BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041225
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 136/344 (39%), Gaps = 64/344 (18%)
Query: 30 RTLSINEDLGQIRYIFSDKTGTLTENKMEFQRASVCGKNYGNXXXXXXXXXXXXXXXWKL 89
R+L E LG I SDKTGTLT N+M + + K G+
Sbjct: 335 RSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSL-------------- 380
Query: 90 KSEISVDSKLMELLSKDLVGDERIAAHEF-----FLTLAA-CNTVIPIPTPSRSSGCTNG 143
+E S+ + L D+ I + +F T+ A CN S T G
Sbjct: 381 -NEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCND------SSLDFNETKG 433
Query: 144 LLENV-EAIDYQGESPDEQALVSAASAYGYTLFERTSG--HIVIDINGEGLRLDVLGLHE 200
+ E V EA + + E+ V + ER + ++ + + L E
Sbjct: 434 VYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTL------E 487
Query: 201 FDSVRKRMSVVIRFPDNSV-----KVLVKGADSSMF---NILAKDSKRNDLIRHITQSHL 252
F RK MSV +S K+ VKGA + N + + R + + + L
Sbjct: 488 FSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKIL 547
Query: 253 SEYSSQG-----LRTLVVASRDLADEELKQWQHRYEDASTSLVDRASKLRQTAALIECDL 307
S G LR L +A+RD + + ++D +S+ + E DL
Sbjct: 548 SVIKEWGTGRDTLRCLALATRDTPPKREEM-----------VLDDSSRFME----YETDL 592
Query: 308 TLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGDKQDTAISI 351
T +G G+ D + V +I+ R AGI+V ++TGD + TAI+I
Sbjct: 593 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 636
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 462 SCRVVLC-CRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQ 520
+CR C RV P K+ IV+ ++S D++T GDG ND ++ A++G+ + G
Sbjct: 670 ACRRACCFARVEPSHKSKIVEYLQSY-DEITAMTGDGVNDAPALKKAEIGIAM-GSGTAV 727
Query: 521 AVMASDFAMGQFRFLKRLLLV-HGHWNYQRIGYLVLYNFYRNAVFVLMLFWYILFTGFST 579
A AS+ + F + V G Y + + Y N V+ +F L
Sbjct: 728 AKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIF---LTAALGL 784
Query: 580 TSALTDWSSVFYSLLYTSVPTIVVGIVDKDL 610
AL ++ +L+ +P +G DL
Sbjct: 785 PEALIPVQLLWVNLVTDGLPATALGFNPPDL 815
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 136/344 (39%), Gaps = 64/344 (18%)
Query: 30 RTLSINEDLGQIRYIFSDKTGTLTENKMEFQRASVCGKNYGNXXXXXXXXXXXXXXXWKL 89
R+L E LG I SDKTGTLT N+M + + K G+
Sbjct: 334 RSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSL-------------- 379
Query: 90 KSEISVDSKLMELLSKDLVGDERIAAHEF-----FLTLAA-CNTVIPIPTPSRSSGCTNG 143
+E S+ + L D+ I + +F T+ A CN S T G
Sbjct: 380 -NEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCND------SSLDFNETKG 432
Query: 144 LLENV-EAIDYQGESPDEQALVSAASAYGYTLFERTSG--HIVIDINGEGLRLDVLGLHE 200
+ E V EA + + E+ V + ER + ++ + + L E
Sbjct: 433 VYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTL------E 486
Query: 201 FDSVRKRMSVVIRFPDNSV-----KVLVKGADSSMF---NILAKDSKRNDLIRHITQSHL 252
F RK MSV +S K+ VKGA + N + + R + + + L
Sbjct: 487 FSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKIL 546
Query: 253 SEYSSQG-----LRTLVVASRDLADEELKQWQHRYEDASTSLVDRASKLRQTAALIECDL 307
S G LR L +A+RD + + ++D +S+ + E DL
Sbjct: 547 SVIKEWGTGRDTLRCLALATRDTPPKREEM-----------VLDDSSRFME----YETDL 591
Query: 308 TLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGDKQDTAISI 351
T +G G+ D + V +I+ R AGI+V ++TGD + TAI+I
Sbjct: 592 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 462 SCRVVLC-CRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQ 520
+CR C RV P K+ IV+ ++S D++T GDG ND ++ A++G+ + G
Sbjct: 669 ACRRACCFARVEPSHKSKIVEYLQSY-DEITAMTGDGVNDAPALKKAEIGIAM-GSGTAV 726
