BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041217
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 294 bits (753), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 158/358 (44%), Positives = 222/358 (62%), Gaps = 12/358 (3%)
Query: 29 IKGGYWTSRSELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKN 88
+K YW SE PV+ I+S LFTHL CAFA LNS T + ++S + FS+FT TV+R+N
Sbjct: 5 VKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQRRN 64
Query: 89 PSVVTLLSIRGGTA---IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTN 145
PSV TLLSI GG A ++SM + ++RKSFI+SSI AR YGF GLDL PS +T
Sbjct: 65 PSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSATE 124
Query: 146 MTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRA 205
MTN G L EWR+ V +EA +SG +LLL + SV YP+ ++ +LDWV++ A
Sbjct: 125 MTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMA 184
Query: 206 YDYYLPSRDNFTGAHSALYSSSSWFNTNDS-IREWLKTGFPANKLVLGLPYHGYAWQLVN 264
YD+Y P TG +AL+ S+ + D+ R W++ G PA K VLG PY+GYAW+L N
Sbjct: 185 YDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTN 244
Query: 265 PNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWINFD 324
N ++ AP G AI+ DGS+GY I+ FI D G ++YN + ++ +G NWI +D
Sbjct: 245 ANSHSYYAPTTGAAISPDGSIGYGQIRKFIVD--NGATTVYNSTVVGDYCYAGTNWIGYD 302
Query: 325 GAEAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQLLITYNSYDQSFSTKRSFE 382
++I KV +AK++GLLGY ++ + DD LS A Q ++D + +T R+ +
Sbjct: 303 DNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQ------AWDATTATTRTIQ 354
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 212/342 (61%), Gaps = 9/342 (2%)
Query: 29 IKGGYWTSRSELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKN 88
+KGGYW S L ++ I+S LFTHL CAFA LN L I+ + SF FT+TV+RKN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 89 PSVVTLLSIRGGTA---IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTN 145
PSV T LSI GG A + M Q ++RKSFI+SSI AR GF GLDL P + +
Sbjct: 64 PSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAAD 123
Query: 146 MTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRA 205
MTNLG L +EWR + +EARNSG + LLL + P ++ + YP++S+ RNLDW+++ A
Sbjct: 124 MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMA 183
Query: 206 YDYYLPS-RDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVN 264
YD+Y P+ + T +H+ L+ + + +D I W++ G P KLVLG+P++GYAW+LVN
Sbjct: 184 YDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVN 243
Query: 265 PNENAVGAPAAGPA---ITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWI 321
N + + APAAG + DGSM Y I+ +I + ++YN + ++ SG NWI
Sbjct: 244 ANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGSNWI 301
Query: 322 NFDGAEAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQ 363
++D + + KV++ K +GLLGY A+ ++ D W LS Q
Sbjct: 302 SYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQ 343
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 212/342 (61%), Gaps = 9/342 (2%)
Query: 29 IKGGYWTSRSELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKN 88
+KGGYW S L ++ I+S LFTHL CAFA LN L I+ + SF FT+TV+RKN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 89 PSVVTLLSIRGGTA---IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTN 145
PSV T LSI GG A + M Q ++RKSFI+SSI AR GF GLDL P + +
Sbjct: 64 PSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAAD 123
Query: 146 MTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRA 205
MTNLG L +EWR + +EARNSG + LLL + P ++ + YP++S+ RNLDW+++ A
Sbjct: 124 MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMA 183
Query: 206 YDYYLPS-RDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVN 264
YD+Y P+ + T +H+ L+ + + +D I W++ G P KLVLG+P++GYAW+LVN
Sbjct: 184 YDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVN 243
Query: 265 PNENAVGAPAAGPA---ITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWI 321
N + + APAAG + DGSM Y I+ +I + ++YN + ++ SG NWI
Sbjct: 244 ANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGSNWI 301
Query: 322 NFDGAEAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQ 363
++D + + KV++ K +GLLGY A+ ++ D W LS Q
Sbjct: 302 SYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQ 343
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 172/351 (49%), Gaps = 38/351 (10%)
Query: 26 TSWIKGGYWTSRSELPVSQINSGLFTHLTCAFAYLNSSTF--TLYINSTYEKSFSSFTNT 83
T+W + Y + ++ L THL AFA + + T + + T + F N
Sbjct: 8 TNWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEF----NG 61
Query: 84 VKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLP 140
+K+ NP + TLL+I G GT F+ MV ++NR++F+ S+I R Y F GLDL P
Sbjct: 62 LKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 141 ----SKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVT---YPIDS 193
S + + L + EA+ SG +LLL S +PA + Y +D
Sbjct: 122 GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLL---SAAVPAGQTYVDAGYEVDK 178
Query: 194 MLRNLDWVHVRAYDYYLPSRDNFTGAHSALYS------SSSWFNTNDSIREWLKTGFPAN 247
+ +NLD+V++ AYD++ S + TG +S LY +++ N + ++++WL+ G PA+
Sbjct: 179 IAQNLDFVNLMAYDFH-GSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPAS 237
Query: 248 KLVLGLPYHGYAWQLVNPNENAVGAPAA-----GPAITMDGSMGYKSIKAFIRDYGYGVA 302
KL+LG+P +G ++ L + ++ VGAPA GP G + Y + ++ G
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-----KGAT 292
Query: 303 SLYNDSYDVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
V + W+ FD E+ KVS+ K+KGL G + L DD
Sbjct: 293 KQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 172/351 (49%), Gaps = 38/351 (10%)
Query: 26 TSWIKGGYWTSRSELPVSQINSGLFTHLTCAFAYLNSSTF--TLYINSTYEKSFSSFTNT 83
T+W + Y + ++ L THL AFA + + T + + T + F N
Sbjct: 8 TNWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEF----NG 61
Query: 84 VKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLP 140
+K+ NP + TLL+I G GT F+ MV ++NR++F+ S+I R Y F GLDL P
Sbjct: 62 LKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 141 ----SKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVT---YPIDS 193
S + + L + EA+ SG +LLL S +PA + Y +D
Sbjct: 122 GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLL---SAAVPAGQTYVDAGYEVDK 178
Query: 194 MLRNLDWVHVRAYDYYLPSRDNFTGAHSALYS------SSSWFNTNDSIREWLKTGFPAN 247
+ +NLD+V++ AYD++ S + TG +S LY +++ N + ++++WL+ G PA+
Sbjct: 179 IAQNLDFVNLMAYDFH-GSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPAS 237
Query: 248 KLVLGLPYHGYAWQLVNPNENAVGAPAA-----GPAITMDGSMGYKSIKAFIRDYGYGVA 302
KL+LG+P +G ++ L + ++ VGAPA GP G + Y + ++ G
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-----KGAT 292
Query: 303 SLYNDSYDVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
V + W+ FD E+ KVS+ K+KGL G + L DD
Sbjct: 293 KQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 172/351 (49%), Gaps = 38/351 (10%)
Query: 26 TSWIKGGYWTSRSELPVSQINSGLFTHLTCAFAYLNSSTF--TLYINSTYEKSFSSFTNT 83
T+W + Y + ++ L THL AFA + + T + + T + F N
Sbjct: 8 TNWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEF----NG 61
Query: 84 VKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLP 140
