Query 041217
Match_columns 383
No_of_seqs 132 out of 1434
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02872 GH18_chitolectin_chito 100.0 3E-65 6.5E-70 493.8 31.1 326 30-366 1-355 (362)
2 cd02879 GH18_plant_chitinase_c 100.0 1.4E-64 3E-69 474.6 32.5 288 28-357 3-298 (299)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 7.8E-63 1.7E-67 481.0 32.2 329 29-366 1-406 (413)
4 smart00636 Glyco_18 Glycosyl h 100.0 1.2E-60 2.6E-65 457.1 33.0 314 29-352 1-334 (334)
5 cd02878 GH18_zymocin_alpha Zym 100.0 6.9E-60 1.5E-64 451.4 30.7 304 29-352 1-345 (345)
6 KOG2806 Chitinase [Carbohydrat 100.0 1.5E-59 3.2E-64 459.2 33.0 331 26-360 56-406 (432)
7 cd06548 GH18_chitinase The GH1 100.0 8.9E-59 1.9E-63 440.8 30.4 281 30-352 1-322 (322)
8 COG3325 ChiA Chitinase [Carboh 100.0 1.1E-57 2.3E-62 424.3 27.6 338 23-366 33-437 (441)
9 PF00704 Glyco_hydro_18: Glyco 100.0 4.3E-55 9.4E-60 420.4 29.3 318 28-352 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 1.2E-53 2.7E-58 405.0 26.4 289 29-353 4-311 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 2.1E-52 4.5E-57 400.5 32.5 298 26-361 34-348 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 3.7E-49 8.1E-54 374.0 27.5 287 29-354 3-307 (313)
13 cd06545 GH18_3CO4_chitinase Th 100.0 1.6E-45 3.5E-50 338.4 25.7 245 30-359 1-251 (253)
14 cd06549 GH18_trifunctional GH1 100.0 3.9E-45 8.4E-50 343.1 25.5 285 30-355 2-296 (298)
15 cd00598 GH18_chitinase-like Th 100.0 1.7E-35 3.8E-40 264.8 21.4 171 30-207 1-177 (210)
16 COG3858 Predicted glycosyl hyd 100.0 2E-33 4.3E-38 261.5 19.6 236 90-355 160-413 (423)
17 cd06546 GH18_CTS3_chitinase GH 100.0 3.1E-31 6.6E-36 242.7 24.8 197 29-255 1-217 (256)
18 cd06544 GH18_narbonin Narbonin 100.0 3.4E-31 7.3E-36 240.9 21.1 200 37-260 10-221 (253)
19 cd02871 GH18_chitinase_D-like 100.0 5E-29 1.1E-33 235.4 24.9 210 28-256 1-248 (312)
20 KOG2091 Predicted member of gl 100.0 4.4E-29 9.5E-34 222.3 18.1 288 28-352 79-384 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 2.5E-23 5.4E-28 191.7 20.1 193 28-257 1-207 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 8.4E-22 1.8E-26 181.8 21.8 200 30-256 3-229 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 1.3E-20 2.9E-25 175.0 17.6 150 47-211 23-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.8 4.3E-18 9.3E-23 148.1 17.8 176 23-211 21-215 (332)
25 KOG4701 Chitinase [Cell wall/m 99.4 2.7E-11 5.8E-16 111.6 20.5 204 25-256 24-257 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.4 5.3E-06 1.2E-10 79.0 12.6 154 80-261 51-216 (339)
27 PF03644 Glyco_hydro_85: Glyco 97.9 8.1E-05 1.7E-09 70.2 9.7 154 80-259 47-209 (311)
28 PF02638 DUF187: Glycosyl hydr 97.9 0.00018 3.8E-09 68.1 11.8 129 110-258 135-299 (311)
29 PF11340 DUF3142: Protein of u 97.4 0.0025 5.5E-08 54.4 11.3 114 112-257 24-138 (181)
30 PF13200 DUF4015: Putative gly 97.4 0.013 2.9E-07 55.1 17.2 99 115-222 123-240 (316)
31 KOG2331 Predicted glycosylhydr 95.3 0.31 6.8E-06 46.9 12.0 79 83-163 119-201 (526)
32 PF14883 GHL13: Hypothetical g 91.7 10 0.00022 35.2 14.7 188 48-255 29-262 (294)
33 COG3867 Arabinogalactan endo-1 91.5 12 0.00026 34.8 16.4 54 85-141 112-178 (403)
34 COG1306 Uncharacterized conser 91.4 1.4 3E-05 40.7 8.7 86 115-210 195-300 (400)
35 PF14871 GHL6: Hypothetical gl 90.3 1.1 2.4E-05 36.7 6.6 62 74-137 43-132 (132)
36 cd02810 DHOD_DHPD_FMN Dihydroo 89.1 4.6 0.0001 37.6 10.9 75 73-160 81-161 (289)
37 TIGR02104 pulA_typeI pullulana 85.4 7.6 0.00017 40.4 10.8 80 75-163 229-339 (605)
38 TIGR02402 trehalose_TreZ malto 84.7 5.8 0.00012 40.7 9.4 87 73-164 158-269 (542)
39 COG1649 Uncharacterized protei 83.9 2.6 5.7E-05 41.3 6.1 90 112-207 182-308 (418)
40 cd04734 OYE_like_3_FMN Old yel 82.6 15 0.00032 35.3 10.8 63 73-138 75-163 (343)
41 cd02932 OYE_YqiM_FMN Old yello 82.3 15 0.00032 35.1 10.7 46 50-97 47-97 (336)
42 COG1902 NemA NADH:flavin oxido 81.5 22 0.00048 34.4 11.5 26 74-101 82-107 (363)
43 cd04735 OYE_like_4_FMN Old yel 81.5 27 0.00058 33.7 12.2 66 70-138 73-166 (353)
44 COG4724 Endo-beta-N-acetylgluc 81.3 6.4 0.00014 37.9 7.4 78 79-158 131-217 (553)
45 cd02930 DCR_FMN 2,4-dienoyl-Co 81.1 20 0.00044 34.5 11.2 62 73-137 75-158 (353)
46 TIGR01370 cysRS possible cyste 80.7 11 0.00024 35.7 8.8 51 112-163 144-203 (315)
47 PRK12568 glycogen branching en 80.4 19 0.00041 38.2 11.3 89 73-163 317-452 (730)
48 PRK12313 glycogen branching en 79.9 18 0.0004 37.8 11.2 88 73-163 218-352 (633)
49 TIGR01515 branching_enzym alph 79.7 22 0.00048 37.1 11.6 89 73-163 204-339 (613)
50 PRK13523 NADPH dehydrogenase N 75.5 28 0.00061 33.4 10.2 86 50-138 51-164 (337)
51 PF00724 Oxidored_FMN: NADH:fl 74.6 25 0.00053 33.7 9.7 48 50-99 50-102 (341)
52 PRK14582 pgaB outer membrane N 74.4 13 0.00028 39.0 8.0 92 149-255 514-610 (671)
53 PLN02960 alpha-amylase 74.1 36 0.00077 36.8 11.2 88 73-163 464-601 (897)
54 PRK14581 hmsF outer membrane N 73.7 62 0.0013 34.1 12.7 190 49-255 347-610 (672)
55 PRK05402 glycogen branching en 73.1 37 0.00081 36.2 11.3 89 73-163 313-448 (726)
56 PRK10605 N-ethylmaleimide redu 72.8 51 0.0011 32.0 11.3 25 73-99 77-101 (362)
57 PRK14706 glycogen branching en 71.3 49 0.0011 34.7 11.5 89 73-163 215-348 (639)
58 PLN02495 oxidoreductase, actin 70.4 36 0.00078 33.3 9.7 55 75-142 98-153 (385)
59 PF14885 GHL15: Hypothetical g 70.4 6.7 0.00015 28.9 3.6 35 103-137 40-75 (79)
60 TIGR02100 glgX_debranch glycog 69.6 24 0.00051 37.4 8.8 83 74-158 244-365 (688)
61 PF02057 Glyco_hydro_59: Glyco 68.2 9.1 0.0002 39.7 5.2 81 79-164 116-201 (669)
62 PRK10785 maltodextrin glucosid 68.1 39 0.00084 35.2 10.0 55 109-163 303-363 (598)
63 TIGR02102 pullulan_Gpos pullul 67.9 45 0.00097 37.3 10.7 80 75-163 555-662 (1111)
64 cd06589 GH31 The enzymes of gl 67.6 25 0.00054 32.3 7.7 60 68-141 59-118 (265)
65 PRK03705 glycogen debranching 66.7 29 0.00063 36.5 8.7 62 75-138 242-338 (658)
66 PLN02411 12-oxophytodienoate r 66.7 14 0.00031 36.1 6.2 24 73-98 85-108 (391)
67 cd02929 TMADH_HD_FMN Trimethyl 66.5 28 0.00061 33.8 8.1 87 50-139 52-173 (370)
68 cd02801 DUS_like_FMN Dihydrour 66.4 44 0.00096 29.7 9.0 64 84-160 48-122 (231)
69 cd04733 OYE_like_2_FMN Old yel 66.4 31 0.00067 33.0 8.3 66 71-139 78-172 (338)
70 cd04747 OYE_like_5_FMN Old yel 66.2 37 0.00081 32.9 8.8 23 73-97 76-98 (361)
71 PF13199 Glyco_hydro_66: Glyco 66.2 15 0.00032 37.7 6.3 52 110-161 239-300 (559)
72 cd04740 DHOD_1B_like Dihydroor 65.1 62 0.0013 30.1 10.0 59 89-160 88-153 (296)
73 cd02803 OYE_like_FMN_family Ol 64.0 37 0.00079 32.2 8.3 46 50-97 47-97 (327)
74 PF07172 GRP: Glycine rich pro 63.1 5.4 0.00012 30.6 2.0 8 1-8 1-8 (95)
75 PLN02877 alpha-amylase/limit d 61.3 47 0.001 36.4 9.2 80 76-157 467-580 (970)
76 cd02940 DHPD_FMN Dihydropyrimi 60.9 95 0.0021 29.1 10.4 68 81-160 90-167 (299)
77 PRK07259 dihydroorotate dehydr 60.4 78 0.0017 29.6 9.7 58 90-160 91-156 (301)
78 TIGR02103 pullul_strch alpha-1 60.2 27 0.00059 38.0 7.2 80 75-163 404-516 (898)
79 PF04914 DltD_C: DltD C-termin 60.1 31 0.00067 28.1 6.0 59 75-135 36-95 (130)
80 TIGR00737 nifR3_yhdG putative 58.1 95 0.0021 29.3 10.0 44 85-141 57-100 (319)
81 PF14587 Glyco_hydr_30_2: O-Gl 57.8 56 0.0012 31.8 8.2 87 75-164 104-217 (384)
82 PRK02506 dihydroorotate dehydr 57.8 86 0.0019 29.6 9.5 79 69-160 71-156 (310)
83 PRK08318 dihydropyrimidine deh 57.7 91 0.002 30.8 10.1 66 83-160 92-167 (420)
84 PF00834 Ribul_P_3_epim: Ribul 56.3 53 0.0012 28.9 7.3 77 103-207 61-137 (201)
85 PLN03244 alpha-amylase; Provis 55.9 1.3E+02 0.0028 32.4 10.9 62 73-136 439-531 (872)
86 PRK07565 dihydroorotate dehydr 55.5 97 0.0021 29.5 9.6 77 70-160 82-164 (334)
87 PF05691 Raffinose_syn: Raffin 54.7 83 0.0018 33.4 9.4 89 74-162 287-416 (747)
88 COG1908 FrhD Coenzyme F420-red 54.5 25 0.00054 28.1 4.3 47 117-164 79-125 (132)
89 cd06592 GH31_glucosidase_KIAA1 53.5 59 0.0013 30.5 7.7 33 108-140 134-166 (303)
90 cd06591 GH31_xylosidase_XylS X 52.9 83 0.0018 29.8 8.6 72 66-140 57-160 (319)
91 PF07476 MAAL_C: Methylasparta 52.1 52 0.0011 29.4 6.4 134 77-244 49-190 (248)
92 cd06600 GH31_MGAM-like This fa 52.0 2E+02 0.0043 27.2 11.0 33 109-141 130-162 (317)
93 PRK14582 pgaB outer membrane N 50.5 1.7E+02 0.0038 30.9 11.0 48 319-366 322-373 (671)
94 PF08869 XisI: XisI protein; 49.4 9.5 0.00021 30.1 1.3 19 235-253 79-97 (111)
95 PRK10550 tRNA-dihydrouridine s 49.1 50 0.0011 31.3 6.4 94 90-204 62-168 (312)
96 PF02684 LpxB: Lipid-A-disacch 47.3 81 0.0018 30.7 7.6 110 76-204 13-140 (373)
97 COG0296 GlgB 1,4-alpha-glucan 47.2 61 0.0013 33.8 7.0 63 73-137 212-304 (628)
98 cd04741 DHOD_1A_like Dihydroor 46.7 1.6E+02 0.0035 27.5 9.4 79 69-160 68-156 (294)
99 cd06602 GH31_MGAM_SI_GAA This 46.3 1.1E+02 0.0024 29.3 8.3 34 108-141 134-167 (339)
100 cd02931 ER_like_FMN Enoate red 45.5 64 0.0014 31.5 6.7 22 74-97 82-103 (382)
101 PF10566 Glyco_hydro_97: Glyco 44.7 1.3E+02 0.0028 27.9 8.2 74 74-160 72-146 (273)
102 PRK03995 hypothetical protein; 44.2 68 0.0015 29.6 6.2 96 57-156 146-260 (267)
103 PF01120 Alpha_L_fucos: Alpha- 44.1 2.4E+02 0.0053 27.0 10.4 84 73-159 136-235 (346)
104 TIGR00742 yjbN tRNA dihydrouri 43.6 1.3E+02 0.0028 28.5 8.3 61 87-160 51-122 (318)
105 PF02065 Melibiase: Melibiase; 43.3 1.2E+02 0.0026 29.8 8.1 111 74-201 103-251 (394)
106 PRK00865 glutamate racemase; P 43.1 1.5E+02 0.0033 27.1 8.5 69 67-138 8-76 (261)
107 PRK11815 tRNA-dihydrouridine s 42.8 97 0.0021 29.6 7.4 42 87-141 61-102 (333)
108 PRK01060 endonuclease IV; Prov 41.4 52 0.0011 30.2 5.2 46 118-163 14-59 (281)
109 cd04739 DHOD_like Dihydroorota 40.9 2.4E+02 0.0053 26.7 9.8 76 71-160 81-162 (325)
110 PLN02711 Probable galactinol-- 40.1 1.3E+02 0.0028 32.0 8.0 88 75-162 305-433 (777)
111 KOG3035 Isoamyl acetate-hydrol 39.0 1.6E+02 0.0035 26.3 7.3 63 73-135 98-171 (245)
112 PRK14705 glycogen branching en 38.5 83 0.0018 35.6 6.8 89 73-163 813-948 (1224)
113 COG1453 Predicted oxidoreducta 38.2 1.7E+02 0.0037 28.3 7.9 28 115-142 33-60 (391)
114 PF08885 GSCFA: GSCFA family; 37.9 79 0.0017 28.9 5.6 24 76-99 153-176 (251)
115 PF12138 Spherulin4: Spherulat 36.9 2.9E+02 0.0063 25.2 9.2 73 74-162 52-134 (253)
116 PF01207 Dus: Dihydrouridine s 36.7 1.5E+02 0.0032 27.9 7.5 66 83-161 46-122 (309)
117 COG0763 LpxB Lipid A disacchar 36.6 1.3E+02 0.0028 29.3 7.0 109 77-204 17-143 (381)
118 cd04738 DHOD_2_like Dihydrooro 36.6 2.3E+02 0.0049 26.9 8.8 75 80-161 117-197 (327)
119 PRK08005 epimerase; Validated 35.7 1.3E+02 0.0029 26.7 6.5 77 103-207 62-138 (210)
120 PF04468 PSP1: PSP1 C-terminal 35.7 86 0.0019 23.5 4.6 51 111-161 21-80 (88)
121 PRK09505 malS alpha-amylase; R 35.1 76 0.0016 33.6 5.7 29 110-138 435-463 (683)
122 cd06599 GH31_glycosidase_Aec37 34.7 1.7E+02 0.0036 27.7 7.6 70 68-140 66-169 (317)
123 cd00019 AP2Ec AP endonuclease 34.1 1.1E+02 0.0024 28.0 6.2 45 118-162 12-56 (279)
124 PRK14510 putative bifunctional 34.0 1.9E+02 0.004 33.1 8.8 83 74-163 246-365 (1221)
125 PF07582 AP_endonuc_2_N: AP en 34.0 87 0.0019 21.3 3.9 40 119-159 3-43 (55)
126 cd01841 NnaC_like NnaC (CMP-Ne 33.7 1.5E+02 0.0031 24.7 6.4 63 73-136 73-137 (174)
127 cd06598 GH31_transferase_CtsZ 33.5 1.7E+02 0.0037 27.6 7.4 71 66-140 61-165 (317)
128 PRK09722 allulose-6-phosphate 33.5 1.5E+02 0.0032 26.8 6.5 78 103-207 63-140 (229)
129 PRK05286 dihydroorotate dehydr 33.1 2.3E+02 0.0049 27.2 8.3 75 80-161 127-206 (344)
130 PF07364 DUF1485: Protein of u 32.7 2.3E+02 0.0051 26.5 8.0 110 76-203 46-157 (292)
131 COG3410 Uncharacterized conser 32.4 78 0.0017 26.9 4.2 44 109-155 145-188 (191)
132 smart00812 Alpha_L_fucos Alpha 31.8 2.3E+02 0.0049 27.8 8.0 83 73-158 126-221 (384)
133 PF07745 Glyco_hydro_53: Glyco 31.8 2.3E+02 0.005 27.1 7.9 121 78-208 61-209 (332)
134 COG5510 Predicted small secret 31.7 50 0.0011 21.2 2.2 15 1-15 1-15 (44)
135 PLN02982 galactinol-raffinose 31.4 2.1E+02 0.0045 30.7 7.9 65 75-139 390-492 (865)
136 PRK14866 hypothetical protein; 31.3 94 0.002 31.0 5.3 96 57-156 151-263 (451)
137 cd06595 GH31_xylosidase_XylS-l 31.2 2.4E+02 0.0053 26.2 8.0 73 66-140 65-160 (292)
138 PF02055 Glyco_hydro_30: O-Gly 30.8 1.9E+02 0.0041 29.4 7.5 126 78-207 156-312 (496)
139 PRK08091 ribulose-phosphate 3- 30.3 2E+02 0.0043 25.9 6.8 80 103-208 72-151 (228)
140 PF10731 Anophelin: Thrombin i 29.7 68 0.0015 22.1 2.8 19 1-19 1-19 (65)
141 TIGR01093 aroD 3-dehydroquinat 29.5 4.1E+02 0.0088 23.6 12.9 168 89-293 56-227 (228)
142 COG1080 PtsA Phosphoenolpyruva 28.9 2.8E+02 0.0061 28.6 8.2 134 110-249 364-499 (574)
143 PRK09441 cytoplasmic alpha-amy 28.8 1.3E+02 0.0027 30.4 5.9 46 110-162 207-252 (479)
144 TIGR01839 PHA_synth_II poly(R) 28.6 1.3E+02 0.0028 31.0 5.9 50 119-168 237-286 (560)
145 PF05219 DREV: DREV methyltran 28.5 2.3E+02 0.005 26.1 6.9 104 74-184 75-196 (265)
146 PF04413 Glycos_transf_N: 3-De 28.4 3.9E+02 0.0084 23.0 10.6 134 76-252 36-177 (186)
147 TIGR03234 OH-pyruv-isom hydrox 28.3 98 0.0021 27.9 4.7 20 118-137 16-35 (254)
148 COG0162 TyrS Tyrosyl-tRNA synt 27.9 3E+02 0.0064 27.1 8.0 68 87-158 61-138 (401)
149 COG3053 CitC Citrate lyase syn 27.7 5.1E+02 0.011 24.4 8.9 56 144-206 125-180 (352)
150 PRK10081 entericidin B membran 27.6 62 0.0014 21.3 2.3 8 1-8 1-8 (48)
151 PF00128 Alpha-amylase: Alpha 27.6 1.3E+02 0.0027 27.6 5.4 47 110-164 143-189 (316)
152 cd01828 sialate_O-acetylestera 27.3 2.5E+02 0.0053 23.2 6.7 60 74-135 71-130 (169)
153 COG0036 Rpe Pentose-5-phosphat 27.1 3.1E+02 0.0067 24.5 7.3 77 103-207 65-141 (220)
154 cd01827 sialate_O-acetylestera 27.0 2.4E+02 0.0052 23.7 6.7 61 74-135 92-154 (188)
155 TIGR01037 pyrD_sub1_fam dihydr 26.9 5.1E+02 0.011 24.0 9.9 89 90-204 90-189 (300)
156 COG1891 Uncharacterized protei 26.5 4.2E+02 0.0092 22.9 9.3 170 129-353 20-193 (235)
157 PF14443 DBC1: DBC1 25.8 70 0.0015 25.8 2.7 39 93-135 18-58 (126)
158 COG5185 HEC1 Protein involved 25.7 87 0.0019 31.1 3.8 55 105-161 97-151 (622)
159 smart00633 Glyco_10 Glycosyl h 25.6 4.8E+02 0.01 23.6 8.7 71 79-157 107-179 (254)
160 cd02933 OYE_like_FMN Old yello 25.2 2.8E+02 0.0061 26.5 7.4 25 73-99 75-99 (338)
161 cd06594 GH31_glucosidase_YihQ 25.2 2.7E+02 0.0059 26.3 7.2 64 73-138 69-165 (317)
162 PRK08745 ribulose-phosphate 3- 24.8 2.4E+02 0.0052 25.2 6.4 78 103-208 66-143 (223)
163 PRK08255 salicylyl-CoA 5-hydro 24.6 5.4E+02 0.012 27.7 10.1 24 114-138 550-573 (765)
164 TIGR00067 glut_race glutamate 24.1 4.7E+02 0.01 23.7 8.3 55 81-138 14-70 (251)
165 TIGR00542 hxl6Piso_put hexulos 24.1 1.3E+02 0.0029 27.5 4.8 47 118-164 18-65 (279)
166 cd01825 SGNH_hydrolase_peri1 S 24.0 1.5E+02 0.0033 24.8 4.9 61 73-134 79-142 (189)
167 COG0796 MurI Glutamate racemas 23.7 5.7E+02 0.012 23.7 8.6 81 68-160 9-90 (269)
168 TIGR01651 CobT cobaltochelatas 23.7 7.3E+02 0.016 25.8 10.1 127 1-128 405-555 (600)
169 TIGR02803 ExbD_1 TonB system t 23.6 3.7E+02 0.008 21.2 8.5 65 58-135 52-118 (122)
170 PRK08883 ribulose-phosphate 3- 23.2 2.7E+02 0.0058 24.8 6.4 78 103-208 62-139 (220)
171 KOG1552 Predicted alpha/beta h 23.1 1.3E+02 0.0028 27.6 4.2 46 200-251 88-134 (258)
172 PRK10128 2-keto-3-deoxy-L-rham 22.7 3E+02 0.0066 25.4 6.8 36 120-157 30-65 (267)
173 TIGR03849 arch_ComA phosphosul 22.6 1.6E+02 0.0036 26.6 4.8 70 75-157 41-110 (237)
174 TIGR01036 pyrD_sub2 dihydrooro 22.4 6.8E+02 0.015 23.8 9.7 77 78-161 122-203 (335)
175 PF12876 Cellulase-like: Sugar 22.2 1.6E+02 0.0035 21.7 4.1 52 145-206 36-88 (88)
176 PF14606 Lipase_GDSL_3: GDSL-l 22.2 3.5E+02 0.0075 23.4 6.5 62 74-135 77-141 (178)
177 cd07321 Extradiol_Dioxygenase_ 21.8 83 0.0018 23.0 2.3 28 104-131 9-36 (77)
178 KOG3111 D-ribulose-5-phosphate 21.7 3.8E+02 0.0083 23.5 6.6 77 103-207 68-144 (224)
179 PF07833 Cu_amine_oxidN1: Copp 21.3 2.6E+02 0.0056 20.3 5.1 35 284-323 6-40 (93)
180 TIGR03239 GarL 2-dehydro-3-deo 21.2 3.5E+02 0.0076 24.6 6.8 35 120-156 24-58 (249)
181 COG2342 Predicted extracellula 21.1 4.5E+02 0.0097 24.5 7.2 49 115-163 125-183 (300)
182 PRK10558 alpha-dehydro-beta-de 21.0 3.4E+02 0.0074 24.8 6.7 35 120-156 31-65 (256)
183 cd08578 GDPD_NUC-2_fungi Putat 20.9 2.5E+02 0.0053 26.5 5.9 29 110-138 223-251 (300)
184 PLN02334 ribulose-phosphate 3- 20.5 5E+02 0.011 23.0 7.7 67 122-207 81-149 (229)
185 PF04414 tRNA_deacylase: D-ami 20.4 3.8E+02 0.0083 23.8 6.6 97 57-156 94-207 (213)
186 cd06593 GH31_xylosidase_YicI Y 20.3 4.1E+02 0.0088 24.8 7.4 29 109-138 130-158 (308)
187 PRK12677 xylose isomerase; Pro 20.3 2.9E+02 0.0063 27.0 6.4 45 118-163 33-79 (384)
188 PF05984 Cytomega_UL20A: Cytom 20.2 1.2E+02 0.0027 22.3 2.9 20 1-20 1-21 (100)
189 PRK02412 aroD 3-dehydroquinate 20.1 6.6E+02 0.014 22.8 11.5 51 246-296 198-248 (253)
No 1
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=3e-65 Score=493.81 Aligned_cols=326 Identities=33% Similarity=0.536 Sum_probs=285.4
Q ss_pred EEEEecC---C----CCCCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCc----chhhHHHHHHHHHhcCCCceEEEEEe
Q 041217 30 KGGYWTS---R----SELPVSQINSGLFTHLTCAFAYLNSSTFTLYINST----YEKSFSSFTNTVKRKNPSVVTLLSIR 98 (383)
Q Consensus 30 ~~~Y~~~---~----~~~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lk~~~p~~kvllsig 98 (383)
|+|||+. . ..|.++++|.++||||+|+|+.++++| ++...++ ....+.++. .+|+++|++||+++||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g-~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiG 78 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDG-NIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIG 78 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCC-CEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEc
Confidence 5899988 2 268899999999999999999999986 5444443 345566775 6999999999999999
Q ss_pred cCCc---cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC----CcchhhHHHHHHHHHHHHHHHhhccCCcc
Q 041217 99 GGTA---IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK----STNMTNLGILFDEWRAEVTSEARNSGNSQ 171 (383)
Q Consensus 99 g~~~---~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~----~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 171 (383)
||+. .|+.++++++.|++|++++++++++|+|||||||||+|.. ++++++|+.||++||++|++.+ ++
T Consensus 79 G~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~-----~~ 153 (362)
T cd02872 79 GWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEA-----PR 153 (362)
T ss_pred CCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhC-----cC
Confidence 9875 7999999999999999999999999999999999999974 5789999999999999998753 36
Q ss_pred eEEEEEecCCCccccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCC------CCCcHHHHHHHHHHcCCC
Q 041217 172 LLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSS------SWFNTNDSIREWLKTGFP 245 (383)
Q Consensus 172 ~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~------~~~~~~~~~~~~~~~gvp 245 (383)
++|++++|+.+......||++++.+++|+|+||+||++++| ...++++|||+... ...+++.+++.|++.|+|
T Consensus 154 ~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~-~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp 232 (362)
T cd02872 154 LLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSW-EGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAP 232 (362)
T ss_pred eEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCC-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCC
Confidence 89999999876555556999999999999999999999997 45789999998432 236899999999999999
Q ss_pred CCcEEEecccceeeeeecCCCCCCCCCCCcCCC-----CCCCCcccHHHHHHHHhhCCCceEEEEcCCceeeEEEeCCEE
Q 041217 246 ANKLVLGLPYHGYAWQLVNPNENAVGAPAAGPA-----ITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNW 320 (383)
Q Consensus 246 ~~Kivlglp~yG~~~~~~~~~~~~~~~~~~g~~-----~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~~~~~~ 320 (383)
++||+||||+||+.|++.++.++++|+|..|++ +.+.|.++|.|||+.+ ..+ ++..||+.+.+||.+.+++|
T Consensus 233 ~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~--~~~~~D~~~~~~y~~~~~~~ 309 (362)
T cd02872 233 PEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSG--WTVVWDDEQKVPYAYKGNQW 309 (362)
T ss_pred HHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCC--cEEEEeCCcceeEEEECCEE
Confidence 999999999999999999888888888887654 2367889999999988 667 99999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCcEEEEEecCCCCChhHHHHHHHhhc
Q 041217 321 INFDGAEAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQLLI 366 (383)
Q Consensus 321 i~ydd~~S~~~K~~~~~~~glgGv~iW~l~~Dd~~~l~~~~~~~l~ 366 (383)
|+|||++|++.|++|++++||||+++|++++||+.+.|+....||.
T Consensus 310 v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl 355 (362)
T cd02872 310 VGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLL 355 (362)
T ss_pred EEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHH
Confidence 9999999999999999999999999999999999999988544554
No 2
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=1.4e-64 Score=474.61 Aligned_cols=288 Identities=50% Similarity=0.845 Sum_probs=263.0
Q ss_pred cEEEEEecCCC-CCCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCc---c
Q 041217 28 WIKGGYWTSRS-ELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA---I 103 (383)
Q Consensus 28 ~~~~~Y~~~~~-~~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~---~ 103 (383)
.+++|||++|. .+.+++|+.++||||+|+|+.++++++.+...+..+..+..+.+.+|+++|++|+++|||||+. .
T Consensus 3 ~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~~s~~ 82 (299)
T cd02879 3 IVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGSDSSA 82 (299)
T ss_pred eEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCch
Confidence 47899999965 9999999999999999999999998878877776666778888889999999999999999875 7
Q ss_pred chhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCc
Q 041217 104 FSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPA 183 (383)
Q Consensus 104 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~ 183 (383)
|+.++++++.|++|++++++++++|+|||||||||+|..++++++|+.||++||++|+++++..++++++||+++|+.+.
T Consensus 83 fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls~av~~~~~ 162 (299)
T cd02879 83 FAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSPI 162 (299)
T ss_pred hhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEeecccchh
Confidence 99999999999999999999999999999999999998888999999999999999998776666678999999987665
Q ss_pred c----ccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcEEEecccceee
Q 041217 184 I----DSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYA 259 (383)
Q Consensus 184 ~----~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Kivlglp~yG~~ 259 (383)
. ....|++++|.++||||+||+||+|++|....++++|||+.+.+..+++.+|+.|++.|+|++|||||+|||||.
T Consensus 163 ~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~YGr~ 242 (299)
T cd02879 163 LFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLYGRA 242 (299)
T ss_pred hccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEecccccc
Confidence 4 334589999999999999999999999987778999999987777899999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCcCCCCCCCCcccHHHHHHHHhhCCCceEEEEcCCceeeEEEeCCEEEEeCCHHHHHHHHHHHHHc
Q 041217 260 WQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWINFDGAEAITAKVSFAKEK 339 (383)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~ 339 (383)
|++ ||+.+.++|.+.+++||+|||++|++.|++|++++
T Consensus 243 ~~~------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~~~ 280 (299)
T cd02879 243 WTL------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAKQK 280 (299)
T ss_pred ccc------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHHhC
Confidence 952 77778889999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCChhH
Q 041217 340 GLLGYNAFQLSNDDKWEL 357 (383)
Q Consensus 340 glgGv~iW~l~~Dd~~~l 357 (383)
||||+|+|++++||+..|
T Consensus 281 ~lgGv~~W~l~~Dd~~~~ 298 (299)
T cd02879 281 GLLGYFAWAVGYDDNNWL 298 (299)
T ss_pred CCCeEEEEEeecCCcccc
Confidence 999999999999998765
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=7.8e-63 Score=481.02 Aligned_cols=329 Identities=22% Similarity=0.415 Sum_probs=269.8
Q ss_pred EEEEEecC-------CCCCCCCCCCCCC--CcEEEEEEEEEeCCCcEEEeCCcc----hhhHHHHHHHHHhcCCCceEEE
Q 041217 29 IKGGYWTS-------RSELPVSQINSGL--FTHLTCAFAYLNSSTFTLYINSTY----EKSFSSFTNTVKRKNPSVVTLL 95 (383)
Q Consensus 29 ~~~~Y~~~-------~~~~~~~~i~~~~--~thii~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lk~~~p~~kvll 95 (383)
+++|||+. ...+.+++||..+ ||||+|+|+.++++++.+...++. ...+..+. .||+++|++|+|+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAIT-SLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHH-HHHhhCCCCeEEE
Confidence 36899988 2367899999865 999999999999987777665542 24566776 6999999999999
Q ss_pred EEecCCc--------cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC-------------------------
Q 041217 96 SIRGGTA--------IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK------------------------- 142 (383)
Q Consensus 96 sigg~~~--------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~------------------------- 142 (383)
|||||+. .|+.++++++.|++|+++++++|++|+|||||||||+|..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 9999963 4999999999999999999999999999999999999852
Q ss_pred -----CcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhhccccEEEeeeccCCCCCCC-CC
Q 041217 143 -----STNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRD-NF 216 (383)
Q Consensus 143 -----~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~-~~ 216 (383)
++++++|+.||++||++|++. +++|++++++.... ...||+++|.++||||+||+||+|++|.. ..
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~-------~~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~~ 231 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPD-------GLLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPEE 231 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhccc-------CcEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCCc
Confidence 457899999999999999753 47889988653322 12489999999999999999999998765 36
Q ss_pred CCCCCCCCCCC---CCCcHHHHHHHHHHcCCCCCcEEEecccceeeeeecCCCC-CCC--CCCCc-----CCCCCCCCcc
Q 041217 217 TGAHSALYSSS---SWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNE-NAV--GAPAA-----GPAITMDGSM 285 (383)
Q Consensus 217 ~~~~apl~~~~---~~~~~~~~~~~~~~~gvp~~Kivlglp~yG~~~~~~~~~~-~~~--~~~~~-----g~~~~~~g~~ 285 (383)
++++|||+... ..++++.+++.|++.|+|++||||||||||+.|++.++.. .+. .++.. |+.+.++|.+
T Consensus 232 ~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l 311 (413)
T cd02873 232 ADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLL 311 (413)
T ss_pred cCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccc
Confidence 89999998543 2468999999999999999999999999999999886532 221 12333 3344567899
Q ss_pred cHHHHHHHHhhCC------CceEEEEcCCce-eeEEEe-------CCEEEEeCCHHHHHHHHHHHHHcCCcEEEEEecCC
Q 041217 286 GYKSIKAFIRDYG------YGVASLYNDSYD-VNFFSS-------GKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSN 351 (383)
Q Consensus 286 ~y~ei~~~~~~~~------~~~~~~~D~~~~-~~y~~~-------~~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~l~~ 351 (383)
+|.|||+.+...+ ..++..||++.+ .+|.+. .+.||+|||++|++.|++|++++||||+|+|++++
T Consensus 312 ~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~ 391 (413)
T cd02873 312 SWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSL 391 (413)
T ss_pred cHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeec
Confidence 9999999876532 015677898776 588872 25799999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhc
Q 041217 352 DDKWELSLAGMQLLI 366 (383)
Q Consensus 352 Dd~~~l~~~~~~~l~ 366 (383)
||+.+.|+....||+
T Consensus 392 DD~~g~c~~~~~pll 406 (413)
T cd02873 392 DDFRGQCTGDKFPIL 406 (413)
T ss_pred CcCCCCcCCCCChHH
Confidence 999999966555554
No 4
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=1.2e-60 Score=457.13 Aligned_cols=314 Identities=31% Similarity=0.574 Sum_probs=273.6
Q ss_pred EEEEEecCCC----CCCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchh--hHHHHHHHHHhcCCCceEEEEEecCCc
Q 041217 29 IKGGYWTSRS----ELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEK--SFSSFTNTVKRKNPSVVTLLSIRGGTA 102 (383)
Q Consensus 29 ~~~~Y~~~~~----~~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~lk~~~p~~kvllsigg~~~ 102 (383)
+++|||+++. .+.+++++.++||||+|+|+.++++| ++.+.++... .+..+. .+|+++|++|++++||||..
