Query 041224
Match_columns 400
No_of_seqs 249 out of 1787
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 6.1E-81 1.3E-85 618.5 49.7 369 27-399 47-424 (443)
2 PLN02155 polygalacturonase 100.0 6.8E-79 1.5E-83 594.8 46.9 365 27-399 22-393 (394)
3 PLN03010 polygalacturonase 100.0 1E-78 2.2E-83 594.7 47.8 361 29-399 43-404 (409)
4 PLN03003 Probable polygalactur 100.0 1.1E-78 2.3E-83 597.5 42.9 367 29-399 20-390 (456)
5 PLN02218 polygalacturonase ADP 100.0 5.7E-78 1.2E-82 594.6 46.2 359 27-398 62-431 (431)
6 PLN02188 polygalacturonase/gly 100.0 9.3E-76 2E-80 575.2 45.4 362 28-398 32-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.1E-58 2.3E-63 448.1 32.4 316 60-386 1-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1E-42 2.2E-47 347.1 27.6 271 27-310 77-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 8.4E-26 1.8E-30 219.0 24.7 248 28-303 33-338 (455)
10 PLN02793 Probable polygalactur 99.9 1.1E-19 2.3E-24 181.2 28.4 219 92-342 144-397 (443)
11 PLN02188 polygalacturonase/gly 99.9 2.1E-19 4.6E-24 177.1 29.2 221 92-342 123-377 (404)
12 PF12708 Pectate_lyase_3: Pect 99.9 1.9E-20 4.1E-25 171.8 19.8 207 32-278 1-224 (225)
13 PLN03003 Probable polygalactur 99.9 5E-19 1.1E-23 175.2 29.0 207 150-382 104-343 (456)
14 PLN03010 polygalacturonase 99.9 8.2E-19 1.8E-23 172.6 30.2 231 124-382 105-360 (409)
15 PLN02218 polygalacturonase ADP 99.9 3.7E-19 8E-24 176.6 27.9 206 151-382 148-394 (431)
16 PF03718 Glyco_hydro_49: Glyco 99.8 1.3E-18 2.9E-23 170.3 28.3 289 66-396 232-574 (582)
17 PF00295 Glyco_hydro_28: Glyco 99.8 1.9E-19 4E-24 174.5 22.1 218 92-341 61-310 (326)
18 PLN02155 polygalacturonase 99.8 1.8E-18 3.9E-23 169.8 26.6 219 92-342 116-366 (394)
19 TIGR03805 beta_helix_1 paralle 99.7 7.5E-14 1.6E-18 134.3 27.7 39 52-99 1-40 (314)
20 COG5434 PGU1 Endopygalactoruna 99.3 2.4E-11 5.2E-16 122.6 15.3 154 172-342 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 99.3 7.2E-10 1.6E-14 106.8 22.2 162 124-303 32-203 (314)
22 PF12541 DUF3737: Protein of u 98.8 9.2E-08 2E-12 86.9 13.3 124 155-306 94-228 (277)
23 COG3866 PelB Pectate lyase [Ca 98.7 2.7E-06 5.9E-11 78.8 19.3 156 93-296 77-249 (345)
24 PF03718 Glyco_hydro_49: Glyco 98.7 5E-06 1.1E-10 82.8 22.2 242 66-341 256-553 (582)
25 PF12541 DUF3737: Protein of u 98.7 3.5E-07 7.6E-12 83.2 12.9 100 153-279 131-230 (277)
26 PF13229 Beta_helix: Right han 98.6 9.9E-07 2.1E-11 75.6 12.6 139 152-309 2-144 (158)
27 TIGR03808 RR_plus_rpt_1 twin-a 98.5 7.2E-06 1.6E-10 80.8 16.9 144 152-308 108-289 (455)
28 PRK10123 wcaM putative colanic 98.5 5.1E-06 1.1E-10 76.4 14.4 279 29-370 31-349 (464)
29 PF13229 Beta_helix: Right han 98.5 3E-06 6.5E-11 72.5 12.3 139 119-282 4-146 (158)
30 PLN02497 probable pectinestera 98.4 3.7E-05 8.1E-10 73.9 20.5 237 2-303 4-264 (331)
31 PLN02176 putative pectinestera 98.4 7.4E-05 1.6E-09 72.2 22.5 201 47-303 49-271 (340)
32 PF14592 Chondroitinas_B: Chon 98.4 2.1E-05 4.5E-10 77.5 18.6 183 48-282 3-222 (425)
33 smart00656 Amb_all Amb_all dom 98.4 1.2E-05 2.7E-10 71.8 15.3 114 181-298 39-166 (190)
34 PF05048 NosD: Periplasmic cop 98.4 1.9E-05 4.2E-10 73.1 16.6 113 152-280 37-151 (236)
35 PF05048 NosD: Periplasmic cop 98.3 3.9E-05 8.6E-10 71.0 16.9 134 152-308 15-150 (236)
36 PLN02682 pectinesterase family 98.3 0.00015 3.2E-09 70.8 20.2 214 47-306 80-308 (369)
37 PLN02480 Probable pectinestera 98.2 0.00028 6E-09 68.4 21.6 201 47-303 58-277 (343)
38 PLN02773 pectinesterase 98.2 0.00019 4.1E-09 68.8 19.2 211 48-303 16-240 (317)
39 PLN02634 probable pectinestera 98.2 0.00061 1.3E-08 66.1 22.6 211 47-303 66-291 (359)
40 PF07602 DUF1565: Protein of u 98.1 0.00021 4.6E-09 65.9 16.7 41 48-98 14-59 (246)
41 smart00656 Amb_all Amb_all dom 98.1 0.00036 7.8E-09 62.4 17.3 135 152-297 33-188 (190)
42 PF00544 Pec_lyase_C: Pectate 98.0 5.9E-05 1.3E-09 68.1 11.5 76 198-274 73-158 (200)
43 PLN02665 pectinesterase family 98.0 0.0022 4.8E-08 62.7 23.0 205 47-303 78-298 (366)
44 COG3420 NosD Nitrous oxidase a 97.9 0.0022 4.8E-08 60.7 19.2 116 116-239 70-188 (408)
45 PLN02708 Probable pectinestera 97.9 0.0014 3E-08 67.8 19.2 153 47-242 251-409 (553)
46 PLN02304 probable pectinestera 97.8 0.0042 9E-08 60.8 20.9 208 43-303 82-312 (379)
47 PLN02671 pectinesterase 97.8 0.0039 8.4E-08 60.7 20.2 213 47-303 69-295 (359)
48 PF01095 Pectinesterase: Pecti 97.8 0.0006 1.3E-08 65.3 14.4 210 47-306 10-239 (298)
49 PRK10531 acyl-CoA thioesterase 97.8 0.0032 7E-08 62.4 19.8 237 41-303 87-376 (422)
50 PLN02170 probable pectinestera 97.8 0.0043 9.3E-08 63.3 20.9 206 47-303 235-452 (529)
51 PLN02468 putative pectinestera 97.8 0.0027 5.9E-08 65.8 19.6 211 47-304 268-491 (565)
52 PLN02197 pectinesterase 97.8 0.0026 5.6E-08 66.0 19.3 215 47-304 285-515 (588)
53 PF12708 Pectate_lyase_3: Pect 97.7 0.0015 3.2E-08 59.5 15.5 122 162-307 95-224 (225)
54 PLN02484 probable pectinestera 97.7 0.0048 1E-07 64.2 20.8 213 47-306 282-512 (587)
55 PLN02745 Putative pectinestera 97.7 0.0041 8.9E-08 64.8 20.1 210 47-303 295-521 (596)
56 PLN02201 probable pectinestera 97.7 0.0049 1.1E-07 63.0 20.1 215 43-305 213-444 (520)
57 PLN02933 Probable pectinestera 97.7 0.0055 1.2E-07 62.7 20.2 211 47-304 228-455 (530)
58 COG3866 PelB Pectate lyase [Ca 97.7 0.0079 1.7E-07 56.3 19.3 111 180-307 152-280 (345)
59 PLN02432 putative pectinestera 97.7 0.011 2.5E-07 56.1 20.7 200 48-303 22-230 (293)
60 PLN02416 probable pectinestera 97.6 0.0056 1.2E-07 63.1 19.7 211 47-303 240-466 (541)
61 PLN02314 pectinesterase 97.6 0.0047 1E-07 64.4 19.3 213 47-306 288-512 (586)
62 PLN02916 pectinesterase family 97.6 0.0069 1.5E-07 61.5 19.8 211 47-304 197-427 (502)
63 PLN02506 putative pectinestera 97.6 0.0046 1E-07 63.6 18.8 207 47-303 242-459 (537)
64 PLN02713 Probable pectinestera 97.6 0.0062 1.3E-07 63.1 19.6 211 47-304 260-490 (566)
65 PLN02217 probable pectinestera 97.6 0.0063 1.4E-07 63.9 19.8 213 47-304 260-487 (670)
66 PLN02995 Probable pectinestera 97.6 0.0077 1.7E-07 62.1 19.7 214 47-306 233-464 (539)
67 PLN02301 pectinesterase/pectin 97.6 0.0052 1.1E-07 63.3 18.4 210 47-303 246-472 (548)
68 PLN02488 probable pectinestera 97.6 0.01 2.2E-07 60.1 20.1 211 47-303 207-433 (509)
69 PLN02990 Probable pectinestera 97.5 0.011 2.4E-07 61.4 19.5 215 47-306 269-499 (572)
70 PLN02313 Pectinesterase/pectin 97.5 0.008 1.7E-07 62.6 18.5 212 47-303 285-511 (587)
71 PF00544 Pec_lyase_C: Pectate 97.3 0.0021 4.5E-08 58.0 10.7 91 153-243 39-157 (200)
72 PLN03043 Probable pectinestera 97.3 0.021 4.4E-07 59.0 19.1 215 43-306 230-465 (538)
73 PF01696 Adeno_E1B_55K: Adenov 97.2 0.076 1.6E-06 52.0 20.5 157 34-248 45-205 (386)
74 PF12218 End_N_terminal: N ter 97.0 0.00095 2.1E-08 46.8 3.7 38 40-82 1-38 (67)
75 PLN02682 pectinesterase family 96.5 0.25 5.4E-06 48.5 17.9 112 179-303 160-280 (369)
76 COG4677 PemB Pectin methyleste 96.0 0.26 5.6E-06 46.8 14.0 48 47-99 92-141 (405)
77 PF14592 Chondroitinas_B: Chon 94.2 0.81 1.8E-05 45.6 12.5 126 157-294 97-253 (425)
78 PF03211 Pectate_lyase: Pectat 93.9 2.1 4.6E-05 38.7 13.5 128 182-336 61-194 (215)
79 PF09251 PhageP22-tail: Salmon 93.8 7.7 0.00017 38.5 19.9 82 208-304 263-368 (549)
80 PLN02480 Probable pectinestera 92.6 2.9 6.4E-05 40.8 13.2 112 180-303 130-252 (343)
81 TIGR03804 para_beta_helix para 91.1 0.32 6.9E-06 32.1 3.4 39 176-219 2-40 (44)
82 TIGR03804 para_beta_helix para 91.1 0.49 1.1E-05 31.2 4.4 39 202-241 1-39 (44)
83 PF03211 Pectate_lyase: Pectat 89.9 15 0.00032 33.4 15.7 131 160-297 62-194 (215)
84 PF01696 Adeno_E1B_55K: Adenov 89.6 17 0.00036 36.0 15.1 86 178-278 117-204 (386)
85 PLN02468 putative pectinestera 88.5 12 0.00025 39.3 14.1 112 179-304 342-461 (565)
86 PLN02176 putative pectinestera 88.4 9.6 0.00021 37.2 12.6 110 180-303 120-246 (340)
87 PLN02665 pectinesterase family 88.3 9.6 0.00021 37.6 12.6 114 178-304 150-273 (366)
88 PLN02170 probable pectinestera 87.7 12 0.00026 38.7 13.3 113 178-304 309-428 (529)
89 PLN02634 probable pectinestera 87.6 9.4 0.0002 37.5 12.0 110 180-303 147-266 (359)
90 PLN02916 pectinesterase family 87.5 12 0.00027 38.4 13.2 114 179-304 274-393 (502)
91 PF01095 Pectinesterase: Pecti 86.8 6 0.00013 37.9 10.2 111 180-303 85-202 (298)
92 PRK10531 acyl-CoA thioesterase 86.7 14 0.00031 37.0 12.9 115 178-303 202-336 (422)
93 PLN02671 pectinesterase 86.7 9.9 0.00021 37.4 11.6 111 180-303 152-270 (359)
94 PLN02432 putative pectinestera 86.6 12 0.00026 35.7 11.9 110 179-302 91-204 (293)
95 PRK10123 wcaM putative colanic 86.3 3 6.6E-05 39.1 7.4 93 203-302 262-373 (464)
96 PLN02506 putative pectinestera 86.3 9.9 0.00021 39.5 12.0 112 178-303 315-434 (537)
97 COG3420 NosD Nitrous oxidase a 85.9 10 0.00022 36.6 10.8 111 118-240 123-233 (408)
98 PLN02217 probable pectinestera 85.8 9.5 0.00021 40.6 11.7 111 180-303 335-452 (670)
99 PLN02713 Probable pectinestera 85.7 13 0.00028 39.0 12.6 111 180-303 338-455 (566)
100 PF07602 DUF1565: Protein of u 85.6 31 0.00067 32.1 14.0 104 176-310 91-195 (246)
101 PLN02488 probable pectinestera 85.3 23 0.00049 36.5 13.7 113 180-304 282-400 (509)
102 PLN02698 Probable pectinestera 85.2 16 0.00035 37.7 12.8 142 155-306 266-422 (497)
103 PLN02201 probable pectinestera 85.0 22 0.00047 36.9 13.6 113 179-303 290-408 (520)
104 PLN02933 Probable pectinestera 84.9 15 0.00034 38.0 12.5 113 179-303 302-420 (530)
105 PLN02301 pectinesterase/pectin 84.7 15 0.00033 38.3 12.5 111 179-303 320-438 (548)
106 PLN03043 Probable pectinestera 84.7 22 0.00048 37.0 13.7 113 178-303 309-428 (538)
107 PLN02745 Putative pectinestera 84.3 19 0.00042 38.0 13.1 112 179-304 369-488 (596)
108 PLN02698 Probable pectinestera 82.7 37 0.0008 35.1 14.2 112 179-304 267-386 (497)
109 PLN02313 Pectinesterase/pectin 82.3 19 0.0004 38.0 12.1 111 180-304 360-478 (587)
110 PLN02484 probable pectinestera 82.2 21 0.00046 37.6 12.4 111 179-303 357-475 (587)
111 PLN02995 Probable pectinestera 82.2 18 0.00039 37.7 11.8 111 180-303 310-427 (539)
112 PLN02314 pectinesterase 81.8 20 0.00044 37.7 12.2 113 179-304 362-481 (586)
113 PLN02304 probable pectinestera 81.7 35 0.00076 33.8 13.0 110 180-302 160-286 (379)
114 PF08480 Disaggr_assoc: Disagg 80.9 27 0.00059 30.8 10.5 15 260-274 32-46 (198)
115 PLN02773 pectinesterase 79.5 44 0.00095 32.4 12.7 113 178-304 98-213 (317)
116 PLN02416 probable pectinestera 78.0 15 0.00031 38.4 9.5 111 179-303 314-432 (541)
117 PLN02197 pectinesterase 77.4 19 0.00041 37.9 10.2 113 179-304 361-481 (588)
118 PF13956 Ibs_toxin: Toxin Ibs, 75.0 1.7 3.7E-05 22.8 0.9 16 1-16 1-16 (19)
119 PF09251 PhageP22-tail: Salmon 71.0 1.2E+02 0.0026 30.5 14.4 68 231-300 263-347 (549)
120 TIGR03656 IsdC heme uptake pro 66.2 14 0.0003 33.5 5.4 69 1-79 1-70 (217)
121 PF08480 Disaggr_assoc: Disagg 62.7 1.1E+02 0.0024 27.1 10.4 14 231-244 63-76 (198)
122 PLN02990 Probable pectinestera 59.2 1.5E+02 0.0032 31.3 12.2 112 180-304 345-463 (572)
123 smart00710 PbH1 Parallel beta- 51.6 21 0.00045 19.4 2.8 12 210-221 3-14 (26)
124 PLN02708 Probable pectinestera 49.6 2.7E+02 0.0059 29.2 12.4 113 179-304 327-450 (553)
125 COG5510 Predicted small secret 43.8 15 0.00032 24.2 1.3 14 5-18 8-21 (44)
126 COG4677 PemB Pectin methyleste 42.9 1E+02 0.0022 29.9 7.1 37 157-193 187-232 (405)
127 COG5567 Predicted small peripl 38.4 38 0.00082 23.5 2.7 21 1-21 1-22 (58)
128 COG4531 ZnuA ABC-type Zn2+ tra 38.3 33 0.00072 32.2 3.2 63 1-81 2-67 (318)
129 COG4588 AcfC Accessory coloniz 37.5 70 0.0015 28.9 4.9 55 1-74 1-55 (252)
130 PF15284 PAGK: Phage-encoded v 37.0 23 0.0005 25.1 1.5 17 1-17 1-17 (61)
131 PRK09810 entericidin A; Provis 35.1 28 0.00061 22.7 1.6 10 47-56 27-36 (41)
132 PF11912 DUF3430: Protein of u 33.8 39 0.00084 30.2 3.0 30 1-39 1-30 (212)
133 TIGR03042 PS_II_psbQ_bact phot 33.3 35 0.00077 28.8 2.4 23 1-23 1-23 (142)
134 PF03032 Brevenin: Brevenin/es 32.3 26 0.00056 23.5 1.1 16 1-16 3-18 (46)
135 PF11948 DUF3465: Protein of u 31.8 77 0.0017 26.4 4.0 14 1-14 1-14 (131)
136 PLN02497 probable pectinestera 31.1 5.1E+02 0.011 25.3 13.4 112 179-303 112-239 (331)
137 smart00722 CASH Domain present 30.0 1.9E+02 0.0042 23.2 6.5 67 156-225 73-143 (146)
138 COG4189 Predicted transcriptio 30.0 4.5E+02 0.0098 24.3 10.7 27 46-84 140-168 (308)
139 PF14262 DUF4353: Domain of un 27.9 5.2E+02 0.011 24.3 13.3 33 66-100 6-45 (264)
140 PRK15346 outer membrane secret 25.8 99 0.0021 32.0 4.7 9 66-74 52-60 (499)
141 PRK09929 hypothetical protein; 25.6 1.7E+02 0.0037 22.8 4.7 12 1-12 1-12 (91)
142 PF11429 Colicin_D: Colicin D; 25.4 49 0.0011 25.7 1.8 39 35-79 9-48 (92)
143 PF12099 DUF3575: Protein of u 25.0 66 0.0014 28.6 2.8 17 1-17 1-17 (189)
144 TIGR02001 gcw_chp conserved hy 24.7 43 0.00094 31.1 1.6 21 36-56 42-62 (243)
145 PF02402 Lysis_col: Lysis prot 24.7 31 0.00068 22.7 0.5 11 1-11 1-11 (46)
146 PF12262 Lipase_bact_N: Bacter 24.5 84 0.0018 29.6 3.5 23 1-23 1-23 (268)
147 KOG1777 Putative Zn-finger pro 23.1 8.1E+02 0.018 25.0 13.6 206 50-313 33-252 (625)
148 TIGR03524 GldJ gliding motilit 23.1 65 0.0014 33.5 2.6 16 65-81 58-73 (559)
149 PF08194 DIM: DIM protein; In 23.0 1.1E+02 0.0024 19.3 2.7 14 1-14 1-14 (36)
150 PRK14762 membrane protein; Pro 22.0 74 0.0016 18.3 1.6 13 1-13 1-13 (27)
151 PRK13733 conjugal transfer pro 21.9 62 0.0013 28.2 1.9 21 1-21 1-21 (171)
152 PRK12618 flgA flagellar basal 21.6 47 0.001 28.1 1.1 16 1-16 1-16 (141)
153 PF12276 DUF3617: Protein of u 21.6 80 0.0017 26.9 2.6 15 1-15 1-15 (162)
154 PRK14599 trmD tRNA (guanine-N( 21.2 99 0.0021 28.2 3.1 47 31-79 34-93 (222)
155 TIGR02052 MerP mercuric transp 21.1 57 0.0012 23.8 1.4 15 1-15 1-15 (92)
156 PRK15348 type III secretion sy 20.8 1.3E+02 0.0029 28.0 4.0 30 45-74 28-62 (249)
157 TIGR00088 trmD tRNA (guanine-N 20.2 1E+02 0.0022 28.3 3.0 48 31-80 34-94 (233)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=6.1e-81 Score=618.48 Aligned_cols=369 Identities=46% Similarity=0.854 Sum_probs=343.1
Q ss_pred CCCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCC
Q 041224 27 PSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS 106 (400)
Q Consensus 27 ~~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~ 106 (400)
|..++++||+||||+|||.+|||+|||+||+++|++. +|++|+||+|++|++++|.|.++||| +++|+++|+|+++.+
T Consensus 47 ~~~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~-ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d 124 (443)
T PLN02793 47 PRSERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSK-VKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKD 124 (443)
T ss_pred CCCceEEEhhhcccCCCCCCccHHHHHHHHHHHhccC-CCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCC
Confidence 4445789999999999999999999999997689876 78999999996699999999999999 999999999999999
Q ss_pred -CCccCCCccccEEEeeeeceEEecCeeEeCCCccccccCC--------CCCCceEEEeeeCcEEEEceEEeCCCCceEE
Q 041224 107 -SAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQ--------NQRPTALSFGSCNNLVFRGLTHVDSPGNHIS 177 (400)
Q Consensus 107 -~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~--------~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~ 177 (400)
.+|++...++||.+.+++|++|+|.|+|||+|+.||...+ ..||+++.|.+|+|++|++++++|||+|+++
T Consensus 125 ~~~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~ 204 (443)
T PLN02793 125 PDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIA 204 (443)
T ss_pred hHHccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEE
Confidence 9998766678999999999999999999999999996422 2489999999999999999999999999999
Q ss_pred EEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224 178 VYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG 257 (400)
Q Consensus 178 ~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (400)
+.+|++++|++++|.++..++|+||||+.+|+||+|+||+|+++||||++|++++||+|+||.|..+||++|||+|+.+.
T Consensus 205 ~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~ 284 (443)
T PLN02793 205 FTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNS 284 (443)
T ss_pred EEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCC
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEEeE
Q 041224 258 TSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGF 337 (400)
Q Consensus 258 ~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI 337 (400)
.+.++||+|+||++.++.+|+|||+|++++|.|+||+|+||+|+++.+||.|+++|+....+|.+..+.+.|+||+|+||
T Consensus 285 ~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI 364 (443)
T PLN02793 285 WSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHI 364 (443)
T ss_pred CCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999876667877778899999999999
Q ss_pred EEecCCcceEEEEecCCCCeecEEEEeEEEEecCCCCCcceeeecceecccceeecCCCCCC
Q 041224 338 QGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCLL 399 (400)
Q Consensus 338 ~~~~~~~~~i~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 399 (400)
+++.....++.+.|+++.||+||+|+||+++..+ +......|.|++|...| .++||+|+.
T Consensus 365 ~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~-g~~~~~~C~n~~g~~~~-~~~p~~C~~ 424 (443)
T PLN02793 365 KGTSATEEAIKFACSDSSPCEGLYLEDVQLLSST-GDFTESFCWEAYGSSSG-QVYPPPCFS 424 (443)
T ss_pred EEEEcccccEEEEeCCCCCEeeEEEEeeEEEecC-CCCCCcEEEccEEeECC-eEcCCcccc
Confidence 9998766689999999999999999999999887 44667899999999999 888889973
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=6.8e-79 Score=594.81 Aligned_cols=365 Identities=41% Similarity=0.800 Sum_probs=335.1
Q ss_pred CCCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCC
Q 041224 27 PSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS 106 (400)
Q Consensus 27 ~~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~ 106 (400)
..+++.+||+||||+|||++|||+|||+||+++|++. ||++|+||+| +|++++|.|++|||| +++|+++|+|+++.+
T Consensus 22 ~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~-gGg~v~vP~G-~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d 98 (394)
T PLN02155 22 SSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSA-SSATVVVPTG-TFLLKVITFGGPCKS-KITFQVAGTVVAPED 98 (394)
T ss_pred ccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccC-CCeEEEECCC-cEEEEEEEEcccCCC-CceEEEeeEEECccc
Confidence 3456899999999999999999999999997789876 7899999999 999999999999999 999999999998887
Q ss_pred -CCccCCCccccEEEeeeeceEEecCeeEeCCCccccccCC-----CCCCceEEEeeeCcEEEEceEEeCCCCceEEEEe
Q 041224 107 -SAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQ-----NQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYG 180 (400)
Q Consensus 107 -~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~-----~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~ 180 (400)
..|.. ...|+.+.+++|+.|+| |+|||+|+.||.... ..+|++++|.+|++++|++++++|||+|++++.+
T Consensus 99 ~~~~~~--~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~ 175 (394)
T PLN02155 99 YRTFGN--SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNG 175 (394)
T ss_pred cccccc--cceeEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEEC
Confidence 66742 24689999999999999 999999999997421 2467899999999999999999999999999999
Q ss_pred ecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCCCC
Q 041224 181 CNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSI 260 (400)
Q Consensus 181 ~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~ 260 (400)
|++++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||.|..+||++|||+|+....+.
T Consensus 176 ~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~ 255 (394)
T PLN02155 176 CTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDG 255 (394)
T ss_pred eeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCc
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999987655789
Q ss_pred EEEEEEEeeEEeCCcceEEEEeecC-CCeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEE
Q 041224 261 VEDVHVRDCTFKGTKNGARIKTWQG-GSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQG 339 (400)
Q Consensus 261 i~ni~v~N~~~~~~~~gi~i~~~~~-~~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~ 339 (400)
++||+|+||++.++.+|+|||+|.+ ++|.|+||+|+||+|+++++||.|++.|+.....|+...+.+.|+||+|+||++
T Consensus 256 V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~g 335 (394)
T PLN02155 256 VENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQG 335 (394)
T ss_pred EEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEE
Confidence 9999999999999999999999965 679999999999999999999999999976544465556678999999999999
Q ss_pred ecCCcceEEEEecCCCCeecEEEEeEEEEecCCCCCcceeeecceecccceeecCCCCCC
Q 041224 340 TSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCLL 399 (400)
Q Consensus 340 ~~~~~~~i~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 399 (400)
+.....++.+.|.+..||+||+|+||+++.++ +.+..+.|+|++|...+ +++|++|+-
T Consensus 336 t~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~-~~~~~~~C~n~~G~~~~-~~~p~~c~~ 393 (394)
T PLN02155 336 TSATQEAMKLVCSKSSPCTGITLQDIKLTYNK-GTPATSFCFNAVGKSLG-VIQPTSCLN 393 (394)
T ss_pred EecCCceEEEEeCCCCCEEEEEEEeeEEEecC-CCccCcEEeccEeEEcc-cCCcccccC
Confidence 98877789999999999999999999999987 66678999999999999 999999974
No 3
>PLN03010 polygalacturonase
Probab=100.00 E-value=1e-78 Score=594.66 Aligned_cols=361 Identities=52% Similarity=0.947 Sum_probs=335.6
Q ss_pred CCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCC-C
Q 041224 29 YASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS-S 107 (400)
Q Consensus 29 ~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~-~ 107 (400)
+++.+||+||||+|||++|||+|||+||+++|+..+++++|+||+|++|++++|.|++||++.+++|+++|+|+++.+ .
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 568999999999999999999999999977786431237999999977999999999888744899999999999999 9
Q ss_pred CccCCCccccEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEe
Q 041224 108 AWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSIS 187 (400)
Q Consensus 108 ~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~ 187 (400)
+|+......|+.+.+++|++|+|.|+|||+|+.||. ++.|.+|+|++|++++++|||+|++++.+|++++|+
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~--------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~ 194 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE--------ALHISKCDNLTINGITSIDSPKNHISIKTCNYVAIS 194 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc--------eEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEE
Confidence 997544567999999999999999999999999996 699999999999999999999999999999999999
Q ss_pred ceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCCCCEEEEEEE
Q 041224 188 NLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVR 267 (400)
Q Consensus 188 ~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~v~ 267 (400)
+++|.++..++|+||||+.+|+||+|+||+|+++||||++|+++.|+.|+++.|..+||++|||+|..+....|+||+|+
T Consensus 195 ~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~ 274 (409)
T PLN03010 195 KINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVT 274 (409)
T ss_pred EEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEE
Confidence 99999988889999999999999999999999999999999999999999999999999999999887667789999999
Q ss_pred eeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEEecCCcceE
Q 041224 268 DCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAV 347 (400)
Q Consensus 268 N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~i 347 (400)
||++.++.+|+|||+|.++.|.|+||+|+||+|+++++||.|++.|+....+|..+.+.+.|+||+|+||+++.....++
T Consensus 275 n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i 354 (409)
T PLN03010 275 HCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAI 354 (409)
T ss_pred eeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccE
Confidence 99999999999999999999999999999999999999999999998876667777889999999999999998877899
Q ss_pred EEEecCCCCeecEEEEeEEEEecCCCCCcceeeecceecccceeecCCCCCC
Q 041224 348 QLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCLL 399 (400)
Q Consensus 348 ~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 399 (400)
.+.|++..||+||+|+||+++.++ +.++...|.|+++...+ +.+||+||.
T Consensus 355 ~l~Cs~~~pC~ni~~~~v~l~~~~-g~~~~~~C~nv~g~~~~-~~~~~~C~~ 404 (409)
T PLN03010 355 TLKCSAITHCKDVVMDDIDVTMEN-GEKPKVECQNVEGESSD-TDLMRDCFK 404 (409)
T ss_pred EEEeCCCCCEeceEEEEEEEEecC-CCccceEeeCccccccC-CCCCCcccc
Confidence 999999999999999999999887 56678999999999999 999999984
No 4
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.1e-78 Score=597.48 Aligned_cols=367 Identities=54% Similarity=0.989 Sum_probs=333.4
Q ss_pred CCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCC
Q 041224 29 YASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSA 108 (400)
Q Consensus 29 ~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~ 108 (400)
.++.+||+||||+|||++|||+|||+||++||++. ++++|+||+|++|++++|.|+++||++.+++.++|+|.++...+
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~-ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~~~ 98 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGT-GDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGN 98 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhcc-CCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcccc
Confidence 34789999999999999999999999998889866 78999999997799999999999887347888899999865556
Q ss_pred ccCCCccccEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEec
Q 041224 109 WDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISN 188 (400)
Q Consensus 109 ~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~ 188 (400)
|.+. ...||.+.++++++|+|.|+|||+|+.||... ..||+++.|.+|+|++|++++++|||+|++++..|++++|++
T Consensus 99 w~~~-~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~-~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~ 176 (456)
T PLN03003 99 WKGD-KDQWILFTDIEGLVIEGDGEINGQGSSWWEHK-GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISS 176 (456)
T ss_pred ccCC-CcceEEEEcccceEEeccceEeCCchhhhhcc-cCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEE
Confidence 7542 35699999999999999999999999999753 468999999999999999999999999999999999999999
Q ss_pred eEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCCCCEEEEEEEe
Q 041224 189 LKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRD 268 (400)
Q Consensus 189 ~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~v~N 268 (400)
++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+||++|||+|..+..+.|+||+|+|
T Consensus 177 l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n 256 (456)
T PLN03003 177 LRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQN 256 (456)
T ss_pred EEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEe
Confidence 99999988899999999999999999999999999999999999999999999999999999998876668899999999
Q ss_pred eEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecCCccEEEEeeecCCCC--CCCCCCcceeEEeEEEEeEEEecCCcce
Q 041224 269 CTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNG--DCKNQTSAVKVSDVSYIGFQGTSSTEEA 346 (400)
Q Consensus 269 ~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~i~nItf~nI~~~~~~~~~ 346 (400)
|++.++.+|+|||+|.+++|.|+||+|+||+|+++++||.|+++|+.... .|....+.+.|+||+|+||+++.....+
T Consensus 257 ~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~a 336 (456)
T PLN03003 257 CNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYG 336 (456)
T ss_pred eEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccce
Confidence 99999999999999999999999999999999999999999999975322 2344556789999999999999887788
Q ss_pred EEEEecCCCCeecEEEEeEEEEecCC--CCCcceeeecceecccceeecCCCCCC
Q 041224 347 VQLSCSESVGCTDIKINNIDITHSDS--GKDTRASCINAHGELYGQLVPSVDCLL 399 (400)
Q Consensus 347 i~i~~~~~~~~~ni~~~nv~i~~~~~--~~~~~~~c~~~~~~~~~~~~~~~~~~~ 399 (400)
+.+.|++..||+||+|+||+++.+++ +....+.|.|++|...+ +.||++|+.
T Consensus 337 i~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~-~~~~~~C~~ 390 (456)
T PLN03003 337 VDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTI-AVPGLECLE 390 (456)
T ss_pred EEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCc-eECCCCccc
Confidence 99999999999999999999998742 23578999999999999 999999984
No 5
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=5.7e-78 Score=594.58 Aligned_cols=359 Identities=43% Similarity=0.818 Sum_probs=331.1
Q ss_pred CCCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCC
Q 041224 27 PSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS 106 (400)
Q Consensus 27 ~~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~ 106 (400)
.++++++||+||||+|||++|||+|||+||+++|++. |+++|+||+|++|++++|.|+++||+ +++|+++|+|+++.+
T Consensus 62 ~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~-Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s~d 139 (431)
T PLN02218 62 LRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSN-GAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSASQK 139 (431)
T ss_pred cCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcC-CCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeCCC
Confidence 3457899999999999999999999999998789876 78899999997799999999999999 999999999999999
Q ss_pred -CCccCCCccccEEEeeeeceEEecC--eeEeCCCccccccCC--------CCCCceEEEeeeCcEEEEceEEeCCCCce
Q 041224 107 -SAWDGHDKKKWLLFSNVNGLTVNGN--GKIDGKGASWWSNKQ--------NQRPTALSFGSCNNLVFRGLTHVDSPGNH 175 (400)
Q Consensus 107 -~~~~~~~~~~~i~~~~~~nv~I~G~--G~idg~g~~~~~~~~--------~~rp~~i~~~~~~nv~i~~v~i~ns~~~~ 175 (400)
.+|+. ...||.+.+++|++|+|. |+|||+|+.||...+ ..||+++.|.+|+|++|++++++|||+|+
T Consensus 140 ~~~y~~--~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~ 217 (431)
T PLN02218 140 RSDYKD--ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQ 217 (431)
T ss_pred hhhccc--cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEE
Confidence 88863 357999999999999997 999999999997532 35899999999999999999999999999
Q ss_pred EEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCC
Q 041224 176 ISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGAN 255 (400)
Q Consensus 176 i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 255 (400)
+++.+|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+||++|||+|..
T Consensus 218 i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~ 297 (431)
T PLN02218 218 ISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDD 297 (431)
T ss_pred EEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCC
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEE
Q 041224 256 GGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYI 335 (400)
Q Consensus 256 ~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~ 335 (400)
...+.|+||+|+||++.++.+|+|||+|++++|.|+||+|+||+|+++++||.|++.|+.... |+.+++.+.|+||+|+
T Consensus 298 ~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~-~~~~~s~v~I~nI~~~ 376 (431)
T PLN02218 298 NSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSK-CTSQQSAVQVKNVVYR 376 (431)
T ss_pred CCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCC-CCCCCCCeEEEEEEEE
Confidence 667899999999999999999999999999999999999999999999999999999987543 6666778899999999
Q ss_pred eEEEecCCcceEEEEecCCCCeecEEEEeEEEEecCCCCCcceeeecceecccceeecCCCCC
Q 041224 336 GFQGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCL 398 (400)
Q Consensus 336 nI~~~~~~~~~i~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 398 (400)
||+++.....++.+.|.++.||+||+|+||+++.. ...|+||++...| +++| .|.
T Consensus 377 NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~-~~~p-~c~ 431 (431)
T PLN02218 377 NISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKG-AVSP-QCN 431 (431)
T ss_pred eEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcc-cCCC-CCC
Confidence 99999876678999999999999999999999843 3689999999999 7665 774
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=9.3e-76 Score=575.22 Aligned_cols=362 Identities=42% Similarity=0.744 Sum_probs=326.2
Q ss_pred CCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCC-
Q 041224 28 SYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS- 106 (400)
Q Consensus 28 ~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~- 106 (400)
+.+..+||+||||+|||.+|||+|||+||+++|++. ||++|+||+| +|++++|.|+++|++ ...|.+ +|+++.+
T Consensus 32 ~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~-Ggg~V~vP~G-~yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~ 106 (404)
T PLN02188 32 SSTFLFDVRSFGARANGHTDDSKAFMAAWKAACAST-GAVTLLIPPG-TYYIGPVQFHGPCTN-VSSLTF--TLKAATDL 106 (404)
T ss_pred CCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccC-CCeEEEECCC-eEEEEeEEeCCCcCc-ceeEEE--EEEcCCCH
Confidence 345789999999999999999999999998789876 7889999999 999999999988865 444444 8999999
Q ss_pred CCccCCCccccEEEeeeeceEEecCeeEeCCCccccccC-------CCCCCceEEEeeeCcEEEEceEEeCCCCceEEEE
Q 041224 107 SAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNK-------QNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVY 179 (400)
Q Consensus 107 ~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~-------~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~ 179 (400)
++|+. ...|+.+..++|++|+|.|+|||+|+.||+.. +..||+++.|.+|+|++|++++++|||+|++++.
T Consensus 107 ~~y~~--~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~ 184 (404)
T PLN02188 107 SRYGS--GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALV 184 (404)
T ss_pred HHCCC--ccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEE
Confidence 88873 24688888899999999999999999999632 2468999999999999999999999999999999
Q ss_pred eecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCCC
Q 041224 180 GCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTS 259 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~ 259 (400)
.|++++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||.|..+||++|||+|+++..+
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~ 264 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEG 264 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999998877778
Q ss_pred CEEEEEEEeeEEeCCcceEEEEeecC--CCeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCC-CCCcceeEEeEEEEe
Q 041224 260 IVEDVHVRDCTFKGTKNGARIKTWQG--GSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCK-NQTSAVKVSDVSYIG 336 (400)
Q Consensus 260 ~i~ni~v~N~~~~~~~~gi~i~~~~~--~~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~i~nItf~n 336 (400)
.++||+|+||++.++.+|+|||+|.+ +.|.|+||+|+||+|+++++||.|++.|+.... |. ..+..+.|+||+|+|
T Consensus 265 ~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~-~~~~~~s~v~I~nIt~~n 343 (404)
T PLN02188 265 DVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYS-CESKYPSGVTLSDIYFKN 343 (404)
T ss_pred cEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCC-CCcCCCCCcEEEeEEEEE
Confidence 99999999999999999999999976 358999999999999999999999999976433 32 234568899999999
Q ss_pred EEEecCCcceEEEEecCCCCeecEEEEeEEEEecCCCCCcceeeecceecccceeecCCCCC
Q 041224 337 FQGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCL 398 (400)
Q Consensus 337 I~~~~~~~~~i~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 398 (400)
|+++.....++.+.|.++.||+||+|+||+++.++++....+.|+|+++.+.| .++||+|.
