCCCceEEECCCCCEEEEEEEC
Confidence 5899999999999988743
No 156
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.16 E-value=1e-05 Score=60.99 Aligned_cols=82 Identities=17% Similarity=0.067 Sum_probs=63.8
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC----------CCcEEEEeCCCcceeeecccC
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS----------DGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~h 74 (136)
|+.|.+ ||..+++....+..... + .++|+|++++|+.++. ++.|.+||..+++.+.++...
T Consensus 30 d~~v~v--~D~~t~~~~~~i~~g~~-----p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~ 100 (361)
T 2oiz_A 30 ESRVHV--YDYTNGKFLGMVPTAFN-----G--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP 100 (361)
T ss_dssp GCEEEE--EETTTCCEEEEEECCEE-----E--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC
T ss_pred cCeEEE--EECCCCeEEEEecCCCC-----C--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC
Confidence 556655 88888888877776555 5 8999999998888762 567999999988887776542
Q ss_pred ------CCceeEEEEccCCCEEEEEEc
Q 041215 75 ------GQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 75 ------~~~v~~v~~sp~~~~l~s~~~ 95 (136)
......++|+|+|++|.++..
T Consensus 101 ~~~~~~g~~p~~i~~spdg~~l~v~n~ 127 (361)
T 2oiz_A 101 PKRVQGLNYDGLFRQTTDGKFIVLQNA 127 (361)
T ss_dssp TTBCCBCCCGGGEEECTTSSEEEEEEE
T ss_pred ccccccCCCcceEEECCCCCEEEEECC
Confidence 345788999999998887653
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.16 E-value=2.3e-05 Score=58.11 Aligned_cols=62 Identities=6% Similarity=0.085 Sum_probs=46.2
Q ss_pred ceeEEEEeCCCCEEEEEcC--CCcEEEEeCC--Ccc--eeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFATAGS--DGAFNFWDKD--SKQ--RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~--~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+..++|+|+|++|+.++. ++.|.+|++. ++. .+..+.. ...+.+++|+|++++|+++..++
T Consensus 260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 4579999999998766555 4889999985 344 3344444 56788999999999888877543
No 158
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.14 E-value=1.7e-05 Score=59.76 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=61.1
Q ss_pred EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc--ceeeecccCCCceeEEEEcc
Q 041215 8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK--QRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~h~~~v~~v~~sp 85 (136)
..++.||..+.+.+.++..+ .+.+++|+|++++|++++. +.|.+||..++ +.+.++..+....+.++++|
T Consensus 286 ~~v~viD~~t~~~v~~i~~~-------~p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPGR-------DALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp SEEEEEETTTTEEEEEEECT-------TCCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred ceEEEEECCCCcEEEEEecC-------CeeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence 45566999888888777643 2689999999999998887 99999999999 88888767778889999999
Q ss_pred CCC
Q 041215 86 DGS 88 (136)
Q Consensus 86 ~~~ 88 (136)
+|.
T Consensus 358 ~G~ 360 (361)
T 2oiz_A 358 VGG 360 (361)
T ss_dssp CSC
T ss_pred CCC
Confidence 985
No 159
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.12 E-value=1.6e-05 Score=61.32 Aligned_cols=81 Identities=15% Similarity=0.006 Sum_probs=61.1
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF 83 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 83 (136)
.+|.|.+ ||..+.........|.. ++..+.+.+. .++.+..||.|.+||+.++.... +...|.|++|
T Consensus 104 ~~~~l~v--~dv~sl~~~~~~~~~~~-----~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W 170 (388)
T 1xip_A 104 TRNALYS--LDLEELSEFRTVTSFEK-----PVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV 170 (388)
T ss_dssp ESSEEEE--EESSSTTCEEEEEECSS-----CEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred cCCcEEE--EEchhhhccCccceeec-----ceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence 5676666 88776666667777877 8888777543 38888999999999999876543 4468999999
Q ss_pred ccCCCEEEEEEccccc
Q 041215 84 NTDGSIFAYSVCYDWS 99 (136)
Q Consensus 84 sp~~~~l~s~~~dd~~ 99 (136)
||.| ++.|..|+-.
T Consensus 171 SpkG--~~vg~~dg~i 184 (388)
T 1xip_A 171 TNSQ--LAVLLKDRSF 184 (388)
T ss_dssp CSSE--EEEEETTSCE
T ss_pred cCCc--eEEEEcCCcE
Confidence 9999 4556666543
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.10 E-value=1.1e-05 Score=65.15 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=56.9
Q ss_pred eceEEEEEeeCCCCcce--eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-ccCCCce---
Q 041215 5 EGRVGVHHLDDSQQSKN--FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPI--- 78 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~--~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v--- 78 (136)
++.+. +||..+++.. ..+ .. .+..++|+|+|+.|+.+. ++.|++|++.++...... .++...|
T Consensus 89 ~~~i~--~~d~~~g~~~~~~~l---~~-----~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g 157 (719)
T 1z68_A 89 TATYY--IYDLSNGEFVRGNEL---PR-----PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG 157 (719)
T ss_dssp EEEEE--EEETTTTEECCSSCC---CS-----SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred ceEEE--EEECCCCccccceec---Cc-----ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence 45554 4777666542 111 24 678899999999888875 679999999887654322 2222222
Q ss_pred --------------eEEEEccCCCEEEEEEccc
Q 041215 79 --------------PCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 79 --------------~~v~~sp~~~~l~s~~~dd 97 (136)
.+++|||||+.|++++.++
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~ 190 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFND 190 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred cccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence 5899999999999987664
No 161
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.06 E-value=3.6e-05 Score=62.03 Aligned_cols=90 Identities=13% Similarity=0.181 Sum_probs=62.9
Q ss_pred EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC--CCCEEEEEcCCCcEEEEeCC-CcceeeecccCCCceeE-EEE
Q 041215 8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP--IHHTFATAGSDGAFNFWDKD-SKQRLKAMSRCGQPIPC-STF 83 (136)
Q Consensus 8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p--~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~~-v~~ 83 (136)
..++.||..+++....+...........+..++|+| ++.++++++.++.+++|++. ++..+..+..+...+.+ ++|
T Consensus 284 ~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~ 363 (706)
T 2z3z_A 284 CKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF 363 (706)
T ss_dssp EEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred eEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence 455668888774433333222201111246789999 99999999999999999876 56667788788777876 799
Q ss_pred ccCCCEEEEEEccc
Q 041215 84 NTDGSIFAYSVCYD 97 (136)
Q Consensus 84 sp~~~~l~s~~~dd 97 (136)
+|+++.|+.++.++
T Consensus 364 spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 364 DPKGTRLYFESTEA 377 (706)
T ss_dssp CTTSSEEEEEESSS
T ss_pred cCCCCEEEEEecCC
Confidence 99999877665553
No 162
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.05 E-value=4.6e-05 Score=55.57 Aligned_cols=84 Identities=10% Similarity=0.128 Sum_probs=68.5
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeee-CCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-CCcee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHR-DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-GQPIP 79 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~-~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~ 79 (136)
++.|+.|.+ ||..+++.+..+..+. . .+.++.+.|+|++|++ .++.|..||. +++.+.++..+ ...+.
T Consensus 11 ~~~~~~v~~--~d~~tG~~~w~~~~~~~~-----~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 11 GSGWNKIAI--INKDTKEIVWEYPLEKGW-----ECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CTTCSEEEE--EETTTTEEEEEEECCTTC-----CCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred eCCCCEEEE--EECCCCeEEEEeCCCccC-----CCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 566777766 8988999999988765 4 6789999999998883 4677999998 78888888765 35788
Q ss_pred EEEEccCCCEEEEEEc
Q 041215 80 CSTFNTDGSIFAYSVC 95 (136)
Q Consensus 80 ~v~~sp~~~~l~s~~~ 95 (136)
++.+.++|.++++.+.
T Consensus 81 ~~~~~~dG~~lv~~~~ 96 (276)
T 3no2_A 81 TARILPDGNALVAWCG 96 (276)
T ss_dssp EEEECTTSCEEEEEES
T ss_pred ccEECCCCCEEEEecC
Confidence 9999999999997665
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.04 E-value=8.5e-05 Score=55.50 Aligned_cols=86 Identities=10% Similarity=0.090 Sum_probs=58.1
Q ss_pred eeceEEEEEeeCCCCcceeEEEe----eeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCC-Cccee--eecc--c
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKC----HRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKD-SKQRL--KAMS--R 73 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~----h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~-~~~~~--~~~~--~ 73 (136)
.+|++.+|.++. .+.....+.. +.. .+.+++|+|+|++|++++. ++.|.+|++. ++... ..+. .
T Consensus 117 ~~g~v~v~~~~~-~g~~~~~~~~~~~~~~~-----~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 190 (365)
T 1jof_A 117 FAGYGNVFSVSE-TGKLEKNVQNYEYQENT-----GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD 190 (365)
T ss_dssp SCCEEEEEEECT-TCCEEEEEEEEECCTTC-----CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred CCceEEEEccCC-CCcCcceEeeEEeCCCC-----cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC
Confidence 467777754432 2443333332 234 6889999999987776654 5789999998 66542 2332 2
Q ss_pred CCCceeEEEEccCCCEEEEEEc
Q 041215 74 CGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 74 h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
|...+..++|+|++++++++..
T Consensus 191 ~g~~p~~~~~spdg~~l~v~~~ 212 (365)
T 1jof_A 191 PGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCEeEECCCCCEEEEEEC
Confidence 4567899999999998877654
No 164
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.00 E-value=6.7e-06 Score=65.08 Aligned_cols=84 Identities=10% Similarity=0.071 Sum_probs=64.9
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEE--------EeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLN--------FHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~--------~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h 74 (136)
+.+|...|+.||..+++.. .+..|.. .+..++ |+|+|.++++++.++.+++|++ +.... ..
T Consensus 213 ~~~~~~~i~~~d~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~ 281 (582)
T 3o4h_A 213 ETAREARLVTVDPRDGSVE-DLELPSK-----DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP 281 (582)
T ss_dssp ECSSCEEEEEECTTTCCEE-ECCCSCS-----HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC
T ss_pred cCCCeeEEEEEcCCCCcEE-EccCCCc-----ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC
Confidence 3456556777998887776 6666766 666666 9999999999999999999999 65543 33
Q ss_pred CCceeEEEEccCCCEEEEEEcccc
Q 041215 75 GQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
.+.+.+++|+ +++++++++.+..
T Consensus 282 ~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 282 QGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp SSEEEEEEEE-TTEEEEEEEETTE
T ss_pred CCceEEEEec-CCEEEEEEcCCCC
Confidence 4678999999 9998888777653
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.00 E-value=1.3e-05 Score=58.49 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=56.2
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeC-CCCccceeEEEEeCCCCEEEEEcCC------------CcEEEEeCCCccee---
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRD-GSEIYSVNSLNFHPIHHTFATAGSD------------GAFNFWDKDSKQRL--- 68 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~-~~~~~~v~~l~~~p~~~~l~s~~~d------------g~v~vwd~~~~~~~--- 68 (136)
++.|.+ ||..+++....+..... ......+..++|+|++++|++++.+ +.|.+||+.++...
T Consensus 64 ~~~i~~--~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 64 YGDIYG--IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp TTEEEE--EETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCcEEE--EeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 455544 88877777666653211 0001147899999999988888765 89999999875433
Q ss_pred eecccCCCceeEEEEccCCCEEE
Q 041215 69 KAMSRCGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 69 ~~~~~h~~~v~~v~~sp~~~~l~ 91 (136)
..+. +...+.+++|+|++++++
T Consensus 142 ~~~~-~~~~~~~~~~s~dg~l~~ 163 (349)
T 1jmx_B 142 RTFP-MPRQVYLMRAADDGSLYV 163 (349)
T ss_dssp EEEE-CCSSCCCEEECTTSCEEE
T ss_pred eecc-CCCcccceeECCCCcEEE
Confidence 2332 334688999999999444
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=97.99 E-value=2.9e-05 Score=62.10 Aligned_cols=87 Identities=10% Similarity=0.025 Sum_probs=60.5
Q ss_pred ceEEEEEeeCCC------CcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCC--------CcEEEEeCC-Cc---c
Q 041215 6 GRVGVHHLDDSQ------QSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSD--------GAFNFWDKD-SK---Q 66 (136)
Q Consensus 6 G~v~i~~~d~~~------~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~d--------g~v~vwd~~-~~---~ 66 (136)
+...|+.+|..+ +. ...+. .+.. .+..++|+|||+.|+.++.+ ..|.+||+. ++ .
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~-----~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSA-VRELSDDAHR-----FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGG-SEESSCSCSS-----EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred ceeEEEEEECCCCccccCCc-eeEEEecCCC-----cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 345667788766 33 33444 4445 67889999999988877644 369999998 56 3
Q ss_pred eeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215 67 RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 67 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~ 98 (136)
.......+...+..++|+|+|++++++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~ 264 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW 264 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence 33334445788999999999997776655543
No 167
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.98 E-value=2.2e-05 Score=60.55 Aligned_cols=78 Identities=13% Similarity=0.031 Sum_probs=59.8
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeec------c-
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAM------S- 72 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~------~- 72 (136)
++.||.+.+ ||...+.... +.. .|.|++|+|+| ++.+..||.+++|+...+.+ ..++ .
T Consensus 142 ~~~dG~L~v--~dl~~~~~~~----~~~-----~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~ 208 (388)
T 1xip_A 142 LNSVNDLSA--LDLRTKSTKQ----LAQ-----NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEE 208 (388)
T ss_dssp EETTSEEEE--EETTTCCEEE----EEE-----SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHT
T ss_pred EECCCCEEE--EEccCCcccc----ccC-----CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccccc
Confidence 467888887 6666554432 455 89999999999 67788899999998877664 4445 2
Q ss_pred --cCCCceeEEEEccCCCEEEE
Q 041215 73 --RCGQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 73 --~h~~~v~~v~~sp~~~~l~s 92 (136)
+|...|.+|+|.+++.++++
T Consensus 209 ~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 209 LPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SCTTTSEEEEEEESSSSEEEEE
T ss_pred ccCCCeeEEEEEEecCCeEEEE
Confidence 36789999999999988775
No 168
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.95 E-value=0.00011 Score=59.08 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=65.8
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC--CcceeeecccCCCceeEE
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD--SKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~h~~~v~~v 81 (136)
.++.|.+ +|..+++.+..+.. .. .+..+.|+|++++++.++.++.|.+||+. ++..+.++... .....+
T Consensus 175 ~~~~V~v--iD~~t~~v~~~i~~-g~-----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~i 245 (567)
T 1qks_A 175 DAGQIAL--IDGSTYEIKTVLDT-GY-----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSI 245 (567)
T ss_dssp TTTEEEE--EETTTCCEEEEEEC-SS-----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEE
T ss_pred CCCeEEE--EECCCCeEEEEEeC-CC-----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCcee
Confidence 3566655 89988888888763 33 56799999999999999999999999995 77777777554 346799
Q ss_pred EEc----cCCCEEEEEEcc
Q 041215 82 TFN----TDGSIFAYSVCY 96 (136)
Q Consensus 82 ~~s----p~~~~l~s~~~d 96 (136)
+|+ |+|++++++..+
T Consensus 246 a~s~~~~pDGk~l~v~n~~ 264 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYW 264 (567)
T ss_dssp EECCSTTCTTTEEEEEEEE
T ss_pred EEccccCCCCCEEEEEEcc
Confidence 999 699988877554
No 169
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.93 E-value=0.00018 Score=53.24 Aligned_cols=86 Identities=8% Similarity=-0.066 Sum_probs=60.3
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC----CcEEEEeCCC--cce--eeecccC
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD----GAFNFWDKDS--KQR--LKAMSRC 74 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d----g~v~vwd~~~--~~~--~~~~~~h 74 (136)
+.++.|.+|.+|..+++.......+.. .+..++|+|++++|++++.+ +.|.+|++.. +.. +.....+
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~-----~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~ 98 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDAEVA-----NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM 98 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEEECS-----CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS
T ss_pred CCCCCEEEEEEeCCCCCEEEeecccCC-----CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC
Confidence 346778888888877765433322556 78889999999988888875 7899998765 432 3334445
Q ss_pred CCceeEEEEccCCCEEEEEEc
Q 041215 75 GQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 75 ~~~v~~v~~sp~~~~l~s~~~ 95 (136)
......+++ ++++++++..