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQLK-ALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHHH-HHHHhCCCCEEEEEEeCCCC
Confidence 3699999954 38899999999999999999999965 7777655443 466665 68999999999999999875
Q ss_pred --cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCC-cchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEec
Q 041217 103 --IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKS-TNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSH 179 (383)
Q Consensus 103 --~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~ 179 (383)
.|+.++.|++.|++|++++++++++|+|||||||||+|... .++++|+.||++||++|++..+. +++++|++++|
T Consensus 79 s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~~--~~~~~lsi~v~ 156 (334)
T smart00636 79 SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGAE--GKGYLLTIAVP 156 (334)
T ss_pred CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhccc--CCceEEEEEec
Confidence 79999999999999999999999999999999999999763 57889999999999999876221 35799999999
Q ss_pred CCCccccCCCC-hhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCC---CCcHHHHHHHHHHcCCCCCcEEEeccc
Q 041217 180 HLPAIDSVTYP-IDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSS---WFNTNDSIREWLKTGFPANKLVLGLPY 255 (383)
Q Consensus 180 ~~~~~~~~~~~-~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~---~~~~~~~~~~~~~~gvp~~Kivlglp~ 255 (383)
+.+......|+ +.++.+++|+|+||+||++++|. ..++++||++.... ..+++.+++.|++.|+|++||+|||||
T Consensus 157 ~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~-~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~ 235 (334)
T smart00636 157 AGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWS-NPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLGIPF 235 (334)
T ss_pred CChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCC-CCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEeecc
Confidence 87655444578 59999999999999999999874 47999999984332 468999999999999999999999999
Q ss_pred ceeeeeecCCCCCCCCCCCcCCCC-----CCCCcccHHHHHHHHhhCCCceEEEEcCCceeeEEEe-C-CEEEEeCCHHH
Q 041217 256 HGYAWQLVNPNENAVGAPAAGPAI-----TMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSS-G-KNWINFDGAEA 328 (383)
Q Consensus 256 yG~~~~~~~~~~~~~~~~~~g~~~-----~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~~-~-~~~i~ydd~~S 328 (383)
||+.|++.++.++++++|..|++. .+.+.++|.|+|+.+ + ++..||+++.++|.+. + ++||+|||++|
T Consensus 236 YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~--~~~~~d~~~~~~y~~~~~~~~~v~ydd~~S 310 (334)
T smart00636 236 YGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G--ATVVWDDTAKAPYAYNPGTGQWVSYDDPRS 310 (334)
T ss_pred ccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C--cEEEEcCCCceeEEEECCCCEEEEcCCHHH
Confidence 999999999888888898877643 357889999999965 5 8999999999999995 4 59999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCC
Q 041217 329 ITAKVSFAKEKGLLGYNAFQLSND 352 (383)
Q Consensus 329 ~~~K~~~~~~~glgGv~iW~l~~D 352 (383)
++.|++|++++||||+++|+|++|
T Consensus 311 i~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 311 IKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHhCCCCeEEEEeecCC
Confidence 999999999999999999999997
No 5
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=6.9e-60 Score=451.42 Aligned_cols=304 Identities=20% Similarity=0.322 Sum_probs=251.3
Q ss_pred EEEEEecCC------CCCCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCc
Q 041217 29 IKGGYWTSR------SELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA 102 (383)
Q Consensus 29 ~~~~Y~~~~------~~~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~ 102 (383)
+++|||+++ ..+.+++|+.++||||+|+|+.+++++ ++...+ ....+..+. .+| ++|+++|||||+.
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~-~~k----~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFK-KLK----GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHH-hhc----CcEEEEEEeCCCC
Confidence 468999995 367899999999999999999999876 777653 244455554 233 3999999999875
Q ss_pred --------cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC----------CcchhhHHHHHHHHHHHHHHHh
Q 041217 103 --------IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK----------STNMTNLGILFDEWRAEVTSEA 164 (383)
Q Consensus 103 --------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~----------~~~~~~~~~ll~~l~~~l~~~~ 164 (383)
.|+.++ +++.|++|++++++++++|+|||||||||+|.. ++++++|+.||++||++|++
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~-- 150 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS-- 150 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc--
Confidence 277888 999999999999999999999999999999863 35889999999999999964
Q ss_pred hccCCcceEEEEEecCCCccccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCC-------CCCCCCcHHHHHH
Q 041217 165 RNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALY-------SSSSWFNTNDSIR 237 (383)
Q Consensus 165 ~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~-------~~~~~~~~~~~~~ 237 (383)
+++|++++|+.+... ..||++++.+++|||+||+||+|++|... +.+++|.. ......+++++|+
T Consensus 151 ------~~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~~~-~~~~~p~~p~~~~~~~~~~~~~~~~~v~ 222 (345)
T cd02878 151 ------GKSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWDYG-NKWASPGCPAGNCLRSHVNKTETLDALS 222 (345)
T ss_pred ------CcEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcCcc-CCcCCCCCCcccccccCCCchhHHHHHH
Confidence 478999998765443 35899999999999999999999998643 33333311 1112235889999
Q ss_pred HHHHcCCCCCcEEEecccceeeeeecCCCCCCCCCCCcCCCC--------CCCCcccHHHHHHHH-hhCCCceEEEEcCC
Q 041217 238 EWLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGAPAAGPAI--------TMDGSMGYKSIKAFI-RDYGYGVASLYNDS 308 (383)
Q Consensus 238 ~~~~~gvp~~Kivlglp~yG~~~~~~~~~~~~~~~~~~g~~~--------~~~g~~~y~ei~~~~-~~~~~~~~~~~D~~ 308 (383)
.|++.|+|++||+||+||||+.|++.++.++++++|+.|++. ...+.+.|.|+|..+ ...+ ++..||+.
T Consensus 223 ~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~--~~~~~d~~ 300 (345)
T cd02878 223 MITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSK--NKRWYDTD 300 (345)
T ss_pred HHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCC--CcEEEecC
Confidence 999999999999999999999999999999999999987642 133445569998854 4455 89999999
Q ss_pred ceeeEE-EeCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 041217 309 YDVNFF-SSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSND 352 (383)
Q Consensus 309 ~~~~y~-~~~~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~l~~D 352 (383)
+.++|. +.+++||+|||++|++.|++|++++||||+++|+|++|
T Consensus 301 ~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 301 SDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 999987 56779999999999999999999999999999999987
No 6
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-59 Score=459.16 Aligned_cols=331 Identities=27% Similarity=0.466 Sum_probs=284.7
Q ss_pred CCcEEEEEecCCC-CCCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecC-Cc-
Q 041217 26 TSWIKGGYWTSRS-ELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGG-TA- 102 (383)
Q Consensus 26 ~~~~~~~Y~~~~~-~~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~-~~- 102 (383)
....++||+.+.. ...+.+++..+|||++|+|+.++.++..+...+.....+-.+.+.+|.++|++|+|+||||| ..
T Consensus 56 c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~ns 135 (432)
T KOG2806|consen 56 CEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHGNS 135 (432)
T ss_pred ccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCCCc
Confidence 3456688888877 89999999999999999999999988666555555567778888999999999999999999 43
Q ss_pred -cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCC-CCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecC
Q 041217 103 -IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPS-KSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHH 180 (383)
Q Consensus 103 -~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~ 180 (383)
.|+.+++|++.|+.||+++++++++|+|||||||||||. .+.++.+|..|++|||++|.++.+...++...++.++..
T Consensus 136 ~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~~~~~~l~~~v~~ 215 (432)
T KOG2806|consen 136 GLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSPDTAKVLEAVVAD 215 (432)
T ss_pred cchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccCCccceeeecccc
Confidence 899999999999999999999999999999999999996 558999999999999999999988777666455555554
Q ss_pred CCc-cccCCCChhhhhccccEEEeeeccCCCCCCCC-CCCCCCCCCCCC----CCCcHHHHHHHHHHcCCCCCcEEEecc
Q 041217 181 LPA-IDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDN-FTGAHSALYSSS----SWFNTNDSIREWLKTGFPANKLVLGLP 254 (383)
Q Consensus 181 ~~~-~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~-~~~~~apl~~~~----~~~~~~~~~~~~~~~gvp~~Kivlglp 254 (383)
++. ....+||+.+|.+++||||||+||++|+|... .+||.|||+.+. ..++++..+++|++.|.|++|++||+|
T Consensus 216 ~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~gip 295 (432)
T KOG2806|consen 216 SKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVLALP 295 (432)
T ss_pred CccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEEEEe
Confidence 433 56667999999999999999999999999764 899999999643 347999999999999999999999999
Q ss_pred cceeeeeecCCCCCCCCCCCcCCC------CCCCCcccHHHHHHHHhhCCCceEEEEcCCceeeEEEe--CCEEEEeCCH
Q 041217 255 YHGYAWQLVNPNENAVGAPAAGPA------ITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSS--GKNWINFDGA 326 (383)
Q Consensus 255 ~yG~~~~~~~~~~~~~~~~~~g~~------~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~~--~~~~i~ydd~ 326 (383)
|||+.|++.+...+ ++.+..+++ ...+|.++|.|||+...+.+ ...||+.++++|+++ +++||+|||+
T Consensus 296 ~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---~~~~d~~~~~~Y~~~~~~~~wvtyen~ 371 (432)
T KOG2806|consen 296 FYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---VTHWDEETQTPYLYNIPYDQWVTYENE 371 (432)
T ss_pred cceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC---CceecCCceeeeEEecCCCeEEecCCH
Confidence 99999999986554 444333322 22578899999999655433 689999999999998 9999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCCChhH-HHH
Q 041217 327 EAITAKVSFAKEKGLLGYNAFQLSNDDKWEL-SLA 360 (383)
Q Consensus 327 ~S~~~K~~~~~~~glgGv~iW~l~~Dd~~~l-~~~ 360 (383)
+|++.|++|++++||||+++|++++||+.+. |++
T Consensus 372 ~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~ 406 (432)
T KOG2806|consen 372 RSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNA 406 (432)
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCCCCCccccc
Confidence 9999999999999999999999999997765 553
No 7
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=8.9e-59 Score=440.77 Aligned_cols=281 Identities=28% Similarity=0.498 Sum_probs=244.5
Q ss_pred EEEEecCCCCC----CCC-CCCCCCCcEEEEEEEEEeCCCcEEEeC-------------------CcchhhHHHHHHHHH
Q 041217 30 KGGYWTSRSEL----PVS-QINSGLFTHLTCAFAYLNSSTFTLYIN-------------------STYEKSFSSFTNTVK 85 (383)
Q Consensus 30 ~~~Y~~~~~~~----~~~-~i~~~~~thii~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~lk 85 (383)
|+|||++|..+ .+. +|+..+||||+|+|+.+++++..+... +.....+..+. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 58999995444 344 599999999999999999988554322 11234567776 699
Q ss_pred hcCCCceEEEEEecCCc--cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC---------CcchhhHHHHHH
Q 041217 86 RKNPSVVTLLSIRGGTA--IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK---------STNMTNLGILFD 154 (383)
Q Consensus 86 ~~~p~~kvllsigg~~~--~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~---------~~~~~~~~~ll~ 154 (383)
+++|++||+++||||+. .|+.++++++.|++|++++++++++|+|||||||||+|.. ++++++|+.||+
T Consensus 80 ~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~ 159 (322)
T cd06548 80 QKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLK 159 (322)
T ss_pred HhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHH
Confidence 99999999999999876 8999999999999999999999999999999999999975 578999999999
Q ss_pred HHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCC----CCC
Q 041217 155 EWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSS----SWF 230 (383)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~----~~~ 230 (383)
+||++|++.++..+ ++++||+++|+.+.... .+++++|.++||+|++|+||++++|. ..++++|||+... ...
T Consensus 160 ~Lr~~l~~~~~~~~-~~~~Ls~av~~~~~~~~-~~~~~~l~~~vD~vnlMtYD~~g~w~-~~~g~~spL~~~~~~~~~~~ 236 (322)
T cd06548 160 ELREALDALGAETG-RKYLLTIAAPAGPDKLD-KLEVAEIAKYLDFINLMTYDFHGAWS-NTTGHHSNLYASPADPPGGY 236 (322)
T ss_pred HHHHHHHHhhhccC-CceEEEEEccCCHHHHh-cCCHHHHhhcCCEEEEEEeeccCCCC-CCCCCCCCCCCCCCCCCCCc
Confidence 99999998765443 36899999998765443 47899999999999999999999985 6799999998533 357
Q ss_pred cHHHHHHHHHHcCCCCCcEEEecccceeeeeecCCCCCCCCCCCcCCCCCCCCcccHHHHHHHHhhCCCceEEEEcCCce
Q 041217 231 NTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYD 310 (383)
Q Consensus 231 ~~~~~~~~~~~~gvp~~Kivlglp~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~ 310 (383)
+++.+++.|++.|+|++|||||||+||+.|++ ++..||+.+.
T Consensus 237 ~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------------------~~~~~D~~~~ 278 (322)
T cd06548 237 SVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------------------YTRYWDEVAK 278 (322)
T ss_pred cHHHHHHHHHHcCCCHHHeEEEecccccccCC--------------------------------------cEEEEcCCcc
Confidence 99999999999999999999999999999952 3579999999
Q ss_pred eeEEEeC--CEEEEeCCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 041217 311 VNFFSSG--KNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSND 352 (383)
Q Consensus 311 ~~y~~~~--~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~l~~D 352 (383)
+||.+++ ++||+|||++|++.|++|++++||||+++|++++|
T Consensus 279 ~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 279 APYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred eeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 9999966 89999999999999999999999999999999997
No 8
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-57 Score=424.32 Aligned_cols=338 Identities=23% Similarity=0.355 Sum_probs=270.8
Q ss_pred cCCCCcEEEEEecCC----C-CCCCCCCCCCCCcEEEEEEEEEeCCCcE----EE--------------eCCcc----hh
Q 041217 23 TSSTSWIKGGYWTSR----S-ELPVSQINSGLFTHLTCAFAYLNSSTFT----LY--------------INSTY----EK 75 (383)
Q Consensus 23 ~~~~~~~~~~Y~~~~----~-~~~~~~i~~~~~thii~~~~~~~~~~~~----~~--------------~~~~~----~~ 75 (383)
.....+++++||++| + .|.+.+||..++|||+|+|+.++.++.. +. .-++. ..
T Consensus 33 ~~d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G 112 (441)
T COG3325 33 TSDDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKG 112 (441)
T ss_pred CCCCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccc
Confidence 355678999999993 3 7888999999999999999999998832 11 01111 22
Q ss_pred hHHHHHHHHHhcCCCceEEEEEecCCc--cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC---------Cc
Q 041217 76 SFSSFTNTVKRKNPSVVTLLSIRGGTA--IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK---------ST 144 (383)
Q Consensus 76 ~~~~~~~~lk~~~p~~kvllsigg~~~--~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~---------~~ 144 (383)
.+..+ +.+|+++|++|+++|||||+. .|..++.+.+.|++|+.++++++++|+|||||||||||++ +.
T Consensus 113 ~~~~L-~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~ 191 (441)
T COG3325 113 HFGAL-FDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPK 191 (441)
T ss_pred hHHHH-HHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcc
Confidence 33444 579999999999999999988 8999999999999999999999999999999999999974 57
Q ss_pred chhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCC
Q 041217 145 NMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALY 224 (383)
Q Consensus 145 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~ 224 (383)
++++|+.||++||++|...+..+|+ +|+||+|.|+...... +.+..++.++|||+|+||||+||.| ...++|+||||
T Consensus 192 d~~ny~~Ll~eLR~~LD~a~~edgr-~Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~W-n~~~Gh~a~Ly 268 (441)
T COG3325 192 DKANYVLLLQELRKKLDKAGVEDGR-HYQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAW-NETLGHHAALY 268 (441)
T ss_pred cHHHHHHHHHHHHHHHhhcccccCc-eEEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeeccccc-ccccccccccc
Confidence 8899999999999999998887775 6999999999888776 6788999999999999999999998 55799999999
Q ss_pred C----CC--CC-------CcHHHHHHHHHHcCCCCCcEEEecccceeeeeecCCCCCC----CCCCCc--CCC--CCCCC
Q 041217 225 S----SS--SW-------FNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENA----VGAPAA--GPA--ITMDG 283 (383)
Q Consensus 225 ~----~~--~~-------~~~~~~~~~~~~~gvp~~Kivlglp~yG~~~~~~~~~~~~----~~~~~~--g~~--~~~~g 283 (383)
+ +. +. +.....++.....++||+|||||+|||||.|..+++...+ ...... |.. +...+
T Consensus 269 ~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a~ 348 (441)
T COG3325 269 GTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAG 348 (441)
T ss_pred cCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCccccc
Confidence 3 11 11 2222355666667899999999999999999988764422 222111 111 11112
Q ss_pred cc--cHH---HHHH-HHhhCCCceEEEEcCCceeeEEE--eCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCh
Q 041217 284 SM--GYK---SIKA-FIRDYGYGVASLYNDSYDVNFFS--SGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDDKW 355 (383)
Q Consensus 284 ~~--~y~---ei~~-~~~~~~~~~~~~~D~~~~~~y~~--~~~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~l~~Dd~~ 355 (383)
.. .|. .+.. ....+ ++++.||+...+||++ ..+.+|+|||++|++.|++|+++++|||+|+|.+++|...
T Consensus 349 n~~~~~~~~~~l~~n~~~~~--g~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~n~ 426 (441)
T COG3325 349 NGDKDYGKAYDLDANNAGKN--GYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDENG 426 (441)
T ss_pred ccCccchhhccccccccCCC--CeeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCcch
Confidence 22 222 2222 22223 4999999999999999 5578999999999999999999999999999999999888
Q ss_pred hHHHHHHHhhc
Q 041217 356 ELSLAGMQLLI 366 (383)
Q Consensus 356 ~l~~~~~~~l~ 366 (383)
.+.+++.++|.
T Consensus 427 ~llna~~~~l~ 437 (441)
T COG3325 427 VLLNAVNEGLG 437 (441)
T ss_pred hHHHHhhcccC
Confidence 99999988774
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=4.3e-55 Score=420.37 Aligned_cols=318 Identities=29% Similarity=0.542 Sum_probs=269.1
Q ss_pred cEEEEEecCCCC-----CCCCCCCCCCCcEEEEEEEEEeCCCcEEE-----eC-CcchhhHHHHHHHHHhcCCCceEEEE
Q 041217 28 WIKGGYWTSRSE-----LPVSQINSGLFTHLTCAFAYLNSSTFTLY-----IN-STYEKSFSSFTNTVKRKNPSVVTLLS 96 (383)
Q Consensus 28 ~~~~~Y~~~~~~-----~~~~~i~~~~~thii~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~lk~~~p~~kvlls 96 (383)
++|+|||+++.. +.+++++.+.||||+|+|+.++.++.... .. +.....+..+ +.+|+++|++||+++
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kvlls 79 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNL-KELKAKNPGVKVLLS 79 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHH-HHHHHHHTT-EEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHH-HHHHhhccCceEEEE
Confidence 478999999533 66889999999999999999999885532 22 2234444555 468899999999999
Q ss_pred EecC--Cc-cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCC---cchhhHHHHHHHHHHHHHHHhhccCCc
Q 041217 97 IRGG--TA-IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKS---TNMTNLGILFDEWRAEVTSEARNSGNS 170 (383)
Q Consensus 97 igg~--~~-~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~~~ 170 (383)
|||+ +. .|..++.+++.|++|++++++++++|+|||||||||++... .++.+|..||++||++|++.++.. +
T Consensus 80 igg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~--~ 157 (343)
T PF00704_consen 80 IGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG--K 157 (343)
T ss_dssp EEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH--S
T ss_pred eccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc--c
Confidence 9998 44 79999999999999999999999999999999999999763 599999999999999999865432 2
Q ss_pred ceEEEEEecCCCccccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCC---CCCcHHHHHHHHHHcCCCCC
Q 041217 171 QLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSS---SWFNTNDSIREWLKTGFPAN 247 (383)
Q Consensus 171 ~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~---~~~~~~~~~~~~~~~gvp~~ 247 (383)
+++|++++|+.+.... .++++++.++||||++|+||++++|.. .+++++|+++.. ..++++.+++.|++.|+|++
T Consensus 158 ~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~p~~ 235 (343)
T PF00704_consen 158 GYILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWSD-VTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGVPPS 235 (343)
T ss_dssp TSEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTSS-BETTSSSSSHTTTSGTSSSHHHHHHHHHHTTSTGG
T ss_pred eeEEeecccccccccc-ccccccccccccccccccccCCCCccc-ccccccccccCCccCCCceeeeehhhhccccCChh
Confidence 6899999998766443 358899999999999999999998755 889999998544 46889999999999999999
Q ss_pred cEEEecccceeeeeecCCCCCCCCCCC---cCCCCCCCCcccHHHHHHHHhhCCCceEEEEcCCceeeEEEeC--CEEEE
Q 041217 248 KLVLGLPYHGYAWQLVNPNENAVGAPA---AGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSG--KNWIN 322 (383)
Q Consensus 248 Kivlglp~yG~~~~~~~~~~~~~~~~~---~g~~~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~~~--~~~i~ 322 (383)
||+||+|+||+.|++.++..+...++. .+..+...+.++|.++|..++.++ +...||+..+++|.+.. ++||+
T Consensus 236 Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~y~~~~~~~~~i~ 313 (343)
T PF00704_consen 236 KLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNG--YTVQWDDTAQAPYAYNDDKKHWIS 313 (343)
T ss_dssp GEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTT--EEEEEETTTTEEEEEETTTTEEEE
T ss_pred heeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCC--cceEEeecccceEEEecCCCeEEE
Confidence 999999999999999888776665543 345556788999999999987778 99999999999999966 79999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 041217 323 FDGAEAITAKVSFAKEKGLLGYNAFQLSND 352 (383)
Q Consensus 323 ydd~~S~~~K~~~~~~~glgGv~iW~l~~D 352 (383)
|||++|++.|++|++++||||+++|+|++|
T Consensus 314 ~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 314 YEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp E--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999999999999999999999999999997
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=1.2e-53 Score=405.03 Aligned_cols=289 Identities=18% Similarity=0.240 Sum_probs=239.9
Q ss_pred EEEEEecCC--CCCCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEE--EEEecCCc-c
Q 041217 29 IKGGYWTSR--SELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTL--LSIRGGTA-I 103 (383)
Q Consensus 29 ~~~~Y~~~~--~~~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvl--lsigg~~~-~ 103 (383)
.++|||++| ..+.+.+++.+.||||+|+|+.++++++.+...+..... ...++.+|+++|++||+ +++|||+. .
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~-~~~~~~lk~~~~~lkvlp~i~~gg~~~~~ 82 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDID-KGWIEEVRKANKNIKILPRVLFEGWSYQD 82 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchh-hHHHHHHHhhCCCcEEEeEEEECCCCHHH
Confidence 368999984 467788899999999999999999887655544331111 23445789999999999 77799988 7
Q ss_pred chhhhcCchhHHHHHHHHHHHHHHcCCCeEEEe-ccCCCC---CcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEec
Q 041217 104 FSSMVNQSSNRKSFIESSIETARLYGFQGLDLS-GVLPSK---STNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSH 179 (383)
Q Consensus 104 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD-~e~~~~---~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~ 179 (383)
|+.+++|++.|++|++++++++++||||||||| ||+|.. ++++++|+.||++||++|++. ++.+++++|
T Consensus 83 f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~-------~~~l~~~v~ 155 (318)
T cd02876 83 LQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSA-------NLKLILVIP 155 (318)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhc-------CCEEEEEEc
Confidence 999999999999999999999999999999999 999865 358999999999999999864 357888887
Q ss_pred CCCcc-----ccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcC-CCCCcEEEec
Q 041217 180 HLPAI-----DSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTG-FPANKLVLGL 253 (383)
Q Consensus 180 ~~~~~-----~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~g-vp~~Kivlgl 253 (383)
+.... ....||+++|.+++|+|+||+||+|++ ..++|+||++ +++.+++++++.| +|++||||||
T Consensus 156 ~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~g~~apl~------~v~~~v~~~~~~~~vp~~KlvlGi 226 (318)
T cd02876 156 PPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRPGPNAPLS------WVRSCLELLLPESGKKRAKILLGL 226 (318)
T ss_pred CccccccccccccccCHHHHHhhccEEEEEeeccCCC---CCCCCCCCcH------HHHHHHHHHHhcCCCCHHHeEEec
Confidence 64432 222489999999999999999999975 6799999997 8999999999987 9999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCcCCCCCCCCcccHHHHHHHHhhCCCceEEEEcCCceee-EEEeC---CEEEEeCCHHHH
Q 041217 254 PYHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVN-FFSSG---KNWINFDGAEAI 329 (383)
Q Consensus 254 p~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~-y~~~~---~~~i~ydd~~S~ 329 (383)
|+||+.|++.+ .+ +.+++.+.+++++..+ ++..||+++..+ |.+.+ ++||+|||++|+
T Consensus 227 p~YG~~w~~~~-----~~-----------~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~~~~~v~ydd~~Si 288 (318)
T cd02876 227 NFYGNDYTLPG-----GG-----------GAITGSEYLKLLKSNK--PKLQWDEKSAEHFFEYKNKGGKHAVFYPTLKSI 288 (318)
T ss_pred cccccccccCC-----CC-----------ceeehHHHHHHHHhcC--CCceeccCCCcceEEEecCCCcEEEEeCCHHHH
Confidence 99999997543 11 1234445556666666 889999996554 66643 799999999999
Q ss_pred HHHHHHHHHcCCcEEEEEecCCCC
Q 041217 330 TAKVSFAKEKGLLGYNAFQLSNDD 353 (383)
Q Consensus 330 ~~K~~~~~~~glgGv~iW~l~~Dd 353 (383)
+.|+++++++|+ |+++|+|++++
T Consensus 289 ~~K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 289 QLRLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred HHHHHHHHHcCC-cEEEEcccCCc
Confidence 999999999999 99999999987
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=2.1e-52 Score=400.52 Aligned_cols=298 Identities=18% Similarity=0.236 Sum_probs=240.1
Q ss_pred CCcEEEEEecCCCCCCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCccch
Q 041217 26 TSWIKGGYWTSRSELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFS 105 (383)
Q Consensus 26 ~~~~~~~Y~~~~~~~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~ 105 (383)
..+.|+||.... ..-...++..+|||..+ + + .+ .+++...| .+++||+++ ++.. .
T Consensus 34 ~~~~~~~~~~~~--~~~~~~~~~~~tti~~~-------~-~-----~~----~~~~~~A~--~~~v~v~~~-~~~~---~ 88 (358)
T cd02875 34 PRFEFLVFSVNS--TNYPNYDWSKVTTIAIF-------G-D-----ID----DELLCYAH--SKGVRLVLK-GDVP---L 88 (358)
T ss_pred CceEEEEEEeCC--CcCcccccccceEEEec-------C-C-----CC----HHHHHHHH--HcCCEEEEE-CccC---H
Confidence 346789998664 44578888999999986 1 1 11 24554344 448999987 3221 2
Q ss_pred hhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC--CcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCc
Q 041217 106 SMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK--STNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPA 183 (383)
Q Consensus 106 ~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~ 183 (383)
..+.|++.|++|++++++++++|||||||||||+|.. +.++++|+.||++||++|++.+ ++++||+++++.+.
T Consensus 89 ~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~-----~~~~Lsvav~~~p~ 163 (358)
T cd02875 89 EQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKEN-----PGYQISFDVAWSPS 163 (358)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcC-----CCcEEEEEEecCcc
Confidence 3577999999999999999999999999999999974 4789999999999999999753 36899999987665
Q ss_pred cccCC-CChhhhhccccEEEeeeccCCCC-CC-CCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcEEEecccceeee
Q 041217 184 IDSVT-YPIDSMLRNLDWVHVRAYDYYLP-SR-DNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAW 260 (383)
Q Consensus 184 ~~~~~-~~~~~l~~~vD~v~lm~yd~~~~-~~-~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Kivlglp~yG~~~ 260 (383)
....+ ||+++|.++||||+||+||+|++ |. ...++++||+. +++.+++.|++.|+|++|||||+|+||+.|
T Consensus 164 ~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~------~v~~~v~~~~~~gvp~~KLvLGip~YGr~w 237 (358)
T cd02875 164 CIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS------QTLSGYNNFTKLGIDPKKLVMGLPWYGYDY 237 (358)
T ss_pred cccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch------hHHHHHHHHHHcCCCHHHeEEEeCCCCCce
Confidence 44434 99999999999999999999975 54 34688999986 899999999999999999999999999999
Q ss_pred eecCCCC-----CCCCCCCcCCCCC--CCCcccHHHHHHHHhhCCCceEEEEcCCceeeEEE-e---C-CEEEEeCCHHH
Q 041217 261 QLVNPNE-----NAVGAPAAGPAIT--MDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFS-S---G-KNWINFDGAEA 328 (383)
Q Consensus 261 ~~~~~~~-----~~~~~~~~g~~~~--~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~-~---~-~~~i~ydd~~S 328 (383)
++.+++. ..++.|..|.+.. ..+.++|.|+|+.+++.+ ++..||+.+++||++ . + .+||||||++|
T Consensus 238 ~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~--~~~~wD~~~~~py~~y~d~~g~~~~V~ydD~~S 315 (358)
T cd02875 238 PCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSI--GGRLWDSEQKSPFYNYKDKQGNLHQVWYDNPQS 315 (358)
T ss_pred eCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCC--CceeeccccccceEEEecCCCcEEEEEeCCHHH
Confidence 9766542 2234444443321 235689999999887766 789999999999984 2 2 27999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCCChhHHHHH
Q 041217 329 ITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAG 361 (383)
Q Consensus 329 ~~~K~~~~~~~glgGv~iW~l~~Dd~~~l~~~~ 361 (383)
++.|++|++++||||+++|+||+||+++.+.|.
T Consensus 316 i~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~~~ 348 (358)
T cd02875 316 LSIKVAYAKNLGLKGIGMWNGDLLDYSGLPIAE 348 (358)
T ss_pred HHHHHHHHHhCCCCeEEEEeccccccCCCchhh
Confidence 999999999999999999999999999988654
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=3.7e-49 Score=374.02 Aligned_cols=287 Identities=20% Similarity=0.304 Sum_probs=237.2
Q ss_pred EEEEEecCCCC--CCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCC---c-
Q 041217 29 IKGGYWTSRSE--LPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGT---A- 102 (383)
Q Consensus 29 ~~~~Y~~~~~~--~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~---~- 102 (383)
.++||++++.. +....-....+|||++.++.++++| .+... ....+++.+|++ ++|++++|||+. .
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g-~~~~~-----~~~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADG-TLTGL-----PDERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCC-CCCCC-----CCHHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 47899988444 3444556678999999999999987 43221 124566555655 899999999985 2
Q ss_pred --cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecC
Q 041217 103 --IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHH 180 (383)
Q Consensus 103 --~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~ 180 (383)
.++.+++|++.|++|++++++++++|+|||||||||++.. +++++|+.||++||++|++. ++.|++++++
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~fl~~lr~~l~~~-------~~~lsv~~~p 146 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQFLRELSDRLHPA-------GYTLSTAVVP 146 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHHHHHHHHHhhhc-------CcEEEEEecC
Confidence 6789999999999999999999999999999999999865 78999999999999999853 4688888765
Q ss_pred CCcc-----ccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcEEEeccc
Q 041217 181 LPAI-----DSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLPY 255 (383)
Q Consensus 181 ~~~~-----~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Kivlglp~ 255 (383)
.... +...|+++++.+++|+|++|+||+|++| ..++|+||+. .++..++++. .|+|++||+||||+
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~--~~~gp~a~~~------~~~~~~~~~~-~gvp~~KlvlGip~ 217 (313)
T cd02874 147 KTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG--GPPGPVAPIG------WVERVLQYAV-TQIPREKILLGIPL 217 (313)
T ss_pred ccccccccccccccCHHHHHhhCCEEEEEEeccCCCC--CCCCccCChH------HHHHHHHHHH-hcCCHHHEEEeecc
Confidence 4321 2245899999999999999999999875 5688999986 6777877666 69999999999999
Q ss_pred ceeeeeecCCCCCCCCCCCcCCCCCCCCcccHHHHHHHHhhCCCceEEEEcCCceeeEEE--e---CCEEEEeCCHHHHH
Q 041217 256 HGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFS--S---GKNWINFDGAEAIT 330 (383)
Q Consensus 256 yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~--~---~~~~i~ydd~~S~~ 330 (383)
||+.|++.++.. ...+.++|.++++++...+ ++..||+.++++|.. . ..+||+|||++|++
T Consensus 218 YG~~w~~~~~~~------------~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~ 283 (313)
T cd02874 218 YGYDWTLPYKKG------------GKASTISPQQAINLAKRYG--AEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQ 283 (313)
T ss_pred cccccccCCCCC------------cCccccCHHHHHHHHHHcC--CCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHHH
Confidence 999998654210 1235688999999998888 999999999999874 2 25899999999999
Q ss_pred HHHHHHHHcCCcEEEEEecCCCCC
Q 041217 331 AKVSFAKEKGLLGYNAFQLSNDDK 354 (383)
Q Consensus 331 ~K~~~~~~~glgGv~iW~l~~Dd~ 354 (383)
.|+++++++||||+++|+|++||.
T Consensus 284 ~K~~~~~~~~lgGv~iW~lg~dD~ 307 (313)
T cd02874 284 AKFELAKEYGLRGVSYWRLGLEDP 307 (313)
T ss_pred HHHHHHHHcCCCeEEEEECCCCCc
Confidence 999999999999999999999994
No 13
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1.6e-45 Score=338.44 Aligned_cols=245 Identities=27% Similarity=0.433 Sum_probs=207.3
Q ss_pred EEEEecCCCCCC--CCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCc-cchh
Q 041217 30 KGGYWTSRSELP--VSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA-IFSS 106 (383)
Q Consensus 30 ~~~Y~~~~~~~~--~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~-~~~~ 106 (383)
|+|||++|+... +++++..+||||+++|+.++++| ++...+. ...+..+++.+|+ +++||+++|||+.. .+..
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~~-~~~~~~~~~~~~~--~~~kvl~sigg~~~~~~~~ 76 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANPV-RSELNSVVNAAHA--HNVKILISLAGGSPPEFTA 76 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecCc-HHHHHHHHHHHHh--CCCEEEEEEcCCCCCcchh
Confidence 589999977655 89999999999999999999987 7766543 2345566655554 48999999999876 5777
Q ss_pred hhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCcccc
Q 041217 107 MVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDS 186 (383)
Q Consensus 107 ~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~ 186 (383)
++.+++.|++|++++++++++|+|||||||||+|... +++|..|+++||+++++. ++.|++++++....
T Consensus 77 ~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~~-------~~~lt~av~~~~~~-- 145 (253)
T cd06545 77 ALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKKE-------GKLLTAAVSSWNGG-- 145 (253)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhhc-------CcEEEEEccCcccc--
Confidence 8999999999999999999999999999999999763 789999999999999864 46889888754321
Q ss_pred CCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCC-CCCcEEEecccceeeeeecCC
Q 041217 187 VTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGF-PANKLVLGLPYHGYAWQLVNP 265 (383)
Q Consensus 187 ~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gv-p~~Kivlglp~yG~~~~~~~~ 265 (383)
.+ ..++.+++|+|+||+||++++|....+++++|+. ++++.+++|+..|+ |++||+||+|+||+.|
T Consensus 146 -~~-~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~------~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w----- 212 (253)
T cd06545 146 -AV-SDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD------DAVNDLNYWNERGLASKDKLVLGLPFYGYGF----- 212 (253)
T ss_pred -cc-cHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH------hHHHHHHHHHHcCCCCHHHEEEEeCCccccc-----
Confidence 13 3578899999999999999998777789999986 78899999999998 9999999999999877
Q ss_pred CCCCCCCCCcCCCCCCCCcccHHHHHHHHhhCCCceEEEEcCCceeeEEEeCCEEEEeCCHHHHHHHHHHHHHcCCcEEE
Q 041217 266 NENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYN 345 (383)
Q Consensus 266 ~~~~~~~~~~g~~~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~glgGv~ 345 (383)
+|+++.+++.|+++++++ +||+|
T Consensus 213 --------------------------------------------------------~~~~~~~~~~~~~~~~~~-~gG~~ 235 (253)
T cd06545 213 --------------------------------------------------------YYNGIPTIRNKVAFAKQN-YGGVM 235 (253)
T ss_pred --------------------------------------------------------cCCCHHHHHHHHHHHHHh-cCeEE
Confidence 366678999999999999 99999
Q ss_pred EEecCCCC--ChhHHH
Q 041217 346 AFQLSNDD--KWELSL 359 (383)
Q Consensus 346 iW~l~~Dd--~~~l~~ 359 (383)
+|++++|. ..+|.+
T Consensus 236 ~w~~~~d~~~~~~l~~ 251 (253)
T cd06545 236 IWELSQDASGENSLLN 251 (253)
T ss_pred EEeccCCCCCCcchhh
Confidence 99999997 345544
No 14
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=3.9e-45 Score=343.09 Aligned_cols=285 Identities=14% Similarity=0.163 Sum_probs=222.9
Q ss_pred EEEEecCCCCCC--CCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCc---cc
Q 041217 30 KGGYWTSRSELP--VSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA---IF 104 (383)
Q Consensus 30 ~~~Y~~~~~~~~--~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~---~~ 104 (383)
++||+.++..-. -.......+|||++.++.+...++.+..... .....+++.+|++.|-++++..++|+.. .|
T Consensus 2 ~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~d--~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~ 79 (298)
T cd06549 2 ALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFVD--PQGVAIIAAAKAHPKVLPLVQNISGGAWDGKNI 79 (298)
T ss_pred eeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccCC--hHHHHHHHHHHcCCceeEEEEecCCCCCCHHHH
Confidence 578888743333 3334456799999999999855557754322 2223345567888888899989887544 68
Q ss_pred hhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCcc
Q 041217 105 SSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAI 184 (383)
Q Consensus 105 ~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~ 184 (383)
+.+++|++.|++|++++++++++|+|||||||||++.. +++++|+.||++||++|++. ++.|++++|+.+.