T Consensus 344 I~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g-~~~p~~C~ 404 (404)
T PLN02188 344 IRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIG-TQIPPPCP 404 (404)
T ss_pred EEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcc-cCcCCCCC
Confidence 99998766789999999999999999999999886234567999999999999 89999994
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.1e-58 Score=448.11 Aligned_cols=316 Identities=38% Similarity=0.735 Sum_probs=274.6
Q ss_pred hcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCC-CCccCCCccccEEEeeeeceEEecCeeEeCCC
Q 041224 60 CGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS-SAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKG 138 (400)
Q Consensus 60 ~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~-~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g 138 (400)
|++. ++++|+||+| +|+++++.|++++++ ++++.++|++.++.. ..+. + .+||.+.+++|++|+|.|+|||+|
T Consensus 1 C~~~-~~~~v~vP~g-~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~--~-~~~i~~~~~~ni~i~G~G~IDG~G 74 (326)
T PF00295_consen 1 CSSI-GGGTVVVPAG-TYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGP--N-SALIYAENAENITITGKGTIDGNG 74 (326)
T ss_dssp HSEE-EEESEEESTS-TEEEEETSEETECET-TCEEEEESEEEEG-EESTSE----SEEEEEESEEEEECTTSSEEE--G
T ss_pred CcCC-cCCEEEECCC-CeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCC--c-cEEEEEEceEEEEecCCceEcCch
Confidence 4443 5779999999 999999999644446 899999999988755 4444 2 689999999999999999999999
Q ss_pred ccccccCC------CCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEE
Q 041224 139 ASWWSNKQ------NQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQ 212 (400)
Q Consensus 139 ~~~~~~~~------~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~ 212 (400)
+.||+... ..||+++.|.+|++++|++++++|+|+|++++..|+|++|++++|.++...+|+||||+.+|+||+
T Consensus 75 ~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~ 154 (326)
T PF00295_consen 75 QAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVT 154 (326)
T ss_dssp GGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEE
T ss_pred hhhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEE
Confidence 99998553 379999999999999999999999999999999999999999999998777999999999999999
Q ss_pred EEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEe
Q 041224 213 IRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARR 292 (400)
Q Consensus 213 I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~n 292 (400)
|+||+|+++||||++|++..||+|+||+|..+||++|||++..+....++||+|+||++.++.+|++||++++++|.|+|
T Consensus 155 I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~n 234 (326)
T PF00295_consen 155 IENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSN 234 (326)
T ss_dssp EESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEE
T ss_pred EEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEec
Confidence 99999999999999999888999999999999999999997543335799999999999999999999999989999999
Q ss_pred EEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEEecCCcceEEEEecCCCCeecEEEEeEEEEecCC
Q 041224 293 ISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDS 372 (400)
Q Consensus 293 I~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~i~i~~~~~~~~~ni~~~nv~i~~~~~ 372 (400)
|+|+||+|+++++||.|++.|.. ..++..++..+.|+||+|+||+++.....++.+.|.+..||+||+|+||+++. +
T Consensus 235 I~f~ni~~~~v~~pi~i~~~y~~-~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g- 311 (326)
T PF00295_consen 235 ITFENITMENVKYPIFIDQDYRD-GGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G- 311 (326)
T ss_dssp EEEEEEEEEEESEEEEEEEEECT-TEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S-
T ss_pred eEEEEEEecCCceEEEEEecccc-ccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C-
Confidence 99999999999999999999977 33354455677899999999999998767899999999999999999999997 2
Q ss_pred CCCcceeeecceec
Q 041224 373 GKDTRASCINAHGE 386 (400)
Q Consensus 373 ~~~~~~~c~~~~~~ 386 (400)
...+.|+|++..
T Consensus 312 --~~~~~c~nv~~~ 323 (326)
T PF00295_consen 312 --KKPAQCKNVPSG 323 (326)
T ss_dssp --BSESEEBSCCTT
T ss_pred --CcCeEEECCCCC
Confidence 456899998753
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1e-42 Score=347.10 Aligned_cols=271 Identities=33% Similarity=0.593 Sum_probs=234.1
Q ss_pred CCCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEe-E-EEEcc
Q 041224 27 PSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQ-G-NIVAP 104 (400)
Q Consensus 27 ~~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~-g-~i~~~ 104 (400)
.+....++|++|||+|||.+++++|||+|| ++|++. +|++|+||+| +|+.++|+| || +++|+++ | +|+.+
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI-~~ca~a-~Gg~V~lPaG-tylsg~l~L----KS-~~~L~l~egatl~~~ 148 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAI-DACASA-GGGTVLLPAG-TYLSGPLFL----KS-NVTLHLAEGATLLAS 148 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHH-Hhhhhh-cCceEEECCc-eeEeeeEEE----ec-ccEEEecCCceeeCC
Confidence 445678999999999999999999999999 578765 7999999999 999999999 79 9999995 5 89988
Q ss_pred CC-CCccC------CCc-----------------------cccEEEeeeeceE-EecCeeEeCCC----ccccccCC---
Q 041224 105 HS-SAWDG------HDK-----------------------KKWLLFSNVNGLT-VNGNGKIDGKG----ASWWSNKQ--- 146 (400)
Q Consensus 105 ~~-~~~~~------~~~-----------------------~~~i~~~~~~nv~-I~G~G~idg~g----~~~~~~~~--- 146 (400)
.+ .+|+. ... +.++.....+|.. |.|.|+++|++ ..||....
T Consensus 149 ~~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~ 228 (542)
T COG5434 149 SNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVE 228 (542)
T ss_pred CChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchh
Confidence 88 88872 000 1222223335555 88999999964 22664221
Q ss_pred ----C--CCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEec
Q 041224 147 ----N--QRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIAT 220 (400)
Q Consensus 147 ----~--~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~ 220 (400)
. .||..+.+..|+|+++++++|.+++.|.+++..|+|++++|++|.+.... |+|||++.+|+||+|++|+|.+
T Consensus 229 ~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdt 307 (542)
T COG5434 229 TRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDT 307 (542)
T ss_pred hcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEec
Confidence 2 59999999999999999999999999999999999999999999998754 9999999999999999999999
Q ss_pred CCceEEEcCC-----------ceeEEEEeeEEcCCce-EEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecCCCe
Q 041224 221 GDDCVAIGTD-----------TSNIAVTGVICGPGHG-ISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSG 288 (400)
Q Consensus 221 ~dD~i~i~s~-----------~~ni~i~n~~~~~~~g-i~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g 288 (400)
+||||++|++ ++||.|+||++..+|| +.+||| ..+.++||+++||.|.++.+|+|||+..+++|
T Consensus 308 gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG 383 (542)
T COG5434 308 GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDGRGG 383 (542)
T ss_pred CCceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecccce
Confidence 9999999985 6899999999999996 889998 58999999999999999999999999999999
Q ss_pred eEEeEEEEeEEEecCCccEEEE
Q 041224 289 HARRISFERIRLESSDNPIIID 310 (400)
Q Consensus 289 ~i~nI~f~ni~~~~~~~~i~i~ 310 (400)
.++||+|+++++.++..+..|.
T Consensus 384 ~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 384 GVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eEEEEEEecccccCcccceeee
Confidence 9999999999999986555444
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.95 E-value=8.4e-26 Score=218.96 Aligned_cols=248 Identities=18% Similarity=0.243 Sum_probs=193.0
Q ss_pred CCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEe-EEEEccCC
Q 041224 28 SYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQ-GNIVAPHS 106 (400)
Q Consensus 28 ~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~-g~i~~~~~ 106 (400)
++.+.+++++|||++||++|+|+|||+||+ +|+. ++++|.+|+| +|+.++|.| ++ +++|+++ |.....
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAId-aAa~--gG~tV~Lp~G-~Y~~G~L~L----~s-pltL~G~~gAt~~v-- 101 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAID-EAAR--AQTPLALPPG-VYRTGPLRL----PS-GAQLIGVRGATRLV-- 101 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHH-Hhhc--CCCEEEECCC-ceecccEEE----CC-CcEEEecCCcEEEE--
Confidence 566789999999999999999999999995 4554 3678999999 999999999 56 8999987 332100
Q ss_pred CCccCCCccccEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeec----
Q 041224 107 SAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCN---- 182 (400)
Q Consensus 107 ~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~---- 182 (400)
+. ....++...++++|+|+|. +|+++|..|. .++.+|.+..|++++|++++|.++..|++.+..|+
T Consensus 102 --Id--G~~~lIiai~A~nVTIsGL-tIdGsG~dl~-----~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~ 171 (455)
T TIGR03808 102 --FT--GGPSLLSSEGADGIGLSGL-TLDGGGIPLP-----QRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDIS 171 (455)
T ss_pred --Ec--CCceEEEEecCCCeEEEee-EEEeCCCccc-----CCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEe
Confidence 11 1145676778899999996 9999997664 47889999999999999999999999999999999
Q ss_pred ------------------ceEEeceEEECCCC--------------------------------CCCCCeeeecCcccEE
Q 041224 183 ------------------DVSISNLKIIAPES--------------------------------SPNTDGIDITHSSNVQ 212 (400)
Q Consensus 183 ------------------nv~i~~~~I~~~~~--------------------------------~~n~DGi~i~~s~nV~ 212 (400)
+..|++.+|....+ ....+||+++.+.+++
T Consensus 172 ~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~ 251 (455)
T TIGR03808 172 GNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVI 251 (455)
T ss_pred cceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeE
Confidence 88888877775433 2356788998889999
Q ss_pred EEeeEEecCC-ceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecCCC--ee
Q 041224 213 IRDCTIATGD-DCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGS--GH 289 (400)
Q Consensus 213 I~n~~i~~~d-D~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~--g~ 289 (400)
|++.+|+..+ |+|.+.+ ++|++|+++.|....=+.+-++ -..+.-.|+|+.+.+...|+.+....+++ ..
T Consensus 252 V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~ 324 (455)
T TIGR03808 252 VRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAV 324 (455)
T ss_pred EECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceEEEEeecCCceEEE
Confidence 9999999888 8888887 7888888888874332233322 11122567888888888899888765433 67
Q ss_pred EEeEEEEeEEEecC
Q 041224 290 ARRISFERIRLESS 303 (400)
Q Consensus 290 i~nI~f~ni~~~~~ 303 (400)
+..-.++|++-+..
T Consensus 325 ~~gn~irn~~~~~p 338 (455)
T TIGR03808 325 VQGNIIRNLIPKRP 338 (455)
T ss_pred EecceeeccccCCC
Confidence 78888888887753
No 10
>PLN02793 Probable polygalacturonase
Probab=99.87 E-value=1.1e-19 Score=181.22 Aligned_cols=219 Identities=20% Similarity=0.331 Sum_probs=172.9
Q ss_pred CeEEEEeEEEEccCCCCccC------CC---ccc-cEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcE
Q 041224 92 SINVQIQGNIVAPHSSAWDG------HD---KKK-WLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNL 161 (400)
Q Consensus 92 ~v~l~~~g~i~~~~~~~~~~------~~---~~~-~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv 161 (400)
++++...|+|.+....-|.. .+ .+| ++.+.+++|++|+|.-+.+. +.| .+.+.+|+|+
T Consensus 144 ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---p~~---------~i~~~~~~nv 211 (443)
T PLN02793 144 HLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---QQM---------HIAFTNCRRV 211 (443)
T ss_pred eEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC---CCe---------EEEEEccCcE
Confidence 78888889987655433421 01 134 78999999999999555543 344 3889999999
Q ss_pred EEEceEEeCCC----CceEEEEeecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcC-------
Q 041224 162 VFRGLTHVDSP----GNHISVYGCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGT------- 229 (400)
Q Consensus 162 ~i~~v~i~ns~----~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s------- 229 (400)
+|++++|.++. ..+|++..|+||+|+|++|.+. .|+|.+. +|+||+|+||....++ +|+++|
T Consensus 212 ~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~g-----DDcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg~~~~~ 285 (443)
T PLN02793 212 TISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTG-----DDCISIVGNSSRIKIRNIACGPGH-GISIGSLGKSNSW 285 (443)
T ss_pred EEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCC-----CCeEEecCCcCCEEEEEeEEeCCc-cEEEecccCcCCC
Confidence 99999998743 3789999999999999999995 4788885 6899999999998775 699987
Q ss_pred -CceeEEEEeeEEcCC-ceEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecCC----------CeeEEeEEEEe
Q 041224 230 -DTSNIAVTGVICGPG-HGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGG----------SGHARRISFER 297 (400)
Q Consensus 230 -~~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~----------~g~i~nI~f~n 297 (400)
+.+||+|+||++.++ .|++|++... ..+.++||+|+|++|.+..++|.|..++.. ...|+||+|+|
T Consensus 286 ~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~n 363 (443)
T PLN02793 286 SEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVH 363 (443)
T ss_pred CcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEE
Confidence 279999999999876 5999998632 357999999999999999999999875422 14699999999
Q ss_pred EEEecC-CccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEEecC
Q 041224 298 IRLESS-DNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSS 342 (400)
Q Consensus 298 i~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~~ 342 (400)
|+.+.. +.++.+. +. +..+++||+|+||+++..
T Consensus 364 I~Gt~~~~~ai~l~---cs---------~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 364 IKGTSATEEAIKFA---CS---------DSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred EEEEEcccccEEEE---eC---------CCCCEeeEEEEeeEEEec
Confidence 999875 3455554 22 233599999999998865
No 11
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.87 E-value=2.1e-19 Score=177.10 Aligned_cols=221 Identities=20% Similarity=0.276 Sum_probs=171.8
Q ss_pred CeEEEEeEEEEccCCCCccC--------CCccc-cEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEE
Q 041224 92 SINVQIQGNIVAPHSSAWDG--------HDKKK-WLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLV 162 (400)
Q Consensus 92 ~v~l~~~g~i~~~~~~~~~~--------~~~~~-~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~ 162 (400)
+++|...|+|.+.....|.. ...+| ++.+.+++|+.|+|.-+. ..++| .+++.+|+|++
T Consensus 123 ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~---nSp~w---------~i~~~~~~~v~ 190 (404)
T PLN02188 123 GLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSV---NSKFF---------HIALVECRNFK 190 (404)
T ss_pred eEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEE---cCCCe---------EEEEEccccEE
Confidence 78888889987655434431 01234 789999999999994333 34556 49999999999
Q ss_pred EEceEEeCCC----CceEEEEeecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcC--------
Q 041224 163 FRGLTHVDSP----GNHISVYGCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGT-------- 229 (400)
Q Consensus 163 i~~v~i~ns~----~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s-------- 229 (400)
|++++|.++. ..++++..|++|.|+|+.|.+. .|+|.+. +++||+|+||....+. +|++++
T Consensus 191 i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~G-----DDcIaiksg~~nI~I~n~~c~~gh-GisiGSlG~~~~~~ 264 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTG-----DDCISIGQGNSQVTITRIRCGPGH-GISVGSLGRYPNEG 264 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCC-----CcEEEEccCCccEEEEEEEEcCCC-cEEeCCCCCCCcCC
Confidence 9999998642 3689999999999999999995 4788885 5789999999997764 799877
Q ss_pred CceeEEEEeeEEcCC-ceEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecC----------CCeeEEeEEEEeE
Q 041224 230 DTSNIAVTGVICGPG-HGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQG----------GSGHARRISFERI 298 (400)
Q Consensus 230 ~~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~----------~~g~i~nI~f~ni 298 (400)
+.+||+|+||++.++ +|++|++.......+.++||+|+|++|.+...++.|...+. ....|+||+|+||
T Consensus 265 ~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI 344 (404)
T PLN02188 265 DVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNI 344 (404)
T ss_pred cEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEE
Confidence 379999999999986 59999986322235789999999999999999999886321 1267999999999
Q ss_pred EEecC-CccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEEecC
Q 041224 299 RLESS-DNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSS 342 (400)
Q Consensus 299 ~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~~ 342 (400)
+.+.. +.++.+. +. +..+++||+|+||+++..
T Consensus 345 ~gt~~~~~a~~l~---cs---------~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 345 RGTSSSQVAVLLK---CS---------RGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEecCceEEEEE---EC---------CCCCEeeEEEEeeEEEec
Confidence 99875 3344443 22 234599999999999755
No 12
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.86 E-value=1.9e-20 Score=171.77 Aligned_cols=207 Identities=23% Similarity=0.402 Sum_probs=116.8
Q ss_pred eEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEee-eeeecCCCCCCCeEEEEeE---E-EEccCC
Q 041224 32 SVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLN-PVSFQGPCKSSSINVQIQG---N-IVAPHS 106 (400)
Q Consensus 32 ~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~-~l~l~~~~ks~~v~l~~~g---~-i~~~~~ 106 (400)
.+||+||||+|||++|||+|||+||+++.+. ++++||||+| +|++. +|.+ ++ +++|+++| + +.....
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~~--~g~~v~~P~G-~Y~i~~~l~~----~s-~v~l~G~g~~~~~~~~~~~ 72 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAAA--GGGVVYFPPG-TYRISGTLII----PS-NVTLRGAGGNSTILFLSGS 72 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCST--TSEEEEE-SE-EEEESS-EEE-----T-TEEEEESSTTTEEEEECTT
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcccC--CCeEEEEcCc-EEEEeCCeEc----CC-CeEEEccCCCeeEEEecCc
Confidence 4799999999999999999999999444443 6899999999 99996 5999 57 99999974 2 332322
Q ss_pred -CCccCCCccccEEEe--------eeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCceEE
Q 041224 107 -SAWDGHDKKKWLLFS--------NVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHIS 177 (400)
Q Consensus 107 -~~~~~~~~~~~i~~~--------~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~ 177 (400)
..+... .....+. ..+|++|.| .....- .....+.+..+++++|+++++.++...++.
T Consensus 73 ~~~~~~~--~~~~~~~~~~~~~~~~i~nl~i~~------~~~~~~-----~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~ 139 (225)
T PF12708_consen 73 GDSFSVV--PGIGVFDSGNSNIGIQIRNLTIDG------NGIDPN-----NNNNGIRFNSSQNVSISNVRIENSGGDGIY 139 (225)
T ss_dssp TSTSCCE--EEEEECCSCSCCEEEEEEEEEEEE------TCGCE------SCEEEEEETTEEEEEEEEEEEES-SS-SEE
T ss_pred ccccccc--cceeeeecCCCCceEEEEeeEEEc------ccccCC-----CCceEEEEEeCCeEEEEeEEEEccCccEEE
Confidence 322200 0011111 134444444 332111 013467888888888899888887777777
Q ss_pred EEeecceEEeceEEECCCCCCCCCeeeecC-cccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcC--CceEEEeccCC
Q 041224 178 VYGCNDVSISNLKIIAPESSPNTDGIDITH-SSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGP--GHGISIGSLGA 254 (400)
Q Consensus 178 ~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~-s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~--~~gi~igs~g~ 254 (400)
+..+....+.+..... ++.+.. +.++.+.+|.+..+++++.. +.+++.++||.+.. ..|+.+...
T Consensus 140 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~i~n~~~~~~~~~gi~i~~~-- 207 (225)
T PF12708_consen 140 FNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIIL--GNNNITISNNTFEGNCGNGINIEGG-- 207 (225)
T ss_dssp EECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEEC--EEEEEEEECEEEESSSSESEEEEEC--
T ss_pred EEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEe--ecceEEEEeEEECCccceeEEEECC--
Confidence 7644444433322221 233322 34555666666666666322 23566666666654 235555332
Q ss_pred CCCCCCEEEEEEEeeEEeCCcceE
Q 041224 255 NGGTSIVEDVHVRDCTFKGTKNGA 278 (400)
Q Consensus 255 ~~~~~~i~ni~v~N~~~~~~~~gi 278 (400)
.+++++|+++.+...|+
T Consensus 208 -------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 -------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp -------SEEEEEEEEEESSSEEE
T ss_pred -------eEEEEEeEEEECCccCc
Confidence 22555555555554444
No 13
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.86 E-value=5e-19 Score=175.19 Aligned_cols=207 Identities=15% Similarity=0.239 Sum_probs=165.4
Q ss_pred CceEEEeeeCcEEEEceEEeCCC---Cc--------eEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEE
Q 041224 150 PTALSFGSCNNLVFRGLTHVDSP---GN--------HISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTI 218 (400)
Q Consensus 150 p~~i~~~~~~nv~i~~v~i~ns~---~~--------~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i 218 (400)
..+|.+.++++++|.|--..+.. .| .+.+..|+|+.|+++++.+++.. .+++..|+||+|++.+|
T Consensus 104 ~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w----~i~i~~c~nV~i~~l~I 179 (456)
T PLN03003 104 DQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMA----HIHISECNYVTISSLRI 179 (456)
T ss_pred cceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcE----EEEEeccccEEEEEEEE
Confidence 45799999999999984333321 12 58999999999999999987532 38889999999999999
Q ss_pred ecC-----CceEEEcCCceeEEEEeeEEcCCc-eEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecCC--CeeE
Q 041224 219 ATG-----DDCVAIGTDTSNIAVTGVICGPGH-GISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGG--SGHA 290 (400)
Q Consensus 219 ~~~-----dD~i~i~s~~~ni~i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~--~g~i 290 (400)
.+. -|+|.+.+ ++||+|+||.+..++ .|+|++ +.+||+|+||++.. .+|+.|.+.... .+.|
T Consensus 180 ~ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiks--------gs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V 249 (456)
T PLN03003 180 NAPESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINS--------GTSNIHISGIDCGP-GHGISIGSLGKDGETATV 249 (456)
T ss_pred eCCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCC--------CCccEEEEeeEEEC-CCCeEEeeccCCCCcceE
Confidence 873 58999987 899999999999886 699976 25899999999976 489999987432 3679
Q ss_pred EeEEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEEecCCcceEEEEecC--------------CCC
Q 041224 291 RRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSE--------------SVG 356 (400)
Q Consensus 291 ~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~i~i~~~~--------------~~~ 356 (400)
+||+++|+++.+..++++|+++.+ ..+.++||+|+||++..... |+.++... ...
T Consensus 250 ~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~-pI~Idq~Y~~~~~~~~~~~~~s~v~ 318 (456)
T PLN03003 250 ENVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVEN-PIIIDQFYNGGDSDNAKDRKSSAVE 318 (456)
T ss_pred EEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccc-eEEEEcccCCCCCCCcccCCCCCcE
Confidence 999999999999999999998732 23579999999999998764 77775211 125
Q ss_pred eecEEEEeEEEEecCCCCCcceeeec
Q 041224 357 CTDIKINNIDITHSDSGKDTRASCIN 382 (400)
Q Consensus 357 ~~ni~~~nv~i~~~~~~~~~~~~c~~ 382 (400)
++||+|+||+.+... .....+.|+.
T Consensus 319 IsnI~f~NI~GTs~~-~~ai~l~Cs~ 343 (456)
T PLN03003 319 VSKVVFSNFIGTSKS-EYGVDFRCSE 343 (456)
T ss_pred EEeEEEEeEEEEeCc-cceEEEEeCC
Confidence 899999999998766 4445566654
No 14
>PLN03010 polygalacturonase
Probab=99.86 E-value=8.2e-19 Score=172.58 Aligned_cols=231 Identities=16% Similarity=0.251 Sum_probs=174.3
Q ss_pred eceEEecCeeEeCCC-ccccccCCCCCCceEEEeeeCcEEEEceEEeCCC---Cc-eEEEEeecceEEeceEEECCCCCC
Q 041224 124 NGLTVNGNGKIDGKG-ASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSP---GN-HISVYGCNDVSISNLKIIAPESSP 198 (400)
Q Consensus 124 ~nv~I~G~G~idg~g-~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~---~~-~i~~~~~~nv~i~~~~I~~~~~~~ 198 (400)
.|+.+.=.|+|-+.. ...|... .....+.|.+++|+.|.+-=..+.. .| .+.+.+|+|++|+++++.+++..
T Consensus 105 ~~v~l~l~G~l~~~~d~~~w~~~--~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~- 181 (409)
T PLN03010 105 TSIKVQLDGIIVAPSNIVAWSNP--KSQMWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKN- 181 (409)
T ss_pred CcEEEEEccEEEccCChhhccCC--CCcceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCce-
Confidence 345555446665543 3345321 1234688999999999985444432 24 48899999999999999997532
Q ss_pred CCCeeeecCcccEEEEeeEEecC-----CceEEEcCCceeEEEEeeEEcCCc-eEEEeccCCCCCCCCEEEEEEEeeEEe
Q 041224 199 NTDGIDITHSSNVQIRDCTIATG-----DDCVAIGTDTSNIAVTGVICGPGH-GISIGSLGANGGTSIVEDVHVRDCTFK 272 (400)
Q Consensus 199 n~DGi~i~~s~nV~I~n~~i~~~-----dD~i~i~s~~~ni~i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~v~N~~~~ 272 (400)
-+++..|++|+|++.+|.+. -|+|.+.+ ++||+|+||++..++ .|+|++. ..++.|+++++.
T Consensus 182 ---~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~ 249 (409)
T PLN03010 182 ---HISIKTCNYVAISKINILAPETSPNTDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCG 249 (409)
T ss_pred ---EEEEeccccEEEEEEEEeCCCCCCCCCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeE
Confidence 38889999999999999873 58999987 899999999999886 6999873 246788888876
Q ss_pred CCcceEEEEeecCC--CeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEEecCCcceEEEE
Q 041224 273 GTKNGARIKTWQGG--SGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLS 350 (400)
Q Consensus 273 ~~~~gi~i~~~~~~--~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~i~i~ 350 (400)
. .+|+.|++.... ...|+||+|+|+++.+..++++|+++.+ ..+.++||+|+||++.... .|+.++
T Consensus 250 ~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~-~pI~I~ 317 (409)
T PLN03010 250 P-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG----------GQGYARNISFENITLINTK-NPIIID 317 (409)
T ss_pred C-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCC-ccEEEE
Confidence 5 489999986432 2569999999999999999999998743 2357999999999999875 467775
Q ss_pred ecC------------CCCeecEEEEeEEEEecCCCCCcceeeec
Q 041224 351 CSE------------SVGCTDIKINNIDITHSDSGKDTRASCIN 382 (400)
Q Consensus 351 ~~~------------~~~~~ni~~~nv~i~~~~~~~~~~~~c~~ 382 (400)
... ...++||+|+|++-+... .....+.|+.
T Consensus 318 q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~-~~~i~l~Cs~ 360 (409)
T PLN03010 318 QQYIDKGKLDATKDSAVAISNVKYVGFRGTTSN-ENAITLKCSA 360 (409)
T ss_pred eeccCCCCCCCCCCCceEEEeEEEEeeEEEeCC-CccEEEEeCC
Confidence 221 125799999999998776 5566677643
No 15
>PLN02218 polygalacturonase ADPG
Probab=99.86 E-value=3.7e-19 Score=176.58 Aligned_cols=206 Identities=21% Similarity=0.318 Sum_probs=163.9
Q ss_pred ceEEEeeeCcEEEEc---eEEeCCC-------------------CceEEEEeecceEEeceEEECCCCCCCCCeeeecCc
Q 041224 151 TALSFGSCNNLVFRG---LTHVDSP-------------------GNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHS 208 (400)
Q Consensus 151 ~~i~~~~~~nv~i~~---v~i~ns~-------------------~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s 208 (400)
..+.+.+++|++|.+ =+|.... -..+.+.+|+|++|+++++.+++.+ -+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w----~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQI----QISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCE----EEEEEce
Confidence 468899999999988 3443211 1247889999999999999987642 3888999
Q ss_pred ccEEEEeeEEec-----CCceEEEcCCceeEEEEeeEEcCCc-eEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEe
Q 041224 209 SNVQIRDCTIAT-----GDDCVAIGTDTSNIAVTGVICGPGH-GISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKT 282 (400)
Q Consensus 209 ~nV~I~n~~i~~-----~dD~i~i~s~~~ni~i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~ 282 (400)
+||+|+|.+|.+ .-|+|.+.+ ++||+|+||++..++ .|+|++ +.+||+|+||++.. .+|+.|.+
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIks--------gs~nI~I~n~~c~~-GHGisIGS 293 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIES--------GSQNVQINDITCGP-GHGISIGS 293 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecC--------CCceEEEEeEEEEC-CCCEEECc
Confidence 999999999987 358999987 899999999999886 699976 35899999999975 58999998
Q ss_pred ecCC--CeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEEecCCcceEEEEecC-------
Q 041224 283 WQGG--SGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSE------- 353 (400)
Q Consensus 283 ~~~~--~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~i~i~~~~------- 353 (400)
.... .+.|+||+++|+++.+..++++|+++.+ ..+.++||+|+||++..... |+.+....
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~~-pI~Idq~Y~~~~~~~ 362 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVKN-PIIIDQDYCDKSKCT 362 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEcccc-cEEEEeeccCCCCCC
Confidence 6432 3789999999999999999999998632 34579999999999998854 67665221
Q ss_pred ----CCCeecEEEEeEEEEecCCCCCcceeeec
Q 041224 354 ----SVGCTDIKINNIDITHSDSGKDTRASCIN 382 (400)
Q Consensus 354 ----~~~~~ni~~~nv~i~~~~~~~~~~~~c~~ 382 (400)
...++||+|+||+.+... .....+.|..
T Consensus 363 ~~~s~v~I~nI~~~NI~gtsa~-~~ai~l~cs~ 394 (431)
T PLN02218 363 SQQSAVQVKNVVYRNISGTSAS-DVAITFNCSK 394 (431)
T ss_pred CCCCCeEEEEEEEEeEEEEecC-CcEEEEEECC
Confidence 123899999999998765 4444555543
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.84 E-value=1.3e-18 Score=170.32 Aligned_cols=289 Identities=20% Similarity=0.271 Sum_probs=162.2
Q ss_pred CceEEecCCCEEEeee---eeecCCCCCCCe-EEEEe-EEEEccCCCCccCCCccccEEEeeeeceEEecCeeEeCCCcc
Q 041224 66 AAPLLVPAGKTFLLNP---VSFQGPCKSSSI-NVQIQ-GNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGAS 140 (400)
Q Consensus 66 g~~v~iP~G~~Y~~~~---l~l~~~~ks~~v-~l~~~-g~i~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~ 140 (400)
..+|||+|| +|.++. +.|. + ++ +++++ |.+.. +++.+....+|++|.|.|+|.|....
T Consensus 232 ~~~lYF~PG-Vy~ig~~~~l~L~----s-n~~~VYlApGAyVk-----------GAf~~~~~~~nv~i~G~GVLSGe~Yv 294 (582)
T PF03718_consen 232 KDTLYFKPG-VYWIGSDYHLRLP----S-NTKWVYLAPGAYVK-----------GAFEYTDTQQNVKITGRGVLSGEQYV 294 (582)
T ss_dssp SSEEEE-SE-EEEEBCTC-EEE-----T-T--EEEE-TTEEEE-----------S-EEE---SSEEEEESSSEEE-TTS-
T ss_pred cceEEeCCc-eEEeCCCccEEEC----C-CccEEEEcCCcEEE-----------EEEEEccCCceEEEEeeEEEcCccee
Confidence 459999999 999973 7883 5 64 88988 55431 34444457899999999999998776
Q ss_pred ccccCCC-------------CCCceEE---EeeeCcEEEEceEEeCCCCceEEEEeec----ceEEeceEEECCCCCCCC
Q 041224 141 WWSNKQN-------------QRPTALS---FGSCNNLVFRGLTHVDSPGNHISVYGCN----DVSISNLKIIAPESSPNT 200 (400)
Q Consensus 141 ~~~~~~~-------------~rp~~i~---~~~~~nv~i~~v~i~ns~~~~i~~~~~~----nv~i~~~~I~~~~~~~n~ 200 (400)
|-.+..+ ..-+++. ...++++.++|++|.++|.|.+.+...+ +..|+|.++... +..++
T Consensus 295 y~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGa-W~~qt 373 (582)
T PF03718_consen 295 YEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGA-WYFQT 373 (582)
T ss_dssp TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT-
T ss_pred EeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeee-EEecc
Confidence 6432211 1224565 4456699999999999999999999655 489999999974 34799
Q ss_pred CeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCc-e--EEEeccCCCCCCCCEEEEEEEeeEEeCCc--
Q 041224 201 DGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGH-G--ISIGSLGANGGTSIVEDVHVRDCTFKGTK-- 275 (400)
Q Consensus 201 DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~-g--i~igs~g~~~~~~~i~ni~v~N~~~~~~~-- 275 (400)
|||.+. ++-+|+||++++.||+|.+.. .++.|+||+++..+ | +.+|.. ...++||.|+|+.+..+.
T Consensus 374 DGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~ 444 (582)
T PF03718_consen 374 DGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWI 444 (582)
T ss_dssp ---B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---S
T ss_pred CCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeee
Confidence 999986 577889999999999998775 79999999998643 3 777653 567999999999999862
Q ss_pred -------ceEEEEeecC----------CCeeEEeEEEEeEEEecCC-ccEEEEeeecCCCCCCCCCCcceeEEeEEEEeE
Q 041224 276 -------NGARIKTWQG----------GSGHARRISFERIRLESSD-NPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGF 337 (400)
Q Consensus 276 -------~gi~i~~~~~----------~~g~i~nI~f~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI 337 (400)
.+|.-.+... ..-.|++++|+|+++|+.- ..+.|...-. ..+..|+|+.|+..
T Consensus 445 ~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plqn---------~~nl~ikN~~~~~w 515 (582)
T PF03718_consen 445 WHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQN---------YDNLVIKNVHFESW 515 (582)
T ss_dssp SGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SEE---------EEEEEEEEEEECEE
T ss_pred cccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecCC---------CcceEEEEeecccc
Confidence 3543332211 0136899999999999854 3555653210 12234555555533
Q ss_pred EEecCCcceEEEE---ec---CCCCeecEEEEeEEEEecCCCCCcceeeecceecccceeecCCC
Q 041224 338 QGTSSTEEAVQLS---CS---ESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVD 396 (400)
Q Consensus 338 ~~~~~~~~~i~i~---~~---~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 396 (400)
.+.........+. .. ......+|.|+|.+|..+. +.-+|-.....||+..+|.
T Consensus 516 ~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~~------it~~N~~~~~lG~~~~d~~ 574 (582)
T PF03718_consen 516 NGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGEK------ITGDNWRSNSLGRLNIDPE 574 (582)
T ss_dssp T-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTEE--------TTT-STTTTT-EEE-CC
T ss_pred cCcccccceeeccccccccccccccccceEEEeEEECCEE------ecccccccccccceecCcc
Confidence 3221111111111 11 1234789999999995433 2223333445555554443
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.84 E-value=1.9e-19 Score=174.48 Aligned_cols=218 Identities=22% Similarity=0.378 Sum_probs=166.2
Q ss_pred CeEEEEeEEEEccCCCCccCC--------CccccEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEE
Q 041224 92 SINVQIQGNIVAPHSSAWDGH--------DKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVF 163 (400)
Q Consensus 92 ~v~l~~~g~i~~~~~~~~~~~--------~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i 163 (400)
++++...|+|.+.....|... .+..++.+.+++|+.|+|.-+.+ .+.| .+++.+|+|++|
T Consensus 61 ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~n---sp~w---------~~~~~~~~nv~i 128 (326)
T PF00295_consen 61 NITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRN---SPFW---------HIHINDCDNVTI 128 (326)
T ss_dssp EEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES----SSE---------SEEEESEEEEEE
T ss_pred EEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecC---CCee---------EEEEEccCCeEE
Confidence 555555567765433333321 12348999999999999943333 3445 389999999999
Q ss_pred EceEEeCCC----CceEEEEeecceEEeceEEECCCCCCCCCeeeecCcc-cEEEEeeEEecCCceEEEcC---C-----
Q 041224 164 RGLTHVDSP----GNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSS-NVQIRDCTIATGDDCVAIGT---D----- 230 (400)
Q Consensus 164 ~~v~i~ns~----~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~-nV~I~n~~i~~~dD~i~i~s---~----- 230 (400)
++++|.++. ..++++..|+|++|+|+.|.+. .|+|.+.+.+ ||+|+||++..+. ++++++ +
T Consensus 129 ~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~g-----DD~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~~~~~~~ 202 (326)
T PF00295_consen 129 SNITINNPANSPNTDGIDIDSSKNVTIENCFIDNG-----DDCIAIKSGSGNILVENCTCSGGH-GISIGSEGSGGSQND 202 (326)
T ss_dssp ESEEEEEGGGCTS--SEEEESEEEEEEESEEEESS-----SESEEESSEECEEEEESEEEESSS-EEEEEEESSSSE--E
T ss_pred cceEEEecCCCCCcceEEEEeeeEEEEEEeecccc-----cCcccccccccceEEEeEEEeccc-cceeeeccCCccccE
Confidence 999998754 3689999999999999999995 5789987765 9999999998765 588875 2
Q ss_pred ceeEEEEeeEEcCC-ceEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecCC---------CeeEEeEEEEeEEE
Q 041224 231 TSNIAVTGVICGPG-HGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGG---------SGHARRISFERIRL 300 (400)
Q Consensus 231 ~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~---------~g~i~nI~f~ni~~ 300 (400)
.+||+++||++.++ .|+.|++.- +..+.++||+|+|++|.+..+++.|...... ...|+||+|+||+.
T Consensus 203 i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg 280 (326)
T PF00295_consen 203 IRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITG 280 (326)
T ss_dssp EEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEE
T ss_pred EEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEE
Confidence 48999999999876 599999852 2468999999999999999899988864321 25799999999999
Q ss_pred ecCC-ccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEEec
Q 041224 301 ESSD-NPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTS 341 (400)
Q Consensus 301 ~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~ 341 (400)
.... .++.+.- . +..+++||+|+||.++.
T Consensus 281 ~~~~~~~i~i~~---~---------~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 281 TSAGSSAISIDC---S---------PGSPCSNITFENVNITG 310 (326)
T ss_dssp EESTSEEEEEE----B---------TTSSEEEEEEEEEEEES
T ss_pred EeccceEEEEEE---C---------CcCcEEeEEEEeEEEEc
Confidence 8776 5665552 1 22359999999999998
No 18
>PLN02155 polygalacturonase
Probab=99.83 E-value=1.8e-18 Score=169.78 Aligned_cols=219 Identities=16% Similarity=0.275 Sum_probs=167.1
Q ss_pred CeEEEEeEEEEccCCCCccC----CC--cc-ccEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEE
Q 041224 92 SINVQIQGNIVAPHSSAWDG----HD--KK-KWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFR 164 (400)
Q Consensus 92 ~v~l~~~g~i~~~~~~~~~~----~~--~~-~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~ 164 (400)
++.|.. |+|-+....-|.. .. .+ .++.+.+++|+.|+|.-+. ..+.| .+++.+|+|++|+
T Consensus 116 ~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~---nSp~w---------~i~~~~~~nv~i~ 182 (394)
T PLN02155 116 RFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSM---NSQVS---------HMTLNGCTNVVVR 182 (394)
T ss_pred CCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEE---cCCCe---------EEEEECeeeEEEE
Confidence 666665 7775443332321 11 12 3789999999999994333 33445 4899999999999
Q ss_pred ceEEeCCC----CceEEEEeecceEEeceEEECCCCCCCCCeeeecC-cccEEEEeeEEecCCceEEEcCC--------c
Q 041224 165 GLTHVDSP----GNHISVYGCNDVSISNLKIIAPESSPNTDGIDITH-SSNVQIRDCTIATGDDCVAIGTD--------T 231 (400)
Q Consensus 165 ~v~i~ns~----~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~-s~nV~I~n~~i~~~dD~i~i~s~--------~ 231 (400)
+++|.++. ..++++..|+||.|+|++|.+. .|+|.+.+ |+||+|+||.+..++ +++++|. .
