Query 041218
Match_columns 174
No_of_seqs 174 out of 1152
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.9 8E-23 1.7E-27 171.4 20.1 165 2-173 17-253 (358)
2 PRK11272 putative DMT superfam 99.8 4.2E-17 9.2E-22 133.1 18.6 149 2-163 12-201 (292)
3 TIGR00950 2A78 Carboxylate/Ami 99.7 1.8E-15 3.9E-20 120.6 17.2 141 10-164 1-183 (260)
4 TIGR00817 tpt Tpt phosphate/ph 99.6 1.8E-14 3.9E-19 117.9 18.0 142 12-163 16-199 (302)
5 PRK10532 threonine and homoser 99.6 3.2E-14 6.9E-19 116.3 18.6 146 2-162 16-198 (293)
6 PRK11453 O-acetylserine/cystei 99.6 3.2E-14 7E-19 116.5 18.5 144 3-163 9-198 (299)
7 TIGR00688 rarD rarD protein. T 99.6 5.2E-14 1.1E-18 112.6 17.2 120 2-124 6-166 (256)
8 PRK11689 aromatic amino acid e 99.6 4.4E-14 9.4E-19 115.6 16.6 102 2-112 8-113 (295)
9 PRK15430 putative chlorampheni 99.6 8.5E-14 1.9E-18 113.9 16.5 144 3-155 13-195 (296)
10 PTZ00343 triose or hexose phos 99.5 5.6E-12 1.2E-16 105.7 18.7 142 12-163 63-253 (350)
11 PF00892 EamA: EamA-like trans 99.4 1.5E-11 3.3E-16 86.8 11.0 100 8-110 1-100 (126)
12 TIGR03340 phn_DUF6 phosphonate 99.2 1.4E-09 3.1E-14 88.2 16.3 106 3-112 6-111 (281)
13 PF06027 DUF914: Eukaryotic pr 99.0 1E-07 2.3E-12 79.4 17.8 149 8-164 23-221 (334)
14 COG0697 RhaT Permeases of the 99.0 1.6E-07 3.5E-12 75.0 18.4 135 3-148 12-191 (292)
15 TIGR00950 2A78 Carboxylate/Ami 98.9 4.4E-08 9.6E-13 78.0 13.9 105 3-111 133-239 (260)
16 COG5006 rhtA Threonine/homoser 98.8 1.2E-07 2.6E-12 75.3 13.5 135 13-161 27-198 (292)
17 PRK10532 threonine and homoser 98.7 1.7E-06 3.7E-11 70.7 16.3 103 3-110 153-255 (293)
18 COG2510 Predicted membrane pro 98.6 4.1E-07 8.9E-12 65.3 9.1 106 4-111 9-114 (140)
19 PRK11272 putative DMT superfam 98.5 9.3E-06 2E-10 66.3 15.5 106 3-111 155-260 (292)
20 PF13536 EmrE: Multidrug resis 98.4 7.5E-06 1.6E-10 57.7 10.2 79 32-111 2-81 (113)
21 TIGR00776 RhaT RhaT L-rhamnose 98.3 4.3E-05 9.4E-10 62.5 14.9 97 3-110 6-106 (290)
22 PRK11689 aromatic amino acid e 98.3 1.9E-05 4.2E-10 64.5 12.1 102 3-111 161-262 (295)
23 PLN00411 nodulin MtN21 family 98.2 8E-05 1.7E-09 62.9 15.6 107 3-112 194-304 (358)
24 PRK11453 O-acetylserine/cystei 98.2 0.00012 2.6E-09 59.9 15.7 109 3-112 148-263 (299)
25 TIGR00817 tpt Tpt phosphate/ph 98.2 1.5E-05 3.3E-10 65.1 10.2 109 3-112 150-269 (302)
26 COG2962 RarD Predicted permeas 98.2 0.0003 6.5E-09 57.2 16.5 106 4-112 13-120 (293)
27 TIGR00688 rarD rarD protein. T 97.8 0.0006 1.3E-08 54.4 12.8 101 3-111 151-255 (256)
28 KOG1441 Glucose-6-phosphate/ph 97.7 0.0014 3.1E-08 54.4 13.9 142 15-165 34-222 (316)
29 TIGR03340 phn_DUF6 phosphonate 97.7 0.00015 3.2E-09 58.8 8.0 106 3-111 149-258 (281)
30 PTZ00343 triose or hexose phos 97.6 0.0033 7.3E-08 52.8 13.8 109 3-111 199-323 (350)
31 PF08449 UAA: UAA transporter 97.5 0.02 4.2E-07 47.0 17.6 138 12-160 14-205 (303)
32 PRK15430 putative chlorampheni 97.5 0.0093 2E-07 48.7 15.3 105 3-111 154-260 (296)
33 PF03151 TPT: Triose-phosphate 97.5 0.0071 1.5E-07 44.1 13.0 108 3-111 5-128 (153)
34 COG0697 RhaT Permeases of the 97.3 0.011 2.3E-07 47.0 13.7 102 3-110 159-261 (292)
35 KOG4510 Permease of the drug/m 97.2 0.00023 4.9E-09 57.5 2.7 99 7-112 46-145 (346)
36 TIGR00776 RhaT RhaT L-rhamnose 96.6 0.041 8.9E-07 45.0 11.4 97 4-110 158-258 (290)
37 COG5006 rhtA Threonine/homoser 96.5 0.042 9.1E-07 44.3 10.1 105 4-112 154-258 (292)
38 KOG2765 Predicted membrane pro 96.0 0.09 1.9E-06 44.5 10.0 80 75-160 170-300 (416)
39 KOG3912 Predicted integral mem 96.0 0.61 1.3E-05 38.4 14.3 138 11-158 16-225 (372)
40 PF06027 DUF914: Eukaryotic pr 95.0 0.26 5.6E-06 41.4 9.4 106 2-110 172-279 (334)
41 PF04142 Nuc_sug_transp: Nucle 94.6 1.4 3E-05 35.3 12.5 53 59-112 13-65 (244)
42 KOG1443 Predicted integral mem 94.4 0.44 9.6E-06 39.5 9.2 55 57-112 77-132 (349)
43 PRK15051 4-amino-4-deoxy-L-ara 94.2 1.1 2.3E-05 31.5 9.9 44 68-111 41-84 (111)
44 PF00892 EamA: EamA-like trans 94.1 0.085 1.8E-06 36.4 4.0 43 114-164 1-43 (126)
45 KOG1444 Nucleotide-sugar trans 92.4 5.1 0.00011 33.3 12.3 104 5-112 15-125 (314)
46 KOG2766 Predicted membrane pro 89.9 1.7 3.7E-05 35.4 7.1 127 23-164 43-218 (336)
47 PF08449 UAA: UAA transporter 89.6 10 0.00022 31.0 12.2 108 3-111 159-272 (303)
48 KOG4510 Permease of the drug/m 88.9 0.5 1.1E-05 38.6 3.4 102 6-111 199-300 (346)
49 PRK02971 4-amino-4-deoxy-L-ara 86.8 4.1 8.8E-05 29.4 6.9 44 66-109 50-93 (129)
50 COG2962 RarD Predicted permeas 85.2 20 0.00043 29.6 14.4 104 5-112 155-259 (293)
51 KOG4314 Predicted carbohydrate 83.1 9.7 0.00021 30.0 7.8 38 75-112 64-101 (290)
52 PF03151 TPT: Triose-phosphate 82.1 4.7 0.0001 28.9 5.6 47 113-165 9-61 (153)
53 KOG2234 Predicted UDP-galactos 80.3 35 0.00076 28.9 18.0 110 2-112 19-140 (345)
54 KOG1441 Glucose-6-phosphate/ph 72.4 46 0.001 27.8 9.4 89 5-95 170-266 (316)
55 PF04657 DUF606: Protein of un 69.6 40 0.00087 24.4 11.0 71 26-99 29-99 (138)
56 PRK11056 hypothetical protein; 58.5 65 0.0014 23.0 7.3 44 58-111 7-50 (120)
57 COG5202 Predicted membrane pro 57.4 1.3E+02 0.0027 26.0 12.6 40 113-157 137-185 (512)
58 PF10639 UPF0546: Uncharacteri 55.0 72 0.0016 22.5 6.4 87 3-110 1-88 (113)
59 COG3086 RseC Positive regulato 54.4 42 0.00092 24.8 5.2 29 83-111 67-95 (150)
60 PF07226 DUF1422: Protein of u 49.5 93 0.002 22.1 7.2 43 58-110 7-49 (117)
61 COG5070 VRG4 Nucleotide-sugar 48.9 1.4E+02 0.0031 24.1 10.0 124 28-163 38-209 (309)
62 PF06800 Sugar_transport: Suga 48.8 1.4E+02 0.0031 24.3 8.0 99 2-109 142-240 (269)
63 PF04246 RseC_MucC: Positive r 46.1 58 0.0013 23.2 5.0 28 84-111 61-88 (135)
64 PF11460 DUF3007: Protein of u 45.0 89 0.0019 21.7 5.4 42 71-112 15-56 (104)
65 PRK10862 SoxR reducing system 44.8 63 0.0014 23.9 5.0 28 83-110 67-94 (154)
66 KOG2765 Predicted membrane pro 41.1 1.3E+02 0.0029 25.9 6.9 100 4-104 253-359 (416)
67 PF00893 Multi_Drug_Res: Small 26.8 1.9E+02 0.0042 19.1 5.7 42 70-111 35-77 (93)
68 KOG1442 GDP-fucose transporter 23.4 2.5E+02 0.0054 23.4 5.5 44 113-162 194-238 (347)
69 COG4139 BtuC ABC-type cobalami 21.4 4.5E+02 0.0097 21.3 7.1 58 19-79 105-162 (326)
70 KOG3817 Uncharacterized conser 20.9 5.5E+02 0.012 22.2 8.6 83 9-100 200-287 (452)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.91 E-value=8e-23 Score=171.36 Aligned_cols=165 Identities=25% Similarity=0.424 Sum_probs=140.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218 2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF 81 (174)
Q Consensus 2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~ 81 (174)
+|+..|+..++..++.|.+++.|++|+.+.++|+.+|+++++++++.++|+++.++.++|++.+++++|++| ..++.++
T Consensus 17 ~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~~~~~~~ 95 (358)
T PLN00411 17 AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-SMYVITG 95 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-HHHHHHH
Confidence 689999999999999999999999999999999999999999998776553332445678999999999999 7888899
Q ss_pred HhHhhcchhhHHHHhhhhHHHHHHHHHHHH-------H------------------------------------------
Q 041218 82 YEGLYLASSTMGTAMGNLIPAITFVLAAIV-------G------------------------------------------ 112 (174)
Q Consensus 82 ~~gl~~t~a~~asil~~~~Pv~~~lla~~~-------~------------------------------------------ 112 (174)
+.|++|++|++++++.+++|++++++++++ +
T Consensus 96 ~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~ 175 (358)
T PLN00411 96 YIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQ 175 (358)
T ss_pred HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccc
Confidence 999999999999999999999999998866 2
Q ss_pred ----------------------HHHHhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCCcc
Q 041218 113 ----------------------SCCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPD-PESWA 169 (174)
Q Consensus 113 ----------------------~~~~a~y~i~~~~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~~~~~~~~-~~~w~ 169 (174)
+++||+|++++| +..++||++...++|++.++++.+.+.+...|++ .++|.
