Query 041226
Match_columns 213
No_of_seqs 120 out of 1256
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02473 glutathione S-transfe 100.0 5.2E-43 1.1E-47 260.7 24.3 212 1-212 1-212 (214)
2 PLN02395 glutathione S-transfe 100.0 7.3E-41 1.6E-45 249.4 23.9 211 1-212 1-211 (215)
3 PRK09481 sspA stringent starva 100.0 1.5E-40 3.3E-45 246.7 21.6 192 2-211 10-202 (211)
4 PRK13972 GSH-dependent disulfi 100.0 1.4E-39 3.1E-44 242.2 18.6 198 3-212 2-206 (215)
5 PRK15113 glutathione S-transfe 100.0 6E-39 1.3E-43 238.6 19.2 201 2-212 5-209 (214)
6 PRK10542 glutathionine S-trans 100.0 8.6E-38 1.9E-42 230.6 18.2 194 3-211 1-197 (201)
7 TIGR01262 maiA maleylacetoacet 100.0 3.2E-37 7E-42 229.0 21.0 201 4-211 1-204 (210)
8 PRK11752 putative S-transferas 100.0 1.3E-36 2.7E-41 232.1 22.5 199 2-211 44-258 (264)
9 COG0625 Gst Glutathione S-tran 100.0 1.9E-36 4E-41 224.9 21.3 194 3-206 1-199 (211)
10 KOG0406 Glutathione S-transfer 100.0 3.3E-36 7.2E-41 218.6 19.7 194 3-211 10-211 (231)
11 KOG0867 Glutathione S-transfer 100.0 4.7E-36 1E-40 223.6 19.3 206 1-211 1-209 (226)
12 PRK10357 putative glutathione 100.0 6.8E-36 1.5E-40 220.6 19.8 198 3-211 1-200 (202)
13 KOG0868 Glutathione S-transfer 100.0 6.9E-36 1.5E-40 204.4 15.3 199 3-211 6-207 (217)
14 PTZ00057 glutathione s-transfe 100.0 2.6E-33 5.7E-38 207.0 19.2 186 3-212 5-200 (205)
15 TIGR00862 O-ClC intracellular 100.0 9.4E-33 2E-37 205.5 19.4 180 9-211 17-220 (236)
16 PLN02378 glutathione S-transfe 100.0 8.6E-33 1.9E-37 205.2 16.1 177 8-211 17-199 (213)
17 PRK10387 glutaredoxin 2; Provi 100.0 2.4E-32 5.3E-37 202.8 14.8 189 3-205 1-207 (210)
18 KOG1695 Glutathione S-transfer 100.0 5.5E-31 1.2E-35 190.3 17.8 196 1-211 1-200 (206)
19 PLN02817 glutathione dehydroge 100.0 5.5E-31 1.2E-35 200.1 17.1 176 9-210 71-250 (265)
20 KOG4420 Uncharacterized conser 100.0 5.4E-30 1.2E-34 185.4 14.8 207 3-211 27-287 (325)
21 TIGR02182 GRXB Glutaredoxin, G 100.0 6.6E-30 1.4E-34 189.2 12.6 187 4-205 1-206 (209)
22 PLN02907 glutamate-tRNA ligase 99.9 3.6E-25 7.7E-30 187.2 18.4 157 1-204 1-159 (722)
23 KOG1422 Intracellular Cl- chan 99.9 1.7E-21 3.6E-26 137.6 14.9 181 8-211 18-205 (221)
24 cd03052 GST_N_GDAP1 GST_N fami 99.9 3.5E-22 7.7E-27 122.8 8.5 73 3-75 1-73 (73)
25 cd03045 GST_N_Delta_Epsilon GS 99.9 3.3E-21 7.1E-26 119.3 8.7 74 3-76 1-74 (74)
26 cd03050 GST_N_Theta GST_N fami 99.9 5.7E-21 1.2E-25 118.8 9.3 76 3-78 1-76 (76)
27 cd03053 GST_N_Phi GST_N family 99.9 5.8E-21 1.3E-25 118.8 9.1 76 2-77 1-76 (76)
28 cd03048 GST_N_Ure2p_like GST_N 99.8 1E-20 2.2E-25 119.1 9.5 77 2-79 1-80 (81)
29 PF13417 GST_N_3: Glutathione 99.8 1.6E-20 3.4E-25 116.4 8.6 73 5-80 1-73 (75)
30 cd03041 GST_N_2GST_N GST_N fam 99.8 1.4E-20 2.9E-25 117.3 8.0 75 2-78 1-77 (77)
31 cd03056 GST_N_4 GST_N family, 99.8 2.5E-20 5.3E-25 115.1 8.5 73 3-75 1-73 (73)
32 cd03047 GST_N_2 GST_N family, 99.8 3E-20 6.4E-25 114.6 8.4 73 3-75 1-73 (73)
33 PF02798 GST_N: Glutathione S- 99.8 3.7E-20 7.9E-25 114.9 8.6 74 1-76 1-76 (76)
34 cd03059 GST_N_SspA GST_N famil 99.8 5.2E-20 1.1E-24 113.6 9.0 73 3-78 1-73 (73)
35 cd03061 GST_N_CLIC GST_N famil 99.8 7.8E-20 1.7E-24 115.5 8.7 69 9-80 20-88 (91)
36 cd03044 GST_N_EF1Bgamma GST_N 99.8 1E-19 2.2E-24 112.8 8.8 73 3-76 1-74 (75)
37 cd03058 GST_N_Tau GST_N family 99.8 1E-19 2.2E-24 112.5 8.8 73 3-78 1-74 (74)
38 cd03057 GST_N_Beta GST_N famil 99.8 1.1E-19 2.4E-24 113.3 9.0 76 3-79 1-77 (77)
39 cd03046 GST_N_GTT1_like GST_N 99.8 1.3E-19 2.9E-24 112.7 9.2 76 3-79 1-76 (76)
40 cd03051 GST_N_GTT2_like GST_N 99.8 6.9E-20 1.5E-24 113.4 7.9 73 3-75 1-74 (74)
41 cd03076 GST_N_Pi GST_N family, 99.8 4.6E-20 1E-24 113.6 6.7 73 2-77 1-73 (73)
42 cd03042 GST_N_Zeta GST_N famil 99.8 1.1E-19 2.5E-24 112.1 8.4 73 3-75 1-73 (73)
43 cd03060 GST_N_Omega_like GST_N 99.8 5E-19 1.1E-23 108.5 8.3 69 3-74 1-70 (71)
44 cd03039 GST_N_Sigma_like GST_N 99.8 2.2E-19 4.8E-24 110.4 6.4 72 3-76 1-72 (72)
45 cd03075 GST_N_Mu GST_N family, 99.8 8.5E-19 1.8E-23 110.3 8.0 76 3-78 1-82 (82)
46 cd03037 GST_N_GRX2 GST_N famil 99.8 7.1E-19 1.5E-23 107.9 7.4 70 3-76 1-71 (71)
47 cd03187 GST_C_Phi GST_C family 99.8 7.2E-18 1.6E-22 113.8 12.3 117 92-209 2-118 (118)
48 PF13409 GST_N_2: Glutathione 99.8 1.5E-18 3.3E-23 105.8 7.9 68 10-77 1-70 (70)
49 cd03055 GST_N_Omega GST_N fami 99.8 1.8E-18 3.9E-23 110.6 8.1 72 1-75 17-89 (89)
50 KOG3029 Glutathione S-transfer 99.8 2.3E-17 4.9E-22 121.5 14.6 194 3-202 91-355 (370)
51 cd03049 GST_N_3 GST_N family, 99.8 3.1E-18 6.7E-23 105.6 7.7 70 3-75 1-73 (73)
52 cd03038 GST_N_etherase_LigE GS 99.8 2.9E-18 6.3E-23 108.6 7.7 71 8-79 13-84 (84)
53 cd03080 GST_N_Metaxin_like GST 99.8 4.7E-18 1E-22 105.2 8.0 68 2-79 1-75 (75)
54 cd03077 GST_N_Alpha GST_N fami 99.8 6.2E-18 1.4E-22 105.6 8.4 71 3-79 2-77 (79)
55 KOG4244 Failed axon connection 99.8 3.3E-17 7.2E-22 120.0 12.9 178 8-202 58-273 (281)
56 cd03178 GST_C_Ure2p_like GST_C 99.7 2E-17 4.4E-22 110.7 10.3 112 92-209 1-112 (113)
57 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.1E-17 2.5E-22 104.2 8.3 72 3-79 2-77 (77)
58 COG0435 ECM4 Predicted glutath 99.7 3E-17 6.5E-22 120.7 10.4 197 3-211 52-286 (324)
59 cd03043 GST_N_1 GST_N family, 99.7 2.1E-17 4.5E-22 101.7 7.8 68 7-75 6-73 (73)
60 cd03188 GST_C_Beta GST_C famil 99.7 4.2E-17 9.2E-22 109.3 8.4 113 92-209 2-114 (114)
61 cd03186 GST_C_SspA GST_N famil 99.7 1.8E-16 3.8E-21 105.1 11.0 105 91-208 2-106 (107)
62 cd03196 GST_C_5 GST_C family, 99.7 9.5E-17 2.1E-21 107.7 9.3 111 89-208 3-114 (115)
63 cd03183 GST_C_Theta GST_C fami 99.7 2.5E-16 5.4E-21 107.5 11.2 117 93-211 2-122 (126)
64 COG2999 GrxB Glutaredoxin 2 [P 99.7 5.2E-16 1.1E-20 107.0 11.5 190 3-206 1-208 (215)
65 cd03180 GST_C_2 GST_C family, 99.7 5.9E-16 1.3E-20 103.0 11.1 109 92-205 2-110 (110)
66 cd00570 GST_N_family Glutathio 99.7 2E-16 4.3E-21 96.5 8.1 71 3-75 1-71 (71)
67 cd03182 GST_C_GTT2_like GST_C 99.7 4.1E-16 8.9E-21 105.0 10.0 115 89-205 1-117 (117)
68 cd03181 GST_C_EFB1gamma GST_C 99.7 1E-15 2.2E-20 104.0 11.6 116 92-212 1-117 (123)
69 KOG2903 Predicted glutathione 99.7 2.4E-16 5.2E-21 114.9 8.4 198 3-212 38-289 (319)
70 cd03189 GST_C_GTT1_like GST_C 99.7 1E-15 2.3E-20 103.3 11.0 114 87-203 2-119 (119)
71 cd03191 GST_C_Zeta GST_C famil 99.7 1E-15 2.2E-20 103.7 11.0 116 91-211 2-119 (121)
72 cd03185 GST_C_Tau GST_C family 99.7 9.2E-16 2E-20 104.7 10.5 108 91-211 2-115 (126)
73 cd03190 GST_C_ECM4_like GST_C 99.7 1.1E-15 2.5E-20 106.2 11.1 110 91-211 3-118 (142)
74 cd03054 GST_N_Metaxin GST_N fa 99.7 6.1E-16 1.3E-20 95.0 7.5 65 3-77 1-72 (72)
75 cd03177 GST_C_Delta_Epsilon GS 99.7 1.5E-15 3.3E-20 102.4 10.0 108 92-209 2-110 (118)
76 cd03209 GST_C_Mu GST_C family, 99.6 4.3E-15 9.3E-20 100.6 10.4 108 92-211 2-109 (121)
77 KOG3027 Mitochondrial outer me 99.6 5.3E-14 1.1E-18 99.4 14.5 178 11-202 34-248 (257)
78 cd03184 GST_C_Omega GST_C fami 99.6 7.3E-15 1.6E-19 100.0 9.0 106 92-211 2-113 (124)
79 cd03210 GST_C_Pi GST_C family, 99.6 2.2E-14 4.7E-19 97.9 10.9 107 92-211 3-112 (126)
80 cd03208 GST_C_Alpha GST_C fami 99.6 9.8E-15 2.1E-19 100.8 9.1 110 92-211 3-115 (137)
81 cd03207 GST_C_8 GST_C family, 99.6 4.8E-15 1E-19 97.5 6.7 100 98-211 3-102 (103)
82 cd03198 GST_C_CLIC GST_C famil 99.6 1.8E-14 4E-19 97.9 9.1 82 128-211 22-124 (134)
83 cd03195 GST_C_4 GST_C family, 99.6 1.1E-14 2.3E-19 97.6 7.4 111 91-211 2-113 (114)
84 PF00043 GST_C: Glutathione S- 99.5 3.4E-14 7.4E-19 92.0 8.3 73 129-203 22-95 (95)
85 cd03203 GST_C_Lambda GST_C fam 99.5 2.4E-13 5.3E-18 91.8 11.3 104 89-211 1-111 (120)
86 cd03179 GST_C_1 GST_C family, 99.5 2.8E-14 6.2E-19 94.1 6.0 104 92-200 2-105 (105)
87 cd03200 GST_C_JTV1 GST_C famil 99.5 9.1E-14 2E-18 90.0 7.7 96 71-202 1-96 (96)