T Consensus 99 ~~~p~~~~~--dg~~l~~~~~ 117 (361)
T 3scy_A 99 GADPCYLTT--NGKNIVTANY 117 (361)
T ss_dssp SSCEEEEEE--CSSEEEEEET
T ss_pred CCCcEEEEE--CCCEEEEEEC
Confidence 566777888 8887776654
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=97.92 E-value=2.1e-05 Score=58.52 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=59.8
Q ss_pred eeCCCCcceeEEEeeeCCCCccceeE-----EEEeCCCCEEEEEcC-CC--cEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215 13 LDDSQQSKNFTFKCHRDGSEIYSVNS-----LNFHPIHHTFATAGS-DG--AFNFWDKDSKQRLKAMSRCGQPIPCSTFN 84 (136)
Q Consensus 13 ~d~~~~~~~~~l~~h~~~~~~~~v~~-----l~~~p~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 84 (136)
.|..++.....+..+.. .... .+|+|+|+.|+..+. ++ .|.+||+.++........+...+..++|+
T Consensus 15 ~~~~~g~~~~~lt~~~~-----~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s 89 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDV-----TCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS 89 (388)
T ss_dssp ECTTTCCEEEECSCTTS-----CEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC
T ss_pred ecCCCCcceEEecCCcc-----cccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc
Confidence 56677777777776665 4444 789999987777776 66 38888998887766666666666678899
Q ss_pred cCCCEEEEEEcc
Q 041215 85 TDGSIFAYSVCY 96 (136)
Q Consensus 85 p~~~~l~s~~~d 96 (136)
|+++.|+.+..+
T Consensus 90 pdg~~l~~~~~~ 101 (388)
T 3pe7_A 90 PDDDALFYVKDG 101 (388)
T ss_dssp TTSSEEEEEETT
T ss_pred CCCCEEEEEeCC
Confidence 999999987754
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.88 E-value=0.00014 Score=53.33 Aligned_cols=78 Identities=9% Similarity=0.026 Sum_probs=53.9
Q ss_pred eEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---C--cEEEEeCCCcceeeecccCCCceeEE
Q 041215 7 RVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---G--AFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 7 ~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g--~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
.-.||.+|..+++.. .+ . .+..++|+|+|+.|+..+.+ + .|.+|++.++........+ . +..+
T Consensus 42 ~~~l~~~d~~~~~~~-~l----~-----~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~ 109 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI----E-----NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSL 109 (347)
T ss_dssp EEEEEEEETTTCCEE-EE----E-----SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEE
T ss_pred cceEEEEeCCCCceE-Ec----c-----cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccce
Confidence 344566777665532 23 4 77889999999887776643 3 3777888877654433333 4 9999
Q ss_pred EEccCCCEEEEEEcc
Q 041215 82 TFNTDGSIFAYSVCY 96 (136)
Q Consensus 82 ~~sp~~~~l~s~~~d 96 (136)
+|+|+++.|+.++.+
T Consensus 110 ~wspdg~~l~~~~~~ 124 (347)
T 2gop_A 110 EWNEDSRKLLIVGFK 124 (347)
T ss_dssp EECTTSSEEEEEEEC
T ss_pred eECCCCCEEEEEEcc
Confidence 999999988877643
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.85 E-value=0.00016 Score=52.73 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=54.8
Q ss_pred eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
...+..+.. .+.+++|+|++.+++++..++.|.+||..++........+...+.++++++++.++++...+
T Consensus 37 ~~~~~~~~~-----~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~ 107 (333)
T 2dg1_A 37 WLEISKKGL-----QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGD 107 (333)
T ss_dssp EEEEESSCC-----CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTT
T ss_pred eEEEeccCc-----cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCC
Confidence 344444545 67899999999988888888999999998876554443556789999999999988865443
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=97.84 E-value=6.7e-05 Score=61.37 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=58.4
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee-cccCCCce---------
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA-MSRCGQPI--------- 78 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~h~~~v--------- 78 (136)
.+++||..+++.. .+..+.. .+...+|+|+|+.|+.+ .++.|++|++.++..... ..++...+
T Consensus 93 ~~~~~d~~~~~~~-~l~~~~~-----~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 93 SYDIYDLNKRQLI-TEERIPN-----NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp EEEEEETTTTEEC-CSSCCCT-----TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EEEEEECCCCcEE-EcccCCC-----cceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 4456888776543 3455666 88999999999988877 467899999988765432 22222222
Q ss_pred --------eEEEEccCCCEEEEEEcccc
Q 041215 79 --------PCSTFNTDGSIFAYSVCYDW 98 (136)
Q Consensus 79 --------~~v~~sp~~~~l~s~~~dd~ 98 (136)
..+.|||||+.||.++.|+-
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~ 193 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDT 193 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred cchhcCCCcceEECCCCCEEEEEEEccc
Confidence 35899999999998876543
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=97.84 E-value=5.1e-05 Score=56.37 Aligned_cols=84 Identities=12% Similarity=-0.036 Sum_probs=60.9
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEE--
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCST-- 82 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~-- 82 (136)
+|...||.+|..+++.......+.. .+..+.|+|+++.|+.++.++.|.+||+.++.....+..+...+....
T Consensus 57 ~g~~~l~~~d~~~g~~~~lt~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~ 131 (388)
T 3pe7_A 57 DGPWNYYLLDLNTQVATQLTEGRGD-----NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWV 131 (388)
T ss_dssp TSSCEEEEEETTTCEEEECCCSSCB-----CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEE
T ss_pred CCCceEEEEeCCCCceEEeeeCCCC-----CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhccccccee
Confidence 5666677788877666555444444 445678999999999999888999999999877655555555554444
Q ss_pred EccCCCEEEEE
Q 041215 83 FNTDGSIFAYS 93 (136)
Q Consensus 83 ~sp~~~~l~s~ 93 (136)
+++++.+++..
T Consensus 132 ~~~dg~~l~~~ 142 (388)
T 3pe7_A 132 ANSDCTKLVGI 142 (388)
T ss_dssp ECTTSSEEEEE
T ss_pred ECCCCCeeccc
Confidence 48999988743
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.75 E-value=0.00046 Score=50.32 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=56.3
Q ss_pred EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC----CcEEEEeCCCcceeeecc--cCCCceeEEEEc
Q 041215 11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD----GAFNFWDKDSKQRLKAMS--RCGQPIPCSTFN 84 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~--~h~~~v~~v~~s 84 (136)
+.||..+++....+..+.. .+.+++++|++.++++...+ +.|.+||..++.....+. .+...+++++++
T Consensus 69 ~~~d~~~~~~~~~~~~~~~-----~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d 143 (333)
T 2dg1_A 69 FKINPETKEIKRPFVSHKA-----NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD 143 (333)
T ss_dssp EEECTTTCCEEEEEECSSS-----SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred EEEeCCCCcEEEEeeCCCC-----CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC
Confidence 4467666554443333445 78999999999988887766 679999988765432222 244678999999
Q ss_pred cCCCEEEEEE
Q 041215 85 TDGSIFAYSV 94 (136)
Q Consensus 85 p~~~~l~s~~ 94 (136)
|++.++++..
T Consensus 144 ~~g~l~v~~~ 153 (333)
T 2dg1_A 144 SKGGFYFTDF 153 (333)
T ss_dssp TTSCEEEEEC
T ss_pred CCCCEEEEec
Confidence 9999888654
No 176
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=97.74 E-value=0.00021 Score=53.40 Aligned_cols=61 Identities=3% Similarity=-0.168 Sum_probs=44.7
Q ss_pred eeEEE-EeCCCCEEEEEcCC-C-----cEEEEeCC-Ccceee---ecccCCCceeEEEEcc---CCCEEEEEEcc
Q 041215 36 VNSLN-FHPIHHTFATAGSD-G-----AFNFWDKD-SKQRLK---AMSRCGQPIPCSTFNT---DGSIFAYSVCY 96 (136)
Q Consensus 36 v~~l~-~~p~~~~l~s~~~d-g-----~v~vwd~~-~~~~~~---~~~~h~~~v~~v~~sp---~~~~l~s~~~d 96 (136)
+..++ |+|+|++|++++.+ . .|.+|++. ++.... ....+...+..++|+| ++++|+++..+
T Consensus 256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 67899 99999887766543 2 79999986 565432 1333455678899999 89999887654
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.72 E-value=0.00013 Score=59.28 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=48.1
Q ss_pred eEEEEeCCCCEEEEEcCCCc-------------EEEEeCCCcc----eeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 37 NSLNFHPIHHTFATAGSDGA-------------FNFWDKDSKQ----RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 37 ~~l~~~p~~~~l~s~~~dg~-------------v~vwd~~~~~----~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
..++|+|+|+.|+.++.+.. |++|++.++. .+.....+...+..+.|+|+|++++.++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 248 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG 248 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC
Confidence 67899999998888887665 9999998765 3344445556889999999999888776554
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.65 E-value=0.00052 Score=49.42 Aligned_cols=80 Identities=11% Similarity=-0.009 Sum_probs=57.9
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC----CCceeE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC----GQPIPC 80 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h----~~~v~~ 80 (136)
++.| +.||..++ ...+..+.. .+.+++++|++.++++...++.|.+||..++......... ...++.
T Consensus 49 ~~~i--~~~~~~~~--~~~~~~~~~-----~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 119 (296)
T 3e5z_A 49 QNRT--WAWSDDGQ--LSPEMHPSH-----HQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPND 119 (296)
T ss_dssp GTEE--EEEETTSC--EEEEESSCS-----SEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCC
T ss_pred CCEE--EEEECCCC--eEEEECCCC-----CcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCC
Confidence 4444 44777665 555555566 7899999999999888877788999999777654322211 245678
Q ss_pred EEEccCCCEEEEE
Q 041215 81 STFNTDGSIFAYS 93 (136)
Q Consensus 81 v~~sp~~~~l~s~ 93 (136)
++++|+|+++++.
T Consensus 120 i~~d~~G~l~vtd 132 (296)
T 3e5z_A 120 VCLAPDGSLWFSD 132 (296)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEECCCCCEEEEC
Confidence 9999999998874
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.63 E-value=0.00043 Score=50.61 Aligned_cols=80 Identities=13% Similarity=0.194 Sum_probs=55.1
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---------------------------CcEE
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---------------------------GAFN 58 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---------------------------g~v~ 58 (136)
+...||.+|..+++....... . .+..+.|+|+++.|+.++.+ ..|.
T Consensus 83 ~~~~l~~~~~~~g~~~~l~~~--~-----~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (347)
T 2gop_A 83 KVSEIWVADLETLSSKKILEA--K-----NIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW 155 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEE--S-----EEEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred CcceEEEEECCCCceEEEEcC--C-----CccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence 455677787766554433321 2 27889999999877766532 4688
Q ss_pred EEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 59 FWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 59 vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
+||+.++..+..+.. . .+..++|+|++ +++++..
T Consensus 156 ~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 156 IFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp EEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred EEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEec
Confidence 999988776445544 3 78899999999 7776643
No 180
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.63 E-value=0.00024 Score=54.29 Aligned_cols=78 Identities=8% Similarity=-0.145 Sum_probs=61.7
Q ss_pred EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC-----
Q 041215 10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC----- 74 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h----- 74 (136)
+..+|..+++.+.++..-.. + .+.++|+++.++.+. .++.|.+||..+++.+.++...
T Consensus 48 vsvID~~t~~v~~~i~vG~~-----P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 48 NWVSCAGCGVTLGHSLGAFL-----S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEETTTTEEEEEEEECTT-----C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred EEEEECCCCeEEEEEeCCCC-----C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence 34489999999988876555 6 799999997766665 3678999999999998887543
Q ss_pred --CCceeEEEEccCCCEEEEEE
Q 041215 75 --GQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 75 --~~~v~~v~~sp~~~~l~s~~ 94 (136)
......++|+|+|+++..+.
T Consensus 121 ~~g~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 121 SVGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEE
T ss_pred ccCCCcceEEEcCCCCEEEEEc
Confidence 13467899999999877764
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.62 E-value=0.00081 Score=48.00 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=45.3
Q ss_pred ceeEEEEeCCCCEEEEEcCCC-cEEEEeCCCcceeeecccCC--CceeEEEEccCCCEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDG-AFNFWDKDSKQRLKAMSRCG--QPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~l~s 92 (136)
.+..+++++++.++++...++ .|.+|+. ++..+..+..+. ..+.+++++|++.++++
T Consensus 208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 208 YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred CCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE
Confidence 678999999999998888776 9999995 455666665543 34779999999988776
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=97.61 E-value=0.0005 Score=54.89 Aligned_cols=83 Identities=7% Similarity=0.016 Sum_probs=55.4
Q ss_pred EEEEEeeCC-CC---cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC--cEEEEeCCCcceeeecccCCCc----
Q 041215 8 VGVHHLDDS-QQ---SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG--AFNFWDKDSKQRLKAMSRCGQP---- 77 (136)
Q Consensus 8 v~i~~~d~~-~~---~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~---- 77 (136)
-.|+++|.. ++ +.......+.. .+..++|+|+|+++++++.++ .|.+||..++........+...
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~-----~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~ 291 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEE-----AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPL 291 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTB-----CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCC
T ss_pred cEEEEEEECCCCcccccEEeCCCCCc-----eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcc
Confidence 345667776 45 33333333456 889999999999888888888 5666666566554433333222
Q ss_pred ----eeEEEEccCCCEEEEEEc
Q 041215 78 ----IPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 78 ----v~~v~~sp~~~~l~s~~~ 95 (136)
+.+++|++++.+++++..
T Consensus 292 w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 292 WTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp CSTTCCSEEECTTSCEEEEEBS
T ss_pred ccccCceEeEeCCCEEEEEEEc
Confidence 568999999998887754
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.60 E-value=0.00078 Score=54.74 Aligned_cols=82 Identities=6% Similarity=-0.007 Sum_probs=56.9
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc----------------EEEEeCCCcc----ee
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA----------------FNFWDKDSKQ----RL 68 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~----------------v~vwd~~~~~----~~ 68 (136)
.|+.+|..+++...... ... .+..++|+|||+.|+.++.++. |++|++.++. .+
T Consensus 152 ~i~v~d~~tg~~~~~~~-~~~-----~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v 225 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVL-ERV-----KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC 225 (710)
T ss_dssp EEEEEETTTTEEEEEEE-EEE-----CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE
T ss_pred EEEEEECCCCCCCcccc-cCc-----ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE
Confidence 44557877776554322 222 4567999999988887777654 9999998765 22
Q ss_pred eecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 69 KAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 69 ~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
.+...+...+..+.|+|++++|+.++..
T Consensus 226 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 253 (710)
T 2xdw_A 226 AEFPDEPKWMGGAELSDDGRYVLLSIRE 253 (710)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred eccCCCCeEEEEEEEcCCCCEEEEEEEc
Confidence 3333355667899999999998877653
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.58 E-value=0.00087 Score=47.18 Aligned_cols=65 Identities=6% Similarity=-0.061 Sum_probs=48.8
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
.+.++++.++|.++++...++.|.+|+............+...+.++++++++.++++...++-.
T Consensus 193 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 193 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp SEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 67899999999888888888899999987654333222334678999999999988866555443
No 185
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.58 E-value=0.0011 Score=48.21 Aligned_cols=64 Identities=9% Similarity=0.041 Sum_probs=51.5
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc-cCCCE-EEEEEcccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN-TDGSI-FAYSVCYDW 98 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~-l~s~~~dd~ 98 (136)
.+..+++.++|+++++....+.|.+||..+++.+..+..+...+.+++|. |++.. +++...++.
T Consensus 200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~~ 265 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDGM 265 (297)
T ss_dssp EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTTC
T ss_pred CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcCC
Confidence 57889999999988888778889999999898888887777789999998 88764 455444443
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=97.54 E-value=0.00023 Score=52.47 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=56.7
Q ss_pred EEeeCCCCcceeEEEe--eeCCCCccceeEEEEeCCCCEEEEEc-------CCCcEEEEeCCCcceeeecc---cCCCce
Q 041215 11 HHLDDSQQSKNFTFKC--HRDGSEIYSVNSLNFHPIHHTFATAG-------SDGAFNFWDKDSKQRLKAMS---RCGQPI 78 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~~--h~~~~~~~~v~~l~~~p~~~~l~s~~-------~dg~v~vwd~~~~~~~~~~~---~h~~~v 78 (136)
..||..+++....+.. +.. .+..++++| +..+.+.+ .+..|++|+..++..+..+. .+...+
T Consensus 221 ~~~~~~~G~~~~~~~~~~~~~-----~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p 294 (329)
T 3fvz_A 221 QCFKTDTKEFVREIKHASFGR-----NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMP 294 (329)
T ss_dssp EEEETTTCCEEEEECCTTTTT-----CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSE
T ss_pred EEEECCCCcEEEEEeccccCC-----CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCe
Confidence 3377666776666642 333 677899999 44444433 34589999999998887763 566778
Q ss_pred eEEEEccCCCEEEEEEccc
Q 041215 79 PCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd 97 (136)
..|+++|+|.++++...++
T Consensus 295 ~~ia~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDAHTN 313 (329)
T ss_dssp EEEEECTTSEEEEEESSSC
T ss_pred eEEEECCCCCEEEEECCCC
Confidence 9999999997777654443
No 187
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.49 E-value=0.00049 Score=52.99 Aligned_cols=81 Identities=11% Similarity=-0.044 Sum_probs=61.1
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h 74 (136)
++.|.+ +|..+++.+.++..-.. + . +.++|++++++.++ .++.|.+||..+++.+.++...