T Consensus 176 ~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~------~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (358)
T PLN00411 176 LSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQA------HIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI 249 (358)
T ss_pred cccccCCCcccHHHHHHHHHHHHHHHHHHHHHHH------HHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence 235677888888 8989997556889999999999998888877653 45676
Q ss_pred cCCC
Q 041218 170 LHTN 173 (174)
Q Consensus 170 ~~~~ 173 (174)
.++|
T Consensus 250 ~~~~ 253 (358)
T PLN00411 250 IHFD 253 (358)
T ss_pred eccc
Confidence 6655
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.77 E-value=4.2e-17 Score=133.09 Aligned_cols=149 Identities=12% Similarity=0.162 Sum_probs=125.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218 2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF 81 (174)
Q Consensus 2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~ 81 (174)
.++...++||.+++++|...+ ++||.+++++|+.+++++++++...++ + + +.++|++.+....|.++...++.++
T Consensus 12 ~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~-~-~--~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (292)
T PRK11272 12 ALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLRG-H-P--LPTLRQWLNAALIGLLLLAVGNGMV 86 (292)
T ss_pred HHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHhC-C-C--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999886 699999999999999999988765422 2 2 2246788888899999888889999
Q ss_pred HhHh-hcchhhHHHHhhhhHHHHHHHHHHHHH----------------------------------------HHHHhHHH
Q 041218 82 YEGL-YLASSTMGTAMGNLIPAITFVLAAIVG----------------------------------------SCCWSLWP 120 (174)
Q Consensus 82 ~~gl-~~t~a~~asil~~~~Pv~~~lla~~~~----------------------------------------~~~~a~y~ 120 (174)
+.+. +++++++++++.++.|+++.+++.+++ +++||.|.
T Consensus 87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~ 166 (292)
T PRK11272 87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGS 166 (292)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999987655 89999999
Q ss_pred HHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 041218 121 ILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEP 163 (174)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~~~~~~~ 163 (174)
+..| |..++. +...+++++.+++..+.+.....++
T Consensus 167 ~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (292)
T PRK11272 167 VWSS------RLPLPV--GMMAGAAEMLAAGVVLLIASLLSGE 201 (292)
T ss_pred HHHH------hcCCCc--chHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9998 765433 5678899999999999888776543
No 3
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.70 E-value=1.8e-15 Score=120.63 Aligned_cols=141 Identities=17% Similarity=0.220 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcch
Q 041218 10 YAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLAS 89 (174)
Q Consensus 10 wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~ 89 (174)
||.+++..|..++++.||....+.|+..+.+.+.++... + . +++++.+....|.++..+++.+++.|++|++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~ 72 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRLP 72 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999877999999999999998888776432 1 1 2456778889999999999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHH-----------------------------------------HHHHhHHHHHHhhhcc
Q 041218 90 STMGTAMGNLIPAITFVLAAIVG-----------------------------------------SCCWSLWPILQVLKKS 128 (174)
Q Consensus 90 a~~asil~~~~Pv~~~lla~~~~-----------------------------------------~~~~a~y~i~~~~~~~ 128 (174)
+++++++.++.|+++.+++.++. +++|+.|.+..|
T Consensus 73 ~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k---- 148 (260)
T TIGR00950 73 VGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYK---- 148 (260)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHh----
Confidence 99999999999999999998753 899999999999
Q ss_pred hhhhhhhcC-chhHHHHHHHHHHHHHHHHHHHHhCCC
Q 041218 129 SNSLLKTNC-VSVSLTVCMGFFATIQSAIVTLFLEPD 164 (174)
Q Consensus 129 ~~~~~~~~~-~~l~~t~~~~l~g~~~~~~~~~~~~~~ 164 (174)
+..++++ ++...+.+++.++++.+.+.....+++
T Consensus 149 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (260)
T TIGR00950 149 --RLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN 183 (260)
T ss_pred --HHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8877764 245666688999999998888776543
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.65 E-value=1.8e-14 Score=117.91 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhh
Q 041218 12 GVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASST 91 (174)
Q Consensus 12 ~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~ 91 (174)
+..+..|.++++--+|..+.+.|+.++++.+.+. +..+.+++ ++.+++|+++++.+|+++ +.++.+.+.|++|++++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s 92 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKR-LKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS 92 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCC-CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence 3446789998754679999999999997776554 21122222 456788999999999997 88889999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHH----------------------------------------HHHHhHHHHHHhhhcchhh
Q 041218 92 MGTAMGNLIPAITFVLAAIVG----------------------------------------SCCWSLWPILQVLKKSSNS 131 (174)
Q Consensus 92 ~asil~~~~Pv~~~lla~~~~----------------------------------------~~~~a~y~i~~~~~~~~~~ 131 (174)
+++++.++.|+++.++++++. +++|++|.+..| |
T Consensus 93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k------~ 166 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSK------K 166 (302)
T ss_pred HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 999999999999999998764 899999999999 8
Q ss_pred hhh--hcCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 041218 132 LLK--TNCVSVSLTVCMGFFATIQSAIVTLFLEP 163 (174)
Q Consensus 132 ~~~--~~~~~l~~t~~~~l~g~~~~~~~~~~~~~ 163 (174)
..+ ++ |+..++.|++..|++.++|++...|+
T Consensus 167 ~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~ 199 (302)
T TIGR00817 167 AMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEG 199 (302)
T ss_pred hhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcc
Confidence 887 67 58999999999999999999887663
No 5
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.64 E-value=3.2e-14 Score=116.26 Aligned_cols=146 Identities=12% Similarity=0.156 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218 2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF 81 (174)
Q Consensus 2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~ 81 (174)
.++++.+.|+++..++|.+.++ +||..+.++|+.+|+++++++.. ++++ +.++|++......|++. ...+.++
T Consensus 16 ~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~~---~~~~~~~~~~~~~g~~~-~~~~~~~ 88 (293)
T PRK10532 16 LLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWRL---RFAKEQRLPLLFYGVSL-GGMNYLF 88 (293)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHhc---cCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 4678999999999999999975 99999999999999998887642 2221 23467788888888875 6667889
Q ss_pred HhHhhcchhhHHHHhhhhHHHHHHHHHHH------------HH-------------------------HHHHhHHHHHHh
Q 041218 82 YEGLYLASSTMGTAMGNLIPAITFVLAAI------------VG-------------------------SCCWSLWPILQV 124 (174)
Q Consensus 82 ~~gl~~t~a~~asil~~~~Pv~~~lla~~------------~~-------------------------~~~~a~y~i~~~ 124 (174)
+.|++|++++.++++.++.|+++.+++.- .+ +++|+.|.+..|
T Consensus 89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r 168 (293)
T PRK10532 89 YLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQ 168 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988710 00 899999999999
Q ss_pred hhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhC
Q 041218 125 LKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLE 162 (174)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~~~~~~ 162 (174)
|..++++ +... .++.+++++.+.|+....+
T Consensus 169 ------~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~ 198 (293)
T PRK10532 169 ------RAGAEHG-PATV-AIGSLIAALIFVPIGALQA 198 (293)
T ss_pred ------HHhccCC-chHH-HHHHHHHHHHHHHHHHHcc
Confidence 8887874 6665 5677888888888877654
No 6
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.64 E-value=3.2e-14 Score=116.46 Aligned_cols=144 Identities=15% Similarity=0.150 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY 82 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~ 82 (174)
.+++.++||.+++++|.+++ ++||.++.++|+.++++.++++. .++ +.+++ .....|+++...++.+++
T Consensus 9 ~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~---~~~----~~~~~---~~~~~g~~~~~~~~~~~~ 77 (299)
T PRK11453 9 ALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV---ARP----KVPLN---LLLGYGLTISFGQFAFLF 77 (299)
T ss_pred HHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh---cCC----CCchH---HHHHHHHHHHHHHHHHHH
Confidence 56788999999999999986 49999999999999887766553 111 11222 345557766677777888
Q ss_pred hHhhc-chhhHHHHhhhhHHHHHHHHHHHHH-------------------------------------------HHHHhH
Q 041218 83 EGLYL-ASSTMGTAMGNLIPAITFVLAAIVG-------------------------------------------SCCWSL 118 (174)
Q Consensus 83 ~gl~~-t~a~~asil~~~~Pv~~~lla~~~~-------------------------------------------~~~~a~ 118 (174)
.+++| .++++++++.++.|+++.++++++. +++|+.
T Consensus 78 ~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~ 157 (299)
T PRK11453 78 CAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWAC 157 (299)
T ss_pred HHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 99998 4789999999999999999998763 899999
Q ss_pred HHHHHhhhcchhhhhhhcCc--hhHHHHHHHHHHHHHHHHHHHHhCC
Q 041218 119 WPILQVLKKSSNSLLKTNCV--SVSLTVCMGFFATIQSAIVTLFLEP 163 (174)
Q Consensus 119 y~i~~~~~~~~~~~~~~~~~--~l~~t~~~~l~g~~~~~~~~~~~~~ 163 (174)
|.+++| |..+++++ ....+.++++.+.+.....+...|+
T Consensus 158 ~~v~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (299)
T PRK11453 158 GNIFNK------KIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDG 198 (299)
T ss_pred HHHHHH------HHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999 87766542 3455677888777766655555543
No 7
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.62 E-value=5.2e-14 Score=112.59 Aligned_cols=120 Identities=12% Similarity=0.088 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCCcchhH-HHHHHHHHHHHHHH
Q 041218 2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKS----RIPPLGFKS-FSLIFLTALIVITI 76 (174)
Q Consensus 2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~----~~~~~~~~~-~~~~~~lg~~g~~~ 76 (174)
.++++.++||.+.+++|. .. ++||.++.++|+.+|++++.++...+++++ +.++.++++ +..+...|++ ...
T Consensus 6 ~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~ 82 (256)
T TIGR00688 6 VSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL-IGF 82 (256)
T ss_pred HHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-HHH
Confidence 367888999999999998 44 499999999999999988877654433211 101122233 3344555555 589
Q ss_pred HHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH------------------------------------HHHHhHHH
Q 041218 77 NQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG------------------------------------SCCWSLWP 120 (174)
Q Consensus 77 ~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~------------------------------------~~~~a~y~ 120 (174)
++.+++.+++++++++|+++.++.|+++.++++++. ++||+.|.
T Consensus 83 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~~~~l~aa~~~a~~~ 162 (256)
T TIGR00688 83 NWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLPWEALVLAFSFTAYG 162 (256)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764 78999999
Q ss_pred HHHh
Q 041218 121 ILQV 124 (174)
Q Consensus 121 i~~~ 124 (174)
+..|
T Consensus 163 i~~~ 166 (256)
T TIGR00688 163 LIRK 166 (256)
T ss_pred HHHh
Confidence 9988
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.61 E-value=4.4e-14 Score=115.55 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=79.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218 2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF 81 (174)
Q Consensus 2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~ 81 (174)
.++++.++||+++++.|.++++ +||+.+.++|+.+|+++++++. +++ +.+ ++.++..+.|.++...++.++
T Consensus 8 ~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~----~~~-~~~~~~~~~~~l~~~~~~~~~ 78 (295)
T PRK11689 8 IGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFP----RLR-QFPKRYLLAGGLLFVSYEICL 78 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---ccc----ccc-cccHHHHHHHhHHHHHHHHHH
Confidence 3567889999999999998865 9999999999999999988752 111 111 112234556777788899988
Q ss_pred HhHhhc----chhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 82 YEGLYL----ASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 82 ~~gl~~----t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
+.|++| +++++++++.++.|+++.++++++.