+K+ NP + TLL+I G GT F+ MV ++NR++F+ S+I R Y F GLDL P
Sbjct: 62 LKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 141 ----SKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVT---YPIDS 193
S + + L + EA+ SG +LLL S +PA + Y +D
Sbjct: 122 GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLL---SAAVPAGQTYVDAGYEVDK 178
Query: 194 MLRNLDWVHVRAYDYYLPSRDNFTGAHSALYS------SSSWFNTNDSIREWLKTGFPAN 247
+ +NLD+V++ AYD++ S + TG +S LY +++ N + ++++WL+ G PA+
Sbjct: 179 IAQNLDFVNLMAYDFH-GSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPAS 237
Query: 248 KLVLGLPYHGYAWQLVNPNENAVGAPAA-----GPAITMDGSMGYKSIKAFIRDYGYGVA 302
KL+LG+P +G ++ L + ++ VGAPA GP G + Y + ++ G
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-----KGAT 292
Query: 303 SLYNDSYDVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
V + W+ FD E+ KVS+ K+KGL G + L DD
Sbjct: 293 KQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 172/351 (49%), Gaps = 38/351 (10%)
Query: 26 TSWIKGGYWTSRSELPVSQINSGLFTHLTCAFAYLNSSTF--TLYINSTYEKSFSSFTNT 83
T+W + Y + ++ L THL AFA + + T + + T + F N
Sbjct: 8 TNWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEF----NG 61
Query: 84 VKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLP 140
+K+ NP + TLL+I G GT F+ MV ++NR++F+ S+I R Y F GLDL P
Sbjct: 62 LKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 141 ----SKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVT---YPIDS 193
S + + L + EA+ SG +LLL S +PA + Y +D
Sbjct: 122 GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLL---SAAVPAGQTYVDAGYEVDK 178
Query: 194 MLRNLDWVHVRAYDYYLPSRDNFTGAHSALYS------SSSWFNTNDSIREWLKTGFPAN 247
+ +NLD+V++ AYD++ S + TG +S LY +++ N + ++++WL+ G PA+
Sbjct: 179 IAQNLDFVNLMAYDFH-GSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPAS 237
Query: 248 KLVLGLPYHGYAWQLVNPNENAVGAPAA-----GPAITMDGSMGYKSIKAFIRDYGYGVA 302
KL+LG+P +G ++ L + ++ VGAPA GP G + Y + ++ G
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-----KGAT 292
Query: 303 SLYNDSYDVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
V + W+ FD E+ KVS+ K+KGL G + L DD
Sbjct: 293 KQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 172/351 (49%), Gaps = 38/351 (10%)
Query: 26 TSWIKGGYWTSRSELPVSQINSGLFTHLTCAFAYLNSSTF--TLYINSTYEKSFSSFTNT 83
T+W + Y + ++ L THL AFA + + T + + T + F N
Sbjct: 8 TNWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEF----NG 61
Query: 84 VKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLP 140
+K+ NP + TLL+I G GT F+ MV ++NR++F+ S+I R Y F GLDL P
Sbjct: 62 LKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 141 ----SKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDS---VTYPIDS 193
S + + L + EA+ SG +LLL S +PA + Y +D
Sbjct: 122 GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLL---SAAVPAGQTYVDAGYEVDK 178
Query: 194 MLRNLDWVHVRAYDYYLPSRDNFTGAHSALYS------SSSWFNTNDSIREWLKTGFPAN 247
+ +NLD+V++ AYD++ S + TG +S LY +++ N + ++++WL+ G PA+
Sbjct: 179 IAQNLDFVNLMAYDFH-GSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPAS 237
Query: 248 KLVLGLPYHGYAWQLVNPNENAVGAPA-----AGPAITMDGSMGYKSIKAFIRDYGYGVA 302
KL+LG+P +G ++ L + ++ VGAPA GP G + Y + ++ G
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-----KGAT 292
Query: 303 SLYNDSYDVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
V + W+ FD E+ KVS+ K+KGL G + L DD
Sbjct: 293 KQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 23/297 (7%)
Query: 82 NTVKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGV 138
NT+K +NP++ TLLS+ G G+ FS + + + +R++FI+S R +GF GLDL+ +
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 139 LPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNL 198
P + + + L E +AE EA+ LL S IDS +Y I + ++L
Sbjct: 120 YPGRR-DKQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVTIDS-SYDIAKISQHL 177
Query: 199 DWVHVRAYDYYLPSRDNFTGAHSALY------SSSSWFNTNDSIREWLKTGFPANKLVLG 252
D++ + YD++ R TG HS L+ S + NT+ ++ L+ G PA+KLV+G
Sbjct: 178 DFISIMTYDFHGAWRGT-TGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMG 236
Query: 253 LPYHGYAWQLVNPNENAVGAPAAGPAI-----TMDGSMGYKSIKAFIRDYGYGVASLYND 307
+P G ++ L + +E VGAP +GP I G++ Y I F+R G V +
Sbjct: 237 IPTFGRSFTLAS-SETGVGAPISGPGIPGRFTKEAGTLAYYEICDFLR--GATVHRILGQ 293
Query: 308 SYDVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQL 364
V + + G W+ +D E++ +KV + K++ L G + L DD ++ S G L
Sbjct: 294 Q--VPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDD-FQGSFCGQDL 347
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 152/329 (46%), Gaps = 28/329 (8%)
Query: 45 INSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFT--NTVKRKNPSVVTLLSIRG--- 99
I+ L THL AFA + ++ T T+E+ + N +K KN + TLL+I G
Sbjct: 25 IDPCLCTHLIYAFAGMQNNEITY----THEQDLRDYEALNGLKDKNTELKTLLAIGGWKF 80
Query: 100 GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLP----SKSTNMTNLGILFDE 155
G A FS+MV+ NR+ FI+S I R Y F GL+L P S + +L E
Sbjct: 81 GPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKE 140
Query: 156 WRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDN 215
R E+ +LLL + + Y I + ++LD++ V YD + P +D
Sbjct: 141 MRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDP-KDG 199
Query: 216 FTGAHSALYSS------SSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENA 269
+TG +S LY S S+ N + I W G + KL++G P +G+ + L +P++
Sbjct: 200 YTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAYGHTFILSDPSKTG 259
Query: 270 VGAP--AAGPA---ITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWINFD 324
+GAP + GP G + Y + F+ + G +++ +V + G W+ +D
Sbjct: 260 IGAPTISTGPPGKYTDESGLLAYYEVCTFLNE---GATEVWDAPQEVPYAYQGNEWVGYD 316
Query: 325 GAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
+ K + K+ L G + L DD
Sbjct: 317 NVRSFKLKAQWLKDNNLGGAVVWPLDMDD 345
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 150/283 (53%), Gaps = 17/283 (6%)
Query: 82 NTVKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGV 138
NT+K +NP + TLLS+ G G FS + +++ +R++FI+S R +GF GLDL+ +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 139 LPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLL-VMKSHHLPAIDSVTYPIDSMLRN 197
P + + +L L E +AE EA+ +G QLLL S AID Y I + R+
Sbjct: 120 YPGRR-DKRHLTTLVKEMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDR-GYDIAQISRH 176
Query: 198 LDWVHVRAYDYYLPSRDNFTGAHSALY-----SSSSWFNTNDSIREWLKTGFPANKLVLG 252
LD++ + YD++ R G HS L+ +SS + N + ++ L+ G PANKLV+G
Sbjct: 177 LDFISLLTYDFHGAWRQT-VGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMG 235
Query: 253 LPYHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAF--IRDYGYGVASLYNDSYD 310
+P G ++ L + ++ VGAP +GP I + K I A+ I D+ +G +
Sbjct: 236 IPTFGRSFTLAS-SKTDVGAPVSGPGIPGRFTKE-KGILAYYEICDFLHGATTHRFRDQQ 293
Query: 311 VNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
V + + G W+ +D E++ K + K + L G + L DD
Sbjct: 294 VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 151/283 (53%), Gaps = 17/283 (6%)
Query: 82 NTVKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGV 138