Query: 521 AVMASDFAMGQFRFLKRLLLV-HGHWNYQRIGYLVLYNFYRNAVFVLMLFWYILFTGFST 579
A AS+ + F + V G Y + + Y N V+ +F L
Sbjct: 727 AKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIF---LTAALGL 783
Query: 580 TSALTDWSSVFYSLLYTSVPTIVVGIVDKDL 610
AL ++ +L+ +P +G DL
Sbjct: 784 PEALIPVQLLWVNLVTDGLPATALGFNPPDL 814
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 135/344 (39%), Gaps = 65/344 (18%)
Query: 30 RTLSINEDLGQIRYIFSDKTGTLTENKMEFQRASVCGKNYGNXXXXXXXXXXXXXXXWKL 89
R+L E LG I SDKTGTLT N+M + + + G+ L
Sbjct: 334 RSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDRIDGDLC---------------L 378
Query: 90 KSEISVDSKLMELLSKDLVGDERIAAHEF-----FLTLAA-CNTVIPIPTPSRSSGCTNG 143
+E SV + L D+ + + ++ T+ A CN S T G
Sbjct: 379 LNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELATICALCND------SSLDFNETKG 432
Query: 144 LLENV-EAIDYQGESPDEQALVSAASAYGYTLFERTSG--HIVIDINGEGLRLDVLGLHE 200
+ E V EA + + E+ V + ER + ++ + + L E
Sbjct: 433 IYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTL------E 486
Query: 201 FDSVRKRMSVVIRFPDNSV-----KVLVKGADSSMF---NILAKDSKRNDLIRHITQSHL 252
F RK MSV P S K+ VKGA + N + + R + + + L
Sbjct: 487 FSRDRKSMSVYCS-PAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKIL 545
Query: 253 SEYSSQG-----LRTLVVASRDLADEELKQWQHRYEDASTSLVDRASKLRQTAALIECDL 307
S G LR L +A+RD + + D ST ++ E DL
Sbjct: 546 SVIKEWGTGRDTLRCLALATRDTPPKR----EEMVLDDSTKFME-----------YETDL 590
Query: 308 TLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGDKQDTAISI 351
T +G G+ D + V +I+ R AGI+V ++TGD + TAI+I
Sbjct: 591 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 634
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 462 SCRVVLC-CRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQ 520
+CR C RV P K+ IV+ ++S D++T GDG ND ++ A++G+ + G
Sbjct: 668 ACRRACCFARVEPTHKSKIVEYLQS-FDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAV 725
Query: 521 AVMASDFAMGQFRFLKRLLLV-HGHWNYQRIGYLVLYNFYRNAVFVLMLFWYILFTGFST 579
A AS+ + F + V G Y + + Y N V+ +F L
Sbjct: 726 AKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIF---LTAALGL 782
Query: 580 TSALTDWSSVFYSLLYTSVPTIVVGIVDKDL 610
AL ++ +L+ +P +G DL
Sbjct: 783 PEALIPVQLLWVNLVTDGLPATALGFNPPDL 813
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 200 EFDSVRKRMSVVIRFPDNSV-----KVLVKGADSSMF---NILAKDSKRNDLIRHITQSH 251
EF RK MSV +S K+ VKGA + N + + R + + +
Sbjct: 486 EFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKI 545
Query: 252 LSEYSSQG-----LRTLVVASRDLADEELKQWQHRYEDASTSLVDRASKLRQTAALIECD 306
LS G LR L +A+RD + + ++D +S+ + E D
Sbjct: 546 LSVIKEWGTGRDTLRCLALATRDTPPKREEM-----------VLDDSSRFME----YETD 590
Query: 307 LTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGDKQDTAISI 351
LT +G G+ D + V +I+ R AGI+V ++TGD + TAI+I
Sbjct: 591 LTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 462 SCRVVLC-CRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQ 520
+CR C RV P K+ IV+ ++S D++T GDG ND ++ A++G+ + G
Sbjct: 669 ACRRACCFARVEPSHKSKIVEYLQSY-DEITAMTGDGVNDAPALKKAEIGIAM-GSGTAV 726
Query: 521 AVMASDFAMGQFRFLKRLLLV-HGHWNYQRIGYLVLYNFYRNAVFVLMLFWYILFTGFST 579
A AS+ + F + V G Y + + Y N V+ +F L
Sbjct: 727 AKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIF---LTAALGL 783
Query: 580 TSALTDWSSVFYSLLYTSVPTIVVGIVDKDL 610
AL ++ +L+ +P +G DL
Sbjct: 784 PEALIPVQLLWVNLVTDGLPATALGFNPPDL 814