T Consensus 79 ~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~ 113 (295)
T PRK11689 79 ALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFN 113 (295)
T ss_pred HHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHh
Confidence 888865 5778899999999999999987653
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.59 E-value=8.5e-14 Score=113.88 Aligned_cols=144 Identities=10% Similarity=0.025 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC-CC-CcchhHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSR-IP-PLGFKSFSLIFLTALIVITINQNM 80 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~lg~~g~~~~~~~ 80 (174)
++++.++||.+++.+|.. . ++||.++.++|+.+|.+++.++...+++++. .+ ..+++++ .....|.++...++.+
T Consensus 13 ~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 89 (296)
T PRK15430 13 ALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKI-FMLAVSAVLIGGNWLL 89 (296)
T ss_pred HHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHH
Confidence 567889999999999974 4 5999999999999999888877654322111 00 1123443 2345788888999999
Q ss_pred HHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH------------------------------------HHHHhHHHHHHh
Q 041218 81 FYEGLYLASSTMGTAMGNLIPAITFVLAAIVG------------------------------------SCCWSLWPILQV 124 (174)
Q Consensus 81 ~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~------------------------------------~~~~a~y~i~~~ 124 (174)
+++|++++++++++++.++.|+++.++++++. +++||.|.+..|
T Consensus 90 ~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~l~aa~~~a~~~i~~r 169 (296)
T PRK15430 90 FIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRK 169 (296)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988763 889999999888
Q ss_pred hhcchhhhhhhc-CchhHHHHHHHHHHHHHHH
Q 041218 125 LKKSSNSLLKTN-CVSVSLTVCMGFFATIQSA 155 (174)
Q Consensus 125 ~~~~~~~~~~~~-~~~l~~t~~~~l~g~~~~~ 155 (174)
+..++. ++....+.|++.++.....
T Consensus 170 ------~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (296)
T PRK15430 170 ------KIAVEAQTGMLIETMWLLPVAAIYLF 195 (296)
T ss_pred ------hcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 654322 1345566777777766543
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.48 E-value=5.6e-12 Score=105.66 Aligned_cols=142 Identities=14% Similarity=0.079 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc--chhHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 041218 12 GVAVFTGAALLQGMS-PRGSVVYRQAMATLIIAPIAYFSRRKSRIPPL--GFKSFSLIFLTALIVITINQNMFYEGLYLA 88 (174)
Q Consensus 12 ~~~v~~K~~l~~~~~-p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t 88 (174)
...+..|.++++ +| |..+.++|++++.++...+.. .+.+++ ++. .++++..++.+|+++...+.. .+.|++++
T Consensus 63 ~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~llp~gl~~~~~~~~-~~~sl~~~ 138 (350)
T PTZ00343 63 LYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWA-TGFRKI-PRIKSLKLFLKNFLPQGLCHLFVHFG-AVISMGLG 138 (350)
T ss_pred HHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHH-hCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Confidence 345668999876 99 999999999999876554432 222222 233 245788999999999777555 56999999
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHH----------------------------------------HHHHhHHHHHHhhhcc
Q 041218 89 SSTMGTAMGNLIPAITFVLAAIVG----------------------------------------SCCWSLWPILQVLKKS 128 (174)
Q Consensus 89 ~a~~asil~~~~Pv~~~lla~~~~----------------------------------------~~~~a~y~i~~~~~~~ 128 (174)
+++.++++.++.|++++++++++. +++|+.|.++.|
T Consensus 139 svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k---- 214 (350)
T PTZ00343 139 AVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAK---- 214 (350)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 999999999999999999998764 889999999999
Q ss_pred hhhhhhhcC------chhHHHHHHHHHHHHHHHHHHHHhCC
Q 041218 129 SNSLLKTNC------VSVSLTVCMGFFATIQSAIVTLFLEP 163 (174)
Q Consensus 129 ~~~~~~~~~------~~l~~t~~~~l~g~~~~~~~~~~~~~ 163 (174)
|..++++ ++.....++.++|++.++|+....|.
T Consensus 215 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~ 253 (350)
T PTZ00343 215 --KTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG 253 (350)
T ss_pred --HHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776542 35567777899999999999886653
No 11
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.35 E-value=1.5e-11 Score=86.79 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 041218 8 CSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYL 87 (174)
Q Consensus 8 ~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~ 87 (174)
++||.+.+..|...++ +||....++|+.++++ ++++....++++. ++.+.+++......|.++....+.+++.|+++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 77 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALKY 77 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHHh
Confidence 4799999999998875 9999999999999997 6666555554432 35567888899999999889999999999999
Q ss_pred chhhHHHHhhhhHHHHHHHHHHH
Q 041218 88 ASSTMGTAMGNLIPAITFVLAAI 110 (174)
Q Consensus 88 t~a~~asil~~~~Pv~~~lla~~ 110 (174)
+++++++.+.++.|+++.+++++
T Consensus 78 ~~~~~~~~~~~~~pv~~~i~~~~ 100 (126)
T PF00892_consen 78 ISASIVSILQYLSPVFAAILGWL 100 (126)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 12
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.20 E-value=1.4e-09 Score=88.21 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY 82 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~ 82 (174)
.+++.++|+...+.+|...++ -++ ...++...+++++.|+...+.++.. .+..+++++.....+.++...++.+++
T Consensus 6 ~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 6 VVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVG-WSRLPATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred HHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCC-CCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999976654 344 3588888888888887654321111 122234555666777778899999999
Q ss_pred hHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 83 EGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 83 ~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
.|++++++++++.+.++.|+++.++++++.
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~ 111 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTL 111 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999998753
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.96 E-value=1e-07 Score=79.38 Aligned_cols=149 Identities=18% Similarity=0.220 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhh
Q 041218 8 CSYAGVAVFTGAALLQGMS-PRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLY 86 (174)
Q Consensus 8 ~~wg~~~v~~K~~l~~~~~-p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~ 86 (174)
++-.++...+...-+.|.+ |..-.+.-...-.++..+....++++++..+..+++|++.+++|++- ...+++...|.+
T Consensus 23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D-v~aN~~~v~a~~ 101 (334)
T PF06027_consen 23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD-VEANYLVVLAYQ 101 (334)
T ss_pred HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 4556666676665555555 55444444444344444544443332221223356788888899887 466778899999
Q ss_pred cchhhHHHHhhhhHHHHHHHHHHHHH-------------------------------------------------HHHHh
Q 041218 87 LASSTMGTAMGNLIPAITFVLAAIVG-------------------------------------------------SCCWS 117 (174)
Q Consensus 87 ~t~a~~asil~~~~Pv~~~lla~~~~-------------------------------------------------~~~~a 117 (174)
||+.+.+.++..+.-+++++++++++ ++.||
T Consensus 102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya 181 (334)
T PF06027_consen 102 YTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYA 181 (334)
T ss_pred cccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHH
Confidence 99999999999999999999998764 99999
Q ss_pred HHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 041218 118 LWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPD 164 (174)
Q Consensus 118 ~y~i~~~~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~~~~~~~~ 164 (174)
+++++++ +..|++| ...+.++--++|.+.+.+...+.|++
T Consensus 182 ~~nV~~E------~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~ 221 (334)
T PF06027_consen 182 VSNVLEE------KLVKKAP-RVEFLGMLGLFGFIISGIQLAILERS 221 (334)
T ss_pred HHHHHHH------HhcccCC-HHHHHHHHHHHHHHHHHHHHHheehh
Confidence 9999999 9999985 78899999999999998887777764
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.96 E-value=1.6e-07 Score=75.03 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY 82 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~ 82 (174)
+++..+.|+.+....|...+...++......|+.++.....+.... ++..+ +...+++.+..+.+.++...++.+++
T Consensus 12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (292)
T COG0697 12 LLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGL--RPALRPWLLLLLLALLGLALPFLLLF 88 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccc--cccccchHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999987543667777777999998884444321 11111 11223355778888899999999999
Q ss_pred hHhhcchhhHHHHhhhhHHHHHHHHHH-HH-H------------------------------------------HHHHhH
Q 041218 83 EGLYLASSTMGTAMGNLIPAITFVLAA-IV-G------------------------------------------SCCWSL 118 (174)
Q Consensus 83 ~gl~~t~a~~asil~~~~Pv~~~lla~-~~-~------------------------------------------~~~~a~ 118 (174)
.++++++++.++.+.++.|+++.+++. ++ + +++|++
T Consensus 89 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~ 168 (292)
T COG0697 89 LALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWAL 168 (292)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 54 3 677888
Q ss_pred HHHHHhhhcchhhhhhhcCchhHHHH-HHHH
Q 041218 119 WPILQVLKKSSNSLLKTNCVSVSLTV-CMGF 148 (174)
Q Consensus 119 y~i~~~~~~~~~~~~~~~~~~l~~t~-~~~l 148 (174)
+.+..| +.. +. ++..... ++..
T Consensus 169 ~~~~~~------~~~-~~-~~~~~~~~~~~~ 191 (292)
T COG0697 169 YTALVK------RLS-RL-GPVTLALLLQLL 191 (292)
T ss_pred HHHHHH------Hhc-CC-ChHHHHHHHHHH
Confidence 888888 766 55 3566665 5655
No 15
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.92 E-value=4.4e-08 Score=77.97 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMS--PRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNM 80 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~--p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~ 80 (174)
.+++.++|+.+.+..|...++ .+ +..+..+|+.++.+++.++.+..++. ++.+.+++..+..+|+++....+.+
T Consensus 133 ~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T TIGR00950 133 GLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN---PQALSLQWGALLYLGLIGTALAYFL 208 (260)
T ss_pred HHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999998753 66 44566678999999998887653322 2335678888899999999999999
Q ss_pred HHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 81 FYEGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 81 ~~~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
++.++++.+++.++.+.++.|+++.++++++
T Consensus 209 ~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~ 239 (260)
T TIGR00950 209 WNKGLTLVDPSAASILALAEPLVALLLGLLI 239 (260)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988743
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.84 E-value=1.2e-07 Score=75.35 Aligned_cols=135 Identities=14% Similarity=0.146 Sum_probs=108.3
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhH
Q 041218 13 VAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTM 92 (174)
Q Consensus 13 ~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~ 92 (174)
..-+.|..+.. +.|...+.+|..+++++++++. |.++ .+.+++++..+...|..- ...|.+||.+++..+=+.
T Consensus 27 Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~--RPwr---~r~~~~~~~~~~~yGvsL-g~MNl~FY~si~riPlGi 99 (292)
T COG5006 27 GASFAKSLFPL-VGAAGVTALRLAIAALILLALF--RPWR---RRLSKPQRLALLAYGVSL-GGMNLLFYLSIERIPLGI 99 (292)
T ss_pred hHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh--hHHH---hccChhhhHHHHHHHHHH-HHHHHHHHHHHHhccchh
Confidence 34456777764 9999999999999999998873 3322 346678899999999875 566778899999999999
Q ss_pred HHHhhhhHHHHHHHHHH-HHH------------------------------------HHHHhHHHHHHhhhcchhhhhhh
Q 041218 93 GTAMGNLIPAITFVLAA-IVG------------------------------------SCCWSLWPILQVLKKSSNSLLKT 135 (174)
Q Consensus 93 asil~~~~Pv~~~lla~-~~~------------------------------------~~~~a~y~i~~~~~~~~~~~~~~ 135 (174)
+.-+..+-|+.+.+++. -.+ ..||+.|++.+| |.-+.