NT+K +NP + TLLS+ G G FS++ +++ +R++FI+S R +GF GLDL+ +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 139 LPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLL-VMKSHHLPAIDSVTYPIDSMLRN 197
P + + +L L E +AE EA+ +G QLLL S AID Y I + R+
Sbjct: 120 YPGRR-DKRHLTTLVKEMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDR-GYDIAQISRH 176
Query: 198 LDWVHVRAYDYYLPSRDNFTGAHSALY-----SSSSWFNTNDSIREWLKTGFPANKLVLG 252
LD++ + YD++ R G HS L+ +SS + N + ++ L+ G PANKLV+G
Sbjct: 177 LDFISLLTYDFHGAWRQT-VGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAPANKLVMG 235
Query: 253 LPYHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAF--IRDYGYGVASLYNDSYD 310
+P G ++ L + ++ VGAP +GP + + K I A+ I D+ +G +
Sbjct: 236 IPTFGRSFTLAS-SKTDVGAPVSGPGVPGRFTKE-KGILAYYEICDFLHGATTHRFRDQQ 293
Query: 311 VNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
V + + G W+ +D E++ K + K + L G + L DD
Sbjct: 294 VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 165/323 (51%), Gaps = 25/323 (7%)
Query: 45 INSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRG---GT 101
I+ L TH+ +FA ++++ + + + NT+K +NP++ TLLS+ G G
Sbjct: 25 IDPFLCTHVIYSFANISNNEIDTW--EWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNFGP 82
Query: 102 AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVT 161
FS + +++ +R++FI+S R +GF GLDL+ + P + + +L L E +AE
Sbjct: 83 QRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRHLTTLVKEMKAEFI 141
Query: 162 SEARNSGNSQLLL-VMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAH 220
EA+ +G QLLL S AID Y I + R+LD++ + YD++ R G H
Sbjct: 142 REAQ-AGTEQLLLSAAVSAGKIAIDR-GYDIAQISRHLDFISLLTYDFHGAWRQT-VGHH 198
Query: 221 SALY-----SSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGAPAA 275
S L+ +SS + N + ++ L+ G PANKLV+G+P G ++ L + ++ VGAP +
Sbjct: 199 SPLFRGQEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGKSFTLAS-SKTDVGAPVS 257
Query: 276 GPAI-----TMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWINFDGAEAIT 330
GP I G + Y I F++ G + V + + G W+ +D E++
Sbjct: 258 GPGIPGQFTKEKGILAYYEICDFLQ----GATTHRFRDQQVPYATKGNQWVAYDDQESVK 313
Query: 331 AKVSFAKEKGLLGYNAFQLSNDD 353
K + K + L G + L DD
Sbjct: 314 NKARYLKNRQLAGAMVWALDLDD 336
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 152/329 (46%), Gaps = 28/329 (8%)
Query: 45 INSGLFTHLTCAFAYLNSSTFTL--YINSTYEKSFSSFTNTVKRKNPSVVTLLSIRG--- 99
IN L THL AFA + ++ T + + T ++F N +K KN + TLL+I G
Sbjct: 25 INPCLCTHLIYAFAGMQNNEITTIEWNDVTLYQAF----NGLKNKNSQLKTLLAIGGWNF 80
Query: 100 GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLP----SKSTNMTNLGILFDE 155
GTA F++MV+ NR++FI S I+ R Y F GLD P S + +L E
Sbjct: 81 GTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQE 140
Query: 156 WRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDN 215
R EA+ +L++ + Y I + + LD++HV YD + S +
Sbjct: 141 MREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHG-SWEG 199
Query: 216 FTGAHSALYS------SSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENA 269
+TG +S LY S+++ N + + W G PA KL++G P +G+ + L NP+
Sbjct: 200 YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTG 259
Query: 270 VGAP-----AAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWINFD 324
+GAP AGP G Y I F+++ G ++ +V + G W+ +D
Sbjct: 260 IGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNVWVGYD 316
Query: 325 GAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
++ K + K G + + DD
Sbjct: 317 NVKSFDIKAQWLKHNKFGGAMVWAIDLDD 345
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 168/320 (52%), Gaps = 19/320 (5%)
Query: 45 INSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRG---GT 101
I+ L TH+ +FA ++++ + + + NT+K +NP++ TLLS+ G G+
Sbjct: 25 IDPFLCTHVIYSFANISNNEIDTW--EWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNYGS 82
Query: 102 AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVT 161
FS + +++ +R++FI+S R +GF GLDL+ + P + +L L E +AE
Sbjct: 83 QRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWPGWR-DKRHLTTLVKEMKAEFV 141
Query: 162 SEARNSGNSQLLL-VMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAH 220
EA+ +G QLLL + AID Y I + R+LD++ + YD++ R G H
Sbjct: 142 REAQ-AGTEQLLLSAAVTAGKIAIDR-GYDIAQISRHLDFISLLTYDFHGAWRQT-VGHH 198
Query: 221 SALY-----SSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGAPAA 275
S L+ +SS + N + ++ L+ G PANKLV+G+P G ++ L + ++ VGAP +
Sbjct: 199 SPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLAS-SKTDVGAPIS 257
Query: 276 GPAITMDGSMGYKSIKAF--IRDYGYGVASLYNDSYDVNFFSSGKNWINFDGAEAITAKV 333
GP I + +K I A+ I D+ +G + V + + G W+ +D E++ K
Sbjct: 258 GPGIPGRFTK-WKGILAYYEICDFLHGATTHRFRDQQVPYATKGNQWVAYDDQESVKNKA 316
Query: 334 SFAKEKGLLGYNAFQLSNDD 353
+ K + L G + L DD
Sbjct: 317 RYLKNRQLAGAMVWALDLDD 336
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 152/329 (46%), Gaps = 28/329 (8%)
Query: 45 INSGLFTHLTCAFAYLNSSTFTL--YINSTYEKSFSSFTNTVKRKNPSVVTLLSIRG--- 99
IN L THL AFA + ++ T + + T ++F N +K KN + TLL+I G
Sbjct: 29 INPCLCTHLIYAFAGMQNNEITTIEWNDVTLYQAF----NGLKNKNSQLKTLLAIGGWNF 84
Query: 100 GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLP----SKSTNMTNLGILFDE 155
GTA F++MV+ NR++FI S I+ R Y F GLD P S + +L E
Sbjct: 85 GTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQE 144
Query: 156 WRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDN 215
R EA+ +L++ + Y I + + LD++HV YD + S +
Sbjct: 145 MREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLH-GSWEG 203
Query: 216 FTGAHSALYS------SSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENA 269
+TG +S LY S+++ N + + W G PA KL++G P +G+ + L NP+
Sbjct: 204 YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTG 263
Query: 270 VGAP-----AAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWINFD 324
+GAP AGP G Y I F+++ G ++ +V + G W+ +D
Sbjct: 264 IGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNVWVGYD 320
Query: 325 GAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
++ K + K G + + DD
Sbjct: 321 NIKSFDIKAQWLKHNKFGGAMVWAIDLDD 349
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 144/285 (50%), Gaps = 21/285 (7%)
Query: 82 NTVKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGV 138
NT+K +NP + TLLS+ G G FS + +++ +R++FI+S R +GF GLDL+ +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 139 LPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNL 198
P + + +L L E +AE EA+ LL S AID Y I + R+L
Sbjct: 120 YPGRR-DKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDR-GYDIAQISRHL 177
Query: 199 DWVHVRAYDYYLPSRDNFTGAHSALY-----SSSSWFNTNDSIREWLKTGFPANKLVLGL 253
D++ + YD++ R G HS L+ +SS + N + ++ L+ G PANKLV+G+
Sbjct: 178 DFISLLTYDFHGAWRQT-VGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGI 236
Query: 254 PYHGYAWQLVNPNENAVGAPAAGPAI-----TMDGSMGYKSIKAFIRDYGYGVASLYNDS 308
P G ++ L + ++ VGAP +GP I G + Y I F+ +G +
Sbjct: 237 PTFGRSFTLAS-SKTDVGAPISGPGIPGRFTKEKGILAYYEICDFL----HGATTHRFRD 291
Query: 309 YDVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