88 cd03206 GST_C_7 GST_C family, 99.5 9.3E-14 2E-18 90.9 7.7 99 97-205 2-100 (100)
89 cd03204 GST_C_GDAP1 GST_C fami 99.5 9.6E-14 2.1E-18 91.6 7.3 78 127-205 21-111 (111)
90 cd03079 GST_N_Metaxin2 GST_N f 99.5 1.3E-13 2.7E-18 83.8 7.0 59 10-77 16-74 (74)
91 PF13410 GST_C_2: Glutathione 99.5 3.7E-13 8.1E-18 81.8 7.8 67 131-198 2-69 (69)
92 cd03194 GST_C_3 GST_C family, 99.5 6.2E-13 1.3E-17 89.0 9.0 75 130-210 39-113 (114)
93 cd03201 GST_C_DHAR GST_C famil 99.4 2.4E-13 5.1E-18 91.8 6.6 77 134-211 29-110 (121)
94 cd00299 GST_C_family Glutathio 99.4 2.5E-12 5.3E-17 83.7 6.7 98 97-199 2-100 (100)
95 cd03192 GST_C_Sigma_like GST_C 99.3 7.7E-12 1.7E-16 82.3 8.8 100 92-199 2-104 (104)
96 TIGR02190 GlrX-dom Glutaredoxi 99.3 1.5E-11 3.3E-16 76.7 6.9 72 1-75 8-79 (79)
97 cd03202 GST_C_etherase_LigE GS 99.3 1.5E-11 3.1E-16 83.6 7.0 68 133-202 56-124 (124)
98 cd03193 GST_C_Metaxin GST_C fa 99.3 2.9E-11 6.4E-16 77.0 7.3 67 133-200 17-88 (88)
99 KOG3028 Translocase of outer m 99.3 2.7E-09 5.9E-14 80.7 18.6 179 10-201 16-233 (313)
100 PF14497 GST_C_3: Glutathione 99.2 2.9E-11 6.2E-16 78.9 6.4 66 132-201 32-99 (99)
101 PRK10638 glutaredoxin 3; Provi 99.2 5.6E-11 1.2E-15 74.8 6.9 74 1-76 1-75 (83)
102 cd03078 GST_N_Metaxin1_like GS 99.2 2.2E-10 4.7E-15 70.1 8.3 59 9-77 14-72 (73)
103 cd03205 GST_C_6 GST_C family, 99.2 1.6E-10 3.5E-15 75.1 8.1 95 98-199 3-98 (98)
104 PF14834 GST_C_4: Glutathione 99.1 1.3E-09 2.9E-14 70.5 10.2 114 89-212 1-115 (117)
105 cd03211 GST_C_Metaxin2 GST_C f 99.1 2E-10 4.3E-15 78.1 6.7 68 132-200 54-126 (126)
106 cd03029 GRX_hybridPRX5 Glutare 99.1 7.5E-10 1.6E-14 67.7 7.6 71 2-75 2-72 (72)
107 cd03212 GST_C_Metaxin1_3 GST_C 99.0 1E-09 2.2E-14 75.6 7.2 71 130-201 59-134 (137)
108 PRK10329 glutaredoxin-like pro 99.0 2.4E-09 5.1E-14 66.8 6.7 62 1-65 1-62 (81)
109 cd03027 GRX_DEP Glutaredoxin ( 99.0 2.4E-09 5.2E-14 65.6 6.6 68 3-72 3-70 (73)
110 TIGR02196 GlrX_YruB Glutaredox 98.9 4E-09 8.7E-14 64.5 6.7 71 2-74 1-73 (74)
111 cd02066 GRX_family Glutaredoxi 98.9 4.9E-09 1.1E-13 63.7 6.6 70 2-73 1-70 (72)
112 COG0695 GrxC Glutaredoxin and 98.9 7.5E-09 1.6E-13 64.4 6.4 74 1-74 1-74 (80)
113 cd03197 GST_C_mPGES2 GST_C fam 98.9 6.9E-09 1.5E-13 71.4 6.3 63 137-201 81-145 (149)
114 cd02976 NrdH NrdH-redoxin (Nrd 98.9 6.7E-09 1.5E-13 63.4 5.7 63 3-67 2-64 (73)
115 PRK11200 grxA glutaredoxin 1; 98.8 3.8E-08 8.1E-13 62.2 7.8 77 1-79 1-84 (85)
116 cd03418 GRX_GRXb_1_3_like Glut 98.8 3.1E-08 6.7E-13 60.9 6.7 71 3-75 2-73 (75)
117 TIGR02181 GRX_bact Glutaredoxi 98.7 6E-08 1.3E-12 60.3 6.2 72 3-76 1-72 (79)
118 TIGR02200 GlrX_actino Glutared 98.7 5.5E-08 1.2E-12 60.1 4.9 64 3-68 2-67 (77)
119 cd03419 GRX_GRXh_1_2_like Glut 98.6 2.7E-07 5.9E-12 57.7 6.5 75 2-76 1-76 (82)
120 TIGR02183 GRXA Glutaredoxin, G 98.6 4E-07 8.6E-12 57.6 7.1 75 3-79 2-83 (86)
121 TIGR02194 GlrX_NrdH Glutaredox 98.6 2.5E-07 5.4E-12 56.4 5.8 57 3-62 1-57 (72)
122 TIGR02189 GlrX-like_plant Glut 98.5 3.6E-07 7.8E-12 59.3 6.5 73 2-74 9-82 (99)
123 PF00462 Glutaredoxin: Glutare 98.5 1.4E-07 3.1E-12 55.3 4.1 60 3-64 1-60 (60)
124 PHA03050 glutaredoxin; Provisi 98.4 9.7E-07 2.1E-11 58.1 6.7 70 3-72 15-88 (108)
125 PF10568 Tom37: Outer mitochon 98.4 3.3E-06 7.2E-11 51.2 7.7 55 10-74 13-71 (72)
126 TIGR02180 GRX_euk Glutaredoxin 98.3 2.4E-06 5.1E-11 53.6 6.4 74 3-76 1-77 (84)
127 TIGR00365 monothiol glutaredox 98.2 5.9E-06 1.3E-10 53.4 6.8 71 3-75 14-89 (97)
128 cd03028 GRX_PICOT_like Glutare 98.2 8.9E-06 1.9E-10 51.8 6.9 72 2-75 9-85 (90)
129 KOG1147 Glutamyl-tRNA syntheta 97.9 2.2E-05 4.8E-10 64.1 5.8 160 1-209 1-162 (712)
130 cd03031 GRX_GRX_like Glutaredo 97.8 9.4E-05 2E-09 51.3 6.8 71 3-75 2-82 (147)
131 PRK12759 bifunctional gluaredo 97.8 8.5E-05 1.8E-09 60.6 7.1 69 1-72 1-79 (410)
132 PF04399 Glutaredoxin2_C: Glut 97.6 0.00027 5.9E-09 48.0 6.3 67 134-205 58-124 (132)
133 PRK10824 glutaredoxin-4; Provi 97.5 0.00043 9.4E-09 45.9 6.4 71 3-75 17-92 (115)
134 cd02973 TRX_GRX_like Thioredox 97.5 0.00078 1.7E-08 40.1 6.6 58 2-65 2-64 (67)
135 KOG1752 Glutaredoxin and relat 97.4 0.001 2.3E-08 43.2 6.6 74 3-76 16-90 (104)
136 cd03199 GST_C_GRX2 GST_C famil 97.3 0.001 2.2E-08 44.9 6.0 65 135-204 60-124 (128)
137 PTZ00062 glutaredoxin; Provisi 97.2 0.0015 3.2E-08 48.0 6.7 64 9-74 126-189 (204)
138 PRK01655 spxA transcriptional 97.2 0.00054 1.2E-08 46.8 4.1 33 3-35 2-34 (131)
139 cd03032 ArsC_Spx Arsenate Redu 97.1 0.00081 1.8E-08 44.8 4.3 32 3-34 2-33 (115)
140 cd03036 ArsC_like Arsenate Red 97.1 0.00067 1.5E-08 44.9 3.6 33 3-35 1-33 (111)
141 cd02977 ArsC_family Arsenate R 97.0 0.0011 2.3E-08 43.5 3.8 33 3-35 1-33 (105)
142 COG4545 Glutaredoxin-related p 97.0 0.0036 7.9E-08 37.4 5.4 63 3-65 4-77 (85)
143 COG1393 ArsC Arsenate reductas 96.9 0.0016 3.4E-08 43.5 4.2 34 1-34 1-34 (117)
144 PRK13344 spxA transcriptional 96.9 0.0019 4.2E-08 44.1 4.3 33 3-35 2-34 (132)
145 cd03030 GRX_SH3BGR Glutaredoxi 96.8 0.0071 1.5E-07 38.5 6.3 68 3-72 2-79 (92)
146 PRK12559 transcriptional regul 96.8 0.0022 4.7E-08 43.8 4.2 33 3-35 2-34 (131)
147 PF04908 SH3BGR: SH3-binding, 96.7 0.0053 1.1E-07 39.6 5.3 71 1-73 1-86 (99)
148 TIGR01617 arsC_related transcr 96.6 0.0032 6.9E-08 42.1 3.9 32 3-34 1-32 (117)
149 PRK10026 arsenate reductase; P 96.4 0.005 1.1E-07 42.4 4.0 35 1-35 2-36 (141)
150 TIGR00412 redox_disulf_2 small 96.4 0.041 8.9E-07 33.6 7.7 57 1-65 1-61 (76)
151 cd03035 ArsC_Yffb Arsenate Red 96.4 0.0051 1.1E-07 40.2 3.8 33 3-35 1-33 (105)
152 cd03033 ArsC_15kD Arsenate Red 96.3 0.0064 1.4E-07 40.3 3.8 32 3-34 2-33 (113)
153 PRK10853 putative reductase; P 96.2 0.0089 1.9E-07 40.0 4.0 32 3-34 2-33 (118)
154 cd03026 AhpF_NTD_C TRX-GRX-lik 95.8 0.057 1.2E-06 34.1 6.4 57 3-65 16-77 (89)
155 PF05768 DUF836: Glutaredoxin- 95.8 0.077 1.7E-06 32.8 6.7 55 2-61 1-57 (81)
156 TIGR00411 redox_disulf_1 small 95.7 0.083 1.8E-06 32.4 6.7 57 2-62 2-62 (82)
157 TIGR01616 nitro_assoc nitrogen 95.6 0.023 4.9E-07 38.5 4.0 33 2-34 2-34 (126)
158 PF13192 Thioredoxin_3: Thiore 95.5 0.09 1.9E-06 32.1 6.3 57 1-65 1-61 (76)
159 PHA02125 thioredoxin-like prot 95.2 0.088 1.9E-06 32.0 5.6 51 3-59 2-52 (75)
160 cd03034 ArsC_ArsC Arsenate Red 94.9 0.044 9.5E-07 36.3 3.7 32 3-34 1-32 (112)
161 COG0278 Glutaredoxin-related p 94.8 0.11 2.3E-06 33.3 5.0 68 7-76 26-94 (105)
162 TIGR00014 arsC arsenate reduct 94.7 0.05 1.1E-06 36.1 3.7 32 3-34 1-32 (114)
163 cd01659 TRX_superfamily Thiore 93.6 0.26 5.6E-06 27.6 5.0 53 3-58 1-58 (69)
164 PF11801 Tom37_C: Tom37 C-term 92.5 0.49 1.1E-05 33.8 5.8 38 140-177 113-154 (168)
165 PF03960 ArsC: ArsC family; I 88.9 0.57 1.2E-05 30.8 3.2 29 6-34 1-29 (110)
166 PF11287 DUF3088: Protein of u 87.8 0.93 2E-05 29.7 3.5 68 10-80 23-109 (112)
167 KOG0911 Glutaredoxin-related p 87.2 1.5 3.3E-05 32.5 4.7 68 7-76 150-217 (227)
168 cd02949 TRX_NTR TRX domain, no 86.3 5.1 0.00011 25.3 6.5 58 3-64 17-80 (97)
169 KOG1668 Elongation factor 1 be 85.0 0.99 2.1E-05 33.6 2.8 59 141-206 10-68 (231)
170 PF00085 Thioredoxin: Thioredo 84.4 7.9 0.00017 24.3 8.5 69 3-76 21-102 (103)
171 TIGR03143 AhpF_homolog putativ 83.2 4.6 0.0001 34.7 6.6 56 3-64 480-540 (555)
172 cd02947 TRX_family TRX family; 82.9 8.2 0.00018 23.3 7.1 55 3-63 14-75 (93)
173 cd02975 PfPDO_like_N Pyrococcu 80.8 8.3 0.00018 25.3 5.9 52 3-58 25-80 (113)
174 cd02953 DsbDgamma DsbD gamma f 80.2 4.9 0.00011 25.7 4.6 55 3-58 15-77 (104)
175 PRK15317 alkyl hydroperoxide r 80.2 2 4.2E-05 36.6 3.3 71 3-77 120-197 (517)
176 TIGR01295 PedC_BrcD bacterioci 79.9 15 0.00033 24.5 7.6 62 3-64 27-103 (122)
177 TIGR03140 AhpF alkyl hydropero 79.3 1.7 3.6E-05 37.0 2.7 60 3-66 121-183 (515)
178 TIGR02187 GlrX_arch Glutaredox 77.3 15 0.00033 27.2 7.0 53 3-59 137-192 (215)