T Consensus 183 ~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~g-----DDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V 256 (394)
T PLN02155 183 NVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTG-----DDCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGV 256 (394)
T ss_pred EEEEECCCCCCCCCccccccceeEEEEeeEEecC-----CceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcE
Confidence 99998743 2789999999999999999995 46788864 789999999998765 6999872 5
Q ss_pred eeEEEEeeEEcCC-ceEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecCC----------CeeEEeEEEEeEEE
Q 041224 232 SNIAVTGVICGPG-HGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGG----------SGHARRISFERIRL 300 (400)
Q Consensus 232 ~ni~i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~----------~g~i~nI~f~ni~~ 300 (400)
+||+|+||++.++ .|++|++... +..+.++||+|+|++|.+...++.|...+.. ...|+||+|+|++.
T Consensus 257 ~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~g 335 (394)
T PLN02155 257 ENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQG 335 (394)
T ss_pred EEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEE
Confidence 9999999999876 5999998421 1368999999999999999999999764321 13799999999999
Q ss_pred ecC-CccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEEecC
Q 041224 301 ESS-DNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSS 342 (400)
Q Consensus 301 ~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~~ 342 (400)
+.. +.++.+. +. +..+++||+|+||.++..
T Consensus 336 t~~~~~a~~l~---c~---------~~~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 336 TSATQEAMKLV---CS---------KSSPCTGITLQDIKLTYN 366 (394)
T ss_pred EecCCceEEEE---eC---------CCCCEEEEEEEeeEEEec
Confidence 876 3454444 22 233599999999999865
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.67 E-value=7.5e-14 Score=134.31 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCCceEEecCCCEEEe-eeeeecCCCCCCCeEEEEeE
Q 041224 52 FLKAWKSICGSKSNAAPLLVPAGKTFLL-NPVSFQGPCKSSSINVQIQG 99 (400)
Q Consensus 52 iq~Ai~~a~~~~~gg~~v~iP~G~~Y~~-~~l~l~~~~ks~~v~l~~~g 99 (400)
||+|++ +++ .|++|+||+| +|.+ ++|.+. ++ +++|..+|
T Consensus 1 iQ~Ai~-~A~---~GDtI~l~~G-~Y~~~~~l~I~---~~-~Iti~G~g 40 (314)
T TIGR03805 1 LQEALI-AAQ---PGDTIVLPEG-VFQFDRTLSLD---AD-GVTIRGAG 40 (314)
T ss_pred CHhHHh-hCC---CCCEEEECCC-EEEcceeEEEe---CC-CeEEEecC
Confidence 699995 344 3789999999 9998 588885 34 78877653
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=2.4e-11 Score=122.59 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=128.6
Q ss_pred CCceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCC----ceEEEcCCceeEEEEeeEEcCCc-e
Q 041224 172 PGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGD----DCVAIGTDTSNIAVTGVICGPGH-G 246 (400)
Q Consensus 172 ~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~d----D~i~i~s~~~ni~i~n~~~~~~~-g 246 (400)
....+.+..|+||.+++++|.+++. -++++..|+|++++|.+|.+.+ |++.+.+ |+|++|++|+|..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 3467899999999999999999764 4689999999999999999865 4898888 999999999999875 5
Q ss_pred EEEeccCCCC---CCCCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCCCC
Q 041224 247 ISIGSLGANG---GTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQ 323 (400)
Q Consensus 247 i~igs~g~~~---~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~ 323 (400)
++++|..... ..+..++|.|+||.|.....++.+.++. +|.|+||++||+.|.+..++++|++...
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~--------- 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDG--------- 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeecc---------
Confidence 8888753221 2467799999999999776678777754 5899999999999999999999997633
Q ss_pred CcceeEEeEEEEeEEEecC
Q 041224 324 TSAVKVSDVSYIGFQGTSS 342 (400)
Q Consensus 324 ~~~~~i~nItf~nI~~~~~ 342 (400)
.++.++||+|+++.+...
T Consensus 381 -~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 -RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred -cceeEEEEEEecccccCc
Confidence 236799999999988766
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.29 E-value=7.2e-10 Score=106.81 Aligned_cols=162 Identities=19% Similarity=0.288 Sum_probs=125.3
Q ss_pred eceEEecCe----eEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCC---
Q 041224 124 NGLTVNGNG----KIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPES--- 196 (400)
Q Consensus 124 ~nv~I~G~G----~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~--- 196 (400)
++++|+|.| +|++.++.. ....+ ...+++++|+++++.++..+++.+..|++++|+++++.....
T Consensus 32 ~~Iti~G~g~~~tvid~~~~~~-------~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~ 103 (314)
T TIGR03805 32 DGVTIRGAGMDETILDFSGQVG-------GAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKS 103 (314)
T ss_pred CCeEEEecCCCccEEecccCCC-------CCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccc
Confidence 789998865 477765421 12345 446899999999999999999999999999999999974321
Q ss_pred CCCCCeeeecCcccEEEEeeEEecC-CceEEEcCCceeEEEEeeEEcCCc-eEEEeccCCCCCCCCEEEEEEEeeEEeCC
Q 041224 197 SPNTDGIDITHSSNVQIRDCTIATG-DDCVAIGTDTSNIAVTGVICGPGH-GISIGSLGANGGTSIVEDVHVRDCTFKGT 274 (400)
Q Consensus 197 ~~n~DGi~i~~s~nV~I~n~~i~~~-dD~i~i~s~~~ni~i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~v~N~~~~~~ 274 (400)
....+||.+..|++++|++|+++.. |.+|.++. ++|+.|+|+++.... ||.+.. ..++.|+|+.+.+.
T Consensus 104 ~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N 173 (314)
T TIGR03805 104 SNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNN 173 (314)
T ss_pred cCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEecc
Confidence 1357899999999999999999986 45898876 899999999998654 887742 36789999999988
Q ss_pred cceEEEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 275 KNGARIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 275 ~~gi~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
..|+.+-..++.. -.-+++++++..+.+.
T Consensus 174 ~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 174 TGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred ceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 8899886654322 2246777777777654
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.80 E-value=9.2e-08 Score=86.95 Aligned_cols=124 Identities=18% Similarity=0.345 Sum_probs=82.0
Q ss_pred EeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCC-----CCCCee------eecCcccEEEEeeEEecCCc
Q 041224 155 FGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESS-----PNTDGI------DITHSSNVQIRDCTIATGDD 223 (400)
Q Consensus 155 ~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~-----~n~DGi------~i~~s~nV~I~n~~i~~~dD 223 (400)
|..|++++++++++-+++-. +-.|+++.++|+.+.+.... -.-|++ .+++++||.|+|+++.+.|
T Consensus 94 fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD- 169 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD- 169 (277)
T ss_pred hhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc-
Confidence 45678888888888776532 22556666666666432110 012233 3356899999999999877
Q ss_pred eEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecC
Q 041224 224 CVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESS 303 (400)
Q Consensus 224 ~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~ 303 (400)
++.. ++||+|.|+.+. |=.+|. ..+|+++.||++.+.+ |+ -+++|++.+|+++.++
T Consensus 170 --AFWn-~eNVtVyDS~i~---GEYLgW--------~SkNltliNC~I~g~Q-pL---------CY~~~L~l~nC~~~~t 225 (277)
T PF12541_consen 170 --AFWN-CENVTVYDSVIN---GEYLGW--------NSKNLTLINCTIEGTQ-PL---------CYCDNLVLENCTMIDT 225 (277)
T ss_pred --cccc-CCceEEEcceEe---eeEEEE--------EcCCeEEEEeEEeccC-cc---------EeecceEEeCcEeecc
Confidence 3444 899999998875 322222 3478999999998763 33 4678888999998876
Q ss_pred Ccc
Q 041224 304 DNP 306 (400)
Q Consensus 304 ~~~ 306 (400)
.-+
T Consensus 226 dla 228 (277)
T PF12541_consen 226 DLA 228 (277)
T ss_pred eee
Confidence 543
No 23
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=2.7e-06 Score=78.82 Aligned_cols=156 Identities=22% Similarity=0.271 Sum_probs=97.1
Q ss_pred eEEEEeEEEEccCCCCccCCCccccEEEeeeeceEEecCe---eEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEe
Q 041224 93 INVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNG---KIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHV 169 (400)
Q Consensus 93 v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G---~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ 169 (400)
+.|.+.|+|.++.- ....+.+..+.|++|.|.| ++.|- .+.+...+||.|++++|+
T Consensus 77 ~ii~v~Gti~~s~p-------s~~k~~iki~sNkTivG~g~~a~~~g~--------------gl~i~~a~NVIirNltf~ 135 (345)
T COG3866 77 VIIVVKGTITASTP-------SDKKITIKIGSNKTIVGSGADATLVGG--------------GLKIRDAGNVIIRNLTFE 135 (345)
T ss_pred EEEEEcceEeccCC-------CCceEEEeeccccEEEeeccccEEEec--------------eEEEEeCCcEEEEeeEEE
Confidence 45666677776521 0113667778899999865 33331 255555666666666665
Q ss_pred CCCCceEEEEeecceEEeceEEECCCCCCCCCeeee-cCcccEEEEeeEEec---------CCceEEEcCCceeEEEEee
Q 041224 170 DSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDI-THSSNVQIRDCTIAT---------GDDCVAIGTDTSNIAVTGV 239 (400)
Q Consensus 170 ns~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i-~~s~nV~I~n~~i~~---------~dD~i~i~s~~~ni~i~n~ 239 (400)
..+.| -++-|+|.+ ..++||.|++|++.. +|..+.++.++..|+|++|
T Consensus 136 ~~~~~----------------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n 193 (345)
T COG3866 136 GFYQG----------------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYN 193 (345)
T ss_pred eeccC----------------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEee
Confidence 54311 123467777 667888888888876 3556788888889999999
Q ss_pred EEcCCc-eEEEeccCCCCCCCCEEEEEEEeeEEeCCcc---eEEEEeecCCCeeEEeEEEE
Q 041224 240 ICGPGH-GISIGSLGANGGTSIVEDVHVRDCTFKGTKN---GARIKTWQGGSGHARRISFE 296 (400)
Q Consensus 240 ~~~~~~-gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~---gi~i~~~~~~~g~i~nI~f~ 296 (400)
.|.... ++-+|+.-.......-.+|+++++.+.+... -+|+.. -+|.|-.|+
T Consensus 194 ~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~-----vHvyNNYy~ 249 (345)
T COG3866 194 KFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGM-----VHVYNNYYE 249 (345)
T ss_pred eeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeE-----EEEeccccc
Confidence 987654 6677764221123455778888888887532 233332 355555555
No 24
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.68 E-value=5e-06 Score=82.83 Aligned_cols=242 Identities=14% Similarity=0.164 Sum_probs=128.6
Q ss_pred CceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCC-------CCccCC-----Ccc---ccEE---EeeeeceE
Q 041224 66 AAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS-------SAWDGH-----DKK---KWLL---FSNVNGLT 127 (400)
Q Consensus 66 g~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~-------~~~~~~-----~~~---~~i~---~~~~~nv~ 127 (400)
..+|||.|| -|.-|++.+... .+ ++.+.+.|+|.+..- ..|... ..+ .++. ..+..+..
T Consensus 256 ~~~VYlApG-AyVkGAf~~~~~-~~-nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~ 332 (582)
T PF03718_consen 256 TKWVYLAPG-AYVKGAFEYTDT-QQ-NVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLT 332 (582)
T ss_dssp --EEEE-TT-EEEES-EEE----SS-EEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEE
T ss_pred ccEEEEcCC-cEEEEEEEEccC-Cc-eEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEE
Confidence 569999999 999998877522 45 777777788875432 122210 001 2232 34556888
Q ss_pred EecCeeEeCCCccccccCCCCCCceEEEeeeC----cEEEEceEEeCCCCc---eEEEEeecceEEeceEEECCCCCCCC
Q 041224 128 VNGNGKIDGKGASWWSNKQNQRPTALSFGSCN----NLVFRGLTHVDSPGN---HISVYGCNDVSISNLKIIAPESSPNT 200 (400)
Q Consensus 128 I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~----nv~i~~v~i~ns~~~---~i~~~~~~nv~i~~~~I~~~~~~~n~ 200 (400)
+.|.-+- ..++|. +.+.+-+ +..|++.++..+-.| ++.+ +.+-+|+||.++. |.
T Consensus 333 ~~GiTI~---~pP~~S---------m~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~l--y~nS~i~dcF~h~-----nD 393 (582)
T PF03718_consen 333 CEGITIN---DPPFHS---------MDLYGNENDKFSMNISNYKQVGAWYFQTDGIEL--YPNSTIRDCFIHV-----ND 393 (582)
T ss_dssp EES-EEE-----SS-S---------EEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEEE-----SS
T ss_pred EEeeEec---CCCcce---------EEecCCccccccceeeceeeeeeEEeccCCccc--cCCCeeeeeEEEe-----cC
Confidence 8884332 234554 5555444 478999999886554 4544 4788899999998 56
Q ss_pred CeeeecCcccEEEEeeEEecCCc--eEEEcC---CceeEEEEeeEEcC----------CceEEEeccCCC---------C
Q 041224 201 DGIDITHSSNVQIRDCTIATGDD--CVAIGT---DTSNIAVTGVICGP----------GHGISIGSLGAN---------G 256 (400)
Q Consensus 201 DGi~i~~s~nV~I~n~~i~~~dD--~i~i~s---~~~ni~i~n~~~~~----------~~gi~igs~g~~---------~ 256 (400)
|+|.+.. .++.|+||.++..+. .|.++- ..+||.|+|+.+-. ..+|---+. .+ .
T Consensus 394 D~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~-~y~~~~s~~~ad 471 (582)
T PF03718_consen 394 DAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSP-FYDDMASTKTAD 471 (582)
T ss_dssp -SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEEE---BTTS-SSS--BE
T ss_pred chhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEeccc-ccccccCCCCCC
Confidence 8888876 799999999987432 233332 26799999997631 123322221 11 0
Q ss_pred CCCCEEEEEEEeeEEeCCcc-eEEEEeecCCCeeEEeEEEEeEEEecC--C---cc-EEEEeeecCCCCCCCCCCcceeE
Q 041224 257 GTSIVEDVHVRDCTFKGTKN-GARIKTWQGGSGHARRISFERIRLESS--D---NP-IIIDQYYCGPNGDCKNQTSAVKV 329 (400)
Q Consensus 257 ~~~~i~ni~v~N~~~~~~~~-gi~i~~~~~~~g~i~nI~f~ni~~~~~--~---~~-i~i~~~~~~~~~~~~~~~~~~~i 329 (400)
....+++++|+|+++++... .++|+.. ..-+|+.++|..++.- . .. -.++..+..... .....
T Consensus 472 p~~ti~~~~~~nv~~EG~~~~l~ri~pl----qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~------~~~~~ 541 (582)
T PF03718_consen 472 PSTTIRNMTFSNVRCEGMCPCLFRIYPL----QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANN------KQNDT 541 (582)
T ss_dssp EEEEEEEEEEEEEEEECCE-ECEEE--S----EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--------B--E
T ss_pred cccceeeEEEEeEEEecccceeEEEeec----CCCcceEEEEeecccccCcccccceeecccccccccc------ccccc
Confidence 13457899999999999765 4677543 4456666677666622 1 11 223333322211 23447
Q ss_pred EeEEEEeEEEec
Q 041224 330 SDVSYIGFQGTS 341 (400)
Q Consensus 330 ~nItf~nI~~~~ 341 (400)
.+|.|+|.++-+
T Consensus 542 ~gi~i~N~tVgg 553 (582)
T PF03718_consen 542 MGIIIENWTVGG 553 (582)
T ss_dssp EEEEEEEEEETT
T ss_pred cceEEEeEEECC
Confidence 777777777654
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.68 E-value=3.5e-07 Score=83.25 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=76.7
Q ss_pred EEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCce
Q 041224 153 LSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTS 232 (400)
Q Consensus 153 i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ 232 (400)
..+++|+|+.++++.+.. ...|++|+||.|+|.++.+- |. ++.|+||+|.|++|..- -+.=.++
T Consensus 131 Yf~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~sK------DA--FWn~eNVtVyDS~i~GE----YLgW~Sk 194 (277)
T PF12541_consen 131 YFFMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDSK------DA--FWNCENVTVYDSVINGE----YLGWNSK 194 (277)
T ss_pred EeeeeccceEEeceEEeC----CEEeeceeeEEEEccEEecc------cc--cccCCceEEEcceEeee----EEEEEcC
Confidence 344566666666666654 24678899999999999984 33 47899999999999752 2222379
Q ss_pred eEEEEeeEEcCCceEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEE
Q 041224 233 NIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGAR 279 (400)
Q Consensus 233 ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~ 279 (400)
|+++.||++.+.+|+. +++|++.+||+|.+++-++.
T Consensus 195 NltliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdlaFE 230 (277)
T PF12541_consen 195 NLTLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDLAFE 230 (277)
T ss_pred CeEEEEeEEeccCccE-----------eecceEEeCcEeecceeeee
Confidence 9999999998888876 57999999999998866654
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.58 E-value=9.9e-07 Score=75.57 Aligned_cols=139 Identities=22% Similarity=0.341 Sum_probs=96.5
Q ss_pred eEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCc
Q 041224 152 ALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDT 231 (400)
Q Consensus 152 ~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~ 231 (400)
.|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+.+....++++++|.+.....++.+. +.
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 367778888999999999999999999999999999999998 356899988899999999999877677776 47
Q ss_pred eeEEEEeeEEcCCc--eEEEeccCCCCCCCCEEEEEEEeeEEeCCc-ceEEEEeecCCCeeEEeEEEEeEEEecCC-ccE
Q 041224 232 SNIAVTGVICGPGH--GISIGSLGANGGTSIVEDVHVRDCTFKGTK-NGARIKTWQGGSGHARRISFERIRLESSD-NPI 307 (400)
Q Consensus 232 ~ni~i~n~~~~~~~--gi~igs~g~~~~~~~i~ni~v~N~~~~~~~-~gi~i~~~~~~~g~i~nI~f~ni~~~~~~-~~i 307 (400)
.++++++|.+.... |+.+.. ...+++|+++++.+.. .|+.+.... -.+++++++++.+.. .++
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~~~~~gi 142 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISNNGGNGI 142 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEECESSEEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEeCcceeE
Confidence 89999999998642 677732 2456899999999876 678776542 236667777777654 454
Q ss_pred EE
Q 041224 308 II 309 (400)
Q Consensus 308 ~i 309 (400)
.+
T Consensus 143 ~~ 144 (158)
T PF13229_consen 143 YL 144 (158)
T ss_dssp E-
T ss_pred EE
Confidence 33
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.48 E-value=7.2e-06 Score=80.84 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=96.9
Q ss_pred eEEEeeeCcEEEEceEEeCCC------CceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEec-CCce
Q 041224 152 ALSFGSCNNLVFRGLTHVDSP------GNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIAT-GDDC 224 (400)
Q Consensus 152 ~i~~~~~~nv~i~~v~i~ns~------~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~-~dD~ 224 (400)
.+.-...++++|++++|.++. ...|.+..|++++|++++|.++. .-||.+..|+ ..|.++.|.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 566677999999999999876 34689999999999999999852 2578888887 5555555554 3445
Q ss_pred EEEcCCceeEEEEeeEEcCC--ceEEEecc------------------------CCCCC---CCCEEEEEEEeeEEeCCc
Q 041224 225 VAIGTDTSNIAVTGVICGPG--HGISIGSL------------------------GANGG---TSIVEDVHVRDCTFKGTK 275 (400)
Q Consensus 225 i~i~s~~~ni~i~n~~~~~~--~gi~igs~------------------------g~~~~---~~~i~ni~v~N~~~~~~~ 275 (400)
|.+.. +.+..|+++++... .||.+... ++++. --...+++|+++++.++.
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 55554 66777777776643 24444321 11111 012356788888888887
Q ss_pred -ceEEEEeecCCCeeEEeEEEEeEEEecCCc-cEE
Q 041224 276 -NGARIKTWQGGSGHARRISFERIRLESSDN-PII 308 (400)
Q Consensus 276 -~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~-~i~ 308 (400)
.|+++.+. +|+.|++.++++..+ +++
T Consensus 262 ~dgI~~nss-------s~~~i~~N~~~~~R~~alh 289 (455)
T TIGR03808 262 YSAVRGNSA-------SNIQITGNSVSDVREVALY 289 (455)
T ss_pred cceEEEEcc-------cCcEEECcEeeeeeeeEEE
Confidence 78887653 566777777777666 554
No 28
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.46 E-value=5.1e-06 Score=76.40 Aligned_cols=279 Identities=19% Similarity=0.284 Sum_probs=145.9
Q ss_pred CCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEE-Ee-eeeeecCCCCCCCeEEEEeEEEEccCC
Q 041224 29 YASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTF-LL-NPVSFQGPCKSSSINVQIQGNIVAPHS 106 (400)
Q Consensus 29 ~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y-~~-~~l~l~~~~ks~~v~l~~~g~i~~~~~ 106 (400)
+.+++|+.||-+ .|=-++|.+|+. .+.||++|+|-+. .+ .++.+ +. .-||++.|.+.+..
T Consensus 31 ~~~~vni~dy~~-----~dwiasfkqaf~-------e~qtvvvpagl~cenint~ifi----p~-gktl~v~g~l~gng- 92 (464)
T PRK10123 31 ARQSVNINDYNP-----HDWIASFKQAFS-------EGQTVVVPAGLVCDNINTGIFI----PP-GKTLHILGSLRGNG- 92 (464)
T ss_pred CCceeehhhcCc-----ccHHHHHHHHhc-------cCcEEEecCccEecccccceEe----CC-CCeEEEEEEeecCC-
Confidence 567899999975 455678999984 2679999999333 23 36777 35 78899999887543
Q ss_pred CCccCCCccccEEEeeeeceEEecC--eeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCC-CceEEEE----
Q 041224 107 SAWDGHDKKKWLLFSNVNGLTVNGN--GKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSP-GNHISVY---- 179 (400)
Q Consensus 107 ~~~~~~~~~~~i~~~~~~nv~I~G~--G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~-~~~i~~~---- 179 (400)
++.++.-++|+ +.|. |.+. ...+. .+.++.+|+++....-. --.+.+.
T Consensus 93 -------rgrfvlqdg~q---v~ge~~g~~h--------------nitld-vrgsdc~ikgiamsgfgpvtqiyiggk~p 147 (464)
T PRK10123 93 -------RGRFVLQDGSQ---VTGEEGGSMH--------------NITLD-VRGSDCTIKGLAMSGFGPVTQIYIGGKNK 147 (464)
T ss_pred -------ceeEEEecCCE---eecCCCceee--------------eEEEe-eccCceEEeeeeecccCceeEEEEcCCCc
Confidence 23444444422 3332 2110 00111 12345556655553321 1122222
Q ss_pred -eecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEec-CCceE----EEcCCceeEEEE-----eeEEcCC---c
Q 041224 180 -GCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIAT-GDDCV----AIGTDTSNIAVT-----GVICGPG---H 245 (400)
Q Consensus 180 -~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~-~dD~i----~i~s~~~ni~i~-----n~~~~~~---~ 245 (400)
--+|++|+++++....++--..|++-. -..+.|.||.++. ..|+| ++. -+||+|+ .+.|.++ .
T Consensus 148 rvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnvain--dr~ilisdhvie~inctngkinw 224 (464)
T PRK10123 148 RVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAIN--DRDILISDHVIERINCTNGKINW 224 (464)
T ss_pred hhhhccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEEEec--ccceeeehheheeecccCCcccc
Confidence 235666667666654322222344322 2456677777765 33443 333 2455554 4445554 4
Q ss_pred eEEEeccCCCC-----CCCCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecCCc-cEE---EEeeecCC
Q 041224 246 GISIGSLGANG-----GTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDN-PII---IDQYYCGP 316 (400)
Q Consensus 246 gi~igs~g~~~-----~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~-~i~---i~~~~~~~ 316 (400)
|+.||-.|... +...++|..|.|++-.+...-+.+.. |..=.|+||..+||+-+=.+. +|. +. .|
T Consensus 225 gigiglagstydn~ype~q~vknfvvanitgs~crqlvhven--gkhfvirnvkaknitpdfskkagidnatva-iy--- 298 (464)
T PRK10123 225 GIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVEN--GKHFVIRNIKAKNITPDFSKKAGIDNATVA-IY--- 298 (464)
T ss_pred eeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecC--CcEEEEEeeeccccCCCchhhcCCCcceEE-EE---
Confidence 78777665432 34567777777777666544333322 323456777777765432221 110 00 01
Q ss_pred CCCCCCCCcceeEEeEEEEeEEEecCCc----ceE----EEEecCCCCeecEEEEeEEEEec
Q 041224 317 NGDCKNQTSAVKVSDVSYIGFQGTSSTE----EAV----QLSCSESVGCTDIKINNIDITHS 370 (400)
Q Consensus 317 ~~~~~~~~~~~~i~nItf~nI~~~~~~~----~~i----~i~~~~~~~~~ni~~~nv~i~~~ 370 (400)
-.+|..++||.+..... +++ ++.-.......||.++|-++.++
T Consensus 299 -----------gcdnfvidni~mvnsagmligygvikg~ylsipqnfkln~i~ldn~~l~yk 349 (464)
T PRK10123 299 -----------GCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFKLNNIQLDNTHLAYK 349 (464)
T ss_pred -----------cccceEEeccccccccccEEEeeeeeccEecccccceeceEeeccccccee
Confidence 14677777887765421 111 11111233466777777666654
No 29
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.45 E-value=3e-06 Score=72.53 Aligned_cols=139 Identities=22% Similarity=0.304 Sum_probs=93.1
Q ss_pred EEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCCC
Q 041224 119 LFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSP 198 (400)
Q Consensus 119 ~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~~ 198 (400)
.+.+..+++|++ .+|... ....+.+..+..++|++.+|.+ ...++.+....++.++++.+....
T Consensus 4 ~i~~~~~~~i~~-~~i~~~-----------~~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~--- 67 (158)
T PF13229_consen 4 SINNGSNVTIRN-CTISNN-----------GGDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG--- 67 (158)
T ss_dssp EETTCEC-EEES-EEEESS-----------SSECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S---
T ss_pred EEECCcCeEEee-eEEEeC-----------CCeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc---
Confidence 344555666666 444432 1236888888889999999999 778899999999999999999843
Q ss_pred CCCeeeecCcccEEEEeeEEecCCc-eEEEcCCceeEEEEeeEEcCC--ceEEEeccCCCCCCCCEEEEEEEeeEEeCCc
Q 041224 199 NTDGIDITHSSNVQIRDCTIATGDD-CVAIGTDTSNIAVTGVICGPG--HGISIGSLGANGGTSIVEDVHVRDCTFKGTK 275 (400)
Q Consensus 199 n~DGi~i~~s~nV~I~n~~i~~~dD-~i~i~s~~~ni~i~n~~~~~~--~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~ 275 (400)
.|+.+..+.+++|++|.+....+ +|.+.....+++|++|++... .|+.+... .-.+++|++|++.+..
T Consensus 68 --~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 68 --SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTISNNG 138 (158)
T ss_dssp --EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEEECES
T ss_pred --ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEEEeCc
Confidence 68888899999999999998654 888874267899999999863 57777542 1347888999998865
Q ss_pred -ceEEEEe
Q 041224 276 -NGARIKT 282 (400)
Q Consensus 276 -~gi~i~~ 282 (400)
.|+++..
T Consensus 139 ~~gi~~~~ 146 (158)
T PF13229_consen 139 GNGIYLIS 146 (158)
T ss_dssp SEEEE-TT
T ss_pred ceeEEEEC
Confidence 5776543
No 30
>PLN02497 probable pectinesterase
Probab=98.44 E-value=3.7e-05 Score=73.92 Aligned_cols=237 Identities=16% Similarity=0.172 Sum_probs=122.0
Q ss_pred chhhhHHHHHHhhhhccccCcccccCCCC--eeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEe
Q 041224 2 RELLIIILILSMAIWGSSFQPCEAFPSYA--SSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLL 79 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~ 79 (400)
||++++|+.||++++. ....+.+... ..+-|. .||. -|-..||+||+++......--+|+|-+| +|+-
T Consensus 4 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~Va-----~dGs-Gdf~TIq~AIdavP~~~~~~~~I~Ik~G-~Y~E 73 (331)
T PLN02497 4 HRIIIGLIALCCFCLP---HLIEAKPFGVYQQQVFVD-----QSGH-GNFTTIQSAIDSVPSNNKHWFCINVKAG-LYRE 73 (331)
T ss_pred eeehHHHHHHHHhhcc---hhhhcCCccccceEEEEC-----CCCC-CCccCHHHHHhhccccCCceEEEEEeCc-EEEE
Confidence 4777777777766653 2222222211 233442 2342 3578999999654443212346999999 9965
Q ss_pred eeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeC
Q 041224 80 NPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCN 159 (400)
Q Consensus 80 ~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~ 159 (400)
. +.+... |. +++|..+|.= ...|...+.. ++ ....-.....+
T Consensus 74 k-V~Ip~~-k~-~itl~G~g~~-------------~tiIt~~~~~-------~t---------------~~SaT~~v~a~ 115 (331)
T PLN02497 74 K-VKIPYD-KP-FIVLVGAGKR-------------RTRIEWDDHD-------ST---------------AQSPTFSTLAD 115 (331)
T ss_pred E-EEecCC-CC-cEEEEecCCC-------------CceEEEeccc-------cc---------------cCceEEEEecC
Confidence 4 333211 45 7888776420 0111111100 00 00112234577
Q ss_pred cEEEEceEEeCCCCc-----------eEEE-EeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEE
Q 041224 160 NLVFRGLTHVDSPGN-----------HISV-YGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAI 227 (400)
Q Consensus 160 nv~i~~v~i~ns~~~-----------~i~~-~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i 227 (400)
++..+|++|+|...+ .+.+ ...+...+.+|.+....|. +-.. ..+-.++||+|...=|-| +
T Consensus 116 ~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDT-----Ly~~-~gRqyf~~C~IeG~VDFI-F 188 (331)
T PLN02497 116 NTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDT-----LWDS-DGRHYFKRCTIQGAVDFI-F 188 (331)
T ss_pred CeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccc-----eeeC-CCcEEEEeCEEEecccEE-c
Confidence 889999999886431 2222 2356777788888775432 2222 235677788887765544 2
Q ss_pred cCCceeEEEEeeEEcCC--------ce-EEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEE-eecCCCeeEEeEEEEe
Q 041224 228 GTDTSNIAVTGVICGPG--------HG-ISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIK-TWQGGSGHARRISFER 297 (400)
Q Consensus 228 ~s~~~ni~i~n~~~~~~--------~g-i~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~-~~~~~~g~i~nI~f~n 297 (400)
+ .....++||++..- .| |.--+ +.....-....|.||++.+.. -.++. .| ..-..+.|.+
T Consensus 189 G--~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~---r~~~~~~~GfvF~~C~itg~g-~~yLGRPW----~~ysrvvf~~ 258 (331)
T PLN02497 189 G--SGQSIYESCVIQVLGGQLEPGLAGFITAQG---RTNPYDANGFVFKNCLVYGTG-SAYLGRPW----RGYSRVLFYN 258 (331)
T ss_pred c--CceEEEEccEEEEecCcCCCCCceEEEecC---CCCCCCCceEEEEccEEccCC-CEEEeCCC----CCCceEEEEe
Confidence 2 24567777777521 12 11111 001223346777788777642 22232 11 2235666766
Q ss_pred EEEecC
Q 041224 298 IRLESS 303 (400)
Q Consensus 298 i~~~~~ 303 (400)
..|.+.
T Consensus 259 t~m~~~ 264 (331)
T PLN02497 259 SNLTDV 264 (331)
T ss_pred cccCCe
Confidence 666653
No 31
>PLN02176 putative pectinesterase
Probab=98.44 E-value=7.4e-05 Score=72.17 Aligned_cols=201 Identities=18% Similarity=0.233 Sum_probs=113.3
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++.......-+|+|++| +|+-. |.+... |. +++|..+|.- ...|...+ +.
T Consensus 49 Gdf~TIq~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~Ip~~-k~-~vtl~G~g~~-------------~TiIt~~~--~~ 109 (340)
T PLN02176 49 RYFKTVQSAIDSIPLQNQNWIRILIQNG-IYREK-VTIPKE-KG-YIYMQGKGIE-------------KTIIAYGD--HQ 109 (340)
T ss_pred CCccCHHHHHhhchhcCCceEEEEECCc-EEEEE-EEECCC-Cc-cEEEEEcCCC-------------ceEEEEeC--Cc
Confidence 3588999999654443212346899999 99854 444221 45 8888876420 01111111 00
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----------ceEEE-EeecceEEeceEEECCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----------NHISV-YGCNDVSISNLKIIAPE 195 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----------~~i~~-~~~~nv~i~~~~I~~~~ 195 (400)
++ + ....+. ..++++..++++|+|... ..+.+ ...+...+.+|++....
T Consensus 110 -----~t-~-------------~saT~~-v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~Q 169 (340)
T PLN02176 110 -----AT-D-------------TSATFT-SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQ 169 (340)
T ss_pred -----cc-c-------------cceEEE-EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEeccc
Confidence 00 0 001122 257889999999988632 22222 24678889999998754
Q ss_pred CCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC---------ce-EEEeccCCCCCCCCEEEEE
Q 041224 196 SSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG---------HG-ISIGSLGANGGTSIVEDVH 265 (400)
Q Consensus 196 ~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~---------~g-i~igs~g~~~~~~~i~ni~ 265 (400)
| -+-.. ..+-.+++|+|...=|-| ++ .....++||++..- .| |.--+ + .....-....
T Consensus 170 D-----TLy~~-~gRqyf~~CyIeG~VDFI-FG--~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~--r-~~~~~~~Gfv 237 (340)
T PLN02176 170 D-----TLFDG-KGRHYYKRCVISGGIDFI-FG--YAQSIFEGCTLKLTLGIYPPNEPYGTITAQG--R-PSPSDKGGFV 237 (340)
T ss_pred c-----eeEeC-CcCEEEEecEEEecccEE-ec--CceEEEeccEEEEecccCCCCCCcEEEEeCC--C-CCCCCCcEEE
Confidence 3 33322 346788999998876655 23 34688888888521 12 22111 0 0123345788
Q ss_pred EEeeEEeCCcceEEEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 266 VRDCTFKGTKNGARIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 266 v~N~~~~~~~~gi~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
|.||++.+.. -.++ |+. ..-..+.|.|..|.+.
T Consensus 238 F~~C~itg~g-~~yL----GRPW~~yarvVf~~t~m~~~ 271 (340)
T PLN02176 238 FKDCTVTGVG-KALL----GRAWGSYARVIFYRSRFSDV 271 (340)
T ss_pred EECCEEccCc-ceee----ecCCCCCceEEEEecCcCCe
Confidence 9999997643 2222 221 3345677777777653
No 32
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.43 E-value=2.1e-05 Score=77.49 Aligned_cols=183 Identities=16% Similarity=0.208 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccc-cEEEeeeece
Q 041224 48 DSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKK-WLLFSNVNGL 126 (400)
Q Consensus 48 dt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~-~i~~~~~~nv 126 (400)
+.++||+||++ +. .|.+|+++.| +|.-..|.+.+ .|+ ...| .+.++....+
T Consensus 3 s~~~lq~Ai~~-a~---pGD~I~L~~G-ty~~~~i~~~~-----------~GT------------~~~PItl~Ae~~G~v 54 (425)
T PF14592_consen 3 SVAELQSAIDN-AK---PGDTIVLADG-TYKDVEIVFKG-----------SGT------------AAKPITLRAENPGKV 54 (425)
T ss_dssp SHHHHHHHHHH------TT-EEEE-SE-EEET-EEEE-S-------------B------------TTB-EEEEESSTTSE
T ss_pred CHHHHHHHHHh-CC---CCCEEEECCc-eeecceEEEEe-----------ccc------------CCCCEEEEecCCCeE
Confidence 56899999954 44 3789999999 99633344421 121 0011 1223333344
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCC--CC-----ceEEE--EeecceEEeceEEECCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDS--PG-----NHISV--YGCNDVSISNLKIIAPESS 197 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns--~~-----~~i~~--~~~~nv~i~~~~I~~~~~~ 197 (400)
.|+|... +.+. .+.++|+|+++++. +. +.... ..+.+.++.++.|.....
T Consensus 55 vi~G~s~-------------------l~i~-G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~- 113 (425)
T PF14592_consen 55 VITGESN-------------------LRIS-GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNN- 113 (425)
T ss_dssp EEEES-E-------------------EEE--SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--S-
T ss_pred EEeccee-------------------EEEE-eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCC-
Confidence 5554322 2232 35667777777652 11 11111 246677777777775321
Q ss_pred CCCCe--eee----cCcccEEEEeeEEecC---CceEEEc----C---CceeEEEEeeEEcC-----Cc---eEEEeccC
Q 041224 198 PNTDG--IDI----THSSNVQIRDCTIATG---DDCVAIG----T---DTSNIAVTGVICGP-----GH---GISIGSLG 253 (400)
Q Consensus 198 ~n~DG--i~i----~~s~nV~I~n~~i~~~---dD~i~i~----s---~~~ni~i~n~~~~~-----~~---gi~igs~g 253 (400)
+..+. .-+ ...++-+|++|+|... .--+.+. + ...+-+|++++|.. +. .|+||...
T Consensus 114 ~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~ 193 (425)
T PF14592_consen 114 PDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSH 193 (425)
T ss_dssp S-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SST
T ss_pred cccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEeccc
Confidence 11111 112 2357777777777653 2223333 1 12345677777751 22 27776542
Q ss_pred CCCCCCCEEEEEEEeeEEeCCcc---eEEEEe
Q 041224 254 ANGGTSIVEDVHVRDCTFKGTKN---GARIKT 282 (400)
Q Consensus 254 ~~~~~~~i~ni~v~N~~~~~~~~---gi~i~~ 282 (400)
....-.+.+|+++.|++.+. -|++|+
T Consensus 194 ---~S~~~s~t~Ve~NlFe~cdGE~EIISvKS 222 (425)
T PF14592_consen 194 ---SSMSDSNTTVENNLFERCDGEVEIISVKS 222 (425)
T ss_dssp ---T-B-----EEES-EEEEE-SSSEEEEEES
T ss_pred ---ccccccceeeecchhhhcCCceeEEEeec
Confidence 23444666666666665432 355555
No 33
>smart00656 Amb_all Amb_all domain.
Probab=98.40 E-value=1.2e-05 Score=71.80 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=74.7
Q ss_pred ecceEEeceEEECCCC--CCCCCeeeecCcccEEEEeeEEecC----------CceEEEcCCceeEEEEeeEEcCCc-eE
Q 041224 181 CNDVSISNLKIIAPES--SPNTDGIDITHSSNVQIRDCTIATG----------DDCVAIGTDTSNIAVTGVICGPGH-GI 247 (400)
Q Consensus 181 ~~nv~i~~~~I~~~~~--~~n~DGi~i~~s~nV~I~n~~i~~~----------dD~i~i~s~~~ni~i~n~~~~~~~-gi 247 (400)
++||.|+|++|+.... ..+.|+|.+.++++|.|++|.+..+ |..+.++.++.+|++++|.|...+ +.
T Consensus 39 ~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~ 118 (190)
T smart00656 39 VSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVM 118 (190)
T ss_pred cceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEE
Confidence 4455555555554321 1367999999999999999999986 556788888999999999997554 77
Q ss_pred EEeccCCCCCCCCEEEEEEEeeEEeCCcc-eEEEEeecCCCeeEEeEEEEeE
Q 041224 248 SIGSLGANGGTSIVEDVHVRDCTFKGTKN-GARIKTWQGGSGHARRISFERI 298 (400)
Q Consensus 248 ~igs~g~~~~~~~i~ni~v~N~~~~~~~~-gi~i~~~~~~~g~i~nI~f~ni 298 (400)
.+|+.-.. ......+|++.++.+.+... .-+++ .+..++.|-.|.|.