V + + G W+ +D E++ K + K + L G + L DD
Sbjct: 292 QQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 167/326 (51%), Gaps = 31/326 (9%)
Query: 45 INSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRG---GT 101
I+ L TH+ +FA ++++ + + + NT+K +NP++ TLLS+ G G+
Sbjct: 25 IDPFLCTHVIYSFANISNNEIDTW--EWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNFGS 82
Query: 102 AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVT 161
FS + +++ +R++FI+S R +GF GLDL+ + P + +L L E +AE
Sbjct: 83 ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGWR-DKRHLTTLVKEMKAEFV 141
Query: 162 SEARNSGNSQLLLVMKSHHLP----AIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFT 217
EA+ +G QLLL S +P AID Y I + R+LD++ + YD++ R
Sbjct: 142 REAQ-AGTEQLLL---SAAVPAGKIAIDR-GYDIAQISRHLDFISLLTYDFHGGWRGT-V 195
Query: 218 GAHSALY-----SSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGA 272
G HS L+ SS + N + ++ L+ G PANKLV+G+P G ++ L + ++ VGA
Sbjct: 196 GHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLAS-SKTDVGA 254
Query: 273 PAAGPAI-----TMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWINFDGAE 327
P +GP I G++ Y I F+ +G + V + + G W+ +D E
Sbjct: 255 PISGPGIPGQFTKEKGTLAYYEICDFL----HGATTHRFRDQQVPYATKGNQWVAYDDQE 310
Query: 328 AITAKVSFAKEKGLLGYNAFQLSNDD 353
++ K + K + L G + L DD
Sbjct: 311 SVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 142/285 (49%), Gaps = 21/285 (7%)
Query: 82 NTVKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGV 138
NT+K +NP + TLLS+ G G FS + +++ +R++FI+S R +GF GLDL+ +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 139 LPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNL 198
P + + +L L E +AE EA+ LL S AID Y I + R+L
Sbjct: 120 YPGRR-DKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDR-GYDIAQISRHL 177
Query: 199 DWVHVRAYDYYLPSRDNFTGAHSALY-----SSSSWFNTNDSIREWLKTGFPANKLVLGL 253
D++ + YD++ R G HS L+ +SS + N + ++ L+ G PANKLV+G+
Sbjct: 178 DFISLLTYDFHGAWRQT-VGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGI 236
Query: 254 PYHGYAWQLVNPNENAVGAPAAGPAI-----TMDGSMGYKSIKAFIRDYGYGVASLYNDS 308
P G ++ L + + GAP +GP I G + Y I F+ +G +
Sbjct: 237 PTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFL----HGATTHRFRD 291
Query: 309 YDVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
V + + G W+ +D E++ K + K + L G + L DD
Sbjct: 292 QQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 15/282 (5%)
Query: 82 NTVKRKNPSVVTLLSIRG---GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGV 138
NT+K +NP + TLLS+ G G FS++ +++ +R++FI+S R +GF GLDL+ +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 139 LPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNL 198
P + + +L L E +AE EA+ LL S AID Y I + R+L
Sbjct: 120 YPGRR-DKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDR-GYDIAQISRHL 177
Query: 199 DWVHVRAYDYYLPSRDNFTGAHSALY-----SSSSWFNTNDSIREWLKTGFPANKLVLGL 253
D++ + YD++ R G HS L+ SS + N + ++ L+ G PANKLV+G+
Sbjct: 178 DFISLLTYDFHGAWRQT-VGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGI 236
Query: 254 PYHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAF--IRDYGYGVASLYNDSYDV 311
P G ++ L + + GAP +GP I + K I A+ I D+ +G + V
Sbjct: 237 PTFGRSFTLASSKTDG-GAPISGPGIPGRFTK-EKGILAYYEICDFLHGATTHRFRDQQV 294
Query: 312 NFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353
+ + G W+ +D E++ K + K + L G + L DD
Sbjct: 295 PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 165/320 (51%), Gaps = 19/320 (5%)
Query: 45 INSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRG---GT 101
I+ L TH+ +FA ++++ + + + NT+K +NP++ TLLS+ G G+
Sbjct: 25 IDPFLCTHVIYSFANISNNEIDTW--EWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNFGS 82
Query: 102 AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVT 161
FS + +++ +R++FI+S R +GF GLDL+ + P + +L L E +AE
Sbjct: 83 ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGWR-DKRHLTTLVKEMKAEFV 141
Query: 162 SEARNSGNSQLLL-VMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAH 220
EA+ +G QLLL + AID Y I + R+LD++ + YD++ R G H
Sbjct: 142 REAQ-AGTEQLLLSAAVTAGKIAIDR-GYDIAQISRHLDFISLLTYDFHGGWRGT-VGHH 198
Query: 221 SALY-----SSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGAPAA 275
S L+ SS + N + ++ L+ G PANKLV+G+P G ++ L + + VGAP +
Sbjct: 199 SPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLAS-SSTRVGAPIS 257
Query: 276 GPAITMDGSMGYKSIKAF--IRDYGYGVASLYNDSYDVNFFSSGKNWINFDGAEAITAKV 333
GP I + K I A+ I D+ +G + V + + G W+ +D E++ K
Sbjct: 258 GPGIPGQFTK-EKGILAYYEICDFLHGATTHRFRDQQVPYATKGNQWVAYDDQESVKNKA 316
Query: 334 SFAKEKGLLGYNAFQLSNDD 353
+ K + L G + L DD
Sbjct: 317 RYLKNRQLAGAMVWALDLDD 336
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 156/324 (48%), Gaps = 23/324 (7%)
Query: 45 INSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRG---GT 101
I+ L +HL +FA + ++ + I E N++K KNP + LLSI G G+
Sbjct: 26 IDPFLCSHLIYSFASIENNK--VIIKDKSEVMLYQTINSLKTKNPKLKILLSIGGYLFGS 83
Query: 102 AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVT 161
F MV+ S++R FI S I R + F GLD+S + P + N T+ +L E
Sbjct: 84 KGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQKEN-THFTVLIHELAEAFQ 142
Query: 162 SEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLP-SRDNFTGAH 220
+ S +LLL + +Y ++ + ++LD++++ ++D++ + TG +
Sbjct: 143 KDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHN 202
Query: 221 SAL------YSSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGAP- 273
S L SS++N ++ W+ G P+ K+V+G+P +G+++ L + E VGAP
Sbjct: 203 SPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASA-ETTVGAPA 261
Query: 274 ----AAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWINFDGAEAI 329
AAGP G + Y I F++ G + L + V + G W+ +D +++
Sbjct: 262 SGPGAAGPITESSGFLAYYEICQFLK--GAKITRLQDQQ--VPYAVKGNQWVGYDDVKSM 317
Query: 330 TAKVSFAKEKGLLGYNAFQLSNDD 353
KV F K L G + + DD
Sbjct: 318 ETKVQFLKNLNLGGAMIWSIDMDD 341
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 143/295 (48%), Gaps = 28/295 (9%)
Query: 84 VKRKNPSVVTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPS 141
+K+ N S+ +LSI G T F + + + R +F ++++E + +GF G+D+ P+
Sbjct: 98 LKKANRSLKIMLSIGGWTWSTNFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYPA 157
Query: 142 KSTNMTNLGILFDEWRAEVTSEARNSGNS-QLLLVMKSHHLPAIDSVTYPIDSMLRNLDW 200
T+ N+ +L R E+ S + N L + + P+ +V + + LD
Sbjct: 158 SETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYNV-LKLAQLGSVLDN 216
Query: 201 VHVRAYDYYLPSRDNFTGAHSALY-----SSSSWFNTNDSIREWLKTGFPANKLVLGLPY 255
+++ AYD Y S D+ +G + LY SS+ F+T ++ ++ G PA+K++LG+P
Sbjct: 217 INLMAYD-YAGSWDSVSGHQTNLYPSTSNPSSTPFSTKAAVDAYIAAGVPASKIILGMPI 275
Query: 256 HGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGY---GVASLYNDS---Y 309
+G A+ VG G + ++G S ++ I DY A++ DS
Sbjct: 276 YGRAF---------VGTDGPGKPYS---TIGEGSWESGIWDYKVLPKAGATVITDSAAGA 323
Query: 310 DVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQL 364
++ SS + I++D + + KVS+AK GL G ++ S D SL G L
Sbjct: 324 TYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASADKTGSDSLIGTAL 378
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 137/309 (44%), Gaps = 54/309 (17%)
Query: 82 NTVKRKNPSVVTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVL 139
N +K+ NP++ T++S+ G T FS + ++ R+ F S+++ R Y F G+DL
Sbjct: 114 NKLKQTNPNLKTIISVGGWTWSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEY 173
Query: 140 P---------SKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYP 190
P + + N +L + R ++ + G LL + S TY
Sbjct: 174 PVSGGLDGNSKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGA------SATYA 227
Query: 191 IDSMLRNL----DWVHVRAYDY---------------YLPSRDNFTGAHSALYSSSSWFN 231
++ L + DW+++ YD+ Y P+ A +A ++ FN
Sbjct: 228 ANTELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPA------ASAAGVPDANTFN 281
Query: 232 TNDSIREWLKTGFPANKLVLGLPYHGYAW----QLVNPN-ENAVGAPAAGPAITMDGSMG 286
+ L G PA KLVLG+P++G W Q N + G + G GS
Sbjct: 282 VAAGAQGHLDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFD 339
Query: 287 YKSIKA-FIRDYGYGVASLYNDSYDVNFF--SSGKNWINFDGAEAITAKVSFAKEKGLLG 343
+ ++A +I GY +ND+ V + +S K +I++D AE++ K ++ K KGL G
Sbjct: 340 FYDLEANYINKNGY--TRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGG 397
Query: 344 YNAFQLSND 352
++LS D
Sbjct: 398 AMFWELSGD 406
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 43/333 (12%)
Query: 39 ELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTY---EKSF--SSFTNT---------- 83
+LPV ++ TH+ AFA + T +Y+ ++ EK + S+++T
Sbjct: 63 DLPVERL-----THVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQ 117
Query: 84 ---VKRKNPSVVTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGV 138
+K++N ++ LLSI G T F+ + + RK+F +++++ + GF GLD+
Sbjct: 118 LYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWE 177
Query: 139 LPSKSTNMTNLGILFDEWRAEVTS-EARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRN 197
P + +L E R + S A N+G LL + S P V + + M +
Sbjct: 178 YPENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLH-LKDMDQQ 236
Query: 198 LDWVHVRAYDYYLPSRDNFTGAHSALYSSSS-----WFNTNDSIREWLKTGFPANKLVLG 252
LD+ ++ AYDY S + +G + +Y+ +S FNT ++ + G PANK+VLG
Sbjct: 237 LDFWNLMAYDY-AGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLG 295
Query: 253 LPYHGYAWQLVNPNENAVGAP--AAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYD 310
+P +G ++ N + G P G +G YK++ + + SYD
Sbjct: 296 MPLYGRSFA----NTDGPGKPYNGVGQGSWENGVWDYKALPQAGATEHVLPDIMASYSYD 351
Query: 311 VNFFSSGKNWINFDGAEAITAKVSFAKEKGLLG 343
++ K I++D + K + K GL G
Sbjct: 352 ----ATNKFLISYDNPQVANLKSGYIKSLGLGG 380
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 127/264 (48%), Gaps = 37/264 (14%)
Query: 39 ELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTY---EKSF--SSFTNT---------- 83
+LPV ++ TH+ AFA + T +Y+ ++ EK + S+++T
Sbjct: 25 DLPVERL-----THVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQ 79
Query: 84 ---VKRKNPSVVTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGV 138
+K++N ++ LLSI G T F+ + + RK+F +++++ + GF GLD+
Sbjct: 80 LYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWE 139
Query: 139 LPSKSTNMTNLGILFDEWRAEVTS-EARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRN 197
P + +L E R + S A N+G LL + S P V + + M +
Sbjct: 140 YPENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLH-LKDMDQQ 198
Query: 198 LDWVHVRAYDYYLPSRDNFTGAHSALYSSSS-----WFNTNDSIREWLKTGFPANKLVLG 252
LD+ ++ AYDY S + +G + +Y+ +S FNT ++ + G PANK+VLG
Sbjct: 199 LDFWNLMAYDY-AGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLG 257
Query: 253 LPYHGYAWQLVNPNENAVGAPAAG 276
+P +G ++ N + G P G
Sbjct: 258 MPLYGRSFA----NTDGPGKPYNG 277
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 91/384 (23%), Positives = 150/384 (39%), Gaps = 78/384 (20%)
Query: 41 PVSQINSGLFTHLTCAFAYLNSSTFTLY-INST---YEKSFSSFTNTVKRKNPSVVTLLS 96
P +I +HL +A L Y +N Y+ FS T ++KRK P + LLS
Sbjct: 24 PDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVT-SLKRKYPHLKVLLS 82
Query: 97 IRGGTAIFSSMVN--------QSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMT- 147
+ G I N + + FI S+ E + YGF GLDL+ P
Sbjct: 83 VGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVH 142
Query: 148 -NLGI--------------------LFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDS 186
+LG+ L E + + ++S + L+ + LP ++S
Sbjct: 143 GDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTV-LPNVNS 201
Query: 187 VTY-PIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSA-LYSSS------SWFNTNDSIRE 238
Y I ++ +D+V++ +D+ P+R+ +SA +Y + N + +
Sbjct: 202 TWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEY 261
Query: 239 WLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYG 298
WL GFP+NK+ LG+ +G AW+L + G P P + G++S K + Y
Sbjct: 262 WLSQGFPSNKINLGVATYGNAWKLTK-DSGLEGVPVV-PETSGPAPEGFQSQKPGLLSYA 319
Query: 299 YGVASLYNDSYDVNFFSSGKN-----------------------------WINFDGAEAI 329
L N N F G W+++D ++
Sbjct: 320 EICGKLSNPQ---NQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSA 376
Query: 330 TAKVSFAKEKGLLGYNAFQLSNDD 353
+ K ++A+ K L G F LS DD
Sbjct: 377 SNKAAYARVKNLGGVALFDLSYDD 400
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 29/236 (12%)
Query: 50 FTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNT------------------VKRKNPSV 91
FTH+ AFA + S +Y++ T+ + + +K+ N ++
Sbjct: 29 FTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNL 87
Query: 92 VTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNL 149
TLLSI G T F + + RK F ++S++ + GF G+D++ P +
Sbjct: 88 KTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDINWEYPEDEKQANDF 147
Query: 150 GILFDEWRAEVTS-EARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDY 208
+L R + + A++ + LL + S P + + M + LD+ ++ AYD+
Sbjct: 148 VLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQ-NYNKLKLAEMDKYLDFWNLMAYDF 206
Query: 209 YLPSRDNFTGAHSALYSS-----SSWFNTNDSIREWLKTGFPANKLVLGLPYHGYA 259
S D +G S ++ S S+ F+++ ++++++K G PANK+VLG+P +G A
Sbjct: 207 S-GSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRA 261
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 29/236 (12%)
Query: 50 FTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNT------------------VKRKNPSV 91
FTH+ AFA + S +Y++ T+ + + +K+ N ++
Sbjct: 29 FTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNL 87
Query: 92 VTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNL 149
TLLSI G T F + + RK F ++S++ + GF G+D+ P +
Sbjct: 88 KTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQYPEDEKQANDF 147
Query: 150 GILFDEWRAEVTS-EARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDY 208
+L R + + A++ + LL + S P + + M + LD+ ++ AYD+
Sbjct: 148 VLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQ-NYNKLKLAEMDKYLDFWNLMAYDF 206
Query: 209 YLPSRDNFTGAHSALYSS-----SSWFNTNDSIREWLKTGFPANKLVLGLPYHGYA 259
S D +G S ++ S S+ F+++ ++++++K G PANK+VLG+P +G A
Sbjct: 207 S-GSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRA 261
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 29/236 (12%)