179 cd02989 Phd_like_TxnDC9 Phosdu 76.2 15 0.00032 24.2 6.0 59 3-65 26-89 (113)
180 PF09635 MetRS-N: MetRS-N bind 76.1 1.5 3.3E-05 29.2 1.2 28 52-79 34-63 (122)
181 cd02984 TRX_PICOT TRX domain, 72.4 19 0.00041 22.4 5.7 58 3-64 18-81 (97)
182 cd02963 TRX_DnaJ TRX domain, D 71.5 25 0.00054 22.8 6.4 57 3-63 28-91 (111)
183 PF04134 DUF393: Protein of un 68.7 12 0.00027 24.3 4.3 72 5-77 1-77 (114)
184 cd02959 ERp19 Endoplasmic reti 67.3 32 0.00069 22.7 6.1 59 3-65 23-91 (117)
185 PTZ00051 thioredoxin; Provisio 66.5 29 0.00062 21.6 6.2 58 3-64 22-84 (98)
186 COG5515 Uncharacterized conser 65.3 5.7 0.00012 22.9 1.7 23 1-23 1-27 (70)
187 TIGR02187 GlrX_arch Glutaredox 65.3 45 0.00098 24.7 7.2 57 3-63 23-89 (215)
188 PHA03075 glutaredoxin-like pro 63.7 12 0.00027 24.8 3.3 67 2-78 4-70 (123)
189 KOG3425 Uncharacterized conser 63.1 39 0.00084 22.7 5.5 66 8-76 42-121 (128)
190 KOG2501 Thioredoxin, nucleored 59.6 16 0.00035 25.7 3.6 41 7-47 41-88 (157)
191 PHA02278 thioredoxin-like prot 58.7 47 0.001 21.4 6.9 62 3-64 18-85 (103)
192 PF01323 DSBA: DSBA-like thior 57.3 23 0.00049 25.3 4.3 35 2-36 1-40 (193)
193 TIGR02681 phage_pRha phage reg 56.1 14 0.00031 24.2 2.7 26 54-79 2-28 (108)
194 COG2761 FrnE Predicted dithiol 56.0 8.3 0.00018 28.9 1.8 23 2-24 7-29 (225)
195 cd02962 TMX2 TMX2 family; comp 55.6 69 0.0015 22.4 6.5 59 3-65 51-122 (152)
196 cd02997 PDI_a_PDIR PDIa family 54.2 26 0.00056 22.0 3.8 54 3-58 21-80 (104)
197 PRK09381 trxA thioredoxin; Pro 52.5 59 0.0013 20.7 7.0 58 3-64 25-88 (109)
198 PF12290 DUF3802: Protein of u 51.9 41 0.00088 22.2 4.2 88 67-169 8-95 (113)
199 cd02948 TRX_NDPK TRX domain, T 51.4 38 0.00082 21.5 4.2 57 3-64 21-84 (102)
200 COG3019 Predicted metal-bindin 50.6 37 0.00081 23.4 4.0 68 3-78 28-104 (149)
201 PF09413 DUF2007: Domain of un 50.4 15 0.00032 21.4 2.0 33 4-36 2-34 (67)
202 cd02956 ybbN ybbN protein fami 48.9 62 0.0013 19.9 7.0 57 3-63 16-78 (96)
203 cd04911 ACT_AKiii-YclM-BS_1 AC 48.3 22 0.00047 21.7 2.5 26 11-36 15-40 (76)
204 PRK10996 thioredoxin 2; Provis 48.1 86 0.0019 21.3 7.2 59 3-65 56-120 (139)
205 cd02955 SSP411 TRX domain, SSP 47.8 84 0.0018 21.1 5.9 65 3-67 19-97 (124)
206 cd02978 KaiB_like KaiB-like fa 47.6 50 0.0011 19.9 3.9 53 2-58 3-60 (72)
207 cd02951 SoxW SoxW family; SoxW 45.8 85 0.0018 20.6 6.3 16 3-18 18-33 (125)
208 PRK11657 dsbG disulfide isomer 45.7 38 0.00082 25.9 4.0 20 3-22 121-140 (251)
209 KOG2824 Glutaredoxin-related p 45.2 33 0.00072 26.6 3.5 61 13-75 149-213 (281)
210 cd03003 PDI_a_ERdj5_N PDIa fam 44.9 77 0.0017 19.8 5.8 52 3-58 22-77 (101)
211 cd03025 DsbA_FrnE_like DsbA fa 44.4 49 0.0011 23.7 4.3 35 1-35 1-41 (193)
212 cd03020 DsbA_DsbC_DsbG DsbA fa 42.7 45 0.00097 24.2 3.9 21 3-23 81-101 (197)
213 cd02972 DsbA_family DsbA famil 42.5 40 0.00086 20.4 3.3 33 3-35 1-39 (98)
214 PF04564 U-box: U-box domain; 42.2 58 0.0013 19.4 3.7 24 53-77 15-38 (73)
215 cd03004 PDI_a_ERdj5_C PDIa fam 42.0 74 0.0016 20.0 4.5 52 3-58 23-78 (104)
216 PTZ00102 disulphide isomerase; 41.1 2.1E+02 0.0046 23.9 8.2 73 3-79 53-139 (477)
217 PRK10877 protein disulfide iso 41.0 82 0.0018 23.8 5.1 22 3-24 111-132 (232)
218 cd02994 PDI_a_TMX PDIa family, 39.3 95 0.0021 19.3 5.7 52 3-58 20-76 (101)
219 cd02957 Phd_like Phosducin (Ph 39.1 57 0.0012 21.1 3.7 60 3-67 28-92 (113)
220 cd03024 DsbA_FrnE DsbA family, 39.1 47 0.001 24.0 3.6 33 3-35 1-41 (201)
221 PF06110 DUF953: Eukaryotic pr 38.6 36 0.00077 22.8 2.5 62 7-68 34-106 (119)
222 cd03021 DsbA_GSTK DsbA family, 38.1 50 0.0011 24.3 3.6 33 3-35 3-39 (209)
223 KOG4023 Uncharacterized conser 38.0 56 0.0012 21.1 3.2 61 1-61 2-74 (108)
224 COG3118 Thioredoxin domain-con 37.7 2.1E+02 0.0045 22.7 7.0 74 3-80 47-132 (304)
225 cd02996 PDI_a_ERp44 PDIa famil 37.2 1.1E+02 0.0024 19.4 5.0 56 3-62 22-89 (108)
226 PF10022 DUF2264: Uncharacteri 37.1 2.3E+02 0.005 23.1 8.6 133 54-201 98-238 (361)
227 cd02954 DIM1 Dim1 family; Dim1 36.9 1.3E+02 0.0027 20.0 6.1 59 3-65 18-82 (114)
228 cd03022 DsbA_HCCA_Iso DsbA fam 36.5 52 0.0011 23.5 3.4 33 3-35 1-37 (192)
229 TIGR01068 thioredoxin thioredo 36.4 1E+02 0.0022 18.8 8.5 56 3-62 18-79 (101)
230 PF09314 DUF1972: Domain of un 35.4 39 0.00086 24.6 2.6 27 61-87 155-181 (185)
231 PF11823 DUF3343: Protein of u 33.4 76 0.0016 18.9 3.2 35 1-35 1-35 (73)
232 TIGR01130 ER_PDI_fam protein d 33.4 2.7E+02 0.0059 23.0 7.7 73 3-79 22-110 (462)
233 cd02950 TxlA TRX-like protein 33.4 1.1E+02 0.0024 20.9 4.5 60 3-64 24-90 (142)
234 cd02952 TRP14_like Human TRX-r 33.2 1.5E+02 0.0032 19.8 6.6 58 9-66 38-105 (119)
235 PF13098 Thioredoxin_2: Thiore 33.1 43 0.00093 21.4 2.3 34 3-36 9-49 (112)
236 cd02961 PDI_a_family Protein D 32.6 1.2E+02 0.0025 18.3 5.9 52 3-58 19-76 (101)
237 PF15608 PELOTA_1: PELOTA RNA 32.3 1.1E+02 0.0023 19.9 3.9 29 4-32 59-87 (100)
238 TIGR01764 excise DNA binding d 32.3 80 0.0017 16.3 3.2 26 50-75 23-48 (49)
239 COG3011 Predicted thiol-disulf 31.9 1.7E+02 0.0038 20.1 6.8 72 3-78 10-87 (137)
240 PRK09266 hypothetical protein; 31.8 55 0.0012 25.1 3.1 60 20-79 200-259 (266)
241 COG3646 Uncharacterized phage- 31.7 58 0.0013 23.3 2.8 33 128-160 84-116 (167)
242 PF12062 HSNSD: heparan sulfat 31.6 1.3E+02 0.0029 25.4 5.2 50 3-67 63-117 (487)
243 cd02987 Phd_like_Phd Phosducin 31.5 1.1E+02 0.0024 21.9 4.3 60 3-67 87-151 (175)
244 PF06233 Usg: Usg-like family; 31.3 71 0.0015 19.6 2.7 43 158-201 4-50 (82)
245 PF13728 TraF: F plasmid trans 30.4 2.3E+02 0.005 21.1 6.3 32 3-34 124-159 (215)
246 PF11732 Thoc2: Transcription- 30.1 79 0.0017 19.4 2.9 34 166-200 43-76 (77)
247 cd03008 TryX_like_RdCVF Trypar 30.1 90 0.0019 21.7 3.6 48 3-50 29-88 (146)
248 cd02985 TRX_CDSP32 TRX family, 29.1 1.2E+02 0.0026 19.2 3.9 61 3-64 19-84 (103)
249 PF07862 Nif11: Nitrogen fixat 27.7 1E+02 0.0023 16.5 2.9 22 190-211 4-25 (49)
250 PRK06852 aldolase; Validated 27.1 1.5E+02 0.0033 23.5 4.7 56 21-77 197-253 (304)
251 cd03002 PDI_a_MPD1_like PDI fa 27.0 88 0.0019 19.7 3.0 58 3-62 22-85 (109)
252 cd02999 PDI_a_ERp44_like PDIa 26.9 67 0.0014 20.4 2.4 53 3-58 22-77 (100)
253 cd03005 PDI_a_ERp46 PDIa famil 26.8 1.6E+02 0.0035 18.1 6.4 56 3-62 20-84 (102)
254 cd02993 PDI_a_APS_reductase PD 26.8 1.2E+02 0.0025 19.5 3.6 53 3-58 25-83 (109)
255 PF07914 DUF1679: Protein of u 26.3 3.8E+02 0.0083 22.3 7.3 63 85-152 281-343 (414)
256 TIGR02654 circ_KaiB circadian 26.2 1.6E+02 0.0034 18.6 3.8 52 3-58 6-62 (87)
257 cd02965 HyaE HyaE family; HyaE 25.4 1.5E+02 0.0033 19.5 3.8 60 3-66 31-98 (111)
258 TIGR03396 PC_PLC phospholipase 25.1 97 0.0021 27.7 3.6 32 50-81 388-427 (690)
259 PRK00293 dipZ thiol:disulfide 25.1 4.2E+02 0.0092 23.2 7.5 55 3-58 478-539 (571)
260 PRK09301 circadian clock prote 25.0 1.7E+02 0.0037 19.1 3.8 52 3-58 9-65 (103)
261 cd03006 PDI_a_EFP1_N PDIa fami 24.4 1.6E+02 0.0034 19.3 3.8 52 3-58 33-89 (113)
262 cd02992 PDI_a_QSOX PDIa family 24.3 1.3E+02 0.0028 19.6 3.4 54 3-58 23-83 (114)
263 PF12728 HTH_17: Helix-turn-he 24.2 1.3E+02 0.0028 16.1 3.7 28 50-77 23-50 (51)
264 cd02995 PDI_a_PDI_a'_C PDIa fa 23.5 57 0.0012 20.3 1.6 51 3-58 22-78 (104)
265 COG5016 Pyruvate/oxaloacetate 23.1 1.3E+02 0.0028 25.0 3.7 39 1-39 200-238 (472)
266 TIGR01626 ytfJ_HI0045 conserve 22.9 1.9E+02 0.0042 21.0 4.3 24 5-28 65-91 (184)
267 COG1102 Cmk Cytidylate kinase 22.6 1.4E+02 0.003 21.5 3.3 30 1-30 1-30 (179)
268 cd03000 PDI_a_TMX3 PDIa family 22.4 2.1E+02 0.0046 17.9 6.1 52 3-58 19-77 (104)
269 cd02998 PDI_a_ERp38 PDIa famil 22.1 2E+02 0.0044 17.6 4.9 53 3-58 22-80 (105)
270 COG2442 Uncharacterized conser 22.1 28 0.00061 21.4 -0.1 42 150-191 12-55 (79)
271 TIGR01126 pdi_dom protein disu 22.0 2E+02 0.0044 17.5 5.7 52 3-58 17-74 (102)
272 PRK15412 thiol:disulfide inter 21.4 1.3E+02 0.0028 21.6 3.2 33 3-35 72-105 (185)