T Consensus 80 ~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~-~d~~~~~~fl~eL~~~l~~~-------~~~lsv~v~~~~~- 150 (298)
T cd06549 80 ARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPA-DDLPKYVAFLSELRRRLPAQ-------GKQLTVTVPADEA- 150 (298)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCh-hHHHHHHHHHHHHHHHhhhc-------CcEEEEEecCCCC-
Confidence 99999999999999999999999999999999998854 89999999999999999864 4689999986543
Q ss_pred ccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcEEEecccceeeeeecC
Q 041217 185 DSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVN 264 (383)
Q Consensus 185 ~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Kivlglp~yG~~~~~~~ 264 (383)
.||++++.+++|+++||+||+|+++ ..++|.+|.. +++..++... .++|++||+||||+||+.|++..
T Consensus 151 ---~~d~~~l~~~~D~v~lMtYD~~~~~--~~~gp~a~~~------~~~~~~~~~~-~~vp~~KlvlGip~YG~~w~~~~ 218 (298)
T cd06549 151 ---DWNLKALARNADKLILMAYDEHYQG--GAPGPIASQD------WFESNLAQAV-KKLPPEKLIVALGSYGYDWTKGG 218 (298)
T ss_pred ---CCCHHHHHHhCCEEEEEEeccCCCC--CCCCCCCChh------hHHHHHHHHH-hCCCHHHEEEEecccCccccCCC
Confidence 4799999999999999999999764 3456666653 5666776654 59999999999999999997532
Q ss_pred CCCCCCCCCCcCCCCCCCCcccHHHHHHHHhhCCCceEEEEcCCceee-EEE-e---CCEEEEeCCHHHHHHHHHHHHHc
Q 041217 265 PNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVN-FFS-S---GKNWINFDGAEAITAKVSFAKEK 339 (383)
Q Consensus 265 ~~~~~~~~~~~g~~~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~-y~~-~---~~~~i~ydd~~S~~~K~~~~~~~ 339 (383)
+. ..++..+...++...+ ....||++...+ |.+ + ..++|||+|++|+..|+++++++
T Consensus 219 ~~----------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~~~ 280 (298)
T cd06549 219 NT----------------KAISSEAAWLLAAHAS--AAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQRL 280 (298)
T ss_pred CC----------------cccCHHHHHHHHHHcC--CcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHHHc
Confidence 11 1234455555555566 678898876655 444 2 24899999999999999999999
Q ss_pred CCcEEEEEecCCCCCh
Q 041217 340 GLLGYNAFQLSNDDKW 355 (383)
Q Consensus 340 glgGv~iW~l~~Dd~~ 355 (383)
||+|+++|+|++||+.
T Consensus 281 ~l~Gva~W~lg~ed~~ 296 (298)
T cd06549 281 GPAGVALWRLGSEDPG 296 (298)
T ss_pred CCCcEEEEeccCCCCC
Confidence 9999999999999853
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=1.7e-35 Score=264.77 Aligned_cols=171 Identities=23% Similarity=0.312 Sum_probs=139.3
Q ss_pred EEEEecCCCCCC---CCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCc-cch
Q 041217 30 KGGYWTSRSELP---VSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA-IFS 105 (383)
Q Consensus 30 ~~~Y~~~~~~~~---~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~-~~~ 105 (383)
++|||+.+.... +..++.+.||||+|+|+.+++++......+.........++.+++++|++||+++|||+.. ...
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~ 80 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTDSSPF 80 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCc
Confidence 489999955444 4789999999999999999998744321222223333444568888899999999999877 222
Q ss_pred hhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCc--chhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCc
Q 041217 106 SMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKST--NMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPA 183 (383)
Q Consensus 106 ~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~--~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~ 183 (383)
.++.+++.|++|++++++++++|+|||||||||+|.... ++++|+.|+++||++|++. ++.||+++|+.+.
T Consensus 81 ~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~-------~~~ls~a~~~~~~ 153 (210)
T cd00598 81 TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAA-------NYLLTIAVPASYF 153 (210)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhccc-------CcEEEEEecCChH
Confidence 788999999999999999999999999999999998743 5899999999999999753 5899999998776
Q ss_pred cccCCCChhhhhccccEEEeeecc
Q 041217 184 IDSVTYPIDSMLRNLDWVHVRAYD 207 (383)
Q Consensus 184 ~~~~~~~~~~l~~~vD~v~lm~yd 207 (383)
.....|++.++.+++|++++|+||
T Consensus 154 ~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 154 DLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred HhhccCCHHHHHhhCCEEEEeeec
Confidence 544348999999999999999997
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=2e-33 Score=261.55 Aligned_cols=236 Identities=19% Similarity=0.279 Sum_probs=194.8
Q ss_pred CceEEEEEecCC--c-c-----chhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHH
Q 041217 90 SVVTLLSIRGGT--A-I-----FSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVT 161 (383)
Q Consensus 90 ~~kvllsigg~~--~-~-----~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~ 161 (383)
+++.++.+...+ . . .+.++.|+..++++++++++.++++|+.|+.||+|.... .|++.|..|++++|.+|+
T Consensus 160 ~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~-~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 160 KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGP-GDRELYTDFLRQVRDALH 238 (423)
T ss_pred ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCH-HHHHHHHHHHHHHHHHhc
Confidence 567777775544 2 3 588999999999999999999999999999999998765 999999999999999998
Q ss_pred HHhhccCCcceEEEEEecCCCc-----cccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 041217 162 SEARNSGNSQLLLVMKSHHLPA-----IDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSI 236 (383)
Q Consensus 162 ~~~~~~~~~~~~ls~a~~~~~~-----~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~ 236 (383)
+. ++.+++|+++... .|...||+..+.+.+|||.+|+||.|..| +.+|+.||.- +++..+
T Consensus 239 ~~-------G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g--G~PG~vA~i~------~vr~~i 303 (423)
T COG3858 239 SG-------GYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG--GPPGPVASIG------WVRKVI 303 (423)
T ss_pred cC-------CeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC--CCCCcccCch------hHhhhh
Confidence 64 5899999997542 34445999999999999999999999875 6789999886 788888
Q ss_pred HHHHHcCCCCCcEEEecccceeeeeecCCCCCCCCCCCcCCCCCCCCcccHHHHHHHHhhCCCceEEEEcCCceeeEEE-
Q 041217 237 REWLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFS- 315 (383)
Q Consensus 237 ~~~~~~gvp~~Kivlglp~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~- 315 (383)
++.+. .+|++||+||+|+||++|.+..... |..+ .. +++++-.++....+ .++.||..+++||++
T Consensus 304 eya~T-~iP~~Kv~mGip~YGYDW~~~y~~~---g~~~-------~a-~~~~~~i~ia~~y~--A~Iq~D~~~qsp~F~y 369 (423)
T COG3858 304 EYALT-VIPAEKVMMGIPLYGYDWTLPYDPL---GYLA-------RA-ISPDEAIDIANRYN--ATIQYDATSQSPFFYY 369 (423)
T ss_pred hhhhe-ecchHHeEEccccccccccCCCCCC---ccee-------ee-cCcchhhhhhcccC--CccCcCccccCceEEE
Confidence 87776 8999999999999999997644221 1110 11 44444333343444 889999999999997
Q ss_pred ---eC-CEEEEeCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCh
Q 041217 316 ---SG-KNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDDKW 355 (383)
Q Consensus 316 ---~~-~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~l~~Dd~~ 355 (383)
.+ .|+|||||.+|+..|.+++|++||.||+.|.|+++|+.
T Consensus 370 ~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~ 413 (423)
T COG3858 370 VDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPR 413 (423)
T ss_pred EcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchh
Confidence 34 68999999999999999999999999999999999955
No 17
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=3.1e-31 Score=242.69 Aligned_cols=197 Identities=15% Similarity=0.250 Sum_probs=144.7
Q ss_pred EEEEEecCCC--------CCCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcch--hhHHHHHHHHH-hcCCCceEEEEE
Q 041217 29 IKGGYWTSRS--------ELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYE--KSFSSFTNTVK-RKNPSVVTLLSI 97 (383)
Q Consensus 29 ~~~~Y~~~~~--------~~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lk-~~~p~~kvllsi 97 (383)
+++|||+.++ .+++..++..+||||+|+|+.++.+| ++.+.+... ..+..+.+.++ .+++++||++||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSi 79 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTELAILQSSGVKVMGML 79 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHHHHHHhCCCEEEEEE
Confidence 4789998831 12233456789999999999999976 787766421 11222222222 145799999999
Q ss_pred ecCCc-cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEE
Q 041217 98 RGGTA-IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVM 176 (383)
Q Consensus 98 gg~~~-~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~ 176 (383)
|||+. .|+.++++++.|++|++++++++++|+|||||||||+|.. ..+|..|+++||+++. +++.||+
T Consensus 80 GG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~---~~~~~~ll~~Lr~~~~--------~~~~lT~ 148 (256)
T cd06546 80 GGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS---LDGIIRLIDRLRSDFG--------PDFIITL 148 (256)
T ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC---HhHHHHHHHHHHHHhC--------CCcEEEE
Confidence 99975 7888888899999999999999999999999999999853 4689999999999984 2578988
Q ss_pred EecCCCc----cccCCCChhhhhc----cccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCc
Q 041217 177 KSHHLPA----IDSVTYPIDSMLR----NLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANK 248 (383)
Q Consensus 177 a~~~~~~----~~~~~~~~~~l~~----~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~K 248 (383)
++++... ....++++.++.+ ++||+|+|.||.++.-. .. .....|+..++|++|
T Consensus 149 Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~-----------------~~-~~~~~~~~~~~~~~K 210 (256)
T cd06546 149 APVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS-----------------SP-SDYDAIVAQGWDPER 210 (256)
T ss_pred CCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc-----------------CH-HHHHHHHHcCCCccc
Confidence 7764321 1112367777654 89999999999754310 01 223456667999999
Q ss_pred EEEeccc
Q 041217 249 LVLGLPY 255 (383)
Q Consensus 249 ivlglp~ 255 (383)
|++|+|.
T Consensus 211 v~iGlpa 217 (256)
T cd06546 211 IVIGLLT 217 (256)
T ss_pred EEEEEec
Confidence 9999985
No 18
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.98 E-value=3.4e-31 Score=240.94 Aligned_cols=200 Identities=12% Similarity=0.114 Sum_probs=142.4
Q ss_pred CCCCCCCCCCCCC--CcEEEEEEEE-EeC----CCcEEEeCCcc-hhhHHHHHHHHHhcCCCceEEEEEecCCccchhhh
Q 041217 37 RSELPVSQINSGL--FTHLTCAFAY-LNS----STFTLYINSTY-EKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMV 108 (383)
Q Consensus 37 ~~~~~~~~i~~~~--~thii~~~~~-~~~----~~~~~~~~~~~-~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~ 108 (383)
....++++||... ||||+|+|+. .+. .++.....+.. ...+..+. .+|+++|++||++|||||+...+.+.
T Consensus 10 ~~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lK~~~p~lKvllSiGG~~~~~~~~~ 88 (253)
T cd06544 10 FNGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVK-SIKAQHPNVKVVISIGGRGVQNNPTP 88 (253)
T ss_pred CCCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHH-HHHHhCCCcEEEEEeCCCCCCCCccc
Confidence 3456789999988 9999999993 332 12343333222 23445565 79999999999999999987323333
Q ss_pred cCch----hHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCcc
Q 041217 109 NQSS----NRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAI 184 (383)
Q Consensus 109 ~~~~----~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~ 184 (383)
.++. .|++|++++++++++|||||||||||+|. .++++|+.|+++||++|++. ++++.+++.+....
T Consensus 89 ~~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~-------~~lt~a~vap~~~~ 159 (253)
T cd06544 89 FDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNN-------GVIKVASIAPSEDA 159 (253)
T ss_pred cCchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhc-------CCeEEEEecCCccc
Confidence 3344 44566899999999999999999999984 57899999999999999863 23333333332222
Q ss_pred ccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcEEEecccceeee
Q 041217 185 DSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAW 260 (383)
Q Consensus 185 ~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Kivlglp~yG~~~ 260 (383)
. ..+.+..+.+++|++++|+|++++.+.+ ...+ ...+..+.|.. ++|++||++|+|.++..|
T Consensus 160 ~-~~~y~~~~~~~~d~id~~~~qfy~~~~~---~~~~---------~~~~~~~~~~~-~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 160 E-QSHYLALYNAYGDYIDYVNYQFYNYGVP---TTVA---------KYVEFYDEVAN-NYPGKKVLASFSTDGEDG 221 (253)
T ss_pred c-ccccHHHHHHhhCceeEEEhhhhCCCCC---CCHH---------HHHHHHHHHHh-CCCcccEEEEEecCCCcc
Confidence 1 2344788899999999999999876321 1111 22345566664 799999999999999766
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.97 E-value=5e-29 Score=235.38 Aligned_cols=210 Identities=23% Similarity=0.343 Sum_probs=144.1
Q ss_pred cEEEEEecCCCCC------CCCCCCCCCCcEEEEEEEEEeCCCc-EEEeC------CcchhhHHHHHHHHHhcCCCceEE
Q 041217 28 WIKGGYWTSRSEL------PVSQINSGLFTHLTCAFAYLNSSTF-TLYIN------STYEKSFSSFTNTVKRKNPSVVTL 94 (383)
Q Consensus 28 ~~~~~Y~~~~~~~------~~~~i~~~~~thii~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~lk~~~p~~kvl 94 (383)
++++|||+++... +++.+ .+.||||+++|+.++.++. .+.+. ......+.+.++.+|++ ++||+
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~-~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVl 77 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDV-PSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVL 77 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccC-CCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEE
Confidence 4689999984333 23444 3789999999999987652 22211 11233445555566665 89999
Q ss_pred EEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCC----cchhhHHHHHHHHHHHHHHHhhccCCc
Q 041217 95 LSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKS----TNMTNLGILFDEWRAEVTSEARNSGNS 170 (383)
Q Consensus 95 lsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~----~~~~~~~~ll~~l~~~l~~~~~~~~~~ 170 (383)
+||||+.... .+.+++.|++|++++++++++|+|||||||||+|... .++.+|..+||+||+++..
T Consensus 78 lSiGG~~~~~--~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~-------- 147 (312)
T cd02871 78 ISIGGANGHV--DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP-------- 147 (312)
T ss_pred EEEeCCCCcc--ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC--------
Confidence 9999987633 3678899999999999999999999999999998653 4678999999999998852
Q ss_pred ceEEEEEecCCCcc--------ccCCC--ChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 041217 171 QLLLVMKSHHLPAI--------DSVTY--PIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWL 240 (383)
Q Consensus 171 ~~~ls~a~~~~~~~--------~~~~~--~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~ 240 (383)
++.||+++.++... ....| .+.++.+++|++++|.||.++.+. +....+ .........++..++
T Consensus 148 ~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~ 221 (312)
T cd02871 148 NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGG-----CDGQSY-SQGTADFLVALADML 221 (312)
T ss_pred CeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccc-----ccccCC-ccchhHHHHHHHHHH
Confidence 68999986543221 01123 367788899999999999875421 000000 001112223333333
Q ss_pred HcC-----------CCCCcEEEecccc
Q 041217 241 KTG-----------FPANKLVLGLPYH 256 (383)
Q Consensus 241 ~~g-----------vp~~Kivlglp~y 256 (383)
..+ +|++||++|+|..
T Consensus 222 ~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 222 LTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HcCCCccCCcccccCChhhEEEeccCC
Confidence 344 8999999999974
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.4e-29 Score=222.33 Aligned_cols=288 Identities=13% Similarity=0.198 Sum_probs=226.9
Q ss_pred cEEEEEecC--CCCCCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEEEEE--ecCCc-
Q 041217 28 WIKGGYWTS--RSELPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSI--RGGTA- 102 (383)
Q Consensus 28 ~~~~~Y~~~--~~~~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsi--gg~~~- 102 (383)
.-+.||.++ +.+|+++.+..+.+|||...|+.+...|..+.+.-. ...-+.+++.+|+++++++++.-+ ..+..
T Consensus 79 ~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~-hdid~gwiralRk~~~~l~ivPR~~fd~~~~~ 157 (392)
T KOG2091|consen 79 GTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGK-HDIDPGWIRALRKSGKDLHIVPRFYFDEFTSA 157 (392)
T ss_pred CceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeec-ccCChHHHHHHHHhCCCceeeceehhhhccch
Confidence 355899999 789999999999999999999999887744443332 222345667899999999988544 55666
Q ss_pred cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEe-ccC-CCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecC
Q 041217 103 IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLS-GVL-PSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHH 180 (383)
Q Consensus 103 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD-~e~-~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~ 180 (383)
.+..++.+++.|++..+.++++|++++|||+.++ |.. .+...+ .....+++.|-++++++ .+++-.++|+
T Consensus 158 d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d-~~al~~v~hl~k~Lhkq-------~l~~iLvvPp 229 (392)
T KOG2091|consen 158 DLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIAD-KDALELVEHLGKALHKQ-------ELQAILVVPP 229 (392)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHh-------heEEEEEeCC
Confidence 8999999999999999999999999999999998 432 222122 34456777777788753 4677777776
Q ss_pred CCcc--ccC----CCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcEEEecc
Q 041217 181 LPAI--DSV----TYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLP 254 (383)
Q Consensus 181 ~~~~--~~~----~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Kivlglp 254 (383)
.... .+. .-+++.+.+.+|.+.+||||+.++ ..|+++||+. +++.+++......--+.||++|+.
T Consensus 230 ~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~---~~pg~nap~~------wi~~~l~~l~~~s~~r~KiLlGlN 300 (392)
T KOG2091|consen 230 VIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV---QGPGPNAPLE------WIRHCLHHLGGSSAKRPKILLGLN 300 (392)
T ss_pred CCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc---cCCCCCCCHH------HHHHHHHHhCCccccccceeEeee
Confidence 3221 111 135789999999999999999764 5789999997 888888776654455689999999
Q ss_pred cceeeeeecCCCCCCCCCCCcCCCCCCCCcccHHHHHHHHhhCCCceEEEEcCCceeeEEE-----eCCEEEEeCCHHHH
Q 041217 255 YHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRDYGYGVASLYNDSYDVNFFS-----SGKNWINFDGAEAI 329 (383)
Q Consensus 255 ~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~-----~~~~~i~ydd~~S~ 329 (383)
|||..|...+. .+.++-....+.++... ....||+++.++++- ++++.|.|++..|+
T Consensus 301 FYG~d~~~gdg----------------~~~IT~~rYL~lLk~~k--~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl 362 (392)
T KOG2091|consen 301 FYGNDFNLGDG----------------GEAITAKRYLQLLKGEK--SVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSL 362 (392)
T ss_pred ccccccccCCC----------------CCceeHHHHHHHHhccC--cceeeccccchhheeeeccCCCceEEEecchHhH
Confidence 99999964220 24578888889998888 889999999998885 45899999999999
Q ss_pred HHHHHHHHHcCCcEEEEEecCCC
Q 041217 330 TAKVSFAKEKGLLGYNAFQLSND 352 (383)
Q Consensus 330 ~~K~~~~~~~glgGv~iW~l~~D 352 (383)
..+++.+++.|. ||+||++||-
T Consensus 363 ~~Ri~lA~~~gv-gISIWe~GqG 384 (392)
T KOG2091|consen 363 ELRIELARELGV-GISIWEYGQG 384 (392)
T ss_pred HHHHHHHHHhCC-ceEeeeccCc
Confidence 999999999999 9999999985
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.91 E-value=2.5e-23 Score=191.68 Aligned_cols=193 Identities=16% Similarity=0.183 Sum_probs=137.6
Q ss_pred cEEEEEecCCCC------CCCCCCCCCCCcEEEEEEEEEeCCCcEEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCC
Q 041217 28 WIKGGYWTSRSE------LPVSQINSGLFTHLTCAFAYLNSSTFTLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGT 101 (383)
Q Consensus 28 ~~~~~Y~~~~~~------~~~~~i~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~ 101 (383)
++.+|||+.+.. ..+.++|. .++.|++....++.++... .........+.++.+|++ |+||+++|||+.
T Consensus 1 ~~~~~y~~~~~~~~~~~~~~l~~~pd-s~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l~~k--G~KVl~sigg~~ 75 (255)
T cd06542 1 PISFGYFEVWDDKGASLQESLLNLPD-SVDMVSLFAANINLDAATA--VQFLLTNKETYIRPLQAK--GTKVLLSILGNH 75 (255)
T ss_pred CeEEEEEEecCCcCcccccccccCCC-cceEEEEcccccCcccccc--hhhhhHHHHHHHHHHhhC--CCEEEEEECCCC
Confidence 357899999765 56667774 4888888544333322000 001123344555556555 999999999987
Q ss_pred c--cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC------CcchhhHHHHHHHHHHHHHHHhhccCCcceE
Q 041217 102 A--IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK------STNMTNLGILFDEWRAEVTSEARNSGNSQLL 173 (383)
Q Consensus 102 ~--~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~------~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ 173 (383)
. .+ ....+++.|++|++++++++++|||||||||||++.. +.+.++|..|+++||+.++. ++++
T Consensus 76 ~~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~-------~~kl 147 (255)
T cd06542 76 LGAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGP-------TDKL 147 (255)
T ss_pred CCCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCc-------CCcE
Confidence 6 34 2456778899999999999999999999999998864 24778999999999999963 2578
Q ss_pred EEEEecCCCccccCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcEEEec
Q 041217 174 LVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGL 253 (383)
Q Consensus 174 ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Kivlgl 253 (383)
|+++.++..... +.+++.+++||+++|+|+.++.... + . ......|+|++|+++|+
T Consensus 148 lt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~~~~--~-----~-------------~~~~~~g~~~~k~i~~~ 203 (255)
T cd06542 148 LTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSSSTQ--R-----N-------------WNTNSPKIPPEKMVYTE 203 (255)
T ss_pred EEEEecCCchhc----CHHHHHHhCCEEEeeccCCCCccCC--c-----c-------------cccccCCCCHHHceeee
Confidence 999887644321 6789999999999999986543110 0 0 01123589999999999
Q ss_pred ccce
Q 041217 254 PYHG 257 (383)
Q Consensus 254 p~yG 257 (383)
++++
T Consensus 204 ~~~~ 207 (255)
T cd06542 204 SFEE 207 (255)
T ss_pred eeec
Confidence 9976
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.89 E-value=8.4e-22 Score=181.85 Aligned_cols=200 Identities=20% Similarity=0.191 Sum_probs=131.6
Q ss_pred EEEEecCCC--CCCCCCCCCCCCcEEEEEEEEEeCCCcE--EEeCCc--ch-----hhHHHHHHHHHhcCCCceEEEEEe
Q 041217 30 KGGYWTSRS--ELPVSQINSGLFTHLTCAFAYLNSSTFT--LYINST--YE-----KSFSSFTNTVKRKNPSVVTLLSIR 98 (383)
Q Consensus 30 ~~~Y~~~~~--~~~~~~i~~~~~thii~~~~~~~~~~~~--~~~~~~--~~-----~~~~~~~~~lk~~~p~~kvllsig 98 (383)
++.||-... .-.-+..+...++-|+.+|+..-+.++. +.+.+- .. ..+.+-++.++ .+++|||+|||
T Consensus 3 v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq--~~G~KVlLSIG 80 (280)
T cd02877 3 IAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQ--SKGKKVLLSIG 80 (280)
T ss_pred eEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHH--HCCCEEEEEcc
Confidence 678886622 2222233445689999999987765322 222211 11 13333344444 45999999999
Q ss_pred cCCccchhhhcCchhHHHHHHHHHHHH------------HHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhc
Q 041217 99 GGTAIFSSMVNQSSNRKSFIESSIETA------------RLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARN 166 (383)
Q Consensus 99 g~~~~~~~~~~~~~~r~~f~~~i~~~l------------~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 166 (383)
|++..+.. .+++.|++|++++.++. .+++|||||||||+|.. .+|..|+++||+.+.+..
T Consensus 81 G~~~~~~~--~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~~~~-- 152 (280)
T cd02877 81 GAGGSYSL--SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFASDP-- 152 (280)
T ss_pred CCCCCcCC--CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhhccc--
Confidence 99874332 67889999999998765 25779999999998865 679999999999997532
Q ss_pred cCCcceEEEEEecCCCccccCCCChhhhhc-cccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCC
Q 041217 167 SGNSQLLLVMKSHHLPAIDSVTYPIDSMLR-NLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGFP 245 (383)
Q Consensus 167 ~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~-~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp 245 (383)
.+++.||++++++.. ..+....+.. ++|++++|.||..+.. ...+..+ ......+.|... ++
T Consensus 153 --~~~~~LTaAPq~~~~---d~~~~~~i~~~~~D~i~vqfYn~~~c~--~~~~~~~---------~~~~~~~~w~~~-~~ 215 (280)
T cd02877 153 --SKKYYLTAAPQCPYP---DASLGDAIATGLFDFIFVQFYNNPCCS--YASGNAS---------GFNFNWDTWTSW-AK 215 (280)
T ss_pred --CCceEEEeccccCCc---chhHHHHHccCccCEEEEEEecCcccc--ccccccc---------hhhhHHHHHHHh-cc
Confidence 246899998665321 1233345554 8999999999964321 0011111 234566678764 66
Q ss_pred C---CcEEEecccc
Q 041217 246 A---NKLVLGLPYH 256 (383)
Q Consensus 246 ~---~Kivlglp~y 256 (383)
. +||++|+|..
T Consensus 216 ~~~~~kv~lGlpas 229 (280)
T cd02877 216 ATSNAKVFLGLPAS 229 (280)
T ss_pred cCCCceEEEecccC
Confidence 5 8999999864
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.86 E-value=1.3e-20 Score=175.04 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=116.3
Q ss_pred CCCCcEEEEEEEEEeCCCcEEEeCCcc----hhhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHH
Q 041217 47 SGLFTHLTCAFAYLNSSTFTLYINSTY----EKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSI 122 (383)
Q Consensus 47 ~~~~thii~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~ 122 (383)
...|+||+++|+....++ ++.+.... ...+..-++.+|++ |+||++|+|||... .+..+...|++|++++.
T Consensus 23 ~~g~~~v~lAFi~~~~~~-~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g~--~~~~~~~~~~~~~~a~~ 97 (294)
T cd06543 23 ATGVKAFTLAFIVASGGC-KPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASGT--PLATSCTSADQLAAAYQ 97 (294)
T ss_pred HcCCCEEEEEEEEcCCCC-cccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCCC--ccccCcccHHHHHHHHH
Confidence 357999999999887544 66665431 22334444578887 68999999999872 13336789999999999
Q ss_pred HHHHHcCCCeEEEeccCCCCCcc---hhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCcccc-CCCChhhhhc--
Q 041217 123 ETARLYGFQGLDLSGVLPSKSTN---MTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDS-VTYPIDSMLR-- 196 (383)
Q Consensus 123 ~~l~~~~~DGidiD~e~~~~~~~---~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~-~~~~~~~l~~-- 196 (383)
+++++|+|||||||||++.. .+ .+++..+|++|++++ +++.|++++|..+.... .++++-+.+.
T Consensus 98 ~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~---------p~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~ 167 (294)
T cd06543 98 KVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEY---------PDLKISFTLPVLPTGLTPDGLNVLEAAAAN 167 (294)
T ss_pred HHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHC---------CCcEEEEecCCCCCCCChhHHHHHHHHHHc
Confidence 99999999999999999875 44 377888888888776 35789999997776544 4567778888
Q ss_pred --cccEEEeeeccCCCC
Q 041217 197 --NLDWVHVRAYDYYLP 211 (383)
Q Consensus 197 --~vD~v~lm~yd~~~~ 211 (383)
.+|+||||+||+++.
T Consensus 168 Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 168 GVDLDTVNIMTMDYGSS 184 (294)
T ss_pred CCCcceeeeeeecCCCC
Confidence 899999999999754
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=4.3e-18 Score=148.09 Aligned_cols=176 Identities=15% Similarity=0.229 Sum_probs=117.5
Q ss_pred cCCCCcEEEEEecCCCCC--------CCCCCCC----CCCcEEEEEEEEEeCCCcEEEeCCc---chhhHHHHHHHHHhc
Q 041217 23 TSSTSWIKGGYWTSRSEL--------PVSQINS----GLFTHLTCAFAYLNSSTFTLYINST---YEKSFSSFTNTVKRK 87 (383)
Q Consensus 23 ~~~~~~~~~~Y~~~~~~~--------~~~~i~~----~~~thii~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lk~~ 87 (383)
...+.++.+|||++|..- +..+|.. ..++.+.++|..-.. ++.-..+ ....|+.-+..|.++
T Consensus 21 ~~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g---~iptf~P~~~~daeFr~~v~aLnae 97 (332)
T COG3469 21 PDISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGAG---DIPTFKPYNDPDAEFRAQVGALNAE 97 (332)
T ss_pred cccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecCC---CCcccCcCCCCHHHHHHHHHHhhcc
Confidence 345667999999993211 1111111 124445554443222 2211111 234555555556655
Q ss_pred CCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC--CcchhhHHHHHHHHHHHHHHHhh
Q 041217 88 NPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK--STNMTNLGILFDEWRAEVTSEAR 165 (383)
Q Consensus 88 ~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~ll~~l~~~l~~~~~ 165 (383)
|.-|++++||....+..-. .+-+.|+++|++++++|||||+|||.|.... ..+.....+.+|.+|+..+..|+
T Consensus 98 --GkavllsLGGAdghIeL~~---~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~Gk 172 (332)
T COG3469 98 --GKAVLLSLGGADGHIELKA---GQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGK 172 (332)
T ss_pred --CcEEEEEccCccceEEecc---chHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcCC
Confidence 7889999999988555433 3358999999999999999999999997542 24455788999999999998764
Q ss_pred ccCCcceEEEEEecCCCccccCCC--ChhhhhccccEEEeeeccCCCC
Q 041217 166 NSGNSQLLLVMKSHHLPAIDSVTY--PIDSMLRNLDWVHVRAYDYYLP 211 (383)
Q Consensus 166 ~~~~~~~~ls~a~~~~~~~~~~~~--~~~~l~~~vD~v~lm~yd~~~~ 211 (383)
++.||++...+.-.....| -+.++..+.||++.+.|+..|.
T Consensus 173 -----~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGd 215 (332)
T COG3469 173 -----NFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGD 215 (332)
T ss_pred -----ceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCC
Confidence 7899999876543222222 2678889999999999997653
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.43 E-value=2.7e-11 Score=111.60 Aligned_cols=204 Identities=17% Similarity=0.178 Sum_probs=123.1
Q ss_pred CCCcEEEEEecCC----CCCCCCCCCCCCCcEEEEEEEEEeCCCcEEEeC--C----cc------hhhHHHHHHHHHhcC
Q 041217 25 STSWIKGGYWTSR----SELPVSQINSGLFTHLTCAFAYLNSSTFTLYIN--S----TY------EKSFSSFTNTVKRKN 88 (383)
Q Consensus 25 ~~~~~~~~Y~~~~----~~~~~~~i~~~~~thii~~~~~~~~~~~~~~~~--~----~~------~~~~~~~~~~lk~~~ 88 (383)
...--+++||-.. ....-.......+..++++|+.--+.++++.++ + .. -.++..-++..+.+
T Consensus 24 ~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~CQS~- 102 (568)
T KOG4701|consen 24 TNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVCQSN- 102 (568)
T ss_pred ccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHHHhc-
Confidence 4445679999773 222233344566888888888644433343222 1 11 11223334444444
Q ss_pred CCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHH----------cCCCeEEEeccCCCCCcchhhHHHHHHHHHH
Q 041217 89 PSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARL----------YGFQGLDLSGVLPSKSTNMTNLGILFDEWRA 158 (383)
Q Consensus 89 p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~----------~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~ 158 (383)
|+|||+++||..+.+. +.+++..+.|++.+-+..-. .-+||+|||.|.. ....|.+|-+.|+.
T Consensus 103 -GiKVlLSLGG~~GnYs--~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g----~~~~ysaLA~~L~~ 175 (568)
T KOG4701|consen 103 -GIKVLLSLGGYNGNYS--LNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEKG----TNTAYSALAKRLLE 175 (568)
T ss_pred -CeEEEEeccCccccee--eccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeecC----CcchHHHHHHHHHH
Confidence 9999999999877443 45677788999999876544 2379999999944 33678899999999
Q ss_pred HHHHHhhccCCcceEEEEEecCCCccccCCCChhhhh-ccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 041217 159 EVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSML-RNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIR 237 (383)
Q Consensus 159 ~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~-~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~ 237 (383)
.|... .++|.|+.+..++......+ ..|. +-.||+-|+.|+-.... ...| ..+..++ +..
T Consensus 176 ~Fa~~-----~r~yYLsaAPQCP~PD~~~G---~aL~~~~fDf~~IQFYNN~~CS--~SsG--------~~Q~~fD-sW~ 236 (568)
T KOG4701|consen 176 IFASD-----PRRYYLSAAPQCPVPDHTLG---KALSENSFDFLSIQFYNNSTCS--GSSG--------SRQSTFD-AWV 236 (568)
T ss_pred HHccC-----CceEEeccCCCCCCCchhhh---hhhhccccceEEEEeecCCCcc--cccC--------cccccHH-HHH
Confidence 98754 45788998876544332211 2222 34799999999842210 0001 0111222 233
Q ss_pred HHHHcCCCCCc---EEEecccc
Q 041217 238 EWLKTGFPANK---LVLGLPYH 256 (383)
Q Consensus 238 ~~~~~gvp~~K---ivlglp~y 256 (383)
.|.. .+-++| ++||+|-.
T Consensus 237 ~ya~-~~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 237 EYAE-DSAYNKNTSLFLGLPGH 257 (568)
T ss_pred HHHh-hhcccccceEEeeccCC
Confidence 3443 466666 99999753
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.36 E-value=5.3e-06 Score=79.01 Aligned_cols=154 Identities=13% Similarity=0.104 Sum_probs=102.1
Q ss_pred HHHHHHhcCCCceEEEEEec-CC---ccchhhhcC-chhHHHHHHHHHHHHHHcCCCeEEEeccCCC-CCcchhhHHHHH
Q 041217 80 FTNTVKRKNPSVVTLLSIRG-GT---AIFSSMVNQ-SSNRKSFIESSIETARLYGFQGLDLSGVLPS-KSTNMTNLGILF 153 (383)
Q Consensus 80 ~~~~lk~~~p~~kvllsigg-~~---~~~~~~~~~-~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~-~~~~~~~~~~ll 153 (383)
.++.+|++ |+||+-+|-- +. ..+..++.+ ++.+..+|+.|+++++.|||||+.||+|... .+.+.+.+..|+
T Consensus 51 ~idaAHkn--GV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~ 128 (339)
T cd06547 51 WINAAHRN--GVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFL 128 (339)
T ss_pred HHHHHHhc--CCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHH
Confidence 55555655 9999977742 22 157778888 8999999999999999999999999999887 568899999999
Q ss_pred HHHHHHHHHHhhccCCcceEE--EEEecCC-CccccCC---CChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCC
Q 041217 154 DEWRAEVTSEARNSGNSQLLL--VMKSHHL-PAIDSVT---YPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSS 227 (383)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~l--s~a~~~~-~~~~~~~---~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~ 227 (383)
++|++++++.+ ++..+ -=++... .-.++.. .+ ....+.+|-+- .-|. |...
T Consensus 129 ~~L~~~~~~~~-----~~~~v~WYDs~t~~G~l~wQn~Ln~~N-~~ff~~~D~~F-lNY~----W~~~------------ 185 (339)
T cd06547 129 RYLKAKLHENV-----PGSLVIWYDSMTEDGKLSWQNELNSKN-KPFFDVCDGIF-LNYW----WTEE------------ 185 (339)
T ss_pred HHHHHHHhhcC-----CCcEEEEEecCCCCCccchhhhhhHHH-HHHHhhhccee-EecC----CCcc------------
Confidence 99999998752 12222 1111111 1111111 12 12224555331 1222 3221
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEecccceeeee
Q 041217 228 SWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQ 261 (383)
Q Consensus 228 ~~~~~~~~~~~~~~~gvp~~Kivlglp~yG~~~~ 261 (383)
..+..++.....|..+.+|.+|+=..|+...
T Consensus 186 ---~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 186 ---SLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred ---hHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 3445556666788999999999999987764
No 27
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.87 E-value=8.1e-05 Score=70.19 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=90.1
Q ss_pred HHHHHHhcCCCceEEEEE----ecCCccchhhhc-CchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCC-cchhhHHHHH
Q 041217 80 FTNTVKRKNPSVVTLLSI----RGGTAIFSSMVN-QSSNRKSFIESSIETARLYGFQGLDLSGVLPSKS-TNMTNLGILF 153 (383)
Q Consensus 80 ~~~~lk~~~p~~kvllsi----gg~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~-~~~~~~~~ll 153 (383)
.++.+|++ |+|||=+| ++.......++. +++....+++.++++++-|||||.-|++|.+... .+.+.+..|+
T Consensus 47 widaAHrn--GV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~ 124 (311)
T PF03644_consen 47 WIDAAHRN--GVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFL 124 (311)
T ss_dssp HHHHHHHT--T--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHH
T ss_pred hHHHHHhc--CceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHH
Confidence 55656655 99998444 222226777887 8888899999999999999999999999987664 6889999999
Q ss_pred HHHHHHHHHHhhccCCcceEEEEEecCC-CccccCCCCh--hhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCC
Q 041217 154 DEWRAEVTSEARNSGNSQLLLVMKSHHL-PAIDSVTYPI--DSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWF 230 (383)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~ls~a~~~~-~~~~~~~~~~--~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~ 230 (383)
++|+++.++ .. .-.++.-=++... ...++...+- ....+.+|-+-+ -| .|.+.
