Query 041218
Match_columns 174
No_of_seqs 174 out of 1152
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:53:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 93.9 0.11 3.8E-06 36.9 5.5 45 68-112 34-79 (137)
2 3b5d_A Multidrug transporter E 91.3 0.68 2.3E-05 31.3 6.5 44 68-111 34-78 (110)
3 3fbl_A Putative uncharacterize 8.5 1.7E+02 0.0057 17.6 1.5 18 113-136 19-36 (82)
4 3tij_A NUPC family protein; me 6.0 1.1E+03 0.039 19.4 6.6 31 32-64 9-39 (424)
5 1q90_R Cytochrome B6-F complex 5.9 4.6E+02 0.016 14.7 3.6 21 56-76 7-27 (49)
6 2j7a_C Cytochrome C quinol deh 3.6 2.1E+02 0.0071 19.8 -0.2 30 63-92 12-41 (159)
7 1rh5_B Preprotein translocase 3.3 9.2E+02 0.031 14.6 3.6 12 66-77 45-56 (74)
8 3arc_T Photosystem II reaction 2.9 7.3E+02 0.025 12.6 4.1 17 147-163 9-25 (32)
9 1pi7_A VPU protein, U ORF prot 2.2 9.8E+02 0.033 12.3 2.7 23 1-23 13-35 (36)
10 2kdc_A Diacylglycerol kinase; 2.0 1.4E+03 0.048 15.0 2.6 28 143-170 30-57 (121)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=93.88 E-value=0.11 Score=36.89 Aligned_cols=45 Identities=9% Similarity=0.006 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhHhhcchhhHHHHh-hhhHHHHHHHHHHHHH
Q 041218 68 LTALIVITINQNMFYEGLYLASSTMGTAM-GNLIPAITFVLAAIVG 112 (174)
Q Consensus 68 ~lg~~g~~~~~~~~~~gl~~t~a~~asil-~~~~Pv~~~lla~~~~ 112 (174)
++|+++..+.+.++..++++.+++.+..+ .++.|+++.++++++.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~l 79 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF 79 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888899999999999999999999887 8999999999988653
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=91.34 E-value=0.68 Score=31.29 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhHhhcchhhHHHHh-hhhHHHHHHHHHHHH
Q 041218 68 LTALIVITINQNMFYEGLYLASSTMGTAM-GNLIPAITFVLAAIV 111 (174)
Q Consensus 68 ~lg~~g~~~~~~~~~~gl~~t~a~~asil-~~~~Pv~~~lla~~~ 111 (174)
+.++++....+.++..++++.+.+.+..+ ..+.|+++.++++++
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~ 78 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF 78 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH
Confidence 57788888899999999999999999777 799999999988743
No 3
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=8.47 E-value=1.7e+02 Score=17.61 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=14.5
Q ss_pred HHHHhHHHHHHhhhcchhhhhhhc
Q 041218 113 SCCWSLWPILQVLKKSSNSLLKTN 136 (174)
Q Consensus 113 ~~~~a~y~i~~~~~~~~~~~~~~~ 136 (174)
-+-|+.|+.++. |++|.|
T Consensus 19 nikwgmyiafge------kllksy 36 (82)
T 3fbl_A 19 NIKWGMYIAFGE------KLLKSY 36 (82)
T ss_dssp GGGHHHHHHHHH------HHHHHH
T ss_pred cchhHHHHHHHH------HHHHHH
Confidence 466999999988 787776
No 4
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=5.96 E-value=1.1e+03 Score=19.36 Aligned_cols=31 Identities=10% Similarity=0.307 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCcchhHHH
Q 041218 32 VYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFS 64 (174)
Q Consensus 32 ~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (174)
.+|.+++.++++.+++..-++ | +++++|...
T Consensus 9 ~l~sl~Gi~v~l~ia~l~S~n-r-k~I~wr~V~ 39 (424)
T 3tij_A 9 LFMSLIGMAVLLGIAVLLSSN-R-KAINLRTVG 39 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHCSC-G-GGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-c-ccCChHHHH
Confidence 467777777776666664322 2 356666543
No 5
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=5.91 E-value=4.6e+02 Score=14.66 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=13.6
Q ss_pred CCcchhHHHHHHHHHHHHHHH
Q 041218 56 PPLGFKSFSLIFLTALIVITI 76 (174)
Q Consensus 56 ~~~~~~~~~~~~~lg~~g~~~ 76 (174)
+..++|++...+.+|..+...
T Consensus 7 pdm~RRqfln~l~~G~~a~~a 27 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPI 27 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 456678777777777665433
No 6
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=3.60 E-value=2.1e+02 Score=19.79 Aligned_cols=30 Identities=7% Similarity=-0.056 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcchhhH
Q 041218 63 FSLIFLTALIVITINQNMFYEGLYLASSTM 92 (174)
Q Consensus 63 ~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~ 92 (174)
++.+++.|++...+....+..++.+++...
T Consensus 12 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 41 (159)
T 2j7a_C 12 RLKLVLGGATLGVVALATVAFGMKYTDQRP 41 (159)
T ss_dssp --CCSTTTHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhccCCCc
Confidence 334445555433333444566777765443
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=3.32 E-value=9.2e+02 Score=14.60 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 041218 66 IFLTALIVITIN 77 (174)
Q Consensus 66 ~~~lg~~g~~~~ 77 (174)
++++|++|....
T Consensus 45 ~~imG~IGfiIk 56 (74)
T 1rh5_B 45 ISLLGIIGYIIH 56 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555554333
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=2.89 E-value=7.3e+02 Score=12.59 Aligned_cols=17 Identities=18% Similarity=0.254 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhCC
Q 041218 147 GFFATIQSAIVTLFLEP 163 (174)
Q Consensus 147 ~l~g~~~~~~~~~~~~~ 163 (174)
.+++++..+.++.++.+
T Consensus 9 ll~~tlgiiFFAI~FRe 25 (32)
T 3arc_T 9 IFACIIALFFFAIFFRE 25 (32)
T ss_dssp HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhhhhcC
Confidence 34455555666776643
No 9
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=2.17 E-value=9.8e+02 Score=12.35 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhC
Q 041218 1 MAMLGLQCSYAGVAVFTGAALLQ 23 (174)
Q Consensus 1 ~~l~~~~~~wg~~~v~~K~~l~~ 23 (174)
.+++++.+.|...+.=-|....+
T Consensus 13 valIiaIVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 13 VAIIIAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
No 10
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=2.04 E-value=1.4e+03 Score=15.00 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 041218 143 TVCMGFFATIQSAIVTLFLEPDPESWAL 170 (174)
Q Consensus 143 t~~~~l~g~~~~~~~~~~~~~~~~~w~~ 170 (174)
.+-+-+..++...+.+++.+.+..+|.+
T Consensus 30 ~fr~~~~~~~~~i~~~~~l~~s~~e~~~ 57 (121)
T 2kdc_A 30 AFRQEGVAVLLAVVIACWLDVDAITRVL 57 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHH
Done!