273 cd02966 TlpA_like_family TlpA- 21.1 66 0.0014 20.0 1.5 22 3-24 23-44 (116)
274 cd06891 PX_Vps17p The phosphoi 21.0 66 0.0014 22.3 1.5 19 188-206 110-128 (140)
275 PF09868 DUF2095: Uncharacteri 20.8 74 0.0016 21.2 1.6 64 13-77 24-90 (128)
276 cd02988 Phd_like_VIAF Phosduci 20.5 1.7E+02 0.0036 21.4 3.7 57 4-67 107-168 (192)
No 1
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=5.2e-43 Score=260.72 Aligned_cols=212 Identities=62% Similarity=1.090 Sum_probs=178.8
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCC
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVN 80 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~ 80 (213)
|.||||+.+.||++++++++|+++||+|+.+.++..++++..+++++.||.|+||+|++||.+|+||.||++||+++++.
T Consensus 1 ~~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~ 80 (214)
T PLN02473 1 MVVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYAD 80 (214)
T ss_pred CceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCC
Confidence 88999999999999999999999999999999998888888899999999999999999999999999999999999975
Q ss_pred CCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 041226 81 QGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGD 160 (213)
Q Consensus 81 ~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 160 (213)
.+..++|.++.+++++++|+.+..+.+.......+....+.+..+........+....++.+.|+.+|++|++++|++|+
T Consensus 81 ~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd 160 (214)
T PLN02473 81 QGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGD 160 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCC
Confidence 33469999999999999999999887766544333333333222334455666777889999999999999988999999
Q ss_pred CcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhhc
Q 041226 161 SFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASLA 212 (213)
Q Consensus 161 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 212 (213)
++|+||+++++.+.++..........+++|+|.+|++++.++|+|+++++.+
T Consensus 161 ~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~~ 212 (214)
T PLN02473 161 EFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMELA 212 (214)
T ss_pred CCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHHh
Confidence 9999999999998876511222234678999999999999999999998765
No 2
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=7.3e-41 Score=249.38 Aligned_cols=211 Identities=57% Similarity=0.968 Sum_probs=174.5
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCC
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVN 80 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~ 80 (213)
|++|||+...| ++++++++|+++|++|+.+.++...+++.+++|++.||.|+||+|+++|.+|+||.+|++||+++++.
T Consensus 1 ~~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~ 79 (215)
T PLN02395 1 MVLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRS 79 (215)
T ss_pred CeEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCC
Confidence 89999997654 69999999999999999999998877788899999999999999999999999999999999999975
Q ss_pred CCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 041226 81 QGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGD 160 (213)
Q Consensus 81 ~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 160 (213)
.++.++|.++.+++++++|+.+....+...+........+....+...+.+..+...+++.+.++.||++|++++|++|+
T Consensus 80 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 159 (215)
T PLN02395 80 QGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGD 159 (215)
T ss_pred CCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Confidence 33469999999999999999998887776654443332222211223445566777888999999999999988999999
Q ss_pred CcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhhc
Q 041226 161 SFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASLA 212 (213)
Q Consensus 161 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 212 (213)
++|+||+++++++.++....+....++.+|+|.+|++++.++|+++++++..
T Consensus 160 ~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 160 FVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred CcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHh
Confidence 9999999999988876411222234677999999999999999999998753
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1.5e-40 Score=246.69 Aligned_cols=192 Identities=20% Similarity=0.327 Sum_probs=163.0
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCC
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQ 81 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~ 81 (213)
+|+||+.+.||+|++++++|+++|++|+.+.++.. +++++|++.||.|+||+|+++|.+|+||.||++||+++++.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~- 85 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPH- 85 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCC-
Confidence 38999999999999999999999999999999874 46789999999999999999999999999999999999984
Q ss_pred CCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 041226 82 GPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDS 161 (213)
Q Consensus 82 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 161 (213)
+.++|.++.++++++.|+.++.+.+....... . ...+...+...+.+.+.|+.+|++|++++|++|++
T Consensus 86 -~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~ 153 (211)
T PRK09481 86 -PPLMPVYPVARGESRLMMHRIEKDWYSLMNKI------V-----NGSASEADAARKQLREELLAIAPVFGEKPYFMSEE 153 (211)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH------h-----cCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 47999999999999999987765443222111 1 12234556777889999999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHhhhhhhhh-ccchhHHHHHHHHhcChhHHHHHhh
Q 041226 162 FTLADLSHLPALRYLMNEAGMAHLV-TQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 162 ~t~aD~~l~~~l~~~~~~~~~~~~~-~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
+|+||+++++.+.++. ..+. +.. +.+|+|++|++++.+||+|++++..
T Consensus 154 ~t~AD~~l~~~~~~~~-~~~~-~~~~~~~p~l~~w~~~~~~rp~~~~~~~~ 202 (211)
T PRK09481 154 FSLVDCYLAPLLWRLP-VLGI-ELSGPGAKELKGYMTRVFERDSFLASLTE 202 (211)
T ss_pred ccHHHHHHHHHHHHHH-hcCC-CCCCCCChhHHHHHHHHhccHHHHHHcCH
Confidence 9999999999998877 5555 332 5699999999999999999998754
No 4
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-39 Score=242.24 Aligned_cols=198 Identities=25% Similarity=0.401 Sum_probs=161.8
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeee-----CC--eeeeehHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIED-----GD--FKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~-----~~--~~l~es~aI~~yL~ 75 (213)
+|||+.+ ++++++|+++|+++||+|+.+.+++.++++..++|+++||.|+||+|++ || .+|+||.||++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 7999887 7899999999999999999999998877888899999999999999986 45 47999999999999
Q ss_pred HhcCCCCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041226 76 AKYVNQGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSN 155 (213)
Q Consensus 76 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~ 155 (213)
++++ .+.|.++.+++++++|+.|..+.+...+.... .+.. ......+...+....++.+.|+.||++|++++
T Consensus 81 ~~~~----~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~ 152 (215)
T PRK13972 81 EKTG----LFLSHETRERAATLQWLFWQVGGLGPMLGQNH---HFNH-AAPQTIPYAIERYQVETQRLYHVLNKRLENSP 152 (215)
T ss_pred HhcC----CCCCCCHHHHHHHHHHHHHHhhccCcceeeee---eeec-cCCCCCchHHHHHHHHHHHHHHHHHHHhccCc
Confidence 9975 47788899999999999998877765432110 0000 01122345566677889999999999999999
Q ss_pred ccccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhhc
Q 041226 156 YLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASLA 212 (213)
Q Consensus 156 ~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 212 (213)
|++|+++|+||+++++.+..+. ..+. ..+.||+|.+|++++.+||+|++++.+.