T Consensus 125 ~~l~~~~~~-~~---~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl-NY----~W~~~--------------- 180 (311)
T PF03644_consen 125 KYLRKEAHE-NP---GSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL-NY----NWNPD--------------- 180 (311)
T ss_dssp HHHHHHHHH-T----T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE--S------SHH---------------
T ss_pred HHHHHHhhc-CC---CcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE-ec----CCCcc---------------
Confidence 999999987 21 0112222222111 1111111110 111334454422 22 12211
Q ss_pred cHHHHHHHHHHcCCCCCcEEEecccceee
Q 041217 231 NTNDSIREWLKTGFPANKLVLGLPYHGYA 259 (383)
Q Consensus 231 ~~~~~~~~~~~~gvp~~Kivlglp~yG~~ 259 (383)
.+...++...+.+.++.+|-+|+=..|+.
T Consensus 181 ~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 181 SLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp HHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred cHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 46778888888999999999999999988
No 28
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.86 E-value=0.00018 Score=68.10 Aligned_cols=129 Identities=15% Similarity=0.199 Sum_probs=86.5
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEEe-ccCCC-----------------------CCcc-------hhhHHHHHHHHHH
Q 041217 110 QSSNRKSFIESSIETARLYGFQGLDLS-GVLPS-----------------------KSTN-------MTNLGILFDEWRA 158 (383)
Q Consensus 110 ~~~~r~~f~~~i~~~l~~~~~DGidiD-~e~~~-----------------------~~~~-------~~~~~~ll~~l~~ 158 (383)
.++.|+-.++-+.+++++|.+|||.|| +-+|. .+.+ +++...|++++++
T Consensus 135 ~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~ 214 (311)
T PF02638_consen 135 HPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYD 214 (311)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 456677777778889999999999999 44532 1233 5678899999999
Q ss_pred HHHHHhhccCCcceEEEEEecCCCc--cccCCCChhhhh--ccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHH
Q 041217 159 EVTSEARNSGNSQLLLVMKSHHLPA--IDSVTYPIDSML--RNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTND 234 (383)
Q Consensus 159 ~l~~~~~~~~~~~~~ls~a~~~~~~--~~~~~~~~~~l~--~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~ 234 (383)
++++. ++...+++++.+... ......|..... .++|++..|.|-.. .....+ ..+.
T Consensus 215 ~ik~~-----kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~------~~~~~~---------~~~~ 274 (311)
T PF02638_consen 215 AIKAI-----KPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSD------FSHFTA---------PYEQ 274 (311)
T ss_pred HHHHh-----CCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccc------cchhHH---------HHHH
Confidence 99986 457788877653331 111123544444 57999999999531 111111 4567
Q ss_pred HHHHHHHcCCCC-CcEEEeccccee
Q 041217 235 SIREWLKTGFPA-NKLVLGLPYHGY 258 (383)
Q Consensus 235 ~~~~~~~~gvp~-~Kivlglp~yG~ 258 (383)
.+..|.+.-.+. -+|.+|+.+|-.
T Consensus 275 ~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 275 LAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred HHHHHHHhhcCCCceEEEccCcCCC
Confidence 777787755543 489999988753
No 29
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.42 E-value=0.0025 Score=54.36 Aligned_cols=114 Identities=8% Similarity=0.061 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHH-cCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCC
Q 041217 112 SNRKSFIESSIETARL-YGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYP 190 (383)
Q Consensus 112 ~~r~~f~~~i~~~l~~-~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~ 190 (383)
+..++..+.+.++-.. +...||.|||..+. .....|..||++||+++. +++.|||+.=+.-.... . .
T Consensus 24 ~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~~LP--------~~~~LSIT~L~dW~~~~-~-~ 91 (181)
T PF11340_consen 24 QVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQRLP--------PDYRLSITALPDWLSSP-D-W 91 (181)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHHhCC--------CCceEeeEEehhhhcCc-h-h
Confidence 3444444444454433 35789999998654 477899999999999996 36788887653222111 1 3
Q ss_pred hhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcEEEecccce
Q 041217 191 IDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLPYHG 257 (383)
Q Consensus 191 ~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Kivlglp~yG 257 (383)
+..+...+|-+++|+|. |.. ..+ ....-+..+.... --.-+|+|.||
T Consensus 92 L~~L~~~VDE~VlQ~yq--Gl~-------d~~--------~~~~yl~~l~~l~---~PFriaLp~yG 138 (181)
T PF11340_consen 92 LNALPGVVDELVLQVYQ--GLF-------DPP--------NYARYLPRLARLT---LPFRIALPQYG 138 (181)
T ss_pred hhhHhhcCCeeEEEeec--CCC-------CHH--------HHHHHHHHHhcCC---CCeEEecCcCC
Confidence 78889999999999992 221 111 2233344444433 34678999999
No 30
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.41 E-value=0.013 Score=55.06 Aligned_cols=99 Identities=11% Similarity=0.158 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEec-cCCCC----------Cc----chhhHHHHHHHHHHHHHHHhhccCCcceEEEEEec
Q 041217 115 KSFIESSIETARLYGFQGLDLSG-VLPSK----------ST----NMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSH 179 (383)
Q Consensus 115 ~~f~~~i~~~l~~~~~DGidiD~-e~~~~----------~~----~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~ 179 (383)
.+..-.|++-+.+.|||.|.||+ .+|.. .. -.+....||+..+++++.. +..+|+.+.
T Consensus 123 w~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~-------~v~vSaDVf 195 (316)
T PF13200_consen 123 WDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPY-------GVPVSADVF 195 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHc-------CCCEEEEec
Confidence 45566788888889999999998 67761 11 2367889999999999864 457999998
Q ss_pred CCCccc----cCCCChhhhhccccEEEeeeccCCCCCCCCCCCCCCC
Q 041217 180 HLPAID----SVTYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSA 222 (383)
Q Consensus 180 ~~~~~~----~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~ap 222 (383)
+..... ..+-++..|+++||+|..|.|--| |.++..+...|
T Consensus 196 G~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh--~~~g~~g~~~P 240 (316)
T PF13200_consen 196 GYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH--YGPGFFGIDKP 240 (316)
T ss_pred ccccccCCCCCcCCCHHHHhhhCCEEEecccccc--cCcccCCCCCc
Confidence 544332 335789999999999999999643 44444443333
No 31
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=95.29 E-value=0.31 Score=46.88 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=65.6
Q ss_pred HHHhcCCCceEEEE-EecCCc---cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHH
Q 041217 83 TVKRKNPSVVTLLS-IRGGTA---IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRA 158 (383)
Q Consensus 83 ~lk~~~p~~kvlls-igg~~~---~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~ 158 (383)
..+++ |++|+=+ |..|.. .-..+++++++.+..++-++++.+-.||||--|+.|...+-....++..|++.|.+
T Consensus 119 ~AHrH--GV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~Lt~ 196 (526)
T KOG2331|consen 119 TAHRH--GVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHLTK 196 (526)
T ss_pred hhhhc--CceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHHHH
Confidence 45555 8998833 455653 67888999999999999999999999999999999977665677889999999999
Q ss_pred HHHHH
Q 041217 159 EVTSE 163 (383)
Q Consensus 159 ~l~~~ 163 (383)
++++.
T Consensus 197 ~~~~~ 201 (526)
T KOG2331|consen 197 VLHSS 201 (526)
T ss_pred HHhhc
Confidence 99874
No 32
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=91.72 E-value=10 Score=35.22 Aligned_cols=188 Identities=12% Similarity=0.048 Sum_probs=106.4
Q ss_pred CCCcEEEEEEEE-EeCCCc--EEEeCCcc----hhhHHHHHHHHHhcCCCceEEEEEe--cCCc----cchhh-------
Q 041217 48 GLFTHLTCAFAY-LNSSTF--TLYINSTY----EKSFSSFTNTVKRKNPSVVTLLSIR--GGTA----IFSSM------- 107 (383)
Q Consensus 48 ~~~thii~~~~~-~~~~~~--~~~~~~~~----~~~~~~~~~~lk~~~p~~kvllsig--g~~~----~~~~~------- 107 (383)
-..++|++..+. .+.+|. .+.+++.. ...+..+.=.++.+. ++||..-+. .+.. .+...
T Consensus 29 ~~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~ 107 (294)
T PF14883_consen 29 MGINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDP 107 (294)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCC
Confidence 357788886443 444431 15666653 333444432355444 788874443 2111 00000
Q ss_pred -------hcCchhHHHHHHHHHHHHHHc-CCCeEEE-------eccCCCCC------cchhhHHHHHHHHHHHHHHHhhc
Q 041217 108 -------VNQSSNRKSFIESSIETARLY-GFQGLDL-------SGVLPSKS------TNMTNLGILFDEWRAEVTSEARN 166 (383)
Q Consensus 108 -------~~~~~~r~~f~~~i~~~l~~~-~~DGidi-------D~e~~~~~------~~~~~~~~ll~~l~~~l~~~~~~ 166 (383)
--+++. ++.|++|-+=|..| .||||-| |+|.+... .....+..|..+|.+..+...
T Consensus 108 ~~y~RLSPf~p~~-r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~r-- 184 (294)
T PF14883_consen 108 DGYRRLSPFDPEA-RQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYR-- 184 (294)
T ss_pred CCceecCCCCHHH-HHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhC--
Confidence 012333 56788888888888 8999988 44422111 123467889999998888752
Q ss_pred cCCcceEEEEEecCCCccccC-----CCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 041217 167 SGNSQLLLVMKSHHLPAIDSV-----TYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLK 241 (383)
Q Consensus 167 ~~~~~~~ls~a~~~~~~~~~~-----~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~ 241 (383)
+.+...--+.+.+-..+. .-++....+..|+..+|+.-+... ... | .-++.+.++....
T Consensus 185 ---p~lkTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~----~~~---~------~~WL~~Lv~~v~~ 248 (294)
T PF14883_consen 185 ---PDLKTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQ----AED---P------EQWLAQLVDAVAA 248 (294)
T ss_pred ---ccchhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchhcc----ccC---H------HHHHHHHHHHHHh
Confidence 333333333332221111 246788888899999988755422 111 1 1266777777777
Q ss_pred cCCCCCcEEEeccc
Q 041217 242 TGFPANKLVLGLPY 255 (383)
Q Consensus 242 ~gvp~~Kivlglp~ 255 (383)
...+.+|+|+-+..
T Consensus 249 ~p~~l~KtvFELQa 262 (294)
T PF14883_consen 249 RPGGLDKTVFELQA 262 (294)
T ss_pred cCCcccceEEEEec
Confidence 66668999998865
No 33
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.46 E-value=12 Score=34.83 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=28.3
Q ss_pred HhcCCCceEEEEEec---CCc--------cchhhhcCc--hhHHHHHHHHHHHHHHcCCCeEEEeccCCC
Q 041217 85 KRKNPSVVTLLSIRG---GTA--------IFSSMVNQS--SNRKSFIESSIETARLYGFQGLDLSGVLPS 141 (383)
Q Consensus 85 k~~~p~~kvllsigg---~~~--------~~~~~~~~~--~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 141 (383)
|+++.|.|||+-+-= |.. .|..+--+. ...-.+.+.+++.+++ .||++||-+.+
T Consensus 112 RAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~---eGi~pdmVQVG 178 (403)
T COG3867 112 RAKNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK---EGILPDMVQVG 178 (403)
T ss_pred HHHhcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH---cCCCccceEec
Confidence 346779999988721 211 122221111 1112345666666666 46888886543
No 34
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=91.38 E-value=1.4 Score=40.74 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEEec-cCCCC---------------CcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEe
Q 041217 115 KSFIESSIETARLYGFQGLDLSG-VLPSK---------------STNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKS 178 (383)
Q Consensus 115 ~~f~~~i~~~l~~~~~DGidiD~-e~~~~---------------~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~ 178 (383)
-++--+|++-..+.|||-|.+|+ .+|.+ -+..+.+.+||.--|+++. .-||+.+
T Consensus 195 WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~----------vpIS~DI 264 (400)
T COG1306 195 WEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE----------VPISADI 264 (400)
T ss_pred hhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc----------cceEEEe
Confidence 44555788889999999999998 57753 1223567788888888885 3588888
Q ss_pred cCCC----ccccCCCChhhhhccccEEEeeeccCCC
Q 041217 179 HHLP----AIDSVTYPIDSMLRNLDWVHVRAYDYYL 210 (383)
Q Consensus 179 ~~~~----~~~~~~~~~~~l~~~vD~v~lm~yd~~~ 210 (383)
.... .....+.+++.++.+||.|..|.|--|-
T Consensus 265 YG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 265 YGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred ecccCccCCcchhhhhHHHHHhhhhhcccccccccc
Confidence 7432 2222346789999999999999997553
No 35
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=90.33 E-value=1.1 Score=36.71 Aligned_cols=62 Identities=10% Similarity=0.039 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEEec-CCc---------------------------cchhhhcCchhHHHHHHHHHHHH
Q 041217 74 EKSFSSFTNTVKRKNPSVVTLLSIRG-GTA---------------------------IFSSMVNQSSNRKSFIESSIETA 125 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvllsigg-~~~---------------------------~~~~~~~~~~~r~~f~~~i~~~l 125 (383)
...+.++++.+|++ |+||++-+.- +.. .+...--|...++.++..+-+++
T Consensus 43 ~Dllge~v~a~h~~--Girv~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~ 120 (132)
T PF14871_consen 43 RDLLGEQVEACHER--GIRVPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREIL 120 (132)
T ss_pred cCHHHHHHHHHHHC--CCEEEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHH
Confidence 45678888888888 8888854422 211 13445556678887888888899
Q ss_pred HHcCCCeEEEec
Q 041217 126 RLYGFQGLDLSG 137 (383)
Q Consensus 126 ~~~~~DGidiD~ 137 (383)
.+|++|||-+||
T Consensus 121 ~~y~~DGiF~D~ 132 (132)
T PF14871_consen 121 DRYDVDGIFFDI 132 (132)
T ss_pred HcCCCCEEEecC
Confidence 999999999986
No 36
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=89.13 E-value=4.6 Score=37.60 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=44.7
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCc------ch
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKST------NM 146 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~------~~ 146 (383)
....+.+.+...++..++..++++|+|.+ + +.++ .+++.+.++|+|+|+|++--|.... +.
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~~---------~---~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~ 147 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGSS---------K---EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQDP 147 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccCC---------H---HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCH
Confidence 33444433333443335788999998852 2 2333 4456667779999999997664321 23
Q ss_pred hhHHHHHHHHHHHH
Q 041217 147 TNLGILFDEWRAEV 160 (383)
Q Consensus 147 ~~~~~ll~~l~~~l 160 (383)
+...++++++|+.+
T Consensus 148 ~~~~eiv~~vr~~~ 161 (289)
T cd02810 148 EAVANLLKAVKAAV 161 (289)
T ss_pred HHHHHHHHHHHHcc
Confidence 44556666666654
No 37
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=85.38 E-value=7.6 Score=40.42 Aligned_cols=80 Identities=10% Similarity=0.174 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHhcCCCceEEEEEec--C----Cccch-------------------------hhhcCchhHHHHHHHHHH
Q 041217 75 KSFSSFTNTVKRKNPSVVTLLSIRG--G----TAIFS-------------------------SMVNQSSNRKSFIESSIE 123 (383)
Q Consensus 75 ~~~~~~~~~lk~~~p~~kvllsigg--~----~~~~~-------------------------~~~~~~~~r~~f~~~i~~ 123 (383)
..++.+++.++++ |++|++-+=- . ...|. ....++.-|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5689999888887 8999977611 0 00010 011345677888889989
Q ss_pred HHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHH
Q 041217 124 TARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 124 ~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
|++++++||+-+|.-.... ..+++++++++++.
T Consensus 307 W~~e~~iDGfR~D~~~~~~-------~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGIHD-------IETMNEIRKALNKI 339 (605)
T ss_pred HHHHcCCCEEEEechhcCC-------HHHHHHHHHHHHhh
Confidence 9999999999999652211 34788888888764
No 38
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.73 E-value=5.8 Score=40.71 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=59.0
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEec----CCc----------------cc--hhhhcCc---hhHHHHHHHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRG----GTA----------------IF--SSMVNQS---SNRKSFIESSIETARL 127 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg----~~~----------------~~--~~~~~~~---~~r~~f~~~i~~~l~~ 127 (383)
....++++++.++++ |++|++-+=- ... .| ..-..++ .-|+-+++++.-|+++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 355688999888887 9999987611 000 01 0112334 7778888999999999
Q ss_pred cCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 041217 128 YGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEA 164 (383)
Q Consensus 128 ~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~ 164 (383)
+++||+-+|--...... .-..|++++++++++..
T Consensus 236 ~~iDGfR~D~~~~~~~~---~~~~~l~~~~~~~~~~~ 269 (542)
T TIGR02402 236 YHFDGLRLDAVHAIADT---SAKHILEELAREVHELA 269 (542)
T ss_pred hCCcEEEEeCHHHhccc---cHHHHHHHHHHHHHHHC
Confidence 99999999963211111 12579999999988754
No 39
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.90 E-value=2.6 Score=41.25 Aligned_cols=90 Identities=13% Similarity=0.211 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEEecc--CCCC-------------------Ccc--------hhhHHHHHHHHHHHHHH
Q 041217 112 SNRKSFIESSIETARLYGFQGLDLSGV--LPSK-------------------STN--------MTNLGILFDEWRAEVTS 162 (383)
Q Consensus 112 ~~r~~f~~~i~~~l~~~~~DGidiD~e--~~~~-------------------~~~--------~~~~~~ll~~l~~~l~~ 162 (383)
+-|+-..+-+++.++.|..|||.||-- +|.. +.+ +++..+|++.+...+++
T Consensus 182 evq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKa 261 (418)
T COG1649 182 EVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKA 261 (418)
T ss_pred HHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 444444466779999999999999832 2321 111 35678999999999998
Q ss_pred HhhccCCcceEEEEEe-cCCCccccCCCC-----hhhh--hccccEEEeeecc
Q 041217 163 EARNSGNSQLLLVMKS-HHLPAIDSVTYP-----IDSM--LRNLDWVHVRAYD 207 (383)
Q Consensus 163 ~~~~~~~~~~~ls~a~-~~~~~~~~~~~~-----~~~l--~~~vD~v~lm~yd 207 (383)
. +++..++++. ++ .....-.|+ .... ..++|++..|.|=
T Consensus 262 v-----Kp~v~~svsp~n~-~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr 308 (418)
T COG1649 262 V-----KPNVKFSVSPFNP-LGSATFAYDYFLQDWRRWVRQGLIDELAPQVYR 308 (418)
T ss_pred h-----CCCeEEEEccCCC-CCccceehhhhhhhHHHHHHcccHhhhhhhhhc
Confidence 6 5678888877 31 111000222 2222 3478999999994
No 40
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=82.60 E-value=15 Score=35.35 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEecCCc--c--c--------hh------------hhcC--chhHHHHHHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRGGTA--I--F--------SS------------MVNQ--SSNRKSFIESSIETAR 126 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg~~~--~--~--------~~------------~~~~--~~~r~~f~~~i~~~l~ 126 (383)
.-..++++++.+|++ +.|+++-|...+. . . +. |-.+ .+..+.|++... .++
T Consensus 75 ~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~-ra~ 151 (343)
T cd04734 75 IIPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAAR-RCQ 151 (343)
T ss_pred HHHHHHHHHHHHHhc--CCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHH-HHH
Confidence 345688888888886 7788887743211 0 0 00 0000 133456665444 445
Q ss_pred HcCCCeEEEecc
Q 041217 127 LYGFQGLDLSGV 138 (383)
Q Consensus 127 ~~~~DGidiD~e 138 (383)
+-|||||+|..-
T Consensus 152 ~aGfDgVeih~a 163 (343)
T cd04734 152 AGGLDGVELQAA 163 (343)
T ss_pred HcCCCEEEEccc
Confidence 579999999983
No 41
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=82.33 E-value=15 Score=35.14 Aligned_cols=46 Identities=4% Similarity=-0.006 Sum_probs=27.5
Q ss_pred CcEEEEEEEEEeCCCc----EEE-eCCcchhhHHHHHHHHHhcCCCceEEEEE
Q 041217 50 FTHLTCAFAYLNSSTF----TLY-INSTYEKSFSSFTNTVKRKNPSVVTLLSI 97 (383)
Q Consensus 50 ~thii~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~lk~~~p~~kvllsi 97 (383)
+--|+.....+.+.+. .+. +.+..-..++++.+.+|+. |.|+++-|
T Consensus 47 ~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 47 AGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 4445555555555431 122 2333456678888888876 78888777
No 42
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=81.51 E-value=22 Score=34.43 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEEecCC
Q 041217 74 EKSFSSFTNTVKRKNPSVVTLLSIRGGT 101 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvllsigg~~ 101 (383)
-..++++.+.+|++ |.|+++-|...+
T Consensus 82 i~~~~~vt~avH~~--G~~i~iQL~H~G 107 (363)
T COG1902 82 IPGLKRLTEAVHAH--GAKIFIQLWHAG 107 (363)
T ss_pred hHHHHHHHHHHHhc--CCeEEEEeccCc
Confidence 56688888888887 678888885533
No 43
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.50 E-value=27 Score=33.68 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=39.4
Q ss_pred CCcchhhHHHHHHHHHhcCCCceEEEEEecCCc----cch---------------------hhhcC---chhHHHHHHHH
Q 041217 70 NSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA----IFS---------------------SMVNQ---SSNRKSFIESS 121 (383)
Q Consensus 70 ~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~----~~~---------------------~~~~~---~~~r~~f~~~i 121 (383)
.+..-..++++++.+|++ |.|+++-|...+. .+. ..++. .+-.+.|++..
T Consensus 73 ~d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 73 DDSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred ChhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 444567788999888877 7888877733211 000 00100 12335666554
Q ss_pred HHHHHHcCCCeEEEecc
Q 041217 122 IETARLYGFQGLDLSGV 138 (383)
Q Consensus 122 ~~~l~~~~~DGidiD~e 138 (383)
.+ +++.|||||+|..-
T Consensus 151 ~~-a~~aGfDgVeih~a 166 (353)
T cd04735 151 RR-AIEAGFDGVEIHGA 166 (353)
T ss_pred HH-HHHcCCCEEEEccc
Confidence 44 55679999999863
No 44
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=81.32 E-value=6.4 Score=37.85 Aligned_cols=78 Identities=13% Similarity=0.219 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCCceEEEEE-------ecCCccchhhh-cCchhHHHHHHHHHHHHHHcCCCeEEEeccCCC-CCcchhhH
Q 041217 79 SFTNTVKRKNPSVVTLLSI-------RGGTAIFSSMV-NQSSNRKSFIESSIETARLYGFQGLDLSGVLPS-KSTNMTNL 149 (383)
Q Consensus 79 ~~~~~lk~~~p~~kvllsi-------gg~~~~~~~~~-~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~-~~~~~~~~ 149 (383)
.+++..++. |+.|+=.| ||...-+..|+ ++++-.--+++.+++..+.|||||--|+=|-.+ .+...+++
T Consensus 131 DVIDaaHrN--GVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M 208 (553)
T COG4724 131 DVIDAAHRN--GVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKM 208 (553)
T ss_pred hhhhhhhcC--CCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHH
Confidence 456544433 88888555 33222344444 444556678999999999999999999988544 35666777
Q ss_pred HHHHHHHHH
Q 041217 150 GILFDEWRA 158 (383)
Q Consensus 150 ~~ll~~l~~ 158 (383)
.+|+..+++
T Consensus 209 ~~f~ly~ke 217 (553)
T COG4724 209 RQFMLYSKE 217 (553)
T ss_pred HHHHHHHHh
Confidence 777776664
No 45
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=81.10 E-value=20 Score=34.48 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=35.7
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEecCCc--c-----------------chhhhcC---chhHHHHHHHHHHHHHHcCC
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRGGTA--I-----------------FSSMVNQ---SSNRKSFIESSIETARLYGF 130 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg~~~--~-----------------~~~~~~~---~~~r~~f~~~i~~~l~~~~~ 130 (383)
.-..++++++.+|+. +.|+++-|...+. . ....++. .+..+.|++... .+++-||
T Consensus 75 ~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~-~a~~aGf 151 (353)
T cd02930 75 QAAGHRLITDAVHAE--GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAA-LAREAGY 151 (353)
T ss_pred HHHHHHHHHHHHHHc--CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 445577888788876 7888888733211 0 0001111 123355665444 4555799
Q ss_pred CeEEEec
Q 041217 131 QGLDLSG 137 (383)
Q Consensus 131 DGidiD~ 137 (383)
|||+|..
T Consensus 152 DgVeih~ 158 (353)
T cd02930 152 DGVEIMG 158 (353)
T ss_pred CEEEEec
Confidence 9999976
No 46
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=80.69 E-value=11 Score=35.73 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEEec----cCCC-----CCcchhhHHHHHHHHHHHHHHH
Q 041217 112 SNRKSFIESSIETARLYGFQGLDLSG----VLPS-----KSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 112 ~~r~~f~~~i~~~l~~~~~DGidiD~----e~~~-----~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
+-|+-+. +-++-+.+.||||+.+|. ++.. .+...+....++++|.+..++.
T Consensus 144 ~W~~il~-~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~ 203 (315)
T TIGR01370 144 EWKAIAF-SYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQ 203 (315)
T ss_pred HHHHHHH-HHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3344444 446777788999999985 2111 1234467889999998777764
No 47
>PRK12568 glycogen branching enzyme; Provisional
Probab=80.43 E-value=19 Score=38.19 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=60.4
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEec----CC--------c---------------cchh---hhcCchhHHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRG----GT--------A---------------IFSS---MVNQSSNRKSFIESSI 122 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg----~~--------~---------------~~~~---~~~~~~~r~~f~~~i~ 122 (383)
....++.+++.++++ |++|++-+=- .. . .|.. -..+++-|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 456789999988887 8999987611 00 0 1111 2345677888999999
Q ss_pred HHHHHcCCCeEEEec-c-------------C-CCCCcchhh--HHHHHHHHHHHHHHH
Q 041217 123 ETARLYGFQGLDLSG-V-------------L-PSKSTNMTN--LGILFDEWRAEVTSE 163 (383)
Q Consensus 123 ~~l~~~~~DGidiD~-e-------------~-~~~~~~~~~--~~~ll~~l~~~l~~~ 163 (383)
-|++++++||+-+|- . + |.....+++ -..|++++++.+++.
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~ 452 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQ 452 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 999999999999993 1 1 110011222 358999999999876
No 48
>PRK12313 glycogen branching enzyme; Provisional
Probab=79.94 E-value=18 Score=37.84 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=58.9
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEec--CC-----c-c-------------------ch---hhhcCchhHHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRG--GT-----A-I-------------------FS---SMVNQSSNRKSFIESSI 122 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg--~~-----~-~-------------------~~---~~~~~~~~r~~f~~~i~ 122 (383)
....++.+++.++++ |++|++-+=- .+ . . |. .-..+++-|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 356689999988888 8999987511 00 0 0 10 01235677888889999
Q ss_pred HHHHHcCCCeEEEecc-CC----------------CCCcchhhHHHHHHHHHHHHHHH
Q 041217 123 ETARLYGFQGLDLSGV-LP----------------SKSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 123 ~~l~~~~~DGidiD~e-~~----------------~~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
-|++++++||+-+|-- .. +...+ ..-..|++++++.+++.
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~fl~~~~~~v~~~ 352 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGREN-LEAIYFLQKLNEVVYLE 352 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCC-cHHHHHHHHHHHHHHHH
Confidence 9999999999999931 00 00011 12368999999999875
No 49
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=79.70 E-value=22 Score=37.13 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=59.4
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEec-CCc--------------------------cchh---hhcCchhHHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRG-GTA--------------------------IFSS---MVNQSSNRKSFIESSI 122 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg-~~~--------------------------~~~~---~~~~~~~r~~f~~~i~ 122 (383)
....++.+++.++++ |++|++-+-- ... .|.. -..+++-|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 355689999988887 9999987511 000 0110 1245778888899999
Q ss_pred HHHHHcCCCeEEEecc-CCC------C-----Cc-----chhhHHHHHHHHHHHHHHH
Q 041217 123 ETARLYGFQGLDLSGV-LPS------K-----ST-----NMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 123 ~~l~~~~~DGidiD~e-~~~------~-----~~-----~~~~~~~ll~~l~~~l~~~ 163 (383)
-|+++|++||+-+|-- ... . +. ....=..|++++++.+++.
T Consensus 282 ~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~ 339 (613)
T TIGR01515 282 YWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEA 339 (613)
T ss_pred HHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHH
Confidence 9999999999999962 110 0 00 0112357999999998875
No 50
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=75.48 E-value=28 Score=33.36 Aligned_cols=86 Identities=7% Similarity=0.099 Sum_probs=47.1
Q ss_pred CcEEEEEEEEEeCCCc----EEE-eCCcchhhHHHHHHHHHhcCCCceEEEEEecCCc--cc------------------
Q 041217 50 FTHLTCAFAYLNSSTF----TLY-INSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA--IF------------------ 104 (383)
Q Consensus 50 ~thii~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~--~~------------------ 104 (383)
+--|+.....+.+++. .+. +.+..-..++++.+.+|++ +.++++-|...+. ..
T Consensus 51 ~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~ 128 (337)
T PRK13523 51 VGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKT 128 (337)
T ss_pred CeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCC
Confidence 4444555555555431 121 2333455678888888876 7888888743211 00
Q ss_pred hhhhcCc---hhHHHHHHHHHHHHHHcCCCeEEEecc
Q 041217 105 SSMVNQS---SNRKSFIESSIETARLYGFQGLDLSGV 138 (383)
Q Consensus 105 ~~~~~~~---~~r~~f~~~i~~~l~~~~~DGidiD~e 138 (383)
...++.+ +..+.|++.. +.+++.|||||+|.--
T Consensus 129 p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~a 164 (337)
T PRK13523 129 PVEMTKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 0001100 3345666544 5556679999999865
No 51
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=74.63 E-value=25 Score=33.75 Aligned_cols=48 Identities=4% Similarity=-0.007 Sum_probs=29.8
Q ss_pred CcEEEEEEEEEeCCCc----EEEe-CCcchhhHHHHHHHHHhcCCCceEEEEEec
Q 041217 50 FTHLTCAFAYLNSSTF----TLYI-NSTYEKSFSSFTNTVKRKNPSVVTLLSIRG 99 (383)
Q Consensus 50 ~thii~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~p~~kvllsigg 99 (383)
+--||.....+++.+. .+.+ .++.-..++++++.+|+. |.|+++-|..
T Consensus 50 ~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL~H 102 (341)
T PF00724_consen 50 AGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQLWH 102 (341)
T ss_dssp TSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEEE-
T ss_pred CceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--Cccceeeccc
Confidence 4556666666666542 1222 223445578888888887 8899987754
No 52
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=74.40 E-value=13 Score=39.02 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccC-----CCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCC
Q 041217 149 LGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSV-----TYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSAL 223 (383)
Q Consensus 149 ~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~-----~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl 223 (383)
+..|-.+|.+.+++.. ++.+...-.+.+.+..... .-++....+..|++-+|+.-+.. ..+.+.+
T Consensus 514 l~~f~~~l~~~v~~~~----~~~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampyme----~~~~~~~-- 583 (671)
T PRK14582 514 LTDFTLELSARVKAIR----GPQVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLME----GVAEKSS-- 583 (671)
T ss_pred HHHHHHHHHHHHHhhc----CccceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhhh----ccCcccH--
Confidence 4577778888777642 2233333333333222111 24678888999999999954331 1111111
Q ss_pred CCCCCCCcHHHHHHHHHHcCCCCCcEEEeccc
Q 041217 224 YSSSSWFNTNDSIREWLKTGFPANKLVLGLPY 255 (383)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~gvp~~Kivlglp~ 255 (383)
.-+..+.++.+.+.-...+|+|+-+..
T Consensus 584 -----~~wl~~l~~~v~~~~~~~~k~vfelq~ 610 (671)
T PRK14582 584 -----DAWLIQLVNQVKNIPGALDKTIFELQA 610 (671)
T ss_pred -----HHHHHHHHHHHHhcCCcccceEEEeec
Confidence 125566666666555567999998865
No 53
>PLN02960 alpha-amylase
Probab=74.09 E-value=36 Score=36.83 Aligned_cols=88 Identities=8% Similarity=0.064 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEe----------------cCC---------c---cchh---hhcCchhHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIR----------------GGT---------A---IFSS---MVNQSSNRKSFIESS 121 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsig----------------g~~---------~---~~~~---~~~~~~~r~~f~~~i 121 (383)
....++.+++.++++ |++|++-+= |.. . .|.. -..+++-|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 355688999988887 899998861 000 0 1111 134567788888999
Q ss_pred HHHHHHcCCCeEEEecc-------------------CCCCCcchhhHHHHHHHHHHHHHHH
Q 041217 122 IETARLYGFQGLDLSGV-------------------LPSKSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 122 ~~~l~~~~~DGidiD~e-------------------~~~~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
.-|+++|++||+-+|=- ++... ....-..||+++.+.+++.
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~-~d~~Ai~fL~~lN~~v~~~ 601 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQY-VDRDALIYLILANEMLHQL 601 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCcc-CCchHHHHHHHHHHHHHhh
Confidence 99999999999999821 11111 1234678899999888864
No 54
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=73.69 E-value=62 Score=34.09 Aligned_cols=190 Identities=13% Similarity=0.059 Sum_probs=103.1
Q ss_pred CCcEEEEEEE-EEeCCCc--EEEeCCcc----hhhHHHHHHHHHhcCCCceEEEEE--ecCCc--------cc-------
Q 041217 49 LFTHLTCAFA-YLNSSTF--TLYINSTY----EKSFSSFTNTVKRKNPSVVTLLSI--RGGTA--------IF------- 104 (383)
Q Consensus 49 ~~thii~~~~-~~~~~~~--~~~~~~~~----~~~~~~~~~~lk~~~p~~kvllsi--gg~~~--------~~------- 104 (383)
..+||.+..+ ..+.+|. .+.+++.. ...|..+.=.++.+. ++||..-+ -++.. .+
T Consensus 347 ~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~~ 425 (672)
T PRK14581 347 RVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGKT 425 (672)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCcc
Confidence 5899999744 3544441 26777664 444555522466654 78887333 22211 00
Q ss_pred -------hhh-hcCchhHHHHHHHHHHHHHHc-CCCeEEE-------eccCCC--------------C-------Cc---
Q 041217 105 -------SSM-VNQSSNRKSFIESSIETARLY-GFQGLDL-------SGVLPS--------------K-------ST--- 144 (383)
Q Consensus 105 -------~~~-~~~~~~r~~f~~~i~~~l~~~-~~DGidi-------D~e~~~--------------~-------~~--- 144 (383)
..+ --+++. ++.+.+|-+=|..| .||||-| |+|-.+ + ++
T Consensus 426 ~~~~~~y~rlspf~~~~-~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~~ 504 (672)
T PRK14581 426 SIDPDQYRRLSPFNPEV-RQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMMQ 504 (672)
T ss_pred ccCCCCccccCCCCHHH-HHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHHH
Confidence 000 012222 46788888888887 8999988 344222 0 00
Q ss_pred -----chhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccC-----CCChhhhhccccEEEeeeccCCCCCCC
Q 041217 145 -----NMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSV-----TYPIDSMLRNLDWVHVRAYDYYLPSRD 214 (383)
Q Consensus 145 -----~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~-----~~~~~~l~~~vD~v~lm~yd~~~~~~~ 214 (383)
....+..|-.+|.+.+++.. ++.+...-.+.+.+..... .-++..+.+..|++-+|+|-+.-
T Consensus 505 ~w~~~k~~~l~~f~~~l~~~v~~~~----~p~~~tarniya~~~l~p~~~~w~aQ~l~~~~~~yD~~a~mamp~me---- 576 (672)
T PRK14581 505 RWTRYKSKYLIDFTNELTREVRDIR----GPQVKSARNIFAMPILEPESEAWFAQNLDDFLANYDWVAPMAMPLME---- 576 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----CccceehhcccccccCChhHHHHHHhHHHHHHhhcchhHHhhchhhh----
Confidence 12334577788888887642 1233333333332221111 24678888999999999986431
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcEEEeccc
Q 041217 215 NFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLPY 255 (383)
Q Consensus 215 ~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Kivlglp~ 255 (383)
....+.+ .-+..+.++.+.+.-...+|+|+-+..