Query: 50 FTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNT------------------VKRKNPSV 91
FTH+ AFA + S +Y++ T+ + + +K+ N ++
Sbjct: 29 FTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNL 87
Query: 92 VTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNL 149
TLLSI G T F + + RK F ++S++ + GF G+D+ P +
Sbjct: 88 KTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWEYPEDEKQANDF 147
Query: 150 GILFDEWRAEVTS-EARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDY 208
+L R + + A++ + LL + S P + + M + LD+ ++ AYD+
Sbjct: 148 VLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQ-NYNKLKLAEMDKYLDFWNLMAYDF 206
Query: 209 YLPSRDNFTGAHSALYSS-----SSWFNTNDSIREWLKTGFPANKLVLGLPYHGYA 259
S D +G S ++ S S+ F+++ ++++++K G PANK+VLG+P +G A
Sbjct: 207 S-GSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRA 261
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 127/324 (39%), Gaps = 60/324 (18%)
Query: 84 VKRKNPSVVTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIETARLYGF-QGLDLSGVLP 140
+K++NP + + SI GGT F V++ NR +F+ S + + + F G+D+ P
Sbjct: 238 LKQRNPDLKIIPSIGGGTLSDPFYDFVDKK-NRDTFVASVKKFLKTWKFYDGVDIDWEFP 296
Query: 141 SKSTNMTNLG----------ILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYP 190
+ G L E R + +G + L I+ V Y
Sbjct: 297 GGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDYA 356
Query: 191 IDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSS---------------------SW 229
++ +D++ YD+Y +N G +ALY S
Sbjct: 357 --DAVQYMDYIFAMTYDFY-GGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPA 413
Query: 230 FNTNDSIREWLKTGFPANKLVLGLPYHGYAWQ------LVNPNENAVGAPAA------GP 277
+ ++ I+ L G PANKLVLG +G W+ L +PN+ G
Sbjct: 414 YTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQ 473
Query: 278 AITMDGSMGYKSIKAF--------IRDYGYGVASLYNDSYDVNFFSSGKNWINFDGAEAI 329
+ DG + YK IK+F I + YG + + N S I FD ++
Sbjct: 474 GVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWN--RSTGELITFDDHRSV 531
Query: 330 TAKVSFAKEKGLLGYNAFQLSNDD 353
AK ++AK GL G ++++ D+
Sbjct: 532 LAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 128/324 (39%), Gaps = 60/324 (18%)
Query: 84 VKRKNPSVVTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIETARLYGF-QGLDLSGVLP 140
+K++NP + + SI G T F V++ NR +F+ S + + + F G+D+ + P
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDKK-NRDTFVASVKKFLKTWKFYDGVDIDWMFP 296
Query: 141 SKSTNMTNLG----------ILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYP 190
+ G L E R + +G + L I+ V Y
Sbjct: 297 GGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDYA 356
Query: 191 IDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSS---------------------SW 229
++ +D++ YD+Y +N G +ALY S
Sbjct: 357 --DAVQYMDYIFAMTYDFY-GGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPA 413
Query: 230 FNTNDSIREWLKTGFPANKLVLGLPYHGYAWQ------LVNPNENAVGAP------AAGP 277
+ ++ I+ L G PANKLVLG +G W+ L +PN+ G +
Sbjct: 414 YTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQ 473
Query: 278 AITMDGSMGYKSIKAF--------IRDYGYGVASLYNDSYDVNFFSSGKNWINFDGAEAI 329
+ DG + YK IK+F I + YG + + N S I FD ++
Sbjct: 474 GVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWN--RSTGELITFDDHRSV 531
Query: 330 TAKVSFAKEKGLLGYNAFQLSNDD 353
AK ++AK GL G ++++ D+
Sbjct: 532 LAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 127/324 (39%), Gaps = 60/324 (18%)
Query: 84 VKRKNPSVVTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIETARLYGF-QGLDLSGVLP 140
+K++NP + + SI G T F V++ NR +F+ S + + + F G+D+ P
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDKK-NRDTFVASVKKFLKTWKFYDGVDIDWEFP 296
Query: 141 SKSTNMTNLG----------ILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYP 190
+ G L E R + +G + L I+ V Y
Sbjct: 297 GGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDYA 356
Query: 191 IDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSS---------------------SW 229
++ +D++ YD+Y +N G +ALY S
Sbjct: 357 --DAVQYMDYIFAMTYDFY-GGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPA 413
Query: 230 FNTNDSIREWLKTGFPANKLVLGLPYHGYAWQ------LVNPNENAVGAP------AAGP 277
+ ++ I+ L G PANKLVLG +G W+ L +PN+ G +
Sbjct: 414 YTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQ 473
Query: 278 AITMDGSMGYKSIKAF--------IRDYGYGVASLYNDSYDVNFFSSGKNWINFDGAEAI 329
+ DG + YK IK+F I + YG + + N S I FD ++
Sbjct: 474 GVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWN--RSTGELITFDDHRSV 531
Query: 330 TAKVSFAKEKGLLGYNAFQLSNDD 353
AK ++AK GL G ++++ D+
Sbjct: 532 LAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/408 (19%), Positives = 155/408 (37%), Gaps = 71/408 (17%)
Query: 35 TSRSELPVSQI---NSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTN---TVKRKN 88
TS PVS I + TH+ +F +NS+ + +T + N +K N
Sbjct: 26 TSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHN 85
Query: 89 PSVVTLLSIRG---------GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVL 139
PS+ + SI G A + + V ++R F +S + + YGF G+D++
Sbjct: 86 PSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEY 145
Query: 140 PSKSTNMTNLGILFDEWRAEVTSEARNSGNSQL---LLVMKSHHLPAIDSVTYPIDSMLR 196
P ++ + E R + + G L L + + + + ++
Sbjct: 146 P-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVA 204
Query: 197 NLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIRE----W------------- 239
LD++++ YD P + T +AL+ ++ +++RE W
Sbjct: 205 PLDYINLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPF 263
Query: 240 ------------LKTGFPANKLVLGLPYHGYAWQLVNPNENAV----GAPAAGPAITMDG 283
+ G P+ K+V+G+P++G A++ V+ P P + D
Sbjct: 264 SLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDY 323
Query: 284 SM---------------GYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKN--WINFDGA 326
+ Y+ ++ ++ YG L+ND + +N ++ +D A
Sbjct: 324 WLVGCEECVRDKDPRIASYRQLEQMLQG-NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDA 382
Query: 327 EAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQLLITYNSYDQS 374
E+ K + K++ L G + L D++ LA + YD S
Sbjct: 383 ESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDS 430
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/408 (19%), Positives = 154/408 (37%), Gaps = 71/408 (17%)
Query: 35 TSRSELPVSQI---NSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTN---TVKRKN 88
TS PVS I + TH+ +F +NS+ + +T + N +K N
Sbjct: 26 TSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHN 85
Query: 89 PSVVTLLSIRG---------GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVL 139
PS+ + SI G A + + V ++R F +S + + YGF G+D+
Sbjct: 86 PSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQY 145
Query: 140 PSKSTNMTNLGILFDEWRAEVTSEARNSGNSQL---LLVMKSHHLPAIDSVTYPIDSMLR 196
P ++ + E R + + G L L + + + + ++
Sbjct: 146 P-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVA 204
Query: 197 NLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIRE----W------------- 239
LD++++ YD P + T +AL+ ++ +++RE W
Sbjct: 205 PLDYINLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPF 263
Query: 240 ------------LKTGFPANKLVLGLPYHGYAWQLVNPNENAV----GAPAAGPAITMDG 283