T Consensus 58 ~~~V~V--iD~~t~~v~~~I~vG~~-----P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~ 128 (386)
T 3sjl_D 58 VTQQFV--IDGEAGRVIGMIDGGFL-----P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 128 (386)
T ss_dssp SEEEEE--EETTTTEEEEEEEECSS-----C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred CCEEEE--EECCCCeEEEEEECCCC-----C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECC
Confidence 455555 99999998888876554 5 4 99999998766654 3578999999999888776432
Q ss_pred -------CCceeEEEEccCCCEEEEEE
Q 041215 75 -------GQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 75 -------~~~v~~v~~sp~~~~l~s~~ 94 (136)
......++|+|+|+++..+.
T Consensus 129 ~g~r~~~g~~P~~~a~spDGk~lyVan 155 (386)
T 3sjl_D 129 DAPRFLVGTYPWMTSLTPDGKTLLFYQ 155 (386)
T ss_dssp TCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred CccccccCCCCceEEEcCCCCEEEEEE
Confidence 13567899999999777664
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.47 E-value=0.00035 Score=56.71 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=45.3
Q ss_pred ceeEEEEeCCCCEEE-----EEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFA-----TAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~-----s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+..++|+|+|++|+ .++.+..|++||+.++..+............++|+|+++.|+.++.+.
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~ 189 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPT 189 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecC
Confidence 688999999998877 444456899999999876411111111226899999999999877654
No 189
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=97.43 E-value=0.0019 Score=47.57 Aligned_cols=79 Identities=11% Similarity=-0.047 Sum_probs=56.9
Q ss_pred EEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc-eeeec---------ccCCCcee
Q 041215 11 HHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ-RLKAM---------SRCGQPIP 79 (136)
Q Consensus 11 ~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~-~~~~~---------~~h~~~v~ 79 (136)
..+|..+++....+. .+-. .+..++++|+++++++...++.|.+|+..... .+..+ ..+.....
T Consensus 72 ~~~d~~~g~~~~~~~~~~~~-----~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~ 146 (329)
T 3fvz_A 72 LVIDPNNAEILQSSGKNLFY-----LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT 146 (329)
T ss_dssp EEECTTTCCEEEEECTTTCS-----SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE
T ss_pred EEEECCCCeEEeccCCCccC-----CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc
Confidence 448877777655543 2223 67899999999999999889999999976432 34444 23445688
Q ss_pred EEEEcc-CCCEEEEEE
Q 041215 80 CSTFNT-DGSIFAYSV 94 (136)
Q Consensus 80 ~v~~sp-~~~~l~s~~ 94 (136)
.|+++| ++.++++.+
T Consensus 147 ~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 147 DVAVEPSTGAVFVSDG 162 (329)
T ss_dssp EEEECTTTCCEEEEEC
T ss_pred EEEEeCCCCeEEEEeC
Confidence 999999 788888654
No 190
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.41 E-value=0.0015 Score=46.85 Aligned_cols=61 Identities=7% Similarity=0.044 Sum_probs=48.9
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.+..+++.++|+++++...++.|.+||..++..+..+..+...+.+++|++++..|..+..
T Consensus 227 ~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence 5788999999998888877888999999877766666666678999999999994444443
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.40 E-value=0.0016 Score=49.39 Aligned_cols=79 Identities=10% Similarity=-0.084 Sum_probs=57.4
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC----
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC---- 74 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h---- 74 (136)
.+..+|..+++....+..-.. + .+.++|++++|+.+. .++.|.+||..+.+.+.++...
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~-----p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFL-----P--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCCCeEEEEecCCCC-----C--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 445588888877766654323 3 999999998887775 3577999999988777665432
Q ss_pred ---CCceeEEEEccCCCEEEEEE
Q 041215 75 ---GQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 75 ---~~~v~~v~~sp~~~~l~s~~ 94 (136)
......++|+|+|+++..+.
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred cccCCCccceEECCCCCEEEEEe
Confidence 13346899999999888765
No 192
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.39 E-value=0.0024 Score=45.47 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=48.8
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--CCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--GQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+..++++|+++++++...++.|.+||.. +..+..+..+ ...+..|++++++.++++...++
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 57899999999988888888999999974 4555555433 36788999999999888765543
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.37 E-value=0.00063 Score=55.28 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=46.7
Q ss_pred ceeEEEEeCCCCEEEEEcCCC-----cEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDG-----AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+..++|+|+|++|+.+..++ .|++||+.++........+ ..+..++|+||++.|+.++.+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~ 192 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQ 192 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECC
Confidence 578899999998877665432 7999999998765532222 2367899999999998877654
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.35 E-value=0.00024 Score=52.57 Aligned_cols=85 Identities=15% Similarity=0.077 Sum_probs=53.7
Q ss_pred eeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-C--CcEEEEeCCCcceeeecccCCCceeEEEEccCCCE
Q 041215 13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-D--GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSI 89 (136)
Q Consensus 13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-d--g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 89 (136)
+|..++.....+..+....+...+..++|+|+|+.|+.... + ..|.+||+.++........+......+.|+|+++.
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~ 94 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERA 94 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSE
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCE
Confidence 56677776666654433000002677899999987665543 3 35888898887654333333223344889999999
Q ss_pred EEEEEccc
Q 041215 90 FAYSVCYD 97 (136)
Q Consensus 90 l~s~~~dd 97 (136)
|+.++.++
T Consensus 95 l~~~~~~~ 102 (396)
T 3c5m_A 95 FFYVKNEL 102 (396)
T ss_dssp EEEEETTT
T ss_pred EEEEEcCC
Confidence 98877664
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.32 E-value=0.0019 Score=46.38 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=55.3
Q ss_pred CcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215 18 QSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 18 ~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
+.....+..+.. ...+++|+|+++ +++++..++.|..|+..++ ...+..+...+.++++++++.++++..
T Consensus 17 ~~~~~~l~~~~~-----~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~ 87 (296)
T 3e5z_A 17 GAEARRLADGFT-----WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSH 87 (296)
T ss_dssp TCCCEEEECCCS-----SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEET
T ss_pred CCcEEEEecCCc-----cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEec
Confidence 344455555555 678999999998 7888888899999999877 556666778899999999999887653
No 196
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.26 E-value=0.0026 Score=46.94 Aligned_cols=83 Identities=12% Similarity=0.122 Sum_probs=54.8
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCC------CcEEEEeCCCcceeeecccC--CC
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSD------GAFNFWDKDSKQRLKAMSRC--GQ 76 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~h--~~ 76 (136)
+...++.+|..+++..... .+.. .+..+.|+| ++..|+..+.+ ..|.+|++..+... .+..+ ..
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~-----~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~ 238 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTA-----WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGE 238 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESS-----CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTE
T ss_pred CcceEEEEECCCCcEEeec-cCCc-----ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCc
Confidence 3445677888776655443 4556 788999999 77655544433 35888888765433 33233 23
Q ss_pred ceeEEEEccCCCEEEEEEc
Q 041215 77 PIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 77 ~v~~v~~sp~~~~l~s~~~ 95 (136)
.+..++|+|+++.|+.++.
T Consensus 239 ~~~~~~~spdg~~l~~~~~ 257 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSY 257 (396)
T ss_dssp EEEEEEECTTSSCEEEEEE
T ss_pred cccceEECCCCCEEEEEec
Confidence 5788999999997776644
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.23 E-value=0.0024 Score=47.13 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=60.7
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC----------CcEEEEeCCCcceeeecccC
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD----------GAFNFWDKDSKQRLKAMSRC 74 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d----------g~v~vwd~~~~~~~~~~~~h 74 (136)
++.|.+ +|..+++....+.. .. ....+.++|++++++++..+ +.|.+||..+++....+...
T Consensus 151 ~~~v~v--iD~~t~~~~~~i~~-g~-----~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~ 222 (328)
T 3dsm_A 151 QNRILK--IDTETDKVVDELTI-GI-----QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK 222 (328)
T ss_dssp CCEEEE--EETTTTEEEEEEEC-SS-----CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC
T ss_pred CCEEEE--EECCCCeEEEEEEc-CC-----CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC
Confidence 455655 88888777766653 23 45788999999887777655 78999999988777665432
Q ss_pred -CCceeEEEEccCCCEEEEEEc
Q 041215 75 -GQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 75 -~~~v~~v~~sp~~~~l~s~~~ 95 (136)
......++|+|++..+..+..
T Consensus 223 ~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 223 LGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp TTCCCEEEEECTTSCEEEEESS
T ss_pred CCCCceeEEEecCCCEEEEEcc
Confidence 346899999999887765543
No 198
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.15 E-value=0.0014 Score=51.08 Aligned_cols=80 Identities=11% Similarity=-0.069 Sum_probs=61.7
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC-
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC- 74 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h- 74 (136)
+.|.+ +|..+.+...++..-.. + .+.++|+++.|+.++ .++.|.++|..+++.+.++.-.
T Consensus 99 ~~VsV--ID~~t~~vv~~I~vG~~-----P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g 169 (426)
T 3c75_H 99 TQQFV--IDGSTGRILGMTDGGFL-----P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD 169 (426)
T ss_dssp EEEEE--EETTTTEEEEEEEECSS-----C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred CeEEE--EECCCCEEEEEEECCCC-----C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC
Confidence 55655 99999999988876555 5 899999998766665 3578999999999888776432
Q ss_pred ------CCceeEEEEccCCCEEEEEE
Q 041215 75 ------GQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 75 ------~~~v~~v~~sp~~~~l~s~~ 94 (136)
......+.|+|+++++..+.
T Consensus 170 ~~r~~~g~~P~~~~~spDGk~lyV~n 195 (426)
T 3c75_H 170 APRFLVGTYQWMNALTPDNKNLLFYQ 195 (426)
T ss_dssp CCCCCBSCCGGGSEECTTSSEEEEEE
T ss_pred ccccccCCCcceEEEcCCCCEEEEEe
Confidence 23457899999999877764
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.02 E-value=0.0067 Score=49.55 Aligned_cols=83 Identities=7% Similarity=-0.035 Sum_probs=54.4
Q ss_pred EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc--------------EEEEeCCCcc----eee
Q 041215 8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA--------------FNFWDKDSKQ----RLK 69 (136)
Q Consensus 8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~--------------v~vwd~~~~~----~~~ 69 (136)
..|+.+|..+++.... ..+.. .+..++|+|+ ..|+.++.+.. |.+|++.++. .+.
T Consensus 189 ~~i~v~dl~tg~~~~~-~~~~~-----~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~ 261 (741)
T 1yr2_A 189 RTVKFVGVADGKPLAD-ELKWV-----KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF 261 (741)
T ss_dssp EEEEEEETTTCCEEEE-EEEEE-----ESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE
T ss_pred EEEEEEECCCCCCCCc-cCCCc-----eeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe
Confidence 3456688777765432 22222 3467899999 87777766543 8889987654 233
Q ss_pred ecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 70 AMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 70 ~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
....+...+..+.|+|+|++++..+.+.
T Consensus 262 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 289 (741)
T 1yr2_A 262 ATPELPKRGHGASVSSDGRWVVITSSEG 289 (741)
T ss_dssp CCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred ccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence 3333434688999999999888776543
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.00 E-value=0.0084 Score=43.41 Aligned_cols=81 Identities=10% Similarity=0.033 Sum_probs=62.3
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC------CCce
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC------GQPI 78 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h------~~~v 78 (136)
++.|.. ||.. ++.+..+... . .+..+...++++.++++..++.|..+|..+|+.+.++... ...+
T Consensus 145 ~~~v~~--~d~~-G~~~w~~~~~-~-----~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~ 215 (276)
T 3no2_A 145 TSEVRE--IAPN-GQLLNSVKLS-G-----TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV 215 (276)
T ss_dssp TTEEEE--ECTT-SCEEEEEECS-S-----CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEE
T ss_pred CCEEEE--ECCC-CCEEEEEECC-C-----CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccc
Confidence 455544 8877 8888887754 3 4556778899999999888889999999999988777543 1347
Q ss_pred eEEEEccCCCEEEEEE
Q 041215 79 PCSTFNTDGSIFAYSV 94 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~ 94 (136)
..++..+++.++++..
T Consensus 216 ~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 216 AQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred ccceEcCCCCEEEEec
Confidence 8889999999988764
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.89 E-value=0.0069 Score=42.44 Aligned_cols=61 Identities=5% Similarity=0.010 Sum_probs=46.6
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.+.+++++++++++++...++.|.+|+............+...+..|++++++.++++...
T Consensus 151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~ 211 (270)
T 1rwi_B 151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN 211 (270)
T ss_dssp SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT
T ss_pred CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC
Confidence 5678999999998888877889999998776544333333467889999999987776543
No 202
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.75 E-value=0.0082 Score=49.14 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=60.6
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC-ceeEEEE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ-PIPCSTF 83 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~ 83 (136)
+|.+.. +|..+++....+..+. ++..-.+...+.+++.++.|+.|+.||..+|+.+.++....+ ...-+.|
T Consensus 454 ~g~l~A--~D~~tG~~~W~~~~~~------~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty 525 (689)
T 1yiq_A 454 SGKLIA--WDPVKQQAAWEVPYVT------IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTY 525 (689)
T ss_dssp EEEEEE--EETTTTEEEEEEEESS------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred ceeEEE--EECCCCCeEeEccCCC------CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEE
Confidence 466655 9999999998876543 334445666788999999999999999999999988765432 2345778
Q ss_pred ccCCCEE-EEEEc
Q 041215 84 NTDGSIF-AYSVC 95 (136)
Q Consensus 84 sp~~~~l-~s~~~ 95 (136)
..+|+++ +..++
T Consensus 526 ~~~G~qyv~~~~G 538 (689)
T 1yiq_A 526 SVDGEQYVTFMAG 538 (689)
T ss_dssp EETTEEEEEEEEC
T ss_pred EECCEEEEEEEec
Confidence 8888754 44433
No 203
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.71 E-value=0.035 Score=40.50 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=64.9
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC----------
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC---------- 74 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h---------- 74 (136)
||.-.++.+|+.+.+....+..-........++.+.|. +|..++..-.+..|.+.|..+++++..+...
T Consensus 143 dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~ 221 (262)
T 3nol_A 143 DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLP 221 (262)
T ss_dssp CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCC
T ss_pred CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccccc
Confidence 44545666999988888777654321111145667787 6777777767889999999999887766432
Q ss_pred --CCceeEEEEccCCC-EEEEEEccccccccccc
Q 041215 75 --GQPIPCSTFNTDGS-IFAYSVCYDWSKGAENH 105 (136)
Q Consensus 75 --~~~v~~v~~sp~~~-~l~s~~~dd~~~~~~~~ 105 (136)
.+..+.|+|+|++. ++++| -.|-+.++..
T Consensus 222 ~~~~vlNGIA~dp~~~~lfVTG--K~Wp~~~ev~ 253 (262)
T 3nol_A 222 SPIDVLNGIAWDKEHHRLFVTG--KLWPKVFEIT 253 (262)
T ss_dssp SSCCCEEEEEEETTTTEEEEEE--TTCSEEEEEE
T ss_pred CcCCceEEEEEcCCCCEEEEEC--CCCCceEEEE
Confidence 24568999999876 45544 3455545543
No 204
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.65 E-value=0.027 Score=41.37 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=46.0
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc-cCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN-TDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~~~ 95 (136)
.+..+++.++|.++++...++.|.+|+. ++..+..+..+...+.+++|+ +++..|..+..
T Consensus 231 ~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 231 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 5678999999988887766678999998 566667776666789999998 88775544433
No 205
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.63 E-value=0.017 Score=42.46 Aligned_cols=80 Identities=6% Similarity=-0.090 Sum_probs=57.1
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-----Ccee
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-----QPIP 79 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-----~~v~ 79 (136)
++.|.+ +|..+++...++. ... ....+++++++.++++...++.|.+||..++.....+.... ....
T Consensus 63 ~~~v~v--iD~~t~~~~~~i~-~~~-----~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~ 134 (328)
T 3dsm_A 63 SHVIFA--IDINTFKEVGRIT-GFT-----SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE 134 (328)
T ss_dssp GTEEEE--EETTTCCEEEEEE-CCS-----SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC
T ss_pred CCEEEE--EECcccEEEEEcC-CCC-----CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc
Confidence 456655 8999888888875 334 67899999998666666578999999999988766654332 1556
Q ss_pred EEEEccCCCEEEEE
Q 041215 80 CSTFNTDGSIFAYS 93 (136)
Q Consensus 80 ~v~~sp~~~~l~s~ 93 (136)
.|++ .++.++++.
T Consensus 135 ~i~~-~~~~lyv~~ 147 (328)
T 3dsm_A 135 QMVQ-YGKYVYVNC 147 (328)
T ss_dssp CEEE-ETTEEEEEE
T ss_pred eEEE-ECCEEEEEc
Confidence 7777 455555543
No 206
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=96.56 E-value=0.027 Score=45.17 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=42.7
Q ss_pred CceeceEEEEEeeCC--CCcceeEEEeeeCCCCccceeEEEEe----CCCCEEEEEcC-CCcEEEEeCCCcceeeec
Q 041215 2 GSIEGRVGVHHLDDS--QQSKNFTFKCHRDGSEIYSVNSLNFH----PIHHTFATAGS-DGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 2 gs~dG~v~i~~~d~~--~~~~~~~l~~h~~~~~~~~v~~l~~~----p~~~~l~s~~~-dg~v~vwd~~~~~~~~~~ 71 (136)
++.||.|.+ ||.. +.+....+.. .. ....++|+ |+|++++.++. ++.|.++|..+.+.+..+
T Consensus 214 ~~~dg~V~v--iD~~~~t~~~v~~i~~-G~-----~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i 282 (567)
T 1qks_A 214 IGRDGKVNM--IDLWMKEPTTVAEIKI-GS-----EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 282 (567)
T ss_dssp EETTSEEEE--EETTSSSCCEEEEEEC-CS-----EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred EcCCCeEEE--EECCCCCCcEeEEEec-CC-----CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 445676666 7774 6666666653 22 45789999 69987766665 588999998877666543
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.51 E-value=0.068 Score=38.45 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=42.3
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc----CCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR----CGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.+.++++++++.++++. +..|.+||..++........ ....++.++++|+|+++++...