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 61/216 (28%)
Query: 306 DLTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGDKQDTAISIALSCKLLTPDMQQI 365
DL +G + D + VP+A+ R AGIKV ++TGD TA +IA +++
Sbjct: 587 DLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS------ 640
Query: 366 IINGNSEEECKDLLADAKARYGVKSSNRTKCNSKLKRSAEIEYLAISNDAKFSDVPQGHD 425
E + + D AR ++P G
Sbjct: 641 --------EGNETIEDIAARL--------------------------------NIPIG-- 658
Query: 426 VKEVAAIASLALIIDGNSLVYILEKDLESDLFD--LATSCRVVLCCRVAPLQKAGIVDLI 483
+V + A ++ G+ L KDL +++ D L +V R +P QK IV+
Sbjct: 659 --QVNPRDAKACVVHGSDL-----KDLSTEVLDDILHYHTEIVF-ARTSPQQKLIIVEGC 710
Query: 484 KSRTDDMTLAIGDGANDVSMIQMADVGV--GICGQE 517
+ R + GDG ND ++ AD+GV GI G +
Sbjct: 711 Q-RQGAIVAVTGDGVNDSPALKKADIGVAMGISGSD 745
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 25 SRFQC--RTLSINEDLGQIRYIFSDKTGTLTENKM 57
+R C + L E LG I SDKTGTLT+N+M
Sbjct: 357 ARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRM 391
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 127/343 (37%), Gaps = 101/343 (29%)
Query: 204 VRKRMSVVIRFPDNSVK------------------VLVKGADSSMFN------ILAKDSK 239
+R+R + ++ P NS +++KGA + + I K+
Sbjct: 439 MRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQP 498
Query: 240 RNDLIRHITQSHLSEYSSQGLRTLVVASRDLADEELKQ-WQHRYEDASTSLVDRASKLRQ 298
++ ++ Q+ E G R L L DE+ + +Q +D + L +
Sbjct: 499 LDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDN------- 551
Query: 299 TAALIECDLTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGDKQDTAISIALSCKLL 358
L +G + D + VP+A+ R AGIKV ++TGD TA +IA
Sbjct: 552 --------LCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG-- 601
Query: 359 TPDMQQIIINGNSEEECKDLLADAKARYGVKSSNRTKCNSKLKRSAEIEYLAISNDAKFS 418
II GN E D AR + S + N + DAK
Sbjct: 602 ------IISEGNETVE------DIAARLNIPVS---QVNPR--------------DAK-- 630
Query: 419 DVPQGHDVKEVAAIASLALIIDGNSLVYILEKDLESDLFD--LATSCRVVLCCRVAPLQK 476
A ++ G+ L KD+ S+ D L +V R +P QK
Sbjct: 631 -----------------ACVVHGSDL-----KDMTSEQLDDILKYHTEIVF-ARTSPQQK 667
Query: 477 AGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGV--GICGQE 517
IV+ + R + GDG ND + AD+GV GI G +
Sbjct: 668 LIIVEGCQ-RQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSD 709
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 127/343 (37%), Gaps = 101/343 (29%)
Query: 204 VRKRMSVVIRFPDNSVK------------------VLVKGADSSMFN------ILAKDSK 239
+R+R + ++ P NS +++KGA + + I K+
Sbjct: 445 MRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQP 504
Query: 240 RNDLIRHITQSHLSEYSSQGLRTLVVASRDLADEELKQ-WQHRYEDASTSLVDRASKLRQ 298
++ ++ Q+ E G R L L DE+ + +Q +D + L +
Sbjct: 505 LDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDN------- 557
Query: 299 TAALIECDLTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGDKQDTAISIALSCKLL 358
L +G + D + VP+A+ R AGIKV ++TGD TA +IA
Sbjct: 558 --------LCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG-- 607
Query: 359 TPDMQQIIINGNSEEECKDLLADAKARYGVKSSNRTKCNSKLKRSAEIEYLAISNDAKFS 418
II GN E D AR + S + N + DAK
Sbjct: 608 ------IISEGNETVE------DIAARLNIPVS---QVNPR--------------DAK-- 636
Query: 419 DVPQGHDVKEVAAIASLALIIDGNSLVYILEKDLESDLFD--LATSCRVVLCCRVAPLQK 476
A ++ G+ L KD+ S+ D L +V R +P QK
Sbjct: 637 -----------------ACVVHGSDL-----KDMTSEQLDDILKYHTEIVF-ARTSPQQK 673