T Consensus 153 ~l~Gd~~t~ADi~l~~~~~~~~-~~~~--~~~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 153 WLGGENYSIADIACWPWVNAWT-RQRI--DLAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred cccCCCCCHHHHHHHHHHHHHh-hcCC--cchhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 9999999999999988775544 2333 2577999999999999999999988654
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=6e-39 Score=238.63 Aligned_cols=201 Identities=23% Similarity=0.317 Sum_probs=162.3
Q ss_pred eeEEecCC--CCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcC
Q 041226 2 VVKVYGSV--KAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYV 79 (213)
Q Consensus 2 ~~~Ly~~~--~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~ 79 (213)
+++||+.+ .||+|++++++|+++||+|+.+.++..++++..++|++.||.|+||+|++||.+|+||.||++||+++++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~ 84 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFA 84 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcC
Confidence 38999975 7999999999999999999999999988888889999999999999999999999999999999999998
Q ss_pred CCC-CCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccC-CCcc
Q 041226 80 NQG-PNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSK-SNYL 157 (213)
Q Consensus 80 ~~~-~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l 157 (213)
... +.++|.++.+++++++|+.|..+.+.............. + .......+...+++.+.++.+|++|++ ++|+
T Consensus 85 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l 160 (214)
T PRK15113 85 PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFA---G-AKKAPLSEAGKAAAEKLFAVAERLLAPGQPNL 160 (214)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhcc---C-CCCCcccHHHHHHHHHHHHHHHHHHhcCCCEe
Confidence 431 139999999999999999998776543221100000111 1 122233455667789999999999975 4799
Q ss_pred ccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhhc
Q 041226 158 AGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASLA 212 (213)
Q Consensus 158 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 212 (213)
+|+ +|+||+++++.+.++. ..+. . + .|+|.+|++++.+||+|+++++..
T Consensus 161 ~G~-~TlADi~l~~~l~~~~-~~~~-~-~--~p~l~~~~~r~~~rp~~~~~~~~~ 209 (214)
T PRK15113 161 FGE-WCIADTDLALMLNRLV-LHGD-E-V--PERLADYATFQWQRASVQRWLALS 209 (214)
T ss_pred eCC-ccHHHHHHHHHHHHHH-HcCC-C-C--CHHHHHHHHHHhcCHHHHHHHHHh
Confidence 996 9999999999998876 4444 1 2 399999999999999999998764
No 6
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=8.6e-38 Score=230.56 Aligned_cols=194 Identities=24% Similarity=0.387 Sum_probs=160.9
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCC-CCChhhhhhCCCCCCCeee-eCCeeeeehHHHHHHHHHhcCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGE-HKRPEFLLRQPFGQVPVIE-DGDFKLFESRAIIRYYAAKYVN 80 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~P~~~vP~L~-~~~~~l~es~aI~~yL~~~~~~ 80 (213)
|+||+...| ++++++++|+++||+|+.+.+++.+++ ...++|.+.||.|+||+|+ +||.+|+||.+|++||+++++.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 589998866 699999999999999999999987653 4568999999999999998 6889999999999999999984
Q ss_pred CCCCcc-CCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 041226 81 QGPNLL-GNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAG 159 (213)
Q Consensus 81 ~~~~l~-p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 159 (213)
+.++ |.++.+++++++|+.+..+.+...+...+ .+ ...+...+...+.+.+.|+.+|+.|++++|++|
T Consensus 80 --~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 148 (201)
T PRK10542 80 --RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLF-----RP----DTPEEYKPTVRAQLEKKFQYVDEALADEQWICG 148 (201)
T ss_pred --cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhcc-----CC----CChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeC
Confidence 3555 56788999999999988776654432221 11 222334456678899999999999999999999
Q ss_pred CCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 160 DSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 160 ~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
+++|+||+++++.+.+.. ..+. + .+.+|+|.+|++++.++|+++++++.
T Consensus 149 ~~~s~ADi~l~~~~~~~~-~~~~-~-~~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 149 QRFTIADAYLFTVLRWAY-AVKL-N-LEGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred CCCcHHhHHHHHHHHHhh-ccCC-C-cccchHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999999998877 4554 2 46799999999999999999999865
No 7
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=3.2e-37 Score=228.97 Aligned_cols=201 Identities=27% Similarity=0.373 Sum_probs=162.3
Q ss_pred EEecCCCCccHHHHHHHHHHhCCceEEEEcCCC-CCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCCC
Q 041226 4 KVYGSVKAACPQRVLACLLEKGVEFEIVQVDLD-EGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQG 82 (213)
Q Consensus 4 ~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~~ 82 (213)
+||+...||+++++|++|+++||+|+.+.++.. .++++++++.+.||.|+||+|++||.+|+||.+|++||+++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~-- 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPD-- 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCC--
Confidence 589898999999999999999999999999873 34566789999999999999999999999999999999999984
Q ss_pred CCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccC--CCccccC
Q 041226 83 PNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSK--SNYLAGD 160 (213)
Q Consensus 83 ~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~ 160 (213)
+.++|.++.+++++++|+.++...+.............. ..+ .......+...+.+.+.|+.||++|++ ++|++|+
T Consensus 79 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 156 (210)
T TIGR01262 79 PPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLRE-KLG-VEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGD 156 (210)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHh-hcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCC
Confidence 469999999999999999988776654322111111111 001 122233444566799999999999986 4699999
Q ss_pred CcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 161 SFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 161 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
++|+||+++++++.++. ..+. ..+.||+|.+|+++|.++|++++++..
T Consensus 157 ~~T~ADi~~~~~l~~~~-~~~~--~~~~~p~l~~~~~~~~~rp~~~~~~~~ 204 (210)
T TIGR01262 157 TPTLADLCLVPQVYNAE-RFGV--DLTPYPTLRRIAAALAALPAFQRAHPE 204 (210)
T ss_pred CCCHHHHHHHHHHHHHH-HcCC--CcccchHHHHHHHHHhcCHHHHHhCcc
Confidence 99999999999998876 4443 257899999999999999999998764
No 8
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.3e-36 Score=232.14 Aligned_cols=199 Identities=24% Similarity=0.366 Sum_probs=160.2
Q ss_pred eeEEecCCCCccHHHHHHHHHHh------CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeC----CeeeeehHHHH
Q 041226 2 VVKVYGSVKAACPQRVLACLLEK------GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDG----DFKLFESRAII 71 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~------gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~----~~~l~es~aI~ 71 (213)
+|+||+.+ ||++++|+++|+++ |++|+.+.++...+++..++|++.||.|+||+|+++ +.+|+||.||+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 58999976 99999999999997 999999999988777788999999999999999964 36999999999
Q ss_pred HHHHHhcCCCCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHH-hcccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 041226 72 RYYAAKYVNQGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLV-ILPRMGQRSDTALVHNLEQKLEAVLNIYEQR 150 (213)
Q Consensus 72 ~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 150 (213)
+||+++++ .++|.++.+++++++|+.|....... ....+.... ..+ ...+...+....++.+.|+.||++
T Consensus 123 ~YL~~~~~----~L~P~~~~era~v~~wl~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~~le~~ 193 (264)
T PRK11752 123 LYLAEKFG----AFLPKDLAARTETLNWLFWQQGSAPF-LGGGFGHFYAYAP----EKIEYAINRFTMEAKRQLDVLDKQ 193 (264)
T ss_pred HHHHHhcC----CcCCCCHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCC----ccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 49999999999999999987654321 111111111 111 222345566677889999999999
Q ss_pred ccCCCccccCCcchhhhhhhhHHHHHHHhh---hhh--hhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 151 LSKSNYLAGDSFTLADLSHLPALRYLMNEA---GMA--HLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 151 L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~---~~~--~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
|++++|++|+++|+||+++++.+.++. .. ... ...+.||+|.+|++++.++|++++++..
T Consensus 194 L~~~~fl~Gd~~TlADi~l~~~l~~l~-~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~ 258 (264)
T PRK11752 194 LAEHEYIAGDEYTIADIAIWPWYGNLV-LGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIV 258 (264)
T ss_pred hccCCCCCCCccCHHHHHHHHHHHHHh-hccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhc
Confidence 999899999999999999999887765 21 110 1246799999999999999999998764
No 9
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=224.94 Aligned_cols=194 Identities=35% Similarity=0.546 Sum_probs=168.6
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCe-eeeehHHHHHHHHHhcCCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDF-KLFESRAIIRYYAAKYVNQ 81 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~-~l~es~aI~~yL~~~~~~~ 81 (213)
++||+.+.||++++++++|.++|++|+.+.++... +...++|+.+||.|+||+|++++. +|+||.||++||+++++..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 68999999999999999999999999999999987 778899999999999999997665 8999999999999999843
Q ss_pred CCCccCCChH---HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 041226 82 GPNLLGNTLE---EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRS-DTALVHNLEQKLEAVLNIYEQRLSKSNYL 157 (213)
Q Consensus 82 ~~~l~p~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~l 157 (213)
.++|.++. +++++..|+.+..+.+.+.+....... ... ... ..+..+.....+...++.+|+.|++++|+
T Consensus 80 --~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 153 (211)
T COG0625 80 --PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRAL-LGS---EPELLEAALEAARAEIRALLALLEALLADGPYL 153 (211)
T ss_pred --CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh-ccc---cccccHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 39997774 888899999999988888877666554 322 122 56778888999999999999999999999
Q ss_pred ccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHH
Q 041226 158 AGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWK 206 (213)
Q Consensus 158 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 206 (213)
+|+++|+||+++++.+.++. ..+. . .+.+|+|.+|++++.++|+++
T Consensus 154 ~G~~~tiAD~~~~~~~~~~~-~~~~-~-~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 154 AGDRFTIADIALAPLLWRLA-LLGE-E-LADYPALKAWYERVLARPAFR 199 (211)
T ss_pred cCCCCCHHHHHHHHHHHHhh-hcCc-c-cccChHHHHHHHHHHcCCchh
Confidence 99999999999999999877 4444 2 378999999999999999954
No 10
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-36 Score=218.58 Aligned_cols=194 Identities=21% Similarity=0.317 Sum_probs=166.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhC-CCCCCCeeeeCCeeeeehHHHHHHHHHhcCCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQ-PFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQ 81 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~-P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~ 81 (213)
++||++..|||++|++++|++|||+|+.+..+.. ++++++++.| +.++||+|+++|.+|+||..|++||++.++.
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~---~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~- 85 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT---NKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPS- 85 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCC---CCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccC-
Confidence 7999999999999999999999999999999986 3889999999 7999999999999999999999999999995
Q ss_pred CCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhcc-CCCccccC
Q 041226 82 GPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLS-KSNYLAGD 160 (213)
Q Consensus 82 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~ 160 (213)
+++++|.|+.+|+.++.|+.+++..+......... ....+..+...+.+.+.|..||+.|. +++|+.|+
T Consensus 86 ~~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~----------~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~ 155 (231)
T KOG0406|consen 86 GPPILPSDPYERAQARFWAEYIDKKVFFVGRFVVA----------AKGGEEQEAAKEELREALKVLEEELGKGKDFFGGE 155 (231)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHh----------hcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 37999999999999999999999866544433321 23445667778899999999999999 77999999
Q ss_pred CcchhhhhhhhHHHHHHHhhhhh------hhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 161 SFTLADLSHLPALRYLMNEAGMA------HLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 161 ~~t~aD~~l~~~l~~~~~~~~~~------~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
++++.|+++++.+..+. ..... ...+.+|+|.+|.++|.++|++++++.+
T Consensus 156 ~~G~vDi~~~p~~~~~~-~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~ 211 (231)
T KOG0406|consen 156 TIGFVDIAIGPSFERWL-AVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPD 211 (231)
T ss_pred CcCHhhhhHHhhHHHHH-HHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCC
Confidence 99999999996666655 23221 1245699999999999999999998764
No 11
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-36 Score=223.60 Aligned_cols=206 Identities=39% Similarity=0.614 Sum_probs=180.5
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCC
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVN 80 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~ 80 (213)
|+++||+...|+.++++.++++++|++|+.+.++...+++..++|+++||.|+||+|+|+|..++||.||+.||.++++
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~- 79 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYG- 79 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcC-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-ccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcc-cCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccc
Q 041226 81 QGPN-LLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILP-RMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLA 158 (213)
Q Consensus 81 ~~~~-l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 158 (213)
..+. ++|.+..+++.+++|+.+..+.+..... ....+.+ ..+...+..........+.+.++.+|+.|.++.|+.