T Consensus 100 AVAiEF~GPL~vA~~~sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~------r~g~~ 173 (292)
T COG5006 100 AVAIEFTGPLAVALLSSRRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQ------RAGRA 173 (292)
T ss_pred hhhhhhccHHHHHHHhccchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcc------hhccc
Confidence 99999999999987642 111 899999999998 87765
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHh
Q 041218 136 NCVSVSLTVCMGFFATIQSAIVTLFL 161 (174)
Q Consensus 136 ~~~~l~~t~~~~l~g~~~~~~~~~~~ 161 (174)
-+ .-.-++..++++++..+|++.-.
T Consensus 174 ~~-g~~g~a~gm~vAaviv~Pig~~~ 198 (292)
T COG5006 174 EH-GTAGVAVGMLVAALIVLPIGAAQ 198 (292)
T ss_pred CC-CchHHHHHHHHHHHHHhhhhhhh
Confidence 53 67888999999999999998743
No 17
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.69 E-value=1.7e-06 Score=70.69 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY 82 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~ 82 (174)
.+++.+.|+.+.+..|+..+ +.+|...... ..++++++.++...... . ...+...+...+.+|+++..+.+.+++
T Consensus 153 ~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~~~~l~~ 227 (293)
T PRK10532 153 ALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--E-ALWHWSILPLGLAVAILSTALPYSLEM 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999765 4888877544 45666777776654322 1 123445566667899999999999999
Q ss_pred hHhhcchhhHHHHhhhhHHHHHHHHHHH
Q 041218 83 EGLYLASSTMGTAMGNLIPAITFVLAAI 110 (174)
Q Consensus 83 ~gl~~t~a~~asil~~~~Pv~~~lla~~ 110 (174)
+++++.+|+.++++.++.|++..+++++
T Consensus 228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l 255 (293)
T PRK10532 228 IALTRLPTRTFGTLMSMEPALAAVSGMI 255 (293)
T ss_pred HHHHhcChhHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999998874
No 18
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.61 E-value=4.1e-07 Score=65.32 Aligned_cols=106 Identities=12% Similarity=0.166 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 041218 4 LGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYE 83 (174)
Q Consensus 4 ~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~ 83 (174)
++++++||...++.|+.++ |+||..-.+.|..+....+..+....++.+.....++|.|..+.+-|+.+ .+--.+||.
T Consensus 9 LLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glswl~Yf~ 86 (140)
T COG2510 9 LLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSWLLYFR 86 (140)
T ss_pred HHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHHHHHHH
Confidence 5678999999999999985 69999999999999998888887765554332235778888888888665 777788999
Q ss_pred HhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 84 GLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 84 gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
++|..+|+...-+-.+.|+++.++++++
T Consensus 87 ALk~G~as~VvPldk~svvl~~lls~lf 114 (140)
T COG2510 87 ALKKGKASRVVPLDKTSVVLAVLLSILF 114 (140)
T ss_pred HHhcCCcceEEEcccccHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 19
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.50 E-value=9.3e-06 Score=66.26 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY 82 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~ 82 (174)
.+++.++|+.+.+..|..- . -++.....+++.+++.++.++....+.... ...+.++|..+..+|+++....+.+++
T Consensus 155 ~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~~~~~l~~ 231 (292)
T PRK11272 155 ILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLT-ALPTLSGFLALGYLAVFGSIIAISAYM 231 (292)
T ss_pred HHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999853 3 345667789999999888887654332111 112457888899999999999999999
Q ss_pred hHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 83 EGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 83 ~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
.++++.++++++.+.++.|++..++++++
T Consensus 232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~ 260 (292)
T PRK11272 232 YLLRNVRPALATSYAYVNPVVAVLLGTGL 260 (292)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 20
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.36 E-value=7.5e-06 Score=57.71 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC-CCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHH
Q 041218 32 VYRQAMATLIIAPIAYFSRRKSR-IPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110 (174)
Q Consensus 32 ~~R~~ia~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~ 110 (174)
.+|...+.+++..+...+++.++ .+..++|++.+....|+++...++.+++.|+++++ +.++.+.++.|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 58999999998887766443211 11223466777778899998899999999999999 58889999999999998874
Q ss_pred H
Q 041218 111 V 111 (174)
Q Consensus 111 ~ 111 (174)
+
T Consensus 81 ~ 81 (113)
T PF13536_consen 81 F 81 (113)
T ss_pred H
Confidence 3
No 21
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.30 E-value=4.3e-05 Score=62.52 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHH---HHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIV---ITINQN 79 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g---~~~~~~ 79 (174)
.+++.++||.+.+..|... |.++.++. |..++.+++..+....+ + ++.+. ++....|+++ -...|.
T Consensus 6 ~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~-~---~~~~~---~~~~~~g~l~G~~w~ig~~ 74 (290)
T TIGR00776 6 ALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFV-L---PEFWA---LSIFLVGLLSGAFWALGQI 74 (290)
T ss_pred HHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHh-C---Ccccc---cHHHHHHHHHHHHHHhhhh
Confidence 3567899999999999854 68888886 88888887766554432 1 12221 2333444444 677789
Q ss_pred HHHhHhhcchhhHHHHhhh-hHHHHHHHHHHH
Q 041218 80 MFYEGLYLASSTMGTAMGN-LIPAITFVLAAI 110 (174)
Q Consensus 80 ~~~~gl~~t~a~~asil~~-~~Pv~~~lla~~ 110 (174)
+++.++++++.+.|-.+.+ +.|+++.+.+.+
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~ 106 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVI 106 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999977776 777777777765
No 22
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.27 E-value=1.9e-05 Score=64.52 Aligned_cols=102 Identities=12% Similarity=0.127 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY 82 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~ 82 (174)
++++.++|+.+.+..|... ++.+|..... ..+++.+.+.... ... .....+.+.|..+...|+ ...+.+.+++
T Consensus 161 ~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~l~~~~~-~t~~~~~l~~ 233 (295)
T PRK11689 161 AFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFL-SPQ-PAMVFSLPAIIKLLLAAA-AMGFGYAAWN 233 (295)
T ss_pred HHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHH-hcC-ccccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5678899999999999965 4578876532 3344444443322 221 112345567777777774 6688899999
Q ss_pred hHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 83 EGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 83 ~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
.++++.++++++.+.++.|++..++++++
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~ 262 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALL 262 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 23
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.24 E-value=8e-05 Score=62.85 Aligned_cols=107 Identities=8% Similarity=0.005 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhccCC---CCcchhHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSP-RGSVVYRQAMATLIIAPIAYFSRRKSRI---PPLGFKSFSLIFLTALIVITINQ 78 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p-~~l~~~R~~ia~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~lg~~g~~~~~ 78 (174)
++++.+.|+.+.+..|..... .|| ....++...++++.+.+.....++.... ...+.. ...++..|+. ..+.+
T Consensus 194 ~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t~lay 270 (358)
T PLN00411 194 LTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-TSVYY 270 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-HHHHH
Confidence 466789999999999987764 655 4667777787777766655554432110 011222 2234455654 46778
Q ss_pred HHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 79 NMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 79 ~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
.++++++++.+|+.++++.++.|+++.++++++.
T Consensus 271 ~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~L 304 (358)
T PLN00411 271 VIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFL 304 (358)
T ss_pred HHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998764
No 24
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.21 E-value=0.00012 Score=59.95 Aligned_cols=109 Identities=11% Similarity=0.134 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHHHHhhhccC----CCCcchhHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSP---RGSVVYRQAMATLIIAPIAYFSRRKSR----IPPLGFKSFSLIFLTALIVIT 75 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p---~~l~~~R~~ia~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~lg~~g~~ 75 (174)
.+++.++|+.+.+..|...++ .++ .....+-..++.+.+.......++... ....+.++|..++.+|+++..
T Consensus 148 ~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~ 226 (299)
T PRK11453 148 TLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATI 226 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHH
Confidence 467889999999999986543 332 333444444444433333322232110 013456788899999999999
Q ss_pred HHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 76 INQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 76 ~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
..+.+++.++++.++++++.+.++.|++..++++++.
T Consensus 227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~l 263 (299)
T PRK11453 227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLL 263 (299)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988654
No 25
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.20 E-value=1.5e-05 Score=65.15 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcch---------hHHHH-HHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQ-GMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF---------KSFSL-IFLTAL 71 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~-~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~---------~~~~~-~~~lg~ 71 (174)
.+++.+.|+.+.+..|...++ ++||..+..+-...+++.+.|+....+.... ...+. ..... .+..+.
T Consensus 150 ~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (302)
T TIGR00817 150 AMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPF-LPHGFMQAISGVNVTKIYTVSLVAAM 228 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHH-HHHHHHHhhcccCchHHHHHHHHHHH
Confidence 467889999999999997651 5999999999999999999998765442111 00000 01111 223333
Q ss_pred HHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 72 IVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 72 ~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
.....++.+++.++++++|+.+++..++.|+++.++++++.
T Consensus 229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~l 269 (302)
T TIGR00817 229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFF 269 (302)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhc
Confidence 34445556778899999999999999999999999887653
No 26
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.16 E-value=0.0003 Score=57.21 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218 4 LGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSR--IPPLGFKSFSLIFLTALIVITINQNMF 81 (174)
Q Consensus 4 ~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~lg~~g~~~~~~~~ 81 (174)
+.+.++||......|.. + ++|+.++...|...+...++......++.+. .-..++|.+....+.++. ...+-..|
T Consensus 13 l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i~~nW~lf 89 (293)
T COG2962 13 LLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-IGLNWWLF 89 (293)
T ss_pred HHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHh
Confidence 56789999999999974 4 5999999999999998887765544332211 012234555555555555 58899999
Q ss_pred HhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 82 YEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 82 ~~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
.++.+...+-.+|+=.+..|++..+++.++.
T Consensus 90 iWAvn~g~~leaSLGY~InPL~~VllG~lfl 120 (293)
T COG2962 90 IWAVNNGHVLEASLGYFINPLVNVLLGRLFL 120 (293)
T ss_pred heecCCCchhHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998763
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.83 E-value=0.0006 Score=54.37 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH---hhhccCCCCc-chhHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYF---SRRKSRIPPL-GFKSFSLIFLTALIVITINQ 78 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~---~~~~~~~~~~-~~~~~~~~~~lg~~g~~~~~ 78 (174)
.+++.++|+.+.+..|..-++ ++.... .+...+.|+... .......... ..++|..++.+|++ ....+
T Consensus 151 ~l~aa~~~a~~~i~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~ 222 (256)
T TIGR00688 151 ALVLAFSFTAYGLIRKALKNT--DLAGFC-----LETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPL 222 (256)
T ss_pred HHHHHHHHHHHHHHHhhcCCC--CcchHH-----HHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHH
Confidence 356789999999999986432 322222 222222222211 1111110111 23588888888987 57899
Q ss_pred HHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 79 NMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 79 ~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
.+++.|+++.+|+.++.+.++.|++..+++.+.