T Consensus 119 liG~~d~~-~~~~~~~vT~h~N~~~~~~~R~P~~r---~g~~hv~NN~~~n~ 166 (190)
T smart00656 119 LLGHSDSD-TDDGKMRVTIAHNYFGNLRQRAPRVR---FGYVHVYNNYYTGW 166 (190)
T ss_pred EEccCCCc-cccccceEEEECcEEcCcccCCCccc---CCEEEEEeeEEeCc
Confidence 88763111 12235689999999987422 22331 11245555555554
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.38 E-value=1.9e-05 Score=73.08 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=89.8
Q ss_pred eEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCc
Q 041224 152 ALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDT 231 (400)
Q Consensus 152 ~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~ 231 (400)
.+.+..+.+++|++.++.+. .+++++..+.+++|++..+... ..||.+..+.+.+|+++.|.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 46788889999999998887 7889999999999999998873 378988888877999999988777888876 6
Q ss_pred eeEEEEeeEEcCC-ceEEEeccCCCCCCCCEEEEEEEeeEEeCC-cceEEE
Q 041224 232 SNIAVTGVICGPG-HGISIGSLGANGGTSIVEDVHVRDCTFKGT-KNGARI 280 (400)
Q Consensus 232 ~ni~i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~v~N~~~~~~-~~gi~i 280 (400)
.+.+|+++++... .||.+... .+.+|+++++.+. ..|+++
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEE
Confidence 6778888888643 47777431 6677888888877 678873
No 35
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.31 E-value=3.9e-05 Score=70.99 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=109.7
Q ss_pred eEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCc
Q 041224 152 ALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDT 231 (400)
Q Consensus 152 ~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~ 231 (400)
.+.+.++++..|++.++.+.. .++.+..+.+++|++++|... ..||++..+++++|+++.+.....+|.+...
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s- 87 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMGS- 87 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEcC-
Confidence 488889999999999997654 677899999999999999983 6799999999999999999998899999884
Q ss_pred eeEEEEeeEEcCC-ceEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecC-CccEE
Q 041224 232 SNIAVTGVICGPG-HGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESS-DNPII 308 (400)
Q Consensus 232 ~ni~i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~-~~~i~ 308 (400)
.+.+|+++++... .||.+.. ..+.+|+++++.+...|+++... .+.++++.++.+. ..++.
T Consensus 88 ~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 88 SNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCCCccceE
Confidence 4559999999764 4887743 24588999999988889988653 5666777777766 66776
No 36
>PLN02682 pectinesterase family protein
Probab=98.27 E-value=0.00015 Score=70.75 Aligned_cols=214 Identities=14% Similarity=0.181 Sum_probs=117.5
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++.......-+|+|.+| +|+-. |.+... |. +++|..+|.= ...|...+..+
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G-~Y~Ek-V~Ip~~-k~-~Itl~G~g~~-------------~TiIt~~~~a~- 141 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAG-TYREK-VNIPPL-KA-YITLEGAGAD-------------KTIIQWGDTAD- 141 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCc-eeeEE-EEEecc-Cc-eEEEEecCCC-------------ccEEEeccccC-
Confidence 4678999999654433212457999999 99754 444211 45 8888877420 00111111000
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC---------ceEEE-EeecceEEeceEEECCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG---------NHISV-YGCNDVSISNLKIIAPES 196 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~---------~~i~~-~~~~nv~i~~~~I~~~~~ 196 (400)
.....|..+-+ ....-.....+++..+|++|+|... ..+.+ ...+...+.+|++....|
T Consensus 142 ------~~~~~g~~~gT-----~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QD 210 (369)
T PLN02682 142 ------TPGPGGRPLGT-----YGSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQD 210 (369)
T ss_pred ------ccCCCCCcccc-----ccceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecccc
Confidence 00011111110 1123344567899999999998642 12332 246788888888888544
Q ss_pred CCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcC---Cce-EEEeccCCCCCCCCEEEEEEEeeEEe
Q 041224 197 SPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGP---GHG-ISIGSLGANGGTSIVEDVHVRDCTFK 272 (400)
Q Consensus 197 ~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~---~~g-i~igs~g~~~~~~~i~ni~v~N~~~~ 272 (400)
-+-.. ..+-.++||+|...=|-| ++ .....+++|++.. ..| |.--+ + .....-....|.||++.
T Consensus 211 -----TLy~~-~gRqyf~~C~IeG~VDFI-FG--~g~a~Fe~C~I~s~~~~~G~ITA~~--r-~~~~~~~GfvF~~C~it 278 (369)
T PLN02682 211 -----TLYDH-LGRHYFKDCYIEGSVDFI-FG--NGLSLYEGCHLHAIARNFGALTAQK--R-QSVLEDTGFSFVNCKVT 278 (369)
T ss_pred -----ceEEC-CCCEEEEeeEEcccccEE-ec--CceEEEEccEEEEecCCCeEEecCC--C-CCCCCCceEEEEeeEec
Confidence 23222 245788888888766654 22 3577888888853 123 22111 0 01223457888888887
Q ss_pred CCcceEEEE-eecCCCeeEEeEEEEeEEEecCCcc
Q 041224 273 GTKNGARIK-TWQGGSGHARRISFERIRLESSDNP 306 (400)
Q Consensus 273 ~~~~gi~i~-~~~~~~g~i~nI~f~ni~~~~~~~~ 306 (400)
+.. .+++. .| ..-..+.|.|..|.+.=.|
T Consensus 279 g~g-~~yLGRpW----~~yarvVf~~t~m~~~I~p 308 (369)
T PLN02682 279 GSG-ALYLGRAW----GTFSRVVFAYTYMDNIIIP 308 (369)
T ss_pred CCC-ceEeecCC----CCcceEEEEeccCCCcCcC
Confidence 642 23332 12 3345777777777764333
No 37
>PLN02480 Probable pectinesterase
Probab=98.25 E-value=0.00028 Score=68.42 Aligned_cols=201 Identities=12% Similarity=0.093 Sum_probs=113.6
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
.|-..||+||+++....+.--+|+|.+| +|+ ..|.+... |. +++|..++. +..
T Consensus 58 g~f~TIQ~AIdaap~~~~~~~~I~Ik~G-vY~-E~V~I~~~-kp-~ItL~G~g~-----------------------~~T 110 (343)
T PLN02480 58 GDFTSVQSAIDAVPVGNSEWIIVHLRKG-VYR-EKVHIPEN-KP-FIFMRGNGK-----------------------GRT 110 (343)
T ss_pred CCcccHHHHHhhCccCCCceEEEEEcCc-EEE-EEEEECCC-Cc-eEEEEecCC-----------------------CCe
Confidence 5789999999654432211224889999 998 55666321 33 577765531 111
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCC---------CceEEE-EeecceEEeceEEECCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSP---------GNHISV-YGCNDVSISNLKIIAPES 196 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~---------~~~i~~-~~~~nv~i~~~~I~~~~~ 196 (400)
.|.+...- ... ... .......++++++|++|+|+. ...+.+ ...+++.+.+|++....|
T Consensus 111 vI~~~~~~-~~~---------~~s-aTvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QD 179 (343)
T PLN02480 111 SIVWSQSS-SDN---------AAS-ATFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHN 179 (343)
T ss_pred EEEccccc-cCC---------CCc-eEEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccc
Confidence 11111000 000 011 122335688999999999972 123444 357888999999988544
Q ss_pred CCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC-------ce-EEEeccCCCCCCCCEEEEEEEe
Q 041224 197 SPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG-------HG-ISIGSLGANGGTSIVEDVHVRD 268 (400)
Q Consensus 197 ~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~-------~g-i~igs~g~~~~~~~i~ni~v~N 268 (400)
-+-.. ..+-.++||+|...=|-| ++ .....+++|++..- .| |.-.+ + ....-....|.|
T Consensus 180 -----TLy~~-~gR~yf~~C~IeG~VDFI-FG--~g~a~fe~C~i~s~~~~~~~~~G~ITA~~--r--~~~~~~GfvF~~ 246 (343)
T PLN02480 180 -----TLFDY-KGRHYYHSCYIQGSIDFI-FG--RGRSIFHNCEIFVIADRRVKIYGSITAHN--R--ESEDNSGFVFIK 246 (343)
T ss_pred -----eeEeC-CCCEEEEeCEEEeeeeEE-cc--ceeEEEEccEEEEecCCCCCCceEEEcCC--C--CCCCCCEEEEEC
Confidence 33222 246788899998765544 22 35778888888631 13 22211 1 113335688999
Q ss_pred eEEeCCcceEEEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 269 CTFKGTKNGARIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 269 ~~~~~~~~gi~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
|++.+.. ..++. +. +.-..+.|.+..|.+.
T Consensus 247 C~i~g~g-~~yLG----RPW~~ya~vVf~~t~l~~~ 277 (343)
T PLN02480 247 GKVYGIG-EVYLG----RAKGAYSRVIFAKTYLSKT 277 (343)
T ss_pred CEEcccC-ceeee----cCCCCcceEEEEecccCCe
Confidence 9987642 23332 21 3456777777777653
No 38
>PLN02773 pectinesterase
Probab=98.20 E-value=0.00019 Score=68.84 Aligned_cols=211 Identities=14% Similarity=0.196 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeE---EEEccCC-CCccCCCccccEEEeee
Q 041224 48 DSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQG---NIVAPHS-SAWDGHDKKKWLLFSNV 123 (400)
Q Consensus 48 dt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g---~i~~~~~-~~~~~~~~~~~i~~~~~ 123 (400)
|-..||+||+++.......-+|+|.+| +|+- .|.+... |. +++|..++ ++..-.+ ..- +.-.+
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G-~Y~E-~V~I~~~-k~-~itl~G~~~~~TiI~~~~~a~~--------~~~~~- 82 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPG-VYRQ-PVYVPKT-KN-LITLAGLSPEATVLTWNNTATK--------IDHHQ- 82 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCc-eEEE-EEEECcC-Cc-cEEEEeCCCCceEEEccCcccc--------ccccc-
Confidence 478999999655443312357999999 9984 4555321 34 78887763 2221011 000 00000
Q ss_pred eceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEE-EeecceEEeceEEECCCCCC
Q 041224 124 NGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISV-YGCNDVSISNLKIIAPESSP 198 (400)
Q Consensus 124 ~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~-~~~~nv~i~~~~I~~~~~~~ 198 (400)
.. ...|.|+. + ..-.+..++++..++++|+|... -.+.+ ...+.+.+.+|++....|
T Consensus 83 ~~-~~~g~gT~--------------~-SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QD-- 144 (317)
T PLN02773 83 AS-RVIGTGTF--------------G-CGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQD-- 144 (317)
T ss_pred cc-cccCcCcc--------------C-ceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccc--
Confidence 00 00111111 1 12344468899999999999742 12222 236788888888887543
Q ss_pred CCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC-ce-EEEeccCCCCCCCCEEEEEEEeeEEeCCcc
Q 041224 199 NTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG-HG-ISIGSLGANGGTSIVEDVHVRDCTFKGTKN 276 (400)
Q Consensus 199 n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~-~g-i~igs~g~~~~~~~i~ni~v~N~~~~~~~~ 276 (400)
-+-... .+-.++||+|...=|-| ++ .....+++|++..- .| |.--+ . .....-....|.||++.+...
T Consensus 145 ---TL~~~~-gr~yf~~c~IeG~VDFI-FG--~g~a~Fe~c~i~s~~~g~ITA~~--r-~~~~~~~GfvF~~c~it~~~~ 214 (317)
T PLN02773 145 ---TLYLHY-GKQYLRDCYIEGSVDFI-FG--NSTALLEHCHIHCKSAGFITAQS--R-KSSQESTGYVFLRCVITGNGG 214 (317)
T ss_pred ---eeEeCC-CCEEEEeeEEeecccEE-ee--ccEEEEEeeEEEEccCcEEECCC--C-CCCCCCceEEEEccEEecCCC
Confidence 333332 35788888888776655 23 34678888888642 33 22111 0 011223468888888876432
Q ss_pred --eEEEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 277 --GARIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 277 --gi~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
-.++ |+. +.-..+.|.|..|.+.
T Consensus 215 ~~~~yL----GRpW~~~a~vVf~~t~l~~~ 240 (317)
T PLN02773 215 SGYMYL----GRPWGPFGRVVFAYTYMDAC 240 (317)
T ss_pred Ccceee----cCCCCCCceEEEEecccCCe
Confidence 1222 221 3345777777777763
No 39
>PLN02634 probable pectinesterase
Probab=98.19 E-value=0.00061 Score=66.15 Aligned_cols=211 Identities=14% Similarity=0.167 Sum_probs=112.9
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++....+..-+|+|-+| +|+-. |.+... |. +++|..+|.- ...|...+..
T Consensus 66 Gdf~TIQaAIda~P~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~-k~-~ItL~G~g~~-------------~TiIt~~~~a-- 126 (359)
T PLN02634 66 GDFRSVQDAVDSVPKNNTMSVTIKINAG-FYREK-VVVPAT-KP-YITFQGAGRD-------------VTAIEWHDRA-- 126 (359)
T ss_pred CCccCHHHHHhhCcccCCccEEEEEeCc-eEEEE-EEEcCC-CC-eEEEEecCCC-------------ceEEEecccc--
Confidence 4688999999654433213457999999 99754 333211 45 8888877520 0011111100
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC---------ceEEE-EeecceEEeceEEECCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG---------NHISV-YGCNDVSISNLKIIAPES 196 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~---------~~i~~-~~~~nv~i~~~~I~~~~~ 196 (400)
.-.| .++..+-. .+. .-.....+++..+|++|+|... ..+.+ ...+...+.+|.+....|
T Consensus 127 ~~~~-----~~g~~~~T----~~S-aTv~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QD 196 (359)
T PLN02634 127 SDRG-----ANGQQLRT----YQT-ASVTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQD 196 (359)
T ss_pred cccC-----CCCccccc----ccc-eEEEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccc
Confidence 0000 01111110 011 1223356788899999988631 12222 236778888888887543
Q ss_pred CCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC---ce-EEEeccCCCCCCCCEEEEEEEeeEEe
Q 041224 197 SPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG---HG-ISIGSLGANGGTSIVEDVHVRDCTFK 272 (400)
Q Consensus 197 ~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~---~g-i~igs~g~~~~~~~i~ni~v~N~~~~ 272 (400)
-+-.. ..+-.++||+|...=|-| ++ .....++||++..- .| +.- .+. .....-....|.||++.
T Consensus 197 -----TL~~~-~gR~yf~~CyIeG~VDFI-FG--~g~a~Fe~C~I~s~~~~~g~ITA--~~R-~~~~~~~GfvF~~C~vt 264 (359)
T PLN02634 197 -----TLCDD-AGRHYFKECYIEGSIDFI-FG--NGRSMYKDCELHSIASRFGSIAA--HGR-TCPEEKTGFAFVGCRVT 264 (359)
T ss_pred -----eeeeC-CCCEEEEeeEEcccccEE-cC--CceEEEeccEEEEecCCCcEEEe--CCC-CCCCCCcEEEEEcCEEc
Confidence 33222 246778888888766654 22 34667888887632 23 221 111 11233457888888887
Q ss_pred CCcceEEEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 273 GTKNGARIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 273 ~~~~gi~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
+.. -.++ |+. +.-..+.|.+..|.+.
T Consensus 265 g~g-~~yL----GRPW~~yarvVf~~t~l~~~ 291 (359)
T PLN02634 265 GTG-PLYV----GRAMGQYSRIVYAYTYFDAV 291 (359)
T ss_pred CCc-ceEe----cCCCCCcceEEEEecccCCE
Confidence 642 2233 221 3345677777777653
No 40
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.10 E-value=0.00021 Score=65.90 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEecCCCEEEee-----eeeecCCCCCCCeEEEEe
Q 041224 48 DSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLN-----PVSFQGPCKSSSINVQIQ 98 (400)
Q Consensus 48 dt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~-----~l~l~~~~ks~~v~l~~~ 98 (400)
--+.|++|++. ++ .|.+|++.+| +|.-. ||.+ ++ .|+|..+
T Consensus 14 P~~Ti~~A~~~-a~---~g~~i~l~~G-tY~~~~ge~fPi~i----~~-gVtl~G~ 59 (246)
T PF07602_consen 14 PFKTITKALQA-AQ---PGDTIQLAPG-TYSEATGETFPIII----KP-GVTLIGN 59 (246)
T ss_pred CHHHHHHHHHh-CC---CCCEEEECCc-eeccccCCcccEEe----cC-CeEEeec
Confidence 45689999953 43 3789999999 99762 6777 45 7888765
No 41
>smart00656 Amb_all Amb_all domain.
Probab=98.07 E-value=0.00036 Score=62.41 Aligned_cols=135 Identities=23% Similarity=0.287 Sum_probs=90.3
Q ss_pred eEEEeeeCcEEEEceEEeCCC------CceEEEEeecceEEeceEEECCCC----CCCCCee-eec-CcccEEEEeeEEe
Q 041224 152 ALSFGSCNNLVFRGLTHVDSP------GNHISVYGCNDVSISNLKIIAPES----SPNTDGI-DIT-HSSNVQIRDCTIA 219 (400)
Q Consensus 152 ~i~~~~~~nv~i~~v~i~ns~------~~~i~~~~~~nv~i~~~~I~~~~~----~~n~DGi-~i~-~s~nV~I~n~~i~ 219 (400)
.|.+..++||.|++++|++.. ..++.+..+++|.|++|++..... ....||+ ++. .+.+|+|++|.+.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 377777899999999998753 357999999999999999997410 1124554 443 5799999999998
Q ss_pred cCCceEEEcCCce-------eEEEEeeEEcCCce--EEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecCCCeeE
Q 041224 220 TGDDCVAIGTDTS-------NIAVTGVICGPGHG--ISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHA 290 (400)
Q Consensus 220 ~~dD~i~i~s~~~-------ni~i~n~~~~~~~g--i~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i 290 (400)
..+-+.-++++.+ +|++.++.+.+..+ =.+. .+ .+++-|+.+.+.. +..+....+..-.+
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~g---~~hv~NN~~~n~~-~~~~~~~~~~~v~~ 181 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------FG---YVHVYNNYYTGWT-SYAIGGRMGATILS 181 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------CC---EEEEEeeEEeCcc-cEeEecCCCcEEEE
Confidence 8776676766432 69999999875322 2221 11 5888899888764 22333322322344
Q ss_pred EeEEEEe
Q 041224 291 RRISFER 297 (400)
Q Consensus 291 ~nI~f~n 297 (400)
++-.|++
T Consensus 182 E~N~F~~ 188 (190)
T smart00656 182 EGNYFEA 188 (190)
T ss_pred ECeEEEC
Confidence 4444443
No 42
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.03 E-value=5.9e-05 Score=68.05 Aligned_cols=76 Identities=28% Similarity=0.386 Sum_probs=54.2
Q ss_pred CCCCeeeecCcccEEEEeeEEecC---------CceEEEcCCceeEEEEeeEEcCCc-eEEEeccCCCCCCCCEEEEEEE
Q 041224 198 PNTDGIDITHSSNVQIRDCTIATG---------DDCVAIGTDTSNIAVTGVICGPGH-GISIGSLGANGGTSIVEDVHVR 267 (400)
Q Consensus 198 ~n~DGi~i~~s~nV~I~n~~i~~~---------dD~i~i~s~~~ni~i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~v~ 267 (400)
...|+|.+..++||.|++|.+... |..+.++.++.+|+|++|.|...+ +..+|+......... .++++.
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~h 151 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFH 151 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEE
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEE
Confidence 467899999999999999999866 556888888999999999997643 566776422212333 899999
Q ss_pred eeEEeCC
Q 041224 268 DCTFKGT 274 (400)
Q Consensus 268 N~~~~~~ 274 (400)
++.+.+.
T Consensus 152 hN~f~~~ 158 (200)
T PF00544_consen 152 HNYFANT 158 (200)
T ss_dssp S-EEEEE
T ss_pred eEEECch
Confidence 9999764
No 43
>PLN02665 pectinesterase family protein
Probab=98.03 E-value=0.0022 Score=62.70 Aligned_cols=205 Identities=14% Similarity=0.173 Sum_probs=115.9
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++....+.--+|+|.+| +|+- .+.+... |. +++|..++.= ...|...+..
T Consensus 78 Gdf~TIq~AIdaiP~~~~~r~vI~Ik~G-vY~E-kV~Ip~~-kp-~Itl~G~~~~-------------~tiIt~~~~a-- 138 (366)
T PLN02665 78 GDFKTITDAIKSIPAGNTQRVIIDIGPG-EYNE-KITIDRS-KP-FVTLYGSPGA-------------MPTLTFDGTA-- 138 (366)
T ss_pred CCccCHHHHHhhCcccCCceEEEEEeCc-EEEE-EEEecCC-CC-EEEEEecCCC-------------CCEEEECCcc--
Confidence 3578999999654443212346889999 9984 3444211 44 7777765320 1112111100
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC---------ceEEE-EeecceEEeceEEECCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG---------NHISV-YGCNDVSISNLKIIAPES 196 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~---------~~i~~-~~~~nv~i~~~~I~~~~~ 196 (400)
...|+. ...-....++++..+|++|+|... ..+.+ ...+...+.+|++....|
T Consensus 139 --~~~gT~---------------~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QD 201 (366)
T PLN02665 139 --AKYGTV---------------YSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQD 201 (366)
T ss_pred --CCCCCc---------------ceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccc
Confidence 000111 123344568899999999998631 22222 246788899999988544
Q ss_pred CCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcC-Cc---e-EEEeccCCCCCCCCEEEEEEEeeEE
Q 041224 197 SPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGP-GH---G-ISIGSLGANGGTSIVEDVHVRDCTF 271 (400)
Q Consensus 197 ~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~-~~---g-i~igs~g~~~~~~~i~ni~v~N~~~ 271 (400)
-+... ..+-.++||+|...=|-| ++ .....+++|++.. .. | |.-- ++ .....-....|.||++
T Consensus 202 -----TL~~~-~gr~yf~~CyIeG~VDFI-FG--~g~a~fe~C~i~s~~~~~~g~ITA~--~r-~~~~~~~GfvF~~C~i 269 (366)
T PLN02665 202 -----TLCDD-KGRHFFKDCYIEGTVDFI-FG--SGKSLYLNTELHVVGDGGLRVITAQ--AR-NSEAEDSGFSFVHCKV 269 (366)
T ss_pred -----eeEeC-CCCEEEEeeEEeecccee-cc--ccceeeEccEEEEecCCCcEEEEcC--CC-CCCCCCceEEEEeeEE
Confidence 33322 245778999998876655 23 3467888888863 11 2 2111 10 1122345778999999
Q ss_pred eCCcceEEEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 272 KGTKNGARIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 272 ~~~~~gi~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
.+....+++. +. +.-..+.|.+..|.+.
T Consensus 270 tg~~~~~yLG----RpW~~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 270 TGTGTGAYLG----RAWMSRPRVVFAYTEMSSV 298 (366)
T ss_pred ecCCCceeec----CCCCCcceEEEEccccCCe
Confidence 8764234432 21 3345677888877754
No 44
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.88 E-value=0.0022 Score=60.71 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=73.2
Q ss_pred ccEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCC
Q 041224 116 KWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPE 195 (400)
Q Consensus 116 ~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~ 195 (400)
..+... ++++.++| -+..+.|...... ....+.-...+.-.|++..+... .+++.+..+.++.|++.+|....
T Consensus 70 ~~vtv~-aP~~~v~G-l~vr~sg~~lp~m----~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~ 142 (408)
T COG3420 70 SYVTVA-APDVIVEG-LTVRGSGRSLPAM----DAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLA 142 (408)
T ss_pred cEEEEe-CCCceeee-EEEecCCCCcccc----cceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeecc
Confidence 334433 36677776 4444444322211 11233444555566666666544 37788888889999999888744
Q ss_pred C---CCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEee
Q 041224 196 S---SPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGV 239 (400)
Q Consensus 196 ~---~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~ 239 (400)
+ ...++||.++++++..|....|.-+.|||-.+. +++-.|++.
T Consensus 143 ~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gn 188 (408)
T COG3420 143 DLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGN 188 (408)
T ss_pred ccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceeccc
Confidence 3 235778999999999999999988888887775 333334433
No 45
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.86 E-value=0.0014 Score=67.79 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHHhcCC-CCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeec
Q 041224 47 DDSQAFLKAWKSICGSK-SNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNG 125 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~-~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~n 125 (400)
-|-..||+||+++.+.. .+--+|+|.+| +|+-. +.+... |. +++|.++|.= ...|... .+
T Consensus 251 g~f~TIq~Av~a~p~~~~~~r~vI~vk~G-vY~E~-V~i~~~-k~-~v~l~G~g~~-------------~TiIt~~--~~ 311 (553)
T PLN02708 251 CCYKTVQEAVNAAPDNNGDRKFVIRIKEG-VYEET-VRVPLE-KK-NVVFLGDGMG-------------KTVITGS--LN 311 (553)
T ss_pred CCccCHHHHHHhhhhccCCccEEEEEeCc-eEEee-eeecCC-Cc-cEEEEecCCC-------------ceEEEec--Cc
Confidence 45789999996655411 13458999999 99853 333211 44 7888776420 0011100 01
Q ss_pred eEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCC
Q 041224 126 LTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNT 200 (400)
Q Consensus 126 v~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~ 200 (400)
....|.++. ...-.....+++..+|++|+|... ..+.+. .++.+.+.+|.|....|
T Consensus 312 ~~~~g~~T~---------------~saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD---- 372 (553)
T PLN02708 312 VGQPGISTY---------------NTATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD---- 372 (553)
T ss_pred cCCCCcCcc---------------ceEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc----
Confidence 000111110 112333456788899999988643 122222 34566666666666433
Q ss_pred CeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEc
Q 041224 201 DGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICG 242 (400)
Q Consensus 201 DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~ 242 (400)
-+.... .+-.+++|+|...=|-| ++ .....++||.+.
T Consensus 373 -TLy~~~-~rq~y~~C~I~GtVDFI-FG--~a~avfq~c~i~ 409 (553)
T PLN02708 373 -TLYAHS-LRQFYKSCRIQGNVDFI-FG--NSAAVFQDCAIL 409 (553)
T ss_pred -cceeCC-CceEEEeeEEeecCCEE-ec--CceEEEEccEEE
Confidence 222222 33456666666554443 22 235566666553
No 46
>PLN02304 probable pectinesterase
Probab=97.83 E-value=0.0042 Score=60.83 Aligned_cols=208 Identities=13% Similarity=0.184 Sum_probs=111.2
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEee
Q 041224 43 DGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSN 122 (400)
Q Consensus 43 dg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~ 122 (400)
||. -|-..||+||+++.+..+..-+|+|.+| +|+-. |.+... |. +++|..+|.= ...|...+
T Consensus 82 dGs-Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~-K~-~Itl~G~g~~-------------~TiIt~~~ 143 (379)
T PLN02304 82 NGC-CNFTTVQSAVDAVGNFSQKRNVIWINSG-IYYEK-VTVPKT-KP-NITFQGQGFD-------------STAIAWND 143 (379)
T ss_pred CCC-CCccCHHHHHhhCcccCCCcEEEEEeCe-EeEEE-EEECCC-CC-cEEEEecCCC-------------CcEEEccC
Confidence 443 4578999999654443213457999999 99743 444221 45 8888877420 00111111
Q ss_pred eeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC---------ceEEEE-eecceEEeceEEE
Q 041224 123 VNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG---------NHISVY-GCNDVSISNLKII 192 (400)
Q Consensus 123 ~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~---------~~i~~~-~~~nv~i~~~~I~ 192 (400)
.. -.+.|+. ...-.....+++..++++|+|... ..+.+. ..+...+.+|.+.
T Consensus 144 ~a---~~~~gT~---------------~SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~ 205 (379)
T PLN02304 144 TA---KSANGTF---------------YSASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFF 205 (379)
T ss_pred cc---cCCCCcc---------------ceEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEe
Confidence 00 0011111 012233346788899999988631 123222 4677888888888
Q ss_pred CCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC-----------ce-EEEeccCCCCCCCC
Q 041224 193 APESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG-----------HG-ISIGSLGANGGTSI 260 (400)
Q Consensus 193 ~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~-----------~g-i~igs~g~~~~~~~ 260 (400)
...| -+... ..+-.++||+|...=|-| ++ .....+++|.+..- .| |.--+ +.....
T Consensus 206 G~QD-----TLy~~-~gR~Yf~~CyIeG~VDFI-FG--~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~---Rt~~~~ 273 (379)
T PLN02304 206 GAQD-----TLHDD-RGRHYFKDCYIQGSIDFI-FG--DARSLYENCRLISMANPVPPGSKSINGAVTAHG---RTSKDE 273 (379)
T ss_pred cccc-----eeEeC-CCCEEEEeeEEcccccEE-ec--cceEEEEccEEEEecCCcccccccCceEEEecC---CCCCCC
Confidence 7543 23222 245678888888765554 22 24667888877531 12 11111 011233
Q ss_pred EEEEEEEeeEEeCCcceEEEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 261 VEDVHVRDCTFKGTKNGARIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 261 i~ni~v~N~~~~~~~~gi~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
-....|.||++.+.. -.++ |+. ..-..+.|.+..|.+.
T Consensus 274 ~~GfvF~~C~itg~g-~vyL----GRPW~pysrvVf~~t~m~~~ 312 (379)
T PLN02304 274 NTGFSFVNCTIGGTG-RIWL----GRAWRPYSRVVFAYTSMTDI 312 (379)
T ss_pred CceEEEECCEEccCc-ceee----cCCCCCcceEEEEecccCCE
Confidence 456778888886532 2222 221 2345667777776653
No 47
>PLN02671 pectinesterase
Probab=97.81 E-value=0.0039 Score=60.73 Aligned_cols=213 Identities=12% Similarity=0.172 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++....+..-+|+|.+| +|+-. |.+... |. +++|..+|.- .. ...|...+. .
T Consensus 69 Gdf~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~I~~~-k~-~Itl~G~g~~--~~---------~TvIt~~~~--a 131 (359)
T PLN02671 69 GDSLTVQGAVDMVPDYNSQRVKIYILPG-IYREK-VLVPKS-KP-YISFIGNESR--AG---------DTVISWNDK--A 131 (359)
T ss_pred CCccCHHHHHHhchhcCCccEEEEEeCc-eEEEE-EEECCC-CC-eEEEEecCCC--CC---------CEEEEcCCc--c
Confidence 4588999999655443313457999999 99754 444211 45 7788765410 00 001111100 0
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC--------ceEEE-EeecceEEeceEEECCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG--------NHISV-YGCNDVSISNLKIIAPESS 197 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~--------~~i~~-~~~~nv~i~~~~I~~~~~~ 197 (400)
+....+|..|-. ....-.....+++..+|++|+|... ..+.+ ...+.+.+.+|++....|
T Consensus 132 -----~~~~~~g~~~gT-----~~SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QD- 200 (359)
T PLN02671 132 -----SDLDSNGFELGT-----YRTASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQD- 200 (359)
T ss_pred -----cccccCCccccc-----eeeEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEecccc-
Confidence 001111111110 1112344457888899999988721 12222 246788899999988544
Q ss_pred CCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC---ce-EEEeccCCCCCCCCEEEEEEEeeEEeC
Q 041224 198 PNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG---HG-ISIGSLGANGGTSIVEDVHVRDCTFKG 273 (400)
Q Consensus 198 ~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~---~g-i~igs~g~~~~~~~i~ni~v~N~~~~~ 273 (400)
-+-.. ..+-.++||+|...=|-| ++ .....+++|++..- .| |.--+. .....-....|.||++.+
T Consensus 201 ----TLy~~-~gR~yf~~CyIeG~VDFI-FG--~g~A~Fe~C~I~s~~~~~G~ITA~~r---~~~~~~~GfvF~~C~itg 269 (359)
T PLN02671 201 ----TLLDE-TGSHYFYQCYIQGSVDFI-FG--NAKSLYQDCVIQSTAKRSGAIAAHHR---DSPTEDTGFSFVNCVING 269 (359)
T ss_pred ----ccEeC-CCcEEEEecEEEEeccEE-ec--ceeEEEeccEEEEecCCCeEEEeecc---CCCCCCccEEEEccEEcc
Confidence 23222 235688899998876655 23 34688888888632 23 222111 012334578899999876
Q ss_pred CcceEEEE-eecCCCeeEEeEEEEeEEEecC
Q 041224 274 TKNGARIK-TWQGGSGHARRISFERIRLESS 303 (400)
Q Consensus 274 ~~~gi~i~-~~~~~~g~i~nI~f~ni~~~~~ 303 (400)
.. ..++. .| +.-..+.|.|..|.+.
T Consensus 270 ~g-~vyLGRPW----~~yarvVf~~t~m~~~ 295 (359)
T PLN02671 270 TG-KIYLGRAW----GNYSRTVYSNCFIADI 295 (359)
T ss_pred Cc-cEEEeCCC----CCCceEEEEecccCCe
Confidence 42 23332 22 2235777888777764
No 48
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.80 E-value=0.0006 Score=65.27 Aligned_cols=210 Identities=16% Similarity=0.261 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++.......-+|+|.+| +|+-. |.+... |. +++|..++. ...
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E~-V~i~~~-k~-~v~l~G~~~-----------------------~~t 62 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPG-TYREK-VTIPRS-KP-NVTLIGEGR-----------------------DKT 62 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SE-EEE---EEE-ST-ST-TEEEEES-T-----------------------TTE
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCe-eEccc-cEeccc-cc-eEEEEecCC-----------------------Cce
Confidence 4678899999654443212357999999 99753 444321 34 778776531 111
Q ss_pred EEecCe-eEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCc------eEEEEeecceEEeceEEECCCCCCC
Q 041224 127 TVNGNG-KIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGN------HISVYGCNDVSISNLKIIAPESSPN 199 (400)
Q Consensus 127 ~I~G~G-~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~------~i~~~~~~nv~i~~~~I~~~~~~~n 199 (400)
.|.+.. ..++. .-+ +...+ ....+++.+++++|+|.... .+.. ..+...+.+|.+....
T Consensus 63 iI~~~~~~~~~~--~t~------~saT~-~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~Q---- 128 (298)
T PF01095_consen 63 IITGNDNAADGG--GTF------RSATF-SVNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQ---- 128 (298)
T ss_dssp EEEE---TTTB---HCG------GC-SE-EE-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-ST----
T ss_pred EEEEeccccccc--ccc------ccccc-cccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEcccc----
Confidence 111100 00000 000 11123 33578999999999986421 2333 4577888888888754
Q ss_pred CCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcC-----CceEEEeccCCCCCCCCEEEEEEEeeEEeCC
Q 041224 200 TDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGP-----GHGISIGSLGANGGTSIVEDVHVRDCTFKGT 274 (400)
Q Consensus 200 ~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~-----~~gi~igs~g~~~~~~~i~ni~v~N~~~~~~ 274 (400)
|-+.... .+..++||+|...-|-|-= . ....+++|.+.. +.+-.|-..+. .....-....|.||++...
T Consensus 129 -DTL~~~~-~r~y~~~c~IeG~vDFIfG-~--~~a~f~~c~i~~~~~~~~~~~~ItA~~r-~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 129 -DTLYANG-GRQYFKNCYIEGNVDFIFG-N--GTAVFENCTIHSRRPGGGQGGYITAQGR-TSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp -T-EEE-S-SEEEEES-EEEESEEEEEE-S--SEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEEES
T ss_pred -ceeeecc-ceeEEEeeEEEecCcEEEC-C--eeEEeeeeEEEEeccccccceeEEeCCc-cccCCCeEEEEEEeEEecC
Confidence 4444433 4677888888887666533 2 356788888752 11112211111 1233456788888888864
Q ss_pred cc--------eEEEEeecCCCeeEEeEEEEeEEEecCCcc
Q 041224 275 KN--------GARIKTWQGGSGHARRISFERIRLESSDNP 306 (400)
Q Consensus 275 ~~--------gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~ 306 (400)
.. ..++.-.+ +.-..+.|.|..|.+.-.|
T Consensus 203 ~~~~~~~~~~~~yLGRpW---~~~s~vvf~~t~m~~~I~p 239 (298)
T PF01095_consen 203 SGVSPSYSDGSVYLGRPW---GPYSRVVFINTYMDDHINP 239 (298)
T ss_dssp TTTCGGCCCSTEEEE--S---SEETEEEEES-EE-TTEET
T ss_pred ccccccccceeEEecCcc---cceeeEEEEccccCCeeec
Confidence 21 22332111 2335678888888875433
No 49
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.80 E-value=0.0032 Score=62.39 Aligned_cols=237 Identities=14% Similarity=0.235 Sum_probs=120.4
Q ss_pred cCCCCcchHHHHHHHHHHHhcCC-CCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeE-----E-EEccCC-----CC
Q 041224 41 VGDGETDDSQAFLKAWKSICGSK-SNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQG-----N-IVAPHS-----SA 108 (400)
Q Consensus 41 ~gdg~tddt~aiq~Ai~~a~~~~-~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g-----~-i~~~~~-----~~ 108 (400)
.+||. -|-..||+||+++.... ..--+|+|.+| +|+-. |.+... |. +++|.++| + |....+ ..
T Consensus 87 a~dGs-Gdf~TIQaAIdAa~~~~~~~r~~I~Ik~G-vY~Ek-V~Ip~~-kp-~ItL~G~G~~~~~TvIt~~~~~~~~~~~ 161 (422)
T PRK10531 87 AGTQG-VTHTTVQAAVDAAIAKRTNKRQYIAVMPG-TYQGT-VYVPAA-AP-PITLYGTGEKPIDVKIGLALDGEMSPAD 161 (422)
T ss_pred CCCCC-CCccCHHHHHhhccccCCCceEEEEEeCc-eeEEE-EEeCCC-Cc-eEEEEecCCCCCceEEEecCcccccccc
Confidence 34553 36889999996544321 12357899999 99854 444321 45 89998764 2 222210 11
Q ss_pred ccC---------CCccccEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCc-----
Q 041224 109 WDG---------HDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGN----- 174 (400)
Q Consensus 109 ~~~---------~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~----- 174 (400)
|.. .....|+.+..+.+-.-.+.|+. ...-.....+++..++++|+|....
T Consensus 162 ~~~~~~~~g~~~~~~p~~y~~d~~~~~~~~~~gT~---------------~SATv~v~ad~F~a~NLTf~Ntag~~~~~~ 226 (422)
T PRK10531 162 WRANVNPRGKYMPGKPAWYMYDSCQSKRAATIGTL---------------CSAVFWSQNNGLQLQNLTIENTLGDSVDAG 226 (422)
T ss_pred ccccccccccccccccccccccccccccCCCcCce---------------eeEEEEEECCCEEEEeeEEEeCCCCCCCCC
Confidence 110 00112333222111000000111 1134445788999999999987431
Q ss_pred ---eEEE-EeecceEEeceEEECCCCCCCCC------eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC
Q 041224 175 ---HISV-YGCNDVSISNLKIIAPESSPNTD------GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG 244 (400)
Q Consensus 175 ---~i~~-~~~~nv~i~~~~I~~~~~~~n~D------Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~ 244 (400)
.+.+ ...+.+.+.+|+|....|..-.+ +.......+..+++|+|...=|-| ++ .-...++||++..-
T Consensus 227 ~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFI-FG--~g~AvFenC~I~s~ 303 (422)
T PRK10531 227 NHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFV-FG--RGAVVFDNTEFRVV 303 (422)
T ss_pred cceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeecccEE-cc--CceEEEEcCEEEEe
Confidence 2222 24677888888888755421111 111112235778888888766654 22 34677888877531
Q ss_pred ------ceEEEeccCCCCCCCCEEEEEEEeeEEeCCcce-EEEE-eecCC---------CeeEEeEEEEeEEEecC
Q 041224 245 ------HGISIGSLGANGGTSIVEDVHVRDCTFKGTKNG-ARIK-TWQGG---------SGHARRISFERIRLESS 303 (400)
Q Consensus 245 ------~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~g-i~i~-~~~~~---------~g~i~nI~f~ni~~~~~ 303 (400)
.|.-.-. . .....-....|.||++.+...+ .++. .|... ......+.|.+..|.+.