Query: 477 AGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGV--GICGQE 517
IV+ + R + GDG ND + AD+GV GI G +
Sbjct: 674 LIIVEGCQ-RQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSD 715
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 25 SRFQC--RTLSINEDLGQIRYIFSDKTGTLTENKM 57
+R C + L E LG I SDKTGTLT+N+M
Sbjct: 327 ARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRM 361
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 59/215 (27%)
Query: 307 LTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGDKQDTAISIALSCKLLTPDMQQII 366
L+ G + D + VP+A+ R AGI+V ++TGD TA +IA S +++
Sbjct: 593 LSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIIS------- 645
Query: 367 INGNSEEECKDLLADAKARYGVKSSNRTKCNSKLKRSAEIEYLAISNDAKFSDVPQGHDV 426
E +D+ A+ R V NR DA+
Sbjct: 646 ---EGSETVEDI--AARLRVPVDQVNR-------------------KDAR---------- 671
Query: 427 KEVAAIASLALIIDGNSLVYILEKDLE-SDLFDLATSCRVVLCCRVAPLQKAGIVDLIKS 485
A +I+G L KD++ S+L + + ++ R +P QK IV+ +
Sbjct: 672 ---------ACVINGMQL-----KDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQ- 716
Query: 486 RTDDMTLAIGDGANDVSMIQMADVGV--GICGQEG 518
R + GDG ND ++ AD+GV GI G +
Sbjct: 717 RLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDA 751
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 30 RTLSINEDLGQIRYIFSDKTGTLTENKM 57
+ L E LG I SDKTGTLT+N+M
Sbjct: 369 KNLEAVETLGSTSVICSDKTGTLTQNRM 396
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 192 RLDVLGLHEFDSVRKRMSVVIRFPDNSVKVLVKGADSSMFNILAKDSKRNDLIRHITQSH 251
+ VL H FD V K++ V+ P VKGA + + +D + + ++
Sbjct: 442 KYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEVDQAYKNK 501
Query: 252 LSEYSSQGLRTLVVASR 268
++E++++G R+L VA +
Sbjct: 502 VAEFATRGFRSLGVARK 518
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 29 CRTLSINEDLGQIRYIFSDKTGTLTENKMEFQ 60
+ LS E L + + SDKTGTLT+NK+
Sbjct: 360 VQKLSAIESLAGVEILCSDKTGTLTKNKLSLH 391
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 469 CRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICG 515
V P K +V++++ R + + GDG ND ++ AD G+ + G
Sbjct: 608 AEVFPQHKYNVVEILQQRGYLVAMT-GDGVNDAPSLKKADTGIAVEG 653
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 286 STSLVDRASKLRQTAA---LIECDLTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTG 342
+ L ++A +LR A + D + +ED ++ PE I L+Q+GI++ +LTG
Sbjct: 519 NAPLFEKADELRGKGASVMFMAVDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTG 578
Query: 343 DKQDTAISIA 352
D + TA ++A
Sbjct: 579 DSKRTAEAVA 588
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 491 TLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDF 527
T++ GDG ND+SM++ A +GV + GQ A+D+
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM-GQAKEDVKAAADY 241
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 491 TLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDF 527
T++ GDG ND+SM++ A +GV + GQ A+D+
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM-GQAKEDVKAAADY 241
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 491 TLAIGDGANDVSMIQMADVGVGICGQ 516
T+A+GDGAND+SM + A + + C +
Sbjct: 162 TVAVGDGANDISMFKKAGLKIAFCAK 187
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 298 QTAALIECDLTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGD--KQDTAISIALSC 355
+TA ++ + + G + D L++ A++ L++ GIKV ++TGD + AIS L+
Sbjct: 437 KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 496