T Consensus 55 ~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~ 117 (297)
T 3g4e_A 55 PVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMA 117 (297)
T ss_dssp CEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEE
T ss_pred ceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCC
Confidence 78999999999976665 45799999887654322111 1245788999999998876533
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.34 E-value=0.048 Score=40.23 Aligned_cols=63 Identities=8% Similarity=0.063 Sum_probs=47.5
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
....+++.++|.++++...++.|.+||..++........ +...+.+++|.+++.++++....+
T Consensus 249 ~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 456799999999999998889999999855643222221 245688999999999888776543
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=96.26 E-value=0.011 Score=48.22 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=44.2
Q ss_pred ceeEEEEeCCCCEEEEEcCC-----CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFATAGSD-----GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+..++|+|||++|+.++.+ ..|++||+.+++.+.. ..+...+..++|+|+ +.|+.++.+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~ 229 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAE 229 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecC
Confidence 67889999999877766543 3599999999876543 122223468899999 8888776544
No 210
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.25 E-value=0.1 Score=37.54 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=64.8
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC----------
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC---------- 74 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h---------- 74 (136)
||.-.++.+|+.+.+....+...........++.+.|. +|..++..-.+..|.+.|..+++++..+...
T Consensus 121 dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~ 199 (243)
T 3mbr_X 121 DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALT 199 (243)
T ss_dssp CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCC
T ss_pred CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccccc
Confidence 45555667999988888877654321222245677776 6676766666788999999999887665421
Q ss_pred ---CCceeEEEEccCCC-EEEEEEccccccccccc
Q 041215 75 ---GQPIPCSTFNTDGS-IFAYSVCYDWSKGAENH 105 (136)
Q Consensus 75 ---~~~v~~v~~sp~~~-~l~s~~~dd~~~~~~~~ 105 (136)
.+..+.|+|+|++. +++||-. |-+.++..
T Consensus 200 ~~~~~vlNGIA~d~~~~~lfVTGK~--wp~~~~v~ 232 (243)
T 3mbr_X 200 DSTNDVLNGIAFDAEHDRLFVTGKR--WPMLYEIR 232 (243)
T ss_dssp CTTSSCEEEEEEETTTTEEEEEETT--CSEEEEEE
T ss_pred CCcCCceEEEEEcCCCCEEEEECCC--CCcEEEEE
Confidence 24568999999765 5665544 44445544
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.20 E-value=0.056 Score=43.88 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=51.6
Q ss_pred EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC-------------cEEEEeCCCcc----eeee
Q 041215 8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG-------------AFNFWDKDSKQ----RLKA 70 (136)
Q Consensus 8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg-------------~v~vwd~~~~~----~~~~ 70 (136)
..|+.+|..+++.... ..... ....++|+ |++.|+.++.+. .|++|++.+.. .+..
T Consensus 155 ~~i~v~dl~tg~~~~~-~~~~~-----k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~ 227 (693)
T 3iuj_A 155 REIHLMDVESKQPLET-PLKDV-----KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG 227 (693)
T ss_dssp EEEEEEETTTCSEEEE-EEEEE-----ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEES
T ss_pred EEEEEEECCCCCCCcc-ccCCc-----eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEe
Confidence 4445577777764432 11111 23578999 998777776653 38999987653 3344
Q ss_pred ccc-CCCceeEEEEccCCCEEEEEEc
Q 041215 71 MSR-CGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 71 ~~~-h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
... |...+..+.|+|++++++....
T Consensus 228 ~~~~~~~~~~~~~~SpDg~~l~~~~~ 253 (693)
T 3iuj_A 228 AIPAQHHRYVGATVTEDDRFLLISAA 253 (693)
T ss_dssp CSGGGCCSEEEEEECTTSCEEEEEEE
T ss_pred cCCCCCeEEEEEEEcCCCCEEEEEEc
Confidence 444 5556788999999998765544
No 212
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.20 E-value=0.057 Score=39.51 Aligned_cols=97 Identities=10% Similarity=0.067 Sum_probs=65.1
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC----------
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC---------- 74 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h---------- 74 (136)
||.-.++.+|+.+.+....+..-........++.+.|. +|.+++..-.+..|.+.|..+++++..+...
T Consensus 152 dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~ 230 (268)
T 3nok_A 152 DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQV 230 (268)
T ss_dssp CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccc
Confidence 34555666999988888887654432222245777887 6777777667788999999999887655421
Q ss_pred ---CCceeEEEEccCC-CEEEEEEcccccccccc
Q 041215 75 ---GQPIPCSTFNTDG-SIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 75 ---~~~v~~v~~sp~~-~~l~s~~~dd~~~~~~~ 104 (136)
.+..+.|+|+|++ ++++||-- |-+.|+.
T Consensus 231 ~~~~~vlNGIA~dp~~~rlfVTGK~--Wp~~~ev 262 (268)
T 3nok_A 231 TNPEAVLNGIAVEPGSGRIFMTGKL--WPRLFEV 262 (268)
T ss_dssp CCTTCCEEEEEECTTTCCEEEEETT--CSEEEEE
T ss_pred cCcCCceEEEEEcCCCCEEEEeCCC--CCceEEE
Confidence 2466899999965 56776544 4433443
No 213
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.20 E-value=0.07 Score=38.88 Aligned_cols=88 Identities=8% Similarity=0.016 Sum_probs=59.7
Q ss_pred eEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC------------
Q 041215 7 RVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC------------ 74 (136)
Q Consensus 7 ~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h------------ 74 (136)
.-.++.+|+.+.+....+..-........++.+.|. ++.+++....++.|.+.|..+++.+..+...
T Consensus 125 s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~ 203 (266)
T 2iwa_A 125 TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFR 203 (266)
T ss_dssp SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccc
Confidence 334455899888877777643221111246788888 6777777767789999999999888776431
Q ss_pred -CCceeEEEEccCCCE-EEEEEc
Q 041215 75 -GQPIPCSTFNTDGSI-FAYSVC 95 (136)
Q Consensus 75 -~~~v~~v~~sp~~~~-l~s~~~ 95 (136)
....+.|+|+|++.. ++++..
T Consensus 204 ~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 204 DIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp TCCCEEEEEEETTTTEEEEEETT
T ss_pred ccCceEEEEEcCCCCEEEEECCC
Confidence 135689999999865 444433
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.11 E-value=0.12 Score=36.62 Aligned_cols=82 Identities=5% Similarity=-0.041 Sum_probs=52.7
Q ss_pred EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEe----CCCC-EEEEEcCCCcEEEEeCC-Ccc-----eeeecccCC-
Q 041215 8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFH----PIHH-TFATAGSDGAFNFWDKD-SKQ-----RLKAMSRCG- 75 (136)
Q Consensus 8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~----p~~~-~l~s~~~dg~v~vwd~~-~~~-----~~~~~~~h~- 75 (136)
..++.+|.. ++.. .+..+.. ....++|+ |++. ++++...++.|.+|+.. ++. ....+..+.
T Consensus 153 ~~l~~~~~~-g~~~-~~~~~~~-----~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 153 GSIYCFTTD-GQMI-QVDTAFQ-----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp EEEEEECTT-SCEE-EEEEEES-----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred CeEEEECCC-CCEE-EeccCCC-----CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 455667655 3332 2233344 56889999 9995 45555667889999976 343 223333343
Q ss_pred CceeEEEEccCCCEEEEEEcc
Q 041215 76 QPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 76 ~~v~~v~~sp~~~~l~s~~~d 96 (136)
..+..++++++|.++++...+
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETT
T ss_pred CCCCceEECCCCCEEEEEcCC
Confidence 567889999999988875443
No 215
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.11 E-value=0.079 Score=37.20 Aligned_cols=58 Identities=9% Similarity=0.058 Sum_probs=44.7
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee-ecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.+.++++.+++.++++...++.|..||. ++.... ........+..+++++++.++++.
T Consensus 100 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 158 (299)
T 2z2n_A 100 APYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE 158 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred CceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence 6789999999998888877888999998 554332 233345678999999999888765
No 216
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.11 E-value=0.071 Score=37.43 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=44.5
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce-eeecccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR-LKAMSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
.+.++++.+++.++++...++.|..|+.. +.. ...+......+..+++++++.++++..
T Consensus 58 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 117 (299)
T 2z2n_A 58 KVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEM 117 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred ceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEec
Confidence 68899999999988888778889999976 332 122223456789999999998888653
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.99 E-value=0.043 Score=44.77 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=58.3
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-CceeEEEEc
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-QPIPCSTFN 84 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v~~s 84 (136)
|.|.. +|..+++....+. +.. ++....+...+.+++.++.|+.+++||..+++.+..+.... ....-+.|.
T Consensus 457 g~l~A--~D~~tG~~~W~~~-~~~-----~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~ 528 (677)
T 1kb0_A 457 GRLLA--WDPVAQKAAWSVE-HVS-----PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYM 528 (677)
T ss_dssp EEEEE--EETTTTEEEEEEE-ESS-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred cEEEE--EeCCCCcEEeecC-CCC-----CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEE
Confidence 55554 8999999988876 444 45555667778888889999999999999999998886443 333556777
Q ss_pred cCCCEEE
Q 041215 85 TDGSIFA 91 (136)
Q Consensus 85 p~~~~l~ 91 (136)
.+|++++
T Consensus 529 ~~G~~~v 535 (677)
T 1kb0_A 529 VDGRQYV 535 (677)
T ss_dssp ETTEEEE
T ss_pred eCCEEEE
Confidence 8887544
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=95.97 E-value=0.062 Score=41.25 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=53.2
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEE-EcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFAT-AGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD 86 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s-~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~ 86 (136)
.++.+|..+.+.+..+.. .. .+..|.++++++ +|++ ...++.|.++|..+++.+.++... +.-+.|.+++|
T Consensus 312 ~V~viD~~t~kv~~~i~v-g~-----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 312 FVVVLDAKTGERLAKFEM-GH-----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEEETTTCCEEEEEEE-EE-----EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EEEEEECCCCeEEEEEEC-CC-----CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 456699999998888764 23 678999999995 6655 455889999999999988877543 33456666665
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=95.80 E-value=0.17 Score=37.15 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=53.4
Q ss_pred EEEeeCCCCcceeEEEeeeC-CCCccceeEEEEeCCC-CEEEEEc---CCCcEEEEeCCCcceeeecccCC---------
Q 041215 10 VHHLDDSQQSKNFTFKCHRD-GSEIYSVNSLNFHPIH-HTFATAG---SDGAFNFWDKDSKQRLKAMSRCG--------- 75 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~-~~~~~~v~~l~~~p~~-~~l~s~~---~dg~v~vwd~~~~~~~~~~~~h~--------- 75 (136)
|+.||..+++....+..... ..+...+..+++++++ ..+++.. .++.|.+||..++.....+..|.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 44577777766655543211 0111146889999865 5556655 56789999998776554443220
Q ss_pred --------------------CceeEEEEccCCCEEEEEEc
Q 041215 76 --------------------QPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 76 --------------------~~v~~v~~sp~~~~l~s~~~ 95 (136)
..++.|+|+|+++.|..+..
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence 13578999999987766644
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=95.75 E-value=0.0057 Score=46.07 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=37.9
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA 70 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~ 70 (136)
|+.||.+.. ||..+++.+..+.. + .+.+..+..++..++.++.|+.|..||..+|+.+..
T Consensus 15 gs~dg~v~a--~d~~tG~~~W~~~~--~-----~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 15 STLDGSLHA--VSKRTGSIKWTLKE--D-----PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK 74 (369)
T ss_dssp EETTSEEEE--EETTTCCEEEEEEC--C-----CSCCCC-----CCEEECTTTCCEEEC-----CCSEE
T ss_pred EcCCCEEEE--EECCCCCEEEEecC--C-----CceecceEcCCCEEEEeCCCCEEEEEECCCCceeee
Confidence 566787765 99999999988875 4 554555556677788888999999999988766433
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=95.65 E-value=0.13 Score=36.99 Aligned_cols=57 Identities=2% Similarity=-0.031 Sum_probs=45.0
Q ss_pred ceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
......|+|+++ ++++...++.|..|+. ++. ...+..+...++.++++++|+++++.
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~ 103 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCE 103 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEE
Confidence 567899999997 7778778889999987 454 34555566778999999999977753
No 222
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.54 E-value=0.21 Score=34.94 Aligned_cols=58 Identities=3% Similarity=-0.113 Sum_probs=43.9
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee-ecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.+.++++.+++.++++....+.|.+|+. ++.... ........+.++++++++.++++.
T Consensus 189 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 189 APVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred CcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 5789999999988888777788999998 444332 233345678899999999977754
No 223
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.54 E-value=0.18 Score=35.37 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=45.0
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee-eecccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL-KAMSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
.+.++++.+++.++++...++.|..||.. +... .........+.++++++++.++++..
T Consensus 63 ~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 122 (300)
T 2qc5_A 63 KVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQL 122 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred cceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEcc
Confidence 67899999999988888778889999987 5442 22233446789999999999887653
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=95.53 E-value=0.46 Score=34.63 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=42.0
Q ss_pred ceeEEEEeCCCCEE-EEEcCCCcEEEEeCC--Cc-ce-----eeecccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTF-ATAGSDGAFNFWDKD--SK-QR-----LKAMSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~--~~-~~-----~~~~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
....++|+|+++.| ++...++.|.+|++. ++ .. ...+.........++++++|.++++..
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~ 248 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW 248 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence 56789999999755 555567889999986 55 21 222333345678899999998877653
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=95.44 E-value=0.013 Score=47.56 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=42.8
Q ss_pred ceeEEEEeCCCCEEEE-E----cCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215 35 SVNSLNFHPIHHTFAT-A----GSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s-~----~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.+..++|+|+|++|+- . +....|++||+.+++.+... .+......++|+ |++.|+.++.++
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~ 195 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDK 195 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecC
Confidence 6788999999987663 2 22346999999998765431 111123678999 999888887764
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=95.43 E-value=0.19 Score=36.10 Aligned_cols=65 Identities=14% Similarity=-0.027 Sum_probs=45.6
Q ss_pred eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc----CCCceeEEEEccCCCEEEE
Q 041215 22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR----CGQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 22 ~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~v~~sp~~~~l~s 92 (136)
..+..... .+..++++++|+++++...++.|.+|+.. +........ ....++.++++++|.++++
T Consensus 79 ~~~~~~~~-----~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 79 DVLLDATA-----FTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp EEEEESCS-----CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred EEEeCCCC-----ccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence 34444455 68899999999988777767789999875 543221111 1245678999999998886
No 227
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=95.30 E-value=0.14 Score=38.68 Aligned_cols=56 Identities=5% Similarity=0.080 Sum_probs=44.9
Q ss_pred EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEc-CCCcEEEEeCCCcceeeec
Q 041215 10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAG-SDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~-~dg~v~vwd~~~~~~~~~~ 71 (136)
++.+|..+.+....+. -.. ...++.|+|+++ +++++. .++.|.+||+.+++.+..+
T Consensus 300 V~VID~~t~~vv~~i~-~g~-----~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 300 VTSVTGLVGQTSSQIS-LGH-----DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCEEEEEEE-CCC-----CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 4558888888877774 233 578999999998 788877 4899999999999888773
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=95.30 E-value=0.14 Score=38.85 Aligned_cols=67 Identities=6% Similarity=-0.016 Sum_probs=50.5
Q ss_pred EeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEc-CCCcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215 12 HLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAG-SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT 85 (136)
Q Consensus 12 ~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~-~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 85 (136)
.+|..+.+....+.... ...++.|+|+++ ++++.. .++.|.++|+.+++.+.++... .....+++.+
T Consensus 298 ViD~~t~~vv~~i~vg~------~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg-~~P~~i~~~~ 366 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLSVQN 366 (368)
T ss_dssp EEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEECCC
T ss_pred EEECCCCeEEEEEECCC------CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC-CCCCEEEeec
Confidence 48888888777766432 568999999996 677777 5899999999999998888654 3345565543
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=95.07 E-value=0.26 Score=38.17 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=46.0
Q ss_pred EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEc-CCCcEEEEeCCCcceeeec
Q 041215 10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAG-SDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~-~dg~v~vwd~~~~~~~~~~ 71 (136)
++.+|..+.+....+..- . ....+.|+|+++ ++++.. .++.|.++|+.+++.+.++
T Consensus 352 VsVID~~T~kvv~~I~vg-~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 352 VVVLNAETGERINKIELG-H-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTCCEEEEEEEE-E-----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEEECC-C-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 344999999988888642 2 468999999998 888877 5899999999999988876
No 230
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.06 E-value=0.14 Score=41.72 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=56.7
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce-eEEEE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI-PCSTF 83 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v-~~v~~ 83 (136)
+|.|.. +|..+++....+... . ++....+...+.+++.++.|+.|++||..+++.+..+....... .-+.+
T Consensus 437 ~g~l~A--~D~~tG~~~W~~~~~-~-----~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~ 508 (668)
T 1kv9_A 437 SGALLA--WDPVKQKAAWKVPYP-T-----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF 508 (668)
T ss_dssp EEEEEE--EETTTTEEEEEEEES-S-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred cceEEE--EeCCCCcEEEEccCC-C-----CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE
Confidence 466655 999999998887643 2 33344455567888899999999999999999988776543211 33455
Q ss_pred ccCCC-EEEEEEc
Q 041215 84 NTDGS-IFAYSVC 95 (136)
Q Consensus 84 sp~~~-~l~s~~~ 95 (136)
..+|+ +++.+.+
T Consensus 509 ~~~G~~yva~~~G 521 (668)
T 1kv9_A 509 ELAGRQYVAIMAG 521 (668)
T ss_dssp EETTEEEEEEEEC
T ss_pred EECCEEEEEEEec
Confidence 56776 4444443
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=94.88 E-value=0.1 Score=37.38 Aligned_cols=78 Identities=8% Similarity=0.089 Sum_probs=50.1
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEE
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCST 82 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~ 82 (136)
+.++.+ +.+|.. ++....+..... .+.++...+++.+++.. +.|..+| .++.....+......+.++.