T Consensus 223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988753
No 28
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.75 E-value=0.0014 Score=54.37 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=103.6
Q ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-chhHHHHHHHHHHHHHHHHHHHHHhHhhcchhh
Q 041218 15 VFTGAALL--QGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPL-GFKSFSLIFLTALIVITINQNMFYEGLYLASST 91 (174)
Q Consensus 15 v~~K~~l~--~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~ 91 (174)
+..|..++ +.--|..+...++..+.+.++..-..+..+ . ++. ++..+..++-+|++- ++...+-+.+++|.+.+
T Consensus 34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~-~-~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~Vs 110 (316)
T KOG1441|consen 34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVP-P-SKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVS 110 (316)
T ss_pred EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCC-C-CccccccchHHHHHHHHHH-HHHHHhcchhhhccchh
Confidence 34688877 434488999998888877666553332222 1 222 334566677777765 66677778999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHH----------------------------------------HHHHhHHHHHHhhhcchhh
Q 041218 92 MGTAMGNLIPAITFVLAAIVG----------------------------------------SCCWSLWPILQVLKKSSNS 131 (174)
Q Consensus 92 ~asil~~~~Pv~~~lla~~~~----------------------------------------~~~~a~y~i~~~~~~~~~~ 131 (174)
..-.+=.++|.++.++++++. .++.+...+++| +
T Consensus 111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~------~ 184 (316)
T KOG1441|consen 111 FYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSK------K 184 (316)
T ss_pred HHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 999999999999999999864 556667778877 6
Q ss_pred hhh--hcC-chhHHHHHHHHHHHHHHH-HHHHHhCCCC
Q 041218 132 LLK--TNC-VSVSLTVCMGFFATIQSA-IVTLFLEPDP 165 (174)
Q Consensus 132 ~~~--~~~-~~l~~t~~~~l~g~~~~~-~~~~~~~~~~ 165 (174)
+.+ +++ |++.+..++.-++.+.++ |+....|++.
T Consensus 185 ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~ 222 (316)
T KOG1441|consen 185 LLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNK 222 (316)
T ss_pred hhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccc
Confidence 663 332 689999999999999998 9888877643
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.74 E-value=0.00015 Score=58.80 Aligned_cols=106 Identities=11% Similarity=-0.079 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPR----GSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQ 78 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~----~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~ 78 (174)
.+++.++|+.+.+..|...+ +.+|. ....+.+.+.++.+.+....++++ . ...+.+++......+.++..+.+
T Consensus 149 ~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~s~l~~ 225 (281)
T TIGR03340 149 ALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-S-MFPYARQILPSATLGGLMIGGAY 225 (281)
T ss_pred HHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-c-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999997543 35543 233333333322222222111211 1 11122344566677778888899
Q ss_pred HHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 79 NMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 79 ~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
.+++.++++.+++.++.+.++.|++..++++++
T Consensus 226 ~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~ 258 (281)
T TIGR03340 226 ALVLWAMTRLPVATVVALRNTSIVFAVVLGIWF 258 (281)
T ss_pred HHHHHHHhhCCceEEEeecccHHHHHHHHHHHH
Confidence 999999999999999999999999999988753
No 30
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.56 E-value=0.0033 Score=52.78 Aligned_cols=109 Identities=11% Similarity=0.130 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCC-------Ccc---hhHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQ------GMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIP-------PLG---FKSFSLI 66 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~------~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~-------~~~---~~~~~~~ 66 (174)
.+++.+.|+...+..|..+++ .+++..+..+-..+++++++|+....|...... ..+ .......
T Consensus 199 ~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (350)
T PTZ00343 199 AMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK 278 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH
Confidence 467889999999999998753 266777777778899999999876444211000 000 1111122
Q ss_pred HHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 67 FLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 67 ~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
.+.+.+...+++.+.+.++++++|.++++..++-|+++.++++++
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~ 323 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIII 323 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHH
Confidence 233333445555555679999999999999999999999988854
No 31
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.52 E-value=0.02 Score=47.02 Aligned_cols=138 Identities=10% Similarity=0.018 Sum_probs=99.5
Q ss_pred HHHHHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 041218 12 GVAVFTGAALL-QGMS--PRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLA 88 (174)
Q Consensus 12 ~~~v~~K~~l~-~~~~--p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t 88 (174)
.+.+..+.... ++.. |..+.+..+....+.-.+.....+++ +.+++.+...+..+++- .+.+.+.+.+++|.
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i 88 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP----KSRKIPLKKYAILSFLF-FLASVLSNAALKYI 88 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc----CCCcChHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence 34455555443 2344 88999999988877666654332211 12233345566666654 66678888999999
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHH--------------------------------------------------HHHHhH
Q 041218 89 SSTMGTAMGNLIPAITFVLAAIVG--------------------------------------------------SCCWSL 118 (174)
Q Consensus 89 ~a~~asil~~~~Pv~~~lla~~~~--------------------------------------------------~~~~a~ 118 (174)
+-..-.++-+..|+.+++++.++. .++-|.
T Consensus 89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~ 168 (303)
T PF08449_consen 89 SYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAF 168 (303)
T ss_pred ChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHH
Confidence 999999999999999999997653 556667
Q ss_pred HHHHHhhhcchhhhhhhcC-chhHHHHHHHHHHHHHHHHHHHH
Q 041218 119 WPILQVLKKSSNSLLKTNC-VSVSLTVCMGFFATIQSAIVTLF 160 (174)
Q Consensus 119 y~i~~~~~~~~~~~~~~~~-~~l~~t~~~~l~g~~~~~~~~~~ 160 (174)
..+.|+ |..++|+ ++.....|+.+++.+...+....
T Consensus 169 ~~~~qe------~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 169 TGVYQE------KLFKKYGKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred HHHHHH------HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888 8888886 57789999999999988777766
No 32
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.49 E-value=0.0093 Score=48.72 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCcchhHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQG-MSPRGSVVYRQAMATLIIAPIAYFSRRKSRI-PPLGFKSFSLIFLTALIVITINQNM 80 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~-~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~g~~~~~~~ 80 (174)
.+++.++|+.+.+..|...++. .++.....+-..++...+.+.. ...... ...+...+..+...|+ .....+.+
T Consensus 154 ~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~ 229 (296)
T PRK15430 154 ALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHH-HHHHHHHH
Confidence 4567899999999999864321 2223333333344433322221 111000 0111222333444555 45688999
Q ss_pred HHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 81 FYEGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 81 ~~~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
++.++++.+|+.++.+.++.|++..++++++
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~ 260 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTF 260 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988754
No 33
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.46 E-value=0.0071 Score=44.09 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC---c-------chhHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQ------GMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPP---L-------GFKSFSLI 66 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~------~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~---~-------~~~~~~~~ 66 (174)
.+.+.+.-+...+..|..+++ +.+|..+..+-...++++++|.....|+.+..+. . +.+.+..+
T Consensus 5 ~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (153)
T PF03151_consen 5 ALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLL 84 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHH
Confidence 456788999999999998865 7999999999999999999998877665431000 0 12334444
Q ss_pred HHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 67 FLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 67 ~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
...|+++ ..++...+.-+++++|...++..+.-.+.+.++++++
T Consensus 85 ~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~ 128 (153)
T PF03151_consen 85 ILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIF 128 (153)
T ss_pred HHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhh
Confidence 5556665 7888899999999999999999999999988887754
No 34
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.33 E-value=0.011 Score=47.00 Aligned_cols=102 Identities=14% Similarity=0.225 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVV-YRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF 81 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~-~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~ 81 (174)
.+++.+.|+.+.+..|... + .++..... +.+..+.....+. ..+... .+.+.+++......|+++....+.++
T Consensus 159 ~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (292)
T COG0697 159 ALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLF--FLSGFG--APILSRAWLLLLYLGVFSTGLAYLLW 232 (292)
T ss_pred HHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHH--Hhcccc--ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999866 3 77777776 4444222222222 212111 13456788889999999988899999
Q ss_pred HhHhhcchhhHHHHhhhhHHHHHHHHHHH
Q 041218 82 YEGLYLASSTMGTAMGNLIPAITFVLAAI 110 (174)
Q Consensus 82 ~~gl~~t~a~~asil~~~~Pv~~~lla~~ 110 (174)
+.++++.+++.++.+..+.|++..+++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~l 261 (292)
T COG0697 233 YYALRLLGASLVALLSLLEPVFAALLGVL 261 (292)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876553
No 35
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.22 E-value=0.00023 Score=57.53 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHH-HHHHHHHHHHHHHHHHhHh
Q 041218 7 QCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLI-FLTALIVITINQNMFYEGL 85 (174)
Q Consensus 7 ~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~lg~~g~~~~~~~~~~gl 85 (174)
...+....++.+..+ + .+|.+...-|+..-.++-.|-..+++..-..|+ ..|.|..+ -.+|..| ....|+++
T Consensus 46 s~ff~~~~vv~t~~~-e-~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~-g~R~~LiLRg~mG~tg----vmlmyya~ 118 (346)
T KOG4510|consen 46 SYFFNSCMVVSTKVL-E-NDPMELASFRLLVRMLITYPCLIYYMQPVIGPE-GKRKWLILRGFMGFTG----VMLMYYAL 118 (346)
T ss_pred HHHHhhHHHhhhhhh-c-cChhHhhhhhhhhehhhhheEEEEEeeeeecCC-CcEEEEEeehhhhhhH----HHHHHHHH
Confidence 356666677777665 3 899999999977766665554333222111122 22222111 2455555 33456899
Q ss_pred hcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 86 YLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 86 ~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
+|-+-+.|+++....|++|.++|+.++
T Consensus 119 ~~mslaDA~vItFssPvft~ifaw~~L 145 (346)
T KOG4510|consen 119 MYMSLADAVVITFSSPVFTIIFAWAFL 145 (346)
T ss_pred hhcchhheEEEEecChHHHHHHHHHHH
Confidence 999999999999999999999999875
No 36
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=96.64 E-value=0.041 Score=44.99 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 041218 4 LGLQCSYAGVAVFTGAALLQGMSPRGS---VVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNM 80 (174)
Q Consensus 4 ~~~~~~wg~~~v~~K~~l~~~~~p~~l---~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~ 80 (174)
+++.+.++.+.+..|.. +.||.+. ..+-..+++.++.+.. + + .+ +. +.+......+.|++ ....+.+
T Consensus 158 l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~-~~-~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 158 LMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AK-PL-KKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred HHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-c-cc-ch-HHHHHHHHHHHHHH-HHHHHHH
Confidence 56788999999999964 3889988 4444455555544432 1 1 12 22 23344445558888 5888889
Q ss_pred HHhHhh-cchhhHHHHhhhhHHHHHHHHHHH
Q 041218 81 FYEGLY-LASSTMGTAMGNLIPAITFVLAAI 110 (174)
Q Consensus 81 ~~~gl~-~t~a~~asil~~~~Pv~~~lla~~ 110 (174)
|+.|.+ +..++.++++.+..|+...+.+++
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~ 258 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGIL 258 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999987764
No 37
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.49 E-value=0.042 Score=44.26 Aligned_cols=105 Identities=17% Similarity=0.094 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 041218 4 LGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYE 83 (174)
Q Consensus 4 ~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~ 83 (174)
..+..+|+.+.+.+|.+-+ ..+--.=+..-+.+|+++.+|+..-+... .-.+++-+..-+..|+++..+.+.+...