T Consensus 80 ~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~ 156 (226)
T KOG0867|consen 80 PLGGILLPKDLKERAIVDQWLEFENGVLDPVTF---ERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLA 156 (226)
T ss_pred CCCcccCCcCHHHHHHHHHHHHhhhcccccccc---cceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCccc
Confidence 5444 9999999999999999999999988743 1111222 223356778888899999999999999999999999
Q ss_pred cCCcchhhhhhhhHHHHHHH-hhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 159 GDSFTLADLSHLPALRYLMN-EAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 159 G~~~t~aD~~l~~~l~~~~~-~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
|+++|+||+.+.+.+..+.. .. .......+|++.+|++++.++|++++....
T Consensus 157 g~~~tlADl~~~~~~~~~~~~~~-~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~ 209 (226)
T KOG0867|consen 157 GDQLTLADLSLASTLSQFQGKFA-TEKDFEKYPKVARWYERIQKRPAYEEANEK 209 (226)
T ss_pred CCcccHHHHHHhhHHHHHhHhhh-hhhhhhhChHHHHHHHHHHhCccHHHHHHH
Confidence 99999999999999999841 22 224577899999999999999999987653
No 12
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=6.8e-36 Score=220.57 Aligned_cols=198 Identities=20% Similarity=0.256 Sum_probs=159.9
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee-eCCeeeeehHHHHHHHHHhcCCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE-DGDFKLFESRAIIRYYAAKYVNQ 81 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~-~~~~~l~es~aI~~yL~~~~~~~ 81 (213)
|+||++..||++++++++|+++|++|+.+.++... .++++.+.||.|+||+|+ ++|.+|+||.+|++||+++++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~---~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~- 76 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN---ADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVA- 76 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC---CchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCC-
Confidence 58999999999999999999999999999888653 335677889999999998 7889999999999999999863
Q ss_pred CCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 041226 82 GPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDS 161 (213)
Q Consensus 82 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 161 (213)
+.++|.++.+++++++|..+..+.+...... +.... .+ +........+...+.+.+.|+.||++|.+++ ++|++
T Consensus 77 -~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~-~~--~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~ 150 (202)
T PRK10357 77 -PAMLPRDPLAALRVRQLEALADGIMDAALVS-VREQA-RP--AAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDT 150 (202)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-Cc--cccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCC
Confidence 4699999999999999988876655443322 22111 11 2233445566778899999999999998878 99999
Q ss_pred cchhhhhhhhHHHHHHHhhhh-hhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 162 FTLADLSHLPALRYLMNEAGM-AHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 162 ~t~aD~~l~~~l~~~~~~~~~-~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
+|+||+++++.+.++. .... ..+...+|+|.+|++++.+||+|+++...
T Consensus 151 ~t~ADi~l~~~l~~~~-~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 151 VNLATIAIACAVGYLN-FRRVAPGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred cCHHHHHHHHHHHHHH-hcccCcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 9999999999998876 3322 12346799999999999999999998653
No 13
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-36 Score=204.36 Aligned_cols=199 Identities=22% Similarity=0.277 Sum_probs=169.8
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCC-CCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEG-EHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQ 81 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~-~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~ 81 (213)
.+||++..|.+++|||++|..+||+|+.++++..++ .+...+|++.||.++||+|++||.+|+||.||++||+++++.
T Consensus 6 piLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~- 84 (217)
T KOG0868|consen 6 PILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPD- 84 (217)
T ss_pred chhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCC-
Confidence 789999999999999999999999999999998876 455679999999999999999999999999999999999994
Q ss_pred CCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccC--CCcccc
Q 041226 82 GPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSK--SNYLAG 159 (213)
Q Consensus 82 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 159 (213)
+.|+|+++..|+.++++...+.+.+.+.-...+...... ........-....+.+.|..||+.|.. +.|-+|
T Consensus 85 -ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~e-----k~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvG 158 (217)
T KOG0868|consen 85 -PPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNE-----KEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVG 158 (217)
T ss_pred -CCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcc-----cccchhhHHHHHHHHHhHHHHHHHHHHccCCcccC
Confidence 699999999999999999999999988755544443322 222222344556678889999999976 589999
Q ss_pred CCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 160 DSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 160 ~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
|++|+||+++.+.+.... .... .+..||-+.+..+.+...|+|+.+...
T Consensus 159 DevtiADl~L~pqv~nA~-rf~v--dl~PYPti~ri~e~l~elpaFq~ahP~ 207 (217)
T KOG0868|consen 159 DEVTIADLCLPPQVYNAN-RFHV--DLTPYPTITRINEELAELPAFQAAHPD 207 (217)
T ss_pred ceeehhhhccchhhhhhh-hccc--cCCcCchHHHHHHHHHhCHHHHhcCCC
Confidence 999999999999999876 4444 367899999999999999999987643
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=2.6e-33 Score=206.96 Aligned_cols=186 Identities=20% Similarity=0.250 Sum_probs=139.4
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhh------h--hhCCCCCCCeeeeCCeeeeehHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEF------L--LRQPFGQVPVIEDGDFKLFESRAIIRYY 74 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~------~--~~~P~~~vP~L~~~~~~l~es~aI~~yL 74 (213)
++||+++.++.++++|++|+++|++|+.+.++. +. +++ . +.||+|+||+|++||.+|+||.||++||
T Consensus 5 ~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~----~~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE----NG-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCeEEEeccc----cc-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 899999999999999999999999999997742 12 232 2 4799999999999999999999999999
Q ss_pred HHhcCCCCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCC
Q 041226 75 AAKYVNQGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKS 154 (213)
Q Consensus 75 ~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 154 (213)
+++++ +.+.+..++..++.+.....+ +.. .+...... .++..+...+.+.+.|+.||+.|+++
T Consensus 80 a~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~--------~~~~~~~~~~~~~~~l~~le~~L~~~ 142 (205)
T PTZ00057 80 SKKYK-----ICGESELNEFYADMIFCGVQD-IHY---KFNNTNLF--------KQNETTFLNEELPKWSGYFENILKKN 142 (205)
T ss_pred HHHcC-----CCCCCHHHHHHHHHHHHHHHH-HHH---HHhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99987 345455444444443322211 111 11100000 11223445678999999999999764
Q ss_pred --CccccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhhc
Q 041226 155 --NYLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASLA 212 (213)
Q Consensus 155 --~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 212 (213)
+|++|+++|+||+++++++.++. .. .+..++.||+|.+|++++.++|+++++++..
T Consensus 143 ~~~~l~Gd~~T~AD~~l~~~~~~~~-~~-~~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~ 200 (205)
T PTZ00057 143 HCNYFVGDNLTYADLAVFNLYDDIE-TK-YPNSLKNFPLLKAHNEFISNLPNIKNYISNR 200 (205)
T ss_pred CCCeeeCCcccHHHHHHHHHHHHHH-Hh-ChhhhccChhHHHHHHHHHhChHHHHHHHhC
Confidence 79999999999999999988876 22 3344688999999999999999999998753
No 15
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=9.4e-33 Score=205.47 Aligned_cols=180 Identities=20% Similarity=0.232 Sum_probs=141.2
Q ss_pred CCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCC-CCCccC
Q 041226 9 VKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQ-GPNLLG 87 (213)
Q Consensus 9 ~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~-~~~l~p 87 (213)
..||+|++++++|.++||+|+.+.+++.. ++++|+++||.|+||+|+++|.+|+||.+|++||+++++.+ .+.+.|
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~---~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKR---KPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSP 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCC---CCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCC
Confidence 57999999999999999999999999863 56999999999999999999999999999999999999742 245666
Q ss_pred CChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhcc---------------
Q 041226 88 NTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLS--------------- 152 (213)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--------------- 152 (213)
.++..++.... +...+..++ . ...+...+...+.+.+.|+.||++|.
T Consensus 94 ~~~~~~~~~~~--------l~~~~~~~~-----~-----~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~ 155 (236)
T TIGR00862 94 KHPESNTAGLD--------IFAKFSAYI-----K-----NSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDE 155 (236)
T ss_pred CCHHHHHHHHH--------HHHHHHHHH-----H-----cCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 66554442211 111111111 1 11233334555678999999999986
Q ss_pred ---CCCccccCCcchhhhhhhhHHHHHHHhh-----hhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 153 ---KSNYLAGDSFTLADLSHLPALRYLMNEA-----GMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 153 ---~~~~l~G~~~t~aD~~l~~~l~~~~~~~-----~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
+++|+.|+++|+|||++++++.++. .. ++ ++.+.+|+|.+|++++.++|+|+++++.
T Consensus 156 ~~~~~~f~~Gd~~tlaD~~l~p~l~~l~-~~~~~~~~~-~i~~~~p~l~~w~~~~~~~~sf~~t~p~ 220 (236)
T TIGR00862 156 KVSRRKFLDGDELTLADCNLLPKLHIVK-VVAKKYRNF-DIPAEFTGVWRYLSNAYAREEFTNTCPD 220 (236)
T ss_pred cccCCCcccCCccchhhHHHHHHHHHHH-HHHHHHhCc-CccccCchHHHHHHHHhccchHHhhCCC
Confidence 4789999999999999999999998 43 34 4467899999999999999999998753
No 16
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=8.6e-33 Score=205.24 Aligned_cols=177 Identities=25% Similarity=0.303 Sum_probs=135.8
Q ss_pred CCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCCCCCccC
Q 041226 8 SVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQGPNLLG 87 (213)
Q Consensus 8 ~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~~~~l~p 87 (213)
...||||++++++|+++|++|+.+.+++.. ++++|++.||.|+||+|++||.+|+||.+|++||+++++.. .+
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~---~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~--~l-- 89 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSD---KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDP--PL-- 89 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCccc---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCC--CC--
Confidence 456999999999999999999999999853 56799999999999999999999999999999999999842 34
Q ss_pred CChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhcc--CCCccccCCcchh
Q 041226 88 NTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLS--KSNYLAGDSFTLA 165 (213)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~a 165 (213)
.++.++++++..+. ..+..+. .. ... .+...+.+.+.|+.+|+.|+ +++|++|+++|+|
T Consensus 90 ~~~~~~a~i~~~~~-------~~~~~~~-----~~----~~~---~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~A 150 (213)
T PLN02378 90 KTPAEFASVGSNIF-------GTFGTFL-----KS----KDS---NDGSEHALLVELEALENHLKSHDGPFIAGERVSAV 150 (213)
T ss_pred CCHHHHHHHHHHHH-------HHHHHHH-----hc----CCh---hhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchh
Confidence 34566666554221 1111111 11 111 12234577788999999998 4689999999999
Q ss_pred hhhhhhHHHHHHHhh-h-hh--hhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 166 DLSHLPALRYLMNEA-G-MA--HLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 166 D~~l~~~l~~~~~~~-~-~~--~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
|+++++.+.++. .. + .. +..+.+|+|.+|++++.++|++++++..