T Consensus 154 t~~~~l--~~~d~~-g~~~~~~~~~~~-----~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~ 221 (330)
T 3hxj_A 154 SNDNYL--YAINPD-GTEKWRFKTNDA-----ITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPA 221 (330)
T ss_dssp CTTSEE--EEECTT-SCEEEEEECSSC-----CCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCE
T ss_pred cCCCEE--EEECCC-CCEeEEEecCCC-----ceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceE
Confidence 334444 337766 666655554444 56667777777755544 6788888 67766666555556678888
Q ss_pred EccCCCEEEE
Q 041215 83 FNTDGSIFAY 92 (136)
Q Consensus 83 ~sp~~~~l~s 92 (136)
..+++.+++.
T Consensus 222 ~~~~g~l~v~ 231 (330)
T 3hxj_A 222 ISEDGTIYVT 231 (330)
T ss_dssp ECTTSCEEEE
T ss_pred ECCCCeEEEE
Confidence 8888877664
No 232
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.77 E-value=0.16 Score=40.82 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=55.2
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce-eEEEE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI-PCSTF 83 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v-~~v~~ 83 (136)
+|.+.. +|..+++........ . ++..-.+...+.+++.++.|+.++.||..+|+.+-++....... .-+.|
T Consensus 465 ~G~l~A--~D~~tG~~~W~~~~~-~-----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y 536 (582)
T 1flg_A 465 VGSLRA--MDPVSGKVVWEHKEH-L-----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW 536 (582)
T ss_dssp SEEEEE--ECTTTCCEEEEEEES-S-----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred cceEEE--EECCCCCEEEEecCC-C-----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEE
Confidence 455544 999999988876643 2 22222222246778889999999999999999988776543222 23677
Q ss_pred ccCCCE-EEEEEc
Q 041215 84 NTDGSI-FAYSVC 95 (136)
Q Consensus 84 sp~~~~-l~s~~~ 95 (136)
..+|++ +++.++
T Consensus 537 ~~~G~qYv~~~~G 549 (582)
T 1flg_A 537 EQDGEQYLGVTVG 549 (582)
T ss_dssp EETTEEEEEEEEC
T ss_pred EECCEEEEEEEcc
Confidence 788874 444444
No 233
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.76 E-value=0.17 Score=38.57 Aligned_cols=58 Identities=7% Similarity=0.088 Sum_probs=37.0
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee----cccCCCc--eeEEEEccC-CCEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA----MSRCGQP--IPCSTFNTD-GSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~----~~~h~~~--v~~v~~sp~-~~~l~s 92 (136)
.+.+++++|+...|+.+..++.|..||..++..... ..+.... .+.++|+|+ +.++++
T Consensus 220 ~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 220 KIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp CCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred CcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 578899999544444466788899999887653221 2222222 239999995 555554
No 234
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.70 E-value=0.14 Score=39.04 Aligned_cols=59 Identities=7% Similarity=-0.110 Sum_probs=44.5
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
....|+|+++++++++...++.|++||..++........ ..... ++|++++..+.++..
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~ 190 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGW 190 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBS
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEec
Confidence 567999999999888888788999999987765443333 23334 999999987776544
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=94.60 E-value=0.15 Score=36.41 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=54.4
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
|+.+|.+. .+|.. +.....+..... .+.++...+++.++ .++.++.|..+|.. +.....+......+.++
T Consensus 113 ~t~~~~l~--~~d~~-g~~~~~~~~~~~-----~~~~~~~~~~g~l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 113 TSMDGHLY--AINTD-GTEKWRFKTKKA-----IYATPIVSEDGTIY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp ECTTSEEE--EECTT-SCEEEEEECSSC-----CCSCCEECTTSCEE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred EecCCEEE--EEcCC-CCEEEEEcCCCc-----eeeeeEEcCCCEEE-EEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 44455554 47777 666666554444 45666777777644 46667889999988 77666665555667788
Q ss_pred EEccCCCEEEEE
Q 041215 82 TFNTDGSIFAYS 93 (136)
Q Consensus 82 ~~sp~~~~l~s~ 93 (136)
.+.+++.+++..
T Consensus 183 ~~d~~g~l~v~t 194 (330)
T 3hxj_A 183 SIGKDGTIYFGS 194 (330)
T ss_dssp EECTTCCEEEES
T ss_pred EEcCCCEEEEEe
Confidence 888888876643
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=94.59 E-value=0.079 Score=39.71 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=47.7
Q ss_pred CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC---CEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH---HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
|+.||.+.. ||.++++....+..... ....+.++. ..++.++.++.|..||..+++.+-++.. ..++
T Consensus 136 ~~~dg~v~a--~d~~tG~~~W~~~~~~~-------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv 205 (369)
T 2hz6_A 136 GRTEYTITM--YDTKTRELRWNATYFDY-------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPV 205 (369)
T ss_dssp EEEEEEEEC--CCSSSSSCCCEEEEEEE-------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCE
T ss_pred EecCCEEEE--EECCCCCEEEeEecccc-------cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCce
Confidence 455666655 77777777666543211 112233322 4566778899999999999988766653 3444
Q ss_pred e-EEEEccCCCE
Q 041215 79 P-CSTFNTDGSI 89 (136)
Q Consensus 79 ~-~v~~sp~~~~ 89 (136)
. ...+++++..
T Consensus 206 ~~~~~~~~dg~~ 217 (369)
T 2hz6_A 206 VAFYVWQREGLR 217 (369)
T ss_dssp EEEEECTTSSCE
T ss_pred EEEEEecCCceE
Confidence 3 4456667754
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=94.17 E-value=0.43 Score=37.49 Aligned_cols=83 Identities=8% Similarity=0.125 Sum_probs=56.6
Q ss_pred EEEeeCCCCcceeEEEeeeCCCCccce-eEEEEeCCCCEEEEEc-------------------CCCcEEEEeCCCcceee
Q 041215 10 VHHLDDSQQSKNFTFKCHRDGSEIYSV-NSLNFHPIHHTFATAG-------------------SDGAFNFWDKDSKQRLK 69 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~~~~~~~v-~~l~~~p~~~~l~s~~-------------------~dg~v~vwd~~~~~~~~ 69 (136)
+..+|..+.+.+..+..-.. .. .+ -.+.|+|+++.+++.. .+..|.+||+.+++.+.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~-~~--~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRG-DQ--YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp EEEECTTTCCEEEECCSBCT-TC--CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred EEEEECCCCeEEEEEccCCC-Cc--cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 44589888888888763322 00 11 1477899999888885 36789999999887777
Q ss_pred ecccC--CCceeEEEE--ccCCCEEEEEEc
Q 041215 70 AMSRC--GQPIPCSTF--NTDGSIFAYSVC 95 (136)
Q Consensus 70 ~~~~h--~~~v~~v~~--sp~~~~l~s~~~ 95 (136)
++... ......|.| +|+++++..++.
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence 76542 133456666 999987665554
No 238
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.82 E-value=0.37 Score=38.44 Aligned_cols=81 Identities=14% Similarity=0.010 Sum_probs=52.9
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc-eeEEEE
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP-IPCSTF 83 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~-v~~v~~ 83 (136)
+|.+. .+|..+++....+... . .+....+...+..++.++.|+.|++||..+++.+.++...... -.-+.|
T Consensus 443 ~g~l~--a~D~~tG~~~W~~~~~-~-----~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~ 514 (571)
T 2ad6_A 443 MGQIR--AFDLTTGKAKWTKWEK-F-----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTY 514 (571)
T ss_dssp CEEEE--EECTTTCCEEEEEEES-S-----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCeEE--EEECCCCCEEEEecCC-C-----CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEE
Confidence 45554 4999999988887532 2 2222233334567777899999999999999998777543221 123456
Q ss_pred ccCCCEEEEE
Q 041215 84 NTDGSIFAYS 93 (136)
Q Consensus 84 sp~~~~l~s~ 93 (136)
..++++++..
T Consensus 515 ~~~G~~yv~~ 524 (571)
T 2ad6_A 515 SFKGKQYIGS 524 (571)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 6788765543
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=93.60 E-value=0.17 Score=41.18 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=29.9
Q ss_pred CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215 55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS 99 (136)
Q Consensus 55 g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~ 99 (136)
+.|..||+.+++.+-++. +..++....++..+.+++.++.++..
T Consensus 457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l 500 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRL 500 (677)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEE
T ss_pred cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcE
Confidence 679999999998876664 33445555566677777767665543
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=92.82 E-value=0.42 Score=39.04 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=32.7
Q ss_pred CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215 55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA 102 (136)
Q Consensus 55 g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~ 102 (136)
|.|..||+.+++.+-++..+ .++..-.++..+.+++.++.|++...+
T Consensus 455 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~ 501 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAY 501 (689)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred eeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEE
Confidence 67999999999887776554 333444566677788878777665444
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=92.14 E-value=0.6 Score=33.86 Aligned_cols=79 Identities=9% Similarity=0.008 Sum_probs=50.7
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-----CCcee
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-----GQPIP 79 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-----~~~v~ 79 (136)
++.+.+ +|..+.+.+.++..-.. . ...+++++..|+.+..++.|.++|..+.+.+..+.-. -..++
T Consensus 85 ~~~v~v--iD~~t~~v~~~i~~g~~-----~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 85 KNIGFI--YDRRTLSNIKNFTHQMK-----D--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp CSEEEE--EETTTTEEEEEEECCSS-----S--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CCEEEE--EECCCCcEEEEEECCCC-----C--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 445544 88888877777753212 1 2335567765555566789999999988777665422 12467
Q ss_pred EEEEccCCCEEEEE
Q 041215 80 CSTFNTDGSIFAYS 93 (136)
Q Consensus 80 ~v~~sp~~~~l~s~ 93 (136)
.+.|. ++.+++..
T Consensus 156 ele~~-dg~lyvn~ 168 (266)
T 2iwa_A 156 ELEYI-NGEVWANI 168 (266)
T ss_dssp EEEEE-TTEEEEEE
T ss_pred eEEEE-CCEEEEec
Confidence 88888 67666554
No 242
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=91.64 E-value=1.6 Score=31.32 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=43.2
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
....++|++++.++++-...+.|..||.... ....+ .....+..|+++++++++++..
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~ 90 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGW 90 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEec
Confidence 5678999999998888778889999987653 32222 2235688999999999777543
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=91.58 E-value=0.83 Score=37.03 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=48.9
Q ss_pred eEEEEEeeCCC--Ccc-eeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCCCcc------------eeee
Q 041215 7 RVGVHHLDDSQ--QSK-NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKDSKQ------------RLKA 70 (136)
Q Consensus 7 ~v~i~~~d~~~--~~~-~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~~~~------------~~~~ 70 (136)
.|.+ +|..+ ++. ...+.. .. ...++.++|||++++.++ .+..|.++|+.+.. .+.+
T Consensus 255 ~V~V--ID~~~~~~~~~~~~Ipv-g~-----~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 255 GVKV--VDGRKEASSLFTRYIPI-AN-----NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp TEEE--EECSGGGCCSSEEEEEE-ES-----SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred cEEE--EeCcccCCceeEEEEec-CC-----CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 3555 78776 444 444443 33 568999999997655555 56889999998652 2334
Q ss_pred cccCCCceeEEEEccCCC
Q 041215 71 MSRCGQPIPCSTFNTDGS 88 (136)
Q Consensus 71 ~~~h~~~v~~v~~sp~~~ 88 (136)
. .-......++|+++|.
T Consensus 327 v-~vG~gP~h~aF~~dG~ 343 (595)
T 1fwx_A 327 P-ELGLGPLHTAFDGRGN 343 (595)
T ss_dssp C-BCCSCEEEEEECTTSE
T ss_pred c-CCCCCcceEEECCCCe
Confidence 3 2334568899999994
No 244
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=91.47 E-value=0.41 Score=39.36 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=39.5
Q ss_pred ceeEEEEe-CCCCEEEE-EcCCC----cEEEEeCCCc-ceee-ecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 35 SVNSLNFH-PIHHTFAT-AGSDG----AFNFWDKDSK-QRLK-AMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 35 ~v~~l~~~-p~~~~l~s-~~~dg----~v~vwd~~~~-~~~~-~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
.+...+|+ |+|++|+- .+.+| .|+++|+.++ ..+. .+. .....++|+|+++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEEC
Confidence 56789999 99986653 33333 4999999988 5321 111 123578999999877766544
No 245
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=91.38 E-value=1.1 Score=36.25 Aligned_cols=82 Identities=13% Similarity=0.006 Sum_probs=53.6
Q ss_pred ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC-ceeEEEEc
Q 041215 6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ-PIPCSTFN 84 (136)
Q Consensus 6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~s 84 (136)
|.+. -+|..+++.+..... .. ++..-.+...+.+++.++.|+.|+.||..+|+.+-++..... ...-+.|.
T Consensus 453 G~l~--A~D~~tG~~~W~~~~-~~-----~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~ 524 (599)
T 1w6s_A 453 GQIK--AYNAITGDYKWEKME-RF-----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYT 524 (599)
T ss_dssp EEEE--EECTTTCCEEEEEEE-SS-----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred CeEE--EEECCCCCEEeEecC-CC-----CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEE
Confidence 4554 489999988877652 22 222212233467788899999999999999999877754432 22336677
Q ss_pred cCCCE-EEEEEc
Q 041215 85 TDGSI-FAYSVC 95 (136)
Q Consensus 85 p~~~~-l~s~~~ 95 (136)
.+|++ +++..+
T Consensus 525 ~~G~qyv~~~~G 536 (599)
T 1w6s_A 525 HKGTQYVAIYYG 536 (599)
T ss_dssp ETTEEEEEEEEC
T ss_pred eCCEEEEEEEcc
Confidence 78874 555544
No 246
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=91.36 E-value=1.5 Score=31.99 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=49.9
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCcccee--EEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVN--SLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~--~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 81 (136)
.+|.|+. +|..+++....+ -.. ... .+++..+ ++++..-.++.+.+||..+.+.+.++.... . ..
T Consensus 73 ~~g~v~~--iD~~Tgkv~~~~--l~~-----~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-e--Gw 139 (268)
T 3nok_A 73 HQGTLRQ--LSLESAQPVWME--RLG-----NIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRYSG-E--GW 139 (268)
T ss_dssp TTTEEEE--CCSSCSSCSEEE--ECT-----TCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEECSS-C--CC
T ss_pred CCCEEEE--EECCCCcEEeEE--CCC-----CcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeCCC-c--ee
Confidence 4566555 899999888877 333 333 3555432 555555567899999999999888876432 1 12
Q ss_pred EEccCCCEEEEEEc
Q 041215 82 TFNTDGSIFAYSVC 95 (136)
Q Consensus 82 ~~sp~~~~l~s~~~ 95 (136)
.+++++..|..+.+
T Consensus 140 GLt~Dg~~L~vSdG 153 (268)
T 3nok_A 140 GLCYWNGKLVRSDG 153 (268)
T ss_dssp CEEEETTEEEEECS
T ss_pred EEecCCCEEEEECC
Confidence 33356666665443
No 247
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=91.06 E-value=0.89 Score=35.72 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=42.8
Q ss_pred ceeEEEEeCCCCEEEEEcCC------CcEEEEeCCCcceeeecccCCC---ceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSD------GAFNFWDKDSKQRLKAMSRCGQ---PIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~h~~---~v~~v~~sp~~~~l~s~ 93 (136)
....+...|++ +++++..+ +.|.++|..+.+.+.++..... --..+.|+|+++.++++
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS 205 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSS 205 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEEC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEc
Confidence 34567788999 66666655 6799999999998888763322 23458899999987765
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=90.49 E-value=0.89 Score=33.01 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=49.1
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--C---Ccee
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--G---QPIP 79 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~---~~v~ 79 (136)
++.+. .+|..+.+.+.++.-- . ....+.+++..|+..+.++.|.++|..+.+.+..+.-. . ..++
T Consensus 106 ~~~v~--v~D~~t~~~~~ti~~~-~-------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 106 NGLGF--VWNIRNLRQVRSFNYD-G-------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp SSEEE--EEETTTCCEEEEEECS-S-------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred CCEEE--EEECccCcEEEEEECC-C-------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 34444 4888888888887642 2 12233356765555555788999999998877665432 2 3345
Q ss_pred EEEEccCCCEEEEE
Q 041215 80 CSTFNTDGSIFAYS 93 (136)
Q Consensus 80 ~v~~sp~~~~l~s~ 93 (136)
.+.|. +|++++..