T Consensus 304 ~~~~~~~g~ITA~-~--t~~~~~~GfvF~nCrit~~g~~~~yLGRpW~~~s~~~~y~~~~~~~arvV~~~s~i~~~ 376 (422)
T PRK10531 304 NSRTQQEAYVFAP-A--TLPNIYYGFLAINSRFNASGDGVAQLGRAWDVDAGLSAYVNGANTNGQVVIRDSAINEG 376 (422)
T ss_pred cCCCCCceEEEec-C--CCCCCCCEEEEECCEEecCCCCCeeccCCCcccccccccccccCCcceEEEEeCcccce
Confidence 1211110 0 0123345688888888764321 2222 12111 01234677777777654
No 50
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.78 E-value=0.0043 Score=63.32 Aligned_cols=206 Identities=14% Similarity=0.219 Sum_probs=114.6
Q ss_pred chHHHHHHHHHHHhc-CCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeec
Q 041224 47 DDSQAFLKAWKSICG-SKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNG 125 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~-~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~n 125 (400)
-|-..||+||+++.. .....-+|+|.+| +|+-. +.+... |. +++|.++|. ..
T Consensus 235 G~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-nItl~G~g~-----------------------~~ 287 (529)
T PLN02170 235 GTHKTIGEALLSTSLESGGGRTVIYLKAG-TYHEN-LNIPTK-QK-NVMLVGDGK-----------------------GK 287 (529)
T ss_pred CchhhHHHHHHhcccccCCceEEEEEeCC-eeEEE-EecCCC-Cc-eEEEEEcCC-----------------------CC
Confidence 457899999964432 2213467999999 99743 444221 45 888877642 11
Q ss_pred eEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEE-EeecceEEeceEEECCCCCCCC
Q 041224 126 LTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISV-YGCNDVSISNLKIIAPESSPNT 200 (400)
Q Consensus 126 v~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~-~~~~nv~i~~~~I~~~~~~~n~ 200 (400)
..|+|... .+.+ |. .-...-.....+++..+|++|+|... ..+.+ ...+...+.+|++....|
T Consensus 288 TiIt~~~~-~~~g---~~----T~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQD---- 355 (529)
T PLN02170 288 TVIVGSRS-NRGG---WT----TYQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQD---- 355 (529)
T ss_pred eEEEeCCc-CCCC---Cc----cccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCC----
Confidence 11111000 0000 00 01123344567889999999998742 22332 246788889999988544
Q ss_pred CeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC-----ceEEEeccCCCCCCCCEEEEEEEeeEEeCCc
Q 041224 201 DGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG-----HGISIGSLGANGGTSIVEDVHVRDCTFKGTK 275 (400)
Q Consensus 201 DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~ 275 (400)
-+.... .+-.+++|+|...=|-| ++ .....++||.+..- .| .|=..++ .+...-..+.|.||++.+..
T Consensus 356 -TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avFq~C~I~~~~~~~~~g-~ITAq~R-~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 356 -SLYTHS-KRQFYRETDITGTVDFI-FG--NSAVVFQSCNIAARKPSGDRN-YVTAQGR-SDPNQNTGISIHNCRITAES 428 (529)
T ss_pred -cceeCC-CCEEEEeeEEcccccee-cc--cceEEEeccEEEEecCCCCce-EEEecCC-CCCCCCceEEEEeeEEecCC
Confidence 333332 45678999998766654 22 35678888887531 12 1211111 12233467889999998753
Q ss_pred ceEEEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 276 NGARIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 276 ~gi~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
-.+++ +. ..-..+.|.+..|.+.
T Consensus 429 -~~yLG----RPW~~ysrvVf~~t~l~~~ 452 (529)
T PLN02170 429 -MTYLG----RPWKEYSRTVVMQSFIDGS 452 (529)
T ss_pred -ceeee----CCCCCCceEEEEecccCCe
Confidence 22332 21 2335667777777654
No 51
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.76 E-value=0.0027 Score=65.79 Aligned_cols=211 Identities=14% Similarity=0.160 Sum_probs=118.5
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++.......-+|+|.+| +|+- .+.+... |. +++|.++|.= ...|... .+.
T Consensus 268 g~f~tI~~Av~a~p~~~~~~~vI~ik~G-vY~E-~V~i~~~-k~-~i~~~G~g~~-------------~tiIt~~--~~~ 328 (565)
T PLN02468 268 GKYKTISEALKDVPEKSEKRTIIYVKKG-VYFE-NVRVEKK-KW-NVVMVGDGMS-------------KTIVSGS--LNF 328 (565)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCC-ceEE-EEEecCC-CC-eEEEEecCCC-------------CCEEEeC--Ccc
Confidence 3578999999655443323568999999 9975 3444322 34 7888776520 0011100 110
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEE-EeecceEEeceEEECCCCCCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISV-YGCNDVSISNLKIIAPESSPNTD 201 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~-~~~~nv~i~~~~I~~~~~~~n~D 201 (400)
.||.. . + + ..-.....+++..++++|+|... ..+.+ ..++...+.+|+|....|.
T Consensus 329 -------~dg~~-t-~------~-saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDT---- 388 (565)
T PLN02468 329 -------VDGTP-T-F------S-TATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDT---- 388 (565)
T ss_pred -------CCCCC-c-c------c-eeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccch----
Confidence 01110 0 1 1 12233356789999999998643 22333 2567889999999986543
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ce-EEEeccCCCCCCCCEEEEEEEeeEEeCC
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HG-ISIGSLGANGGTSIVEDVHVRDCTFKGT 274 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~v~N~~~~~~ 274 (400)
+.... .+-.+++|+|...=|-| + |...+.++||.+..- .+ |.- .+. .+...-..+.|.||++...
T Consensus 389 -Ly~~~-~rq~y~~C~I~GtvDFI-F--G~a~avfq~c~i~~~~~~~~~~~~iTA--~~r-~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 389 -LYAHA-QRQFYRECNIYGTVDFI-F--GNSAVVFQNCNILPRRPMKGQQNTITA--QGR-TDPNQNTGISIQNCTILPL 460 (565)
T ss_pred -hccCC-CceEEEeeEEeccccee-e--ccceEEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCceEEEEccEEecC
Confidence 33333 45678999998876654 2 235788999988521 12 222 111 1234456799999999875
Q ss_pred cceEEEEeecCCC-eeEEeEEEEeEEEecCC
Q 041224 275 KNGARIKTWQGGS-GHARRISFERIRLESSD 304 (400)
Q Consensus 275 ~~gi~i~~~~~~~-g~i~nI~f~ni~~~~~~ 304 (400)
...-..+.+=|+. ..-..+.|.+..|.+.=
T Consensus 461 ~~~~~~~~yLGRPW~~~sr~v~~~s~~~~~I 491 (565)
T PLN02468 461 GDLTSVKTFLGRPWKNYSTTVIMHSMMGSLI 491 (565)
T ss_pred CCccccceeeecCCCCCceEEEEecccCCeE
Confidence 3211122222222 33345677777776643
No 52
>PLN02197 pectinesterase
Probab=97.76 E-value=0.0026 Score=65.98 Aligned_cols=215 Identities=10% Similarity=0.147 Sum_probs=119.1
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++....+.--+|+|.+| +|+-. +.+... |. +++|.++|.= ...|... .++
T Consensus 285 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-ni~l~G~g~~-------------~TiIt~~--~~~ 345 (588)
T PLN02197 285 GQFKTISQAVMACPDKNPGRCIIHIKAG-IYNEQ-VTIPKK-KN-NIFMFGDGAR-------------KTVISYN--RSV 345 (588)
T ss_pred CCcCCHHHHHHhccccCCceEEEEEeCc-eEEEE-EEccCC-Cc-eEEEEEcCCC-------------CeEEEec--ccc
Confidence 4578999999655443322346999999 99754 444321 44 7888777520 0111111 111
Q ss_pred EE-ecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCC
Q 041224 127 TV-NGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNT 200 (400)
Q Consensus 127 ~I-~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~ 200 (400)
.. .|.++. + ..-.....+++..++++|+|... ..+.+. .++...+.+|.|....|
T Consensus 346 ~~~~g~~T~--------------~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQD---- 406 (588)
T PLN02197 346 KLSPGTTTS--------------L-SGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQD---- 406 (588)
T ss_pred ccCCCCccc--------------c-eeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCc----
Confidence 00 111110 1 12333467889999999999643 233333 46788999999998644
Q ss_pred CeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC---ce--EEEeccCCCCCCCCEEEEEEEeeEEeCCc
Q 041224 201 DGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG---HG--ISIGSLGANGGTSIVEDVHVRDCTFKGTK 275 (400)
Q Consensus 201 DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~i~ni~v~N~~~~~~~ 275 (400)
-+.... .+-.+++|+|...=|-| ++ .....++||.+... .| -.|-..++......-..+.|.||++.+..
T Consensus 407 -TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 407 -TLYVNN-GRQFYRNIVVSGTVDFI-FG--KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred -ceEecC-CCEEEEeeEEEeccccc-cc--ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCC
Confidence 344333 45688999998866654 32 34588889987521 11 12211111100233467899999998753
Q ss_pred ce----EEEEeecCCC-eeEEeEEEEeEEEecCC
Q 041224 276 NG----ARIKTWQGGS-GHARRISFERIRLESSD 304 (400)
Q Consensus 276 ~g----i~i~~~~~~~-g~i~nI~f~ni~~~~~~ 304 (400)
.- ...+.+=|+. ..-..+.|.+..|.+.=
T Consensus 482 ~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~~I 515 (588)
T PLN02197 482 KLTAERLTVASYLGRPWKKFSTTVIISTEIGDLI 515 (588)
T ss_pred cccccccccccccCCCCCCCceEEEEecccCCee
Confidence 21 1112222322 34566777777776543
No 53
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.73 E-value=0.0015 Score=59.47 Aligned_cols=122 Identities=28% Similarity=0.423 Sum_probs=71.1
Q ss_pred EEEceEEeCCC------CceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEE
Q 041224 162 VFRGLTHVDSP------GNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIA 235 (400)
Q Consensus 162 ~i~~v~i~ns~------~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~ 235 (400)
.|++++|.... ..++++..++++.|++|++.+. +.+|+.+..+....+.+..... ++.+..+..++.
T Consensus 95 ~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 167 (225)
T PF12708_consen 95 QIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNGSNNVI 167 (225)
T ss_dssp EEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESCEEEEE
T ss_pred EEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccceeEEE
Confidence 37777765432 1346677777777777777763 3456666544343333332221 233333345667
Q ss_pred EEeeEEcCC-ceEEEeccCCCCCCCCEEEEEEEeeEEeC-CcceEEEEeecCCCeeEEeEEEEeEEEecCCccE
Q 041224 236 VTGVICGPG-HGISIGSLGANGGTSIVEDVHVRDCTFKG-TKNGARIKTWQGGSGHARRISFERIRLESSDNPI 307 (400)
Q Consensus 236 i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~v~N~~~~~-~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~i 307 (400)
+.++.+..+ .|+..++ ++++++||.+.+ ...|+.+... .+++++|++++++..+|
T Consensus 168 ~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 168 VNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSSEEE
T ss_pred ECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCccCc
Confidence 777776654 3533221 688899999887 6678877653 23677777777766554
No 54
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.73 E-value=0.0048 Score=64.24 Aligned_cols=213 Identities=14% Similarity=0.200 Sum_probs=120.8
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++.......-+|+|.+| +|+-..+.+... |. +++|.++|. ...
T Consensus 282 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~~-k~-ni~l~G~g~-----------------------~~T 335 (587)
T PLN02484 282 GTFKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGRK-KT-NLMFIGDGK-----------------------GKT 335 (587)
T ss_pred CCcccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECCC-Cc-eEEEEecCC-----------------------CCe
Confidence 3578899999655443323467999999 998754555422 44 788877642 111
Q ss_pred EEecCe-eEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCC
Q 041224 127 TVNGNG-KIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNT 200 (400)
Q Consensus 127 ~I~G~G-~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~ 200 (400)
.|+|.- ..++.+ .| ...-.....+++..++++|+|... ..+.+. ..+...+.+|.+....|.
T Consensus 336 iIt~~~~~~~~~~-t~--------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDT--- 403 (587)
T PLN02484 336 VITGGKSIFDNLT-TF--------HTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDT--- 403 (587)
T ss_pred EEecCCcccCCCc-cc--------ceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcc---
Confidence 111100 000000 01 012334457788999999988643 233332 467889999999986542
Q ss_pred CeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ce-EEEeccCCCCCCCCEEEEEEEeeEEeC
Q 041224 201 DGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HG-ISIGSLGANGGTSIVEDVHVRDCTFKG 273 (400)
Q Consensus 201 DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~v~N~~~~~ 273 (400)
+.... .+-.+++|+|...=|-| + |.....++||.+..- .| |.-- ++ .+...-..+.|.||++.+
T Consensus 404 --Ly~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~~~~~~~~~~~ITAq--~r-~~~~~~~G~vf~~c~i~~ 474 (587)
T PLN02484 404 --LYVHS-NRQFFRECDIYGTVDFI-F--GNAAVVLQNCSIYARKPMAQQKNTITAQ--NR-KDPNQNTGISIHACRILA 474 (587)
T ss_pred --cccCC-CcEEEEecEEEecccee-c--ccceeEEeccEEEEecCCCCCceEEEec--CC-CCCCCCcEEEEEeeEEec
Confidence 33222 45688999998866654 2 345788899988531 12 2211 11 122345689999999986
Q ss_pred Ccce----EEEEeecCCC-eeEEeEEEEeEEEecCCcc
Q 041224 274 TKNG----ARIKTWQGGS-GHARRISFERIRLESSDNP 306 (400)
Q Consensus 274 ~~~g----i~i~~~~~~~-g~i~nI~f~ni~~~~~~~~ 306 (400)
...- -..+.+=|+. ..-..+.|.+..|.+.=.|
T Consensus 475 ~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~I~p 512 (587)
T PLN02484 475 ASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDHIHP 512 (587)
T ss_pred CCccccccCccceeccCCCCCCceEEEEecccCCeEcc
Confidence 4320 0111222322 3446677777777764333
No 55
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.72 E-value=0.0041 Score=64.75 Aligned_cols=210 Identities=11% Similarity=0.164 Sum_probs=119.3
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|.++|.= ...|.... +.
T Consensus 295 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~G~g~~-------------~TiIt~~~--~~ 355 (596)
T PLN02745 295 GNFTTISDALAAMPAKYEGRYVIYVKQG-IYDET-VTVDKK-MV-NVTMYGDGSQ-------------KTIVTGNK--NF 355 (596)
T ss_pred CCcccHHHHHHhccccCCceEEEEEeCC-eeEEE-EEEcCC-Cc-eEEEEecCCC-------------ceEEEECC--cc
Confidence 3578999999654443223457999999 99854 444322 44 7888776520 00111110 00
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEE-EeecceEEeceEEECCCCCCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISV-YGCNDVSISNLKIIAPESSPNTD 201 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~-~~~~nv~i~~~~I~~~~~~~n~D 201 (400)
..|.++. + ..-.....+++..++++|+|... ..+.+ ..++...+.+|.|....|.
T Consensus 356 -~~g~~T~--------------~-saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDT---- 415 (596)
T PLN02745 356 -ADGVRTF--------------R-TATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDT---- 415 (596)
T ss_pred -cCCCcce--------------e-eEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccc----
Confidence 0111111 1 12333467889999999998643 22333 2468899999999986543
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ce-EEEeccCCCCCCCCEEEEEEEeeEEeCC
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HG-ISIGSLGANGGTSIVEDVHVRDCTFKGT 274 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~v~N~~~~~~ 274 (400)
+... ..+-.+++|+|...=|-| ++ .....++||.+..- .+ |.-- +. .+...-..+.|.||++.+.
T Consensus 416 -Ly~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 416 -LYAQ-THRQFYRSCVITGTIDFI-FG--DAAAIFQNCLIFVRKPLPNQQNTVTAQ--GR-VDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred -cccC-CCcEEEEeeEEEeeccEE-ec--ceeEEEEecEEEEecCCCCCCceEEec--CC-CCCCCCceEEEEeeEEecC
Confidence 3322 245789999999876644 33 36788999988531 12 2211 11 1223456899999999875
Q ss_pred cceE----EEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 275 KNGA----RIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 275 ~~gi----~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
.... ..+.+-|+. ..-..+.|.+..|.+.
T Consensus 488 ~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~~ 521 (596)
T PLN02745 488 EDLKPVKTEVKSYLGRPWKEFSRTIVMESTIEDV 521 (596)
T ss_pred ccccccccccceeccCCCCCCccEEEEecccCCe
Confidence 3211 112222322 3345677777777654
No 56
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.71 E-value=0.0049 Score=63.03 Aligned_cols=215 Identities=13% Similarity=0.149 Sum_probs=119.5
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEee
Q 041224 43 DGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSN 122 (400)
Q Consensus 43 dg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~ 122 (400)
||. -|-..||+||+++....+..-+|+|.+| +|+-. +.+... |. +++|.++|.= ...|....
T Consensus 213 dGs-G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~G~g~~-------------~TiIt~~~ 274 (520)
T PLN02201 213 DGT-GNFTTIMDAVLAAPDYSTKRYVIYIKKG-VYLEN-VEIKKK-KW-NIMMVGDGID-------------ATVITGNR 274 (520)
T ss_pred CCC-CCccCHHHHHHhchhcCCCcEEEEEeCc-eeEEE-EEecCC-Cc-eEEEEecCCC-------------CcEEEeCC
Confidence 443 4688999999655443323468999999 99754 444321 34 7888776420 00111110
Q ss_pred eeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCC
Q 041224 123 VNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESS 197 (400)
Q Consensus 123 ~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~ 197 (400)
+. ..|.++. + ..-.....+++..+|++|+|... ..+.+. ..+...+.+|.+....
T Consensus 275 --~~-~~g~~T~--------------~-SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q-- 334 (520)
T PLN02201 275 --SF-IDGWTTF--------------R-SATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ-- 334 (520)
T ss_pred --cc-CCCCccc--------------c-eEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC--
Confidence 00 0111111 1 12334457889999999998743 233332 4678889999998854
Q ss_pred CCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ce-EEEeccCCCCCCCCEEEEEEEeeE
Q 041224 198 PNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HG-ISIGSLGANGGTSIVEDVHVRDCT 270 (400)
Q Consensus 198 ~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~v~N~~ 270 (400)
|-+.... .+-.+++|+|...=|-| ++ .....++||.+..- .| |.-- ++ .+...-..+.|.||+
T Consensus 335 ---DTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~Gfvf~~C~ 404 (520)
T PLN02201 335 ---DTLYTHT-MRQFYRECRITGTVDFI-FG--DATAVFQNCQILAKKGLPNQKNTITAQ--GR-KDPNQPTGFSIQFSN 404 (520)
T ss_pred ---CeeEeCC-CCEEEEeeEEeecccEE-ec--CceEEEEccEEEEecCCCCCCceEEec--CC-CCCCCCcEEEEEeeE
Confidence 3344333 45678899998876655 32 35688889888631 12 2221 11 122344578899999
Q ss_pred EeCCcceE----EEEeecCCC-eeEEeEEEEeEEEecCCc
Q 041224 271 FKGTKNGA----RIKTWQGGS-GHARRISFERIRLESSDN 305 (400)
Q Consensus 271 ~~~~~~gi----~i~~~~~~~-g~i~nI~f~ni~~~~~~~ 305 (400)
+.+..... ..+.+=|+. +.-..+.|.+..|.+.=.
T Consensus 405 it~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~l~~~I~ 444 (520)
T PLN02201 405 ISADTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSDAIR 444 (520)
T ss_pred EecCccccccccccceEeecCCCCCceEEEEecCcCCeEc
Confidence 87643210 001111222 344667777777776433
No 57
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.69 E-value=0.0055 Score=62.70 Aligned_cols=211 Identities=10% Similarity=0.118 Sum_probs=117.5
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++......--+|+|.+| +|.- .+.+... |. +++|.++|.= ...|.... +.
T Consensus 228 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~-~itl~G~g~~-------------~TiIt~~~--~~ 288 (530)
T PLN02933 228 GNFTTINEAVSAAPNSSETRFIIYIKGG-EYFE-NVELPKK-KT-MIMFIGDGIG-------------KTVIKANR--SR 288 (530)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEcCc-eEEE-EEEecCC-Cc-eEEEEEcCCC-------------CcEEEeCC--cc
Confidence 4578999999655443323457999999 9984 4555322 44 7887776420 00111110 00
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNTD 201 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~D 201 (400)
..|.++. + ..-.....+++..++++|+|... ..+.+. ..+...+.+|.+....|
T Consensus 289 -~dg~~T~--------------~-SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD----- 347 (530)
T PLN02933 289 -IDGWSTF--------------Q-TATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQD----- 347 (530)
T ss_pred -CCCCccc--------------c-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEeccc-----
Confidence 0111110 1 12334467889999999998643 233333 46788999999988654
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ce-EEEeccCCCCCCCCEEEEEEEeeEEeCC
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HG-ISIGSLGANGGTSIVEDVHVRDCTFKGT 274 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~v~N~~~~~~ 274 (400)
-+.... .+-.+++|+|...=|-| ++ .....++||.+..- .+ +.- .+. .....-..+.|.||++...
T Consensus 348 TLy~~~-~Rqyy~~C~IeGtVDFI-FG--~a~avFq~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 348 TLYVHS-AKQFYRECDIYGTIDFI-FG--NAAVVFQNCSLYARKPNPNHKIAFTA--QSR-NQSDQPTGISIISSRILAA 420 (530)
T ss_pred ccccCC-CceEEEeeEEeccccee-cc--CceEEEeccEEEEeccCCCCceEEEe--cCC-CCCCCCceEEEEeeEEecC
Confidence 233322 35688999998866654 32 35678888887521 12 221 111 1223345789999999874
Q ss_pred cceEE----EEeecCCC-eeEEeEEEEeEEEecCC
Q 041224 275 KNGAR----IKTWQGGS-GHARRISFERIRLESSD 304 (400)
Q Consensus 275 ~~gi~----i~~~~~~~-g~i~nI~f~ni~~~~~~ 304 (400)
..... .+.+=|+. ..-..+.|.+..|.+.=
T Consensus 421 ~~~~~~~~~~~~yLGRPW~~ysrvVf~~s~l~~~I 455 (530)
T PLN02933 421 PDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDLI 455 (530)
T ss_pred CcccccccccceEeccCCCCCceEEEEecccCCee
Confidence 32100 11111222 33457777777777643
No 58
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.0079 Score=56.30 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=63.5
Q ss_pred eecceEEeceEEECCC---CCCCCCee-eec-CcccEEEEeeEEecCCceEEEcCC--------ceeEEEEeeEEcCC--
Q 041224 180 GCNDVSISNLKIIAPE---SSPNTDGI-DIT-HSSNVQIRDCTIATGDDCVAIGTD--------TSNIAVTGVICGPG-- 244 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~---~~~n~DGi-~i~-~s~nV~I~n~~i~~~dD~i~i~s~--------~~ni~i~n~~~~~~-- 244 (400)
..+|+.|++|++.... .....||. |+. .+..|+|++|++...+-..-+++. ..+|++.+|.|.+.
T Consensus 152 ~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q 231 (345)
T COG3866 152 DGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ 231 (345)
T ss_pred CCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccc
Confidence 3344555555554421 11234553 553 567899999999988776666552 34699999998763
Q ss_pred c--eEEEeccCCCCCCCCEEEEEEEeeEEeCCc-ceEEEEeecCCCeeEEeEEEEeEEEecCCccE
Q 041224 245 H--GISIGSLGANGGTSIVEDVHVRDCTFKGTK-NGARIKTWQGGSGHARRISFERIRLESSDNPI 307 (400)
Q Consensus 245 ~--gi~igs~g~~~~~~~i~ni~v~N~~~~~~~-~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~i 307 (400)
. .+++|. +++.|+.+++.. .|+.+.. |.-.-|..|+.-+++.+.++
T Consensus 232 R~PriRfG~------------vHvyNNYy~~~~~~g~a~~i-----G~~AkiyvE~NyF~~~~~~~ 280 (345)
T COG3866 232 RGPRIRFGM------------VHVYNNYYEGNPKFGVAITI-----GTSAKIYVENNYFENGSEGL 280 (345)
T ss_pred cCCceEeeE------------EEEeccccccCcccceEEee-----ccceEEEEecceeccCCCCc
Confidence 2 377765 677777777543 3443332 22223444555555545443
No 59
>PLN02432 putative pectinesterase
Probab=97.67 E-value=0.011 Score=56.12 Aligned_cols=200 Identities=16% Similarity=0.181 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeeceE
Q 041224 48 DSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLT 127 (400)
Q Consensus 48 dt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv~ 127 (400)
|-..||+||+++....+..-+|+|.+| +|.-. |.+... |. +++|..++. ++..
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E~-V~ip~~-k~-~itl~G~~~-----------------------~~Tv 74 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPG-IYREK-VVVPAD-KP-FITLSGTQA-----------------------SNTI 74 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eeEEE-EEEecc-Cc-eEEEEEcCC-----------------------CCeE
Confidence 588999999655443312357999999 99543 444211 44 777766531 1111
Q ss_pred EecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC---ceEEE-EeecceEEeceEEECCCCCCCCCee
Q 041224 128 VNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG---NHISV-YGCNDVSISNLKIIAPESSPNTDGI 203 (400)
Q Consensus 128 I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~---~~i~~-~~~~nv~i~~~~I~~~~~~~n~DGi 203 (400)
|... ++.+ . .+. .-.....+++..+|++|+|... -.+.+ ...+...+.+|.+....| -+
T Consensus 75 I~~~---~~~~-~-------~~s-aT~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QD-----TL 137 (293)
T PLN02432 75 ITWN---DGGD-I-------FES-PTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQD-----TL 137 (293)
T ss_pred EEec---CCcc-c-------ccc-eEEEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccc-----ee
Confidence 1110 0000 0 011 1223456789999999998632 22222 245788888888887543 33
Q ss_pred eecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcC---Cce-EEEeccCCCCCCCCEEEEEEEeeEEeCCcceEE
Q 041224 204 DITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGP---GHG-ISIGSLGANGGTSIVEDVHVRDCTFKGTKNGAR 279 (400)
Q Consensus 204 ~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~---~~g-i~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~ 279 (400)
-... .+-.++||+|...=|-| ++ .....+++|.+.. ..| +.--+. .....-....|.||++.+.. ..+
T Consensus 138 y~~~-gr~yf~~c~I~G~VDFI-FG--~g~a~Fe~c~i~s~~~~~g~itA~~r---~~~~~~~Gfvf~~c~itg~g-~~y 209 (293)
T PLN02432 138 LDDT-GRHYYRNCYIEGATDFI-CG--NAASLFEKCHLHSLSPNNGAITAQQR---TSASENTGFTFLGCKLTGAG-TTY 209 (293)
T ss_pred EECC-CCEEEEeCEEEecccEE-ec--CceEEEEeeEEEEecCCCCeEEecCC---CCCCCCceEEEEeeEEcccc-hhh
Confidence 3222 45688888888776655 23 3467888888752 123 222110 01223346888888887532 122
Q ss_pred EEeecCCC-eeEEeEEEEeEEEecC
Q 041224 280 IKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 280 i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
+ |+. +.-..+.|.|..|.+.
T Consensus 210 L----GRpW~~~srvvf~~t~l~~~ 230 (293)
T PLN02432 210 L----GRPWGPYSRVVFALSYMSSV 230 (293)
T ss_pred c----cCCCCCccEEEEEecccCCe
Confidence 2 221 3345777777777653
No 60
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.65 E-value=0.0056 Score=63.12 Aligned_cols=211 Identities=16% Similarity=0.212 Sum_probs=116.3
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++.......-+|+|.+| +|.- .+.+... |. +++|.++|. ...
T Consensus 240 G~f~TIq~Ai~a~p~~~~~r~vI~Ik~G-vY~E-~V~i~~~-k~-~i~l~G~g~-----------------------~~T 292 (541)
T PLN02416 240 GNFSTITDAINFAPNNSNDRIIIYVREG-VYEE-NVEIPIY-KT-NIVLIGDGS-----------------------DVT 292 (541)
T ss_pred CCccCHHHHHHhhhhcCCceEEEEEeCc-eeEE-EEecCCC-Cc-cEEEEecCC-----------------------Cce
Confidence 4578999999655443312346899999 9975 3444221 45 788877652 001
Q ss_pred EEecCe-eEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCc----eEEE-EeecceEEeceEEECCCCCCCC
Q 041224 127 TVNGNG-KIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGN----HISV-YGCNDVSISNLKIIAPESSPNT 200 (400)
Q Consensus 127 ~I~G~G-~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~----~i~~-~~~~nv~i~~~~I~~~~~~~n~ 200 (400)
.|+|.. ..+| |.. .+. .-.....+++..+|++|+|.... .+.+ ..++...+.+|+|....|.
T Consensus 293 iIt~~~~~~~g-----~~T---~~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDT--- 360 (541)
T PLN02416 293 FITGNRSVVDG-----WTT---FRS-ATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDT--- 360 (541)
T ss_pred EEeCCCccCCC-----CCc---cce-EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccch---
Confidence 111100 0011 100 111 22333578999999999987432 2222 2467889999999986543
Q ss_pred CeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC---ce--EEEeccCCCCCCCCEEEEEEEeeEEeCCc
Q 041224 201 DGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG---HG--ISIGSLGANGGTSIVEDVHVRDCTFKGTK 275 (400)
Q Consensus 201 DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~i~ni~v~N~~~~~~~ 275 (400)
+... +.+-.+++|+|...=|-| ++ .....++||.+..- .| -.|=..++ .....-..+.|+||++.+..
T Consensus 361 --Ly~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avfq~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~i~~~~ 433 (541)
T PLN02416 361 --LYVH-SFRQFYRECDIYGTIDYI-FG--NAAVVFQACNIVSKMPMPGQFTVITAQSR-DTPDEDTGISIQNCSILATE 433 (541)
T ss_pred --hccC-CCceEEEeeEEeecccee-ec--cceEEEeccEEEEecCCCCCceEEECCCC-CCCCCCCEEEEEeeEEecCC
Confidence 3222 245688999998876655 32 35788888888531 11 11211111 12234468899999998643
Q ss_pred ceE----EEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 276 NGA----RIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 276 ~gi----~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
.-. ..+.+=|+. ..-..+.|.+..|.+.
T Consensus 434 ~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~~ 466 (541)
T PLN02416 434 DLYSNSNSVKSYLGRPWRVYSRTVVLESYIDDF 466 (541)
T ss_pred ccccccccccccccCCCCCCccEEEEecccCCe
Confidence 200 112222222 3345667777777664
No 61
>PLN02314 pectinesterase
Probab=97.64 E-value=0.0047 Score=64.38 Aligned_cols=213 Identities=17% Similarity=0.213 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++......--+|+|.+| +|.-. +.+... |. +++|.++|.= ...|... .+.
T Consensus 288 g~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g~~-------------~tiIt~~--~~~ 348 (586)
T PLN02314 288 GDVKTINEAVASIPKKSKSRFVIYVKEG-TYVEN-VLLDKS-KW-NVMIYGDGKD-------------KTIISGS--LNF 348 (586)
T ss_pred CCccCHHHHHhhccccCCceEEEEEcCc-eEEEE-EEecCC-Cc-eEEEEecCCC-------------CcEEEec--CCc
Confidence 3577899999654443223457999999 99853 444321 44 7888776520 0111110 110
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNTD 201 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~D 201 (400)
.||.. .|+ ..-.....+++..++++|+|... -.+.+. ..+...+.+|.+....+
T Consensus 349 -------~~g~~-t~~--------saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QD----- 407 (586)
T PLN02314 349 -------VDGTP-TFS--------TATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQD----- 407 (586)
T ss_pred -------CCCCC-ccc--------eEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccc-----
Confidence 11111 111 12333467889999999998742 223332 46778889999988544
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ceEEEeccCCCCCCCCEEEEEEEeeEEeCCc
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HGISIGSLGANGGTSIVEDVHVRDCTFKGTK 275 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~ 275 (400)
-+...+ ..-.++||+|...=|-| + |.....++||.+..- .+ .|-..++ .+...-..+.|.||++.+..
T Consensus 408 TLy~~~-~rq~y~~C~I~GtvDFI-F--G~a~avf~~c~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 408 TLYAHS-NRQFYRDCDITGTIDFI-F--GNAAVVFQNCNIQPRQPLPNQFN-TITAQGK-KDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred hheeCC-CCEEEEeeEEEecccee-c--cCceeeeeccEEEEecCCCCCCc-eEecCCC-CCCCCCCEEEEEeeEEecCC
Confidence 333332 45688899998866654 2 235788888888531 12 1211111 12344567899999998754
Q ss_pred ceEEEEeecCCC-eeEEeEEEEeEEEecCCcc
Q 041224 276 NGARIKTWQGGS-GHARRISFERIRLESSDNP 306 (400)
Q Consensus 276 ~gi~i~~~~~~~-g~i~nI~f~ni~~~~~~~~ 306 (400)
. +..+.+=|+. ..-..+.|.+..|.+.=.|
T Consensus 482 ~-~~~~~yLGRpW~~ysr~v~~~s~i~~~I~p 512 (586)
T PLN02314 482 N-LTAPTYLGRPWKDFSTTVIMQSYIGSFLNP 512 (586)
T ss_pred c-ccccccccCCCCCCceEEEEecccCCcccc
Confidence 2 1112222222 2334567777777665333
No 62
>PLN02916 pectinesterase family protein
Probab=97.64 E-value=0.0069 Score=61.54 Aligned_cols=211 Identities=13% Similarity=0.143 Sum_probs=117.0
Q ss_pred chHHHHHHHHHHHhc---CCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeee
Q 041224 47 DDSQAFLKAWKSICG---SKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNV 123 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~---~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~ 123 (400)
-|-..||+||+++.+ .....-+|+|.+| +|.- .+.+... |. +++|.++|.- ...|...
T Consensus 197 G~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~-~i~l~G~g~~-------------~TiIt~~-- 257 (502)
T PLN02916 197 GTHRTINQALAALSRMGKSRTNRVIIYVKAG-VYNE-KVEIDRH-MK-NVMFVGDGMD-------------KTIITNN-- 257 (502)
T ss_pred CCccCHHHHHHhcccccCCCCceEEEEEeCc-eeeE-EEEecCC-Cc-eEEEEecCCC-------------CcEEEeC--
Confidence 457899999965542 1112357999999 9985 3444321 44 7888776520 0011111
Q ss_pred eceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCC
Q 041224 124 NGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSP 198 (400)
Q Consensus 124 ~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~ 198 (400)
.++ -.|.++. ...-.....+++..+|++|+|... ..+.+. .++...+.+|.|....|
T Consensus 258 ~~~-~~g~~T~---------------~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QD-- 319 (502)
T PLN02916 258 RNV-PDGSTTY---------------SSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQD-- 319 (502)
T ss_pred Ccc-CCCCcce---------------eeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCc--
Confidence 000 0111111 112334456788999999998743 223332 46788899999988543
Q ss_pred CCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ce-EEEeccCCCCCCCCEEEEEEEeeEE
Q 041224 199 NTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HG-ISIGSLGANGGTSIVEDVHVRDCTF 271 (400)
Q Consensus 199 n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~v~N~~~ 271 (400)
-+.... .+-.+++|+|...=|-| + |.....++||.+..- .| |.-- ++ .....-..+.|.||++
T Consensus 320 ---TLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avFq~C~I~~~~~~~~~~g~ITAq--~r-~~~~~~tGfvf~~C~i 389 (502)
T PLN02916 320 ---TLFVHS-LRQFYRDCHIYGTIDFI-F--GDAAVVFQNCDIFVRRPMDHQGNMITAQ--GR-DDPHENTGISIQHSRV 389 (502)
T ss_pred ---eeEeCC-CCEEEEecEEeccccee-c--cCceEEEecCEEEEecCCCCCcceEEec--CC-CCCCCCcEEEEEeeEE
Confidence 343333 45678999998876654 2 235788888887521 12 2211 11 1223446889999999
Q ss_pred eCCcceE----EEEeecCCC-eeEEeEEEEeEEEecCC
Q 041224 272 KGTKNGA----RIKTWQGGS-GHARRISFERIRLESSD 304 (400)
Q Consensus 272 ~~~~~gi----~i~~~~~~~-g~i~nI~f~ni~~~~~~ 304 (400)
.+..... ..+.+=|+. ..-..+.|.+..|.+.=
T Consensus 390 t~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t~~~~~I 427 (502)
T PLN02916 390 RASPEFEAVKGRFKSFLGRPWKKYSRTVFLKTDLDGLI 427 (502)
T ss_pred ecCccccccccccceEeecCCCCCceEEEEecccCCeE
Confidence 8753210 011221222 33467777777777643
No 63
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.63 E-value=0.0046 Score=63.61 Aligned_cols=207 Identities=13% Similarity=0.144 Sum_probs=115.3
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++.....+.-+|+|.+| +|.-. +.+... |. +++|.++|.= ...|... .+.
T Consensus 242 G~f~TIq~Av~a~p~~~~~r~vI~Vk~G-vY~E~-V~I~~~-k~-~i~l~G~g~~-------------~tiIt~~--~~~ 302 (537)
T PLN02506 242 GHYRTITEAINEAPNHSNRRYIIYVKKG-VYKEN-IDMKKK-KT-NIMLVGDGIG-------------QTVVTGN--RNF 302 (537)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCC-eeeEE-EeccCC-Cc-eEEEEEcCCC-------------CeEEEeC--ccc
Confidence 3578999999655443323468999999 99765 222211 34 7777766420 0011111 010
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNTD 201 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~D 201 (400)
..|.++. + ..-.....+++..+|++|+|... -.+.+. ..+.+.+.+|.|....|
T Consensus 303 -~~g~~T~--------------~-saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QD----- 361 (537)
T PLN02506 303 -MQGWTTF--------------R-TATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQD----- 361 (537)
T ss_pred -cCCCCcc--------------c-ceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccc-----
Confidence 0111111 1 12344567899999999998743 223322 46788889999888654
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC-----ceEEEeccCCCCCCCCEEEEEEEeeEEeCCcc
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG-----HGISIGSLGANGGTSIVEDVHVRDCTFKGTKN 276 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~ 276 (400)
-+.... .+-.++||+|...=|-| ++ .....++||.+..- ..-.|=..++ .....-..+.|+||++.+..
T Consensus 362 TLy~~~-~rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~r~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~i~~~~- 435 (537)
T PLN02506 362 TLYAHS-LRQFYRECEIYGTIDFI-FG--NGAAVLQNCKIYTRVPLPLQKVTITAQGR-KSPHQSTGFSIQDSYVLATQ- 435 (537)
T ss_pred cceecC-CceEEEeeEEecccceE-cc--CceeEEeccEEEEccCCCCCCceEEccCC-CCCCCCcEEEEEcCEEccCC-
Confidence 233322 45688999998866654 32 35688888888531 1111211111 11233467889999887642
Q ss_pred eEEEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 277 GARIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 277 gi~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
..++. +. +.-..+.|.+..|.+.