Query: 356 KLLTPDMQQIIINGNSEEECKDLLA 380
L+ + ++ EE K L A
Sbjct: 497 DLVIAE----VLPHQKSEEVKKLQA 517
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 298 QTAALIECDLTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGD--KQDTAISIALSC 355
+TA ++ + + G + D L++ A++ L++ GIKV ++TGD + AIS L+
Sbjct: 515 KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 574
Query: 356 KLLTPDMQQIIINGNSEEECKDLLA 380
L+ + ++ EE K L A
Sbjct: 575 DLVIAE----VLPHQKSEEVKKLQA 595
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 491 TLAIGDGANDVSMIQMADVGVGICGQ 516
T+A+GDGAND+SM + A + + C +
Sbjct: 162 TVAVGDGANDISMFKKAGLKIAFCAK 187
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 487 TDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDF 527
T + +AIGDG ND+SMI+ A +GV + G A+D+
Sbjct: 212 TREEVIAIGDGYNDLSMIKFAGMGVAM-GNAQEPVKKAADY 251
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 298 QTAALIECDLTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGD--KQDTAISIALSC 355
+TA ++ + + G + D L++ A++ L++ GIKV ++TGD + AIS L+
Sbjct: 143 KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 202
Query: 356 KLLTPDMQQIIINGNSEEECKDLLA 380
L+ + ++ EE K L A
Sbjct: 203 DLVIAE----VLPHQKSEEVKKLQA 223
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 298 QTAALIECDLTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGD--KQDTAISIALSC 355
+TA ++ + + G + D L++ A++ L++ GIKV +TGD + AIS L+
Sbjct: 123 KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL 182
Query: 356 KLLTPDMQQIIINGNSEEECKDLLA 380
L+ + ++ EE K L A
Sbjct: 183 DLVIAE----VLPHQKSEEVKKLQA 203
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 298 QTAALIECDLTLLGATGIEDKLQDGVPEAIEALRQAGIKVWVLTGD--KQDTAISIALSC 355
+TA ++ + + G + D L++ A++ L++ GIKV ++TGD + AIS L+
Sbjct: 143 KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 202
Query: 356 KLLTPDMQQIIINGNSEEECKDLLA 380
L+ + ++ EE K L A
Sbjct: 203 DLVIAE----VLPHQKSEEVKKLQA 223
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 313 TGIEDKLQDGVPEAIEALRQAGIKVWVLTGD--KQDTAISIALSCKLLTPDMQQIIINGN 370
TG KL++ A++ L++ GIKV +TGD + AIS L+ L+ + ++
Sbjct: 17 TGTLTKLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNLDLVIAE----VLPHQ 72
Query: 371 SEEECKDLLA 380
EE K L A
Sbjct: 73 KSEEVKKLQA 82
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 491 TLAIGDGANDVSMIQMADVGVGICGQ 516
T+A+GDGAND+S + A + + C +
Sbjct: 162 TVAVGDGANDISXFKKAGLKIAFCAK 187
>pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
Length = 211
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 491 TLAIGDGANDVSMIQMADVGVGICGQ 516
T+A+GDGAND+S + A + + C +
Sbjct: 162 TVAVGDGANDISXFKKAGLKIAFCAK 187
>pdb|1UW7|A Chain A, Nsp9 Protein From Sars-Coronavirus
Length = 143
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 19 YDSSSGSRFQCRTLSINEDLGQIRYIFSDKTGTL 52
Y++S G RF LS ++DL R+ SD TGT+
Sbjct: 62 YNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTI 95
>pdb|1QZ8|A Chain A, Crystal Structure Of Sars Coronavirus Nsp9
pdb|1QZ8|B Chain B, Crystal Structure Of Sars Coronavirus Nsp9
Length = 113
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 19 YDSSSGSRFQCRTLSINEDLGQIRYIFSDKTGTL 52
Y++S G RF LS ++DL R+ SD TGT+
Sbjct: 32 YNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTI 65