T Consensus 151 Di~l~~~~~~l~-~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~ 199 (213)
T PLN02378 151 DLSLAPKLYHLQ-VALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTE 199 (213)
T ss_pred hHHHHHHHHHHH-HHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCC
Confidence 999999988866 32 2 11 2346799999999999999999987654
No 17
>PRK10387 glutaredoxin 2; Provisional
Probab=100.00 E-value=2.4e-32 Score=202.79 Aligned_cols=189 Identities=17% Similarity=0.187 Sum_probs=138.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCee-eeCCeeeeehHHHHHHHHHhcCCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVI-EDGDFKLFESRAIIRYYAAKYVNQ 81 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L-~~~~~~l~es~aI~~yL~~~~~~~ 81 (213)
||||+...||+|++++++|+++||||+.+.++.. ++. ...+.||.|+||+| .+||.+|+||.+|++||+++++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~--~~~--~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLAND--DEA--TPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCC--chh--hHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 6899999999999999999999999999988643 222 23578999999999 588999999999999999999842
Q ss_pred CCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHh-------------c-ccCCCCCCH---HHHHHHHHHHHHHH
Q 041226 82 GPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVI-------------L-PRMGQRSDT---ALVHNLEQKLEAVL 144 (213)
Q Consensus 82 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------------~-~~~~~~~~~---~~~~~~~~~~~~~l 144 (213)
+++ . .+++.+++|+.+....+...+...+..... . ........+ .......+++.+.|
T Consensus 77 ---~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (210)
T PRK10387 77 ---LLT-G-KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADL 151 (210)
T ss_pred ---cCC-C-cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHH
Confidence 333 1 257788888887765443332111100000 0 000000000 01134567899999
Q ss_pred HHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhH
Q 041226 145 NIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAW 205 (213)
Q Consensus 145 ~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 205 (213)
+.+|++|++ +|++|+++|+||+++++.+.++. ..+. .+.+|+|.+|++|+.+||++
T Consensus 152 ~~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~-~~~~---~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 152 RALDPLIVK-PNAVNGELSTDDIHLFPILRNLT-LVKG---IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHHHHhcC-ccccCCCCCHHHHHHHHHHhcce-eecC---CCCCHHHHHHHHHHHHHhCC
Confidence 999999987 99999999999999999999987 4322 23479999999999999875
No 18
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.5e-31 Score=190.27 Aligned_cols=196 Identities=28% Similarity=0.300 Sum_probs=159.0
Q ss_pred Ce-eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcC
Q 041226 1 MV-VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYV 79 (213)
Q Consensus 1 M~-~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~ 79 (213)
|+ ++|+|++..+++..+|++++..|++|+++.+....+ +...+...|+|++|+|..||..|.||.||++||+++++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC
Confidence 54 999999999999999999999999999999998642 45556669999999999999999999999999999998
Q ss_pred CCCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHH-HHHHHHHHHHHHHHHhccC--CCc
Q 041226 80 NQGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVH-NLEQKLEAVLNIYEQRLSK--SNY 156 (213)
Q Consensus 80 ~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~~--~~~ 156 (213)
+.++++.+.++++.+.+-..+.....+...... . .....++..+ .......+.+..+++.|+. ++|
T Consensus 78 -----l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~----~--~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgf 146 (206)
T KOG1695|consen 78 -----LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTA----P--EAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGF 146 (206)
T ss_pred -----cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhh----h--hhccchhhhhhhhccchHHHHHHHHHHHHhCCCCe
Confidence 999999999999998876665444423222211 1 1122222222 5566778889999999984 589
Q ss_pred cccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 157 LAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 157 l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
++|+++|+||+.++..+..+. ....++..+.+|+|+++.+++.++|.++++++.
T Consensus 147 lvGd~lT~aDl~i~e~l~~l~-~~~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~ 200 (206)
T KOG1695|consen 147 LVGDKLTWADLVIAEHLDTLE-ELLDPSALDHFPKLKAFKERVSSIPNIKKYLES 200 (206)
T ss_pred eecCcccHHHHHHHHHHHHHH-HhcCchhhccChHHHHHHHHHhcCchHHHHHhc
Confidence 999999999999999999988 432235677899999999999999999999864
No 19
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.98 E-value=5.5e-31 Score=200.12 Aligned_cols=176 Identities=26% Similarity=0.291 Sum_probs=136.3
Q ss_pred CCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCCCCCccCC
Q 041226 9 VKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQGPNLLGN 88 (213)
Q Consensus 9 ~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~~~~l~p~ 88 (213)
..||+|++++++|+++||||+.+.++.. .++++|+++||.|+||+|+++|.+|+||.+|++||+++++.. .+.
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~--~L~-- 143 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDP--PLA-- 143 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCC--CCC--
Confidence 4599999999999999999999999885 367899999999999999988899999999999999999843 443
Q ss_pred ChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccC-CCccccCCcchhhh
Q 041226 89 TLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSK-SNYLAGDSFTLADL 167 (213)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~ 167 (213)
++.+++++.+++.. .+.. .... . ... +...+.+.+.|+.||++|++ ++|++|+++|+||+
T Consensus 144 ~~~era~i~~~l~~-------~~~~-----~~~~--~-~~~----~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi 204 (265)
T PLN02817 144 TPPEKASVGSKIFS-------TFIG-----FLKS--K-DPG----DGTEQALLDELTSFDDYIKENGPFINGEKISAADL 204 (265)
T ss_pred CHHHHHHHHHHHHH-------HHHH-----Hhcc--C-Ccc----hHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHH
Confidence 46677777664321 1111 1111 1 111 12235677889999999975 69999999999999
Q ss_pred hhhhHHHHHHHhhh-hh--hhhccchhHHHHHHHHhcChhHHHHHh
Q 041226 168 SHLPALRYLMNEAG-MA--HLVTQRKHVNAWWDKISSRPAWKKLAS 210 (213)
Q Consensus 168 ~l~~~l~~~~~~~~-~~--~~~~~~p~l~~~~~~~~~~p~~~~~~~ 210 (213)
++++.+.++....+ .. ++.+.+|+|.+|++++.++|+|++++.
T Consensus 205 ~l~p~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~ 250 (265)
T PLN02817 205 SLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRA 250 (265)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCC
Confidence 99999988762122 11 234679999999999999999999875
No 20
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.97 E-value=5.4e-30 Score=185.38 Aligned_cols=207 Identities=24% Similarity=0.348 Sum_probs=155.2
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQG 82 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~~ 82 (213)
+.||.++.|-.+++||+++.+|||+|+...|+...|++..+||..+||.|.||||+++..+|+++.-|++|++++|-++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ge- 105 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGE- 105 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccc-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCccC-CChHHHHHHHHHH---------HHHHc-----ccc-----hhH---HHHHHH---HHhc--c------------
Q 041226 83 PNLLG-NTLEEKALVDQWL---------EVEAH-----NLN-----DLA---FNLVLQ---LVIL--P------------ 122 (213)
Q Consensus 83 ~~l~p-~~~~~~~~~~~~~---------~~~~~-----~l~-----~~~---~~~~~~---~~~~--~------------ 122 (213)
..+.| .+.....++...- .|..+ .+. +.. +..+.. ...+ .
T Consensus 106 r~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~a 185 (325)
T KOG4420|consen 106 RVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLA 185 (325)
T ss_pred ccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 45777 2222222222211 11111 111 001 111100 0000 0
Q ss_pred -------cCCCCCCHHHHHHHHHHHHHHHHHHHHhccC----CCccccCCcchhhhhhhhHHHHHHHhhhhhh--hh-cc
Q 041226 123 -------RMGQRSDTALVHNLEQKLEAVLNIYEQRLSK----SNYLAGDSFTLADLSHLPALRYLMNEAGMAH--LV-TQ 188 (213)
Q Consensus 123 -------~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~----~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~--~~-~~ 188 (213)
......+....++....+...|+.+|+.|.+ ..|++|+++|+||+++.++|+++. .+|+.+ |. ..
T Consensus 186 kqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~-~Lg~e~~yw~~gs 264 (325)
T KOG4420|consen 186 KQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLK-FLGLEKKYWEDGS 264 (325)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHH-HcccHHHhcccCC
Confidence 0001233344556677788888999999988 489999999999999999999999 888753 22 24
Q ss_pred chhHHHHHHHHhcChhHHHHHhh
Q 041226 189 RKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 189 ~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
.|||+.|++|+++|++|++++..
T Consensus 265 rpnle~Yf~rvrrR~sf~kvlg~ 287 (325)
T KOG4420|consen 265 RPNLESYFERVRRRFSFRKVLGD 287 (325)
T ss_pred CccHHHHHHHHHhhhHHHHhhhh
Confidence 89999999999999999999875
No 21
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.97 E-value=6.6e-30 Score=189.19 Aligned_cols=187 Identities=17% Similarity=0.171 Sum_probs=132.5
Q ss_pred EEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee-eCCeeeeehHHHHHHHHHhcCCCC
Q 041226 4 KVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE-DGDFKLFESRAIIRYYAAKYVNQG 82 (213)
Q Consensus 4 ~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~-~~~~~l~es~aI~~yL~~~~~~~~ 82 (213)
|||+...||+|+++|++|+++|++|+.+.+... ++ ....+.||.|+||+|+ +||.+++||.+|++||+++++.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~--~~--~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~-- 74 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLND--DE--ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGE-- 74 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCC--cc--hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCC--
Confidence 689999999999999999999999999876543 22 2347899999999998 8999999999999999999973
Q ss_pred CCccCCChHHHHHHHHHHHHHHcccchhHHHHHH-------------HHHhc-ccCCCCCCH---HHHHHHHHHHHHHHH
Q 041226 83 PNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVL-------------QLVIL-PRMGQRSDT---ALVHNLEQKLEAVLN 145 (213)
Q Consensus 83 ~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~-~~~~~~~~~---~~~~~~~~~~~~~l~ 145 (213)
.+++. ..+.++.+|+.+....+...+...+. ....+ ...+..... ...+.....+.+.|+
T Consensus 75 -~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 151 (209)
T TIGR02182 75 -PLLTG--KVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLE 151 (209)
T ss_pred -ccCCC--CChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHH
Confidence 23332 13566777776655544322211110 00000 000000000 001345677899999
Q ss_pred HHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhhhhhccch-hHHHHHHHHhcChhH
Q 041226 146 IYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRK-HVNAWWDKISSRPAW 205 (213)
Q Consensus 146 ~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~ 205 (213)
.+|++|++++|+. +++|+||+++++.+.++. ..+. . .+| +|.+|++||++++++
T Consensus 152 ~le~~L~~~~~l~-g~~TiADi~l~~~l~~~~-~~~~---~-~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 152 ELDKLIDGPNAVN-GELSEDDILVFPLLRNLT-LVAG---I-NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHHHhCccccC-CCCCHHHHHHHHHhcCee-eecC---C-CCChHHHHHHHHHHHHhCC
Confidence 9999999999995 469999999999998877 3322 1 256 999999999998865
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.94 E-value=3.6e-25 Score=187.22 Aligned_cols=157 Identities=22% Similarity=0.312 Sum_probs=131.5
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee-eCCeeeeehHHHHHHHHHhcC
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE-DGDFKLFESRAIIRYYAAKYV 79 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~-~~~~~l~es~aI~~yL~~~~~ 79 (213)
|+++||+.+.|+ +.++.++|++.|++|+.+. .+|.|+||+|+ +||.+|+||.||++||++.++
T Consensus 1 ~~~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 MEAKLSFPPDSP-PLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred CeEEEEECCCCC-hHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCC
Confidence 889999999885 8889999999999999865 25899999998 688999999999999999987
Q ss_pred CCCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 041226 80 NQGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAG 159 (213)
Q Consensus 80 ~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 159 (213)
. +.|+|.++.+++++++|+.+...... . ..+.+.++.||++|++++||+|
T Consensus 65 ~--~~L~p~d~~erAqV~qWL~~~~~~~~---------------------~-------~~l~~~L~~LE~~L~~rtYLvG 114 (722)
T PLN02907 65 L--PGFYGQDAFESSQVDEWLDYAPTFSS---------------------G-------SEFENACEYVDGYLASRTFLVG 114 (722)
T ss_pred C--cCCCCCCHHHHHHHHHHHHHHhhccc---------------------H-------HHHHHHHHHHHHHhccCCeecC
Confidence 3 47999999999999999988754210 0 1356678999999999999999
Q ss_pred CCcchhhhhhhhHHHHHH-HhhhhhhhhccchhHHHHHHHHhcChh
Q 041226 160 DSFTLADLSHLPALRYLM-NEAGMAHLVTQRKHVNAWWDKISSRPA 204 (213)
Q Consensus 160 ~~~t~aD~~l~~~l~~~~-~~~~~~~~~~~~p~l~~~~~~~~~~p~ 204 (213)
+++|+||+++++.+.... ..... ...+.+|+|.+|++++.++|+
T Consensus 115 d~lTLADIaL~~~L~~~~~~~~~~-~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 115 YSLTIADIAIWSGLAGSGQRWESL-RKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred CCCCHHHHHHHHHHHhhhhhhhcc-cccccCHHHHHHHHHHHhCCC
Confidence 999999999999886652 02222 235679999999999999999
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.7e-21 Score=137.61 Aligned_cols=181 Identities=24% Similarity=0.261 Sum_probs=137.6
Q ss_pred CCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCCCCCccC
Q 041226 8 SVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQGPNLLG 87 (213)
Q Consensus 8 ~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~~~~l~p 87 (213)
...||+|++..+.|.++|++|+.+.|++.+ ++++|+++.|.|++|+|..|+..++||..|.++|+++++.+ -++
T Consensus 18 ~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~---kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p---~~~ 91 (221)
T KOG1422|consen 18 LGDCPFCQRLFMTLELKGVPFKVTTVDLSR---KPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPP---KLP 91 (221)
T ss_pred CCCChhHHHHHHHHHHcCCCceEEEeecCC---CcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCC---CCc
Confidence 346999999999999999999999999963 78999999999999999999999999999999999999943 222
Q ss_pred C-ChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccC---CCccccCCcc
Q 041226 88 N-TLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSK---SNYLAGDSFT 163 (213)
Q Consensus 88 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t 163 (213)
. ++.+.+- +...+...+..++. ...++.-+...+.+.+.|..|+++|+. ++|+.|+++|
T Consensus 92 ~~~~~E~as-------ag~diF~kF~~fi~----------ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt 154 (221)
T KOG1422|consen 92 TLAPPESAS-------AGSDIFAKFSAFIK----------KSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLT 154 (221)
T ss_pred ccCCHHHHh-------hHHHHHHHHHHHHh----------CchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeee
Confidence 2 1222221 11122222222211 122223344456778888999999986 6899999999
Q ss_pred hhhhhhhhHHHHHHHhhhhh---hhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 164 LADLSHLPALRYLMNEAGMA---HLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 164 ~aD~~l~~~l~~~~~~~~~~---~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
.|||.+++-|+.++...+.- ++.+..+.+.+|++.+-++.+|..++..