+ G P+ K+V+G+P++G A++ V+ P P + D
Sbjct: 264 SLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDY 323
Query: 284 SM---------------GYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKN--WINFDGA 326
+ Y+ ++ ++ YG L+ND + +N ++ +D A
Sbjct: 324 WLVGCEECVRDKDPRIASYRQLEQMLQG-NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDA 382
Query: 327 EAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQLLITYNSYDQS 374
E+ K + K++ L G + L D++ LA + YD S
Sbjct: 383 ESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDS 430
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/408 (19%), Positives = 155/408 (37%), Gaps = 71/408 (17%)
Query: 35 TSRSELPVSQI---NSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTN---TVKRKN 88
TS PVS I + TH+ +F +NS+ + +T + N +K N
Sbjct: 26 TSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHN 85
Query: 89 PSVVTLLSIRG---------GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVL 139
PS+ + SI G A + + V ++R F +S + + YGF G+D++
Sbjct: 86 PSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEY 145
Query: 140 PSKSTNMTNLGILFDEWRAEVTSEARNSGNSQL---LLVMKSHHLPAIDSVTYPIDSMLR 196
P ++ + E R + + G L L + + + + ++
Sbjct: 146 P-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVA 204
Query: 197 NLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIRE----W------------- 239
LD++++ YD P + T +AL+ ++ +++RE W
Sbjct: 205 PLDYINLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPF 263
Query: 240 ------------LKTGFPANKLVLGLPYHGYAWQLVNPNENAV----GAPAAGPAITMDG 283
+ G P+ K+V+G+P++G A++ V+ P P + D
Sbjct: 264 SLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDY 323
Query: 284 SM---------------GYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKN--WINFDGA 326
+ Y+ ++ ++ YG L+ND + +N ++ +D A
Sbjct: 324 WLVGCEECVRDKDPRIASYRQLEQMLQG-NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDA 382
Query: 327 EAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQLLITYNSYDQS 374
E+ K + K++ L G + L D++ LA + YD S
Sbjct: 383 ESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDS 430
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/408 (19%), Positives = 154/408 (37%), Gaps = 71/408 (17%)
Query: 35 TSRSELPVSQI---NSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTN---TVKRKN 88
TS PVS I + TH+ +F +NS+ + +T + N +K N
Sbjct: 26 TSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHN 85
Query: 89 PSVVTLLSIRG---------GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVL 139
PS+ + SI G A + + V ++R F +S + + YGF G+D+
Sbjct: 86 PSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEY 145
Query: 140 PSKSTNMTNLGILFDEWRAEVTSEARNSGNSQL---LLVMKSHHLPAIDSVTYPIDSMLR 196
P ++ + E R + + G L L + + + + ++
Sbjct: 146 P-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVA 204
Query: 197 NLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIRE----W------------- 239
LD++++ YD P + T +AL+ ++ +++RE W
Sbjct: 205 PLDYINLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPF 263
Query: 240 ------------LKTGFPANKLVLGLPYHGYAWQLVNPNENAV----GAPAAGPAITMDG 283
+ G P+ K+V+G+P++G A++ V+ P P + D
Sbjct: 264 SLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDY 323
Query: 284 SM---------------GYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKN--WINFDGA 326
+ Y+ ++ ++ YG L+ND + +N ++ +D A
Sbjct: 324 WLVGCEECVRDKDPRIASYRQLEQMLQG-NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDA 382
Query: 327 EAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQLLITYNSYDQS 374
E+ K + K++ L G + L D++ LA + YD S
Sbjct: 383 ESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDS 430
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/408 (19%), Positives = 154/408 (37%), Gaps = 71/408 (17%)
Query: 35 TSRSELPVSQI---NSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTN---TVKRKN 88
TS PVS I + TH+ +F +NS+ + +T + N +K N
Sbjct: 26 TSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHN 85
Query: 89 PSVVTLLSIRG---------GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVL 139
PS+ + SI G A + + V ++R F +S + + YGF G+D+
Sbjct: 86 PSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEY 145
Query: 140 PSKSTNMTNLGILFDEWRAEVTSEARNSGNSQL---LLVMKSHHLPAIDSVTYPIDSMLR 196
P ++ + E R + + G L L + + + + ++
Sbjct: 146 P-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVA 204
Query: 197 NLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIRE----W------------- 239
LD++++ YD P + T +AL+ ++ +++RE W
Sbjct: 205 PLDYINLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPF 263
Query: 240 ------------LKTGFPANKLVLGLPYHGYAWQLVNPNENAV----GAPAAGPAITMDG 283
+ G P+ K+V+G+P++G A++ V+ P P + D
Sbjct: 264 SLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDY 323
Query: 284 SM---------------GYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKN--WINFDGA 326
+ Y+ ++ ++ YG L+ND + +N ++ +D A
Sbjct: 324 WLVGCEECVRDKDPRIASYRQLEQMLQG-NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDA 382
Query: 327 EAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQLLITYNSYDQS 374
E+ K + K++ L G + L D++ LA + YD S
Sbjct: 383 ESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDS 430
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/408 (19%), Positives = 154/408 (37%), Gaps = 71/408 (17%)
Query: 35 TSRSELPVSQI---NSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTN---TVKRKN 88
TS PVS I + TH+ +F +NS+ + +T + N +K N
Sbjct: 25 TSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHN 84
Query: 89 PSVVTLLSIRG---------GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVL 139
PS+ + SI G A + + V ++R F +S + + YGF G+D+
Sbjct: 85 PSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEY 144
Query: 140 PSKSTNMTNLGILFDEWRAEVTSEARNSGNSQL---LLVMKSHHLPAIDSVTYPIDSMLR 196
P ++ + E R + + G L L + + + + ++
Sbjct: 145 P-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVA 203
Query: 197 NLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIRE----W------------- 239
LD++++ YD P + T +AL+ ++ +++RE W
Sbjct: 204 PLDYINLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPF 262
Query: 240 ------------LKTGFPANKLVLGLPYHGYAWQLVNPNENAV----GAPAAGPAITMDG 283
+ G P+ K+V+G+P++G A++ V+ P P + D
Sbjct: 263 SLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDY 322
Query: 284 SM---------------GYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKN--WINFDGA 326
+ Y+ ++ ++ YG L+ND + +N ++ +D A
Sbjct: 323 WLVGCEECVRDKDPRIASYRQLEQMLQG-NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDA 381
Query: 327 EAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQLLITYNSYDQS 374
E+ K + K++ L G + L D++ LA + YD S
Sbjct: 382 ESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDS 429
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/408 (19%), Positives = 154/408 (37%), Gaps = 71/408 (17%)
Query: 35 TSRSELPVSQI---NSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTN---TVKRKN 88
TS PVS I + TH+ +F +NS+ + +T + N +K N