T Consensus 176 ELe~~-~G~lyan~ 188 (262)
T 3nol_A 176 ELEWV-DGEIFANV 188 (262)
T ss_dssp EEEEE-TTEEEEEE
T ss_pred eeEEE-CCEEEEEE
Confidence 67776 67666644
No 249
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=90.16 E-value=2.3 Score=31.05 Aligned_cols=67 Identities=4% Similarity=-0.019 Sum_probs=40.1
Q ss_pred ceeceEEEEEeeCCCCcceeEEEeeeCCC--C--cccee-EEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc
Q 041215 3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E--IYSVN-SLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR 73 (136)
Q Consensus 3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~--~--~~~v~-~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 73 (136)
+.+|.+.. +|..+++.+..+....... . ...+. .+.. .+..++.++.++.|..+|..+++.+-.+..
T Consensus 60 ~~~g~v~a--~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 60 DRAGLVKA--LNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp CTTSEEEE--EETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred cCCCeEEE--EEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 44565544 8888888887765421100 0 00222 2222 345677777889999999999987655543
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=90.08 E-value=3.9 Score=29.20 Aligned_cols=61 Identities=7% Similarity=0.029 Sum_probs=42.5
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeecccCCCceeEEEEc---cCCCEEEEEEcc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAMSRCGQPIPCSTFN---TDGSIFAYSVCY 96 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~h~~~v~~v~~s---p~~~~l~s~~~d 96 (136)
....+++.++|+++++....+.|.+++.. +.. +..+........+++|. |++..|..+...
T Consensus 213 ~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 213 NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 45678999999888777777889999875 544 22344334668999998 886654444443
No 251
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=89.93 E-value=0.58 Score=34.37 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=39.6
Q ss_pred eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215 4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI 78 (136)
Q Consensus 4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v 78 (136)
.+|.+.. +|..+++.......... ..+...... +..|+.++.+|.|.++|..+++.+..+......+
T Consensus 285 ~~g~l~~--~d~~tG~~~w~~~~~~~----~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~ 351 (376)
T 3q7m_A 285 QNDRVMA--LTIDGGVTLWTQSDLLH----RLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGF 351 (376)
T ss_dssp TTCCEEE--EETTTCCEEEEECTTTT----SCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCB
T ss_pred CCCeEEE--EECCCCcEEEeecccCC----CcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 3445443 77777776655431111 012222222 4677788889999999999998876665433333
No 252
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=89.71 E-value=0.98 Score=37.10 Aligned_cols=59 Identities=8% Similarity=-0.062 Sum_probs=37.8
Q ss_pred eEEEEeCCCCEEEEEcCC-----CcEEEEeCCCcce--eeecc-cCCCceeEEEEccCCCEEEEEEc
Q 041215 37 NSLNFHPIHHTFATAGSD-----GAFNFWDKDSKQR--LKAMS-RCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 37 ~~l~~~p~~~~l~s~~~d-----g~v~vwd~~~~~~--~~~~~-~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
..++|+|+++.|+....+ ..|.++++.++.. ...+. ........+.|+|++++|+..+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~ 290 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ 290 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec
Confidence 468899999766555543 2577778766532 12222 22244567899999998876653
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=89.67 E-value=2.9 Score=33.87 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=55.1
Q ss_pred eeCCCCcceeEEEe-eeCCCCccceeEEEE-e-CCCCEEEEEc------------------CCCcEEEEeCCCcceeeec
Q 041215 13 LDDSQQSKNFTFKC-HRDGSEIYSVNSLNF-H-PIHHTFATAG------------------SDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 13 ~d~~~~~~~~~l~~-h~~~~~~~~v~~l~~-~-p~~~~l~s~~------------------~dg~v~vwd~~~~~~~~~~ 71 (136)
+|..+.+...++.- ... .+..+++ . |++.++++++ .++.+.+.|..+.+.+.++
T Consensus 117 Idl~t~~~~~ii~ip~g~-----~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI 191 (595)
T 1fwx_A 117 VRCDVMKCDAILEIPNAK-----GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV 191 (595)
T ss_dssp EETTTTEEEEEEECSSCC-----SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE
T ss_pred EECCCceEeeEEeCCCCC-----CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEE
Confidence 56666665554432 122 5778888 5 9998888884 2357889999998888777
Q ss_pred ccCCCceeEEEEccCCCEEEEEEcc
Q 041215 72 SRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 72 ~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
.-.. ....++++|+|.++.+++.+
T Consensus 192 ~Vgg-~pd~~~~spdGk~~~vt~~~ 215 (595)
T 1fwx_A 192 LVSG-NLDNCDADYEGKWAFSTSYN 215 (595)
T ss_dssp EESS-CCCCEEECSSSSEEEEEESC
T ss_pred EeCC-CccceEECCCCCEEEEEecC
Confidence 5433 45778899999998877644
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=89.44 E-value=1.7 Score=31.10 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=48.4
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--C---Ccee
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--G---QPIP 79 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~---~~v~ 79 (136)
++.+. .+|..+.+.+.++.-- . .-..++ +++..|+.+..++.|.++|..+.+.+..+.-. . ..++
T Consensus 84 ~~~v~--v~D~~tl~~~~ti~~~-~-----~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 84 NHEGF--VYDLATLTPRARFRYP-G-----EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp SSEEE--EEETTTTEEEEEEECS-S-----CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CCEEE--EEECCcCcEEEEEeCC-C-----CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 34444 4888888888887642 2 223444 45655555555788999999988777665432 1 3456
Q ss_pred EEEEccCCCEEEEE
Q 041215 80 CSTFNTDGSIFAYS 93 (136)
Q Consensus 80 ~v~~sp~~~~l~s~ 93 (136)
.+.|. +|++++..
T Consensus 154 eLe~~-~G~lyanv 166 (243)
T 3mbr_X 154 ELEWV-NGELLANV 166 (243)
T ss_dssp EEEEE-TTEEEEEE
T ss_pred eeEEe-CCEEEEEE
Confidence 66665 66666544
No 255
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=88.45 E-value=6.9 Score=29.83 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=40.7
Q ss_pred ceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecc-cCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMS-RCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....++++| ++.++++-...+.|..++...+....... ......+.|+|+|++.++..+
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 457889999 67878777777889999988664322111 122456789999999844434
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=86.60 E-value=6.2 Score=27.31 Aligned_cols=58 Identities=10% Similarity=-0.009 Sum_probs=37.0
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC-CEEEE
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG-SIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s 92 (136)
....++++|++ .++++-...+.|.+++.................+.++++|++ .++++
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~ 139 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT 139 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEE
Confidence 56899999976 455566666789999886432221122222456899999964 44444
No 257
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=86.21 E-value=6.5 Score=27.19 Aligned_cols=59 Identities=8% Similarity=0.023 Sum_probs=39.0
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.+.+++|++++ .++++-...+.|..++.........+.........+++++++..+..+
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWT 96 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEE
Confidence 67899999976 455555567889999987654332232223567899999875544433
No 258
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=86.13 E-value=5.6 Score=31.13 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=39.8
Q ss_pred ceeEEEEeCCC---CEEEEEcCCCcEEEEeCCCcc--ee--------eecccCCCceeEEEEccCCC
Q 041215 35 SVNSLNFHPIH---HTFATAGSDGAFNFWDKDSKQ--RL--------KAMSRCGQPIPCSTFNTDGS 88 (136)
Q Consensus 35 ~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~~~--~~--------~~~~~h~~~v~~v~~sp~~~ 88 (136)
+|..+.|||.+ ..|+.=..|+.|++||+.... .. ..+......|.+++|..++-
T Consensus 126 ~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~l 192 (452)
T 3pbp_A 126 SIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGL 192 (452)
T ss_dssp CEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred ceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCc
Confidence 79999999998 488899999999999987521 11 11112236788999998764
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=85.26 E-value=10 Score=30.38 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=49.3
Q ss_pred EEEEeeCCCCc--ceeEEEe-eeCCCCccceeEEEEeCCCCEEEEEcCC-CcEEEEeCCCcceeeecccCC-CceeEEEE
Q 041215 9 GVHHLDDSQQS--KNFTFKC-HRDGSEIYSVNSLNFHPIHHTFATAGSD-GAFNFWDKDSKQRLKAMSRCG-QPIPCSTF 83 (136)
Q Consensus 9 ~i~~~d~~~~~--~~~~l~~-h~~~~~~~~v~~l~~~p~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~h~-~~v~~v~~ 83 (136)
.++.||..+++ .+..+.. +.. ...++++.+++.+++.|+.+ ..+.+||..+..-.....-.. ..-.+++.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~-----~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~ 294 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDM-----FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSAT 294 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCC-----SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEE
T ss_pred EEEEEeCCCCcEEeCcccCCCCCC-----ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEE
Confidence 45678876543 2222221 122 34457788899999999854 579999987654322211111 12245666
Q ss_pred ccCCCEEEEEEc
Q 041215 84 NTDGSIFAYSVC 95 (136)
Q Consensus 84 sp~~~~l~s~~~ 95 (136)
.+++++++.|+.
T Consensus 295 ~~dg~iyv~GG~ 306 (656)
T 1k3i_A 295 MSDGRVFTIGGS 306 (656)
T ss_dssp CTTSCEEEECCC
T ss_pred ecCCeEEEEeCc
Confidence 779999998873
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=84.35 E-value=9.2 Score=27.28 Aligned_cols=60 Identities=7% Similarity=-0.052 Sum_probs=39.0
Q ss_pred ceeEEEEeCCCCE-EEEEcCCCcEEEEeCCCcc--eeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHT-FATAGSDGAFNFWDKDSKQ--RLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~-l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
....++++|++.. +++-...+.|..|++.... ....+....+ ...|++.++|.++++...
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 4578999999974 4555556789999886421 1111111223 688999999987776543
No 261
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.36 E-value=2.4 Score=36.09 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=31.6
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 71 (136)
.+.++...++..++++-+.|..+++|++.++.++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677788888899999999999999999998877653
No 262
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=82.07 E-value=3.2 Score=29.63 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=36.2
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-----C-C-CceeEEEEccCCCEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-----C-G-QPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----h-~-~~v~~v~~sp~~~~l~s 92 (136)
.+..++|||++.+.+. .+|.+.-.+..+......+.. . . ....++.|.|+|.+.++
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav 104 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV 104 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe
Confidence 6779999998886655 667777666544222111111 0 0 12588999999999887
No 263
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=81.61 E-value=7 Score=27.95 Aligned_cols=57 Identities=11% Similarity=0.143 Sum_probs=42.3
Q ss_pred ceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccC-CCceeEEEEccCCCEEEE
Q 041215 35 SVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRC-GQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s 92 (136)
.++.++|+|++..| +....++.|...|.. +..+..+.-. ....-.|++.+++.++++
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEE
Confidence 79999999987644 446667888888987 7777766422 256778899888876664
No 264
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=80.99 E-value=15 Score=27.49 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=40.6
Q ss_pred ceeEEEEeCCCCEEEE-EcCCCcEEEEeCCC-cce--eeecccCCCceeEEEEcc-CCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFAT-AGSDGAFNFWDKDS-KQR--LKAMSRCGQPIPCSTFNT-DGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s-~~~dg~v~vwd~~~-~~~--~~~~~~h~~~v~~v~~sp-~~~~l~s~~ 94 (136)
..+.++|+|+++.|+. -+..+.|..|++.. +.. ...+ ...+....+++.+ +|.+++++.
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence 5689999999965554 44567899998863 322 1233 2246678899999 599888654
No 265
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=79.71 E-value=21 Score=28.26 Aligned_cols=62 Identities=5% Similarity=0.011 Sum_probs=38.9
Q ss_pred EEEeeCCCCcceeEEEeeeC----CCCccceeEEEEeCCC---CEEEEEcCCCcEEEEeCCCcceeeec
Q 041215 10 VHHLDDSQQSKNFTFKCHRD----GSEIYSVNSLNFHPIH---HTFATAGSDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~h~~----~~~~~~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~~~~~~~~ 71 (136)
++-+|..+++.+..++.... ........-+....+| ..++.++.+|.+.++|..+|+.+..+
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 55688999998888764210 0000011112333466 35778888999999999999877554
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=78.11 E-value=19 Score=27.36 Aligned_cols=59 Identities=8% Similarity=0.017 Sum_probs=39.2
Q ss_pred ceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeec-cc-CCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAM-SR-CGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~-h~~~v~~v~~sp~~~~l~s~ 93 (136)
....++++| ++.++++-..++.|+.++..++.....+ .. ....-..|+|+|++..|..+
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 456789999 6777777777788999998876552222 11 12233479999999844434
No 267
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=77.95 E-value=27 Score=28.46 Aligned_cols=59 Identities=7% Similarity=0.099 Sum_probs=40.5
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc----cCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS----RCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~----~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.|.++...+++.+|-.|..++-|.+||..++....-.. .....|.++...+++.+.+..
T Consensus 407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence 68888888888834445555568999988765432211 234678999999989877643
No 268
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=77.35 E-value=20 Score=26.76 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=40.7
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeec----ccCCCceeEEEEccC----CCEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAM----SRCGQPIPCSTFNTD----GSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~----~~h~~~v~~v~~sp~----~~~l~s 92 (136)
....|+|.|+|.++++-...|.|.+++..++.. +..+ .....-.+.|+|+|+ +.++++
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 668999999999888887689899887655543 2212 122456789999995 555553
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=76.87 E-value=12 Score=28.52 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=39.6
Q ss_pred ceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....++|+|+ ...|+.+...+.|+.++..++.... +.........|+|++++.++++-
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad 199 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVD 199 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEc
Confidence 4568999985 3334444333789999987776543 33344568899999999966654
No 270
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=76.24 E-value=15 Score=29.65 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=39.9
Q ss_pred eeEEEEeCCCCEEEEEcCCC------------cEEEEeCCCcceeeecccC-CCceeEEEEccCCCEEEEE
Q 041215 36 VNSLNFHPIHHTFATAGSDG------------AFNFWDKDSKQRLKAMSRC-GQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 36 v~~l~~~p~~~~l~s~~~dg------------~v~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~ 93 (136)
...|.|+|.|.++++-..+. .+.+.+..+++...-+..+ .+.++.++|+|+++.|...
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 46799999999887766431 2334455566654444444 5899999999999876654
No 271
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.86 E-value=2.8 Score=36.24 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=30.5
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 71 (136)
.+.+++..++..++++-+.|+.+++|++.++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3455667778899999999999999999999887653
No 272
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=75.35 E-value=23 Score=26.47 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=40.7
Q ss_pred ceeEEEEeCCCCEEEEEcCC-CcEEEEeCCCcceeeecc------cCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGSD-GAFNFWDKDSKQRLKAMS------RCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~------~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
.+..++..++|+..++++.. +.|...+.. +..+..+- ....-.+.|+++|++.+|+....
T Consensus 138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~ 204 (334)
T 2p9w_A 138 GVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG 204 (334)
T ss_dssp EEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred CCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence 47889999999999988877 766655544 22222211 11233679999999998887655
No 273
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=75.35 E-value=31 Score=27.84 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=43.2
Q ss_pred eceEEEEEeeCCCCcceeEEEeeeCCCC--------------------------ccceeEEEEeCCCCEEEEEcCCC---
Q 041215 5 EGRVGVHHLDDSQQSKNFTFKCHRDGSE--------------------------IYSVNSLNFHPIHHTFATAGSDG--- 55 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~--------------------------~~~v~~l~~~p~~~~l~s~~~dg--- 55 (136)
+|.|.. +|..+++.+..+........ ......+++.|...+++.+..++
T Consensus 177 ~g~v~a--~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w 254 (668)
T 1kv9_A 177 RGFVSA--YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPW 254 (668)
T ss_dssp BCEEEE--EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESS
T ss_pred CCEEEE--EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcc
Confidence 455544 99999999888763211000 00112478888888887777665
Q ss_pred ----------------cEEEEeCCCcceeeecc
Q 041215 56 ----------------AFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 56 ----------------~v~vwd~~~~~~~~~~~ 72 (136)
.|..+|..+|+.+-.+.
