Query 041218
Match_columns 174
No_of_seqs 174 out of 1152
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 07:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041218.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041218hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjd2 f.23.11.1 (D:196-241) 4.6 2.6E+02 0.019 14.1 2.6 22 32-53 10-31 (46)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 4.5 2.1E+02 0.015 12.8 4.0 19 144-162 5-24 (30)
3 d1rh5b_ f.23.28.1 (B:) Preprot 3.2 4.1E+02 0.03 14.0 3.3 12 66-77 34-45 (56)
4 d1vqqa1 d.17.4.5 (A:27-138) Pe 2.5 1.7E+02 0.013 17.6 0.1 7 167-173 96-102 (112)
5 d1r7ma2 d.95.2.1 (A:121-225) D 2.3 3.7E+02 0.027 15.6 1.6 24 127-150 3-26 (105)
6 d1w53a_ a.186.1.2 (A:) Phospho 1.7 8.1E+02 0.059 13.7 2.7 22 15-36 32-53 (84)
7 d2nysa1 b.136.1.2 (A:3-119) Un 1.6 2E+02 0.014 17.8 -0.8 10 129-138 51-60 (117)
8 d1q90r_ f.23.12.1 (R:) ISP sub 1.6 6.4E+02 0.047 12.1 3.6 18 56-73 5-22 (39)
9 d1qled_ f.23.8.1 (D:) Bacteria 1.5 6.9E+02 0.051 12.2 2.6 16 31-46 23-38 (43)
10 d3cx5d2 f.23.11.1 (D:261-307) 1.5 7.2E+02 0.053 12.3 2.6 18 34-51 12-29 (47)
No 1
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.64 E-value=2.6e+02 Score=14.11 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 041218 32 VYRQAMATLIIAPIAYFSRRKS 53 (174)
Q Consensus 32 ~~R~~ia~~~l~~~~~~~~~~~ 53 (174)
.++..+...++..++++.+|..
T Consensus 10 G~Kv~~~l~~l~~l~yy~KR~~ 31 (46)
T d1ppjd2 10 GLKMLLMMGLLLPLVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666555543
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.54 E-value=2.1e+02 Score=12.82 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH-HHHHhC
Q 041218 144 VCMGFFATIQSAI-VTLFLE 162 (174)
Q Consensus 144 ~~~~l~g~~~~~~-~~~~~~ 162 (174)
+|..+++++..+. ++.++.
T Consensus 5 ~yv~ifac~i~lfffaiffr 24 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred ehHHHHHHHHHHHHHHHHhc
Confidence 4555555555433 445443
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.16 E-value=4.1e+02 Score=13.98 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 041218 66 IFLTALIVITIN 77 (174)
Q Consensus 66 ~~~lg~~g~~~~ 77 (174)
++++|++|...+
T Consensus 34 ~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 34 ISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555554443
No 4
>d1vqqa1 d.17.4.5 (A:27-138) Penicillin binding protein 2a (PBP2A), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=2.45 E-value=1.7e+02 Score=17.64 Aligned_cols=7 Identities=29% Similarity=0.739 Sum_probs=3.4
Q ss_pred CcccCCC
Q 041218 167 SWALHTN 173 (174)
Q Consensus 167 ~w~~~~~ 173 (174)
+|.+.|+
T Consensus 96 ~Wkv~W~ 102 (112)
T d1vqqa1 96 MWKLDWD 102 (112)
T ss_dssp SEEECCC
T ss_pred CEEEEeC
Confidence 3555544
No 5
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.32 E-value=3.7e+02 Score=15.60 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=15.7
Q ss_pred cchhhhhhhcCchhHHHHHHHHHH
Q 041218 127 KSSNSLLKTNCVSVSLTVCMGFFA 150 (174)
Q Consensus 127 ~~~~~~~~~~~~~l~~t~~~~l~g 150 (174)
.+|+.+.+++=+|..++.|-|-=|
T Consensus 3 ~iP~~li~~~Ltp~~LA~W~MDDG 26 (105)
T d1r7ma2 3 TIPNNLVENYLTPMSLAYWFMDDG 26 (105)
T ss_dssp CCCTTHHHHHCCHHHHHHHHHHHE
T ss_pred cCCHHHHHhhCCHHHHHheEecCC
Confidence 456666655435888888877544
No 6
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=1.67 E-value=8.1e+02 Score=13.71 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCChHHHHHHHHH
Q 041218 15 VFTGAALLQGMSPRGSVVYRQA 36 (174)
Q Consensus 15 v~~K~~l~~~~~p~~l~~~R~~ 36 (174)
=++|.++..+++|-.++.+-.-
T Consensus 32 ~fsre~iek~IsPEeIV~iHk~ 53 (84)
T d1w53a_ 32 KFSRKTIEHQIPPEEIISIHRK 53 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3678888888999988766543
No 7
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=1.58 E-value=2e+02 Score=17.83 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=6.1
Q ss_pred hhhhhhhcCc
Q 041218 129 SNSLLKTNCV 138 (174)
Q Consensus 129 ~~~~~~~~~~ 138 (174)
|+++.++||+
T Consensus 51 p~~L~~~YPe 60 (117)
T d2nysa1 51 SQHLKSKYAE 60 (117)
T ss_dssp CHHHHHHSSS
T ss_pred CHHHHhhCCC
Confidence 5566666664
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.55 E-value=6.4e+02 Score=12.08 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=11.1
Q ss_pred CCcchhHHHHHHHHHHHH
Q 041218 56 PPLGFKSFSLIFLTALIV 73 (174)
Q Consensus 56 ~~~~~~~~~~~~~lg~~g 73 (174)
+...+|++.-++..|..+
T Consensus 5 pDMgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAG 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccc
Confidence 345567777777666543
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=1.49 E-value=6.9e+02 Score=12.22 Aligned_cols=16 Identities=0% Similarity=-0.047 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 041218 31 VVYRQAMATLIIAPIA 46 (174)
Q Consensus 31 ~~~R~~ia~~~l~~~~ 46 (174)
-.-|..++.+.++.+.
T Consensus 23 ~~t~~~i~~i~~lifl 38 (43)
T d1qled_ 23 GATWVSILSIAVLVFL 38 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3446666666655543
No 10
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.46 E-value=7.2e+02 Score=12.34 Aligned_cols=18 Identities=0% Similarity=0.165 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 041218 34 RQAMATLIIAPIAYFSRR 51 (174)
Q Consensus 34 R~~ia~~~l~~~~~~~~~ 51 (174)
..++...++..++.+.+|
T Consensus 12 K~~~i~s~l~~~~~y~KR 29 (47)
T d3cx5d2 12 KTVIILSSLYLLSIWVKK 29 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444455555444
Done!