Sbjct: 26 TSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHN 85
Query: 89 PSVVTLLSIRG---------GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVL 139
PS+ + SI G A + + V ++R F +S + + YGF G+++
Sbjct: 86 PSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEY 145
Query: 140 PSKSTNMTNLGILFDEWRAEVTSEARNSGNSQL---LLVMKSHHLPAIDSVTYPIDSMLR 196
P ++ + E R + + G L L + + + + ++
Sbjct: 146 P-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVA 204
Query: 197 NLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIRE------W----------- 239
LD++++ YD P + T +AL+ ++ +++RE W
Sbjct: 205 PLDYINLMTYDLAGP-WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPF 263
Query: 240 ------------LKTGFPANKLVLGLPYHGYAWQLVNPNENAV----GAPAAGPAITMDG 283
+ G P+ K+V+G+P++G A++ V+ P P + D
Sbjct: 264 SLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDY 323
Query: 284 SM---------------GYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKN--WINFDGA 326
+ Y+ ++ ++ YG L+ND + +N ++ +D A
Sbjct: 324 WLVGCEECVRDKDPRIASYRQLEQMLQG-NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDA 382
Query: 327 EAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQLLITYNSYDQS 374
E+ K + K++ L G + L D++ LA + YD S
Sbjct: 383 ESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDS 430
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 138/333 (41%), Gaps = 62/333 (18%)
Query: 72 TYEKSFSSFTNTVKR---KNPSVVTLLSIRGGT--AIFSSMVNQSSNRKSFIESSIE--- 123
T+++ + N +K+ KNP + ++S+ G T FS ++R+ + S I+
Sbjct: 96 TWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYI 155
Query: 124 TARLYGFQG-------------LDLSGVLPSKSTNMTNLGI-----------LFDEWRAE 159
L F+G +D+ P ++ + G+ L E+R +
Sbjct: 156 KGNLPNFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQ 215
Query: 160 VTSEARNSGNSQLLLVMKSHHLPA----IDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDN 215
+ +A S N++ ++ S LPA ID+ + + ++LD+ ++ YD +
Sbjct: 216 L--DAYGSTNNKKYVL--SAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPT 271
Query: 216 FTGAHSALY-------SSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNEN 268
TG + LY + S F+ + +++++L G +L LGL +G W
Sbjct: 272 LTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGW------TG 325
Query: 269 AVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSS----GKNWINFD 324
A GPA DG+ G + + DY + +L D YD S+ G W ++D
Sbjct: 326 AKNVSPWGPAT--DGAPG--TYETANEDYDK-LKTLGTDHYDAATGSAWRYDGTQWWSYD 380
Query: 325 GAEAITAKVSFAKEKGLLGYNAFQLSNDDKWEL 357
K + KGL G ++LS D EL
Sbjct: 381 NIATTKQKTDYIVSKGLGGGMWWELSGDRNGEL 413
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 129/322 (40%), Gaps = 58/322 (18%)
Query: 83 TVKRKNPSVVTLLSIRG-GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLS----- 136
++++NP + LLS+ G G FS + +R FI S+ + + YG G+DL
Sbjct: 100 ALRKQNPDLKVLLSVGGWGARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPV 159
Query: 137 ----GVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPID 192
G++ S+ + N L R V G +L+ + + + S +
Sbjct: 160 NGAWGLVASQPADRDNFTALLKSLREAV-------GEQKLVTIAVGANAESPKSWV-DVK 211
Query: 193 SMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSW--------FNTNDSIREWLKTGF 244
++ L+++++ YD ++ F +S LY SS W ++ + + +L G
Sbjct: 212 AVAPVLNYINLXTYDXAYGTQ-YF---NSNLYDSSHWPTVAAADKYSADFVVNNYLAAGL 267
Query: 245 PANKLVLGLPYHGYA----------WQLVNPNENAVGAPAAGP-AITMDGSMGYKSIKAF 293
++ LG+ ++G W + N V P GP I + S+GY K
Sbjct: 268 KPSQXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDT 327
Query: 294 IRDYGYGVASLYNDS---YDVNFFSSGK-NWINFDGAE-------------AITAKVSFA 336
Y V L ND + ++ K W++ AE ++ K +
Sbjct: 328 YVKYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYI 387
Query: 337 KEKGLLGYNAFQLSNDDKWELS 358
K KGL G ++ DD+ +L+
Sbjct: 388 KAKGLAGAXFWEYGADDQNQLA 409
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 73/343 (21%), Positives = 127/343 (37%), Gaps = 74/343 (21%)
Query: 34 WTSRSELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVT 93
W S P I TH+ +FA + + TL IN K S T + N ++
Sbjct: 15 WEFESLFPT--IEWKYLTHINASFARVKADG-TLNINPV-RKRIESVRETAHKHNVKILI 70
Query: 94 LLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILF 153
L+ + F++ +N RK I+ I + Y G D+ +
Sbjct: 71 SLA-KNSPGEFTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEE-------------Y 116
Query: 154 DEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSV--TYPIDSMLRN--------LDWVHV 203
D W S LL+ + +L + T ++S N D++++
Sbjct: 117 DNWDKNFPS---------LLVFARGLYLAKEKNXLXTCAVNSRWLNYGTEWEQYFDYINL 167
Query: 204 RAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREW-LKTGFPANKLVLGLPYHGYAWQL 262
+YD R FT +S+ + ++ W + +K+V GLP++GY+W+
Sbjct: 168 XSYD-----RGAFT---DKPVQHASYDDFVKDLKYWNEQCRASKSKIVGGLPFYGYSWE- 218
Query: 263 VNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWIN 322
E+ GA I G + + +A +D + GK + N
Sbjct: 219 ----ESLQGAVDDVRGIRYSGILKHLGNEAADKD------------------NIGKTYYN 256
Query: 323 FDGAEAITAKVSFAKEK---GLLGYNAFQLSNDDKWELSLAGM 362
G I K F KE G+ + FQ +++D ++L L +
Sbjct: 257 --GRPTIANKCKFIKENDYAGVXIWQLFQDAHNDNYDLKLINV 297
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 19/118 (16%)
Query: 238 EWLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRDY 297
E+ P+ K+++G+P +GY W + P + A A ++ +M Y++
Sbjct: 206 EFTIAQVPSRKIIIGVPLYGYDW--IIPYQPGTVASAISNQNAIERAMRYQA-------- 255
Query: 298 GYGVASLYNDSYDVNFF----SSGK-NWINFDGAEAITAKVSFAKEKGLLGYNAFQLS 350
Y+ Y FF G+ + + F+G +++ K+ +E L A+QL+
Sbjct: 256 ----PIQYSAEYQSPFFRYSDQQGRTHEVWFEGVRSMSRKMQIVREYRLQAIGAWQLT 309
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 27 SWIKGGYWTSRSELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFS-----SFT 81
+++ Y +SE +Q H++ A L++ T T++ ++ E + S T
Sbjct: 468 DYLRDAYQVQQSEAKANQ-------HISLVEAGLDAGTSTIHNDALIESNLREAATLSLT 520
Query: 82 NTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKS 116
N + P L + GGT I N + N+ +
Sbjct: 521 NEPGKNKPLTNMLQDVDGGTLITDHTQNSTENQAT 555
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 77/204 (37%), Gaps = 26/204 (12%)
Query: 66 TLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETA 125
TL Y K+ + F + + N ++L GG + + S F+ I
Sbjct: 54 TLPTFKPYNKTDTEFRAEISKLNAEGKSVLIALGGADAHIEL--KKSQESDFVNEIIRLV 111
Query: 126 RLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSG-NSQLLLVMKSHHLPAI 184
YGF GLD+ L + + + +V R G N + + + +L +
Sbjct: 112 DTYGFDGLDID--LEQAAIEAADNQTVIPSALKKVKDHYRKDGKNFMITMAPEFPYLTSS 169
Query: 185 DSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIRE------ 238
I+++ D+++ + YY D F + ++ S S ND +E
Sbjct: 170 GKYAPYINNLDSYYDFINPQ---YYNQGGDGFWDSDLNMWISQS----NDEKKEDFLYGL 222
Query: 239 --WLKTG------FPANKLVLGLP 254
L TG PA+K V+GLP
Sbjct: 223 TQRLVTGTDGFIKIPASKFVIGLP 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,505,455
Number of Sequences: 62578
Number of extensions: 479998
Number of successful extensions: 1278
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 54
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)