T Consensus 154 l~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~---~l~~p~ll~laLgvavlSSalPYsLEmi 229 (292)
T COG5006 154 LGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGP---ALFSPSLLPLALGVAVLSSALPYSLEMI 229 (292)
T ss_pred HHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcch---hhcChHHHHHHHHHHHHhcccchHHHHH
Confidence 4577999999999999764 36666778889999999999997643321 1234555555567899999999999999
Q ss_pred HhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 84 GLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 84 gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
+++..++..-++++++.|.+..+.++++.
T Consensus 230 AL~rlp~~~F~~LlSLePa~aAl~G~i~L 258 (292)
T COG5006 230 ALRRLPARTFGTLLSLEPALAALSGLIFL 258 (292)
T ss_pred HHhhCChhHHHHHHHhhHHHHHHHHHHHh
Confidence 99999999999999999999998877653
No 38
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.00 E-value=0.09 Score=44.55 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=61.5
Q ss_pred HHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH------------------------------------------
Q 041218 75 TINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG------------------------------------------ 112 (174)
Q Consensus 75 ~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~------------------------------------------ 112 (174)
.+.++.++.++.||+++..+++.++.-+||..+|.++.
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~ 249 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGN 249 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHH
Confidence 56678888999999999999999999999999988774
Q ss_pred ------HHHHhHHHHHHhhhcchhhhhhhcC---chhHHHHHHHHHHHHHHHHHHHH
Q 041218 113 ------SCCWSLWPILQVLKKSSNSLLKTNC---VSVSLTVCMGFFATIQSAIVTLF 160 (174)
Q Consensus 113 ------~~~~a~y~i~~~~~~~~~~~~~~~~---~~l~~t~~~~l~g~~~~~~~~~~ 160 (174)
++.||.|+++.| |...+.+ |--.+-.+.-++.-+.+.|..++
T Consensus 250 llaL~sA~~YavY~vllk------~~~~~eg~rvdi~lffGfvGLfnllllwP~l~i 300 (416)
T KOG2765|consen 250 LLALLSALLYAVYTVLLK------RKIGDEGERVDIQLFFGFVGLFNLLLLWPPLII 300 (416)
T ss_pred HHHHHHHHHHHHHHHHHH------hhcccccccccHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999998 6665552 32234455556666666665544
No 39
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=95.98 E-value=0.61 Score=38.40 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHHHhhhccCC--------------CCcchhHHHHHHHH
Q 041218 11 AGVAVFTGAALL---QGMS----PRGSVVYRQAMATLIIAPIAYFSRRKSRI--------------PPLGFKSFSLIFLT 69 (174)
Q Consensus 11 g~~~v~~K~~l~---~~~~----p~~l~~~R~~ia~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l 69 (174)
+.|.+.+|++-+ +|-| |+..+..-|+--++++..+.+++.|.+.+ ++.+++....=.++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~ 95 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC 95 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence 456778888653 3333 55555555555567777766665443221 12222222222344
Q ss_pred HHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH-------------------------------------
Q 041218 70 ALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG------------------------------------- 112 (174)
Q Consensus 70 g~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~------------------------------------- 112 (174)
-..| ..+.|.|+.+|+|+.--.+-...-+|+.+++..++
T Consensus 96 Di~g----sslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~ 171 (372)
T KOG3912|consen 96 DIAG----SSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDY 171 (372)
T ss_pred HHhh----hHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcccc
Confidence 4555 55567999999999877777788888888887543
Q ss_pred -------------HHHHhHHHHHHhhhcchhhhhhhcC-chhHHHHHHHHHHHHHHHHHH
Q 041218 113 -------------SCCWSLWPILQVLKKSSNSLLKTNC-VSVSLTVCMGFFATIQSAIVT 158 (174)
Q Consensus 113 -------------~~~~a~y~i~~~~~~~~~~~~~~~~-~~l~~t~~~~l~g~~~~~~~~ 158 (174)
.+.-|.-.+.-. |..++++ +|+...+|+-++|-+.+...+
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Ee------k~l~~~nV~pl~avg~eGlfG~v~~slL~ 225 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEE------KQLKKSNVAPLQAVGWEGLFGLVILSLLA 225 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHH------hhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence 334444455544 6677765 699999999999955443333
No 40
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=94.96 E-value=0.26 Score=41.37 Aligned_cols=106 Identities=8% Similarity=-0.044 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc--hhHHHHHHHHHHHHHHHHHH
Q 041218 2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLG--FKSFSLIFLTALIVITINQN 79 (174)
Q Consensus 2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~lg~~g~~~~~~ 79 (174)
.++++++++|.+.+.-|....+ .|+.++...=-+++.++..+.....|++.. .+.+ .+... .++...++....+.
T Consensus 172 l~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i-~~~~w~~~~~~-~~v~~~~~lf~~y~ 248 (334)
T PF06027_consen 172 LALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGI-ESIHWTSQVIG-LLVGYALCLFLFYS 248 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhh-hccCCChhhHH-HHHHHHHHHHHHHH
Confidence 3577899999999999998764 888888877777888877776666676544 3332 23222 22223344455666
Q ss_pred HHHhHhhcchhhHHHHhhhhHHHHHHHHHHH
Q 041218 80 MFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110 (174)
Q Consensus 80 ~~~~gl~~t~a~~asil~~~~Pv~~~lla~~ 110 (174)
+.-..+++++|+...+=.-+...+..++..+
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~ 279 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIF 279 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHH
Confidence 6678889999886665455566666665553
No 41
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=94.64 E-value=1.4 Score=35.30 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 59 GFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 59 ~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
++||..+..+=+++ .++++.+.+.++++.+|+.--++..+-.++|++++++++
T Consensus 13 ~~~~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L 65 (244)
T PF04142_consen 13 SPKDTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLL 65 (244)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35676666666666 799999999999999999999999999999999998754
No 42
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=94.40 E-value=0.44 Score=39.49 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=43.2
Q ss_pred CcchhHHHHH-HHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 57 PLGFKSFSLI-FLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 57 ~~~~~~~~~~-~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
+.++++..+- .-.|+. .++.-++-+++++|++-+.=+..=+..++|+.+++.+++
T Consensus 77 ~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~ 132 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFK 132 (349)
T ss_pred CCcHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHH
Confidence 3456655433 345555 488999999999999999888888999999999998876
No 43
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=94.24 E-value=1.1 Score=31.46 Aligned_cols=44 Identities=14% Similarity=-0.017 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 68 LTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 68 ~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
..++++..+.+.++..++++.+.+.|-.+.++.|+++.++++++
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~ 84 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKL 84 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44558888899999999999999999998889999999988753
No 44
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=94.05 E-value=0.085 Score=36.37 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=36.3
Q ss_pred HHHhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 041218 114 CCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPD 164 (174)
Q Consensus 114 ~~~a~y~i~~~~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~~~~~~~~ 164 (174)
++||.+.+..| +..++.| +...+.+.+..+++ .++...+.+++
T Consensus 1 ~~~a~~~~~~k------~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 43 (126)
T PF00892_consen 1 FSWAIYSVFSK------KLLKKIS-PLSITFWRFLIAGI-LLILLLILGRK 43 (126)
T ss_pred ceeeeHHHHHH------HHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccc
Confidence 57999999999 8999984 99999999999998 77777666543
No 45
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=5.1 Score=33.32 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=64.0
Q ss_pred HHHHHHHHH----HHHHHHHHhC-CCChHHHH--HHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHH
Q 041218 5 GLQCSYAGV----AVFTGAALLQ-GMSPRGSV--VYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITIN 77 (174)
Q Consensus 5 ~~~~~wg~~----~v~~K~~l~~-~~~p~~l~--~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~ 77 (174)
++.+.++.+ .++-|.++.. ++| ..+. .++.+...+++...-. -|-.+.++.++++.+..+-..++- ...
T Consensus 15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~-~~l~l~~~Q~l~s~~~v~~lk~--~~lv~~~~l~~~~~kk~~P~~~lf-~~~ 90 (314)
T KOG1444|consen 15 LSALFYCLSSILMTVVNKIVLSSYNFP-MGLLLMLLQSLASVLVVLVLKR--LGLVNFRPLDLRTAKKWFPVSLLF-VGM 90 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHH--hceeecCCcChHHHHHHccHHHHH-HHH
Confidence 344455544 4556877764 343 3333 3777776655544321 121112455565555555555543 444
Q ss_pred HHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 78 QNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 78 ~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
...-..++||.+...-+++=+..|+++++....++
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~ 125 (314)
T KOG1444|consen 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFF 125 (314)
T ss_pred HHHccccccccCchHHHHHhhchHHHHHHhHHhhc
Confidence 44556899999999999999999999999887654
No 46
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=89.91 E-value=1.7 Score=35.41 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=85.3
Q ss_pred CCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHH
Q 041218 23 QGMS-PRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIP 101 (174)
Q Consensus 23 ~~~~-p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~P 101 (174)
.|++ |..=.++-...=+++--|+..+|. + . -+ ..|-+.+++|+.-+-. +++...+-|||+-+...++-.-.-
T Consensus 43 k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~-~-~~---~~~~hYilla~~DVEa-Ny~vV~AyQyTsmtSi~lLDcwai 115 (336)
T KOG2766|consen 43 KGINAPTSQTFLNYVLLALVYGPIMLFRR-K-Y-IK---AKWRHYILLAFVDVEA-NYFVVKAYQYTSMTSIMLLDCWAI 115 (336)
T ss_pred ccCCCccHHHHHHHHHHHHHHhhHHHhhh-H-H-HH---HHHHHhhheeEEeecc-cEEEeeehhhcchHHHHHHHHhhh
Confidence 3344 444455555555555566555433 1 1 12 2344577888876444 344568899999988888877555
Q ss_pred HHHHHHHHHHH------------------------------------------------HHHHhHHHHHHhhhcchhhhh
Q 041218 102 AITFVLAAIVG------------------------------------------------SCCWSLWPILQVLKKSSNSLL 133 (174)
Q Consensus 102 v~~~lla~~~~------------------------------------------------~~~~a~y~i~~~~~~~~~~~~ 133 (174)
..+.+++++++ +-+||.-++... -+.
T Consensus 116 p~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EE------flv 189 (336)
T KOG2766|consen 116 PCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEE------FLV 189 (336)
T ss_pred HHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHH------HHH
Confidence 56666787764 778888888888 778
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 041218 134 KTNCVSVSLTVCMGFFATIQSAIVTLFLEPD 164 (174)
Q Consensus 134 ~~~~~~l~~t~~~~l~g~~~~~~~~~~~~~~ 164 (174)
|+-+ ...+...--++|++.+.+= ++.|++
T Consensus 190 kn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~ 218 (336)
T KOG2766|consen 190 KNAD-RVELMGFLGLFGAIISAIQ-FIFERH 218 (336)
T ss_pred hcCc-HHHHHHHHHHHHHHHHHHH-Hhhhcc
Confidence 8874 7889999999999998654 666654
No 47
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=89.59 E-value=10 Score=30.95 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHH--hhhccCCCC---cchhHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALL-QGMSPRGSVVYRQAMATLIIAPIAYF--SRRKSRIPP---LGFKSFSLIFLTALIVITI 76 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~-~~~~p~~l~~~R~~ia~~~l~~~~~~--~~~~~~~~~---~~~~~~~~~~~lg~~g~~~ 76 (174)
++++.++-|...+..+..++ ++.+|.+..++-..++.+..++.... .+......+ ..+..+..++...+.+. .