T Consensus 255 ~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 255 NREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred ccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 38999999998876554
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=74.54 E-value=32 Score=27.61 Aligned_cols=62 Identities=8% Similarity=0.063 Sum_probs=39.8
Q ss_pred EEEEeeCCCCcceeEEEeeeC----CCCc-cceeEEEEe-CCC---CEEEEEcCCCcEEEEeCCCcceeeec
Q 041215 9 GVHHLDDSQQSKNFTFKCHRD----GSEI-YSVNSLNFH-PIH---HTFATAGSDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~----~~~~-~~v~~l~~~-p~~---~~l~s~~~dg~v~vwd~~~~~~~~~~ 71 (136)
.++-+|+.+++....++.... .... .++ -+... .+| ..++.++.+|.+.++|..+|+.+...
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 355689999999888764221 0000 011 12222 467 46788889999999999999877544
No 275
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=73.76 E-value=28 Score=26.73 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=39.0
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeeccc------CCCceeEEEEccC----CCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAMSR------CGQPIPCSTFNTD----GSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~------h~~~v~~v~~sp~----~~~l~s~ 93 (136)
....|+|.|+|+++++-...+.|.+++..++.. +..+.. ...-+..|+|+|+ +.++++-
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 567999999999888876656788777654432 222221 1345679999994 5555543
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=73.69 E-value=11 Score=28.61 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=38.8
Q ss_pred ceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
....++++| +...|+.+...+.|..+|...+... .+.........|+|++++..|..+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEe
Confidence 457899998 3544444444477888998775543 3333445678999999999444443
No 277
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=73.36 E-value=26 Score=28.41 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=40.4
Q ss_pred ceeEEEEeCCCCEEEEEcCC------------CcEEEEeCCCcceeeecccC-CCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSD------------GAFNFWDKDSKQRLKAMSRC-GQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~d------------g~v~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~ 93 (136)
....|.|.++|.+.++.... ..+..++..+++....+... ...++.++|+||++.|..+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45789999999988854321 14555566667654444433 4678999999999876665
No 278
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=73.02 E-value=12 Score=29.48 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=39.6
Q ss_pred ceeEEEEeCC-CCEEEEEcCCCcEEEEeCC-------Ccce-----------eee-cc-cCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPI-HHTFATAGSDGAFNFWDKD-------SKQR-----------LKA-MS-RCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~-~~~l~s~~~dg~v~vwd~~-------~~~~-----------~~~-~~-~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....++++|+ +.++++-...+.|..+|+. ++.. ... +. ........|+|+|++..+..+
T Consensus 248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYva 327 (496)
T 3kya_A 248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFG 327 (496)
T ss_dssp CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEE
Confidence 4568899995 4667777778889999987 4443 111 11 123456799999999854434
Q ss_pred E
Q 041215 94 V 94 (136)
Q Consensus 94 ~ 94 (136)
.
T Consensus 328 D 328 (496)
T 3kya_A 328 V 328 (496)
T ss_dssp E
T ss_pred e
Confidence 3
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=72.12 E-value=28 Score=25.88 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=36.3
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....+++.+.+ .++++-...+.|.+.++........+.........|+++|.+..+..+
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~t 219 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT 219 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEe
Confidence 34678888765 455666666778888876443322333333567889999866544433
No 280
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=71.78 E-value=24 Score=25.02 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=38.2
Q ss_pred ceeEEEEeC-CCCEEEEEcC-----------------CCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHP-IHHTFATAGS-----------------DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p-~~~~l~s~~~-----------------dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....+++.+ +|.++++-.. ++.|..||..++...... ......+.|+|++++..+..+
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~ 202 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVA 202 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEE
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEE
Confidence 467899999 9988777543 356888887766532221 112345789999999855544
No 281
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=70.47 E-value=29 Score=25.43 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=37.0
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeecc---cCCCceeEEEEccC----CCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAMS---RCGQPIPCSTFNTD----GSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~---~h~~~v~~v~~sp~----~~~l~s~ 93 (136)
....++|.|+|+++++-. .+.|.+++ ++.. +..+. ........|+|+|+ +.++++-
T Consensus 32 ~P~~ia~~pdG~l~V~e~-~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAER-PGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CEEEEEECTTSCEEEEET-TTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCeEEEEeC-CCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 567999999999777654 58898888 3332 22221 12356789999998 4455543
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=70.42 E-value=11 Score=30.21 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=38.7
Q ss_pred EEEEeC-CCCEEEEEcCCC-----------cEEEEeCCCccee--eeccc-CCCceeEEEEccCCCEEEEEEcc
Q 041215 38 SLNFHP-IHHTFATAGSDG-----------AFNFWDKDSKQRL--KAMSR-CGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 38 ~l~~~p-~~~~l~s~~~dg-----------~v~vwd~~~~~~~--~~~~~-h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
.+++.+ ++.+++.|+.+. .+.+||..++... ..+.. +...+.++++..++.+++.|+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 567777 778888876542 4788998775432 22222 33445568888999999988643
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=70.31 E-value=26 Score=24.89 Aligned_cols=90 Identities=7% Similarity=0.003 Sum_probs=54.7
Q ss_pred EEEEeeCCCCcceeEEEe-eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce---eeecc------cCCCce
Q 041215 9 GVHHLDDSQQSKNFTFKC-HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR---LKAMS------RCGQPI 78 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~-h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~------~h~~~v 78 (136)
.|+.+|.. ++....+.- -.. ....|++.+++.++++.-.++.+.++++..... +.... ..+...
T Consensus 50 ~I~~ld~~-g~v~~~i~l~g~~-----D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~ 123 (255)
T 3qqz_A 50 AIVEMTTN-GDLIRTIPLDFVK-----DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGF 123 (255)
T ss_dssp EEEEEETT-CCEEEEEECSSCS-----SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCC
T ss_pred eEEEEeCC-CCEEEEEecCCCC-----ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCc
Confidence 34456666 555555431 113 567899998888777766677888888764321 22221 123446
Q ss_pred eEEEEccCCCEEEEEEcccccccccc
Q 041215 79 PCSTFNTDGSIFAYSVCYDWSKGAEN 104 (136)
Q Consensus 79 ~~v~~sp~~~~l~s~~~dd~~~~~~~ 104 (136)
-.|+|+|.+..|.++..-+....+.+
T Consensus 124 EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 124 EGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp EEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred ceEEEeCCCCEEEEEECcCCceEEEE
Confidence 79999999876665655554333333
No 284
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=69.93 E-value=29 Score=25.32 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=36.7
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEE
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 91 (136)
....+++.+.+ .++++-...+.|.+.+.........+.......+.|+++|.+..+.
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEE
Confidence 45688998755 5556666677899988765433222333345678999998655443
No 285
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=69.75 E-value=30 Score=25.29 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=35.4
Q ss_pred ceeEEEEeCCCC-EEEEEcCC-CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHH-TFATAGSD-GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~-~l~s~~~d-g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....++++|.+. ++++-... +.|..+++................+.|+++|++..|..+
T Consensus 160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~a 220 (349)
T 3v64_C 160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV 220 (349)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEE
T ss_pred CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEE
Confidence 568899998665 44444444 678887776432222222233566889999866544444
No 286
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=69.53 E-value=31 Score=25.39 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=37.4
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc-eeeecc---cCCCceeEEEEccC----CCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ-RLKAMS---RCGQPIPCSTFNTD----GSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~---~h~~~v~~v~~sp~----~~~l~s~ 93 (136)
....++|.|+++++++-. ++.|.+++ .++. .+..+. ........|+|+|+ +.++++-
T Consensus 30 ~P~~ia~~pdG~l~V~e~-~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTER-PGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp CEEEEEEEETTEEEEEET-TTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeC-CCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 568999999998776654 48888887 3443 222221 12346789999997 5555543
No 287
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=68.21 E-value=47 Score=26.98 Aligned_cols=57 Identities=4% Similarity=-0.031 Sum_probs=39.4
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc------cCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS------RCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~------~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.|.++...+++.+.+... .| |.+|+..++....... .....|.++...+++.+.+..
T Consensus 453 ~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 453 NVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp CEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred eeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence 688888888888776665 44 8888987764432211 123678999999999877743
No 288
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=67.96 E-value=14 Score=26.37 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=39.1
Q ss_pred eEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc------cCC-CceeEEEEccCCCEEEEEEccc
Q 041215 37 NSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS------RCG-QPIPCSTFNTDGSIFAYSVCYD 97 (136)
Q Consensus 37 ~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~------~h~-~~v~~v~~sp~~~~l~s~~~dd 97 (136)
.++.|.|+|.+.++ .||.|+-++-.+...-..+. .+. ..+..|.|.|+|.+.+.. +..
T Consensus 91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 68899999998877 55888877753321111111 111 567999999999999877 443
No 289
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=67.48 E-value=35 Score=25.28 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=34.9
Q ss_pred ceeEEEEeCCCCEE-EEEcCC-CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTF-ATAGSD-GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l-~s~~~d-g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....+++.|.+..| ++-... +.|..+++................+.|+|+|++..|..+
T Consensus 203 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 203 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEE
T ss_pred CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEE
Confidence 56889999877544 444334 678877765432222222233456889999765544444
No 290
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=67.44 E-value=36 Score=25.42 Aligned_cols=60 Identities=15% Similarity=0.015 Sum_probs=37.0
Q ss_pred ceeEEEEeCCCCEEEEEcC---C------------CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGS---D------------GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~---d------------g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
..+.+.+.++|.++++..- | ..-.+|.+..+.. ..+...-...+.|+|+|+++.+..+..
T Consensus 166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~-~~~~~~l~~pNGia~spDg~~lYvadt 240 (355)
T 3sre_A 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAEL 240 (355)
T ss_dssp SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC-EEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE-EEeecCCcccCcceECCCCCEEEEEeC
Confidence 5789999999998887651 1 1223333333322 222222345689999999987766544
No 291
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=62.83 E-value=12 Score=31.04 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=27.6
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM 71 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 71 (136)
.|.++.+ +..++++-+.|..+++|++.+++++.+.
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 3555544 3679999999999999999999876554
No 292
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=62.44 E-value=40 Score=24.10 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=36.5
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEE
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 91 (136)
....+++.+.+ .++++-...+.|.+++.........+.........++++|.+..+.
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEE
Confidence 45788998755 5556666678899998875433222222335678999998655443
No 293
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=61.83 E-value=44 Score=24.45 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=36.3
Q ss_pred ceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcce---eeecc----cCCCceeEEEEccC----CCEEEE
Q 041215 35 SVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQR---LKAMS----RCGQPIPCSTFNTD----GSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~---~~~~~----~h~~~v~~v~~sp~----~~~l~s 92 (136)
....|+|.|+|+ ++++- ..|.|.+++.. +.. +..+. ........|+|+|+ +.++++
T Consensus 19 ~P~~i~~~pdG~~l~V~e-~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITL-RGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SEEEEEECSTTCCEEEEE-TTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CcEEEEEcCCCCEEEEEe-CCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 668999999998 77665 56888888743 322 11111 12345689999995 555554
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=61.74 E-value=48 Score=24.77 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=42.8
Q ss_pred ceeEEEE---eCCCCEEEEEcC-------------CCcEEEEeCC---Ccceeeecc--cC-----------CCceeEEE
Q 041215 35 SVNSLNF---HPIHHTFATAGS-------------DGAFNFWDKD---SKQRLKAMS--RC-----------GQPIPCST 82 (136)
Q Consensus 35 ~v~~l~~---~p~~~~l~s~~~-------------dg~v~vwd~~---~~~~~~~~~--~h-----------~~~v~~v~ 82 (136)
.+..|.| .|+++++++... +..|..||+. +++.+.... .. ...++.|+
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva 143 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA 143 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence 4689999 688877775431 5678899998 665543222 11 13478999
Q ss_pred EccCCCEEEEEEcc
Q 041215 83 FNTDGSIFAYSVCY 96 (136)
Q Consensus 83 ~sp~~~~l~s~~~d 96 (136)
..++|..+++++..
T Consensus 144 vD~~GnaYVt~s~~ 157 (334)
T 2p9w_A 144 QDRDGNSYVAFALG 157 (334)
T ss_dssp ECTTSCEEEEEEES
T ss_pred ECCCCCEEEeCCCC
Confidence 99999988876543
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=61.56 E-value=40 Score=26.51 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=39.8
Q ss_pred eeEEEEeCC-C-CEEEEEcCCCcEEEEeCCCcceeeecccC---CCceeEEEE-------ccCCCEEEEEEcc
Q 041215 36 VNSLNFHPI-H-HTFATAGSDGAFNFWDKDSKQRLKAMSRC---GQPIPCSTF-------NTDGSIFAYSVCY 96 (136)
Q Consensus 36 v~~l~~~p~-~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h---~~~v~~v~~-------sp~~~~l~s~~~d 96 (136)
...|+|.|. . +++++......|++.|...+......... ......|+| ++++..+..+...
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 568999984 4 55555554567888898876654333221 235789999 9999855545443
No 296
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=59.28 E-value=53 Score=24.50 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=37.3
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEE
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 91 (136)
....+++.+.+ .++++-...+.|.+.++........+.........|+++|.+..+.
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly 217 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 217 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEE
Confidence 46788998755 5566666677899888875543333333345578899998654444
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=57.62 E-value=18 Score=29.47 Aligned_cols=57 Identities=7% Similarity=-0.083 Sum_probs=30.6
Q ss_pred ceeEEEEeCCCCEEEEEcC-C-CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEE
Q 041215 35 SVNSLNFHPIHHTFATAGS-D-GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~-d-g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 91 (136)
....|++.|.+..|+-... . +.|..+++................+.|+|+|++..|.
T Consensus 497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY 555 (699)
T 1n7d_A 497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 555 (699)
T ss_dssp CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEE
T ss_pred CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEE
Confidence 4567888886644433332 2 5677766543221111112234567899998754433
No 298
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=56.49 E-value=59 Score=26.33 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=38.4
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-----CCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-----GQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~l~s~ 93 (136)
.|.++...+++.+.+... +-|.+||..++......... ...|.++...+++.+.+..
T Consensus 451 ~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp CEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred eEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence 678888888877666554 44888888765432221111 4678999999999877743
No 299
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=56.11 E-value=52 Score=23.46 Aligned_cols=58 Identities=7% Similarity=-0.032 Sum_probs=34.4
Q ss_pred ceeEEEEeCCCCEEEEEcC-C-CcEEEEeCCCcceeeec-ccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGS-D-GAFNFWDKDSKQRLKAM-SRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~-d-g~v~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....++++|.+..|+-+.. . +.|..+++.. .....+ ...-...+.|++++++..|..+
T Consensus 121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEE
Confidence 5678999987654443333 2 6787777653 222222 2223567889999876554444
No 300
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=55.91 E-value=61 Score=24.16 Aligned_cols=59 Identities=7% Similarity=-0.067 Sum_probs=35.3
Q ss_pred ceeEEEEeCCCCEEEEEcC--CCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGS--DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....|++.|.+..|+-... .+.|...++............-...+.|++++++..|..+
T Consensus 203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence 5688999997654444432 3678887776433222222223567888888766555444
No 301
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=54.47 E-value=68 Score=25.41 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=40.1
Q ss_pred EEEeeCCCCcceeEEEe--eeC--CCCccceeEEEEe-CCCC---EEEEEcCCCcEEEEeCCCcceeeecc
Q 041215 10 VHHLDDSQQSKNFTFKC--HRD--GSEIYSVNSLNFH-PIHH---TFATAGSDGAFNFWDKDSKQRLKAMS 72 (136)
Q Consensus 10 i~~~d~~~~~~~~~l~~--h~~--~~~~~~v~~l~~~-p~~~---~l~s~~~dg~v~vwd~~~~~~~~~~~ 72 (136)
+.-+|+.+++.+..++. |.. ........-+... .+|+ .++.++.+|.++++|..+|+.+..+.
T Consensus 293 v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 293 QVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 45589999999988764 211 0000011112222 4663 78889999999999999998876543
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=50.12 E-value=1.1e+02 Score=25.44 Aligned_cols=59 Identities=7% Similarity=-0.067 Sum_probs=34.6
Q ss_pred ceeEEEEeCCCCEEEEEcC--CCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGS--DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....|++.|....|+-... .+.|...++........+.......+.|++++....|..+
T Consensus 515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwa 575 (791)
T 3m0c_C 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 575 (791)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEE
Confidence 5779999997654444432 2668877776433322222233567788888665544444
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=47.24 E-value=91 Score=23.64 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=36.9
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF 83 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 83 (136)
-..++..++....++.-..-|.+++||++++.++..-+-....|...+.
T Consensus 261 FPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~ 309 (365)
T 2xzh_A 261 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 309 (365)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred ceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecc
Confidence 3457788888888888889999999999999988766555555544333
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=46.18 E-value=68 Score=23.39 Aligned_cols=60 Identities=8% Similarity=0.044 Sum_probs=37.5
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce------eeecccCCCceeEEEEccCCCEEEEEEc
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR------LKAMSRCGQPIPCSTFNTDGSIFAYSVC 95 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~------~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 95 (136)
....++| .++.++++.-..+.|...++..... ...+-.....+..|++.|+|.++++...