>pdb|2D4C|A Chain A, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|B Chain B, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|C Chain C, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|D Chain D, Crystal Structure Of The Endophilin Bar Domain Mutant
Length = 256
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 17/82 (20%)
Query: 189 EGLRLDVLGLHEFDSVRKRMSVVIRFPDNSVKVLVKG-------ADSSMFNILAKDSKRN 241
EG RLD FD +KR + PD ++ ++ A+SSMFN+L D ++
Sbjct: 171 EGRRLD------FDYKKKRQG---KIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQV 221
Query: 242 DLIRHITQSHLSEYSSQGLRTL 263
+ + Q+ L EY Q ++ L
Sbjct: 222 SQLSALVQAQL-EYHKQAVQIL 242
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 481 DLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQE 517
+ +K D LA+GDG D M + AD+G+ + G+E
Sbjct: 143 EFLKRFRDGFILAMGDGYADAKMFERADMGIAV-GRE 178
>pdb|1RKQ|A Chain A, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
pdb|1RKQ|B Chain B, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
Length = 282
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 492 LAIGDGANDVSMIQMADVGVGI 513
+AIGD ND++MI+ A VGV +
Sbjct: 218 MAIGDQENDIAMIEYAGVGVAV 239
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 469 CRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGI 513
V P +KA V ++ + +T +GDG ND + ADVG+ I
Sbjct: 188 AEVLPHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAI 230
>pdb|3EE7|A Chain A, Crystal Structure Of Sars-Cov Nsp9 G104e
pdb|3EE7|B Chain B, Crystal Structure Of Sars-Cov Nsp9 G104e
pdb|3EE7|C Chain C, Crystal Structure Of Sars-Cov Nsp9 G104e
pdb|3EE7|D Chain D, Crystal Structure Of Sars-Cov Nsp9 G104e
Length = 121
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 19 YDSSSGSRFQCRTLSINEDLGQIRYIFSDKTGTL 52
Y++S G RF LS ++DL R+ SD TGT+
Sbjct: 32 YNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTI 65
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 491 TLAIGDGANDVSMIQMADVGV 511
T+A+GDGAND+ M+ A +G+
Sbjct: 342 TVAVGDGANDIDMLAAAGLGI 362
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 491 TLAIGDGANDVSMIQMADVGVG 512
T+A+GDGAND+ M+ A +GV
Sbjct: 264 TVAVGDGANDLVMMAAAGLGVA 285
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 469 CRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGI 513
V P +KA V ++ + +T +GDG ND + ADVG+ I
Sbjct: 188 AEVLPHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAI 230
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 201 FDSVRKRMSVVIRFPDNSVKVLVKGADSSMFNILAKDSKRNDL----------IRHITQS 250
FD R+RMSVV+ +++ KGA + N+ ++ ++ I+ +T +
Sbjct: 64 FDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDT 123
Query: 251 HLSEYSSQGLRTLVVASRDLADEE 274
+ QGLR + VA++ L E
Sbjct: 124 ----LNRQGLRVVAVATKYLPARE 143
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 492 LAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDF 527
+A GDG ND+ M++ A +GV + G + +DF
Sbjct: 214 MACGDGGNDIPMLKAAGIGVAM-GNASEKVQSVADF 248
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 487 TDDMTLAIGDGANDVSMIQMADVGV 511
T + +AIGDG ND+S I+ A GV
Sbjct: 212 TREEVIAIGDGYNDLSXIKFAGXGV 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,678,517
Number of Sequences: 62578
Number of extensions: 683588
Number of successful extensions: 1797
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1712
Number of HSP's gapped (non-prelim): 91
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)