T Consensus 436 ~~yLG----RPW~~~sr~v~~~t~l~~~ 459 (537)
T PLN02506 436 PTYLG----RPWKQYSRTVFMNTYMSQL 459 (537)
T ss_pred ceEEe----cCCCCCceEEEEecCCCCe
Confidence 23332 21 3345666777777654
No 64
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.62 E-value=0.0062 Score=63.14 Aligned_cols=211 Identities=15% Similarity=0.157 Sum_probs=118.1
Q ss_pred chHHHHHHHHHHHhcC---CCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeee
Q 041224 47 DDSQAFLKAWKSICGS---KSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNV 123 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~---~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~ 123 (400)
-|-..||+||+++... ..+--+|||.+| +|+-. +.+... |. +++|.++|.- ...|....
T Consensus 260 G~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g~~-------------~TiIt~~~- 321 (566)
T PLN02713 260 GNFTTINDAVAAAPNNTDGSNGYFVIYVTAG-VYEEY-VSIPKN-KK-YLMMIGDGIN-------------QTVITGNR- 321 (566)
T ss_pred CCCCCHHHHHHhhhcccCCCCceEEEEEcCc-EEEEE-EEecCC-Cc-eEEEEecCCC-------------CcEEEcCC-
Confidence 4578999999655442 112357999999 99753 444321 44 7888776520 00111110
Q ss_pred eceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEE-EeecceEEeceEEECCCCCC
Q 041224 124 NGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISV-YGCNDVSISNLKIIAPESSP 198 (400)
Q Consensus 124 ~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~-~~~~nv~i~~~~I~~~~~~~ 198 (400)
++ ..|.++. +. .-.....+++..++++|+|... ..+.+ ...+...+.+|.|....|
T Consensus 322 -~~-~~g~~T~--------------~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD-- 382 (566)
T PLN02713 322 -SV-VDGWTTF--------------NS-ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQD-- 382 (566)
T ss_pred -cc-cCCCccc--------------cc-eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCc--
Confidence 00 0111111 11 2333456899999999999643 22332 246788999999998543
Q ss_pred CCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ce-EEEeccCCCCCCCCEEEEEEEeeEE
Q 041224 199 NTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HG-ISIGSLGANGGTSIVEDVHVRDCTF 271 (400)
Q Consensus 199 n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~v~N~~~ 271 (400)
-+.... .+-.+++|+|...=|-| + |...+.++||.+... .+ |.-- +. .+...-..+.|.||++
T Consensus 383 ---TLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~G~vf~~c~i 452 (566)
T PLN02713 383 ---TLYTHS-LRQFYRECDIYGTVDFI-F--GNAAVVFQNCNLYPRLPMQGQFNTITAQ--GR-TDPNQNTGTSIQNCTI 452 (566)
T ss_pred ---ceEECC-CCEEEEeeEEeccccee-c--ccceEEEeccEEEEecCCCCCcceeeec--CC-CCCCCCCEEEEEcCEE
Confidence 344333 45789999998866654 2 345788999988531 12 2211 11 1223446799999999
Q ss_pred eCCcceE----EEEeecCCC-eeEEeEEEEeEEEecCC
Q 041224 272 KGTKNGA----RIKTWQGGS-GHARRISFERIRLESSD 304 (400)
Q Consensus 272 ~~~~~gi----~i~~~~~~~-g~i~nI~f~ni~~~~~~ 304 (400)
....... ..+.+=|+. ..-..+.|.+..|.+.=
T Consensus 453 ~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~~I 490 (566)
T PLN02713 453 KAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDGLI 490 (566)
T ss_pred ecCCcccccccccceeeecCCCCcceEEEEecccCCee
Confidence 8753200 111221222 33456777777777643
No 65
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.62 E-value=0.0063 Score=63.90 Aligned_cols=213 Identities=14% Similarity=0.121 Sum_probs=121.6
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++......--+|+|.+| +|+-. +.+... |. +++|.++|.- ...|... .+.
T Consensus 260 G~f~TIq~Av~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~Gdg~~-------------~TiIt~~--~~~ 320 (670)
T PLN02217 260 GQYKTINEALNFVPKKKNTTFVVHIKAG-IYKEY-VQVNRS-MT-HLVFIGDGPD-------------KTVISGS--KSY 320 (670)
T ss_pred CCccCHHHHHHhccccCCceEEEEEeCC-ceEEE-EEEcCC-CC-cEEEEecCCC-------------CeEEEcC--Ccc
Confidence 4578999999654443223457999999 99764 344321 34 7777766420 0011100 000
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNTD 201 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~D 201 (400)
-.|.++. + ..-.....+++..+|++|+|... ..+.+. ..+...+.+|.|....|
T Consensus 321 -~dg~~T~--------------~-SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD----- 379 (670)
T PLN02217 321 -KDGITTY--------------K-TATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQD----- 379 (670)
T ss_pred -CCCCCcc--------------c-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccc-----
Confidence 0011111 1 12333457889999999998743 233333 47889999999998654
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC-----ceEEEeccCCCCCCCCEEEEEEEeeEEeCCcc
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG-----HGISIGSLGANGGTSIVEDVHVRDCTFKGTKN 276 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~ 276 (400)
-+.... .+-.+++|+|...=|-| ++ .....++||.+..- ..-.|-..|+ .+...-..+.|.||++.+...
T Consensus 380 TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~i~~~~~ 454 (670)
T PLN02217 380 TLYAHS-HRQFYRDCTISGTIDFL-FG--DAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCTIVGEPD 454 (670)
T ss_pred hhccCC-CcEEEEeCEEEEeccEE-ec--CceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeEEecCcc
Confidence 333333 46789999999876655 33 35789999998632 1112211121 123345689999999998532
Q ss_pred eEE----EEeecCCC-eeEEeEEEEeEEEecCC
Q 041224 277 GAR----IKTWQGGS-GHARRISFERIRLESSD 304 (400)
Q Consensus 277 gi~----i~~~~~~~-g~i~nI~f~ni~~~~~~ 304 (400)
-.. .+.+=|+. ..-..+.|.+..|.+.=
T Consensus 455 ~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I 487 (670)
T PLN02217 455 YLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFV 487 (670)
T ss_pred ccccccccceeeccCCCCCceEEEEecccCCeE
Confidence 110 11222322 34567778888777643
No 66
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.59 E-value=0.0077 Score=62.10 Aligned_cols=214 Identities=13% Similarity=0.138 Sum_probs=119.8
Q ss_pred chHHHHHHHHHHHhcC--CCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeee
Q 041224 47 DDSQAFLKAWKSICGS--KSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVN 124 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~--~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~ 124 (400)
-|-..||+||+++... ....-+|+|.+| +|+-. +.+... |. +++|.++|.- ...|... .
T Consensus 233 G~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g~~-------------~TvIt~~--~ 293 (539)
T PLN02995 233 GHFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQEN-INVRLN-ND-DIMLVGDGMR-------------STIITGG--R 293 (539)
T ss_pred CCccCHHHHHHhcccccCCCceEEEEEeCC-EeEEE-EEecCC-CC-cEEEEEcCCC-------------CeEEEeC--C
Confidence 4688999999655421 113467999999 99775 333211 45 8888877520 0011100 0
Q ss_pred ceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCC
Q 041224 125 GLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPN 199 (400)
Q Consensus 125 nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n 199 (400)
+. ..|.++. + ..-.....+++..++++|+|... ..+.+. ..+...+.+|+|....|.
T Consensus 294 ~~-~~~~~T~--------------~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDT-- 355 (539)
T PLN02995 294 SV-KGGYTTY--------------N-SATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDT-- 355 (539)
T ss_pred cc-CCCCccc--------------c-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccch--
Confidence 00 0010111 1 12233457789999999998743 233332 467889999999986543
Q ss_pred CCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ceEEEeccCCCCCCCCEEEEEEEeeEEeC
Q 041224 200 TDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HGISIGSLGANGGTSIVEDVHVRDCTFKG 273 (400)
Q Consensus 200 ~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~v~N~~~~~ 273 (400)
+.... .+-.+++|+|...=|-| ++ .....++||.+..- .| .|=..++ .....-..+.|.||++.+
T Consensus 356 ---Ly~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~~c~i~~ 426 (539)
T PLN02995 356 ---LMVHS-QRQFYRECYIYGTVDFI-FG--NAAAVFQNCIILPRRPLKGQAN-VITAQGR-ADPFQNTGISIHNSRILP 426 (539)
T ss_pred ---hccCC-CceEEEeeEEeeccceE-ec--ccceEEeccEEEEecCCCCCcc-eEecCCC-CCCCCCceEEEEeeEEec
Confidence 33222 45688999999876655 32 35778888888532 12 1211111 122344689999999987
Q ss_pred CcceE----EEEeecCCC-eeEEeEEEEeEEEecCCcc
Q 041224 274 TKNGA----RIKTWQGGS-GHARRISFERIRLESSDNP 306 (400)
Q Consensus 274 ~~~gi----~i~~~~~~~-g~i~nI~f~ni~~~~~~~~ 306 (400)
..... ..+.+=|+. ..-..+.|.+..|.+.=.|
T Consensus 427 ~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~I~p 464 (539)
T PLN02995 427 APDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNVVSP 464 (539)
T ss_pred CCcccccccccceeccCCCCCCcceEEEeccccCcccc
Confidence 53210 112222322 3345677888887765444
No 67
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.59 E-value=0.0052 Score=63.30 Aligned_cols=210 Identities=13% Similarity=0.164 Sum_probs=117.0
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++.+..+.--+|+|.+| +|+-. +.+... |. +++|.++|.= ...|... .+.
T Consensus 246 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g~~-------------~TiIt~~--~~~ 306 (548)
T PLN02301 246 GKYKTVKEAVASAPDNSKTRYVIYVKKG-TYKEN-VEIGKK-KK-NLMLVGDGMD-------------STIITGS--LNV 306 (548)
T ss_pred CCcccHHHHHHhhhhcCCceEEEEEeCc-eeeEE-EEecCC-Cc-eEEEEecCCC-------------CcEEEeC--Ccc
Confidence 3578999999655543312357999999 99753 444321 44 7888776520 0011100 010
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNTD 201 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~D 201 (400)
..|.++. + ..-.....+++..+|++|+|... ..+.+. .++...+.+|.|....|
T Consensus 307 -~dg~~T~--------------~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD----- 365 (548)
T PLN02301 307 -IDGSTTF--------------R-SATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD----- 365 (548)
T ss_pred -CCCCCce--------------e-eEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc-----
Confidence 0111111 1 12334456889999999998643 223332 46788999999998654
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ce-EEEeccCCCCCCCCEEEEEEEeeEEeCC
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HG-ISIGSLGANGGTSIVEDVHVRDCTFKGT 274 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~v~N~~~~~~ 274 (400)
-+.... .+-.++||+|...=|-| + |.....++||.+..- .+ +.- .|. .+...-..+.|.||++...
T Consensus 366 TLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avfq~c~i~~~~~~~~~~~~iTA--qgr-~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 366 TLYAHS-LRQFYRDSYITGTVDFI-F--GNAAVVFQNCKIVARKPMAGQKNMVTA--QGR-TDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred cceecC-CcEEEEeeEEEecccee-c--ccceeEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCCEEEEEeeEEecC
Confidence 333333 45688999998876654 2 235788888887531 12 222 111 1233456889999999875
Q ss_pred cceE----EEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 275 KNGA----RIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 275 ~~gi----~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
..-. ..+.+=|+. ..-..+.|.+..|.+.
T Consensus 439 ~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~ 472 (548)
T PLN02301 439 SDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDDH 472 (548)
T ss_pred ccccccccccceeeecCCCCCceEEEEecccCCe
Confidence 3210 011121222 3345666777766654
No 68
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.58 E-value=0.01 Score=60.12 Aligned_cols=211 Identities=10% Similarity=0.085 Sum_probs=117.2
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++.+..+.--+|+|.+| +|+-. +.+... |. +++|.++|.= ...|... .++
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-nItliGdg~~-------------~TiIt~n--~~~ 267 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDEI-VRIGST-KP-NLTLIGDGQD-------------STIITGN--LSA 267 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCC-eeEEE-EEecCC-Cc-cEEEEecCCC-------------ceEEEEc--ccc
Confidence 4678899999655543323457999999 99854 444211 45 8888877520 0011111 000
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNTD 201 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~D 201 (400)
..|.++. + ..-.....+++..++++|+|... ..+.+. .++...+.+|.|....|
T Consensus 268 -~~g~~T~--------------~-SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQD----- 326 (509)
T PLN02488 268 -SNGKRTF--------------Y-TATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQD----- 326 (509)
T ss_pred -cCCCCce--------------e-eEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCc-----
Confidence 0111111 0 12233456788889999988642 233333 46788899999988544
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ceEEEeccCCCCCCCCEEEEEEEeeEEeCCc
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HGISIGSLGANGGTSIVEDVHVRDCTFKGTK 275 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~ 275 (400)
-+... +.+-.+++|+|...=|-| + |...+.++||.+..- .+ .|=..++ .....-..+.|.||++....
T Consensus 327 TLy~~-~~RqyyrdC~I~GtVDFI-F--G~a~avFq~C~I~sr~~~~~~~~-~ITAq~R-~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 327 ALYPH-RDRQFYRECFITGTVDFI-C--GNAAAVFQFCQIVARQPMMGQSN-VITAQSR-ESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ceeeC-CCCEEEEeeEEeeccceE-e--cceEEEEEccEEEEecCCCCCCE-EEEeCCC-CCCCCCcEEEEEeeEEecCC
Confidence 34333 346788999998876655 2 346788899988531 12 2211111 11233457899999988753
Q ss_pred ceE----EEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 276 NGA----RIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 276 ~gi----~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
... ..+.+=|+. ..-+.+.|.+..|.+.
T Consensus 401 ~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~~ 433 (509)
T PLN02488 401 DLDPVKATVKTYLGRPWRKYSTVAVLQSFIGDL 433 (509)
T ss_pred cccccccccceeecCCCCCCccEEEEeccCCCe
Confidence 211 112222322 3345566666666653
No 69
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.49 E-value=0.011 Score=61.42 Aligned_cols=215 Identities=13% Similarity=0.181 Sum_probs=116.7
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++......--+|+|.+| +|+-. +.+... |. +++|.++|.- ...|... .+.
T Consensus 269 G~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~-k~-~i~l~G~g~~-------------~TiIt~~--~~~ 329 (572)
T PLN02990 269 GQYKTINEALNAVPKANQKPFVIYIKQG-VYNEK-VDVTKK-MT-HVTFIGDGPT-------------KTKITGS--LNF 329 (572)
T ss_pred CCCcCHHHHHhhCcccCCceEEEEEeCc-eeEEE-EEecCC-CC-cEEEEecCCC-------------ceEEEec--ccc
Confidence 4578899999655443213457999999 99864 444321 45 8888877520 0111111 111
Q ss_pred EEec-CeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCC
Q 041224 127 TVNG-NGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNT 200 (400)
Q Consensus 127 ~I~G-~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~ 200 (400)
.. | .|+. + ..-.....+++..+|++|+|... ..+.+. .++...+.+|.|....|
T Consensus 330 ~~-g~~~T~--------------~-saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD---- 389 (572)
T PLN02990 330 YI-GKVKTY--------------L-TATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQD---- 389 (572)
T ss_pred CC-CCccce--------------e-eeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccc----
Confidence 00 1 0111 1 12233457789999999998743 223332 46778888888887544
Q ss_pred CeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC---ce--EEEeccCCCCCCCCEEEEEEEeeEEeCCc
Q 041224 201 DGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG---HG--ISIGSLGANGGTSIVEDVHVRDCTFKGTK 275 (400)
Q Consensus 201 DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~i~ni~v~N~~~~~~~ 275 (400)
-+... +.+-.+++|+|...=|-| ++ .....++||.+..- .| -.|=..++ .+...-..+.|.||++.+..
T Consensus 390 -TLy~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 390 -TLYVH-SHRQFFRDCTVSGTVDFI-FG--DAKVVLQNCNIVVRKPMKGQSCMITAQGR-SDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred -hhccC-CCcEEEEeeEEecccceE-cc--CceEEEEccEEEEecCCCCCceEEEeCCC-CCCCCCceEEEEeeEEecCc
Confidence 23322 245678889988766655 22 35678888887521 11 11211111 11233457888888887754
Q ss_pred ceEE----EEeecCCC-eeEEeEEEEeEEEecCCcc
Q 041224 276 NGAR----IKTWQGGS-GHARRISFERIRLESSDNP 306 (400)
Q Consensus 276 ~gi~----i~~~~~~~-g~i~nI~f~ni~~~~~~~~ 306 (400)
.... .+.+=|+. ..-..+.|.+..|.+.=.|
T Consensus 464 ~~~~~~~~~~~yLGRpW~~ysrvV~~~s~i~~~I~p 499 (572)
T PLN02990 464 AYIPVKSINKAYLGRPWKEFSRTIIMGTTIDDVIDP 499 (572)
T ss_pred cccccccccceEeecCCCCCceEEEEecccCCeecc
Confidence 2111 11222222 3345677777777664333
No 70
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.49 E-value=0.008 Score=62.64 Aligned_cols=212 Identities=14% Similarity=0.192 Sum_probs=114.7
Q ss_pred chHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEEEeeeece
Q 041224 47 DDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL 126 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~~~~~~nv 126 (400)
-|-..||+||+++......--+|||.+| +|+-. +.+... |. +++|.++|.= ...|... .++
T Consensus 285 G~f~TI~~Av~a~p~~~~~r~vI~ik~G-vY~E~-V~i~~~-k~-ni~l~Gdg~~-------------~TiIt~~--~~~ 345 (587)
T PLN02313 285 GDFTTVAAAVAAAPEKSNKRFVIHIKAG-VYREN-VEVTKK-KK-NIMFLGDGRG-------------KTIITGS--RNV 345 (587)
T ss_pred CCCccHHHHHHhccccCCceEEEEEeCc-eeEEE-EEeCCC-CC-eEEEEecCCC-------------ccEEEeC--Ccc
Confidence 3678999999655443323458999999 99764 333221 34 7787776520 0111111 111
Q ss_pred EEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEECCCCCCCCC
Q 041224 127 TVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIAPESSPNTD 201 (400)
Q Consensus 127 ~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~~~~~~n~D 201 (400)
..|.++. + ..-.....+++..+|++|+|... ..+.+. ..+...+.+|.|....|
T Consensus 346 -~~g~~t~--------------~-sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QD----- 404 (587)
T PLN02313 346 -VDGSTTF--------------H-SATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQD----- 404 (587)
T ss_pred -cCCCCce--------------e-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccc-----
Confidence 1111111 1 12333456789999999998743 233332 46778888888887544
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC---ce--EEEeccCCCCCCCCEEEEEEEeeEEeCCcc
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG---HG--ISIGSLGANGGTSIVEDVHVRDCTFKGTKN 276 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~i~ni~v~N~~~~~~~~ 276 (400)
-+.... .+-.+++|+|...=|-| + |.....++||.+..- .| -.|-..|. .+...-..+.|+||++.....
T Consensus 405 TLy~~~-~rq~y~~c~I~GtvDFI-F--G~a~avfq~c~i~~r~~~~~~~~~iTAqgr-~~~~~~tG~v~~~c~i~~~~~ 479 (587)
T PLN02313 405 TLYVHS-NRQFFVKCHITGTVDFI-F--GNAAAVLQDCDINARRPNSGQKNMVTAQGR-SDPNQNTGIVIQNCRIGGTSD 479 (587)
T ss_pred hhccCC-CcEEEEeeEEeecccee-c--cceeEEEEccEEEEecCCCCCcceEEecCC-CCCCCCceEEEEecEEecCCc
Confidence 333332 35578889988876655 2 345788888887521 11 11111111 123345678888998876532
Q ss_pred eE----EEEeecCCC-eeEEeEEEEeEEEecC
Q 041224 277 GA----RIKTWQGGS-GHARRISFERIRLESS 303 (400)
Q Consensus 277 gi----~i~~~~~~~-g~i~nI~f~ni~~~~~ 303 (400)
-. ..+.+-|+. ..-..+.|.+..|.+.
T Consensus 480 ~~~~~~~~~~yLGRPW~~ysr~v~~~s~i~~~ 511 (587)
T PLN02313 480 LLAVKGTFPTYLGRPWKEYSRTVIMQSDISDV 511 (587)
T ss_pred cccccccchhhccCCCCCCccEEEEecccCCe
Confidence 11 111221222 2234456666666554
No 71
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.34 E-value=0.0021 Score=58.00 Aligned_cols=91 Identities=24% Similarity=0.333 Sum_probs=61.6
Q ss_pred EEE-eeeCcEEEEceEEeC---------------CCCceEEEEeecceEEeceEEECCCC---CCCCCe-eeec-CcccE
Q 041224 153 LSF-GSCNNLVFRGLTHVD---------------SPGNHISVYGCNDVSISNLKIIAPES---SPNTDG-IDIT-HSSNV 211 (400)
Q Consensus 153 i~~-~~~~nv~i~~v~i~n---------------s~~~~i~~~~~~nv~i~~~~I~~~~~---~~n~DG-i~i~-~s~nV 211 (400)
+.+ .+++||.|++++|++ .....+.+..+++|.|++|++..... ....|| +++. .+.+|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 444 489999999999988 23456899999999999999997521 112565 5764 58999
Q ss_pred EEEeeEEecCCceEEEcCC-------ceeEEEEeeEEcC
Q 041224 212 QIRDCTIATGDDCVAIGTD-------TSNIAVTGVICGP 243 (400)
Q Consensus 212 ~I~n~~i~~~dD~i~i~s~-------~~ni~i~n~~~~~ 243 (400)
+|++|.|...+.+..+++. ..++++.++.+.+
T Consensus 119 TiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~ 157 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFAN 157 (200)
T ss_dssp EEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEE
T ss_pred EEEchhccccccccccCCCCCccccCCceEEEEeEEECc
Confidence 9999999876444434431 3688998888854
No 72
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.33 E-value=0.021 Score=59.04 Aligned_cols=215 Identities=14% Similarity=0.179 Sum_probs=119.5
Q ss_pred CCCcchHHHHHHHHHHHhcCCC---CCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCCCCccCCCccccEE
Q 041224 43 DGETDDSQAFLKAWKSICGSKS---NAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLL 119 (400)
Q Consensus 43 dg~tddt~aiq~Ai~~a~~~~~---gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~~~~~~~~~~~~i~ 119 (400)
||. -|-..||+||+++..... +--+|||.+| +|.-. |.+... |. +++|.++|.
T Consensus 230 dGs-G~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G-~Y~E~-V~i~~~-k~-~i~l~G~g~------------------- 285 (538)
T PLN03043 230 YGT-DNFTTITDAIAAAPNNSKPEDGYFVIYAREG-YYEEY-VVVPKN-KK-NIMLIGDGI------------------- 285 (538)
T ss_pred CCC-CCCcCHHHHHHhccccCCCCcceEEEEEcCe-eeEEE-EEeCCC-CC-cEEEEecCC-------------------
Confidence 443 458899999965443210 1247999999 99753 444221 44 888877652
Q ss_pred EeeeeceEEecCe-eEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCC----ceEEEE-eecceEEeceEEEC
Q 041224 120 FSNVNGLTVNGNG-KIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPG----NHISVY-GCNDVSISNLKIIA 193 (400)
Q Consensus 120 ~~~~~nv~I~G~G-~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~----~~i~~~-~~~nv~i~~~~I~~ 193 (400)
....|+|.- ..|| |.. .+ ..-.....+++..++++|+|... -.+.+. .++...+.+|.|..
T Consensus 286 ----~~tiIt~~~~~~dg-----~~T---~~-saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~g 352 (538)
T PLN03043 286 ----NKTIITGNHSVVDG-----WTT---FN-SSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEG 352 (538)
T ss_pred ----CCeEEEeCCccCCC-----Ccc---cc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEec
Confidence 111111110 0111 110 11 13344467899999999998643 233332 46778899999998
Q ss_pred CCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCC------ce-EEEeccCCCCCCCCEEEEEE
Q 041224 194 PESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPG------HG-ISIGSLGANGGTSIVEDVHV 266 (400)
Q Consensus 194 ~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~v 266 (400)
..+ -+.... .+-.++||+|...=|-| ++ .....++||.+..- .+ |.-- +. .+...-..+.|
T Consensus 353 yQD-----TLy~~~-~rq~y~~c~I~GtVDFI-FG--~a~avfq~c~i~~r~~~~~~~~~iTA~--~r-~~~~~~tG~~~ 420 (538)
T PLN03043 353 YQD-----TLYVHS-LRQFYRECDIYGTVDFI-FG--NAAAIFQNCNLYARKPMANQKNAFTAQ--GR-TDPNQNTGISI 420 (538)
T ss_pred cCc-----ccccCC-CcEEEEeeEEeeccceE-ee--cceeeeeccEEEEecCCCCCCceEEec--CC-CCCCCCceEEE
Confidence 654 233332 45688999998876655 32 35788888888531 12 2221 11 12234467899
Q ss_pred EeeEEeCCcceE----EEEeecCCC-eeEEeEEEEeEEEecCCcc
Q 041224 267 RDCTFKGTKNGA----RIKTWQGGS-GHARRISFERIRLESSDNP 306 (400)
Q Consensus 267 ~N~~~~~~~~gi----~i~~~~~~~-g~i~nI~f~ni~~~~~~~~ 306 (400)
.||++.....-. ..+.+=|+. ..-..+.|.+..|.+.=.|
T Consensus 421 ~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~~I~p 465 (538)
T PLN03043 421 INCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGDLIQP 465 (538)
T ss_pred EecEEecCCcccccccccceeccCCCCCCceEEEEecccCCeecc
Confidence 999998753210 011222322 3345677777777664333
No 73
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.22 E-value=0.076 Score=52.01 Aligned_cols=157 Identities=12% Similarity=0.145 Sum_probs=93.6
Q ss_pred EeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEee-eeeecCCCCCCCeEEEEeEE-EEccCCCCccC
Q 041224 34 SVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLN-PVSFQGPCKSSSINVQIQGN-IVAPHSSAWDG 111 (400)
Q Consensus 34 nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~-~l~l~~~~ks~~v~l~~~g~-i~~~~~~~~~~ 111 (400)
.|+.|-..++. -+..||+. -+.|++-||++|.+. ++.++ + ...|.+.|. +......
T Consensus 45 qvkt~~~~P~e------Dle~~I~~-------haKVaL~Pg~~Y~i~~~V~I~----~-~cYIiGnGA~V~v~~~~---- 102 (386)
T PF01696_consen 45 QVKTYWMEPGE------DLEEAIRQ-------HAKVALRPGAVYVIRKPVNIR----S-CCYIIGNGATVRVNGPD---- 102 (386)
T ss_pred eEEEEEcCCCc------CHHHHHHh-------cCEEEeCCCCEEEEeeeEEec----c-eEEEECCCEEEEEeCCC----
Confidence 45667766654 35667742 236888888899995 89984 4 677777653 3221100
Q ss_pred CCccccEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCC-CceEEEEeecceEEeceE
Q 041224 112 HDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSP-GNHISVYGCNDVSISNLK 190 (400)
Q Consensus 112 ~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~-~~~i~~~~~~nv~i~~~~ 190 (400)
+.- +.+.- + ...|. +.+-.++++.|+.+...+ .-++-+....++.+.+|.
T Consensus 103 ---~~~--------f~v~~------~---------~~~P~---V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~ 153 (386)
T PF01696_consen 103 ---RVA--------FRVCM------Q---------SMGPG---VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCS 153 (386)
T ss_pred ---Cce--------EEEEc------C---------CCCCe---EeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeE
Confidence 000 11110 0 01232 223346777788877665 556667777788888888
Q ss_pred EECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCc-eEE
Q 041224 191 IIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGH-GIS 248 (400)
Q Consensus 191 I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~-gi~ 248 (400)
+.+.. |.-++.-....|++|++....-+|.-++ ...+.|++|.|.... |+.
T Consensus 154 F~gf~------g~cl~~~~~~~VrGC~F~~C~~gi~~~~-~~~lsVk~C~FekC~igi~ 205 (386)
T PF01696_consen 154 FFGFH------GTCLESWAGGEVRGCTFYGCWKGIVSRG-KSKLSVKKCVFEKCVIGIV 205 (386)
T ss_pred EecCc------ceeEEEcCCcEEeeeEEEEEEEEeecCC-cceEEeeheeeeheEEEEE
Confidence 88742 2333334577888888877655553333 567888888887654 553
No 74
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.99 E-value=0.00095 Score=46.81 Aligned_cols=38 Identities=32% Similarity=0.399 Sum_probs=23.5
Q ss_pred ccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeee
Q 041224 40 AVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPV 82 (400)
Q Consensus 40 a~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l 82 (400)
|+|||++|||+||.+|+. +.. .+.++=-.|.||++.+|
T Consensus 1 A~GDGvtdDt~A~~a~l~-a~~----~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALE-ASP----VGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHH-HS-----TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHh-ccC----CCeEEecCCceEEEeeC
Confidence 789999999999999994 333 34566677789999765
No 75
>PLN02682 pectinesterase family protein
Probab=96.52 E-value=0.25 Score=48.51 Aligned_cols=112 Identities=8% Similarity=0.065 Sum_probs=74.2
Q ss_pred EeecceEEeceEEECCCCC-----CC--CCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEec
Q 041224 179 YGCNDVSISNLKIIAPESS-----PN--TDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGS 251 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~-----~n--~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs 251 (400)
...+++..+|++|.|.... .. .-.+.+. .++..+.||.|....|-+..+. ..-+++||++.+.-.+-+|.
T Consensus 160 v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~-gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~ 236 (369)
T PLN02682 160 VNSPYFIAKNITFKNTAPVPPPGALGKQAVALRIS-ADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGN 236 (369)
T ss_pred EECCCeEEEeeEEEcccccCCCCCCcccEEEEEec-CCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecC
Confidence 3567899999999985311 11 1223333 5899999999999988876654 45799999999887877764
Q ss_pred cCCCCCCCCEEEEEEEeeEEeCCcc-eEEEEeecC-CCeeEEeEEEEeEEEecC
Q 041224 252 LGANGGTSIVEDVHVRDCTFKGTKN-GARIKTWQG-GSGHARRISFERIRLESS 303 (400)
Q Consensus 252 ~g~~~~~~~i~ni~v~N~~~~~~~~-gi~i~~~~~-~~g~i~nI~f~ni~~~~~ 303 (400)
-...|++|++..... .-.|..... ....-....|.|+++...
T Consensus 237 ----------g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 237 ----------GLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred ----------ceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCC
Confidence 347888888874321 123433211 112234677999999874
No 76
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=95.97 E-value=0.26 Score=46.82 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHhcCCCC--CceEEecCCCEEEeeeeeecCCCCCCCeEEEEeE
Q 041224 47 DDSQAFLKAWKSICGSKSN--AAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQG 99 (400)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~g--g~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g 99 (400)
++-..||+|++++.... + --.+.+.+| .|.-. |.+... .. .++|+.++
T Consensus 92 ~~f~TIQaAvdaA~~~~-~~kr~yI~vk~G-vY~e~-v~Vp~~-~~-~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKR-TNKRQYIAVKAG-VYQET-VYVPAA-PG-GITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccC-CCceEEEEEccc-eecee-EEecCC-CC-ceeEEecC
Confidence 67789999997766554 3 234667999 99543 444311 12 37777663
No 77
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=94.24 E-value=0.81 Score=45.64 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=56.1
Q ss_pred eeCcEEEEceEEeCC--CC------ceE-EEEeecceEEeceEEECCCCCCCCCeee--ec----CcccEEEEeeEEec-
Q 041224 157 SCNNLVFRGLTHVDS--PG------NHI-SVYGCNDVSISNLKIIAPESSPNTDGID--IT----HSSNVQIRDCTIAT- 220 (400)
Q Consensus 157 ~~~nv~i~~v~i~ns--~~------~~i-~~~~~~nv~i~~~~I~~~~~~~n~DGi~--i~----~s~nV~I~n~~i~~- 220 (400)
.+.+.++.+..|.+- +. |-. +....++-+|+++.+..-......=.++ +. ...+-+|++++|..
T Consensus 97 ~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~r 176 (425)
T PF14592_consen 97 YANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPR 176 (425)
T ss_dssp -SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E
T ss_pred eecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccccccCceEEecccccc
Confidence 477888888888652 11 321 1246788999999999743211111222 11 23456899999972
Q ss_pred ------CCceEEEcCC-----ceeEEEEeeEEcCCce----EEEeccCCCCCCCCEEEEEEEeeEEeCCcceEEEEeecC
Q 041224 221 ------GDDCVAIGTD-----TSNIAVTGVICGPGHG----ISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQG 285 (400)
Q Consensus 221 ------~dD~i~i~s~-----~~ni~i~n~~~~~~~g----i~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~ 285 (400)
+...|.++.. ..+.+|+++.|..++| |+++|. .-+|++++|.++...+.+.. |
T Consensus 177 p~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvKS~----------~N~ir~Ntf~es~G~ltlRH--G 244 (425)
T PF14592_consen 177 PPKGGNGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVKSS----------DNTIRNNTFRESQGSLTLRH--G 244 (425)
T ss_dssp ---SSS---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEESB----------T-EEES-EEES-SSEEEEEE---
T ss_pred CCCCCCCceeEEEecccccccccceeeecchhhhcCCceeEEEeecC----------CceEeccEEEeccceEEEec--C
Confidence 3456767542 4789999999987665 788874 35788889998877776655 4
Q ss_pred CCeeEEeEE
Q 041224 286 GSGHARRIS 294 (400)
Q Consensus 286 ~~g~i~nI~ 294 (400)
....|++=.
T Consensus 245 n~n~V~gN~ 253 (425)
T PF14592_consen 245 NRNTVEGNV 253 (425)
T ss_dssp SS-EEES-E
T ss_pred CCceEeccE
Confidence 444444333
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=93.92 E-value=2.1 Score=38.74 Aligned_cols=128 Identities=13% Similarity=0.217 Sum_probs=66.5
Q ss_pred cceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEec-CCceEEEcCCceeEEEEeeEEcCCce--EEEeccCCCCCC
Q 041224 182 NDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIAT-GDDCVAIGTDTSNIAVTGVICGPGHG--ISIGSLGANGGT 258 (400)
Q Consensus 182 ~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~-~dD~i~i~s~~~ni~i~n~~~~~~~g--i~igs~g~~~~~ 258 (400)
+..+++|+.|-.+ ..||||-.+ +.+|+|+++.. +.|++.+++....++|.+.-..++.. +..-..
T Consensus 61 ~GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~------ 128 (215)
T PF03211_consen 61 DGATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHNGG------ 128 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SS------
T ss_pred CCCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEecCc------
Confidence 3555666666432 467888776 67888888875 68888888755566666655544333 333211
Q ss_pred CCEEEEEEEeeEEeCCcceEEEEeecC---CCeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEE
Q 041224 259 SIVEDVHVRDCTFKGTKNGARIKTWQG---GSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYI 335 (400)
Q Consensus 259 ~~i~ni~v~N~~~~~~~~gi~i~~~~~---~~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~ 335 (400)
-.++|+|-+..+ .|-...+-.. ..+.=++|.+++........-..|...|.+ ..+|++++++
T Consensus 129 ---Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD----------~ati~~~~~~ 193 (215)
T PF03211_consen 129 ---GTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD----------TATISNSCIK 193 (215)
T ss_dssp ---EEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT----------TEEEEEEEEE
T ss_pred ---eeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC----------eEEEEEEEec
Confidence 236666654443 2322222211 112445666666554443333445555543 2356666665
Q ss_pred e
Q 041224 336 G 336 (400)
Q Consensus 336 n 336 (400)
.
T Consensus 194 ~ 194 (215)
T PF03211_consen 194 G 194 (215)
T ss_dssp E
T ss_pred C
Confidence 5
No 79
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=93.79 E-value=7.7 Score=38.46 Aligned_cols=82 Identities=26% Similarity=0.424 Sum_probs=48.9
Q ss_pred cccEEEEeeE-EecCCceEEEcCC-----------------------ceeEEEEeeEEcCCceEEEeccCCCCCCCCEEE
Q 041224 208 SSNVQIRDCT-IATGDDCVAIGTD-----------------------TSNIAVTGVICGPGHGISIGSLGANGGTSIVED 263 (400)
Q Consensus 208 s~nV~I~n~~-i~~~dD~i~i~s~-----------------------~~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~n 263 (400)
|=|..++|+. |+..-|++.+.+. -.|-.|+|+...++.|+.+|-.| ..+.++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG---~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDG---KGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEEC---CS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecC---CCceEee
Confidence 4567777776 4556788888763 25778888888888888776654 4678888
Q ss_pred EEEEeeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecCC
Q 041224 264 VHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSD 304 (400)
Q Consensus 264 i~v~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~ 304 (400)
|++++|. ..|+.+... +-.|.||++-++.
T Consensus 340 i~~~d~~----g~G~~~~~~--------~~~ftNitvId~N 368 (549)
T PF09251_consen 340 ITVQDCA----GAGIFIRGT--------NKVFTNITVIDTN 368 (549)
T ss_dssp EEEES-S----SESEEEECC--------S-EEEEEEEES-S
T ss_pred EEeeccc----CCceEEeec--------CCceeeeEEEecc
Confidence 8888872 346665543 3357777776543
No 80
>PLN02480 Probable pectinesterase
Probab=92.56 E-value=2.9 Score=40.79 Aligned_cols=112 Identities=7% Similarity=0.056 Sum_probs=74.2
Q ss_pred eecceEEeceEEECCCC---C--CCCCeeee-cCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccC
Q 041224 180 GCNDVSISNLKIIAPES---S--PNTDGIDI-THSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLG 253 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~---~--~n~DGi~i-~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g 253 (400)
..++++++|++|.|... . ...-++-+ ..++++.+.||.+....|-+-... ..-+++||++.+.-.+-+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 45789999999998621 0 11234444 346899999999999888776543 46789999998777777764
Q ss_pred CCCCCCCEEEEEEEeeEEeCCcc-----eEEEEeecCCCeeEEeEEEEeEEEecC
Q 041224 254 ANGGTSIVEDVHVRDCTFKGTKN-----GARIKTWQGGSGHARRISFERIRLESS 303 (400)
Q Consensus 254 ~~~~~~~i~ni~v~N~~~~~~~~-----gi~i~~~~~~~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++.-... .-.|..+......-....|.|+++...
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEccc
Confidence 357889998875321 112433321112234577999998763
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.09 E-value=0.32 Score=32.08 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=18.7
Q ss_pred EEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEe
Q 041224 176 ISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIA 219 (400)
Q Consensus 176 i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~ 219 (400)
|.+..+.+.+|++.++.. +.|||.+..|.+-+|+++.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 344444444555555544 234555555555555544443
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.07 E-value=0.49 Score=31.16 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=24.3
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEE
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVIC 241 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~ 241 (400)
||.++.|.+.+|+++.+....++|.+.. +.+-+++++++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEE
Confidence 4666666666677777776666776665 34555555544
No 83
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=89.90 E-value=15 Score=33.35 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=73.4
Q ss_pred cEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCCCCCCeeeecCcc-cEEEEeeEEecCCceEEEcCCceeEEEEe
Q 041224 160 NLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSS-NVQIRDCTIATGDDCVAIGTDTSNIAVTG 238 (400)
Q Consensus 160 nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~-nV~I~n~~i~~~dD~i~i~s~~~ni~i~n 238 (400)
..+++++.|-.+...+||-.. +.+|+||....- ..|.+.+.+.. .++|.+.-.++.+|=|-=..+.-.+.|+|
T Consensus 62 GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~n 135 (215)
T PF03211_consen 62 GATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIKN 135 (215)
T ss_dssp TEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEEE
T ss_pred CCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEEe
Confidence 456666666555556666655 566666666552 24566666555 67777777777655443333456788888
Q ss_pred eEEcCCceEEEeccCCCCCC-CCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEeEEEEe
Q 041224 239 VICGPGHGISIGSLGANGGT-SIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFER 297 (400)
Q Consensus 239 ~~~~~~~gi~igs~g~~~~~-~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~n 297 (400)
.+.. ..|--+.|.|.-... +.-|++.+++........-..|....+....|+++....