T Consensus 577 ~~~~~~~-------~~w~~~l~~~v~~~~~~~~k~vfelQ~ 610 (672)
T PRK14581 577 KVPLSES-------NEWLAELVNKVAQRPGALEKTVFELQS 610 (672)
T ss_pred ccccccH-------HHHHHHHHHHHHhcCCcccceEEEeec
Confidence 1111111 114455555555444467999998865
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=73.06 E-value=37 Score=36.23 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=59.8
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEec--C--Cc-----------------------cch---hhhcCchhHHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRG--G--TA-----------------------IFS---SMVNQSSNRKSFIESSI 122 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg--~--~~-----------------------~~~---~~~~~~~~r~~f~~~i~ 122 (383)
....++.+++.++++ |++|++-+=- . .. .|. .-..+++-|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 356689999988887 9999987511 0 00 011 12345677888889999
Q ss_pred HHHHHcCCCeEEEec-cCC--------------CC--CcchhhHHHHHHHHHHHHHHH
Q 041217 123 ETARLYGFQGLDLSG-VLP--------------SK--STNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 123 ~~l~~~~~DGidiD~-e~~--------------~~--~~~~~~~~~ll~~l~~~l~~~ 163 (383)
-|++++++||+-+|- ... .. ..+...-..|++++++.+++.
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEE 448 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999994 211 00 011123468999999999875
No 56
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=72.83 E-value=51 Score=31.95 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=18.5
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEec
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRG 99 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg 99 (383)
.-..++++.+.+|++ |.|+++-|..
T Consensus 77 ~i~~~~~lad~vH~~--Ga~i~~QL~H 101 (362)
T PRK10605 77 QIAAWKKITAGVHAE--GGHIAVQLWH 101 (362)
T ss_pred HHHHHHHHHHHHHhC--CCEEEEeccC
Confidence 345678888888877 8898888743
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=71.31 E-value=49 Score=34.73 Aligned_cols=89 Identities=8% Similarity=0.046 Sum_probs=59.8
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEec----CCc-----------------------cchh---hhcCchhHHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRG----GTA-----------------------IFSS---MVNQSSNRKSFIESSI 122 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg----~~~-----------------------~~~~---~~~~~~~r~~f~~~i~ 122 (383)
....++.+++.++++ |++|++-+=- +.. .|.. -..+++-|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 356688999888887 8999977511 000 1111 1235678888889999
Q ss_pred HHHHHcCCCeEEEec-cCCC--C----------C--cchhhHHHHHHHHHHHHHHH
Q 041217 123 ETARLYGFQGLDLSG-VLPS--K----------S--TNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 123 ~~l~~~~~DGidiD~-e~~~--~----------~--~~~~~~~~ll~~l~~~l~~~ 163 (383)
-|++++++||+-+|- .... . . .....=..||+++++.+++.
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~ 348 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHM 348 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHh
Confidence 999999999999994 2210 0 0 11123468999999998875
No 58
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=70.45 E-value=36 Score=33.26 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHhcCCCceEEEEEec-CCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC
Q 041217 75 KSFSSFTNTVKRKNPSVVTLLSIRG-GTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK 142 (383)
Q Consensus 75 ~~~~~~~~~lk~~~p~~kvllsigg-~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~ 142 (383)
..+.+.+..+|++.|.+.+++||.| .+ .+.+. .+++.+++.|.|+|+|++--|..
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s------------~~~~~-~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYN------------KDAWE-EIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCC------------HHHHH-HHHHHHHhcCCCEEEEECCCCCC
Confidence 3344334567777788999999955 32 13333 34455677899999999976654
No 59
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=70.37 E-value=6.7 Score=28.93 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=28.7
Q ss_pred cchhhhcC-chhHHHHHHHHHHHHHHcCCCeEEEec
Q 041217 103 IFSSMVNQ-SSNRKSFIESSIETARLYGFQGLDLSG 137 (383)
Q Consensus 103 ~~~~~~~~-~~~r~~f~~~i~~~l~~~~~DGidiD~ 137 (383)
.+....-+ +.-|+.+++.+++.+..-.+|||.+|-
T Consensus 40 ~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 40 HYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 34444444 899999999999999988999999985
No 60
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=69.57 E-value=24 Score=37.40 Aligned_cols=83 Identities=8% Similarity=0.029 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEEec----CC-------------------------c---cc-----hhhhcCchhHHH
Q 041217 74 EKSFSSFTNTVKRKNPSVVTLLSIRG----GT-------------------------A---IF-----SSMVNQSSNRKS 116 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvllsigg----~~-------------------------~---~~-----~~~~~~~~~r~~ 116 (383)
...++++++.+|++ |++|++-+=- .. . .+ ..-..++.-|+-
T Consensus 244 ~~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 244 VAEFKTMVRALHDA--GIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 34688899888887 9999987610 00 0 00 011234566777
Q ss_pred HHHHHHHHHHHcCCCeEEEeccCCCC--CcchhhHHHHHHHHHH
Q 041217 117 FIESSIETARLYGFQGLDLSGVLPSK--STNMTNLGILFDEWRA 158 (383)
Q Consensus 117 f~~~i~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~ll~~l~~ 158 (383)
+++++.-|++++++||+-||.-.... .........|+++|++
T Consensus 322 i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 322 VMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 78888899999999999999753221 1111223456777765
No 61
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=68.17 E-value=9.1 Score=39.71 Aligned_cols=81 Identities=14% Similarity=-0.034 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCceEEEEE---ecCCc-cchhhhcCchhHHHHHHHHHHHH-HHcCCCeEEEeccCCCCCcchhhHHHHH
Q 041217 79 SFTNTVKRKNPSVVTLLSI---RGGTA-IFSSMVNQSSNRKSFIESSIETA-RLYGFQGLDLSGVLPSKSTNMTNLGILF 153 (383)
Q Consensus 79 ~~~~~lk~~~p~~kvllsi---gg~~~-~~~~~~~~~~~r~~f~~~i~~~l-~~~~~DGidiD~e~~~~~~~~~~~~~ll 153 (383)
.+++..|++||++|+...= =||-. .+..-. ...+.-+.-++++| -.+.-.|++|||-.+ . .++..=...+
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~~g~~~~~---~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~-~-NEr~~~~~~i 190 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVGNGWNWPY---DNPQLTAYYVVSWLLGAKKTHGLDIDYVGI-W-NERGFDVNYI 190 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGGTTSS-TT---SSHHHHHHHHHHHHHHHHHHH-----EE-S---TTS---HHHH
T ss_pred hhHHHHHhhCCCCeEEEeccCCCccccCCCCCcc---cchhhhhHHHHHHHHHHHHHhCCCceEech-h-hccCCChhHH
Confidence 4566799999999987322 22322 111111 11222333455655 222234567887644 1 2333335788
Q ss_pred HHHHHHHHHHh
Q 041217 154 DEWRAEVTSEA 164 (383)
Q Consensus 154 ~~l~~~l~~~~ 164 (383)
|.||..+++.+
T Consensus 191 k~lr~~l~~~g 201 (669)
T PF02057_consen 191 KWLRKALNSNG 201 (669)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhcc
Confidence 99999998765
No 62
>PRK10785 maltodextrin glucosidase; Provisional
Probab=68.07 E-value=39 Score=35.18 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=36.1
Q ss_pred cCchhHHHHHH---H-HHHHHHH-cCCCeEEEeccCCC-CCcchhhHHHHHHHHHHHHHHH
Q 041217 109 NQSSNRKSFIE---S-SIETARL-YGFQGLDLSGVLPS-KSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 109 ~~~~~r~~f~~---~-i~~~l~~-~~~DGidiD~e~~~-~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
.|++-|+.+++ + +..|+++ +|+||.-+|--... .......-..|++++++++++.
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~ 363 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEE 363 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhh
Confidence 35677777775 3 4457886 89999999964211 1111122357999999998875
No 63
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=67.85 E-value=45 Score=37.32 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHhcCCCceEEEEEec-CC---ccc------------------------hhhhcCchhHHHHHHHHHHHHH
Q 041217 75 KSFSSFTNTVKRKNPSVVTLLSIRG-GT---AIF------------------------SSMVNQSSNRKSFIESSIETAR 126 (383)
Q Consensus 75 ~~~~~~~~~lk~~~p~~kvllsigg-~~---~~~------------------------~~~~~~~~~r~~f~~~i~~~l~ 126 (383)
..++++++.+|++ |++|++-+=- .+ ..| .....++.-|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 4688899888887 8999987511 00 000 0111235667778899999999
Q ss_pred HcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHH
Q 041217 127 LYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 127 ~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
+|++||+-||.-.. -+. .++++++.++++.
T Consensus 633 ey~VDGFRfDl~g~---~d~----~~~~~~~~~l~~~ 662 (1111)
T TIGR02102 633 EFKVDGFRFDMMGD---HDA----ASIEIAYKEAKAI 662 (1111)
T ss_pred hcCCcEEEEecccc---CCH----HHHHHHHHHHHHh
Confidence 99999999997521 122 3455555555543
No 64
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=67.57 E-value=25 Score=32.31 Aligned_cols=60 Identities=17% Similarity=0.030 Sum_probs=44.2
Q ss_pred EeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCC
Q 041217 68 YINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPS 141 (383)
Q Consensus 68 ~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 141 (383)
.+....-...+++++.||++ |+|+++.+--. .|+-+.+.+.+++.+.|+||+=+|+..|.
T Consensus 59 ~~d~~~Fpdp~~~i~~l~~~--g~~~~~~~~P~------------v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 59 DWDAGKFPNPKSMIDELHDN--GVKLVLWIDPY------------IREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred ecChhhCCCHHHHHHHHHHC--CCEEEEEeChh------------HHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 44444445567888889886 89999987432 27777777777778899999999995443
No 65
>PRK03705 glycogen debranching enzyme; Provisional
Probab=66.70 E-value=29 Score=36.53 Aligned_cols=62 Identities=6% Similarity=0.044 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhcCCCceEEEEEec-------CCc-----------------------cc-----hhhhcCchhHHHHHH
Q 041217 75 KSFSSFTNTVKRKNPSVVTLLSIRG-------GTA-----------------------IF-----SSMVNQSSNRKSFIE 119 (383)
Q Consensus 75 ~~~~~~~~~lk~~~p~~kvllsigg-------~~~-----------------------~~-----~~~~~~~~~r~~f~~ 119 (383)
..++++++.++++ |+||++-+=- ... .| ..-..++.-|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4688899888877 9999987611 000 00 011235677888889
Q ss_pred HHHHHHHHcCCCeEEEecc
Q 041217 120 SSIETARLYGFQGLDLSGV 138 (383)
Q Consensus 120 ~i~~~l~~~~~DGidiD~e 138 (383)
++.-|++++++||+-||.-
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9999999999999999974
No 66
>PLN02411 12-oxophytodienoate reductase
Probab=66.66 E-value=14 Score=36.11 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=18.1
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEe
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIR 98 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsig 98 (383)
.-..++++++.+|++ |.|+++-|.
T Consensus 85 ~i~~~~~l~~avH~~--G~~i~~QL~ 108 (391)
T PLN02411 85 QVEAWKKVVDAVHAK--GSIIFCQLW 108 (391)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEecc
Confidence 455678888888877 788888773
No 67
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=66.48 E-value=28 Score=33.79 Aligned_cols=87 Identities=11% Similarity=0.198 Sum_probs=47.1
Q ss_pred CcEEEEEEEEEeCCCc-----EE-EeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCc---c-------ch--------
Q 041217 50 FTHLTCAFAYLNSSTF-----TL-YINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA---I-------FS-------- 105 (383)
Q Consensus 50 ~thii~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~---~-------~~-------- 105 (383)
+--|+-....+.+++. .+ -+.|..-..++++++.+|++ +.|+++-|...+. . +.
T Consensus 52 ~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 52 WGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred ceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 3344455555655441 11 12333455678888888876 7888877733211 0 00
Q ss_pred --------hhhcCc---hhHHHHHHHHHHHHHHcCCCeEEEeccC
Q 041217 106 --------SMVNQS---SNRKSFIESSIETARLYGFQGLDLSGVL 139 (383)
Q Consensus 106 --------~~~~~~---~~r~~f~~~i~~~l~~~~~DGidiD~e~ 139 (383)
..++.+ +..+.|++.. +.+++-|||||+|..-+
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~~aGfDgVEih~ah 173 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAA-LRARDAGFDIVYVYAAH 173 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 001000 2345666544 45566799999998754
No 68
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=66.42 E-value=44 Score=29.66 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=39.3
Q ss_pred HHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC----C-------cchhhHHHH
Q 041217 84 VKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK----S-------TNMTNLGIL 152 (383)
Q Consensus 84 lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~----~-------~~~~~~~~l 152 (383)
......+..++++|+|.+ + +.|++ .++.+++.|||||+|+.-.|.. + .+.....++
T Consensus 48 ~~~~~~~~p~~~qi~g~~---------~---~~~~~-aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~ei 114 (231)
T cd02801 48 LTRNPEERPLIVQLGGSD---------P---ETLAE-AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEI 114 (231)
T ss_pred hccCccCCCEEEEEcCCC---------H---HHHHH-HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHH
Confidence 334566789999998852 2 34543 3445556799999999765532 0 133344566
Q ss_pred HHHHHHHH
Q 041217 153 FDEWRAEV 160 (383)
Q Consensus 153 l~~l~~~l 160 (383)
++++++..
T Consensus 115 i~~v~~~~ 122 (231)
T cd02801 115 VRAVREAV 122 (231)
T ss_pred HHHHHHhc
Confidence 66666554
No 69
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.37 E-value=31 Score=33.00 Aligned_cols=66 Identities=11% Similarity=0.204 Sum_probs=38.6
Q ss_pred CcchhhHHHHHHHHHhcCCCceEEEEEecCCc----cch----------------------hhhcC---chhHHHHHHHH
Q 041217 71 STYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA----IFS----------------------SMVNQ---SSNRKSFIESS 121 (383)
Q Consensus 71 ~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~----~~~----------------------~~~~~---~~~r~~f~~~i 121 (383)
|..-..++++.+.+|+. |.|+++-|...+. .+. ..++. .+..+.|++..
T Consensus 78 d~~i~~~~~l~~~vh~~--G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA 155 (338)
T cd04733 78 GEDLEAFREWAAAAKAN--GALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAA 155 (338)
T ss_pred HHHHHHHHHHHHHHHhc--CCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHH
Confidence 33455678888888877 7788877643111 000 00000 01335566544
Q ss_pred HHHHHHcCCCeEEEeccC
Q 041217 122 IETARLYGFQGLDLSGVL 139 (383)
Q Consensus 122 ~~~l~~~~~DGidiD~e~ 139 (383)
+.+++.|||||+|..-+
T Consensus 156 -~ra~~aGfDgVeih~a~ 172 (338)
T cd04733 156 -RLAQEAGFDGVQIHAAH 172 (338)
T ss_pred -HHHHHcCCCEEEEchhh
Confidence 45677899999998653
No 70
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.21 E-value=37 Score=32.85 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=17.6
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEE
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSI 97 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsi 97 (383)
.-..++++++.+|++ +.|+++-|
T Consensus 76 ~i~~~~~l~d~vh~~--Ga~i~~QL 98 (361)
T cd04747 76 ALAGWKKVVDEVHAA--GGKIAPQL 98 (361)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEec
Confidence 455678888888877 78888887
No 71
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=66.20 E-value=15 Score=37.69 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEEec-c-------CCCCC--cchhhHHHHHHHHHHHHH
Q 041217 110 QSSNRKSFIESSIETARLYGFQGLDLSG-V-------LPSKS--TNMTNLGILFDEWRAEVT 161 (383)
Q Consensus 110 ~~~~r~~f~~~i~~~l~~~~~DGidiD~-e-------~~~~~--~~~~~~~~ll~~l~~~l~ 161 (383)
|+.=|+-+++++.+.++..||||+.||= - +.+.+ .-...|..||+++++++.
T Consensus 239 N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~ 300 (559)
T PF13199_consen 239 NPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALP 300 (559)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCC
Confidence 3445677889999999999999999982 1 11221 225689999999999984
No 72
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=65.09 E-value=62 Score=30.14 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=37.4
Q ss_pred CCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCC-------cchhhHHHHHHHHHHHH
Q 041217 89 PSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKS-------TNMTNLGILFDEWRAEV 160 (383)
Q Consensus 89 p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~-------~~~~~~~~ll~~l~~~l 160 (383)
.+.+++++|+|.. .+.|+ .+++.+++.|+|+|+|++-.|... .+.+...++++++|+..
T Consensus 88 ~~~p~ivsi~g~~------------~~~~~-~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~ 153 (296)
T cd04740 88 FGTPVIASIAGST------------VEEFV-EVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT 153 (296)
T ss_pred CCCcEEEEEecCC------------HHHHH-HHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc
Confidence 4678999998842 24555 455566778999999998766431 12233445555555543
No 73
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.96 E-value=37 Score=32.16 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=25.9
Q ss_pred CcEEEEEEEEEeCCCcE----E-EeCCcchhhHHHHHHHHHhcCCCceEEEEE
Q 041217 50 FTHLTCAFAYLNSSTFT----L-YINSTYEKSFSSFTNTVKRKNPSVVTLLSI 97 (383)
Q Consensus 50 ~thii~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lk~~~p~~kvllsi 97 (383)
+--|+.....+.+.+.. + -+.+.....++++++.+|+. +.|+++-|
T Consensus 47 ~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql 97 (327)
T cd02803 47 VGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQL 97 (327)
T ss_pred CcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHh
Confidence 34455555556555411 1 12333455678888888876 66776555
No 74
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=63.14 E-value=5.4 Score=30.57 Aligned_cols=8 Identities=50% Similarity=0.791 Sum_probs=6.0
Q ss_pred CchhhHHH
Q 041217 1 MACKTMIL 8 (383)
Q Consensus 1 M~~~~~~~ 8 (383)
|++|++++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 99997554
No 75
>PLN02877 alpha-amylase/limit dextrinase
Probab=61.28 E-value=47 Score=36.42 Aligned_cols=80 Identities=10% Similarity=0.158 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhcCCCceEEEEE-------ec-CC--ccchh------------------------hhcCchhHHHHHHHH
Q 041217 76 SFSSFTNTVKRKNPSVVTLLSI-------RG-GT--AIFSS------------------------MVNQSSNRKSFIESS 121 (383)
Q Consensus 76 ~~~~~~~~lk~~~p~~kvllsi-------gg-~~--~~~~~------------------------~~~~~~~r~~f~~~i 121 (383)
.++++++.++++ |++|++-+ +| +. ..+.. ..+++--|+-+++++
T Consensus 467 efk~mV~~lH~~--GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl 544 (970)
T PLN02877 467 EFRKMVQALNRI--GLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDL 544 (970)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHH
Confidence 478888888776 99999876 11 11 00100 011233456678999
Q ss_pred HHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHH
Q 041217 122 IETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWR 157 (383)
Q Consensus 122 ~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~ 157 (383)
.-|+++|++||.-||.-............+.|++|.
T Consensus 545 ~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~ 580 (970)
T PLN02877 545 LNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLT 580 (970)
T ss_pred HHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHh
Confidence 999999999999999875443233333333344443
No 76
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=60.91 E-value=95 Score=29.07 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=42.1
Q ss_pred HHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCC----------cchhhHH
Q 041217 81 TNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKS----------TNMTNLG 150 (383)
Q Consensus 81 ~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~----------~~~~~~~ 150 (383)
+..+++..++..+++++.|.. ..+.|++ +++.+++.++|+|+|++-.|... .+.+.+.
T Consensus 90 ~~~~~~~~~~~p~i~si~G~~-----------~~~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~ 157 (299)
T cd02940 90 IRELKKDFPDKILIASIMCEY-----------NKEDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVE 157 (299)
T ss_pred HHHHHhhCCCCeEEEEecCCC-----------CHHHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHH
Confidence 334555444667888887740 1144553 44566777899999999877531 3345566
Q ss_pred HHHHHHHHHH
Q 041217 151 ILFDEWRAEV 160 (383)
Q Consensus 151 ~ll~~l~~~l 160 (383)
++++.+++..
T Consensus 158 ~iv~~v~~~~ 167 (299)
T cd02940 158 EICRWVREAV 167 (299)
T ss_pred HHHHHHHHhc
Confidence 6666666643
No 77
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=60.36 E-value=78 Score=29.61 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=36.5
Q ss_pred CceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcC-CCeEEEeccCCCCC-------cchhhHHHHHHHHHHHH
Q 041217 90 SVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYG-FQGLDLSGVLPSKS-------TNMTNLGILFDEWRAEV 160 (383)
Q Consensus 90 ~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~e~~~~~-------~~~~~~~~ll~~l~~~l 160 (383)
+..++++|+|.+ .+.|++ +++.++++| +|||+|+.--|..+ .+.+...++++++|+..
T Consensus 91 ~~p~i~si~g~~------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~ 156 (301)
T PRK07259 91 DTPIIANVAGST------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV 156 (301)
T ss_pred CCcEEEEeccCC------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc
Confidence 578999998842 245654 455568888 99999988544321 22344455566665544
No 78
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=60.18 E-value=27 Score=37.99 Aligned_cols=80 Identities=11% Similarity=0.206 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHhcCCCceEEEEE-------ecCCc--cch------------------------hhhcCchhHHHHHHHH
Q 041217 75 KSFSSFTNTVKRKNPSVVTLLSI-------RGGTA--IFS------------------------SMVNQSSNRKSFIESS 121 (383)
Q Consensus 75 ~~~~~~~~~lk~~~p~~kvllsi-------gg~~~--~~~------------------------~~~~~~~~r~~f~~~i 121 (383)
..++++++.++++ |++|++-+ +|... .+. ...+++.-|+-+++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 3578888888876 99999766 11100 000 0123455677888999
Q ss_pred HHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHH
Q 041217 122 IETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 122 ~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
.-|+++|++||+-||.-.-.. ..+++++++++++.
T Consensus 482 ~~W~~ey~VDGFRfDlm~~~~-------~~f~~~~~~~l~~i 516 (898)
T TIGR02103 482 VVWAKDYKVDGFRFDLMGHHP-------KAQMLAAREAIKAL 516 (898)
T ss_pred HHHHHHcCCCEEEEechhhCC-------HHHHHHHHHHHHHh
Confidence 999999999999999763322 45778888877765
No 79
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=60.10 E-value=31 Score=28.09 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHhcCCCceEEEEEecCCccchhhhc-CchhHHHHHHHHHHHHHHcCCCeEEE
Q 041217 75 KSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVN-QSSNRKSFIESSIETARLYGFQGLDL 135 (383)
Q Consensus 75 ~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidi 135 (383)
..+.-+++.+|+. |+++++-|---.+.|-.-.. +.+.|+.+.+.|...++++||.=+|+
T Consensus 36 ~Dl~l~L~~~k~~--g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 36 DDLQLLLDVCKEL--GIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHHc--CCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 3456677778877 89999887665554444443 56899999999999999999955555
No 80
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=58.10 E-value=95 Score=29.35 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=29.3
Q ss_pred HhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCC
Q 041217 85 KRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPS 141 (383)
Q Consensus 85 k~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 141 (383)
+....+..+.+.|+|.+ + +.|++ .++.+++.|+|||||+.--|.
T Consensus 57 ~~~~~~~p~i~ql~g~~---------~---~~~~~-aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 57 DIAEDETPISVQLFGSD---------P---DTMAE-AAKINEELGADIIDINMGCPV 100 (319)
T ss_pred hcCCccceEEEEEeCCC---------H---HHHHH-HHHHHHhCCCCEEEEECCCCH
Confidence 33444667889998852 2 33443 444667789999999987553
No 81
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=57.85 E-value=56 Score=31.81 Aligned_cols=87 Identities=10% Similarity=0.107 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhcCCCceEEEEEecCCc-------------cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCC
Q 041217 75 KSFSSFTNTVKRKNPSVVTLLSIRGGTA-------------IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPS 141 (383)
Q Consensus 75 ~~~~~~~~~lk~~~p~~kvllsigg~~~-------------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 141 (383)
..-+.|++..|++ |+..++++..... .-..-+ .++..+.|+.=+++.++.+.=.||.|++-.|.
T Consensus 104 ~gQrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~ 180 (384)
T PF14587_consen 104 AGQRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVVKHYKKWGINFDYISPF 180 (384)
T ss_dssp HHHHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHHHHHHCTT--EEEEE--
T ss_pred HHHHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHHHHHHhcCCccceeCCc
Confidence 3345566666665 8888887755222 001112 24678999999998888887789999763332
Q ss_pred --------------CCcchhhHHHHHHHHHHHHHHHh
Q 041217 142 --------------KSTNMTNLGILFDEWRAEVTSEA 164 (383)
Q Consensus 142 --------------~~~~~~~~~~ll~~l~~~l~~~~ 164 (383)
.+-+.+....+++.|+.+|.+.|
T Consensus 181 NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~G 217 (384)
T PF14587_consen 181 NEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRG 217 (384)
T ss_dssp S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 12345667899999999999875
No 82
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=57.79 E-value=86 Score=29.60 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=47.4
Q ss_pred eCCcchhhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcC-CCeEEEeccCCCCC----
Q 041217 69 INSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYG-FQGLDLSGVLPSKS---- 143 (383)
Q Consensus 69 ~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~e~~~~~---- 143 (383)
+++.....+.+.+..+++..++..+++||.|.+. +.+. .+++.+++.+ .|.|+|++--|..+
T Consensus 71 l~n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~------------~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~ 137 (310)
T PRK02506 71 LPNLGFDYYLDYVLELQKKGPNKPHFLSVVGLSP------------EETH-TILKKIQASDFNGLVELNLSCPNVPGKPQ 137 (310)
T ss_pred CCCcCHHHHHHHHHHHHhhcCCCCEEEEEEeCcH------------HHHH-HHHHHHhhcCCCCEEEEECCCCCCCCccc
Confidence 4444444444444455555456888999877532 2332 3344566777 79999999866331
Q ss_pred --cchhhHHHHHHHHHHHH
Q 041217 144 --TNMTNLGILFDEWRAEV 160 (383)
Q Consensus 144 --~~~~~~~~ll~~l~~~l 160 (383)
.+.+.+.++++.+++..
T Consensus 138 ~g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 138 IAYDFETTEQILEEVFTYF 156 (310)
T ss_pred cccCHHHHHHHHHHHHHhc
Confidence 23455667777777654
No 83
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=57.65 E-value=91 Score=30.79 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=41.7
Q ss_pred HHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCC----------cchhhHHHH
Q 041217 83 TVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKS----------TNMTNLGIL 152 (383)
Q Consensus 83 ~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~----------~~~~~~~~l 152 (383)
.+++..+...++++|.|.. ..+.++ ..++.+++.++|+|+|++-.|... .+.+.+.++
T Consensus 92 ~~~~~~~~~p~i~si~g~~-----------~~~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i 159 (420)
T PRK08318 92 RVKRDYPDRALIASIMVEC-----------NEEEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMY 159 (420)
T ss_pred HHHhhCCCceEEEEeccCC-----------CHHHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHH
Confidence 4555445567889997741 113333 455566778899999999877521 344566667
Q ss_pred HHHHHHHH
Q 041217 153 FDEWRAEV 160 (383)
Q Consensus 153 l~~l~~~l 160 (383)
++.+++..
T Consensus 160 ~~~v~~~~ 167 (420)
T PRK08318 160 TRWVKRGS 167 (420)
T ss_pred HHHHHhcc
Confidence 77776653
No 84
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=56.28 E-value=53 Score=28.90 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=47.3
Q ss_pred cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCC
Q 041217 103 IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLP 182 (383)
Q Consensus 103 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 182 (383)
....|+.++. +++ +.+.+.|.|-|-+.+|-. .....+++.+|+. +....+++-+..
T Consensus 61 DvHLMv~~P~---~~i----~~~~~~g~~~i~~H~E~~------~~~~~~i~~ik~~-----------g~k~GialnP~T 116 (201)
T PF00834_consen 61 DVHLMVENPE---RYI----EEFAEAGADYITFHAEAT------EDPKETIKYIKEA-----------GIKAGIALNPET 116 (201)
T ss_dssp EEEEESSSGG---GHH----HHHHHHT-SEEEEEGGGT------TTHHHHHHHHHHT-----------TSEEEEEE-TTS
T ss_pred EEEeeeccHH---HHH----HHHHhcCCCEEEEcccch------hCHHHHHHHHHHh-----------CCCEEEEEECCC
Confidence 3466777773 344 445666999999999922 2344667766663 345667775433
Q ss_pred ccccCCCChhhhhccccEEEeeecc
Q 041217 183 AIDSVTYPIDSMLRNLDWVHVRAYD 207 (383)
Q Consensus 183 ~~~~~~~~~~~l~~~vD~v~lm~yd 207 (383)
... .+..+.+.+|+|.+|+-+
T Consensus 117 ~~~----~~~~~l~~vD~VlvMsV~ 137 (201)
T PF00834_consen 117 PVE----ELEPYLDQVDMVLVMSVE 137 (201)
T ss_dssp -GG----GGTTTGCCSSEEEEESS-
T ss_pred Cch----HHHHHhhhcCEEEEEEec
Confidence 321 246777889999999975
No 85
>PLN03244 alpha-amylase; Provisional
Probab=55.86 E-value=1.3e+02 Score=32.39 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=44.1
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEec----------------CCc------------cch---hhhcCchhHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRG----------------GTA------------IFS---SMVNQSSNRKSFIESS 121 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg----------------~~~------------~~~---~~~~~~~~r~~f~~~i 121 (383)
....++.|++.++++ |++|++-+-- ... .|. --..+++-|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 456689999988887 8999987621 000 011 0112356777788999
Q ss_pred HHHHHHcCCCeEEEe
Q 041217 122 IETARLYGFQGLDLS 136 (383)
Q Consensus 122 ~~~l~~~~~DGidiD 136 (383)
.-|+++|++||+-+|
T Consensus 517 ~yWleEyhIDGFRfD 531 (872)
T PLN03244 517 NWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHhCcCcceee
Confidence 999999999999998
No 86
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=55.52 E-value=97 Score=29.55 Aligned_cols=77 Identities=9% Similarity=0.123 Sum_probs=44.9
Q ss_pred CCcchhhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcc----
Q 041217 70 NSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTN---- 145 (383)
Q Consensus 70 ~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~---- 145 (383)
++.....+.+.+..++++. ++.++++|+|.+ . +.++ .+++.+++.|+|+|+|++-.|....+
T Consensus 82 ~n~g~d~~~~~i~~~~~~~-~~pvi~sI~g~~---------~---~e~~-~~a~~~~~agad~ielN~scpp~~~~~~g~ 147 (334)
T PRK07565 82 FYVGPEEYLELIRRAKEAV-DIPVIASLNGSS---------A---GGWV-DYARQIEQAGADALELNIYYLPTDPDISGA 147 (334)
T ss_pred cCcCHHHHHHHHHHHHHhc-CCcEEEEeccCC---------H---HHHH-HHHHHHHHcCCCEEEEeCCCCCCCCCCccc
Confidence 3444455555554455433 688999998842 1 2333 45556677799999999865322111
Q ss_pred --hhhHHHHHHHHHHHH
Q 041217 146 --MTNLGILFDEWRAEV 160 (383)
Q Consensus 146 --~~~~~~ll~~l~~~l 160 (383)
.+.+.++++++++..
T Consensus 148 ~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 148 EVEQRYLDILRAVKSAV 164 (334)
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 123556666666654
No 87
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=54.66 E-value=83 Score=33.44 Aligned_cols=89 Identities=10% Similarity=0.143 Sum_probs=57.8
Q ss_pred hhhHHHHHHHHHhcCCCceEE---EEEec-CCc-----cc--h-----------------h-----------hhcCchhH
Q 041217 74 EKSFSSFTNTVKRKNPSVVTL---LSIRG-GTA-----IF--S-----------------S-----------MVNQSSNR 114 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvl---lsigg-~~~-----~~--~-----------------~-----------~~~~~~~r 114 (383)
...++.+++.+|+++|++|-+ .++-| |++ .. . . -+-+++..
T Consensus 287 ~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p~~~ 366 (747)
T PF05691_consen 287 PSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDPEDA 366 (747)
T ss_pred cccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCHHHH
Confidence 456888999999999988744 55544 444 00 0 0 02356777
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeccCCCCC--cchhhHHHHHHHHHHHHHH
Q 041217 115 KSFIESSIETARLYGFQGLDLSGVLPSKS--TNMTNLGILFDEWRAEVTS 162 (383)
Q Consensus 115 ~~f~~~i~~~l~~~~~DGidiD~e~~~~~--~~~~~~~~ll~~l~~~l~~ 162 (383)
.+|-+..-++|++-|+|||-+|-+..... .....-.++.+...+++.+
T Consensus 367 ~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~ 416 (747)
T PF05691_consen 367 FRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEA 416 (747)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHH
Confidence 89999999999999999999998754320 1111224555555555544
No 88
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=54.50 E-value=25 Score=28.06 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 041217 117 FIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEA 164 (383)
Q Consensus 117 f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~ 164 (383)
=.+.+.++|++.|+++--+++.+.+. .+.+.|+..++++-+++++.|
T Consensus 79 R~~~lke~l~elgie~eRv~~~wiSa-~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 79 RMELLKELLKELGIEPERVRVLWISA-AEGEKFAETINEFVERIKELG 125 (132)
T ss_pred HHHHHHHHHHHhCCCcceEEEEEEeh-hhHHHHHHHHHHHHHHHHHhC
Confidence 34577888999999888888887766 889999999999999998765
No 89
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.54 E-value=59 Score=30.53 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=27.2
Q ss_pred hcCchhHHHHHHHHHHHHHHcCCCeEEEeccCC
Q 041217 108 VNQSSNRKSFIESSIETARLYGFQGLDLSGVLP 140 (383)
Q Consensus 108 ~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~ 140 (383)
..|++.|+=+.+.+.+++.+.|+||+=+|+..|
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 357788888888888888899999999999544
No 90
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=52.85 E-value=83 Score=29.80 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=48.8
Q ss_pred EEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecC------------------------------Cc--cchhhhcCchh
Q 041217 66 TLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGG------------------------------TA--IFSSMVNQSSN 113 (383)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~------------------------------~~--~~~~~~~~~~~ 113 (383)
...+..+.-...+++++.||++ |+|+++.+--. .. .+-. +.+++.
T Consensus 57 ~f~~d~~~FPdp~~mi~~L~~~--G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~D-ftnp~a 133 (319)
T cd06591 57 EWKFDPERFPDPKAMVRELHEM--NAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYD-ATNPEA 133 (319)
T ss_pred eEEEChhhCCCHHHHHHHHHHC--CCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccC-CCCHHH
Confidence 4555544444567788888877 88988766110 00 1122 246778
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeccCC
Q 041217 114 RKSFIESSIETARLYGFQGLDLSGVLP 140 (383)
Q Consensus 114 r~~f~~~i~~~l~~~~~DGidiD~e~~ 140 (383)
|+-+.+.+.+.+.+.|+||+=+|...|
T Consensus 134 ~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 134 REYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 888888888889899999999998544
No 91
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=52.13 E-value=52 Score=29.39 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=69.5
Q ss_pred HHHHHHHHHhc-----CCCceEEEEEecCCccchhhhc-CchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHH
Q 041217 77 FSSFTNTVKRK-----NPSVVTLLSIRGGTAIFSSMVN-QSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLG 150 (383)
Q Consensus 77 ~~~~~~~lk~~-----~p~~kvllsigg~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~ 150 (383)
+.+.+++++.+ .++-+..+=|.=.+ .+..++. |.+....++..+.+... ...+-.|.|....+++.-.
T Consensus 49 L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYG-tiG~~f~~d~~~~adYl~~l~~aA~-----P~~L~iEgP~d~g~r~~QI 122 (248)
T PF07476_consen 49 LLEYVKWLKDRIRELGDEDYRPVLHIDVYG-TIGLAFDNDPDRMADYLAELEEAAA-----PFKLRIEGPMDAGSREAQI 122 (248)
T ss_dssp HHHHHHHHHHHHHHHSSTT---EEEEE-TT-HHHHHTTT-HHHHHHHHHHHHHHHT-----TS-EEEE-SB--SSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCccEEEEccc-hHHHHhCCCHHHHHHHHHHHHHhcC-----CCeeeeeCCcCCCChHHHH
Confidence 44555555543 33444444332221 2334443 34444555555555444 3567889998888999999
Q ss_pred HHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhh--hccccEEEeeeccCCCCCCCCCCCCCCCCCCCCC
Q 041217 151 ILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSM--LRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSSS 228 (383)
Q Consensus 151 ~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l--~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~ 228 (383)
..+++||+.+++.| ..+-+.. ..++.. --|+... .+.+|.|.|.|=|+.|-.
T Consensus 123 ~~l~~Lr~~L~~~g-------~~v~iVA--DEWCNT-~eDI~~F~da~A~dmVQIKtPDLGgi~---------------- 176 (248)
T PF07476_consen 123 EALAELREELDRRG-------INVEIVA--DEWCNT-LEDIREFADAKAADMVQIKTPDLGGIN---------------- 176 (248)
T ss_dssp HHHHHHHHHHHHCT---------EEEEE---TT--S-HHHHHHHHHTT-SSEEEE-GGGGSSTH----------------
T ss_pred HHHHHHHHHHHhcC-------CCCeEEe--ehhcCC-HHHHHHHHhcCCcCEEEecCCCccchh----------------
Confidence 99999999999754 2232222 233322 1234443 346899999999986541
Q ss_pred CCcHHHHHHHHHHcCC
Q 041217 229 WFNTNDSIREWLKTGF 244 (383)
Q Consensus 229 ~~~~~~~~~~~~~~gv 244 (383)
++.+++.+-.+.|+
T Consensus 177 --ntieAvlyCk~~gv 190 (248)
T PF07476_consen 177 --NTIEAVLYCKEHGV 190 (248)
T ss_dssp --HHHHHHHHHHHTT-
T ss_pred --hHHHHHHHHHhcCC
Confidence 55666666666553
No 92
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=51.99 E-value=2e+02 Score=27.18 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=28.0
Q ss_pred cCchhHHHHHHHHHHHHHHcCCCeEEEeccCCC
Q 041217 109 NQSSNRKSFIESSIETARLYGFQGLDLSGVLPS 141 (383)
Q Consensus 109 ~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 141 (383)
.|++.|+-+.+.+.+++.+.|+||+=+|+..|.