T Consensus 159 l~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~-~ 237 (303)
T PF08449_consen 159 LLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGA-L 237 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHH-H
Confidence 55666788888888888774 57999999999999998888776655 111100001 11234455566666664 4
Q ss_pred HHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 77 NQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 77 ~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
.|.+.+.-.+..+|...+++..+--+++.+++.++
T Consensus 238 g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~ 272 (303)
T PF08449_consen 238 GQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVII 272 (303)
T ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHh
Confidence 44455566899999999999999999999888753
No 48
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=88.93 E-value=0.5 Score=38.64 Aligned_cols=102 Identities=14% Similarity=-0.055 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHh
Q 041218 6 LQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGL 85 (174)
Q Consensus 6 ~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl 85 (174)
.++.-+..+++.|+.-+ ..+-..-+.+=..++.+.-+..+.....-+ -+..+|||+.+..+|++| .+.|.+...|+
T Consensus 199 s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~--lP~cgkdr~l~~~lGvfg-figQIllTm~l 274 (346)
T KOG4510|consen 199 SVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQ--LPHCGKDRWLFVNLGVFG-FIGQILLTMGL 274 (346)
T ss_pred hHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhcccee--cCccccceEEEEEehhhh-hHHHHHHHHHh
Confidence 33444555666665422 244443333333444333222221112222 245678888888999998 89999999999
Q ss_pred hcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 86 YLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 86 ~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
|.--|+-.+++.++--++.++--.++
T Consensus 275 QiErAGpvaim~~~dvvfAf~wqv~f 300 (346)
T KOG4510|consen 275 QIERAGPVAIMTYTDVVFAFFWQVLF 300 (346)
T ss_pred hhhccCCeehhhHHHHHHHHHHHHHH
Confidence 99999999999999998888765544
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=86.76 E-value=4.1 Score=29.38 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHH
Q 041218 66 IFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAA 109 (174)
Q Consensus 66 ~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~ 109 (174)
...+|+.+..+.+.++..++++.+++.|.-+.+..|+++.+.++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~ 93 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAM 93 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999777777777766554
No 50
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=85.25 E-value=20 Score=29.60 Aligned_cols=104 Identities=11% Similarity=0.130 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 041218 5 GLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSR-IPPLGFKSFSLIFLTALIVITINQNMFYE 83 (174)
Q Consensus 5 ~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~g~~~~~~~~~~ 83 (174)
...+.||.++..=|.. ++|+.+=.+.-...-...-+.+.+..+.... ...-+.+++..+...|... +..-.++..
T Consensus 155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~~ 230 (293)
T COG2962 155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHHH
Confidence 3456778877776653 4777766665555544433333333222110 0112346677777888885 889999999
Q ss_pred HhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 84 GLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 84 gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
|-+..+=+.-+++++..|.+.+++|.++.
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~ 259 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIF 259 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998654
No 51
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=83.13 E-value=9.7 Score=29.96 Aligned_cols=38 Identities=26% Similarity=0.203 Sum_probs=33.6
Q ss_pred HHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 75 TINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 75 ~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
+..++.|..+++..+|+.++-+....-.|+.+++++..
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL 101 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVL 101 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHh
Confidence 34577888999999999999999999999999998764
No 52
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=82.12 E-value=4.7 Score=28.94 Aligned_cols=47 Identities=21% Similarity=0.104 Sum_probs=38.9
Q ss_pred HHHHhHHHHHHhhhcchhhhhhhc------CchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 041218 113 SCCWSLWPILQVLKKSSNSLLKTN------CVSVSLTVCMGFFATIQSAIVTLFLEPDP 165 (174)
Q Consensus 113 ~~~~a~y~i~~~~~~~~~~~~~~~------~~~l~~t~~~~l~g~~~~~~~~~~~~~~~ 165 (174)
.++.+++.++.| +..++. .++..+..+....+.+.+.|...+.|++.
T Consensus 9 ~~~~al~~v~~~------~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~ 61 (153)
T PF03151_consen 9 SLFSALRNVLIK------KLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQ 61 (153)
T ss_pred HHHHHHHHHHHH------HHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 678899999988 666552 27899999999999999999999887653
No 53
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=80.29 E-value=35 Score=28.87 Aligned_cols=110 Identities=14% Similarity=0.179 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhhc---cCCCCc------chhHHHHHHHH
Q 041218 2 AMLGLQCSYAGVAVFTGAALLQG---MSPRGSVVYRQAMATLIIAPIAYFSRRK---SRIPPL------GFKSFSLIFLT 69 (174)
Q Consensus 2 ~l~~~~~~wg~~~v~~K~~l~~~---~~p~~l~~~R~~ia~~~l~~~~~~~~~~---~~~~~~------~~~~~~~~~~l 69 (174)
.|++.++-+++..+..|++-..+ +.|-+.++.--.+-.++.....+..+|+ +..+.. +++|..++.+=
T Consensus 19 ~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vP 98 (345)
T KOG2234|consen 19 SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVP 98 (345)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHH
Confidence 46777888999999999987655 7788888888877766666555554322 111111 23344454444
Q ss_pred HHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 70 ALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 70 g~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
+++ +++++.++|.++.+.+|+.-.+..++--..|++++.+++
T Consensus 99 a~i-YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L 140 (345)
T KOG2234|consen 99 ALI-YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLIL 140 (345)
T ss_pred HHH-HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHH
Confidence 444 688888999999999999999988887777888777653
No 54
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=72.39 E-value=46 Score=27.79 Aligned_cols=89 Identities=9% Similarity=0.149 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHH-HHHHHhhhccC---CC-CcchhHHHHHHHHHHHHHHH
Q 041218 5 GLQCSYAGVAVFTGAALL---QGMSPRGSVVYRQAMATLIIA-PIAYFSRRKSR---IP-PLGFKSFSLIFLTALIVITI 76 (174)
Q Consensus 5 ~~~~~wg~~~v~~K~~l~---~~~~p~~l~~~R~~ia~~~l~-~~~~~~~~~~~---~~-~~~~~~~~~~~~lg~~g~~~ 76 (174)
.+.+..+...+.+|..+. +.++++.+..+---++...++ |+....+.... .. +.+.. .....+.+++ ..+
T Consensus 170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~-~f~ 247 (316)
T KOG1441|consen 170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLNSVL-AFL 247 (316)
T ss_pred HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHHHHH-HHH
Confidence 456677888899999883 469999999999999999999 98766554322 01 12222 2233334444 466
Q ss_pred HHHHHHhHhhcchhhHHHH
Q 041218 77 NQNMFYEGLYLASSTMGTA 95 (174)
Q Consensus 77 ~~~~~~~gl~~t~a~~asi 95 (174)
+|...|.-+..+||-.=++
T Consensus 248 ~Nls~f~~ig~tSalT~~V 266 (316)
T KOG1441|consen 248 LNLSAFLVIGRTSALTYSV 266 (316)
T ss_pred HHHHHHHHHcccCchhhhh
Confidence 6677778888888765444
No 55
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=69.58 E-value=40 Score=24.41 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhh
Q 041218 26 SPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNL 99 (174)
Q Consensus 26 ~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~ 99 (174)
||+.-++.-+..+.+++..+....++++. ++.+.-+| +...=|++| ..+..+.....+..+++++..+.-.
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~-~~~~~~p~-w~~lGG~lG-~~~V~~~~~~vp~lG~~~~~~l~~~ 99 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSL-ASLSSVPW-WAYLGGLLG-VFFVLSNIILVPRLGAALTTILIVA 99 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccccc-chhccCCh-HHhccHHHH-HHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 49999999999999988877666554322 22222222 333356676 6777777888888888888765443
No 56
>PRK11056 hypothetical protein; Provisional
Probab=58.49 E-value=65 Score=22.98 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 58 LGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 58 ~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
.++|.+..-++.|+++.+.+..++. +-+=.+.-|+.+.+++.-.
T Consensus 7 ~ek~tLlLaliaGl~~ng~fs~Lf~----------s~VpFSiFPlIaLvLavyc 50 (120)
T PRK11056 7 QEKGTLLLALIAGLSINGTFAALFS----------SIVPFSIFPLIALVLAVYC 50 (120)
T ss_pred cchhhHHHHHHHHHhhchhhHHHHc----------cccccHHHHHHHHHHHHHH
Confidence 4456665556777776444433211 1111345566666666543
No 57
>COG5202 Predicted membrane protein [Function unknown]
Probab=57.39 E-value=1.3e+02 Score=26.00 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=25.5
Q ss_pred HHHHhHHH---------HHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHH
Q 041218 113 SCCWSLWP---------ILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIV 157 (174)
Q Consensus 113 ~~~~a~y~---------i~~~~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~ 157 (174)
+++|+.|- =.|| .+..|+.|+-+-..+|.+.+.+++..|.
T Consensus 137 sfaws~YdG~~~ssdlt~~qk-----~ra~r~~p~vl~fL~YifF~p~Ll~GPa 185 (512)
T COG5202 137 SFAWSYYDGKEYSSDLTEHQK-----SRARRGTPTVLDFLSYIFFIPGLLLGPA 185 (512)
T ss_pred HhHHHhhcCCCccchhhhhhh-----hhhhcCCCcHHHHHHHHHHhhhhhcCCC
Confidence 77888772 2233 1344556645568888888888877653
No 58
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=55.00 E-value=72 Score=22.49 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218 3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY 82 (174)
Q Consensus 3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~ 82 (174)
|+++.++||.+.++.|.+-. +.++..-.. |..-.... . -.++|-+ .++.-.-.-...|+
T Consensus 1 ~l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~------------L--l~n~~y~-----ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 1 LLLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF------------L--LLNPKYI-----IPFLLNQSGSVLFF 59 (113)
T ss_pred CeeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH------------H--HHhHHHH-----HHHHHHHHHHHHHH
Confidence 35678999999999999875 355443331 31111111 0 0112211 12222233345566
Q ss_pred hHhhcchhhHHHHhh-hhHHHHHHHHHHH
Q 041218 83 EGLYLASSTMGTAMG-NLIPAITFVLAAI 110 (174)
Q Consensus 83 ~gl~~t~a~~asil~-~~~Pv~~~lla~~ 110 (174)
..+..++-+.+.-+. ++.=++|.+.+++
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~ 88 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWL 88 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHH
Confidence 889999988887775 5666666665543
No 59
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=54.36 E-value=42 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=22.8
Q ss_pred hHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 83 EGLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 83 ~gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
.|+.--+.-.++.+.|+.|.++++++.++
T Consensus 67 iGi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 67 LGIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred EccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788999999999999877654
No 60
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=49.49 E-value=93 Score=22.10 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=21.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHH
Q 041218 58 LGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110 (174)
Q Consensus 58 ~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~ 110 (174)
.++|.+..-++.|+++.+.+..++ ++-+=.+.-|+.+.++|.-
T Consensus 7 ~ek~tLlLaliaGl~~n~~~s~L~----------~s~VpFSiFPlIaLvLavy 49 (117)
T PF07226_consen 7 SEKKTLLLALIAGLCGNATFSALF----------SSEVPFSIFPLIALVLAVY 49 (117)
T ss_pred CchhhHHHHHHHHHhccchhHHHH----------hcccccHHHHHHHHHHHHH
Confidence 345655555677777744333221 1111124556666666654
No 61
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=48.91 E-value=1.4e+02 Score=24.08 Aligned_cols=124 Identities=7% Similarity=0.002 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHH
Q 041218 28 RGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVL 107 (174)
Q Consensus 28 ~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~ll 107 (174)
+.+.+.+.+...+.+..+-+.+.-+- +..+.|.|..+-+ +-+. .-+.--.++||.....=+++-++.-+.++..