T Consensus 136 F~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 136 FYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp EEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred EEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 5443 335444555432222 355777777766544333345556667778788777766
No 84
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=89.59 E-value=17 Score=35.98 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=60.0
Q ss_pred EEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecC-CceEEEcCCceeEEEEeeEEcCCc-eEEEeccCCC
Q 041224 178 VYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATG-DDCVAIGTDTSNIAVTGVICGPGH-GISIGSLGAN 255 (400)
Q Consensus 178 ~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~-dD~i~i~s~~~ni~i~n~~~~~~~-gi~igs~g~~ 255 (400)
+..-.+|++.|+.+...+ ..-|+-+.+..++++.+|.+.+- .-|+... ....|++|+|.+.. |+.-
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~------ 184 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVS------ 184 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeec------
Confidence 344568899999998754 24467777889999999999984 3344444 46789999997543 5532
Q ss_pred CCCCCEEEEEEEeeEEeCCcceE
Q 041224 256 GGTSIVEDVHVRDCTFKGTKNGA 278 (400)
Q Consensus 256 ~~~~~i~ni~v~N~~~~~~~~gi 278 (400)
.+...+.|++|.|+...-|+
T Consensus 185 ---~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 ---RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred ---CCcceEEeeheeeeheEEEE
Confidence 34466778888887654444
No 85
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=88.52 E-value=12 Score=39.32 Aligned_cols=112 Identities=9% Similarity=0.057 Sum_probs=73.1
Q ss_pred EeecceEEeceEEECCCCCCCCC--eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTD--GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANG 256 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~D--Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (400)
...+++..+|++|.|.......- .+.+ .+....+.||.|....|-+..++ ..-.+++|++.+.-.+-+|.
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~----- 413 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMS-SADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN----- 413 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEE-cCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc-----
Confidence 34578999999998853211222 2333 35888999999999888776655 34578999998877777765
Q ss_pred CCCCEEEEEEEeeEEeCCcc----eEEEEeecCC--CeeEEeEEEEeEEEecCC
Q 041224 257 GTSIVEDVHVRDCTFKGTKN----GARIKTWQGG--SGHARRISFERIRLESSD 304 (400)
Q Consensus 257 ~~~~i~ni~v~N~~~~~~~~----gi~i~~~~~~--~g~i~nI~f~ni~~~~~~ 304 (400)
-.+.|+||.+.-... .-.|... ++ ...-..+.|.|+++....
T Consensus 414 -----a~avfq~c~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 414 -----SAVVFQNCNILPRRPMKGQQNTITAQ-GRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred -----ceEEEeccEEEEecCCCCCCceEEec-CCCCCCCCceEEEEccEEecCC
Confidence 347888888864211 1233332 21 133356889999998643
No 86
>PLN02176 putative pectinesterase
Probab=88.41 E-value=9.6 Score=37.19 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=73.4
Q ss_pred eecceEEeceEEECCCCC------CCCC--eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEec
Q 041224 180 GCNDVSISNLKIIAPESS------PNTD--GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGS 251 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~------~n~D--Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs 251 (400)
..+++..+|++|.|.... .... .+.+. .+...+.+|.|....|-+.... ..-++++|++.+.-.+-+|.
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~-gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~ 196 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARML-GDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGY 196 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEec-CccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecC
Confidence 578999999999985321 1112 23333 5889999999999888776654 46789999998877777764
Q ss_pred cCCCCCCCCEEEEEEEeeEEeCCc-------ceEEEEeecCCC--eeEEeEEEEeEEEecC
Q 041224 252 LGANGGTSIVEDVHVRDCTFKGTK-------NGARIKTWQGGS--GHARRISFERIRLESS 303 (400)
Q Consensus 252 ~g~~~~~~~i~ni~v~N~~~~~~~-------~gi~i~~~~~~~--g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++.-.. ..-.|... ++. ..-....|.|+++...
T Consensus 197 ----------a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~-~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 197 ----------AQSIFEGCTLKLTLGIYPPNEPYGTITAQ-GRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred ----------ceEEEeccEEEEecccCCCCCCcEEEEeC-CCCCCCCCcEEEEECCEEccC
Confidence 34789999887321 11223322 211 2234678999999864
No 87
>PLN02665 pectinesterase family protein
Probab=88.33 E-value=9.6 Score=37.58 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=75.4
Q ss_pred EEeecceEEeceEEECCCCC--C-----CCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEe
Q 041224 178 VYGCNDVSISNLKIIAPESS--P-----NTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIG 250 (400)
Q Consensus 178 ~~~~~nv~i~~~~I~~~~~~--~-----n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~ig 250 (400)
...++++..+|++|.|.... . -.-.+.+. .+...+.||.+....|-+.... ..-.+++|++.+.-.+-+|
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~-gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG 226 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRIS-GDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFG 226 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEc-CCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceecc
Confidence 34578999999999985321 0 12234444 4889999999999888876554 4678999999887777776
Q ss_pred ccCCCCCCCCEEEEEEEeeEEeCCcce--EEEEeecCCC-eeEEeEEEEeEEEecCC
Q 041224 251 SLGANGGTSIVEDVHVRDCTFKGTKNG--ARIKTWQGGS-GHARRISFERIRLESSD 304 (400)
Q Consensus 251 s~g~~~~~~~i~ni~v~N~~~~~~~~g--i~i~~~~~~~-g~i~nI~f~ni~~~~~~ 304 (400)
. -...|++|++.-...+ -.|....... ..-....|.|++++...
T Consensus 227 ~----------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 227 S----------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred c----------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 5 2367888888754333 2333321111 12345679999998754
No 88
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=87.66 E-value=12 Score=38.74 Aligned_cols=113 Identities=10% Similarity=0.166 Sum_probs=76.5
Q ss_pred EEeecceEEeceEEECCCCCCCCC--eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCC
Q 041224 178 VYGCNDVSISNLKIIAPESSPNTD--GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGAN 255 (400)
Q Consensus 178 ~~~~~nv~i~~~~I~~~~~~~n~D--Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 255 (400)
....+++..+|++|.|.......- .+.+. +....+.+|.|....|-+...+ ..-.+++|++.+.-.+-+|.
T Consensus 309 ~v~~~~F~a~nitf~Ntag~~~~QAVALrv~-gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~---- 381 (529)
T PLN02170 309 AAMGDGFIARDITFVNSAGPNSEQAVALRVG-SDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGN---- 381 (529)
T ss_pred EEEcCCeEEEeeEEEecCCCCCCceEEEEec-CCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceeccc----
Confidence 345688999999999864322222 34444 5889999999999988877665 34588999999887877764
Q ss_pred CCCCCEEEEEEEeeEEeCCcc---eEEEEeecCC--CeeEEeEEEEeEEEecCC
Q 041224 256 GGTSIVEDVHVRDCTFKGTKN---GARIKTWQGG--SGHARRISFERIRLESSD 304 (400)
Q Consensus 256 ~~~~~i~ni~v~N~~~~~~~~---gi~i~~~~~~--~g~i~nI~f~ni~~~~~~ 304 (400)
-...|+||++.-... .-.|... ++ ...-....|.|+++....
T Consensus 382 ------a~avFq~C~I~~~~~~~~~g~ITAq-~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 382 ------SAVVFQSCNIAARKPSGDRNYVTAQ-GRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred ------ceEEEeccEEEEecCCCCceEEEec-CCCCCCCCceEEEEeeEEecCC
Confidence 347888898875321 2334332 21 123356789999998743
No 89
>PLN02634 probable pectinesterase
Probab=87.65 E-value=9.4 Score=37.47 Aligned_cols=110 Identities=11% Similarity=0.167 Sum_probs=72.3
Q ss_pred eecceEEeceEEECCCCC-----CC--CCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEecc
Q 041224 180 GCNDVSISNLKIIAPESS-----PN--TDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSL 252 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~-----~n--~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~ 252 (400)
..+++..+|++|.|.... .+ .-.+.+. ..+..+.+|.|....|-+.... ..-.++||++.+.-.+-+|.
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~-gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~- 222 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRIS-GDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGN- 222 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEec-CCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCC-
Confidence 457888888888875311 11 1234444 5889999999999888876554 46789999998877777765
Q ss_pred CCCCCCCCEEEEEEEeeEEeCCcce-EEEEeecCC--CeeEEeEEEEeEEEecC
Q 041224 253 GANGGTSIVEDVHVRDCTFKGTKNG-ARIKTWQGG--SGHARRISFERIRLESS 303 (400)
Q Consensus 253 g~~~~~~~i~ni~v~N~~~~~~~~g-i~i~~~~~~--~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++...... -.|... ++ ...-....|.|+++...
T Consensus 223 ---------g~a~Fe~C~I~s~~~~~g~ITA~-~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 223 ---------GRSMYKDCELHSIASRFGSIAAH-GRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred ---------ceEEEeccEEEEecCCCcEEEeC-CCCCCCCCcEEEEEcCEEcCC
Confidence 2367888888753221 123322 21 12234678999999864
No 90
>PLN02916 pectinesterase family protein
Probab=87.52 E-value=12 Score=38.40 Aligned_cols=114 Identities=11% Similarity=0.118 Sum_probs=75.2
Q ss_pred EeecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG 257 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (400)
...+++..+|++|.|.......-.+-+. .+....+.+|.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 274 v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 345 (502)
T PLN02916 274 VSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGD------ 345 (502)
T ss_pred EECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccC------
Confidence 3457889999999985432222233322 35889999999999988877765 34688999998887877765
Q ss_pred CCCEEEEEEEeeEEeCCc----ceEEEEeecC-CCeeEEeEEEEeEEEecCC
Q 041224 258 TSIVEDVHVRDCTFKGTK----NGARIKTWQG-GSGHARRISFERIRLESSD 304 (400)
Q Consensus 258 ~~~i~ni~v~N~~~~~~~----~gi~i~~~~~-~~g~i~nI~f~ni~~~~~~ 304 (400)
-...|+||.+.-.. ..-.|..... ....-..+.|.|+++....
T Consensus 346 ----a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 346 ----AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred ----ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 34788888886432 1223433211 1133357889999998743
No 91
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=86.84 E-value=6 Score=37.95 Aligned_cols=111 Identities=9% Similarity=0.193 Sum_probs=66.0
Q ss_pred eecceEEeceEEECCCCC--CCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224 180 GCNDVSISNLKIIAPESS--PNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG 257 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~--~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (400)
..+++.++|++|.|.... ...-.+.+. ++++.+.+|.|....|-+...+ ....++||++.+.-.+-+|..
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~--~r~y~~~c~IeG~vDFIfG~~----- 156 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANG--GRQYFKNCYIEGNVDFIFGNG----- 156 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-S--SEEEEES-EEEESEEEEEESS-----
T ss_pred cccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeecc--ceeEEEeeEEEecCcEEECCe-----
Confidence 468999999999984311 112344544 4789999999999988887765 467899999998878888752
Q ss_pred CCCEEEEEEEeeEEeCCc----ceEEEEeecC-CCeeEEeEEEEeEEEecC
Q 041224 258 TSIVEDVHVRDCTFKGTK----NGARIKTWQG-GSGHARRISFERIRLESS 303 (400)
Q Consensus 258 ~~~i~ni~v~N~~~~~~~----~gi~i~~~~~-~~g~i~nI~f~ni~~~~~ 303 (400)
...|+||++.-.. ....|..... ....-....|.|+++...
T Consensus 157 -----~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 157 -----TAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp -----EEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred -----eEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 3578888888432 1234433211 112235678999999864
No 92
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=86.74 E-value=14 Score=36.99 Aligned_cols=115 Identities=15% Similarity=0.096 Sum_probs=73.7
Q ss_pred EEeecceEEeceEEECCCCC----CCCC--eeeecCcccEEEEeeEEecCCceEEEcCC----------ceeEEEEeeEE
Q 041224 178 VYGCNDVSISNLKIIAPESS----PNTD--GIDITHSSNVQIRDCTIATGDDCVAIGTD----------TSNIAVTGVIC 241 (400)
Q Consensus 178 ~~~~~nv~i~~~~I~~~~~~----~n~D--Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~----------~~ni~i~n~~~ 241 (400)
....+++..+|++|.|.... .+.- .+.+. ...+.+.+|.|....|-+..... ...-.+++|++
T Consensus 202 ~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~-GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyI 280 (422)
T PRK10531 202 WSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTD-GDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYI 280 (422)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEc-CCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEE
Confidence 34678999999999985321 1111 23333 58899999999998888766321 12578999999
Q ss_pred cCCceEEEeccCCCCCCCCEEEEEEEeeEEeCCcc----eEEEEeecCCCeeEEeEEEEeEEEecC
Q 041224 242 GPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKN----GARIKTWQGGSGHARRISFERIRLESS 303 (400)
Q Consensus 242 ~~~~gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~----gi~i~~~~~~~g~i~nI~f~ni~~~~~ 303 (400)
.+.-.+-+|. -...|+||++..... .-.|.........-....|.|+++...
T Consensus 281 eG~VDFIFG~----------g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 281 EGDVDFVFGR----------GAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred eecccEEccC----------ceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 8777777765 246788888865321 123332211112334578999999874
No 93
>PLN02671 pectinesterase
Probab=86.66 E-value=9.9 Score=37.36 Aligned_cols=111 Identities=9% Similarity=0.116 Sum_probs=71.5
Q ss_pred eecceEEeceEEECCCC----CCC--CCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccC
Q 041224 180 GCNDVSISNLKIIAPES----SPN--TDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLG 253 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~----~~n--~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g 253 (400)
..+++..+|++|.|... ... .-.+.+. ..++.+.||.|....|-+-... ..-+++||++.+.-.+-+|.
T Consensus 152 ~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~-gDra~f~~c~f~G~QDTLy~~~--gR~yf~~CyIeG~VDFIFG~-- 226 (359)
T PLN02671 152 ESDYFCATGITFENTVVAEPGGQGMQAVALRIS-GDKAFFYKVRVLGAQDTLLDET--GSHYFYQCYIQGSVDFIFGN-- 226 (359)
T ss_pred ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEc-CccEEEEcceEeccccccEeCC--CcEEEEecEEEEeccEEecc--
Confidence 45778888888887521 111 2234444 4889999999999888776554 35689999998777777764
Q ss_pred CCCCCCCEEEEEEEeeEEeCCcc-eEEEEeecC-CCeeEEeEEEEeEEEecC
Q 041224 254 ANGGTSIVEDVHVRDCTFKGTKN-GARIKTWQG-GSGHARRISFERIRLESS 303 (400)
Q Consensus 254 ~~~~~~~i~ni~v~N~~~~~~~~-gi~i~~~~~-~~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++..... .-.|..... ....-....|.|+++...
T Consensus 227 --------g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 227 --------AKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred --------eeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccC
Confidence 247888888874321 123433211 112234678999999763
No 94
>PLN02432 putative pectinesterase
Probab=86.58 E-value=12 Score=35.73 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=73.2
Q ss_pred EeecceEEeceEEECCCCC-CCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224 179 YGCNDVSISNLKIIAPESS-PNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG 257 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~-~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (400)
...+++.++|++|.|.... ...-.+.+. ..+..+.+|.|....|-+-... ..-.++||.+.+.-.+-+|.
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~-gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~------ 161 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVA-GDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGN------ 161 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEc-CCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecC------
Confidence 3457899999999985321 112233433 5889999999999888876654 35689999998877777765
Q ss_pred CCCEEEEEEEeeEEeCCc--ceEEEEeecC-CCeeEEeEEEEeEEEec
Q 041224 258 TSIVEDVHVRDCTFKGTK--NGARIKTWQG-GSGHARRISFERIRLES 302 (400)
Q Consensus 258 ~~~i~ni~v~N~~~~~~~--~gi~i~~~~~-~~g~i~nI~f~ni~~~~ 302 (400)
-...|++|.+.-.. .| .|..+.. ....-....|.|+++..
T Consensus 162 ----g~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 162 ----AASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred ----ceEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEcc
Confidence 23788888886421 23 3433321 11223457899999985
No 95
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=86.34 E-value=3 Score=39.12 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=50.7
Q ss_pred eeecCcccEEEEeeEEecC----------Cc-eEEEcCCceeEEEEeeEEcCCceEEEecc---CCCCCCCCEEEEEEEe
Q 041224 203 IDITHSSNVQIRDCTIATG----------DD-CVAIGTDTSNIAVTGVICGPGHGISIGSL---GANGGTSIVEDVHVRD 268 (400)
Q Consensus 203 i~i~~s~nV~I~n~~i~~~----------dD-~i~i~s~~~ni~i~n~~~~~~~gi~igs~---g~~~~~~~i~ni~v~N 268 (400)
+++...++..|+|....+= |. .+++++ |.|..|+|+.+.++.|+-||-. |.+ -.--.|....|
T Consensus 262 vhvengkhfvirnvkaknitpdfskkagidnatvaiyg-cdnfvidni~mvnsagmligygvikg~y--lsipqnfkln~ 338 (464)
T PRK10123 262 IHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYG-CDNFVIDNIEMINSAGMLIGYGVIKGKY--LSIPQNFKLNN 338 (464)
T ss_pred EEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEc-ccceEEeccccccccccEEEeeeeeccE--ecccccceece
Confidence 4556666666666665541 11 244544 8888888888877777666531 111 12234556666
Q ss_pred eEEeCCc-----ceEEEEeecCCCeeEEeEEEEeEEEec
Q 041224 269 CTFKGTK-----NGARIKTWQGGSGHARRISFERIRLES 302 (400)
Q Consensus 269 ~~~~~~~-----~gi~i~~~~~~~g~i~nI~f~ni~~~~ 302 (400)
+.+.+.. +|+.|.+- ...+=|.+.|+.|+.
T Consensus 339 i~ldn~~l~yklrgiqissg----natsfvaitn~~mkr 373 (464)
T PRK10123 339 IQLDNTHLAYKLRGIQISAG----NAVSFVALTNIEMKR 373 (464)
T ss_pred EeecccccceeeeeeEeccC----CcceEEEEeeeehhh
Confidence 6666543 46666552 223334455555543
No 96
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=86.31 E-value=9.9 Score=39.53 Aligned_cols=112 Identities=8% Similarity=0.087 Sum_probs=75.4
Q ss_pred EEeecceEEeceEEECCCCCCC--CCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCC
Q 041224 178 VYGCNDVSISNLKIIAPESSPN--TDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGAN 255 (400)
Q Consensus 178 ~~~~~nv~i~~~~I~~~~~~~n--~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 255 (400)
....+++..+|++|.|.....+ .-.+.+. +.++.+.+|.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~-~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~---- 387 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVD-SDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGN---- 387 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccC----
Confidence 3466889999999998642222 2234443 5889999999999888876665 34599999999887887765
Q ss_pred CCCCCEEEEEEEeeEEeCCcc----eEEEEeecCC--CeeEEeEEEEeEEEecC
Q 041224 256 GGTSIVEDVHVRDCTFKGTKN----GARIKTWQGG--SGHARRISFERIRLESS 303 (400)
Q Consensus 256 ~~~~~i~ni~v~N~~~~~~~~----gi~i~~~~~~--~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++.-... .-.|... ++ ...-..+.|.|+++...
T Consensus 388 ------a~avfq~C~i~~r~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 388 ------GAAVLQNCKIYTRVPLPLQKVTITAQ-GRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred ------ceeEEeccEEEEccCCCCCCceEEcc-CCCCCCCCcEEEEEcCEEccC
Confidence 347888998875321 1234332 21 12234677999998863
No 97
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=85.85 E-value=10 Score=36.61 Aligned_cols=111 Identities=10% Similarity=0.076 Sum_probs=54.5
Q ss_pred EEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCC
Q 041224 118 LLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESS 197 (400)
Q Consensus 118 i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~ 197 (400)
|.+.+..++.|+| -+|.|...- . ...|...|++.++.+..|.+-.|.- ...+|..+.++...+++.+++.-
T Consensus 123 i~l~~s~d~~i~~-n~i~G~~~~-r---~~~rGnGI~vyNa~~a~V~~ndisy-~rDgIy~~~S~~~~~~gnr~~~~--- 193 (408)
T COG3420 123 IYLHGSADVRIEG-NTIQGLADL-R---VAERGNGIYVYNAPGALVVGNDISY-GRDGIYSDTSQHNVFKGNRFRDL--- 193 (408)
T ss_pred EEEeccCceEEEe-eEEeecccc-c---hhhccCceEEEcCCCcEEEcCcccc-ccceEEEcccccceecccchhhe---
Confidence 6667778888887 344443210 0 0135567777777777776655532 12445555555555555444432
Q ss_pred CCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeE
Q 041224 198 PNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVI 240 (400)
Q Consensus 198 ~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~ 240 (400)
.-|.|...+.+..+++...+...-++++-. ++.+.|+|+.
T Consensus 194 --RygvHyM~t~~s~i~dn~s~~N~vG~ALMy-s~~l~V~~nr 233 (408)
T COG3420 194 --RYGVHYMYTNDSRISDNSSRDNRVGYALMY-SDRLKVSDNR 233 (408)
T ss_pred --eeeEEEEeccCcEeecccccCCcceEEEEE-eccEEEEcCc
Confidence 123444444444444444433333333332 3444444443
No 98
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=85.81 E-value=9.5 Score=40.65 Aligned_cols=111 Identities=10% Similarity=0.124 Sum_probs=74.0
Q ss_pred eecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCC
Q 041224 180 GCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGT 258 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (400)
..+++..+|++|.|.......-.+-+. .+....+.||.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 405 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD------- 405 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC-------
Confidence 467889999999985422222233332 35889999999999888776654 45689999998777777764
Q ss_pred CCEEEEEEEeeEEeCCc----ceEEEEeecCCC--eeEEeEEEEeEEEecC
Q 041224 259 SIVEDVHVRDCTFKGTK----NGARIKTWQGGS--GHARRISFERIRLESS 303 (400)
Q Consensus 259 ~~i~ni~v~N~~~~~~~----~gi~i~~~~~~~--g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++.-.. ..-.|... ++. ..-..+.|.|+++...
T Consensus 406 ---a~avfq~C~I~~r~~~~~~~~~ITAq-gr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 406 ---AAAVFQNCTLLVRKPLLNQACPITAH-GRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred ---ceEEEEccEEEEccCCCCCceeEecC-CCCCCCCCceEEEEeeEEecC
Confidence 34788999887431 12234332 221 2345688999999875
No 99
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=85.72 E-value=13 Score=38.98 Aligned_cols=111 Identities=8% Similarity=0.095 Sum_probs=71.4
Q ss_pred eecceEEeceEEECCCCCCCCCeeee-cCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCC
Q 041224 180 GCNDVSISNLKIIAPESSPNTDGIDI-THSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGT 258 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~~n~DGi~i-~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (400)
..+++..+|++|.|.......-.+.+ ..+....+.+|.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 408 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGN------- 408 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceeccc-------
Confidence 45788999999988532222222322 135788899999999888777665 34588999998777777765
Q ss_pred CCEEEEEEEeeEEeCCcc----eEEEEeecCC--CeeEEeEEEEeEEEecC
Q 041224 259 SIVEDVHVRDCTFKGTKN----GARIKTWQGG--SGHARRISFERIRLESS 303 (400)
Q Consensus 259 ~~i~ni~v~N~~~~~~~~----gi~i~~~~~~--~g~i~nI~f~ni~~~~~ 303 (400)
-.+.|+||.+.-... .-.|... ++ ...-..+.|.|+++...
T Consensus 409 ---a~avfq~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 ---AAVVFQNCNLYPRLPMQGQFNTITAQ-GRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred ---ceEEEeccEEEEecCCCCCcceeeec-CCCCCCCCCEEEEEcCEEecC
Confidence 347888888864311 1123332 21 12235678999998764
No 100
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=85.60 E-value=31 Score=32.10 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=55.2
Q ss_pred EEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEec-CCceEEEcCCceeEEEEeeEEcCCceEEEeccCC
Q 041224 176 ISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIAT-GDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGA 254 (400)
Q Consensus 176 i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~-~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~ 254 (400)
+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.. ..++|.+.. +.
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g---------------------~~-- 145 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVTG---------------------TS-- 145 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEEe---------------------ee--
Confidence 444556788888888888631 13446666654 66666666665 233332211 10
Q ss_pred CCCCCCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecCCccEEEE
Q 041224 255 NGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIID 310 (400)
Q Consensus 255 ~~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~ 310 (400)
....+.+++|+++.+.....|+.+..... + +.| .++|..+++-..+|.+.
T Consensus 146 --~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~--~-~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 146 --ANPGINGNVISGNSIYFNKTGISISDNAA--P-VEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred --cCCcccceEeecceEEecCcCeEEEcccC--C-ccc-eeeccEEEeCCcCeEee
Confidence 02355666677777766666776654322 2 222 22445555444455543
No 101
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=85.25 E-value=23 Score=36.45 Aligned_cols=113 Identities=8% Similarity=0.066 Sum_probs=76.1
Q ss_pred eecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCC
Q 041224 180 GCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGT 258 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (400)
..+++..+|++|.|.........+.+. .+....+.+|.|....|-+...+ ..-.+++|++.+.-.+-+|.
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~------- 352 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN------- 352 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc-------
Confidence 457888999999985422222333332 35889999999999888876655 45689999999887877765
Q ss_pred CCEEEEEEEeeEEeCCcc----eEEEEeecCC-CeeEEeEEEEeEEEecCC
Q 041224 259 SIVEDVHVRDCTFKGTKN----GARIKTWQGG-SGHARRISFERIRLESSD 304 (400)
Q Consensus 259 ~~i~ni~v~N~~~~~~~~----gi~i~~~~~~-~g~i~nI~f~ni~~~~~~ 304 (400)
-...|+||++.-... .-.|...... ...-..+.|.|+++....
T Consensus 353 ---a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 ---AAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ---eEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 458899999975321 1234433211 122346889999998754
No 102
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=85.17 E-value=16 Score=37.67 Aligned_cols=142 Identities=10% Similarity=0.111 Sum_probs=76.0
Q ss_pred EeeeCcEEEEceEEeCCCCc----eEEEE-eecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcC
Q 041224 155 FGSCNNLVFRGLTHVDSPGN----HISVY-GCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGT 229 (400)
Q Consensus 155 ~~~~~nv~i~~v~i~ns~~~----~i~~~-~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s 229 (400)
....+++..++++|+|.... .+.+. ..+...+.+|.|....+ -+.... .+-.+++|+|...=|-| ++
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QD-----TLy~~~-~rqyy~~C~I~G~vDFI-FG- 337 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQD-----TLYAAA-LRQFYRECDIYGTIDFI-FG- 337 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccc-----hheeCC-CcEEEEeeEEEeccceE-ec-
Confidence 34578888899999887432 22222 46778888888887543 233332 34577888888765554 22
Q ss_pred CceeEEEEeeEEcCC---ce--EEEeccCCCCCCCCEEEEEEEeeEEeCCcceEE----EEeecCCC-eeEEeEEEEeEE
Q 041224 230 DTSNIAVTGVICGPG---HG--ISIGSLGANGGTSIVEDVHVRDCTFKGTKNGAR----IKTWQGGS-GHARRISFERIR 299 (400)
Q Consensus 230 ~~~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~----i~~~~~~~-g~i~nI~f~ni~ 299 (400)
.....++||.+..- .+ -.|=..+. .....-..+.|+||++.+...... .+.+=|+. ..-..+.|.+..
T Consensus 338 -~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s~ 415 (497)
T PLN02698 338 -NAAAVFQNCYLFLRRPHGKSYNVILANGR-SDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMESY 415 (497)
T ss_pred -ccceeecccEEEEecCCCCCceEEEecCC-CCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEecc
Confidence 34567888877521 11 01111111 112334568888888876532110 11222222 334566676666
Q ss_pred EecCCcc
Q 041224 300 LESSDNP 306 (400)
Q Consensus 300 ~~~~~~~ 306 (400)
|.+.=.|
T Consensus 416 l~~~I~p 422 (497)
T PLN02698 416 IDDAIAE 422 (497)
T ss_pred cCCcccC
Confidence 6654333
No 103
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=85.00 E-value=22 Score=36.86 Aligned_cols=113 Identities=8% Similarity=0.091 Sum_probs=72.2
Q ss_pred EeecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG 257 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (400)
...+++..+|++|.|.......-.+.+. .+....+.+|.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 361 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGD------ 361 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecC------
Confidence 4567888999999885422222233322 35788999999999888777665 33577999998777777765
Q ss_pred CCCEEEEEEEeeEEeCCc----ceEEEEeecC-CCeeEEeEEEEeEEEecC
Q 041224 258 TSIVEDVHVRDCTFKGTK----NGARIKTWQG-GSGHARRISFERIRLESS 303 (400)
Q Consensus 258 ~~~i~ni~v~N~~~~~~~----~gi~i~~~~~-~~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++.-.. ..-.|..... ....-....|.|+++...
T Consensus 362 ----a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 362 ----ATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred ----ceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 34788888887421 1123333211 112334678999998764
No 104
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=84.85 E-value=15 Score=37.98 Aligned_cols=113 Identities=10% Similarity=0.127 Sum_probs=70.9
Q ss_pred EeecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG 257 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (400)
...+++..+|++|.|.......-.+.+. .+....+.+|.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 302 v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~IeGtVDFIFG~------ 373 (530)
T PLN02933 302 VKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS--AKQFYRECDIYGTIDFIFGN------ 373 (530)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC--CceEEEeeEEecccceeccC------
Confidence 3557888889999885322122233332 35788999999998888776655 24588999998777777765
Q ss_pred CCCEEEEEEEeeEEeCCc----ceEEEEeecC-CCeeEEeEEEEeEEEecC
Q 041224 258 TSIVEDVHVRDCTFKGTK----NGARIKTWQG-GSGHARRISFERIRLESS 303 (400)
Q Consensus 258 ~~~i~ni~v~N~~~~~~~----~gi~i~~~~~-~~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||.+.-.. ..-.|..... ....-..+.|.|+++...
T Consensus 374 ----a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 374 ----AAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred ----ceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 23678888886421 1122332211 112234678999998864
No 105
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=84.71 E-value=15 Score=38.27 Aligned_cols=111 Identities=11% Similarity=0.155 Sum_probs=74.6
Q ss_pred EeecceEEeceEEECCCCCCCCCe--eeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTDG--IDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANG 256 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~DG--i~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (400)
...+++..+|++|.|.......-. +.+. +....+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|.
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 391 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVS-ADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGN----- 391 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEec-CCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceeccc-----
Confidence 356789999999998532112222 3333 5889999999999988877765 34599999999877777765
Q ss_pred CCCCEEEEEEEeeEEeCCcc----eEEEEeecCC--CeeEEeEEEEeEEEecC
Q 041224 257 GTSIVEDVHVRDCTFKGTKN----GARIKTWQGG--SGHARRISFERIRLESS 303 (400)
Q Consensus 257 ~~~~i~ni~v~N~~~~~~~~----gi~i~~~~~~--~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++.-... .-.|... ++ ...-..+.|.|+++...
T Consensus 392 -----a~avfq~c~i~~~~~~~~~~~~iTAq-gr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 392 -----AAVVFQNCKIVARKPMAGQKNMVTAQ-GRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred -----ceeEEeccEEEEecCCCCCCceEEec-CCCCCCCCCEEEEEeeEEecC
Confidence 347888888865321 1133332 22 12345788999999864
No 106
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=84.68 E-value=22 Score=37.03 Aligned_cols=113 Identities=8% Similarity=0.116 Sum_probs=75.3
Q ss_pred EEeecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCC
Q 041224 178 VYGCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANG 256 (400)
Q Consensus 178 ~~~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (400)
....+++..+|++|.|.......-.+.+. .+....+.+|.|....|-+...+ ..-+++||++.+.-.+-+|.
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~----- 381 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGN----- 381 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeec-----
Confidence 33558899999999985422222333332 35789999999999988776665 34689999999887887775
Q ss_pred CCCCEEEEEEEeeEEeCCc----ceEEEEeecCC--CeeEEeEEEEeEEEecC
Q 041224 257 GTSIVEDVHVRDCTFKGTK----NGARIKTWQGG--SGHARRISFERIRLESS 303 (400)
Q Consensus 257 ~~~~i~ni~v~N~~~~~~~----~gi~i~~~~~~--~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++.-.. ..-.|... ++ ...-..+.|.|+++...
T Consensus 382 -----a~avfq~c~i~~r~~~~~~~~~iTA~-~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 382 -----AAAIFQNCNLYARKPMANQKNAFTAQ-GRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred -----ceeeeeccEEEEecCCCCCCceEEec-CCCCCCCCceEEEEecEEecC
Confidence 34789999886521 11223332 21 12234688999999864
No 107
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=84.28 E-value=19 Score=37.95 Aligned_cols=112 Identities=10% Similarity=0.114 Sum_probs=75.5
Q ss_pred EeecceEEeceEEECCCCCCCCC--eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTD--GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANG 256 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~D--Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (400)
...+++..+|++|.|.......- .+.+. +....+.||.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~-~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 440 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQ-SDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD----- 440 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc-----
Confidence 35688999999999853211222 33333 5899999999999888776654 45799999999877777765
Q ss_pred CCCCEEEEEEEeeEEeCCcc----eEEEEeecCC--CeeEEeEEEEeEEEecCC
Q 041224 257 GTSIVEDVHVRDCTFKGTKN----GARIKTWQGG--SGHARRISFERIRLESSD 304 (400)
Q Consensus 257 ~~~~i~ni~v~N~~~~~~~~----gi~i~~~~~~--~g~i~nI~f~ni~~~~~~ 304 (400)
-...|+||.+.-... .-.|... ++ ...-..+.|.|+++....
T Consensus 441 -----a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 441 -----AAAIFQNCLIFVRKPLPNQQNTVTAQ-GRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred -----eeEEEEecEEEEecCCCCCCceEEec-CCCCCCCCceEEEEeeEEecCc
Confidence 457888998874311 1234332 21 123457889999998743
No 108
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=82.69 E-value=37 Score=35.07 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=74.9
Q ss_pred EeecceEEeceEEECCCCCCC--CCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPN--TDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANG 256 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n--~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (400)
...+++..+|++|.|...... .-.+.+. +.+..+.+|.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~-~D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG~----- 338 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSIT-SDHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFGN----- 338 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEec-CCcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEecc-----
Confidence 356889999999998532212 2233443 5889999999999988877665 34589999999777877765
Q ss_pred CCCCEEEEEEEeeEEeCCcc--e--EEEEeecCC--CeeEEeEEEEeEEEecCC
Q 041224 257 GTSIVEDVHVRDCTFKGTKN--G--ARIKTWQGG--SGHARRISFERIRLESSD 304 (400)
Q Consensus 257 ~~~~i~ni~v~N~~~~~~~~--g--i~i~~~~~~--~g~i~nI~f~ni~~~~~~ 304 (400)
-...|+||++.-... + -.|... ++ ...-..+.|.|+++....
T Consensus 339 -----a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 339 -----AAAVFQNCYLFLRRPHGKSYNVILAN-GRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred -----cceeecccEEEEecCCCCCceEEEec-CCCCCCCCceEEEEeeEEecCC
Confidence 236888888874221 1 123322 21 123356889999998653
No 109
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=82.30 E-value=19 Score=38.01 Aligned_cols=111 Identities=9% Similarity=0.183 Sum_probs=72.5
Q ss_pred eecceEEeceEEECCCCCCCCC--eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224 180 GCNDVSISNLKIIAPESSPNTD--GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG 257 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~~n~D--Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (400)
..+++..+|++|.|.......- .+.+. +....+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|.
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~-~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~------ 430 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRVG-SDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGN------ 430 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccc------
Confidence 4578888999998853221222 33333 5888999999999888776665 34488999998777777764
Q ss_pred CCCEEEEEEEeeEEeCCcc--e--EEEEeecCC--CeeEEeEEEEeEEEecCC
Q 041224 258 TSIVEDVHVRDCTFKGTKN--G--ARIKTWQGG--SGHARRISFERIRLESSD 304 (400)
Q Consensus 258 ~~~i~ni~v~N~~~~~~~~--g--i~i~~~~~~--~g~i~nI~f~ni~~~~~~ 304 (400)
-...|+||++.-... + -.|... ++ ...-..+.|.|+++....
T Consensus 431 ----a~avfq~c~i~~r~~~~~~~~~iTAq-gr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 431 ----AAAVLQDCDINARRPNSGQKNMVTAQ-GRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ----eeEEEEccEEEEecCCCCCcceEEec-CCCCCCCCceEEEEecEEecCC
Confidence 347889998874311 1 123332 22 123456889999997643
No 110
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=82.20 E-value=21 Score=37.60 Aligned_cols=111 Identities=10% Similarity=0.134 Sum_probs=72.5
Q ss_pred EeecceEEeceEEECCCCCCCCCe--eeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTDG--IDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANG 256 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~DG--i~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (400)
...+++..+|++|.|.......-. +.+. +.+..+.||.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 357 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~-~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 428 (587)
T PLN02484 357 ATGAGFIARDMTFENWAGPAKHQAVALRVG-ADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN----- 428 (587)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEec-CCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc-----
Confidence 356788889999988532212223 3333 5888999999999888776655 34588999998777777765
Q ss_pred CCCCEEEEEEEeeEEeCCc----ceEEEEeecCC--CeeEEeEEEEeEEEecC
Q 041224 257 GTSIVEDVHVRDCTFKGTK----NGARIKTWQGG--SGHARRISFERIRLESS 303 (400)
Q Consensus 257 ~~~~i~ni~v~N~~~~~~~----~gi~i~~~~~~--~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||.+.-.. ..-.|... ++ ...-..+.|.|+++...
T Consensus 429 -----a~avfq~C~i~~~~~~~~~~~~ITAq-~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 429 -----AAVVLQNCSIYARKPMAQQKNTITAQ-NRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred -----ceeEEeccEEEEecCCCCCceEEEec-CCCCCCCCcEEEEEeeEEecC
Confidence 34788888886421 11233332 21 12345688999999764
No 111
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=82.17 E-value=18 Score=37.73 Aligned_cols=111 Identities=10% Similarity=0.107 Sum_probs=67.5
Q ss_pred eecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCC
Q 041224 180 GCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGT 258 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (400)
..+++..+|++|.|.........+-+. .+....+.+|.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 310 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 380 (539)
T PLN02995 310 EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGN------- 380 (539)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEecc-------
Confidence 457788888888875321122223222 24778888888888777665554 34588888888776776764
Q ss_pred CCEEEEEEEeeEEeCCcc----eEEEEeecCC--CeeEEeEEEEeEEEecC
Q 041224 259 SIVEDVHVRDCTFKGTKN----GARIKTWQGG--SGHARRISFERIRLESS 303 (400)
Q Consensus 259 ~~i~ni~v~N~~~~~~~~----gi~i~~~~~~--~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++.-... .-.|... ++ ...-..+.|.|+++...