T Consensus 130 tnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 130 TNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 578888988888888888999999999996554
No 93
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=50.45 E-value=1.7e+02 Score=30.88 Aligned_cols=48 Identities=8% Similarity=-0.039 Sum_probs=36.8
Q ss_pred EEEEeCCH----HHHHHHHHHHHHcCCcEEEEEecCCCCChhHHHHHHHhhc
Q 041217 319 NWINFDGA----EAITAKVSFAKEKGLLGYNAFQLSNDDKWELSLAGMQLLI 366 (383)
Q Consensus 319 ~~i~ydd~----~S~~~K~~~~~~~glgGv~iW~l~~Dd~~~l~~~~~~~l~ 366 (383)
..|+.+|+ +.+...++-+++.|+-=|.+-...--|-.+++.+.++|..
T Consensus 322 d~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~ 373 (671)
T PRK14582 322 DYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNR 373 (671)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcc
Confidence 34555776 6888889999999998888877766667777888887764
No 94
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=49.38 E-value=9.5 Score=30.08 Aligned_cols=19 Identities=32% Similarity=0.674 Sum_probs=14.5
Q ss_pred HHHHHHHcCCCCCcEEEec
Q 041217 235 SIREWLKTGFPANKLVLGL 253 (383)
Q Consensus 235 ~~~~~~~~gvp~~Kivlgl 253 (383)
..+.++.+|||++.||||+
T Consensus 79 Ia~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 79 IAEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHHHTT--GGGEEETT
T ss_pred HHHHHHHcCCCHHHEEEcc
Confidence 3467889999999999997
No 95
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=49.09 E-value=50 Score=31.28 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=50.6
Q ss_pred CceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC-----------CcchhhHHHHHHHHHH
Q 041217 90 SVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK-----------STNMTNLGILFDEWRA 158 (383)
Q Consensus 90 ~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----------~~~~~~~~~ll~~l~~ 158 (383)
+..+.+.|.|. |+ +.|++.+. .+.+.|+|||||+.--|.. -.+.+...++++++++
T Consensus 62 e~p~~vQl~g~---------~p---~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~ 128 (312)
T PRK10550 62 GTLVRIQLLGQ---------YP---QWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMRE 128 (312)
T ss_pred CCcEEEEeccC---------CH---HHHHHHHH-HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHH
Confidence 35677888774 23 44554443 4466799999999877652 1233445566666666
Q ss_pred HHHHHhhccCCcceEEEEEecCCCccccCCCChhhhhc-c-ccEEEee
Q 041217 159 EVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLR-N-LDWVHVR 204 (383)
Q Consensus 159 ~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~-~-vD~v~lm 204 (383)
++.. ++-+|+-+...........++..+.+ . +|.+.|-
T Consensus 129 ~~~~--------~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 129 AVPA--------HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred hcCC--------CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 5421 23466655432211111122333332 2 7888774
No 96
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=47.29 E-value=81 Score=30.71 Aligned_cols=110 Identities=10% Similarity=0.012 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCCCceEEEEEecCCc-----------------cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEE-ec
Q 041217 76 SFSSFTNTVKRKNPSVVTLLSIRGGTA-----------------IFSSMVNQSSNRKSFIESSIETARLYGFQGLDL-SG 137 (383)
Q Consensus 76 ~~~~~~~~lk~~~p~~kvllsigg~~~-----------------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi-D~ 137 (383)
.-..+++.+|++.|++++. .+||..- .|..++..--.-.+..+.+++.+++..-|-+.+ |+
T Consensus 13 ~ga~Li~~Lk~~~p~~~~~-GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlID~ 91 (373)
T PF02684_consen 13 HGARLIRALKARDPDIEFY-GVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVILIDY 91 (373)
T ss_pred HHHHHHHHHHhhCCCcEEE-EEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3456788999999998866 8888311 455556555555777889999999999997654 43
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhhccccEEEee
Q 041217 138 VLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVR 204 (383)
Q Consensus 138 e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm 204 (383)
- +- + ..+.+.+|+.-. +...+ --++|.-+-|. ....+.|.+++|.+-..
T Consensus 92 p--gF--N----lrlak~lk~~~~--------~~~vi-yYI~PqvWAWr-~~R~~~i~~~~D~ll~i 140 (373)
T PF02684_consen 92 P--GF--N----LRLAKKLKKRGI--------PIKVI-YYISPQVWAWR-PGRAKKIKKYVDHLLVI 140 (373)
T ss_pred C--Cc--c----HHHHHHHHHhCC--------CceEE-EEECCceeeeC-ccHHHHHHHHHhheeEC
Confidence 2 21 0 346666665421 11123 33444444443 34578999999997543
No 97
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=47.18 E-value=61 Score=33.75 Aligned_cols=63 Identities=11% Similarity=0.274 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEE--e-------------c------------CCccchhhhc---CchhHHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSI--R-------------G------------GTAIFSSMVN---QSSNRKSFIESSI 122 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsi--g-------------g------------~~~~~~~~~~---~~~~r~~f~~~i~ 122 (383)
.+..++.|++.++++ |+-|+|-+ + | +...|....- ..+-|.=|+.++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 577899999999988 89999876 1 1 0002333332 3466777889999
Q ss_pred HHHHHcCCCeEEEec
Q 041217 123 ETARLYGFQGLDLSG 137 (383)
Q Consensus 123 ~~l~~~~~DGidiD~ 137 (383)
-|+++|.+||+-+|-
T Consensus 290 ~Wl~~yHiDGlRvDA 304 (628)
T COG0296 290 YWLEEYHIDGLRVDA 304 (628)
T ss_pred HHHHHhCCcceeeeh
Confidence 999999999998874
No 98
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.66 E-value=1.6e+02 Score=27.52 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=45.0
Q ss_pred eCCcchhhHHHHHHHHHhc--CCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHc--CCCeEEEeccCCCCC-
Q 041217 69 INSTYEKSFSSFTNTVKRK--NPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLY--GFQGLDLSGVLPSKS- 143 (383)
Q Consensus 69 ~~~~~~~~~~~~~~~lk~~--~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~--~~DGidiD~e~~~~~- 143 (383)
+++.....+.+.++..++. .++..++++|+|. .+.+++.+.++.+.. +.|+|||++--|..+
T Consensus 68 ~~n~g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-------------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~ 134 (294)
T cd04741 68 LPNLGLDYYLEYIRTISDGLPGSAKPFFISVTGS-------------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPG 134 (294)
T ss_pred CCCcCHHHHHHHHHHHhhhccccCCeEEEECCCC-------------HHHHHHHHHHHHhhccccccEEEEECCCCCCCC
Confidence 3344444444443334432 2467788999773 234444444433333 689999999866531
Q ss_pred -----cchhhHHHHHHHHHHHH
Q 041217 144 -----TNMTNLGILFDEWRAEV 160 (383)
Q Consensus 144 -----~~~~~~~~ll~~l~~~l 160 (383)
.+.+.+.++++.+++..
T Consensus 135 ~~~~~~~~~~~~~i~~~v~~~~ 156 (294)
T cd04741 135 KPPPAYDFDATLEYLTAVKAAY 156 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhc
Confidence 24556667777777665
No 99
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=46.27 E-value=1.1e+02 Score=29.33 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=27.1
Q ss_pred hcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCC
Q 041217 108 VNQSSNRKSFIESSIETARLYGFQGLDLSGVLPS 141 (383)
Q Consensus 108 ~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 141 (383)
+.|++.|+=+.+.+.+++.+.|+||+=+|+..|.
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 3567778877777777888899999999996554
No 100
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=45.53 E-value=64 Score=31.48 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEE
Q 041217 74 EKSFSSFTNTVKRKNPSVVTLLSI 97 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvllsi 97 (383)
-..++++.+.+|++ +.++++-|
T Consensus 82 i~~~k~l~davh~~--G~~i~~QL 103 (382)
T cd02931 82 IRTAKEMTERVHAY--GTKIFLQL 103 (382)
T ss_pred hHHHHHHHHHHHHc--CCEEEEEc
Confidence 35678888888877 78999887
No 101
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=44.71 E-value=1.3e+02 Score=27.88 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEEecCCc-cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHH
Q 041217 74 EKSFSSFTNTVKRKNPSVVTLLSIRGGTA-IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGIL 152 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvllsigg~~~-~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l 152 (383)
...++++++..|++ |++|++-.--.+. .... ..++ .+.+.+.+++.|..||-+||-. .+.+..+.+
T Consensus 72 ~~dl~elv~Ya~~K--gVgi~lw~~~~~~~~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~~----~d~Q~~v~~ 138 (273)
T PF10566_consen 72 DFDLPELVDYAKEK--GVGIWLWYHSETGGNVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFMD----RDDQEMVNW 138 (273)
T ss_dssp T--HHHHHHHHHHT--T-EEEEEEECCHTTBHHH------HHCC-HHHHHHHHHHCTEEEEEEE--S----STSHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCCEEEEEeCCcchhhHh------HHHH-HHHHHHHHHHcCCCEEeeCcCC----CCCHHHHHH
Confidence 34578899888888 7888876633221 2222 1122 3788899999999999999963 344555566
Q ss_pred HHHHHHHH
Q 041217 153 FDEWRAEV 160 (383)
Q Consensus 153 l~~l~~~l 160 (383)
.+++-+..
T Consensus 139 y~~i~~~A 146 (273)
T PF10566_consen 139 YEDILEDA 146 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65554443
No 102
>PRK03995 hypothetical protein; Provisional
Probab=44.24 E-value=68 Score=29.63 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=52.4
Q ss_pred EEEEeCCCcEEEeCCcchh--hHHHHHHHHHh-cCCCceEEEEEecCCc--cchhhhc-----------CchhHHHHH-H
Q 041217 57 FAYLNSSTFTLYINSTYEK--SFSSFTNTVKR-KNPSVVTLLSIRGGTA--IFSSMVN-----------QSSNRKSFI-E 119 (383)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~lk~-~~p~~kvllsigg~~~--~~~~~~~-----------~~~~r~~f~-~ 119 (383)
|+++... .-.|.|+... ..+.+++.+.. .....++++.|||.-. .+..++. +-.. ..+- .
T Consensus 146 FvEIGSt--e~eW~d~~a~~~vA~avl~~l~~~~~~~~~~~iGiGGgHYapr~T~~~l~~~~~~GHi~pky~l-~~~~~~ 222 (267)
T PRK03995 146 FVEIGST--EEEWKNERAGEILAEAVIEVLDSIEYEKFKPAIGIGGGHYAPKFTKLALESEYCFGHIIPKYAL-DHLSEE 222 (267)
T ss_pred EEEeCCC--HHHhCCcHHHHHHHHHHHHHHhcccccCCCEEEEECCCCccHHHHHHHhhCCeeEEeEccccch-hcCCHH
Confidence 4555543 3345555332 23445544432 3357889999999533 2333332 1111 0011 1
Q ss_pred HHHHHHHHc--CCCeEEEeccCCCCCcchhhHHHHHHHH
Q 041217 120 SSIETARLY--GFQGLDLSGVLPSKSTNMTNLGILFDEW 156 (383)
Q Consensus 120 ~i~~~l~~~--~~DGidiD~e~~~~~~~~~~~~~ll~~l 156 (383)
.+.+.+++. ++|.+-|||....+ .+++.+..+++++
T Consensus 223 ~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~i~~~le~~ 260 (267)
T PRK03995 223 VLIQAIEKSTPEIDRIVIDWKGVKS-EDRERIIEFLEEL 260 (267)
T ss_pred HHHHHHHhccCCCCEEEEecCCCCH-HHHHHHHHHHHHC
Confidence 244555553 68999999986555 6777777777765
No 103
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=44.10 E-value=2.4e+02 Score=26.98 Aligned_cols=84 Identities=11% Similarity=0.016 Sum_probs=50.6
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCc-----------hh-----HHHHHHHHHHHHHHcCCCeEEEe
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQS-----------SN-----RKSFIESSIETARLYGFQGLDLS 136 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~-----------~~-----r~~f~~~i~~~l~~~~~DGidiD 136 (383)
..+..+++.+++|++ |+|+-+-...+.........+. .. .+....++.+++.+|..|.+=+|
T Consensus 136 krDiv~El~~A~rk~--Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 136 KRDIVGELADACRKY--GLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp TS-HHHHHHHHHHHT--T-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CCCHHHHHHHHHHHc--CCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 345577888888888 8999988877543111111111 11 12455788899999999999999
Q ss_pred ccCCCCCcchhhHHHHHHHHHHH
Q 041217 137 GVLPSKSTNMTNLGILFDEWRAE 159 (383)
Q Consensus 137 ~e~~~~~~~~~~~~~ll~~l~~~ 159 (383)
..++.. .+...+..+...+|+.
T Consensus 214 g~~~~~-~~~~~~~~~~~~i~~~ 235 (346)
T PF01120_consen 214 GGWPDP-DEDWDSAELYNWIRKL 235 (346)
T ss_dssp STTSCC-CTHHHHHHHHHHHHHH
T ss_pred CCCCcc-ccccCHHHHHHHHHHh
Confidence 876643 3333445555555443
No 104
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=43.58 E-value=1.3e+02 Score=28.54 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=39.1
Q ss_pred cCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCC-----------cchhhHHHHHHH
Q 041217 87 KNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKS-----------TNMTNLGILFDE 155 (383)
Q Consensus 87 ~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~-----------~~~~~~~~ll~~ 155 (383)
......+.+.|+|. |+ +.|+ ..++.+.++|+|||||+.--|... .+.+...+++++
T Consensus 51 ~~~e~p~~vQl~g~---------~p---~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~a 117 (318)
T TIGR00742 51 SPEESPVALQLGGS---------DP---NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKA 117 (318)
T ss_pred CCCCCcEEEEEccC---------CH---HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHH
Confidence 33456678888875 23 3344 345566778999999999766431 334445677777
Q ss_pred HHHHH
Q 041217 156 WRAEV 160 (383)
Q Consensus 156 l~~~l 160 (383)
++++.
T Consensus 118 v~~~~ 122 (318)
T TIGR00742 118 MQEAV 122 (318)
T ss_pred HHHHh
Confidence 77665
No 105
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=43.34 E-value=1.2e+02 Score=29.84 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEE-----ecCCc------cc----------------hhhhcCchhHHHHHHHHHHHHH
Q 041217 74 EKSFSSFTNTVKRKNPSVVTLLSI-----RGGTA------IF----------------SSMVNQSSNRKSFIESSIETAR 126 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvllsi-----gg~~~------~~----------------~~~~~~~~~r~~f~~~i~~~l~ 126 (383)
+..++.+++.++++ |+|.-|-+ +..+. .| ..=+++++.|+-+.+.+.++++
T Consensus 103 P~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~ 180 (394)
T PF02065_consen 103 PNGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLR 180 (394)
T ss_dssp TTHHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHH
Confidence 44578888888877 77777665 22111 11 1113566778888888999999
Q ss_pred HcCCCeEEEeccCCCC----Ccc---hhhHH----HHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhh
Q 041217 127 LYGFQGLDLSGVLPSK----STN---MTNLG----ILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSML 195 (383)
Q Consensus 127 ~~~~DGidiD~e~~~~----~~~---~~~~~----~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~ 195 (383)
++|+|.|-+|+..... +.. ...+. +++++|++++ +++.+..+... ..+.|+ .+.
T Consensus 181 ~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~---------P~v~iE~CssG-----G~R~D~-g~l 245 (394)
T PF02065_consen 181 EWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARF---------PDVLIENCSSG-----GGRFDP-GML 245 (394)
T ss_dssp HTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHT---------TTSEEEE-BTT-----BTTTSH-HHH
T ss_pred hcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhC---------CCcEEEeccCC-----CCcccc-chh
Confidence 9999999999974322 111 22333 4555555554 46777766432 123564 666
Q ss_pred ccccEE
Q 041217 196 RNLDWV 201 (383)
Q Consensus 196 ~~vD~v 201 (383)
.+.+.+
T Consensus 246 ~~~~~~ 251 (394)
T PF02065_consen 246 YYTPQS 251 (394)
T ss_dssp CCSSEE
T ss_pred eecccc
Confidence 776654
No 106
>PRK00865 glutamate racemase; Provisional
Probab=43.11 E-value=1.5e+02 Score=27.05 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=47.9
Q ss_pred EEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEecc
Q 041217 67 LYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGV 138 (383)
Q Consensus 67 ~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e 138 (383)
+-+.|+.-..+.-+ +.++++.|+..++- +|... .+..--++.+...+++.++++++.+.|.|.|.|-+.
T Consensus 8 IgvfDSGiGGLtvl-~~i~~~lp~~~~iY-~~D~~-~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 8 IGVFDSGVGGLTVL-REIRRLLPDEHIIY-VGDTA-RFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred EEEEECCccHHHHH-HHHHHHCCCCCEEE-EecCC-CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 33445545554444 46888888887764 33322 222223567888899999999999999999999887
No 107
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=42.76 E-value=97 Score=29.59 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=29.1
Q ss_pred cCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCC
Q 041217 87 KNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPS 141 (383)
Q Consensus 87 ~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 141 (383)
......+.+.|+|. |+ +.|++ .++.+++.|+|||||+.--|.
T Consensus 61 ~~~e~p~~vQl~g~---------~p---~~~~~-aA~~~~~~g~d~IdlN~gCP~ 102 (333)
T PRK11815 61 DPEEHPVALQLGGS---------DP---ADLAE-AAKLAEDWGYDEINLNVGCPS 102 (333)
T ss_pred CCCCCcEEEEEeCC---------CH---HHHHH-HHHHHHhcCCCEEEEcCCCCH
Confidence 33356788888885 23 34443 456677889999999987664
No 108
>PRK01060 endonuclease IV; Provisional
Probab=41.36 E-value=52 Score=30.20 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHH
Q 041217 118 IESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 118 ~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
+...++.+++.|||||+|..+.|........-...++++++.+.+.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~ 59 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKY 59 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHc
Confidence 5568899999999999998775543111122234577777777654
No 109
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=40.94 E-value=2.4e+02 Score=26.73 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=41.4
Q ss_pred CcchhhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCC-CCcc----
Q 041217 71 STYEKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPS-KSTN---- 145 (383)
Q Consensus 71 ~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~-~~~~---- 145 (383)
+.....+.+.+..++++ .+..++++|.|.+ .+.|+ .+++.+++.++|+|+|+.-.+. .+..
T Consensus 81 n~g~~~~~~~i~~~~~~-~~~pvi~si~g~~------------~~~~~-~~a~~~~~~gad~iElN~s~~~~~~~~~g~~ 146 (325)
T cd04739 81 NLGPEEYLELIRRAKRA-VSIPVIASLNGVS------------AGGWV-DYARQIEEAGADALELNIYALPTDPDISGAE 146 (325)
T ss_pred CcCHHHHHHHHHHHHhc-cCCeEEEEeCCCC------------HHHHH-HHHHHHHhcCCCEEEEeCCCCCCCCCcccch
Confidence 33333333333334332 3577889997642 13343 5555667778999999996532 2111
Q ss_pred -hhhHHHHHHHHHHHH
Q 041217 146 -MTNLGILFDEWRAEV 160 (383)
Q Consensus 146 -~~~~~~ll~~l~~~l 160 (383)
.+.+.++++.+++..
T Consensus 147 ~~~~~~eiv~~v~~~~ 162 (325)
T cd04739 147 VEQRYLDILRAVKSAV 162 (325)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 133455666666554
No 110
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=40.08 E-value=1.3e+02 Score=32.03 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHhcCCCceE---EEEEec-CCc---cch--------------------------------hhhcCchhHH
Q 041217 75 KSFSSFTNTVKRKNPSVVT---LLSIRG-GTA---IFS--------------------------------SMVNQSSNRK 115 (383)
Q Consensus 75 ~~~~~~~~~lk~~~p~~kv---llsigg-~~~---~~~--------------------------------~~~~~~~~r~ 115 (383)
..++.+++.+|++++++|- +-+|-| |++ .-. .-+-+++...
T Consensus 305 ~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~ 384 (777)
T PLN02711 305 KGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAY 384 (777)
T ss_pred CcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHH
Confidence 4678888899998887764 455533 444 110 0124567778
Q ss_pred HHHHHHHHHHHHcCCCeEEEeccCCCC--CcchhhHHHHHHHHHHHHHH
Q 041217 116 SFIESSIETARLYGFQGLDLSGVLPSK--STNMTNLGILFDEWRAEVTS 162 (383)
Q Consensus 116 ~f~~~i~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~ll~~l~~~l~~ 162 (383)
+|-+..-++|.+.|+|||-+|-+.... ..+...=+++.+...+++.+
T Consensus 385 ~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~ 433 (777)
T PLN02711 385 QMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTA 433 (777)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999764311 01111124455555555554
No 111
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=39.03 E-value=1.6e+02 Score=26.31 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=43.7
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEecCCc-------cchhhh----cCchhHHHHHHHHHHHHHHcCCCeEEE
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRGGTA-------IFSSMV----NQSSNRKSFIESSIETARLYGFQGLDL 135 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg~~~-------~~~~~~----~~~~~r~~f~~~i~~~l~~~~~DGidi 135 (383)
...+++.+++-+|+..|..+|++---+.-. .....+ +..+.-..+++.+++..++-|+++||+
T Consensus 98 y~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl 171 (245)
T KOG3035|consen 98 YKDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL 171 (245)
T ss_pred HHHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH
Confidence 355677888888888888888754333211 111111 234556788999999999999999999
No 112
>PRK14705 glycogen branching enzyme; Provisional
Probab=38.51 E-value=83 Score=35.64 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEec-------CC-----c---------------cchh---hhcCchhHHHHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRG-------GT-----A---------------IFSS---MVNQSSNRKSFIESSI 122 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg-------~~-----~---------------~~~~---~~~~~~~r~~f~~~i~ 122 (383)
....++.|++.++++ |++|++-+=- |. . .|.. -..+++-|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 456789999988887 8999987511 10 0 1111 1245677888889999
Q ss_pred HHHHHcCCCeEEEecc-CC--------------CCCcchh--hHHHHHHHHHHHHHHH
Q 041217 123 ETARLYGFQGLDLSGV-LP--------------SKSTNMT--NLGILFDEWRAEVTSE 163 (383)
Q Consensus 123 ~~l~~~~~DGidiD~e-~~--------------~~~~~~~--~~~~ll~~l~~~l~~~ 163 (383)
-|+++|++||+-+|-- .. .....++ .=..||+++.+.+++.
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~ 948 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKT 948 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 9999999999999862 11 0000111 2368999999998874
No 113
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=38.19 E-value=1.7e+02 Score=28.33 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeccCCCC
Q 041217 115 KSFIESSIETARLYGFQGLDLSGVLPSK 142 (383)
Q Consensus 115 ~~f~~~i~~~l~~~~~DGidiD~e~~~~ 142 (383)
++-++++++..-++|+.-||=-|-|.+.
T Consensus 33 ~~~~~~~i~~aie~GiNyidTA~~Yh~g 60 (391)
T COG1453 33 EENANETIDYAIEHGINYIDTAWPYHGG 60 (391)
T ss_pred HHHHHHHHHHHHHcCCceEeecccccCC
Confidence 5567788888888999999999988654
No 114
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=37.90 E-value=79 Score=28.93 Aligned_cols=24 Identities=13% Similarity=0.412 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCCceEEEEEec
Q 041217 76 SFSSFTNTVKRKNPSVVTLLSIRG 99 (383)
Q Consensus 76 ~~~~~~~~lk~~~p~~kvllsigg 99 (383)
.+..+++.+|+.||.+||+++|.-
T Consensus 153 ~l~~~~~~l~~~nP~~kiilTVSP 176 (251)
T PF08885_consen 153 DLEAIIDLLRSINPDIKIILTVSP 176 (251)
T ss_pred HHHHHHHHHHhhCCCceEEEEecc
Confidence 356677789999999999999976
No 115
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=36.92 E-value=2.9e+02 Score=25.23 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHhcCCCceEE--EEEecCCccchhhhcCchhHHHHHHHHHHHHHH--------cCCCeEEEeccCCCCC
Q 041217 74 EKSFSSFTNTVKRKNPSVVTL--LSIRGGTAIFSSMVNQSSNRKSFIESSIETARL--------YGFQGLDLSGVLPSKS 143 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvl--lsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~--------~~~DGidiD~e~~~~~ 143 (383)
...+...+.+|+ +.+++|++ +..+-....+ ....+.|-++..= +++|||-|| |-|...
T Consensus 52 d~~Y~~~i~~L~-~~~nv~vlGYV~T~Yg~R~~----------~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfD-E~p~~~ 119 (253)
T PF12138_consen 52 DANYAAAIPRLN-SYANVRVLGYVHTSYGSRPL----------SEVKADIDTYASWYGQSEDYGYRVDGIFFD-EAPNDY 119 (253)
T ss_pred CHHHHHHHHHHH-hcCCCcEEEEEEccccCCCH----------HHHHHHHHHHhhccccccCCCcccceEEEe-cCCCcH
Confidence 345666666664 46689988 3332221122 2333444444443 688999999 655442
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 041217 144 TNMTNLGILFDEWRAEVTS 162 (383)
Q Consensus 144 ~~~~~~~~ll~~l~~~l~~ 162 (383)
.....++.|....++
T Consensus 120 ----~~~~y~~~l~~~vk~ 134 (253)
T PF12138_consen 120 ----ANLPYYQNLYNYVKS 134 (253)
T ss_pred ----HHHHHHHHHHHHHHh
Confidence 445556666655554
No 116
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=36.67 E-value=1.5e+02 Score=27.95 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=37.4
Q ss_pred HHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC-----------CcchhhHHH
Q 041217 83 TVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK-----------STNMTNLGI 151 (383)
Q Consensus 83 ~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----------~~~~~~~~~ 151 (383)
.+.......++.+-|+|. |+ ......++.+.+.++|||||+.-=|.. -.+.+....
T Consensus 46 ~~~~~~~~~p~~~Ql~g~---------~~----~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~ 112 (309)
T PF01207_consen 46 LLPFLPNERPLIVQLFGN---------DP----EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAE 112 (309)
T ss_dssp HS-GCC-T-TEEEEEE-S----------H----HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHH
T ss_pred cccccccccceeEEEeec---------cH----HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhH
Confidence 344444456788888885 23 233344556777899999999986652 245667788
Q ss_pred HHHHHHHHHH
Q 041217 152 LFDEWRAEVT 161 (383)
Q Consensus 152 ll~~l~~~l~ 161 (383)
+|+++++.+.
T Consensus 113 iv~~~~~~~~ 122 (309)
T PF01207_consen 113 IVKAVRKAVP 122 (309)
T ss_dssp HHHHHHHH-S
T ss_pred HHHhhhcccc
Confidence 8888888774
No 117
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=36.64 E-value=1.3e+02 Score=29.30 Aligned_cols=109 Identities=9% Similarity=-0.029 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCc-----------------cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEE-ecc
Q 041217 77 FSSFTNTVKRKNPSVVTLLSIRGGTA-----------------IFSSMVNQSSNRKSFIESSIETARLYGFQGLDL-SGV 138 (383)
Q Consensus 77 ~~~~~~~lk~~~p~~kvllsigg~~~-----------------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi-D~e 138 (383)
-..+++.+|++.|+++++ .|||..- .|..++..--.-.+-.+.+++.+....-|.+.. |.
T Consensus 17 Ga~LikaLk~~~~~~efv-GvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i~~~kpD~~i~IDs- 94 (381)
T COG0763 17 GAGLIKALKARYPDVEFV-GVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYILANKPDVLILIDS- 94 (381)
T ss_pred HHHHHHHHHhhCCCeEEE-EeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCC-
Confidence 456788999999988765 8887211 344455444344555677778878888886543 32
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhhccccEEEee
Q 041217 139 LPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVR 204 (383)
Q Consensus 139 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm 204 (383)
|+- =..+.+.+|++... -.++- -+.|+-+-|.. .-...|.+++|++-..
T Consensus 95 -PdF------nl~vak~lrk~~p~--------i~iih-YV~PsVWAWr~-~Ra~~i~~~~D~lLai 143 (381)
T COG0763 95 -PDF------NLRVAKKLRKAGPK--------IKIIH-YVSPSVWAWRP-KRAVKIAKYVDHLLAI 143 (381)
T ss_pred -CCC------chHHHHHHHHhCCC--------CCeEE-EECcceeeech-hhHHHHHHHhhHeeee
Confidence 211 03577778776532 12333 33333444432 2357899999997543
No 118
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=36.58 E-value=2.3e+02 Score=26.95 Aligned_cols=75 Identities=9% Similarity=0.023 Sum_probs=43.6
Q ss_pred HHHHHHhcC-CCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC-----CcchhhHHHHH
Q 041217 80 FTNTVKRKN-PSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK-----STNMTNLGILF 153 (383)
Q Consensus 80 ~~~~lk~~~-p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----~~~~~~~~~ll 153 (383)
+++.+++.. .+..++++|+|.... . -++.-+.|++.+-+ +.. ..|+|++++--|.. .++.+.+.+++
T Consensus 117 ~~~~l~~~~~~~~plivsi~g~~~~--~---~~~~~~d~~~~~~~-~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv 189 (327)
T cd04738 117 VAKRLKKRRPRGGPLGVNIGKNKDT--P---LEDAVEDYVIGVRK-LGP-YADYLVVNVSSPNTPGLRDLQGKEALRELL 189 (327)
T ss_pred HHHHHHHhccCCCeEEEEEeCCCCC--c---ccccHHHHHHHHHH-HHh-hCCEEEEECCCCCCCccccccCHHHHHHHH
Confidence 333444322 467899999885321 0 01222344433333 233 38999999965543 24556777888
Q ss_pred HHHHHHHH
Q 041217 154 DEWRAEVT 161 (383)
Q Consensus 154 ~~l~~~l~ 161 (383)
+++|+...
T Consensus 190 ~av~~~~~ 197 (327)
T cd04738 190 TAVKEERN 197 (327)
T ss_pred HHHHHHHh
Confidence 88888774
No 119
>PRK08005 epimerase; Validated
Probab=35.74 E-value=1.3e+02 Score=26.66 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=48.6
Q ss_pred cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCC
Q 041217 103 IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLP 182 (383)
Q Consensus 103 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 182 (383)
+...|+.++ ++++ +.+.+.|.|=|-|.+|-. ....++++.+|+. +...-+++-+..
T Consensus 62 DvHLMv~~P---~~~i----~~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~~-----------G~k~GlAlnP~T 117 (210)
T PRK08005 62 SFHLMVSSP---QRWL----PWLAAIRPGWIFIHAESV------QNPSEILADIRAI-----------GAKAGLALNPAT 117 (210)
T ss_pred EEEeccCCH---HHHH----HHHHHhCCCEEEEcccCc------cCHHHHHHHHHHc-----------CCcEEEEECCCC
Confidence 456777776 3454 444556999999999922 2244566666553 234556665432
Q ss_pred ccccCCCChhhhhccccEEEeeecc
Q 041217 183 AIDSVTYPIDSMLRNLDWVHVRAYD 207 (383)
Q Consensus 183 ~~~~~~~~~~~l~~~vD~v~lm~yd 207 (383)
... .+..+.+.+|+|.+|+-+
T Consensus 118 p~~----~i~~~l~~vD~VlvMsV~ 138 (210)
T PRK08005 118 PLL----PYRYLALQLDALMIMTSE 138 (210)
T ss_pred CHH----HHHHHHHhcCEEEEEEec
Confidence 221 345677889999999975
No 120
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=35.65 E-value=86 Score=23.50 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHHHHHHcCCCeEEEeccCCCC---------CcchhhHHHHHHHHHHHHH
Q 041217 111 SSNRKSFIESSIETARLYGFQGLDLSGVLPSK---------STNMTNLGILFDEWRAEVT 161 (383)
Q Consensus 111 ~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~---------~~~~~~~~~ll~~l~~~l~ 161 (383)
....++....+-+.+++++++=--+|.|+..+ .+.+-+|..|+++|...|+
T Consensus 21 ~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~ 80 (88)
T PF04468_consen 21 REREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFK 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhC
Confidence 34445666777788888998777778777642 4778899999999999985
No 121
>PRK09505 malS alpha-amylase; Reviewed
Probab=35.14 E-value=76 Score=33.62 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=24.7
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEEecc
Q 041217 110 QSSNRKSFIESSIETARLYGFQGLDLSGV 138 (383)
Q Consensus 110 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e 138 (383)
|++-|+.+++-+..|++++|+||+-||--
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 45777888888888999999999999964
No 122
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.72 E-value=1.7e+02 Score=27.68 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=47.0
Q ss_pred EeCCcchhhHHHHHHHHHhcCCCceEEEEEecCC----c------------------------------cchhhhcCchh
Q 041217 68 YINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGT----A------------------------------IFSSMVNQSSN 113 (383)
Q Consensus 68 ~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~----~------------------------------~~~~~~~~~~~ 113 (383)
.+..+.-...+++++.||++ |+|+++.|--.- . .+-. +.|++.
T Consensus 66 ~~d~~~FPdp~~mi~~L~~~--g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~D-ftnp~a 142 (317)
T cd06599 66 NWNKDRFPDPAAFVAKFHER--GIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVD-FTNPEG 142 (317)
T ss_pred ecCcccCCCHHHHHHHHHHC--CCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeec-CCChHH
Confidence 33333344567788888887 899998663210 0 0111 247788
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeccCC
Q 041217 114 RKSFIESSIETARLYGFQGLDLSGVLP 140 (383)
Q Consensus 114 r~~f~~~i~~~l~~~~~DGidiD~e~~ 140 (383)
|+-|.+.+.+.+.+.|+||+=+|...+
T Consensus 143 ~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 143 REWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred HHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 888888787888999999999998433
No 123
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=34.07 E-value=1.1e+02 Score=28.03 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHH
Q 041217 118 IESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTS 162 (383)
Q Consensus 118 ~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~ 162 (383)
..+.++.+++.|||||+|....+........-..-++++++.+.+
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEE 56 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999865442211110012456666666654
No 124
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=34.02 E-value=1.9e+02 Score=33.12 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEEe-------cCC-----------c--------------cch-----hhhcCchhHHH
Q 041217 74 EKSFSSFTNTVKRKNPSVVTLLSIR-------GGT-----------A--------------IFS-----SMVNQSSNRKS 116 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvllsig-------g~~-----------~--------------~~~-----~~~~~~~~r~~ 116 (383)
...++.+++.++++ |++|++-+= +.. . .+. .-+.++.-|+-
T Consensus 246 ~~efk~lV~~~H~~--GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~ 323 (1221)
T PRK14510 246 EEEFAQAIKEAQSA--GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRL 323 (1221)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHH
Confidence 34588888888877 899998751 000 0 000 11224556666
Q ss_pred HHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHH
Q 041217 117 FIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 117 f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
.++++.-|++ +++||.-||.-....... ..|+++++..+++.
T Consensus 324 i~d~lr~Wv~-~gVDGfRfDla~~l~r~~----~~f~~~~~~~l~ai 365 (1221)
T PRK14510 324 PMDVLRSWAK-RGVDGFRLDLADELAREP----DGFIDEFRQFLKAM 365 (1221)
T ss_pred HHHHHHHHHH-hCCCEEEEechhhhccCc----cchHHHHHHHHHHh
Confidence 6677778888 999999999753221011 23555555555544
No 125
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=33.97 E-value=87 Score=21.31 Aligned_cols=40 Identities=10% Similarity=-0.013 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCCeE-EEeccCCCCCcchhhHHHHHHHHHHH
Q 041217 119 ESSIETARLYGFQGL-DLSGVLPSKSTNMTNLGILFDEWRAE 159 (383)
Q Consensus 119 ~~i~~~l~~~~~DGi-diD~e~~~~~~~~~~~~~ll~~l~~~ 159 (383)
..+++.|++.|+||. .|.||-+.- +-.+.+.+-++-||..
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-~~~~G~~~a~~~lr~~ 43 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-DPEEGAREAAAFLRKL 43 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-CHHHHHHHHHHHHHHh
Confidence 367889999999995 678885543 3334444444444443
No 126
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=33.69 E-value=1.5e+02 Score=24.71 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=38.1
Q ss_pred chhhHHHHHHHHHhcCCCceEEE-EEecCCc-cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEe
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLL-SIRGGTA-IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLS 136 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvll-sigg~~~-~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD 136 (383)
....+..+++.++++.|+.+|++ ++--... .. ......+..+++.+.+.++++++++.=||+.