T Consensus 38 flll~vQSlvcvv~l~iLk~l~~~~f--R~t~aK~WfpiSf---LLv~-MIyt~SKsLqyL~vpiYTiFKNltII~iAyg 111 (309)
T COG5070 38 FLLLAVQSLVCVVGLLILKFLRLVEF--RLTKAKKWFPISF---LLVV-MIYTSSKSLQYLAVPIYTIFKNLTIILIAYG 111 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhe--ehhhhhhhcCHHH---HHHH-HHHhcccceeeeeeeHHHHhccceeehhHhh
Confidence 56666666665554444322211111 1223455544433 2211 1222237888888888888877777777665
Q ss_pred HHHH-H----------------------------------------------HHHHhHHHHHHhhhcchhhhhhhcC-ch
Q 041218 108 AAIV-G----------------------------------------------SCCWSLWPILQVLKKSSNSLLKTNC-VS 139 (174)
Q Consensus 108 a~~~-~----------------------------------------------~~~~a~y~i~~~~~~~~~~~~~~~~-~~ 139 (174)
...+ + +++-+.|....| |..|-.+ ..
T Consensus 112 Evl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mr------kri~ltNf~d 185 (309)
T COG5070 112 EVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMR------KRIKLTNFKD 185 (309)
T ss_pred HHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHH------Hhhcccccch
Confidence 5432 2 677777777666 4443322 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCC
Q 041218 140 VSLTVCMGFFATIQSAIVTLFLEP 163 (174)
Q Consensus 140 l~~t~~~~l~g~~~~~~~~~~~~~ 163 (174)
..-..|.-+.+--.++.+++++|+
T Consensus 186 ~dtmfYnNllslPiL~~~s~~~ed 209 (309)
T COG5070 186 FDTMFYNNLLSLPILLSFSFLFED 209 (309)
T ss_pred hhHHHHhhhHHHHHHHHHHHHhcc
Confidence 667778877777667777777774
No 62
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=48.77 E-value=1.4e+02 Score=24.34 Aligned_cols=99 Identities=22% Similarity=0.117 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218 2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF 81 (174)
Q Consensus 2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~ 81 (174)
.+++.++.+..+.++.|.. ++||..... -..++-++-..+.....++. ..+++.| +-.+-|++= ..-+.++
T Consensus 142 ~Ll~stigy~~Y~~~~~~~---~~~~~~~~l-PqaiGm~i~a~i~~~~~~~~---~~~k~~~-~nil~G~~w-~ignl~~ 212 (269)
T PF06800_consen 142 ALLISTIGYWIYSVIPKAF---HVSGWSAFL-PQAIGMLIGAFIFNLFSKKP---FFEKKSW-KNILTGLIW-GIGNLFY 212 (269)
T ss_pred HHHHHHHHHHHHHHHHHhc---CCChhHhHH-HHHHHHHHHHHHHhhccccc---ccccchH-HhhHHHHHH-HHHHHHH
Confidence 3677888898999988873 367765544 34444333222211111211 1222222 334445543 4446667
Q ss_pred HhHhhcchhhHHHHhhhhHHHHHHHHHH
Q 041218 82 YEGLYLASSTMGTAMGNLIPAITFVLAA 109 (174)
Q Consensus 82 ~~gl~~t~a~~asil~~~~Pv~~~lla~ 109 (174)
+.+.+....+.+=.+..+..+...+-+.
T Consensus 213 ~is~~~~G~a~af~lSQ~~vvIStlgGI 240 (269)
T PF06800_consen 213 LISAQKNGVATAFTLSQLGVVISTLGGI 240 (269)
T ss_pred HHhHHhccchhhhhHHhHHHHHHHhhhh
Confidence 7888888888887777777777665443
No 63
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=46.12 E-value=58 Score=23.22 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=20.0
Q ss_pred HhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218 84 GLYLASSTMGTAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 84 gl~~t~a~~asil~~~~Pv~~~lla~~~ 111 (174)
++...+...++.+.+..|++.++++..+
T Consensus 61 ~i~~~~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 61 EIPESSLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred EeccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556678888889998888876544
No 64
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=44.96 E-value=89 Score=21.74 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218 71 LIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112 (174)
Q Consensus 71 ~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~ 112 (174)
+.|..+|..+...|+.-.+|++++=..-..-++.-+.+++++
T Consensus 15 ~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlfR 56 (104)
T PF11460_consen 15 LLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLFR 56 (104)
T ss_pred HHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHhh
Confidence 467778888889999999999887543333334444455555
No 65
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=44.76 E-value=63 Score=23.93 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=20.1
Q ss_pred hHhhcchhhHHHHhhhhHHHHHHHHHHH
Q 041218 83 EGLYLASSTMGTAMGNLIPAITFVLAAI 110 (174)
Q Consensus 83 ~gl~~t~a~~asil~~~~Pv~~~lla~~ 110 (174)
.++...+.-.++.+.|..|++.++.+..
T Consensus 67 v~i~e~~llkaa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 67 LGIAEGSLLRSALLVYMTPLVGLFLGAA 94 (154)
T ss_pred EecchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566667888888888888876543
No 66
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=41.11 E-value=1.3e+02 Score=25.93 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHh-C--CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc---chhHHHHHHHHHHHHHHHH
Q 041218 4 LGLQCSYAGVAVFTGAALL-Q--GMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPL---GFKSFSLIFLTALIVITIN 77 (174)
Q Consensus 4 ~~~~~~wg~~~v~~K~~l~-~--~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~lg~~g~~~~ 77 (174)
++.++.+|.+.+..|.=.+ + .+|--.+-.+=-++..+++.|..+....... ++. +..+...+++.|++|..+-
T Consensus 253 L~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~-e~F~lP~~~q~~~vv~~~ligtvvS 331 (416)
T KOG2765|consen 253 LLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGE-ERFELPSSTQFSLVVFNNLIGTVVS 331 (416)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhcc-CcccCCCCceeEeeeHhhHHHHHHH
Confidence 4567899999999887553 2 4666666666667777777776555433222 222 2344556678899999999
Q ss_pred HHHHHhHhhcchhhHHHHhhh-hHHHHH
Q 041218 78 QNMFYEGLYLASSTMGTAMGN-LIPAIT 104 (174)
Q Consensus 78 ~~~~~~gl~~t~a~~asil~~-~~Pv~~ 104 (174)
-+++.+|.-.|++-.+++=++ ++|.-.
T Consensus 332 DylW~~a~~lTs~Lv~TlgmSltIPLA~ 359 (416)
T KOG2765|consen 332 DYLWAKAVLLTSPLVVTLGMSLTIPLAM 359 (416)
T ss_pred HHHHHHHHHhccchhheeeeeEeeeHHH
Confidence 999999999999999987544 566543
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=26.81 E-value=1.9e+02 Score=19.08 Aligned_cols=42 Identities=7% Similarity=-0.026 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhHhhcchhhHH-HHhhhhHHHHHHHHHHHH
Q 041218 70 ALIVITINQNMFYEGLYLASSTMG-TAMGNLIPAITFVLAAIV 111 (174)
Q Consensus 70 g~~g~~~~~~~~~~gl~~t~a~~a-sil~~~~Pv~~~lla~~~ 111 (174)
.+.+....+.++..++++.+.+.+ ++...+..+.+.+.+.++
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~ 77 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFF 77 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667777888899999998888 566667777777776643
No 68
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.45 E-value=2.5e+02 Score=23.42 Aligned_cols=44 Identities=16% Similarity=-0.022 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHhhhcchhhhhhhcCch-hHHHHHHHHHHHHHHHHHHHHhC
Q 041218 113 SCCWSLWPILQVLKKSSNSLLKTNCVS-VSLTVCMGFFATIQSAIVTLFLE 162 (174)
Q Consensus 113 ~~~~a~y~i~~~~~~~~~~~~~~~~~~-l~~t~~~~l~g~~~~~~~~~~~~ 162 (174)
+++-|+..+..| |......|. ..+++|..+.+.++++|...+.+
T Consensus 194 Sl~vAlnaiytk------k~l~~v~~~iw~lt~ynnv~a~lLflpll~lng 238 (347)
T KOG1442|consen 194 SLAVALNAIYTK------KVLPPVGDCIWRLTAYNNVNALLLFLPLLILNG 238 (347)
T ss_pred HHHHHHHHHhhh------eecccccCeehhhHHHHHHHHHHHHHHHHHHcc
Confidence 555566666666 555444443 46899999999999999877654
No 69
>COG4139 BtuC ABC-type cobalamin transport system, permease component [Coenzyme metabolism]
Probab=21.41 E-value=4.5e+02 Score=21.32 Aligned_cols=58 Identities=17% Similarity=0.039 Sum_probs=29.3
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 041218 19 AALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQN 79 (174)
Q Consensus 19 ~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~ 79 (174)
..+.+|..|.+....--.++++++-.+...+.||.+ .+.+-+.--..+|+++.+....
T Consensus 105 vL~~~~l~~~~a~~~~Ai~GALl~TliLl~~aRr~~---lTarLLLvGVALGIi~~A~mTW 162 (326)
T COG4139 105 VLLGQGQLPNWALGLCAIAGALIITLILLRFARRHL---STSRLLLAGVALGIICSALMTW 162 (326)
T ss_pred HHhcCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHh
Confidence 334455666655555555666665555444444332 2233333334566666565543
No 70
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=5.5e+02 Score=22.20 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----HHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 041218 9 SYAGVAVFTGAALLQGMSPRGSVVYRQAMA-----TLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYE 83 (174)
Q Consensus 9 ~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~ 83 (174)
.|+.+.-+.|.+.++ +.-.+.---...++ +++-+..++ ++ .|++-++..-.....+-++|. .+.|.
T Consensus 200 gWs~slY~i~ql~~n-Lq~Iwieyr~yvLgYvlivgliSfaVCY--K~--GPp~d~RS~~ilmWtLqli~l----vl~Yf 270 (452)
T KOG3817|consen 200 GWSISLYVIKQLADN-LQLIWIEYRDYVLGYVLIVGLISFAVCY--KI--GPPKDPRSQTILMWTLQLIGL----VLAYF 270 (452)
T ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh--cc--CCCCCcchhhHHHHHHHHHHH----HHHHH
Confidence 577777788887754 54444333333333 222233333 22 112222222122223344442 33468
Q ss_pred HhhcchhhHHHHhhhhH
Q 041218 84 GLYLASSTMGTAMGNLI 100 (174)
Q Consensus 84 gl~~t~a~~asil~~~~ 100 (174)
|.+...++.|.+|+.+.
T Consensus 271 svq~p~~a~A~iI~~lc 287 (452)
T KOG3817|consen 271 SVQHPSAAIAAIIMVLC 287 (452)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999888776543
Done!