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence 3456777 4566776666666777766653321 1222122367899999999998886533
No 305
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=45.86 E-value=1.3e+02 Score=25.02 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=37.4
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEE
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 91 (136)
....|++.+.+ +++++-...+.|.+.++........+.........|+++|....|.
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LY 529 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 529 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEE
Confidence 46789998877 4555666667899999875443333333345678999998744433
No 306
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=45.63 E-value=21 Score=26.62 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=37.7
Q ss_pred CCceeceEEEEEeeCCCCcceeEEEeee-CCCCccceeEEEEe--C-CCCEEEEE-cCCCcEEEEeCCCccee
Q 041215 1 VGSIEGRVGVHHLDDSQQSKNFTFKCHR-DGSEIYSVNSLNFH--P-IHHTFATA-GSDGAFNFWDKDSKQRL 68 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~-~~~~~~~v~~l~~~--p-~~~~l~s~-~~dg~v~vwd~~~~~~~ 68 (136)
|++.||.+.. +|..+++....+.... . ++....-. + ++..++.. ..||.|..++..+|...
T Consensus 15 v~t~dG~l~A--ld~~tG~~~W~~~~~~~~-----p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 15 AADVEGGLHA--VDRRNGHIIWSIEPENFQ-----PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEETTSCEEE--EETTTTEEEEEECGGGSC-----CSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred EEeCCCeEEE--EECCCCcEEEEecCCccC-----CcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 4678888866 8999999999987541 2 22221110 1 22233333 57899999998887543
No 307
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=42.84 E-value=91 Score=22.40 Aligned_cols=59 Identities=7% Similarity=-0.038 Sum_probs=33.8
Q ss_pred ceeEEEEeCCCCEEEEEc--CCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAG--SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
....+++.|.+..|+-.. ..+.|...++.-..........-...+.|++++++..|..+
T Consensus 123 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEE
Confidence 567899998765444444 24677777765322211112223456888998865544444
No 308
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=38.17 E-value=1.5e+02 Score=23.67 Aligned_cols=58 Identities=5% Similarity=0.016 Sum_probs=36.3
Q ss_pred ceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC-CCEEEE
Q 041215 35 SVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD-GSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s 92 (136)
....+++.+.+. ++++-...+.|.+.++........+.........|++.|. |.++.+
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence 467888887664 5555555678999888654322222233356689999985 444443
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.46 E-value=1.5e+02 Score=23.41 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=37.0
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF 83 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 83 (136)
-..++..++....++....-|.+++||++++.++..-+-....|...+.
T Consensus 260 FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~ 308 (494)
T 1bpo_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 308 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred ceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecc
Confidence 3457888888888888889999999999999888765544455544333
No 310
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=37.05 E-value=1.1e+02 Score=21.86 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=35.7
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEE
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 91 (136)
....+++.+.+ .++++-...+.|.+++.........+.........|++.|.+..+.
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly 137 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY 137 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEE
Confidence 45678888755 5566666677899998765332222223345668889988644433
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=35.47 E-value=1.1e+02 Score=21.12 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=26.3
Q ss_pred CCCEEEEEcCC-----CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 44 IHHTFATAGSD-----GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 44 ~~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
++.+++.|+.+ ..+.+||..+..-...-..........+...++.+++.|+.+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYD 263 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcC
Confidence 45667777654 458889988754322111111111111222366677766543
No 312
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=34.92 E-value=1.8e+02 Score=23.46 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=38.5
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc----CCCceeEEEEccCCCEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR----CGQPIPCSTFNTDGSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~v~~sp~~~~l~s 92 (136)
.|.++...+++.+.+.....| |..||..++... .+.. ....|.++...+++.+.+.
T Consensus 496 ~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 496 FVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp CEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred eeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEE
Confidence 688888888888776654455 677887665432 2221 2467899999999987764
No 313
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=34.43 E-value=1.2e+02 Score=21.22 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCC-----cEEEEeCCCcceee--ecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 44 IHHTFATAGSDG-----AFNFWDKDSKQRLK--AMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 44 ~~~~l~s~~~dg-----~v~vwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
++.+++.|+.++ .+.+||..+..-.. .+.........+. -++.+++.|+.+
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~ 253 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFA 253 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCcc
Confidence 456677776543 47788887653322 1111111112222 366777776654
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=33.98 E-value=1.8e+02 Score=23.25 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=39.2
Q ss_pred ceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeec-ccCCCceeEEEEcc-CCCEEEEE
Q 041215 35 SVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPIPCSTFNT-DGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~sp-~~~~l~s~ 93 (136)
.+..+++...+. ++.+-+..+.|.+.++. |.....+ .......+.|++.| .+.++.+-
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD 450 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTN 450 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEee
Confidence 567899998875 55566667889998875 4333333 23346688999998 56666553
No 315
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=33.00 E-value=1.9e+02 Score=23.11 Aligned_cols=58 Identities=7% Similarity=0.016 Sum_probs=37.1
Q ss_pred ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC-CCEEEE
Q 041215 35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD-GSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s 92 (136)
.+..+++...+ +++.+-+..+.|.+.++........+.........|++.|. |.++.+
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEE
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEe
Confidence 56789998755 45666566678999887654322222223456789999986 555554
No 316
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=32.10 E-value=1.7e+02 Score=22.46 Aligned_cols=57 Identities=7% Similarity=0.108 Sum_probs=35.2
Q ss_pred ceeEEEEeCCCC--EEEEEcCCCcEEEEeCCCcc---eeeeccc---------CCCceeEEEEccC----CCEEEE
Q 041215 35 SVNSLNFHPIHH--TFATAGSDGAFNFWDKDSKQ---RLKAMSR---------CGQPIPCSTFNTD----GSIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~--~l~s~~~dg~v~vwd~~~~~---~~~~~~~---------h~~~v~~v~~sp~----~~~l~s 92 (136)
....|+|.|++. +|++ ...|.|++++..... .+..+.. ...-+..|+|+|+ +.++++
T Consensus 15 ~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 567999999995 5555 467889988643211 1111110 1245788999996 555554
No 317
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=32.07 E-value=38 Score=27.54 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=33.6
Q ss_pred eeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC-CEEE
Q 041215 36 VNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG-SIFA 91 (136)
Q Consensus 36 v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~ 91 (136)
...|++.+.+ .++++-...+.|.++++........+.......+.|+++|.+ .++.
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~ 512 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYW 512 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEE
Confidence 4567887554 555555556789988877544333332223456788888854 4444
No 318
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=31.99 E-value=1.6e+02 Score=22.07 Aligned_cols=61 Identities=8% Similarity=0.131 Sum_probs=39.8
Q ss_pred ceeEEEE--eCCC-C-EEEEEcCCCcEEEEeCC---C----cceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215 35 SVNSLNF--HPIH-H-TFATAGSDGAFNFWDKD---S----KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96 (136)
Q Consensus 35 ~v~~l~~--~p~~-~-~l~s~~~dg~v~vwd~~---~----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 96 (136)
.+-.+++ +|.. . +++....+|.+..|++. . .+.+.++.. .+.+-.+...+....|..+-.+
T Consensus 129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd 200 (355)
T 3amr_A 129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEED 200 (355)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETT
T ss_pred CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEeccc
Confidence 5556777 6654 3 67788888999999873 2 244555543 3577788888766666655444
No 319
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=29.26 E-value=2.4e+02 Score=23.12 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=36.9
Q ss_pred ceeEEEEeCCCCEEEEEc-CCCcEEEEeCCCcc------e-------eeecccCCCceeEEEEccCCCEEE
Q 041215 35 SVNSLNFHPIHHTFATAG-SDGAFNFWDKDSKQ------R-------LKAMSRCGQPIPCSTFNTDGSIFA 91 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~~~~------~-------~~~~~~h~~~v~~v~~sp~~~~l~ 91 (136)
....+..+|+|.+++.++ .+.++.++++.... . ..+... .--....+|.++|..+.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYT 393 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYT 393 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEe
Confidence 567899999998766665 46789999987321 1 223332 33446689999984333
No 320
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=27.85 E-value=1.6e+02 Score=20.86 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=35.8
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc----cCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS----RCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~----~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
.+..+.+.+++.+++.+ .+|.+.+.+...+..-..+. .....+.+|.+.+++.+++.+.
T Consensus 206 ~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 206 RLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp CEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred ccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence 56778888888766544 56777665422233222221 1223588999998888877653
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=27.36 E-value=3.1e+02 Score=23.90 Aligned_cols=84 Identities=14% Similarity=0.013 Sum_probs=47.9
Q ss_pred CCceeceEEEEEeeCCCCcc-eeEEEee--eC--CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-ccee--eecc
Q 041215 1 VGSIEGRVGVHHLDDSQQSK-NFTFKCH--RD--GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRL--KAMS 72 (136)
Q Consensus 1 vgs~dG~v~i~~~d~~~~~~-~~~l~~h--~~--~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~--~~~~ 72 (136)
+++.+|.+.+..||...+.. ..+..-+ .. .....+-..++..|.|+.++....++.+.++-+.. +..+ ..+.
T Consensus 97 v~td~~~~~il~~d~~~~~~~~~t~~~~~~~~~~~r~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~~l~~~~~~ 176 (1158)
T 3ei3_A 97 ILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIR 176 (1158)
T ss_dssp EEETTCEEEEEEEEC-CCCCEEEEEEEEECCCSSCCBCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCTTCCCEEEE
T ss_pred EEeCCceEEEEEEcCCCCceeEEEEeccccccCccccCCCCCEEEEcCCCCEEEEEeccCEEEEEEecCCcccccccccc
Confidence 36778999999999864432 2222111 11 11111234788899999999998888888876643 1111 1111
Q ss_pred cCCCceeEEEEc
Q 041215 73 RCGQPIPCSTFN 84 (136)
Q Consensus 73 ~h~~~v~~v~~s 84 (136)
-....|.+++|-
T Consensus 177 l~~~~v~d~~fL 188 (1158)
T 3ei3_A 177 LEELHVIDVKFL 188 (1158)
T ss_dssp CSCCCEEEEEEC
T ss_pred cccceEEEEEEe
Confidence 123456777774
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=26.38 E-value=1.6e+02 Score=20.28 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=15.5
Q ss_pred CCCEEEEEcCC------CcEEEEeCCCcc
Q 041215 44 IHHTFATAGSD------GAFNFWDKDSKQ 66 (136)
Q Consensus 44 ~~~~l~s~~~d------g~v~vwd~~~~~ 66 (136)
++.+++.|+.+ ..+.+||..+..
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 55677777654 458888887754
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=25.77 E-value=1.9e+02 Score=20.93 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=38.9
Q ss_pred ceeEEEEeC-------CCCEEEEEcCCCcEEEEeCCCcceeee---cccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHP-------IHHTFATAGSDGAFNFWDKDSKQRLKA---MSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p-------~~~~l~s~~~dg~v~vwd~~~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.+..+.|.. ++.++++.-..+.|...++..+..... +......+..|++.|+|.++++.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 456777753 456777776677777777765433322 22223578999999999987753
No 324
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=24.21 E-value=2.3e+02 Score=21.25 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=36.6
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeCC-----Ccceeeecc-cC-CCceeEEEE--ccCCC-EEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDKD-----SKQRLKAMS-RC-GQPIPCSTF--NTDGS-IFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~-----~~~~~~~~~-~h-~~~v~~v~~--sp~~~-~l~s~~ 94 (136)
.+..|...+....|+.+-.+--|-.++.. ++..+..+. ++ ...+..|++ .++++ +|+.++
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 77888898888888888887545444533 233444432 22 356788888 45555 444444
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=24.08 E-value=2.4e+02 Score=21.45 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=15.3
Q ss_pred ceeEEEEeCCCCEEEEEcC
Q 041215 35 SVNSLNFHPIHHTFATAGS 53 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~ 53 (136)
....|.|.|+|.++++.+.
T Consensus 145 ~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 145 QSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CEEEEEECTTSCEEEEECC
T ss_pred CCCeEeECCCCeEEEEECC
Confidence 3578999999998887664
No 326
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=23.94 E-value=1.6e+02 Score=23.86 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=23.6
Q ss_pred EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEE
Q 041215 9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATA 51 (136)
Q Consensus 9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~ 51 (136)
.++.+++.+++....+.+.. ...++.++|+||++.|+..
T Consensus 510 ~v~~~dp~tGel~~fl~~P~----~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 510 QMLCADPATGEIRRFMVGPI----GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCT----TCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCC----CccccCCEECCCCCEEEEE
Confidence 34556665565555444321 1267899999999766554
No 327
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=23.58 E-value=2.8e+02 Score=22.07 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=37.9
Q ss_pred ceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC-CEEEE
Q 041215 35 SVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG-SIFAY 92 (136)
Q Consensus 35 ~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s 92 (136)
....+++.+.+. ++++-...+.|.+.++........+.........|++.|.+ .++.+
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~t 144 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWT 144 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEe
Confidence 567899998664 55565667889999987543322222334556889998864 45554
No 328
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=22.96 E-value=2.2e+02 Score=20.65 Aligned_cols=60 Identities=7% Similarity=0.009 Sum_probs=39.6
Q ss_pred ceeEEEEe-------CCCCEEEEEcCCCcEEEEeCCCc-cee--eec-ccCCCceeEEEEccCCCEEEEEE
Q 041215 35 SVNSLNFH-------PIHHTFATAGSDGAFNFWDKDSK-QRL--KAM-SRCGQPIPCSTFNTDGSIFAYSV 94 (136)
Q Consensus 35 ~v~~l~~~-------p~~~~l~s~~~dg~v~vwd~~~~-~~~--~~~-~~h~~~v~~v~~sp~~~~l~s~~ 94 (136)
....+.|. .++.++++.-..+.|...++... ... ..+ ..-...+..|++.|+|.++++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 46678883 46667777666677887777642 222 222 22245789999999999888653
No 329
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=22.16 E-value=2.1e+02 Score=20.22 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=35.4
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEEEeC--CCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNFWDK--DSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS 93 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~--~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 93 (136)
.+..+.+.+++.+++.+......+-+|- .+-..+. ......+..+.+++++.+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~ 222 (327)
T 2xbg_A 164 VMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIV 222 (327)
T ss_dssp CEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEE
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEe
Confidence 5778899998888776654443333442 1222221 2334678889999988877654
No 330
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=21.94 E-value=3e+02 Score=22.55 Aligned_cols=27 Identities=4% Similarity=0.204 Sum_probs=22.4
Q ss_pred ccceeEEEEeCCCCEEEEEcCCCcEEE
Q 041215 33 IYSVNSLNFHPIHHTFATAGSDGAFNF 59 (136)
Q Consensus 33 ~~~v~~l~~~p~~~~l~s~~~dg~v~v 59 (136)
..+|..|.++++...|+.++.++.+++
T Consensus 469 ~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 469 PTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp CCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred CceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 337889999999999999988887665
No 331
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=21.93 E-value=2e+02 Score=19.74 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=15.5
Q ss_pred CCCEEEEEcCC-----CcEEEEeCCCcc
Q 041215 44 IHHTFATAGSD-----GAFNFWDKDSKQ 66 (136)
Q Consensus 44 ~~~~l~s~~~d-----g~v~vwd~~~~~ 66 (136)
++.+++.|+.+ ..+.+||..+..
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 45677777654 358889987653
No 332
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.38 E-value=1.5e+02 Score=23.28 Aligned_cols=25 Identities=4% Similarity=0.280 Sum_probs=20.5
Q ss_pred ceeEEEEeCCCCEEEEEcCCCcEEE
Q 041215 35 SVNSLNFHPIHHTFATAGSDGAFNF 59 (136)
Q Consensus 35 ~v~~l~~~p~~~~l~s~~~dg~v~v 59 (136)
+|..|.++++...|..++.++.+++
T Consensus 463 pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 463 TISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp CCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred ccceEEEcCCCCEEEEEECCeEEEE
Confidence 7889999998888888887776554
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=21.23 E-value=2.1e+02 Score=19.79 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=15.6
Q ss_pred CCCEEEEEcCC-----CcEEEEeCCCcc
Q 041215 44 IHHTFATAGSD-----GAFNFWDKDSKQ 66 (136)
Q Consensus 44 ~~~~l~s~~~d-----g~v~vwd~~~~~ 66 (136)
++.+++.|+.+ ..+.+||..+..
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 45667777654 458889987653
No 334
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=21.10 E-value=82 Score=17.89 Aligned_cols=17 Identities=12% Similarity=0.382 Sum_probs=13.6
Q ss_pred eceEEEEEeeCCCCcce
Q 041215 5 EGRVGVHHLDDSQQSKN 21 (136)
Q Consensus 5 dG~v~i~~~d~~~~~~~ 21 (136)
+|.|.|+.||..++...
T Consensus 37 ~g~iKIykyde~tNeI~ 53 (72)
T 3kvp_A 37 DGYIKIYEYNESRNEVK 53 (72)
T ss_dssp TTEEEEEEEETTTTEEE
T ss_pred CCEEEEEEeCCCCCeEE
Confidence 68899999998876553
Done!