T Consensus 73 ~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~-~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 137 (174)
T cd01841 73 FIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDE-IKTRSNTRIQRLNDAIKELAPELGVTFIDLN 137 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccc-cccCCHHHHHHHHHHHHHHHHHCCCEEEEcH
Confidence 35557788888888889998774 3322111 10 0011234567777888888888876555543
No 127
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.55 E-value=1.7e+02 Score=27.61 Aligned_cols=71 Identities=11% Similarity=-0.054 Sum_probs=44.3
Q ss_pred EEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCc----------------------------------cchhhhcCc
Q 041217 66 TLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA----------------------------------IFSSMVNQS 111 (383)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~----------------------------------~~~~~~~~~ 111 (383)
..++..+.-...+++++.||++ |+|+++.+--.-. .+-. +.|+
T Consensus 61 ~f~wd~~~FPdp~~mi~~L~~~--G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~D-ftnp 137 (317)
T cd06598 61 NLDWDRKAFPDPAGMIADLAKK--GVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLID-WFDP 137 (317)
T ss_pred eeEeccccCCCHHHHHHHHHHc--CCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccC-CCCH
Confidence 3444444444456788888887 7888877622100 1112 2377
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEEeccCC
Q 041217 112 SNRKSFIESSIETARLYGFQGLDLSGVLP 140 (383)
Q Consensus 112 ~~r~~f~~~i~~~l~~~~~DGidiD~e~~ 140 (383)
+.|+=|.+.+.+ +.+.|+||+=+|+..|
T Consensus 138 ~a~~w~~~~~~~-~~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 138 AAQAWFHDNYKK-LIDQGVTGWWGDLGEP 165 (317)
T ss_pred HHHHHHHHHHHH-hhhCCccEEEecCCCc
Confidence 777767665554 5788999999999543
No 128
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=33.46 E-value=1.5e+02 Score=26.77 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=47.8
Q ss_pred cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCC
Q 041217 103 IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLP 182 (383)
Q Consensus 103 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 182 (383)
....|+.++ +++++.+ .+.|.|=|-|..|-.. ....++++.+|+. +....+++-|..
T Consensus 63 DvHLMv~~P---~~~i~~~----~~aGad~it~H~Ea~~-----~~~~~~i~~Ik~~-----------G~kaGlalnP~T 119 (229)
T PRK09722 63 DVHLMVTDP---QDYIDQL----ADAGADFITLHPETIN-----GQAFRLIDEIRRA-----------GMKVGLVLNPET 119 (229)
T ss_pred EEEEEecCH---HHHHHHH----HHcCCCEEEECccCCc-----chHHHHHHHHHHc-----------CCCEEEEeCCCC
Confidence 456677666 4455443 4459999999999221 1234566665553 234555665432
Q ss_pred ccccCCCChhhhhccccEEEeeecc
Q 041217 183 AIDSVTYPIDSMLRNLDWVHVRAYD 207 (383)
Q Consensus 183 ~~~~~~~~~~~l~~~vD~v~lm~yd 207 (383)
.. -.+..+.+.+|+|.+|+-+
T Consensus 120 ~~----~~l~~~l~~vD~VLvMsV~ 140 (229)
T PRK09722 120 PV----ESIKYYIHLLDKITVMTVD 140 (229)
T ss_pred CH----HHHHHHHHhcCEEEEEEEc
Confidence 22 1356788889999999986
No 129
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=33.14 E-value=2.3e+02 Score=27.19 Aligned_cols=75 Identities=7% Similarity=0.004 Sum_probs=45.2
Q ss_pred HHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC-----CcchhhHHHHHH
Q 041217 80 FTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK-----STNMTNLGILFD 154 (383)
Q Consensus 80 ~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----~~~~~~~~~ll~ 154 (383)
+++.+++...++.+++||+|... ......-+.|++.+-++ .. +.|++++++--|.. .++.+.+.++++
T Consensus 127 ~~~~l~~~~~~~pvivsI~~~~~-----~~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~ 199 (344)
T PRK05286 127 LAERLKKAYRGIPLGINIGKNKD-----TPLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALDELLA 199 (344)
T ss_pred HHHHHHHhcCCCcEEEEEecCCC-----CCcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHHHHHH
Confidence 34434432256789999988421 00112334555444443 44 48999999876643 245567788888
Q ss_pred HHHHHHH
Q 041217 155 EWRAEVT 161 (383)
Q Consensus 155 ~l~~~l~ 161 (383)
++|+...
T Consensus 200 aVr~~~~ 206 (344)
T PRK05286 200 ALKEAQA 206 (344)
T ss_pred HHHHHHh
Confidence 8888775
No 130
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=32.66 E-value=2.3e+02 Score=26.50 Aligned_cols=110 Identities=11% Similarity=0.052 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcC-CCeEEEeccCCCC-CcchhhHHHHH
Q 041217 76 SFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYG-FQGLDLSGVLPSK-STNMTNLGILF 153 (383)
Q Consensus 76 ~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~e~~~~-~~~~~~~~~ll 153 (383)
....+++.++++ +..++..+-.+...=. .-+.+.-+++...+++-|+..+ +|||-++.=.... ....+.=..||
T Consensus 46 ~~~g~~~~a~~~--g~e~vp~~~a~A~P~G--~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~EG~Ll 121 (292)
T PF07364_consen 46 EIGGFLDAAEAQ--GWEVVPLLWAAAEPGG--PVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGEGDLL 121 (292)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEEEEE-SEE---B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHHHHHH
T ss_pred chHHHHHHHHHC--CCEEEeeEeeeecCCC--cccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCchHHHH
Confidence 345666666665 7788877633221000 1123555788899999999986 8999999864432 11222335799
Q ss_pred HHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhhccccEEEe
Q 041217 154 DEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHV 203 (383)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~l 203 (383)
+++|+.+.. +.-|.+++-...+. -+.+.+.+|.+..
T Consensus 122 ~rvR~~vGp--------~vpI~~tlDlHaNv------s~~mv~~ad~~~~ 157 (292)
T PF07364_consen 122 RRVRAIVGP--------DVPIAATLDLHANV------SPRMVEAADIIVG 157 (292)
T ss_dssp HHHHHHHTT--------TSEEEEEE-TT----------HHHHHH-SEEEE
T ss_pred HHHHHHhCC--------CCeEEEEeCCCCCc------cHHHHHhCCEEEE
Confidence 999999853 44555555321221 2688889998754
No 131
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=32.36 E-value=78 Score=26.85 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=33.4
Q ss_pred cCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHH
Q 041217 109 NQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDE 155 (383)
Q Consensus 109 ~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~ 155 (383)
.+++..++.+.|-+..|.+-|.-|+.|.+| .++.++.+..+++.
T Consensus 145 k~~eik~kiIkNsinvlmtRGIrGlyiyae---Dpelrerl~~l~~~ 188 (191)
T COG3410 145 KNQEIKEKIIKNSINVLMTRGIRGLYIYAE---DPELRERLVELKRG 188 (191)
T ss_pred hCHHHHHHHHHHHHHHHHhcccceEEEEEe---CHHHHHHHHHHHhh
Confidence 355777889999999999999999999999 33455555555443
No 132
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=31.78 E-value=2.3e+02 Score=27.77 Aligned_cols=83 Identities=8% Similarity=-0.053 Sum_probs=51.4
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEecCCc---cchhh-------hcCchhHHHH---HHHHHHHHHHcCCCeEEEeccC
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRGGTA---IFSSM-------VNQSSNRKSF---IESSIETARLYGFQGLDLSGVL 139 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg~~~---~~~~~-------~~~~~~r~~f---~~~i~~~l~~~~~DGidiD~e~ 139 (383)
..+..+++.+++|++ |+|+-+-...+.. .+... ...+...+-+ ..++.++|.+|+-|.+=+|+.+
T Consensus 126 krDiv~el~~A~rk~--Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 126 KRDLVGELADAVRKR--GLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred CcchHHHHHHHHHHc--CCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 456678888888888 8998887765322 22110 0111222222 6899999999999999999877
Q ss_pred CCCCcchhhHHHHHHHHHH
Q 041217 140 PSKSTNMTNLGILFDEWRA 158 (383)
Q Consensus 140 ~~~~~~~~~~~~ll~~l~~ 158 (383)
+.... ......|++.+|+
T Consensus 204 ~~~~~-~~~~~~l~~~~~~ 221 (384)
T smart00812 204 EAPDD-YWRSKEFLAWLYN 221 (384)
T ss_pred CCccc-hhcHHHHHHHHHH
Confidence 65422 2234445555554
No 133
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=31.77 E-value=2.3e+02 Score=27.10 Aligned_cols=121 Identities=12% Similarity=0.175 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCceEEEEEec---CCc--------cchhhhcC--chhHHHHHHHHHHHHHHcCCCeEEEeccCCC---
Q 041217 78 SSFTNTVKRKNPSVVTLLSIRG---GTA--------IFSSMVNQ--SSNRKSFIESSIETARLYGFQGLDLSGVLPS--- 141 (383)
Q Consensus 78 ~~~~~~lk~~~p~~kvllsigg---~~~--------~~~~~~~~--~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~--- 141 (383)
..+.+..|+ -|+||+|.+-= |.. .|..+--+ .+....+..++++.|+.. |+..||-+.+
T Consensus 61 ~~~akrak~--~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~---G~~pd~VQVGNEi 135 (332)
T PF07745_consen 61 IALAKRAKA--AGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA---GVTPDMVQVGNEI 135 (332)
T ss_dssp HHHHHHHHH--TT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT---T--ESEEEESSSG
T ss_pred HHHHHHHHH--CCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCccEEEeCccc
Confidence 334334444 49999999832 211 23332000 134456667777777775 5667764433
Q ss_pred ---------CCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhh---ccccEEEeeeccC
Q 041217 142 ---------KSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSML---RNLDWVHVRAYDY 208 (383)
Q Consensus 142 ---------~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~---~~vD~v~lm~yd~ 208 (383)
...+..++.+||++-.++.++.. ++..+.+.+..........+-+..+. --.|.|-+-.|-+
T Consensus 136 n~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~-----p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~ 209 (332)
T PF07745_consen 136 NNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD-----PNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPF 209 (332)
T ss_dssp GGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS-----STSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-ST
T ss_pred cccccCcCCCccCHHHHHHHHHHHHHHHHhcC-----CCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCC
Confidence 23566677777777666666542 23445555443222211111123332 3356676666643
No 134
>COG5510 Predicted small secreted protein [Function unknown]
Probab=31.73 E-value=50 Score=21.20 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=7.4
Q ss_pred CchhhHHHHHHHHHH
Q 041217 1 MACKTMILFLLLLFC 15 (383)
Q Consensus 1 M~~~~~~~~l~~~~~ 15 (383)
|.+|++.+..+++++
T Consensus 1 mmk~t~l~i~~vll~ 15 (44)
T COG5510 1 MMKKTILLIALVLLA 15 (44)
T ss_pred CchHHHHHHHHHHHH
Confidence 666655544333333
No 135
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=31.39 E-value=2.1e+02 Score=30.73 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhcCCCce---EEEEEec-CCc------cc----------------------------hhhhcCchhHHH
Q 041217 75 KSFSSFTNTVKRKNPSVV---TLLSIRG-GTA------IF----------------------------SSMVNQSSNRKS 116 (383)
Q Consensus 75 ~~~~~~~~~lk~~~p~~k---vllsigg-~~~------~~----------------------------~~~~~~~~~r~~ 116 (383)
..++.+++.+|+++|++| |+-+|-| |++ .+ ..-+-+++...+
T Consensus 390 ~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~glv~P~~~~~ 469 (865)
T PLN02982 390 SGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIGLVHPSQAGD 469 (865)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCceeccCHHHHHH
Confidence 468899999999998765 4455533 433 00 011234777899
Q ss_pred HHHHHHHHHHHcCCCeEEEeccC
Q 041217 117 FIESSIETARLYGFQGLDLSGVL 139 (383)
Q Consensus 117 f~~~i~~~l~~~~~DGidiD~e~ 139 (383)
|-+..-++|.+.|+|||-+|-+.
T Consensus 470 FYd~~hsyLas~GVDgVKVDvQ~ 492 (865)
T PLN02982 470 FYDSMHSYLASVGITGVKVDVIH 492 (865)
T ss_pred HHHHHHHHHHHcCCCeEEEchhh
Confidence 99999999999999999999875
No 136
>PRK14866 hypothetical protein; Provisional
Probab=31.29 E-value=94 Score=31.00 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=51.5
Q ss_pred EEEEeCCCcEEEeCCcchhh--HHHHHHHHHhcCCCceEEEEEecCCc--cch-----------hhhcCchhHHHHH-H-
Q 041217 57 FAYLNSSTFTLYINSTYEKS--FSSFTNTVKRKNPSVVTLLSIRGGTA--IFS-----------SMVNQSSNRKSFI-E- 119 (383)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~lk~~~p~~kvllsigg~~~--~~~-----------~~~~~~~~r~~f~-~- 119 (383)
|+++... .-.|.|+.... .+.+++.+.....+.++++.|||.-. .+. .++.+-.. ..+- .
T Consensus 151 FvEIGSt--e~eW~d~~a~~~vA~ail~~~~~~~~~~~~~iG~GGgHYapr~t~i~le~~~~~GHi~pky~l-~~l~~~~ 227 (451)
T PRK14866 151 FVELGST--EKEWDDPDAARAVARAILDLRGVPPHTDRPLVGFGGGHYAPRQTRIVLETDWAFGHIAADWQL-GALGDPA 227 (451)
T ss_pred EEEeCCC--HHHhCCcHHHHHHHHHHHHHhcccccCCCEEEEeCCCCcchhHHHHhhcCCeeEEeeccccch-hccCcHH
Confidence 4555543 33455553222 33444433322246789999999533 222 22222111 1010 1
Q ss_pred HHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHH
Q 041217 120 SSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEW 156 (383)
Q Consensus 120 ~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l 156 (383)
.+.+.+++.+.|.+-|||....+ .+++.+..+++++
T Consensus 228 ~i~~a~~~~~~~~a~iD~Ks~k~-~~r~~i~~~l~~l 263 (451)
T PRK14866 228 VLRAAFEASGADAAYIDRKAMSS-GDRPRLEALLEEL 263 (451)
T ss_pred HHHHHHHhcCCCEEEEecCCCCH-HHHHHHHHHHHHC
Confidence 33455556789999999986554 6777777777766
No 137
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.24 E-value=2.4e+02 Score=26.21 Aligned_cols=73 Identities=5% Similarity=-0.013 Sum_probs=49.7
Q ss_pred EEEeCCcchhhHHHHHHHHHhcCCCceEEEEEecCC------ccch-----------------hhhcCchhHHHHHHHHH
Q 041217 66 TLYINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGT------AIFS-----------------SMVNQSSNRKSFIESSI 122 (383)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~------~~~~-----------------~~~~~~~~r~~f~~~i~ 122 (383)
..++....-...+++++.||++ |+|+++.+--.. ..+. .-..+++.++-+.+.+.
T Consensus 65 ~ft~d~~~FPdp~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~ 142 (292)
T cd06595 65 GYSWNRKLFPDPEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVH 142 (292)
T ss_pred eeEEChhcCCCHHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHH
Confidence 3444444445567888888887 899998773210 0111 12346777888889999
Q ss_pred HHHHHcCCCeEEEeccCC
Q 041217 123 ETARLYGFQGLDLSGVLP 140 (383)
Q Consensus 123 ~~l~~~~~DGidiD~e~~ 140 (383)
+.+.+.|+||+=+|+..+
T Consensus 143 ~~~~~~Gidg~W~D~~E~ 160 (292)
T cd06595 143 RPLEKQGVDFWWLDWQQG 160 (292)
T ss_pred HHHHhcCCcEEEecCCCC
Confidence 999999999999998433
No 138
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=30.80 E-value=1.9e+02 Score=29.40 Aligned_cols=126 Identities=10% Similarity=0.140 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCc--------cc---hhhh--cCchhHHHHHHHHHHHHHHcCCCeEEEeccC----C
Q 041217 78 SSFTNTVKRKNPSVVTLLSIRGGTA--------IF---SSMV--NQSSNRKSFIESSIETARLYGFQGLDLSGVL----P 140 (383)
Q Consensus 78 ~~~~~~lk~~~p~~kvllsigg~~~--------~~---~~~~--~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~----~ 140 (383)
..+++.+++.+|++|++.|- |+. .+ ..+- ..++..+.+++=++++++.|.--||+|+--. |
T Consensus 156 ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP 233 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASP--WSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEP 233 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--S---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSC
T ss_pred HHHHHHHHHhCCCcEEEEec--CCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 45666777788999999775 333 11 1111 1235679999999999999998999996522 2
Q ss_pred CC-----------CcchhhHHHHHHH-HHHHHHHHhhccCCcceEEEEEecC--CCccccCCCChhhhhccccEEEeeec
Q 041217 141 SK-----------STNMTNLGILFDE-WRAEVTSEARNSGNSQLLLVMKSHH--LPAIDSVTYPIDSMLRNLDWVHVRAY 206 (383)
Q Consensus 141 ~~-----------~~~~~~~~~ll~~-l~~~l~~~~~~~~~~~~~ls~a~~~--~~~~~~~~~~~~~l~~~vD~v~lm~y 206 (383)
.. .-..+....||+. |+-+|++.+.. ..-.++...-.. .+.....-+.-++..+++|-+-+.-|
T Consensus 234 ~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g--~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY 311 (496)
T PF02055_consen 234 DNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG--KDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWY 311 (496)
T ss_dssp CGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEET
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC--CceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECC
Confidence 11 1123446788886 99999875310 011233322110 01100000122456667888877777
Q ss_pred c
Q 041217 207 D 207 (383)
Q Consensus 207 d 207 (383)
.
T Consensus 312 ~ 312 (496)
T PF02055_consen 312 G 312 (496)
T ss_dssp T
T ss_pred C
Confidence 3
No 139
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=30.32 E-value=2e+02 Score=25.94 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=49.5
Q ss_pred cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCC
Q 041217 103 IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLP 182 (383)
Q Consensus 103 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 182 (383)
+...|+.++ .+++ +.+.+.|.|-|-|..|-. ....++|+.+|+. | .+....+++-|..
T Consensus 72 DvHLMv~~P---~~~i----~~~~~aGad~It~H~Ea~------~~~~~~l~~Ik~~----g-----~~~kaGlalnP~T 129 (228)
T PRK08091 72 DVHLMVRDQ---FEVA----KACVAAGADIVTLQVEQT------HDLALTIEWLAKQ----K-----TTVLIGLCLCPET 129 (228)
T ss_pred EEEeccCCH---HHHH----HHHHHhCCCEEEEcccCc------ccHHHHHHHHHHC----C-----CCceEEEEECCCC
Confidence 456677666 4454 344556999999999932 2245566666553 1 1124556665433
Q ss_pred ccccCCCChhhhhccccEEEeeeccC
Q 041217 183 AIDSVTYPIDSMLRNLDWVHVRAYDY 208 (383)
Q Consensus 183 ~~~~~~~~~~~l~~~vD~v~lm~yd~ 208 (383)
.. -.+..+.+.+|+|.+|+-+.
T Consensus 130 p~----~~i~~~l~~vD~VLiMtV~P 151 (228)
T PRK08091 130 PI----SLLEPYLDQIDLIQILTLDP 151 (228)
T ss_pred CH----HHHHHHHhhcCEEEEEEECC
Confidence 22 13567788899999999863
No 140
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=29.67 E-value=68 Score=22.08 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=12.1
Q ss_pred CchhhHHHHHHHHHHHhhh
Q 041217 1 MACKTMILFLLLLFCLPLN 19 (383)
Q Consensus 1 M~~~~~~~~l~~~~~l~~~ 19 (383)
|++|.+.+.++++.|++.-
T Consensus 1 MA~Kl~vialLC~aLva~v 19 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIV 19 (65)
T ss_pred CcchhhHHHHHHHHHHHHH
Confidence 8888766666665555533
No 141
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=29.54 E-value=4.1e+02 Score=23.64 Aligned_cols=168 Identities=11% Similarity=0.147 Sum_probs=77.7
Q ss_pred CCceEEEEEecCCc--cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhc
Q 041217 89 PSVVTLLSIRGGTA--IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARN 166 (383)
Q Consensus 89 p~~kvllsigg~~~--~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 166 (383)
.++.+++++--... .+. .+++ ..++-+...+...+.|-|||++..+. ..++++.+..++.
T Consensus 56 ~~~piI~T~R~~~eGG~~~---~~~~---~~~~ll~~~~~~~~~d~vDiEl~~~~---------~~~~~l~~~~~~~--- 117 (228)
T TIGR01093 56 PDKPLIFTIRTISEGGKFP---GNEE---EYLEELKRAADSPGPDFVDIELFLPD---------DAVKELINIAKKG--- 117 (228)
T ss_pred CCCcEEEEECChhhCCCCC---CCHH---HHHHHHHHHHHhCCCCEEEEEccCCH---------HHHHHHHHHHHHC---
Confidence 46899999954221 221 1222 23333444446677899999987432 2455555544332
Q ss_pred cCCcceEEEEEecC-CCccccCCCChhhhhcc-ccEEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCC
Q 041217 167 SGNSQLLLVMKSHH-LPAIDSVTYPIDSMLRN-LDWVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGF 244 (383)
Q Consensus 167 ~~~~~~~ls~a~~~-~~~~~~~~~~~~~l~~~-vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gv 244 (383)
+.+..+|..-.. .|.......-+..+.++ +|.+-+-+.- .++ .+...+......... ..
T Consensus 118 --~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a------------~~~----~D~~~ll~~~~~~~~-~~ 178 (228)
T TIGR01093 118 --GTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMA------------NSK----EDVLTLLEITNKVDE-HA 178 (228)
T ss_pred --CCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecc------------CCH----HHHHHHHHHHHHHHh-cC
Confidence 223444443221 11111101123445554 6776554421 000 000122222222211 11
Q ss_pred CCCcEEEecccceeeeeecCCCCCCCCCCCcCCCCCCCCcccHHHHHHH
Q 041217 245 PANKLVLGLPYHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAF 293 (383)
Q Consensus 245 p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~ei~~~ 293 (383)
...-|.+++.-.|+.-++.++--..+-..........+|.++..++.++
T Consensus 179 ~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~ 227 (228)
T TIGR01093 179 DVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLREL 227 (228)
T ss_pred CCCEEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhh
Confidence 2235677777777777666654333222221222335788998888763
No 142
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=28.93 E-value=2.8e+02 Score=28.56 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=78.5
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCC
Q 041217 110 QSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTY 189 (383)
Q Consensus 110 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~ 189 (383)
..+..+-|-.++-.+++.-.+-.+-|=|-...+-++-.....++++.+++++.++..... ++.|-+-+..+... +
T Consensus 364 ~l~~~~if~tQLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~-~i~lGiMIEvPsAa----~ 438 (574)
T COG1080 364 SLERPEIFRTQLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDE-KIELGIMIEVPSAA----L 438 (574)
T ss_pred hhccHHHHHHHHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCcccc-ccceeEEEehhHHH----H
Confidence 345557778888888888777677766554444455566678888888888887654331 34455444432222 2
Q ss_pred ChhhhhccccEEEeeeccCCCCCC--CCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcE
Q 041217 190 PIDSMLRNLDWVHVRAYDYYLPSR--DNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKL 249 (383)
Q Consensus 190 ~~~~l~~~vD~v~lm~yd~~~~~~--~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Ki 249 (383)
-...+++.|||+.|=|=|+-...- +---...|.+|+|-++ .+.+.|+..++.+.-..|.
T Consensus 439 ~a~~lakevDFfSIGTNDLtQYtLA~DR~n~~vs~ly~pl~P-AVLrlI~~vi~~ah~~gkw 499 (574)
T COG1080 439 IADQLAKEVDFFSIGTNDLTQYTLAVDRGNAKVSHLYDPLHP-AVLRLIKQVIDAAHRHGKW 499 (574)
T ss_pred HHHHHHHhCCEeeecccHHHHHHHHHhcCChhhhhhcCCCCH-HHHHHHHHHHHHHHHcCCe
Confidence 357899999999999888642100 0001122333433322 5666666666644444443
No 143
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=28.79 E-value=1.3e+02 Score=30.42 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=29.6
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHH
Q 041217 110 QSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTS 162 (383)
Q Consensus 110 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~ 162 (383)
+++-|+.+.+.+.-+++++|+||+-||--.-.. ..|++++++++++
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~-------~~f~~~~~~~~~~ 252 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHID-------AWFIKEWIEHVRE 252 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC-------HHHHHHHHHHHHH
Confidence 466667777655555566999999999642222 2466666666654
No 144
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=28.65 E-value=1.3e+02 Score=30.99 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccC
Q 041217 119 ESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSG 168 (383)
Q Consensus 119 ~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 168 (383)
+++++++.+.|+|=.-|||..|+.....-.+...++.+.++++.....+|
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG 286 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITG 286 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999997632222334444455555555443333
No 145
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=28.51 E-value=2.3e+02 Score=26.12 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHh-cCC--CceEEEEEecCCc----cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEe-ccCCCCC--
Q 041217 74 EKSFSSFTNTVKR-KNP--SVVTLLSIRGGTA----IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLS-GVLPSKS-- 143 (383)
Q Consensus 74 ~~~~~~~~~~lk~-~~p--~~kvllsigg~~~----~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD-~e~~~~~-- 143 (383)
+.++++++..-+. .+| +.+-++-||...+ .+..+.+. -...+....+..-|++.||+=++.| |+.....
T Consensus 75 ~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~-v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fD 153 (265)
T PF05219_consen 75 EEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKE-VYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFD 153 (265)
T ss_pred HHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcce-EEeecCCHHHHHHHHhCCCeEEehhhhhccCCceE
Confidence 4566666642221 223 4456789988766 22222211 1123344566778888999877764 6532210
Q ss_pred --------cchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCcc
Q 041217 144 --------TNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAI 184 (383)
Q Consensus 144 --------~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~ 184 (383)
+-...=..||+++|.+++..| .++|++++|..|..
T Consensus 154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G------~lilAvVlP~~pyV 196 (265)
T PF05219_consen 154 VISCLNVLDRCDRPLTLLRDIRRALKPNG------RLILAVVLPFRPYV 196 (265)
T ss_pred EEeehhhhhccCCHHHHHHHHHHHhCCCC------EEEEEEEecccccE
Confidence 111223589999999998644 58899999876654
No 146
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=28.37 E-value=3.9e+02 Score=23.03 Aligned_cols=134 Identities=11% Similarity=0.110 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCCCceEEEEEecCCc-c-chhhhcCchhH----HHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhH
Q 041217 76 SFSSFTNTVKRKNPSVVTLLSIRGGTA-I-FSSMVNQSSNR----KSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNL 149 (383)
Q Consensus 76 ~~~~~~~~lk~~~p~~kvllsigg~~~-~-~~~~~~~~~~r----~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~ 149 (383)
....+++.++++.|+.+|+++..-.++ . ....+.+.... --+-..+-++++...-|-+.+ .| .+..
T Consensus 36 a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~-~E-------tElW 107 (186)
T PF04413_consen 36 AARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIW-VE-------TELW 107 (186)
T ss_dssp HHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEE-ES-----------
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEE-Ec-------cccC
Confidence 356788899999999999999975444 1 11111000000 001122334444444443322 22 1333
Q ss_pred HHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccC--CCChhhhhccccEEEeeeccCCCCCCCCCCCCCCCCCCCC
Q 041217 150 GILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSV--TYPIDSMLRNLDWVHVRAYDYYLPSRDNFTGAHSALYSSS 227 (383)
Q Consensus 150 ~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~--~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~ 227 (383)
-.||.++++. +-+-+++...+......... ..-...+.+..|.|..++
T Consensus 108 Pnll~~a~~~--------~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs---------------------- 157 (186)
T PF04413_consen 108 PNLLREAKRR--------GIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQS---------------------- 157 (186)
T ss_dssp HHHHHH-------------S-EEEEEE--------------HHHHHHGGG-SEEEESS----------------------
T ss_pred HHHHHHHhhc--------CCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECC----------------------
Confidence 4566655542 12345566555532211110 112466667778876543
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEe
Q 041217 228 SWFNTNDSIREWLKTGFPANKLVLG 252 (383)
Q Consensus 228 ~~~~~~~~~~~~~~~gvp~~Kivlg 252 (383)
+...+.+.+.|++++||.+.
T Consensus 158 -----~~da~r~~~lG~~~~~v~v~ 177 (186)
T PF04413_consen 158 -----EADAERFRKLGAPPERVHVT 177 (186)
T ss_dssp -----HHHHHHHHTTT-S--SEEE-
T ss_pred -----HHHHHHHHHcCCCcceEEEe
Confidence 35667888999999998653
No 147
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=28.32 E-value=98 Score=27.89 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCCeEEEec
Q 041217 118 IESSIETARLYGFQGLDLSG 137 (383)
Q Consensus 118 ~~~i~~~l~~~~~DGidiD~ 137 (383)
....++.+++.|||||++.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLF 35 (254)
T ss_pred HHHHHHHHHHcCCCEEEecC
Confidence 45677888889999999975
No 148
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.95 E-value=3e+02 Score=27.14 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=37.7
Q ss_pred cCCCceEEEEEecCCccchhhhcCchhHHHHH-----HHHHHHHHHcC--CC-eEEEec--cCCCCCcchhhHHHHHHHH
Q 041217 87 KNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFI-----ESSIETARLYG--FQ-GLDLSG--VLPSKSTNMTNLGILFDEW 156 (383)
Q Consensus 87 ~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~-----~~i~~~l~~~~--~D-GidiD~--e~~~~~~~~~~~~~ll~~l 156 (383)
+.-|.++.+-|||+++-+..-....+.|+... .++-+..+..+ +| ...+=+ +|- ...+|..||+++
T Consensus 61 Q~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~----~~~~y~~~l~~~ 136 (401)
T COG0162 61 QDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWL----KKLNYLDFLRDV 136 (401)
T ss_pred HHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHh----CcCCHHHHHHHH
Confidence 34489999999998873333333334444443 55555555554 34 222211 222 335678888887
Q ss_pred HH
Q 041217 157 RA 158 (383)
Q Consensus 157 ~~ 158 (383)
-.
T Consensus 137 g~ 138 (401)
T COG0162 137 GK 138 (401)
T ss_pred Hh
Confidence 43
No 149
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=27.72 E-value=5.1e+02 Score=24.39 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=40.3
Q ss_pred cchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhhccccEEEeeec
Q 041217 144 TNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRNLDWVHVRAY 206 (383)
Q Consensus 144 ~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~y 206 (383)
..++.+..+++.|...-. .| +..=++.+-++|......|-+.+.+..+|++++..-
T Consensus 125 Ns~trl~~y~~~L~k~r~-~g------kkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV 180 (352)
T COG3053 125 NSATRLKDYLSSLKKLRH-PG------KKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVV 180 (352)
T ss_pred cCchhHHHHHHHHHHhcc-CC------CeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEE
Confidence 445667777777754332 12 356778888888877767889999999999998764
No 150
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=27.64 E-value=62 Score=21.32 Aligned_cols=8 Identities=38% Similarity=0.326 Sum_probs=4.5
Q ss_pred CchhhHHH
Q 041217 1 MACKTMIL 8 (383)
Q Consensus 1 M~~~~~~~ 8 (383)
|.+|++..
T Consensus 1 MmKk~i~~ 8 (48)
T PRK10081 1 MVKKTIAA 8 (48)
T ss_pred ChHHHHHH
Confidence 66665443
No 151
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=27.60 E-value=1.3e+02 Score=27.58 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=31.2
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHh
Q 041217 110 QSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEA 164 (383)
Q Consensus 110 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~ 164 (383)
+++-|+.+++ ++++..++++||+-||--.-.. ..++++++.+++...
T Consensus 143 n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~~-------~~~~~~~~~~~~~~~ 189 (316)
T PF00128_consen 143 NPEVREYIID-VLKFWIEEGIDGFRLDAAKHIP-------KEFWKEFRDEVKEEK 189 (316)
T ss_dssp SHHHHHHHHH-HHHHHHHTTESEEEETTGGGSS-------HHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcc-cccchhhceEeEEEEccccccc-------hhhHHHHhhhhhhhc
Confidence 4455665666 6666667789999999742222 267777777777643
No 152
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.27 E-value=2.5e+02 Score=23.17 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEE
Q 041217 74 EKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDL 135 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 135 (383)
...+..+++.+++++|+.+|++.---... ...-......+++-+.+.++++++++-=||+
T Consensus 71 ~~~l~~li~~~~~~~~~~~vi~~~~~p~~--~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~ 130 (169)
T cd01828 71 VANYRTILEKLRKHFPNIKIVVQSILPVG--ELKSIPNEQIEELNRQLAQLAQQEGVTFLDL 130 (169)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecCCcC--ccCcCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 34466677777777788887763211110 0011122344566666667777766544443
No 153
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=27.13 E-value=3.1e+02 Score=24.55 Aligned_cols=77 Identities=10% Similarity=0.143 Sum_probs=47.7
Q ss_pred cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCC
Q 041217 103 IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLP 182 (383)
Q Consensus 103 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 182 (383)
+...|+.++ ++++ +...+.|.|-|-|..| .. ...-++|+.+|+. +....+++-|..
T Consensus 65 DvHLMV~~p---~~~i----~~fa~agad~It~H~E--~~----~~~~r~i~~Ik~~-----------G~kaGv~lnP~T 120 (220)
T COG0036 65 DVHLMVENP---DRYI----EAFAKAGADIITFHAE--AT----EHIHRTIQLIKEL-----------GVKAGLVLNPAT 120 (220)
T ss_pred EEEEecCCH---HHHH----HHHHHhCCCEEEEEec--cC----cCHHHHHHHHHHc-----------CCeEEEEECCCC
Confidence 456777766 3343 3344568999999999 11 2334566666553 234555554432
Q ss_pred ccccCCCChhhhhccccEEEeeecc
Q 041217 183 AIDSVTYPIDSMLRNLDWVHVRAYD 207 (383)
Q Consensus 183 ~~~~~~~~~~~l~~~vD~v~lm~yd 207 (383)
... .+.-+.+.+|+|.+|+-+
T Consensus 121 p~~----~i~~~l~~vD~VllMsVn 141 (220)
T COG0036 121 PLE----ALEPVLDDVDLVLLMSVN 141 (220)
T ss_pred CHH----HHHHHHhhCCEEEEEeEC
Confidence 221 346777889999999976
No 154
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.03 E-value=2.4e+02 Score=23.68 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEEecCCc--cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEE
Q 041217 74 EKSFSSFTNTVKRKNPSVVTLLSIRGGTA--IFSSMVNQSSNRKSFIESSIETARLYGFQGLDL 135 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvllsigg~~~--~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 135 (383)
...+..+++.+++++|+.+|++.---... .+. ...+....+.+.+.+.+..+++++.=||+
T Consensus 92 ~~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 92 KKDYETMIDSFQALPSKPKIYICYPIPAYYGDGG-FINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCcccccCCC-ccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 34577888889998999888764321111 111 12223344566677777788877654443
No 155
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=26.87 E-value=5.1e+02 Score=23.97 Aligned_cols=89 Identities=10% Similarity=0.034 Sum_probs=49.3
Q ss_pred CceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHc--CCCeEEEeccCCCCC-------cchhhHHHHHHHHHHHH
Q 041217 90 SVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLY--GFQGLDLSGVLPSKS-------TNMTNLGILFDEWRAEV 160 (383)
Q Consensus 90 ~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~--~~DGidiD~e~~~~~-------~~~~~~~~ll~~l~~~l 160 (383)
+..++++|.|.+ + +.++ .+++.+++. ++|+|||++--|... .+.+...++++++|++.
T Consensus 90 ~~pl~~qi~g~~---------~---~~~~-~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~ 156 (300)
T TIGR01037 90 PTPLIASVYGSS---------V---EEFA-EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT 156 (300)
T ss_pred CCcEEEEeecCC---------H---HHHH-HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc
Confidence 467899997742 1 2333 445555554 389999998766532 23445566666666654
Q ss_pred HHHhhccCCcceEEEEEecCCCccccCCCChhh-hhc-cccEEEee
Q 041217 161 TSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDS-MLR-NLDWVHVR 204 (383)
Q Consensus 161 ~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~-l~~-~vD~v~lm 204 (383)
+ +-+++-+.+... . ...+.+ +.+ -+|.+++.
T Consensus 157 ~----------~pv~vKi~~~~~--~-~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 157 D----------VPVFAKLSPNVT--D-ITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred C----------CCEEEECCCChh--h-HHHHHHHHHHcCCCEEEEE
Confidence 1 346666653211 1 112222 222 27999875
No 156
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.47 E-value=4.2e+02 Score=22.86 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=92.3
Q ss_pred CCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChh---hhhccccEEEeee
Q 041217 129 GFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPID---SMLRNLDWVHVRA 205 (383)
Q Consensus 129 ~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~---~l~~~vD~v~lm~ 205 (383)
|.|=| |..+|..-+=..+|.=.++++++..+. ...+|.++.--|+... ...+. ....-+||+-+-.