T Consensus 381 ---a~avf~~C~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 381 ---AAAVFQNCIILPRRPLKGQANVITAQ-GRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred ---cceEEeccEEEEecCCCCCcceEecC-CCCCCCCCceEEEEeeEEecC
Confidence 236777877764311 1233322 21 12335678889988874
No 112
>PLN02314 pectinesterase
Probab=81.81 E-value=20 Score=37.73 Aligned_cols=113 Identities=11% Similarity=0.152 Sum_probs=72.8
Q ss_pred EeecceEEeceEEECCCCCCCCCeeee-cCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTDGIDI-THSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG 257 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~DGi~i-~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (400)
...+++..+|++|.|.......-.+-+ ..+....+.||.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------ 433 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGN------ 433 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccC------
Confidence 356788899999998532112222322 235788999999999888776665 34588999998777777764
Q ss_pred CCCEEEEEEEeeEEeCCc----ceEEEEeecCC--CeeEEeEEEEeEEEecCC
Q 041224 258 TSIVEDVHVRDCTFKGTK----NGARIKTWQGG--SGHARRISFERIRLESSD 304 (400)
Q Consensus 258 ~~~i~ni~v~N~~~~~~~----~gi~i~~~~~~--~g~i~nI~f~ni~~~~~~ 304 (400)
-...|+||.+.-.. ..-.|... ++ ...-..+.|.|+++....
T Consensus 434 ----a~avf~~c~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 ----AAVVFQNCNIQPRQPLPNQFNTITAQ-GKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ----ceeeeeccEEEEecCCCCCCceEecC-CCCCCCCCCEEEEEeeEEecCC
Confidence 34788888886421 11133332 22 133456789999998753
No 113
>PLN02304 probable pectinesterase
Probab=81.72 E-value=35 Score=33.82 Aligned_cols=110 Identities=10% Similarity=0.165 Sum_probs=71.8
Q ss_pred eecceEEeceEEECCCCC--C---CCC--eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEecc
Q 041224 180 GCNDVSISNLKIIAPESS--P---NTD--GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSL 252 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~--~---n~D--Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~ 252 (400)
..+++..+|++|.|.... . ..- .+.+. +....+.+|.|....|-+.... ..-+++||++.+.-.+-+|.
T Consensus 160 ~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~-gDra~fy~C~f~G~QDTLy~~~--gR~Yf~~CyIeG~VDFIFG~- 235 (379)
T PLN02304 160 FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIA-GDQAAFWGCGFFGAQDTLHDDR--GRHYFKDCYIQGSIDFIFGD- 235 (379)
T ss_pred ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEec-CCcEEEEeceEecccceeEeCC--CCEEEEeeEEcccccEEecc-
Confidence 457889999999985311 1 111 23333 5899999999999888876554 45789999999887887765
Q ss_pred CCCCCCCCEEEEEEEeeEEeCCcc---------eEEEEeecC-CCeeEEeEEEEeEEEec
Q 041224 253 GANGGTSIVEDVHVRDCTFKGTKN---------GARIKTWQG-GSGHARRISFERIRLES 302 (400)
Q Consensus 253 g~~~~~~~i~ni~v~N~~~~~~~~---------gi~i~~~~~-~~g~i~nI~f~ni~~~~ 302 (400)
-...|+||.+..... .-.|..... ....-....|.|+++..
T Consensus 236 ---------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 236 ---------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred ---------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEcc
Confidence 246888888874321 113333211 11223456699999876
No 114
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=80.91 E-value=27 Score=30.79 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=7.0
Q ss_pred CEEEEEEEeeEEeCC
Q 041224 260 IVEDVHVRDCTFKGT 274 (400)
Q Consensus 260 ~i~ni~v~N~~~~~~ 274 (400)
..+||+++++.|..+
T Consensus 32 ~a~nVhIhhN~fY~t 46 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDT 46 (198)
T ss_pred ccccEEEECcEeecC
Confidence 334455555555443
No 115
>PLN02773 pectinesterase
Probab=79.50 E-value=44 Score=32.35 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=77.8
Q ss_pred EEeecceEEeceEEECCCCCC--CCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCC
Q 041224 178 VYGCNDVSISNLKIIAPESSP--NTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGAN 255 (400)
Q Consensus 178 ~~~~~nv~i~~~~I~~~~~~~--n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 255 (400)
...++++..+|++|.|..... -.-.+.+. +.++.+.||.|....|-+..+. ..-.++||++.+.-.+-+|+
T Consensus 98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~-gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~---- 170 (317)
T PLN02773 98 IVEGEDFIAENITFENSAPEGSGQAVAIRVT-ADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN---- 170 (317)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCcEEEEEec-CccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec----
Confidence 335789999999999863211 12234444 5889999999999988887764 46899999999887887775
Q ss_pred CCCCCEEEEEEEeeEEeCCcceEEEEeecCCC-eeEEeEEEEeEEEecCC
Q 041224 256 GGTSIVEDVHVRDCTFKGTKNGARIKTWQGGS-GHARRISFERIRLESSD 304 (400)
Q Consensus 256 ~~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~-g~i~nI~f~ni~~~~~~ 304 (400)
-...|++|++.....| .|....... ..-....|.|++++...
T Consensus 171 ------g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 171 ------STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ------cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecCC
Confidence 3478999999765444 343321111 12235789999998753
No 116
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=78.00 E-value=15 Score=38.39 Aligned_cols=111 Identities=12% Similarity=0.136 Sum_probs=72.2
Q ss_pred EeecceEEeceEEECCCCCCCCC--eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTD--GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANG 256 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~D--Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (400)
...+++..+|++|.|.......- .+.+. +.++.+.+|.|....|-+...+ ..-.+++|++.+.-.+-+|.
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~-~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 385 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVN-ADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN----- 385 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEc-CccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc-----
Confidence 34688999999999854322222 33333 5889999999999888766554 45589999998777777765
Q ss_pred CCCCEEEEEEEeeEEeCCcc--e--EEEEeecCC--CeeEEeEEEEeEEEecC
Q 041224 257 GTSIVEDVHVRDCTFKGTKN--G--ARIKTWQGG--SGHARRISFERIRLESS 303 (400)
Q Consensus 257 ~~~~i~ni~v~N~~~~~~~~--g--i~i~~~~~~--~g~i~nI~f~ni~~~~~ 303 (400)
-...|+||++.-... | -.|... ++ ...-....|.|+++...
T Consensus 386 -----a~avfq~c~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 -----AAVVFQACNIVSKMPMPGQFTVITAQ-SRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred -----ceEEEeccEEEEecCCCCCceEEECC-CCCCCCCCCEEEEEeeEEecC
Confidence 347888888865321 1 123222 21 12234678999998754
No 117
>PLN02197 pectinesterase
Probab=77.36 E-value=19 Score=37.91 Aligned_cols=113 Identities=9% Similarity=0.155 Sum_probs=74.5
Q ss_pred EeecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG 257 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (400)
...+++..+|++|.|.......-..-+. .+....+.+|.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 432 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGK------ 432 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccc------
Confidence 3568899999999985321122233332 35889999999999988877765 34589999998777777764
Q ss_pred CCCEEEEEEEeeEEeCCc--ce--EEEEeecCC---CeeEEeEEEEeEEEecCC
Q 041224 258 TSIVEDVHVRDCTFKGTK--NG--ARIKTWQGG---SGHARRISFERIRLESSD 304 (400)
Q Consensus 258 ~~~i~ni~v~N~~~~~~~--~g--i~i~~~~~~---~g~i~nI~f~ni~~~~~~ 304 (400)
....|+||++.-.. .| -.|.. +++ ...-..+.|.|+++....
T Consensus 433 ----a~avfq~C~i~~r~~~~~~~~~iTA-qgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 433 ----SATVIQNSLIVVRKGSKGQYNTVTA-DGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred ----eeeeeecCEEEEecCCCCCceeEEC-CCCCCCCCCCcEEEEEccEEecCC
Confidence 23788999886321 11 23332 222 123356889999998743
No 118
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=75.00 E-value=1.7 Score=22.76 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=10.2
Q ss_pred CchhhhHHHHHHhhhh
Q 041224 1 MRELLIIILILSMAIW 16 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (400)
|+++.+++++|++..+
T Consensus 1 MMk~vIIlvvLLliSf 16 (19)
T PF13956_consen 1 MMKLVIILVVLLLISF 16 (19)
T ss_pred CceehHHHHHHHhccc
Confidence 7777777666655544
No 119
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=70.96 E-value=1.2e+02 Score=30.45 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=31.1
Q ss_pred ceeEEEEeeEEcCC--ceEEEeccCC--CC-------------CCCCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEeE
Q 041224 231 TSNIAVTGVICGPG--HGISIGSLGA--NG-------------GTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRI 293 (400)
Q Consensus 231 ~~ni~i~n~~~~~~--~gi~igs~g~--~~-------------~~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~nI 293 (400)
+-|..++++..-.. +|+-+++... .+ -..--.|=.|+|+...++ .|+-+. +.|.++.|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~-~DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIG-MDGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCE-EECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeee-ecCCCceEeeE
Confidence 35777888765433 4677666411 00 011223445666666654 444333 23566888888
Q ss_pred EEEeEEE
Q 041224 294 SFERIRL 300 (400)
Q Consensus 294 ~f~ni~~ 300 (400)
+.+++.-
T Consensus 341 ~~~d~~g 347 (549)
T PF09251_consen 341 TVQDCAG 347 (549)
T ss_dssp EEES-SS
T ss_pred EeecccC
Confidence 8776643
No 120
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=66.20 E-value=14 Score=33.51 Aligned_cols=69 Identities=10% Similarity=0.190 Sum_probs=38.1
Q ss_pred CchhhhHHHHHHhhhhccccCcc-cccCCCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEe
Q 041224 1 MRELLIIILILSMAIWGSSFQPC-EAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLL 79 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~ 79 (400)
||+.+.+++++|++.++..+... +++.....+|.| +|-+.-++ +|++.-.+..++ ..++|.+--| .|.+
T Consensus 1 mk~~~~~~~~~~~~~f~~~~~~~~~~~~L~DGtYsV-~fkVlK~~-tde~Smmn~Y~~-------kPAkv~VknG-K~~V 70 (217)
T TIGR03656 1 MKKILVFAFFTTILAFIILSAGFSNSANLADGTYTI-NYTVYKAD-NDSASMANDYFE-------KPAKLIVKNG-KMTV 70 (217)
T ss_pred CcchhhHHHHHHHHHHhcccccccccccccCceEEE-EEEEEeCC-CCchhhHHhhcc-------CCcEEEEECC-EEEE
Confidence 88777776666766665322211 122234445544 34444444 455555556652 3568999999 5544
No 121
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=62.73 E-value=1.1e+02 Score=27.07 Aligned_cols=14 Identities=7% Similarity=-0.078 Sum_probs=8.1
Q ss_pred ceeEEEEeeEEcCC
Q 041224 231 TSNIAVTGVICGPG 244 (400)
Q Consensus 231 ~~ni~i~n~~~~~~ 244 (400)
-.|.+|+|.+|.+.
T Consensus 63 F~ntlIENNVfDG~ 76 (198)
T PF08480_consen 63 FYNTLIENNVFDGV 76 (198)
T ss_pred ccccEEEeeeeccc
Confidence 45666666666544
No 122
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=59.16 E-value=1.5e+02 Score=31.31 Aligned_cols=112 Identities=10% Similarity=0.189 Sum_probs=75.8
Q ss_pred eecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCC
Q 041224 180 GCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGT 258 (400)
Q Consensus 180 ~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (400)
..+++..+|++|.|.......-.+-+. .+....+.+|.|....|-+...+ ..-++++|++.+.-.+-+|.
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 415 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD------- 415 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC-------
Confidence 568899999999985422222333332 35889999999999988776655 35688999999887877765
Q ss_pred CCEEEEEEEeeEEeCCcc----eEEEEeecCCC--eeEEeEEEEeEEEecCC
Q 041224 259 SIVEDVHVRDCTFKGTKN----GARIKTWQGGS--GHARRISFERIRLESSD 304 (400)
Q Consensus 259 ~~i~ni~v~N~~~~~~~~----gi~i~~~~~~~--g~i~nI~f~ni~~~~~~ 304 (400)
-...|+||++.-... .-.|... ++. ..-..+.|.|+++....
T Consensus 416 ---a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 ---AKVVLQNCNIVVRKPMKGQSCMITAQ-GRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ---ceEEEEccEEEEecCCCCCceEEEeC-CCCCCCCCceEEEEeeEEecCc
Confidence 347889999874211 1234332 221 22346889999998754
No 123
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=51.64 E-value=21 Score=19.41 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=5.9
Q ss_pred cEEEEeeEEecC
Q 041224 210 NVQIRDCTIATG 221 (400)
Q Consensus 210 nV~I~n~~i~~~ 221 (400)
+++|++|.|+..
T Consensus 3 ~~~i~~n~i~~~ 14 (26)
T smart00710 3 NVTIENNTIRNN 14 (26)
T ss_pred CEEEECCEEEeC
Confidence 445555555443
No 124
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=49.64 E-value=2.7e+02 Score=29.23 Aligned_cols=113 Identities=10% Similarity=0.159 Sum_probs=76.5
Q ss_pred EeecceEEeceEEECCCCCCCCCeeeec-CcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224 179 YGCNDVSISNLKIIAPESSPNTDGIDIT-HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG 257 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~n~DGi~i~-~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (400)
...+++..+|++|.|.......-.+-+. .+..+.+.||.|....|-+...+ ..-.+++|++.+.-.+-+|.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtVDFIFG~------ 398 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS--LRQFYKSCRIQGNVDFIFGN------ 398 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC--CceEEEeeEEeecCCEEecC------
Confidence 3567999999999986432122233332 35899999999999999877765 34578999999888888875
Q ss_pred CCCEEEEEEEeeEEeCCc------c--eEEEEeecCC--CeeEEeEEEEeEEEecCC
Q 041224 258 TSIVEDVHVRDCTFKGTK------N--GARIKTWQGG--SGHARRISFERIRLESSD 304 (400)
Q Consensus 258 ~~~i~ni~v~N~~~~~~~------~--gi~i~~~~~~--~g~i~nI~f~ni~~~~~~ 304 (400)
-...|+||.+.-.. . .-.|... ++ ...-..+.|.|+++....
T Consensus 399 ----a~avfq~c~i~~~~~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~C~it~~~ 450 (553)
T PLN02708 399 ----SAAVFQDCAILIAPRQLKPEKGENNAVTAH-GRTDPAQSTGFVFQNCLINGTE 450 (553)
T ss_pred ----ceEEEEccEEEEeccccCCCCCCceEEEeC-CCCCCCCCceEEEEccEEecCC
Confidence 35889999997321 1 1233332 21 133456889999998643
No 125
>COG5510 Predicted small secreted protein [Function unknown]
Probab=43.78 E-value=15 Score=24.20 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=6.6
Q ss_pred hhHHHHHHhhhhcc
Q 041224 5 LIIILILSMAIWGS 18 (400)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (400)
++++++++.+++++
T Consensus 8 ~i~~vll~s~llaa 21 (44)
T COG5510 8 LIALVLLASTLLAA 21 (44)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444455455543
No 126
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=42.91 E-value=1e+02 Score=29.91 Aligned_cols=37 Identities=14% Similarity=0.286 Sum_probs=18.7
Q ss_pred eeCcEEEEceEEeCCCCceE---------EEEeecceEEeceEEEC
Q 041224 157 SCNNLVFRGLTHVDSPGNHI---------SVYGCNDVSISNLKIIA 193 (400)
Q Consensus 157 ~~~nv~i~~v~i~ns~~~~i---------~~~~~~nv~i~~~~I~~ 193 (400)
.-+++..++++++|....+. .....+.+.+++|++..
T Consensus 187 ~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg 232 (405)
T COG4677 187 QNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLG 232 (405)
T ss_pred ecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEee
Confidence 34556666666666543221 11234555566666655
No 127
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=38.36 E-value=38 Score=23.52 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=12.8
Q ss_pred Cchhhh-HHHHHHhhhhccccC
Q 041224 1 MRELLI-IILILSMAIWGSSFQ 21 (400)
Q Consensus 1 m~~~~~-~~~~~~~~~~~~~~~ 21 (400)
||+.|. +++++.|+++++|++
T Consensus 1 mk~~~~s~~ala~l~sLA~CG~ 22 (58)
T COG5567 1 MKNVFKSLLALATLFSLAGCGL 22 (58)
T ss_pred ChhHHHHHHHHHHHHHHHhccc
Confidence 787664 444555556666664
No 128
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=38.29 E-value=33 Score=32.24 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=33.5
Q ss_pred CchhhhHHHHHHhhhhccccCcccccCCCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCC---CEE
Q 041224 1 MRELLIIILILSMAIWGSSFQPCEAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAG---KTF 77 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G---~~Y 77 (400)
|++...+++..+++.+.++ +.+.++++....|+-.| -|-+||.+-. |...|++|+| .+|
T Consensus 2 ~~~~~~~l~~A~~A~~~~~---~~a~A~~~Vv~SIKPl~-----------~iasaI~dGV----g~p~vlvp~gASpHdY 63 (318)
T COG4531 2 MLHKKTLLLSALFALLLGS---APAAAAAAVVTSIKPLG-----------FIASAIADGV----GEPEVLLPGGASPHDY 63 (318)
T ss_pred cchHHHHHHHHHHHHHhcc---chhcccccceeeeccHH-----------HHHHHHHccC----CCCceecCCCCCcccc
Confidence 3333444444444443322 22234555666776554 4566663211 4567999999 678
Q ss_pred Eeee
Q 041224 78 LLNP 81 (400)
Q Consensus 78 ~~~~ 81 (400)
.+.|
T Consensus 64 sLrP 67 (318)
T COG4531 64 SLRP 67 (318)
T ss_pred cCCh
Confidence 7653
No 129
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=37.53 E-value=70 Score=28.86 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=29.7
Q ss_pred CchhhhHHHHHHhhhhccccCcccccCCCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCC
Q 041224 1 MRELLIIILILSMAIWGSSFQPCEAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAG 74 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G 74 (400)
||+..++++.++|+.++ ...-+|.-||+-|.. |+-..-|. ....+ .|-.|.|-.|
T Consensus 1 Mk~~~~i~~~~~La~s~------------~~~adinlYGpGGPh----taL~~vA~-~~~ek--tg~kVnvt~G 55 (252)
T COG4588 1 MKKAVLILLIFLLAFSS------------AANADINLYGPGGPH----TALKDVAK-KYEEK--TGIKVNVTAG 55 (252)
T ss_pred CchhHHHHHHHHHHhhh------------hhcceEEEecCCCCc----HHHHHHHH-HHHHH--hCeEEEEecC
Confidence 78766665555544432 123356669986655 33333343 33333 3667777776
No 130
>PF15284 PAGK: Phage-encoded virulence factor
Probab=36.99 E-value=23 Score=25.11 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=13.3
Q ss_pred CchhhhHHHHHHhhhhc
Q 041224 1 MRELLIIILILSMAIWG 17 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (400)
||++..+|+.+++++++
T Consensus 1 Mkk~ksifL~l~~~LsA 17 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSA 17 (61)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 88888887777777765
No 131
>PRK09810 entericidin A; Provisional
Probab=35.15 E-value=28 Score=22.72 Aligned_cols=10 Identities=10% Similarity=0.135 Sum_probs=4.6
Q ss_pred chHHHHHHHH
Q 041224 47 DDSQAFLKAW 56 (400)
Q Consensus 47 ddt~aiq~Ai 56 (400)
.|-++-=+||
T Consensus 27 kDv~~~G~aI 36 (41)
T PRK09810 27 EDIKHLGNSI 36 (41)
T ss_pred HhHHHHHHHH
Confidence 4444444444
No 132
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=33.84 E-value=39 Score=30.24 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=18.7
Q ss_pred CchhhhHHHHHHhhhhccccCcccccCCCCeeEEeeecC
Q 041224 1 MRELLIIILILSMAIWGSSFQPCEAFPSYASSVSVIQFG 39 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~d~G 39 (400)
||.++.|+++++++.... .....+++..|.
T Consensus 1 MKll~~lilli~~~~~~~---------~~~~yvn~~py~ 30 (212)
T PF11912_consen 1 MKLLISLILLILLIINFS---------SSSQYVNFQPYQ 30 (212)
T ss_pred CcHHHHHHHHHHHHHhhh---------cCCcEEEEEEec
Confidence 888665555544443321 345789999996
No 133
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=33.26 E-value=35 Score=28.83 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=17.2
Q ss_pred CchhhhHHHHHHhhhhccccCcc
Q 041224 1 MRELLIIILILSMAIWGSSFQPC 23 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (400)
+++++.+++.+++..+.||+.+.
T Consensus 1 ~r~~~s~~Lv~~~~~Lvsc~~p~ 23 (142)
T TIGR03042 1 LRSLASLLLVLLLTFLVSCSGPA 23 (142)
T ss_pred ChhHHHHHHHHHHHHHHHcCCCc
Confidence 56777777777777788888865
No 134
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=32.28 E-value=26 Score=23.53 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=9.4
Q ss_pred CchhhhHHHHHHhhhh
Q 041224 1 MRELLIIILILSMAIW 16 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (400)
||+.+.++++|-++.+
T Consensus 3 lKKsllLlfflG~ISl 18 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISL 18 (46)
T ss_pred chHHHHHHHHHHHccc
Confidence 6776666665554443
No 135
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=31.82 E-value=77 Score=26.36 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=9.1
Q ss_pred CchhhhHHHHHHhh
Q 041224 1 MRELLIIILILSMA 14 (400)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (400)
||++++++++++.+
T Consensus 1 m~~~~~~~~~~~~~ 14 (131)
T PF11948_consen 1 MKRFLALFLSVLSA 14 (131)
T ss_pred CcchHHHHHHHHHH
Confidence 89988776544433
No 136
>PLN02497 probable pectinesterase
Probab=31.12 E-value=5.1e+02 Score=25.28 Aligned_cols=112 Identities=10% Similarity=0.068 Sum_probs=73.5
Q ss_pred EeecceEEeceEEECCCCCC-------C--CCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEE
Q 041224 179 YGCNDVSISNLKIIAPESSP-------N--TDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISI 249 (400)
Q Consensus 179 ~~~~nv~i~~~~I~~~~~~~-------n--~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~i 249 (400)
...+++..+|++|.|....+ . .-.+.+. .++..+.||.+....|-+-... ..-+++||++.+.-.+-+
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~-gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIF 188 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIG-GDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIF 188 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEec-CCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEc
Confidence 45679999999999853211 1 1123333 5889999999999888775544 457899999988777777
Q ss_pred eccCCCCCCCCEEEEEEEeeEEeCCcc------eEEEEeecC-CCeeEEeEEEEeEEEecC
Q 041224 250 GSLGANGGTSIVEDVHVRDCTFKGTKN------GARIKTWQG-GSGHARRISFERIRLESS 303 (400)
Q Consensus 250 gs~g~~~~~~~i~ni~v~N~~~~~~~~------gi~i~~~~~-~~g~i~nI~f~ni~~~~~ 303 (400)
|. -...|+||++..... .-.|..... ....-....|.|+++...
T Consensus 189 G~----------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 189 GS----------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred cC----------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 64 247888888874211 123433211 112334678999999863
No 137
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=30.02 E-value=1.9e+02 Score=23.23 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=39.2
Q ss_pred eeeCcEEEEceEEeCC---CCceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEe-eEEecCCceE
Q 041224 156 GSCNNLVFRGLTHVDS---PGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRD-CTIATGDDCV 225 (400)
Q Consensus 156 ~~~~nv~i~~v~i~ns---~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n-~~i~~~dD~i 225 (400)
..+.+..+++-.+.+. ..+++.+..+.+..+.+-.+. .. .. .+|+.++.+.+..+.+ ..+....|++
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi 143 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGI 143 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcE
Confidence 4555666666666554 267777776666555555554 11 11 6777777777776666 4444444444
No 138
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=29.98 E-value=4.5e+02 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=16.7
Q ss_pred cchHHHHHHHHHHHhcCCCCCceEEecCC-CEEEe-eeeee
Q 041224 46 TDDSQAFLKAWKSICGSKSNAAPLLVPAG-KTFLL-NPVSF 84 (400)
Q Consensus 46 tddt~aiq~Ai~~a~~~~~gg~~v~iP~G-~~Y~~-~~l~l 84 (400)
-.|-+..|+|| ++|..| +.|.+ ....+
T Consensus 140 FlDPdRm~a~l------------LWftrGyvEYkfPNna~~ 168 (308)
T COG4189 140 FLDPDRMNAAL------------LWFTRGYVEYKFPNNAKH 168 (308)
T ss_pred cCCHHHhhhhe------------eeeecccEEEECCCchhh
Confidence 35666777666 777777 56666 33444
No 139
>PF14262 DUF4353: Domain of unknown function (DUF4353)
Probab=27.86 E-value=5.2e+02 Score=24.33 Aligned_cols=33 Identities=15% Similarity=0.442 Sum_probs=19.8
Q ss_pred CceEEe-cCCCEEEe-e-----eeeecCCCCCCCeEEEEeEE
Q 041224 66 AAPLLV-PAGKTFLL-N-----PVSFQGPCKSSSINVQIQGN 100 (400)
Q Consensus 66 g~~v~i-P~G~~Y~~-~-----~l~l~~~~ks~~v~l~~~g~ 100 (400)
+.+|.| .+| +|.+ | +|.+... +...|+|.|+|.
T Consensus 6 ~~~vtIt~~G-tY~lsGs~~~g~i~V~a~-~~~~v~lvL~gv 45 (264)
T PF14262_consen 6 GSTVTITKAG-TYVLSGSLSDGQIVVDAG-DTDKVRLVLDGV 45 (264)
T ss_pred CCEEEEcCCE-EEEEEEEccCcEEEEEcC-CCceEEEEECCe
Confidence 567888 567 9988 3 3444321 112678888764
No 140
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=25.81 E-value=99 Score=31.99 Aligned_cols=9 Identities=11% Similarity=0.516 Sum_probs=5.2
Q ss_pred CceEEecCC
Q 041224 66 AAPLLVPAG 74 (400)
Q Consensus 66 g~~v~iP~G 74 (400)
|-.+.+.+.
T Consensus 52 g~nivv~~~ 60 (499)
T PRK15346 52 GIPVVISPE 60 (499)
T ss_pred CCCEEECcc
Confidence 445666664
No 141
>PRK09929 hypothetical protein; Provisional
Probab=25.60 E-value=1.7e+02 Score=22.76 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=6.7
Q ss_pred CchhhhHHHHHH
Q 041224 1 MRELLIIILILS 12 (400)
Q Consensus 1 m~~~~~~~~~~~ 12 (400)
||++..+++..+
T Consensus 1 ~~~~~~~~~~al 12 (91)
T PRK09929 1 MKIISKMLLGAL 12 (91)
T ss_pred ChhHHHHHHHHH
Confidence 777666544333
No 142
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=25.42 E-value=49 Score=25.75 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=21.3
Q ss_pred eeecCccC-CCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEe
Q 041224 35 VIQFGAVG-DGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLL 79 (400)
Q Consensus 35 v~d~Ga~g-dg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~ 79 (400)
..|||-.+ +.....-..+++||.+-... ..+ +..| +|+-
T Consensus 9 a~DFGi~~~~~N~~t~~~F~~aI~~hi~~---~~t--v~~G-tYr~ 48 (92)
T PF11429_consen 9 AGDFGITGTNWNKETLEEFEDAIKEHIKN---PDT--VEKG-TYRR 48 (92)
T ss_dssp GGGGT------SHHHHHHHHHHHHHHHH----TT---EE---BETT
T ss_pred ccccCcccCCCChhhHHHHHHHHHHHhCC---CCe--Eecc-ceec
Confidence 46899888 55555667899999765553 345 4599 9985
No 143
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=25.02 E-value=66 Score=28.59 Aligned_cols=17 Identities=24% Similarity=0.334 Sum_probs=12.2
Q ss_pred CchhhhHHHHHHhhhhc
Q 041224 1 MRELLIIILILSMAIWG 17 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (400)
||+.+.+++++++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (189)
T PF12099_consen 1 MKKIRILFLLLLLFCSL 17 (189)
T ss_pred CceehHHHHHHHHHHHh
Confidence 89888777766666654
No 144
>TIGR02001 gcw_chp conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.
Probab=24.67 E-value=43 Score=31.06 Aligned_cols=21 Identities=14% Similarity=0.136 Sum_probs=17.4
Q ss_pred eecCccCCCCcchHHHHHHHH
Q 041224 36 IQFGAVGDGETDDSQAFLKAW 56 (400)
Q Consensus 36 ~d~Ga~gdg~tddt~aiq~Ai 56 (400)
.||=-+|=.++++-+|||-.+
T Consensus 42 SdY~~RGisqt~~~pavQg~~ 62 (243)
T TIGR02001 42 SDYVFRGVSQTNSDPAIQGGL 62 (243)
T ss_pred EeeEEeCcccCCCCcEEEeEE
Confidence 478888878888889988887
No 145
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=24.66 E-value=31 Score=22.73 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=5.7
Q ss_pred CchhhhHHHHH
Q 041224 1 MRELLIIILIL 11 (400)
Q Consensus 1 m~~~~~~~~~~ 11 (400)
||+.+.+++++
T Consensus 1 MkKi~~~~i~~ 11 (46)
T PF02402_consen 1 MKKIIFIGIFL 11 (46)
T ss_pred CcEEEEeHHHH
Confidence 78655443333
No 146
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=24.46 E-value=84 Score=29.64 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=17.8
Q ss_pred CchhhhHHHHHHhhhhccccCcc
Q 041224 1 MRELLIIILILSMAIWGSSFQPC 23 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (400)
||++|+.++++..+.+++|+..+
T Consensus 1 Mkk~~l~~~l~sal~L~GCg~~s 23 (268)
T PF12262_consen 1 MKKLLLSSALASALGLAGCGGDS 23 (268)
T ss_pred CchHHHHHHHHHHHHeeecCCCc
Confidence 99998887777777788888643
No 147
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=23.12 E-value=8.1e+02 Score=24.96 Aligned_cols=206 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEe--EEEEccCCCCccCCCccccEEEeeeeceE
Q 041224 50 QAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQ--GNIVAPHSSAWDGHDKKKWLLFSNVNGLT 127 (400)
Q Consensus 50 ~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~--g~i~~~~~~~~~~~~~~~~i~~~~~~nv~ 127 (400)
+-|.+|+ .......-...+++-+| +|..-.|.+ .| +|.+..+ +.+. +-|.
T Consensus 33 D~iEea~-~~l~e~~~e~LIFlH~G-~~e~~~i~I----~s-dvqiiGAs~~dia---------------------~sVv 84 (625)
T KOG1777|consen 33 DHIEEAL-RFLDENDEEKLIFLHEG-THETETIRI----TS-DVQIIGASPSDIA---------------------TSVV 84 (625)
T ss_pred hhHHHHh-hhcccccccceEEEEec-cccceEEEE----cC-CeeEeccCCccce---------------------eeEE
Q ss_pred EecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecce------EEeceEEECCCCCCCCC
Q 041224 128 VNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDV------SISNLKIIAPESSPNTD 201 (400)
Q Consensus 128 I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv------~i~~~~I~~~~~~~n~D 201 (400)
++| .+...+.|.. +--+--+|++-.|.-.-+...|.++ .+++|.|.++. ...-
T Consensus 85 le~-----------------~~~t~l~F~~--~AY~Gy~Tvkf~~d~~h~~h~~ld~~~d~~p~ie~c~i~s~~--~~g~ 143 (625)
T KOG1777|consen 85 LEG-----------------RHATTLEFQE--SAYVGYVTVKFEPDQEHHAHVCLDIEVDASPAIEECIIRSTG--GVGA 143 (625)
T ss_pred Eec-----------------ccccEEEEee--cceEEEEEEEeccccccceeEEEeeccCCCcccccccccCCC--ccCc
Q ss_pred eeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCc--eEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEE
Q 041224 202 GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGH--GISIGSLGANGGTSIVEDVHVRDCTFKGTKNGAR 279 (400)
Q Consensus 202 Gi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~--gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~ 279 (400)
...+.+.-.=++..|.+.....+=-+-..-..=.+++|.+.... ++-++.. -+=++++|++.+...+--
T Consensus 144 Avcv~g~a~P~~~~c~isDceNvglyvTd~a~g~yEh~ei~~NalA~vwvknh---------a~p~~R~~~ih~G~dvGi 214 (625)
T KOG1777|consen 144 AVCVPGEAEPEIKLCAISDCENVGLYVTDHAQGIYEHCEISRNALAGVWVKNH---------AFPTMRNCTIHHGRDVGI 214 (625)
T ss_pred ccccCCccCcceeecccccCcceeEEEEeccccceecchhccccccceeeccc---------cChhhhhceeecCCccce
Q ss_pred EEeecCCC----eeEEeEEEEeEEEecCCccEEEEeee
Q 041224 280 IKTWQGGS----GHARRISFERIRLESSDNPIIIDQYY 313 (400)
Q Consensus 280 i~~~~~~~----g~i~nI~f~ni~~~~~~~~i~i~~~~ 313 (400)
+....+.+ -.+..-+++.+.+..-.+|+.+...+
T Consensus 215 ftf~hg~Gy~e~cd~~qnlisg~eVkf~anp~~~rcev 252 (625)
T KOG1777|consen 215 FTFEHGQGYFESCDIHQNLISGIEVKFRANPIVLRCEV 252 (625)
T ss_pred EEeccCcCCCccchHHHhhhcceEEEeeccceEEEEEE
No 148
>TIGR03524 GldJ gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. There is a GldJ homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=23.09 E-value=65 Score=33.46 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.7
Q ss_pred CCceEEecCCCEEEeee
Q 041224 65 NAAPLLVPAGKTFLLNP 81 (400)
Q Consensus 65 gg~~v~iP~G~~Y~~~~ 81 (400)
+.+.|.||+| +|.+|.
T Consensus 58 ~p~MV~IPGG-~F~MGs 73 (559)
T TIGR03524 58 PPGLVFVEGG-TFTMGQ 73 (559)
T ss_pred CCceEEECCc-EEEeCC
Confidence 4678999999 999973
No 149
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=23.00 E-value=1.1e+02 Score=19.32 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=7.1
Q ss_pred CchhhhHHHHHHhh
Q 041224 1 MRELLIIILILSMA 14 (400)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (400)
||-+-+.|++++|+
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 66544434444445
No 150
>PRK14762 membrane protein; Provisional
Probab=21.98 E-value=74 Score=18.25 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=7.5
Q ss_pred CchhhhHHHHHHh
Q 041224 1 MRELLIIILILSM 13 (400)
Q Consensus 1 m~~~~~~~~~~~~ 13 (400)
||.+++.+++.++
T Consensus 1 mki~lw~i~iifl 13 (27)
T PRK14762 1 MKIILWAVLIIFL 13 (27)
T ss_pred CeeHHHHHHHHHH
Confidence 7877765444443
No 151
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=21.92 E-value=62 Score=28.18 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=15.0
Q ss_pred CchhhhHHHHHHhhhhccccC
Q 041224 1 MRELLIIILILSMAIWGSSFQ 21 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (400)
||+.+++++++.++++..|+.
T Consensus 1 MK~~~~li~l~~~LlL~GCAg 21 (171)
T PRK13733 1 MKQISLLIPLLGTLLLSGCAG 21 (171)
T ss_pred CchhhHHHHHHHHHHhccccC
Confidence 898777777777666666665
No 152
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=21.61 E-value=47 Score=28.07 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=12.1
Q ss_pred CchhhhHHHHHHhhhh
Q 041224 1 MRELLIIILILSMAIW 16 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (400)
|+++.+++++|||++-
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (141)
T PRK12618 1 MMRLVLLLLLLLLAQP 16 (141)
T ss_pred ChhHHHHHHHHhCCcc
Confidence 7888888787887664
No 153
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.58 E-value=80 Score=26.87 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=9.2
Q ss_pred CchhhhHHHHHHhhh
Q 041224 1 MRELLIIILILSMAI 15 (400)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (400)
||+++++++++++++
T Consensus 1 M~~~~~~~~~~~~~~ 15 (162)
T PF12276_consen 1 MKRRLLLALALALLA 15 (162)
T ss_pred CchHHHHHHHHHHHH
Confidence 888776655555443
No 154
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=21.23 E-value=99 Score=28.17 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=30.9
Q ss_pred eeEEeeecCccCCCCcchHH------------HHHHHHHHHhcCCCCCceEEe-cCCCEEEe
Q 041224 31 SSVSVIQFGAVGDGETDDSQ------------AFLKAWKSICGSKSNAAPLLV-PAGKTFLL 79 (400)
Q Consensus 31 ~~~nv~d~Ga~gdg~tddt~------------aiq~Ai~~a~~~~~gg~~v~i-P~G~~Y~~ 79 (400)
..+|++||.-..-.+.||++ -|.+||+++.+.. ..+||+ |.|+.|.-
T Consensus 34 ~~~n~Rdfs~dkh~~VDD~PyGGG~GMvm~~epl~~al~~~~~~~--~~vi~lsP~G~~f~Q 93 (222)
T PRK14599 34 NPIQLRDFSGNKHNRVDDTIYGGGPGMLLRVEPIHKALLSLGEKK--GIVILTSPSGIPFNQ 93 (222)
T ss_pred EEEcchhhcCCCCCccCCCCCCCCCCcEecchHHHHHHHHHhhcC--CcEEEECCCCCccCH
Confidence 46788888866555566654 5999996554322 345665 88977755
No 155
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=21.07 E-value=57 Score=23.81 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=10.1
Q ss_pred CchhhhHHHHHHhhh
Q 041224 1 MRELLIIILILSMAI 15 (400)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (400)
||++..+|++|+++.
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (92)
T TIGR02052 1 MKKLATLLALFVLTS 15 (92)
T ss_pred ChhHHHHHHHHHHhc
Confidence 888777766666444
No 156
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=20.84 E-value=1.3e+02 Score=27.95 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=18.1
Q ss_pred CcchHHHHHHHHHHHh-c--C--CCCCceEEecCC
Q 041224 45 ETDDSQAFLKAWKSIC-G--S--KSNAAPLLVPAG 74 (400)
Q Consensus 45 ~tddt~aiq~Ai~~a~-~--~--~~gg~~v~iP~G 74 (400)
...|+.+|.++|++.- + . ..+|.+|++|+.
T Consensus 28 ~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~ 62 (249)
T PRK15348 28 PEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQS 62 (249)
T ss_pred CHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHH
Confidence 3568889999985421 0 0 113556777776
No 157
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=20.25 E-value=1e+02 Score=28.31 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=31.0
Q ss_pred eeEEeeecCccCCCCcchH------------HHHHHHHHHHhcCCCCCceEEe-cCCCEEEee
Q 041224 31 SSVSVIQFGAVGDGETDDS------------QAFLKAWKSICGSKSNAAPLLV-PAGKTFLLN 80 (400)
Q Consensus 31 ~~~nv~d~Ga~gdg~tddt------------~aiq~Ai~~a~~~~~gg~~v~i-P~G~~Y~~~ 80 (400)
..+|++||....-.+.||+ +-|.+||+++.+.. ..+||+ |.|++|.-.
T Consensus 34 ~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~epl~~al~~~~~~~--~~vi~lsP~G~~f~Q~ 94 (233)
T TIGR00088 34 EVVNPRDFSKDKHKTVDDRPYGGGAGMVLKPEPIRDALHSVKAPA--GTVILLSPQGRKFDQA 94 (233)
T ss_pred EEEcchhccCCCCCcCCCCCCCCCCCcEechHHHHHHHHHHhhcC--CcEEEECCCCCcCCHH
Confidence 4578888886654555555 56999996554322 336665 889777553
Done!