T Consensus 20 GAdIi--DVKNP~EGSLGANFPWvIr~i~Ev~p~--------d~~vSAT~GDvpYKPG-T~slAalGaav~GaDYiKVGL 88 (235)
T COG1891 20 GADII--DVKNPAEGSLGANFPWVIREIREVVPE--------DQEVSATVGDVPYKPG-TASLAALGAAVAGADYIKVGL 88 (235)
T ss_pred CCceE--eccCcccCcccCCChHHHHHHHHhCcc--------ceeeeeeecCCCCCCc-hHHHHHHHhHhhCCceEEEee
Confidence 45543 556676545668899999999998753 4578877754343322 12233 3334479999988
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCcEEEecccceeeeeecCCCCCCCCCCCcCCCCCCCCcc
Q 041217 206 YDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGFPANKLVLGLPYHGYAWQLVNPNENAVGAPAAGPAITMDGSM 285 (383)
Q Consensus 206 yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gvp~~Kivlglp~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 285 (383)
|+..+.. .| +.+...+-...+ .++++|+|+.- -|+--++. |.+
T Consensus 89 Yg~kn~~-------eA--------~e~m~~vvrAVk-d~d~~k~VVAa-GYaDa~Rv--------------------gsv 131 (235)
T COG1891 89 YGTKNEE-------EA--------LEVMKNVVRAVK-DFDPSKKVVAA-GYADAHRV--------------------GSV 131 (235)
T ss_pred cccccHH-------HH--------HHHHHHHHHHHh-ccCCCceEEec-cccchhhc--------------------cCc
Confidence 8643210 00 022222222333 57888888754 23322221 112
Q ss_pred cHHHHHHHHhhCCCceEEE-EcCCceeeEEEeCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 041217 286 GYKSIKAFIRDYGYGVASL-YNDSYDVNFFSSGKNWINFDGAEAITAKVSFAKEKGLLGYNAFQLSNDD 353 (383)
Q Consensus 286 ~y~ei~~~~~~~~~~~~~~-~D~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~l~~Dd 353 (383)
+--++.+...+.| .... .|-. .-+++..+-|.+.+-+..=.+.++++||.-.-.=++..++
T Consensus 132 ~Pl~~P~vaa~ag--~DvaMvDTa-----iKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~eh 193 (235)
T COG1891 132 SPLLLPEVAAEAG--ADVAMVDTA-----IKDGKSLFDFMDEEELEEFVDLAHEHGLEVALAGSLKFEH 193 (235)
T ss_pred CccccHHHHHhcC--CCEEEEecc-----cccchhHHhhhcHHHHHHHHHHHHHcchHHHhcccccccc
Confidence 2222333333333 1111 1100 0145666788999999999999999998544444555554
No 157
>PF14443 DBC1: DBC1
Probab=25.81 E-value=70 Score=25.81 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=25.1
Q ss_pred EEEEEec-CCccchhhhcCchh-HHHHHHHHHHHHHHcCCCeEEE
Q 041217 93 TLLSIRG-GTAIFSSMVNQSSN-RKSFIESSIETARLYGFQGLDL 135 (383)
Q Consensus 93 vllsigg-~~~~~~~~~~~~~~-r~~f~~~i~~~l~~~~~DGidi 135 (383)
=+++||| |+..+.- .|++. -..+|+..++.++.+ -|||+
T Consensus 18 e~~aiGG~WspsLDG--~DP~~dp~~LI~TAiR~~K~~--tgiDL 58 (126)
T PF14443_consen 18 EIMAIGGPWSPSLDG--GDPSSDPSVLIRTAIRTCKAL--TGIDL 58 (126)
T ss_pred eEEecCCcCCcccCC--CCCCCCcHHHHHHHHHHHHHH--hccch
Confidence 4678988 5441110 13322 478999999999985 57777
No 158
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.71 E-value=87 Score=31.13 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=38.5
Q ss_pred hhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHH
Q 041217 105 SSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVT 161 (383)
Q Consensus 105 ~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~ 161 (383)
...+++...|++.+..|+++|+++|||| -|-....-.|+ ...|....|-|+..++
T Consensus 97 pRplrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~~PS-~k~F~~IFK~LY~~lD 151 (622)
T COG5185 97 PRPLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLKQPS-QKGFIIIFKWLYLRLD 151 (622)
T ss_pred CcccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhcCCc-cccHHHHHHHHHhccC
Confidence 3456778889999999999999999997 22221111122 2468888888887775
No 159
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=25.59 E-value=4.8e+02 Score=23.57 Aligned_cols=71 Identities=13% Similarity=0.270 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcC--CCeEEEeccCCCCCcchhhHHHHHHHH
Q 041217 79 SFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYG--FQGLDLSGVLPSKSTNMTNLGILFDEW 156 (383)
Q Consensus 79 ~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~--~DGidiD~e~~~~~~~~~~~~~ll~~l 156 (383)
..-+.+|+..|++|+++. +. ... ....+++++. .+++.|++.| +|||-+-+-......+...+.+.|+++
T Consensus 107 ~af~~ar~~~P~a~l~~N--dy----~~~-~~~~k~~~~~-~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~ 178 (254)
T smart00633 107 KAFRYAREADPDAKLFYN--DY----NTE-EPNAKRQAIY-ELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRF 178 (254)
T ss_pred HHHHHHHHhCCCCEEEEe--cc----CCc-CccHHHHHHH-HHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHH
Confidence 334578889999999875 21 111 1114444444 4444555544 699888543211111233455555555
Q ss_pred H
Q 041217 157 R 157 (383)
Q Consensus 157 ~ 157 (383)
.
T Consensus 179 ~ 179 (254)
T smart00633 179 A 179 (254)
T ss_pred H
Confidence 3
No 160
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=25.24 E-value=2.8e+02 Score=26.51 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=18.4
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEec
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRG 99 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg 99 (383)
.-..++++.+.+|+. +.|+++-+..
T Consensus 75 ~i~~lr~la~~vh~~--ga~~~~QL~H 99 (338)
T cd02933 75 QVEGWKKVTDAVHAK--GGKIFLQLWH 99 (338)
T ss_pred HHHHHHHHHHHHHhc--CCeEEEEccc
Confidence 445678888888877 7888887743
No 161
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=25.18 E-value=2.7e+02 Score=26.29 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=45.0
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEecCCc----c-chhh----------------------------hcCchhHHHHHH
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRGGTA----I-FSSM----------------------------VNQSSNRKSFIE 119 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg~~~----~-~~~~----------------------------~~~~~~r~~f~~ 119 (383)
.-...+++++.||++ |+|+++.|--.-. . +..+ ..|++.|+=+.+
T Consensus 69 ~FPdp~~mi~~Lh~~--G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 146 (317)
T cd06594 69 RYPGLDELIEELKAR--GIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQ 146 (317)
T ss_pred hCCCHHHHHHHHHHC--CCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHH
Confidence 334467888888887 8888877743211 1 1221 235788888888
Q ss_pred HHHHHHHHcCCCeEEEecc
Q 041217 120 SSIETARLYGFQGLDLSGV 138 (383)
Q Consensus 120 ~i~~~l~~~~~DGidiD~e 138 (383)
.+.+++.+.|+||+=+|+.
T Consensus 147 ~~~~~~~~~Gvdg~w~D~~ 165 (317)
T cd06594 147 VIKEMLLDLGLSGWMADFG 165 (317)
T ss_pred HHHHHhhhcCCcEEEecCC
Confidence 8888888899999999983
No 162
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=24.77 E-value=2.4e+02 Score=25.23 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=48.4
Q ss_pred cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCC
Q 041217 103 IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLP 182 (383)
Q Consensus 103 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 182 (383)
+...|+.++ +++++ .+.+.|.|=|-|..|-. ....++|+.+|+. +....+++-|..
T Consensus 66 dvHLMv~~P---~~~i~----~~~~~gad~I~~H~Ea~------~~~~~~l~~Ir~~-----------g~k~GlalnP~T 121 (223)
T PRK08745 66 DVHLMVEPV---DRIVP----DFADAGATTISFHPEAS------RHVHRTIQLIKSH-----------GCQAGLVLNPAT 121 (223)
T ss_pred EEEeccCCH---HHHHH----HHHHhCCCEEEEcccCc------ccHHHHHHHHHHC-----------CCceeEEeCCCC
Confidence 346667666 44554 34446999999999932 2245666666653 234555554432
Q ss_pred ccccCCCChhhhhccccEEEeeeccC
Q 041217 183 AIDSVTYPIDSMLRNLDWVHVRAYDY 208 (383)
Q Consensus 183 ~~~~~~~~~~~l~~~vD~v~lm~yd~ 208 (383)
... .+..+.+.+|+|.+|+-+.
T Consensus 122 ~~~----~i~~~l~~vD~VlvMtV~P 143 (223)
T PRK08745 122 PVD----ILDWVLPELDLVLVMSVNP 143 (223)
T ss_pred CHH----HHHHHHhhcCEEEEEEECC
Confidence 221 3467788999999999863
No 163
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=24.63 E-value=5.4e+02 Score=27.72 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEecc
Q 041217 114 RKSFIESSIETARLYGFQGLDLSGV 138 (383)
Q Consensus 114 r~~f~~~i~~~l~~~~~DGidiD~e 138 (383)
.+.|++... .+++-|||||+|..-
T Consensus 550 i~~f~~aA~-~a~~aGfDgveih~a 573 (765)
T PRK08255 550 RDDFVAAAR-RAAEAGFDWLELHCA 573 (765)
T ss_pred HHHHHHHHH-HHHHcCCCEEEEecc
Confidence 455665444 455679999999875
No 164
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=24.08 E-value=4.7e+02 Score=23.74 Aligned_cols=55 Identities=4% Similarity=0.042 Sum_probs=41.1
Q ss_pred HHHHHhcCCCceEEEEEecCCc-cchhhhcCchhHHHHHHHHHHHHH-HcCCCeEEEecc
Q 041217 81 TNTVKRKNPSVVTLLSIRGGTA-IFSSMVNQSSNRKSFIESSIETAR-LYGFQGLDLSGV 138 (383)
Q Consensus 81 ~~~lk~~~p~~kvllsigg~~~-~~~~~~~~~~~r~~f~~~i~~~l~-~~~~DGidiD~e 138 (383)
.+.+++..|+..++ -+|.... .+.. ++.+....++..+++++. +.|.|-|.|-+.
T Consensus 14 ~~~l~~~~p~~~~i-y~~D~~~~PYG~--ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCN 70 (251)
T TIGR00067 14 LKEIRKQLPKEHYI-YVGDTKRFPYGE--KSPEFILEYVLELLTFLKERHNIKLLVVACN 70 (251)
T ss_pred HHHHHHHCCCCCEE-EEecCCCCCCCC--CCHHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 35688888888775 4555332 4443 556777888889999998 999999999887
No 165
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.07 E-value=1.3e+02 Score=27.50 Aligned_cols=47 Identities=9% Similarity=-0.051 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCeEEEeccCCCCCcch-hhHHHHHHHHHHHHHHHh
Q 041217 118 IESSIETARLYGFQGLDLSGVLPSKSTNM-TNLGILFDEWRAEVTSEA 164 (383)
Q Consensus 118 ~~~i~~~l~~~~~DGidiD~e~~~~~~~~-~~~~~ll~~l~~~l~~~~ 164 (383)
...+++.+++.|||||+|....+....+. .....-++++++.+.+.|
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 65 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETG 65 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcC
Confidence 34667889999999999975432110000 112456777888887643
No 166
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.04 E-value=1.5e+02 Score=24.83 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=36.3
Q ss_pred chhhHHHHHHHHHhcCCCceEEEEEecCCccch---hhhcCchhHHHHHHHHHHHHHHcCCCeEE
Q 041217 73 YEKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFS---SMVNQSSNRKSFIESSIETARLYGFQGLD 134 (383)
Q Consensus 73 ~~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~---~~~~~~~~r~~f~~~i~~~l~~~~~DGid 134 (383)
....+..+++.+++++|+.+|++. +-...... .........+.+.+.+.+++++++..=||
T Consensus 79 ~~~~~~~li~~i~~~~~~~~iv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vd 142 (189)
T cd01825 79 YRQQLREFIKRLRQILPNASILLV-GPPDSLQKTGAGRWRTPPGLDAVIAAQRRVAKEEGIAFWD 142 (189)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEE-cCCchhccCCCCCcccCCcHHHHHHHHHHHHHHcCCeEEe
Confidence 355677888888988899998863 22111000 01112234567777888888888743333
No 167
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.74 E-value=5.7e+02 Score=23.69 Aligned_cols=81 Identities=9% Similarity=0.121 Sum_probs=58.1
Q ss_pred EeCCcchhhHHHHHHHHHhcCCCceEEEEEecCCc-cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcch
Q 041217 68 YINSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA-IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNM 146 (383)
Q Consensus 68 ~~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~-~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~ 146 (383)
-+.|+.-..+.-+. .++++-|+-.++ =+|.... .+.. ++++...+++-.+++++.+.+.+=+.|-+.
T Consensus 9 gvFDSGVGGLsVlr-ei~~~LP~e~~i-Y~~D~a~~PYG~--ks~e~I~~~~~~i~~~l~~~~ik~lVIACN-------- 76 (269)
T COG0796 9 GVFDSGVGGLSVLR-EIRRQLPDEDII-YVGDTARFPYGE--KSEEEIRERTLEIVDFLLERGIKALVIACN-------- 76 (269)
T ss_pred EEEECCCCcHHHHH-HHHHHCCCCcEE-EEecCCCCCCCC--CCHHHHHHHHHHHHHHHHHcCCCEEEEecc--------
Confidence 34455555555454 577888888876 4444322 4443 567888999999999999999999999988
Q ss_pred hhHHHHHHHHHHHH
Q 041217 147 TNLGILFDEWRAEV 160 (383)
Q Consensus 147 ~~~~~ll~~l~~~l 160 (383)
+.-+.-+.+||+++
T Consensus 77 TASa~al~~LR~~~ 90 (269)
T COG0796 77 TASAVALEDLREKF 90 (269)
T ss_pred hHHHHHHHHHHHhC
Confidence 33457788888887
No 168
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=23.72 E-value=7.3e+02 Score=25.83 Aligned_cols=127 Identities=13% Similarity=0.022 Sum_probs=65.6
Q ss_pred CchhhHHHHHHHHHHHhhhhcccCCCCcEEEEEecC-CC-----------CCCCCCCCCCCCcEEEEEEEEEe-----CC
Q 041217 1 MACKTMILFLLLLFCLPLNLHCTSSTSWIKGGYWTS-RS-----------ELPVSQINSGLFTHLTCAFAYLN-----SS 63 (383)
Q Consensus 1 M~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~Y~~~-~~-----------~~~~~~i~~~~~thii~~~~~~~-----~~ 63 (383)
|..+...+......+|+-.+- ....+..|.||.+. |. +.++.--....+.||||-.+... .+
T Consensus 405 M~~r~~~vA~~~a~iLa~aL~-~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRlN~l~hiiyk~ad~~wr~~r~~ 483 (600)
T TIGR01651 405 MRGRPITVAATCADILARTLE-RCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRLNDLRHIIYKSADAPWRRARRN 483 (600)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HCCCCeEEEeecccccccccchHHHHhcCCCCCCcccchhhhhhhhccccchhhhccc
Confidence 544444444444555555444 33667788888875 11 11112111234779998755322 01
Q ss_pred CcEEE-----eCCcchhhHHHHHHHHHhcCCCceEEEEEecCCc-cchh-hhcCchhHHHHHHHHHHHHHHc
Q 041217 64 TFTLY-----INSTYEKSFSSFTNTVKRKNPSVVTLLSIRGGTA-IFSS-MVNQSSNRKSFIESSIETARLY 128 (383)
Q Consensus 64 ~~~~~-----~~~~~~~~~~~~~~~lk~~~p~~kvllsigg~~~-~~~~-~~~~~~~r~~f~~~i~~~l~~~ 128 (383)
.+.+- -.+.+-..+....+.|.++.-.-|+|+-|..... .-.. .+.+...-++-.+.+++.+.+.
T Consensus 484 l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~~~e~~ 555 (600)
T TIGR01651 484 LGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIETR 555 (600)
T ss_pred hhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCCCcCCccccccCchhHHHHHHHHHHHHHhcc
Confidence 11110 0111122233334456666667899999987666 3333 3333345566677777777774
No 169
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=23.59 E-value=3.7e+02 Score=21.18 Aligned_cols=65 Identities=6% Similarity=0.188 Sum_probs=39.3
Q ss_pred EEEeCCCcEEEeCCcc--hhhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEE
Q 041217 58 AYLNSSTFTLYINSTY--EKSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDL 135 (383)
Q Consensus 58 ~~~~~~~~~~~~~~~~--~~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 135 (383)
+.++.+| .+.+.+.. ...+...++.+++++|...|.+.. |.+..-.-+-.+++.+++.|+.-|.+
T Consensus 52 i~I~~~g-~~~~~~~~v~~~~L~~~l~~~~~~~~~~~v~I~a------------D~~~~~~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 52 VSVKADL-SLFVGNDPVARETLGTALDALTEGDKDTTIFFRA------------DKTVDYGDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred EEEeCCC-CEEECCccCCHHHHHHHHHHHHhcCCCceEEEEc------------CCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4666665 56655442 223333344456677877666553 23334456668999999999876655
No 170
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.18 E-value=2.7e+02 Score=24.82 Aligned_cols=78 Identities=6% Similarity=0.014 Sum_probs=49.1
Q ss_pred cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCC
Q 041217 103 IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLP 182 (383)
Q Consensus 103 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 182 (383)
+...|+.++ +++++ .+.+.|.|=|-+..|-. ....++++.+|+. +....+++.|..
T Consensus 62 dvHLMv~~p---~~~i~----~~~~~gad~i~~H~Ea~------~~~~~~l~~ik~~-----------g~k~GlalnP~T 117 (220)
T PRK08883 62 DVHLMVKPV---DRIIP----DFAKAGASMITFHVEAS------EHVDRTLQLIKEH-----------GCQAGVVLNPAT 117 (220)
T ss_pred EEEeccCCH---HHHHH----HHHHhCCCEEEEcccCc------ccHHHHHHHHHHc-----------CCcEEEEeCCCC
Confidence 446677666 44554 44456999999999922 2345666666652 234555665432
Q ss_pred ccccCCCChhhhhccccEEEeeeccC
Q 041217 183 AIDSVTYPIDSMLRNLDWVHVRAYDY 208 (383)
Q Consensus 183 ~~~~~~~~~~~l~~~vD~v~lm~yd~ 208 (383)
.. -.+..+.+.+|.|.+|+-+.
T Consensus 118 p~----~~i~~~l~~~D~vlvMtV~P 139 (220)
T PRK08883 118 PL----HHLEYIMDKVDLILLMSVNP 139 (220)
T ss_pred CH----HHHHHHHHhCCeEEEEEecC
Confidence 22 13567888999999999763
No 171
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=23.14 E-value=1.3e+02 Score=27.59 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=23.8
Q ss_pred EEEeeeccCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCC-CCCcEEE
Q 041217 200 WVHVRAYDYYLPSRDNFTGAHSALYSSSSWFNTNDSIREWLKTGF-PANKLVL 251 (383)
Q Consensus 200 ~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~~~~~gv-p~~Kivl 251 (383)
-+|+|+||+.|.. ..+|-++-.. -...++.+. .|++..- +.++|+|
T Consensus 88 n~nv~~~DYSGyG--~S~G~psE~n---~y~Di~avy-e~Lr~~~g~~~~Iil 134 (258)
T KOG1552|consen 88 NCNVVSYDYSGYG--RSSGKPSERN---LYADIKAVY-EWLRNRYGSPERIIL 134 (258)
T ss_pred cceEEEEeccccc--ccCCCccccc---chhhHHHHH-HHHHhhcCCCceEEE
Confidence 4799999998752 2233322210 012444444 4544333 6777764
No 172
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=22.72 E-value=3e+02 Score=25.38 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHH
Q 041217 120 SSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWR 157 (383)
Q Consensus 120 ~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~ 157 (383)
.+++.+...|||.|-||.|+.. -+.+....+++..+
T Consensus 30 ~~~E~~a~~GfD~v~iD~EHg~--~~~~~l~~~i~a~~ 65 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDGEHAP--NTIQDLYHQLQAIA 65 (267)
T ss_pred HHHHHHHHcCCCEEEEccccCC--CCHHHHHHHHHHHH
Confidence 4566677889999999999763 34445555555554
No 173
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=22.57 E-value=1.6e+02 Score=26.60 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHH
Q 041217 75 KSFSSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFD 154 (383)
Q Consensus 75 ~~~~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~ 154 (383)
..+++.++.+|++ ++ .++.||+ -|..++ .+..++.-++.+++.|||.|+|.=-... -..+...++++
T Consensus 41 ~~l~eki~la~~~--~V--~v~~GGt--l~E~~~-----~q~~~~~Yl~~~k~lGf~~IEiS~G~~~--i~~~~~~rlI~ 107 (237)
T TIGR03849 41 DIVKEKIEMYKDY--GI--KVYPGGT--LFEIAH-----SKGKFDEYLNECDELGFEAVEISDGSME--ISLEERCNLIE 107 (237)
T ss_pred HHHHHHHHHHHHc--CC--eEeCCcc--HHHHHH-----HhhhHHHHHHHHHHcCCCEEEEcCCccC--CCHHHHHHHHH
Confidence 3566777656655 45 5567775 333333 3456777888999999999999643221 22233445555
Q ss_pred HHH
Q 041217 155 EWR 157 (383)
Q Consensus 155 ~l~ 157 (383)
.++
T Consensus 108 ~~~ 110 (237)
T TIGR03849 108 RAK 110 (237)
T ss_pred HHH
Confidence 554
No 174
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=22.44 E-value=6.8e+02 Score=23.85 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCccchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCC-----CcchhhHHHH
Q 041217 78 SSFTNTVKRKNPSVVTLLSIRGGTAIFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSK-----STNMTNLGIL 152 (383)
Q Consensus 78 ~~~~~~lk~~~p~~kvllsigg~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----~~~~~~~~~l 152 (383)
..+++.+++...++.+.++||+... ......-+.|++.+-++ .. ..|.++|+.--|.. .++.+.+.++
T Consensus 122 ~~~l~~i~~~~~~~~i~vsi~~~~~-----~~~~~~~~dy~~~~~~~-~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i 194 (335)
T TIGR01036 122 DVLVERLKRARYKGPIGINIGKNKD-----TPSEDAKEDYAACLRKL-GP-LADYLVVNVSSPNTPGLRDLQYKAELRDL 194 (335)
T ss_pred HHHHHHHhhccCCCcEEEEEeCCCC-----CCcccCHHHHHHHHHHH-hh-hCCEEEEEccCCCCCCcccccCHHHHHHH
Confidence 4445555555557889999987421 01122335565544444 33 38999999865542 2455677888
Q ss_pred HHHHHHHHH
Q 041217 153 FDEWRAEVT 161 (383)
Q Consensus 153 l~~l~~~l~ 161 (383)
++.+++...
T Consensus 195 ~~~V~~~~~ 203 (335)
T TIGR01036 195 LTAVKQEQD 203 (335)
T ss_pred HHHHHHHHH
Confidence 888888765
No 175
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=22.21 E-value=1.6e+02 Score=21.74 Aligned_cols=52 Identities=10% Similarity=-0.011 Sum_probs=27.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhh-ccccEEEeeec
Q 041217 145 NMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSML-RNLDWVHVRAY 206 (383)
Q Consensus 145 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~-~~vD~v~lm~y 206 (383)
..+.+..+++++.+.+++.. +.-.|++..-.. . ...+..+. +.+|++.+..|
T Consensus 36 ~~~~~~~~l~~~~~~iR~~d-----P~~pvt~g~~~~--~---~~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 36 KAEAYAEWLKEAFRWIRAVD-----PSQPVTSGFWGG--D---WEDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp TSHHHHHHHHHHHHHHHTT------TTS-EE--B--S------TTHHHHS--TT-SSEEB-EE
T ss_pred hHHHHHHHHHHHHHHHHHhC-----CCCcEEeecccC--C---HHHHHHhchhcCCEEeeecC
Confidence 35678899999999998764 233455544321 1 11245555 78899887665
No 176
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.20 E-value=3.5e+02 Score=23.36 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEE--ecCCccchhh-hcCchhHHHHHHHHHHHHHHcCCCeEEE
Q 041217 74 EKSFSSFTNTVKRKNPSVVTLLSI--RGGTAIFSSM-VNQSSNRKSFIESSIETARLYGFQGLDL 135 (383)
Q Consensus 74 ~~~~~~~~~~lk~~~p~~kvllsi--gg~~~~~~~~-~~~~~~r~~f~~~i~~~l~~~~~DGidi 135 (383)
......|++.+|+++|++.|++.= .-....+..- ....+...+.++.+++-+++.|-..|.+
T Consensus 77 ~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~ 141 (178)
T PF14606_consen 77 RERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYY 141 (178)
T ss_dssp HHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 445677888999999999888543 2111122221 1122444566667777777766655544
No 177
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=21.81 E-value=83 Score=22.98 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=24.8
Q ss_pred chhhhcCchhHHHHHHHHHHHHHHcCCC
Q 041217 104 FSSMVNQSSNRKSFIESSIETARLYGFQ 131 (383)
Q Consensus 104 ~~~~~~~~~~r~~f~~~i~~~l~~~~~D 131 (383)
+..+..+++.|++|.++=-.++++|+++
T Consensus 9 ~~~~~~~~~~re~f~~dp~a~~~~~~Lt 36 (77)
T cd07321 9 LEQLLVKPEVKERFKADPEAVLAEYGLT 36 (77)
T ss_pred HHHHhcCHHHHHHHHhCHHHHHHHcCCC
Confidence 5567788999999999999999999875
No 178
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=21.73 E-value=3.8e+02 Score=23.53 Aligned_cols=77 Identities=10% Similarity=0.145 Sum_probs=49.2
Q ss_pred cchhhhcCchhHHHHHHHHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCC
Q 041217 103 IFSSMVNQSSNRKSFIESSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLP 182 (383)
Q Consensus 103 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 182 (383)
+...|+.+|+ +++. -+.+-|.+.+-|.+|.. ++ ...+++.+|+. +...-+++-|..
T Consensus 68 D~HmMV~~Pe---q~V~----~~a~agas~~tfH~E~~---q~---~~~lv~~ir~~-----------Gmk~G~alkPgT 123 (224)
T KOG3111|consen 68 DVHMMVENPE---QWVD----QMAKAGASLFTFHYEAT---QK---PAELVEKIREK-----------GMKVGLALKPGT 123 (224)
T ss_pred eEEEeecCHH---HHHH----HHHhcCcceEEEEEeec---cC---HHHHHHHHHHc-----------CCeeeEEeCCCC
Confidence 4566677773 3443 34556999999999932 11 45666666553 346777776543
Q ss_pred ccccCCCChhhhhccccEEEeeecc
Q 041217 183 AIDSVTYPIDSMLRNLDWVHVRAYD 207 (383)
Q Consensus 183 ~~~~~~~~~~~l~~~vD~v~lm~yd 207 (383)
... ++....+.+|++.|||-.
T Consensus 124 ~Ve----~~~~~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 124 PVE----DLEPLAEHVDMVLVMTVE 144 (224)
T ss_pred cHH----HHHHhhccccEEEEEEec
Confidence 332 345667789999999974
No 179
>PF07833 Cu_amine_oxidN1: Copper amine oxidase N-terminal domain; InterPro: IPR012854 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents a domain found at the N-terminal of certain copper amine oxidases, as well as in related proteins such as cell wall hydrolase and N-acetylmuramoyl-L-alanine amidase. This domain consists of a five-stranded antiparallel beta-sheet twisted around an alpha helix [, ]. ; PDB: 1SPU_A 2WGQ_A 2WO0_A 1JRQ_A 1QAF_B 1D6U_B 1QAL_A 2WOF_A 1OAC_B 1QAK_A ....
Probab=21.33 E-value=2.6e+02 Score=20.33 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.0
Q ss_pred cccHHHHHHHHhhCCCceEEEEcCCceeeEEEeCCEEEEe
Q 041217 284 SMGYKSIKAFIRDYGYGVASLYNDSYDVNFFSSGKNWINF 323 (383)
Q Consensus 284 ~~~y~ei~~~~~~~~~~~~~~~D~~~~~~y~~~~~~~i~y 323 (383)
.++..++++.+ | +...||+.+++..+..++..+.+
T Consensus 6 ~vPl~~i~~~l---g--~~v~~d~~~~~v~i~~~~~~i~~ 40 (93)
T PF07833_consen 6 YVPLRFIAEAL---G--AKVSWDNKTKTVTITKGKKSIKL 40 (93)
T ss_dssp EEEHHHHHHHH---T---EEEEETTTTEEEEEETTEEEEE
T ss_pred EEEHHHHHHHc---C--CEEEEEcCCcEEEEEeeeceeee
Confidence 57888898877 4 78999999988888766554443
No 180
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=21.17 E-value=3.5e+02 Score=24.62 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHH
Q 041217 120 SSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEW 156 (383)
Q Consensus 120 ~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l 156 (383)
.+++.+...|||.|-||.|+..- +.+.+..+++..
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~--~~~~~~~~~~a~ 58 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPN--DVLTFIPQLMAL 58 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCC--CHHHHHHHHHHH
Confidence 45667778899999999997643 444455555544
No 181
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=21.10 E-value=4.5e+02 Score=24.52 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeccCC-------C---CCcchhhHHHHHHHHHHHHHHH
Q 041217 115 KSFIESSIETARLYGFQGLDLSGVLP-------S---KSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 115 ~~f~~~i~~~l~~~~~DGidiD~e~~-------~---~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
+..+.+-.+-|.+.|||||-||+--+ . ..........|+.++++...+.
T Consensus 125 kdii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~ 183 (300)
T COG2342 125 KDIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAA 183 (300)
T ss_pred HHHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhc
Confidence 34555666667778999999997311 1 1244556778888888877653
No 182
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=21.01 E-value=3.4e+02 Score=24.79 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHH
Q 041217 120 SSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEW 156 (383)
Q Consensus 120 ~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l 156 (383)
.+++.+...|||.|-||.|+..- +.+....+++..
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~~--~~~~~~~~i~a~ 65 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAPN--DVSTFIPQLMAL 65 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCCC--CHHHHHHHHHHH
Confidence 55677778899999999997643 444455555544
No 183
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=20.85 E-value=2.5e+02 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=26.3
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEEecc
Q 041217 110 QSSNRKSFIESSIETARLYGFQGLDLSGV 138 (383)
Q Consensus 110 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e 138 (383)
..+.|..-+++.++|.+.+++-||.++.+
T Consensus 223 ~~d~r~~Si~~Av~fA~~~nL~Giv~~~~ 251 (300)
T cd08578 223 EADPRSRSIKEAVRFAKNNNLLGLILPYS 251 (300)
T ss_pred ccCchhhhHHHHHHHHHHcCCcEEEecHH
Confidence 35678899999999999999999999887
No 184
>PLN02334 ribulose-phosphate 3-epimerase
Probab=20.48 E-value=5e+02 Score=23.04 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=38.0
Q ss_pred HHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHHHHHHHHHhhccCCcceEEEEEecCCCccccCCCChhhhhcc--cc
Q 041217 122 IETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEWRAEVTSEARNSGNSQLLLVMKSHHLPAIDSVTYPIDSMLRN--LD 199 (383)
Q Consensus 122 ~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~--vD 199 (383)
++.+.+.|.|||-+..|. .. .......+++++.. +..+.+++.+.... . ....+.+. +|
T Consensus 81 ~~~~~~~gad~v~vH~~q-~~---~d~~~~~~~~i~~~-----------g~~iGls~~~~t~~-~---~~~~~~~~~~~D 141 (229)
T PLN02334 81 VPDFAKAGASIFTFHIEQ-AS---TIHLHRLIQQIKSA-----------GMKAGVVLNPGTPV-E---AVEPVVEKGLVD 141 (229)
T ss_pred HHHHHHcCCCEEEEeecc-cc---chhHHHHHHHHHHC-----------CCeEEEEECCCCCH-H---HHHHHHhccCCC
Confidence 445567799999888884 11 12233444444331 34566665421111 1 23556677 99
Q ss_pred EEEeeecc
Q 041217 200 WVHVRAYD 207 (383)
Q Consensus 200 ~v~lm~yd 207 (383)
++.+|+..
T Consensus 142 yi~~~~v~ 149 (229)
T PLN02334 142 MVLVMSVE 149 (229)
T ss_pred EEEEEEEe
Confidence 99999874
No 185
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=20.45 E-value=3.8e+02 Score=23.82 Aligned_cols=97 Identities=9% Similarity=0.047 Sum_probs=47.1
Q ss_pred EEEEeCCCcEEEeCCcchh--hHHHHHHHHHhcCCCc--eEEEEEecCCc--cchh-----------hhcCchhHHHHHH
Q 041217 57 FAYLNSSTFTLYINSTYEK--SFSSFTNTVKRKNPSV--VTLLSIRGGTA--IFSS-----------MVNQSSNRKSFIE 119 (383)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~lk~~~p~~--kvllsigg~~~--~~~~-----------~~~~~~~r~~f~~ 119 (383)
|+++... .-.|.|+... ..+.+++.+......- ++++.+||.-. .+.. ++.+-....-=-+
T Consensus 94 FvEIGSt--e~eW~d~~a~~~vA~avl~~~~~~~~~~~~~~~ig~GG~HYapr~t~~~l~~~~~~GHi~~ky~l~~l~~~ 171 (213)
T PF04414_consen 94 FVEIGST--EEEWNDPDAAEAVARAVLEVLESDEKAECCPVAIGFGGGHYAPRFTKLALETEYAFGHIIPKYALDELDED 171 (213)
T ss_dssp EEEEEES--HHHHT-HHHHHHHHHHHHHHHHHTTCSTT-EEEEEE-S-TT-HHHHHHHHHCSEEEEEEE-GGGGGG--HH
T ss_pred EEEeCCC--HHHhCChHHHHHHHHHHHHHhcccccccccceeEEecCcccchhhhhhhhcCCeEEEeeccCcchhhcCHH
Confidence 4555543 2334444222 2344444344332222 89999999543 2332 2222211111123
Q ss_pred HHHHHHHHcCCCeEEEeccCCCCCcchhhHHHHHHHH
Q 041217 120 SSIETARLYGFQGLDLSGVLPSKSTNMTNLGILFDEW 156 (383)
Q Consensus 120 ~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ll~~l 156 (383)
-+.+.+++.+.+-+-|||....+ .++..+..+++++
T Consensus 172 ~l~~a~~~s~~~~a~id~K~l~~-~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 172 VLRQAIEKSGADVAIIDWKSLKS-EDRRRIEELLEEL 207 (213)
T ss_dssp HHHHHHCHCT-SEEEEETTTS-H-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHHHHHc
Confidence 34456666788999999985544 6666666666665
No 186
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=20.31 E-value=4.1e+02 Score=24.80 Aligned_cols=29 Identities=7% Similarity=0.022 Sum_probs=20.4
Q ss_pred cCchhHHHHHHHHHHHHHHcCCCeEEEecc
Q 041217 109 NQSSNRKSFIESSIETARLYGFQGLDLSGV 138 (383)
Q Consensus 109 ~~~~~r~~f~~~i~~~l~~~~~DGidiD~e 138 (383)
.+++.|+-+ .+.++-+.+.|+||+-+|+.
T Consensus 130 tnp~a~~w~-~~~~~~~~~~Gid~~~~D~~ 158 (308)
T cd06593 130 TNPDACKWY-KDKLKPLLDMGVDCFKTDFG 158 (308)
T ss_pred CCHHHHHHH-HHHHHHHHHhCCcEEecCCC
Confidence 456667555 45555666789999999984
No 187
>PRK12677 xylose isomerase; Provisional
Probab=20.29 E-value=2.9e+02 Score=27.00 Aligned_cols=45 Identities=9% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCeEEEecc--CCCCCcchhhHHHHHHHHHHHHHHH
Q 041217 118 IESSIETARLYGFQGLDLSGV--LPSKSTNMTNLGILFDEWRAEVTSE 163 (383)
Q Consensus 118 ~~~i~~~l~~~~~DGidiD~e--~~~~~~~~~~~~~ll~~l~~~l~~~ 163 (383)
...+++.+.+.||+||++..+ .|-.... ..-...++++++.+.+.
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~-~~~~~~~~~lk~~l~~~ 79 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGATD-AERDRIIKRFKKALDET 79 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCCh-hhhHHHHHHHHHHHHHc
Confidence 457888999999999999754 2221111 11124677888888764
No 188
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=20.25 E-value=1.2e+02 Score=22.33 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=11.0
Q ss_pred CchhhHHHHHHH-HHHHhhhh
Q 041217 1 MACKTMILFLLL-LFCLPLNL 20 (383)
Q Consensus 1 M~~~~~~~~l~~-~~~l~~~~ 20 (383)
|++|..|+-|+. +|++++.+
T Consensus 1 MaRRlwiLslLAVtLtVALAA 21 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAA 21 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhc
Confidence 788876654443 34444433
No 189
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=20.10 E-value=6.6e+02 Score=22.78 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=28.2
Q ss_pred CCcEEEecccceeeeeecCCCCCCCCCCCcCCCCCCCCcccHHHHHHHHhh
Q 041217 246 ANKLVLGLPYHGYAWQLVNPNENAVGAPAAGPAITMDGSMGYKSIKAFIRD 296 (383)
Q Consensus 246 ~~Kivlglp~yG~~~~~~~~~~~~~~~~~~g~~~~~~g~~~y~ei~~~~~~ 296 (383)
..-|.+++.-.|+.=++..+-...+-.-........+|+++..++.++++.
T Consensus 198 ~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~sAPGQ~~~~el~~i~~~ 248 (253)
T PRK02412 198 QPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVEDLRRILEI 248 (253)
T ss_pred CCEEEEeCCCCchHHHcchhhhCCcceecCCCCCCCCCCCCHHHHHHHHHH
Confidence 345677777777666665543211111011112235788999998887654
Done!