T Consensus 155 ~aDcsLlPKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~ 205 (221)
T KOG1422|consen 155 LADCSLLPKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPA 205 (221)
T ss_pred eehhhhchhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCch
Confidence 99999999999999644421 3456699999999999999999877643
No 24
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.88 E-value=3.5e-22 Score=122.84 Aligned_cols=73 Identities=32% Similarity=0.495 Sum_probs=69.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
++||+++.|++|+++|++|+++|++|+.+.++...++++.++|.++||.|+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999988777788999999999999999999999999999999984
No 25
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.86 E-value=3.3e-21 Score=119.34 Aligned_cols=74 Identities=34% Similarity=0.524 Sum_probs=70.0
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
++||+.+.||+|++++++|+++|++|+.+.+++..+++..+++.+.||.|++|+|+++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999999877777789999999999999999999999999999999974
No 26
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.85 E-value=5.7e-21 Score=118.81 Aligned_cols=76 Identities=42% Similarity=0.666 Sum_probs=71.1
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhc
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKY 78 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~ 78 (213)
++||+.+.|+++++++++|+++|++|+.+.++...++...+++.+.||.|++|+|+++|.+++||.||++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999987777677899999999999999999999999999999999864
No 27
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.85 E-value=5.8e-21 Score=118.83 Aligned_cols=76 Identities=63% Similarity=1.115 Sum_probs=70.9
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHh
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAK 77 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~ 77 (213)
.++||+.+.||+|+++|++|+++|++|+.+.++...++++++++.+.||.|++|+|+++|..++||.||++||+++
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 3799999999999999999999999999999998766677889999999999999999999999999999999863
No 28
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.85 E-value=1e-20 Score=119.15 Aligned_cols=77 Identities=39% Similarity=0.628 Sum_probs=71.2
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeC---CeeeeehHHHHHHHHHhc
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDG---DFKLFESRAIIRYYAAKY 78 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~---~~~l~es~aI~~yL~~~~ 78 (213)
|++||+.+. |+|++++++|+++|++|+.+.++...+++..++|.+.||.|+||+|+++ |..|+||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 479999985 9999999999999999999999987667788999999999999999976 899999999999999998
Q ss_pred C
Q 041226 79 V 79 (213)
Q Consensus 79 ~ 79 (213)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 29
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.84 E-value=1.6e-20 Score=116.39 Aligned_cols=73 Identities=44% Similarity=0.681 Sum_probs=68.7
Q ss_pred EecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCC
Q 041226 5 VYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVN 80 (213)
Q Consensus 5 Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~ 80 (213)
||+...||||+|+|++|+++||+|+.+.++... ..+++.+.||.|+||+|++||.+++||.+|++||++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCC
Confidence 799999999999999999999999999999753 4789999999999999999999999999999999999984
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.84 E-value=1.4e-20 Score=117.26 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=66.5
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeee--CCeeeeehHHHHHHHHHhc
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIED--GDFKLFESRAIIRYYAAKY 78 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~--~~~~l~es~aI~~yL~~~~ 78 (213)
|++||+.+.||+|++++++|+++||+|+.+.++. +++..+++++.||.|++|+|++ +|.+++||.+|++||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~--~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPK--GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 4799999999999999999999999999988853 3445678999999999999986 4789999999999999874
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.83 E-value=2.5e-20 Score=115.10 Aligned_cols=73 Identities=40% Similarity=0.547 Sum_probs=68.8
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
++||+.+.||+|++++++|+++|++|+.+.++...+++..+++.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987667788999999999999999999999999999999984
No 32
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.83 E-value=3e-20 Score=114.65 Aligned_cols=73 Identities=42% Similarity=0.672 Sum_probs=67.7
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
++||+.+.||++++++++|+++|++|+.+.++...+++..+++.+.||.|++|+|+++|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999999876556677899999999999999999999999999999984
No 33
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.83 E-value=3.7e-20 Score=114.87 Aligned_cols=74 Identities=50% Similarity=0.832 Sum_probs=66.5
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCC-CCCCeeeeC-CeeeeehHHHHHHHHH
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPF-GQVPVIEDG-DFKLFESRAIIRYYAA 76 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~-~~vP~L~~~-~~~l~es~aI~~yL~~ 76 (213)
|+++||..+. .+.++|++|+++|++|+.+.+++..++++.++|++.||. |++|+|+++ |.+|+||.||++||++
T Consensus 1 ~~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 6677777665 799999999999999999999998888888999999999 999999998 9999999999999985
No 34
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.83 E-value=5.2e-20 Score=113.64 Aligned_cols=73 Identities=34% Similarity=0.631 Sum_probs=67.9
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhc
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKY 78 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~ 78 (213)
|+||+.+.||+|++++++|+++|++|+.+.++.. +..+++++.||.|++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999999864 456899999999999999999999999999999999864
No 35
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.82 E-value=7.8e-20 Score=115.54 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=64.5
Q ss_pred CCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCC
Q 041226 9 VKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVN 80 (213)
Q Consensus 9 ~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~ 80 (213)
..||||+++|++|+++||+|+.+.+++. .++++|++.||.|++|+|+++|.+|+||.+|++||++++..
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccC
Confidence 4799999999999999999999999986 36799999999999999999999999999999999999873
No 36
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.82 E-value=1e-19 Score=112.77 Aligned_cols=73 Identities=36% Similarity=0.544 Sum_probs=67.4
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeee-CCeeeeehHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIED-GDFKLFESRAIIRYYAA 76 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~-~~~~l~es~aI~~yL~~ 76 (213)
.+||+++.||++++++++|+++|++|+.+.++...+ +++++|++.||.|++|+|++ +|.+|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 1 GTLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred CeEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 379999999999999999999999999999998654 67899999999999999995 58999999999999986
No 37
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.82 E-value=1e-19 Score=112.53 Aligned_cols=73 Identities=30% Similarity=0.443 Sum_probs=67.0
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCC-CCCCeeeeCCeeeeehHHHHHHHHHhc
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPF-GQVPVIEDGDFKLFESRAIIRYYAAKY 78 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~-~~vP~L~~~~~~l~es~aI~~yL~~~~ 78 (213)
|+||+.+.||+|+++|++|+++|++|+.+.++.. ++.+++.+.||. |++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988764 467889999995 999999999999999999999999864
No 38
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.82 E-value=1.1e-19 Score=113.32 Aligned_cols=76 Identities=37% Similarity=0.472 Sum_probs=69.4
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeC-CeeeeehHHHHHHHHHhcC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDG-DFKLFESRAIIRYYAAKYV 79 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~-~~~l~es~aI~~yL~~~~~ 79 (213)
|+||+.+.| ++++++++|+++|++|+.+.++..++++..+++++.||.|++|+|+++ |..++||.+|++||+++++
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999866 599999999999999999999988777788999999999999999976 8999999999999999864
No 39
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.82 E-value=1.3e-19 Score=112.70 Aligned_cols=76 Identities=42% Similarity=0.651 Sum_probs=69.8
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYV 79 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~ 79 (213)
++||+++. +++++++++|+++|++|+.+.++...++++.+++.+.||.+++|+|+++|..++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999886 57999999999999999999999876677889999999999999999999999999999999999864
No 40
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.82 E-value=6.9e-20 Score=113.36 Aligned_cols=73 Identities=47% Similarity=0.745 Sum_probs=67.5
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee-eCCeeeeehHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE-DGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~-~~~~~l~es~aI~~yL~ 75 (213)
|+||+.+.||+|+++|++|+++|++|+.+.++...++...+++.+.||.|++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999999876666778999999999999998 57889999999999985
No 41
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.81 E-value=4.6e-20 Score=113.64 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=66.3
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHh
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAK 77 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~ 77 (213)
+++||+++.|++|+++|++|+++|++|+.+.++.. ++.+++.+.||.|++|+|+++|.+++||.||++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 57999999999999999999999999999999863 24457889999999999999999999999999999863
No 42
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.81 E-value=1.1e-19 Score=112.09 Aligned_cols=73 Identities=32% Similarity=0.481 Sum_probs=68.7
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
|+||+...|++|+++|++|+++|++|+.+.+++..+++..+++.+.||.|++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987777778999999999999999999999999999999984
No 43
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.79 E-value=5e-19 Score=108.48 Aligned_cols=69 Identities=29% Similarity=0.399 Sum_probs=63.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeee-CCeeeeehHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIED-GDFKLFESRAIIRYY 74 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~-~~~~l~es~aI~~yL 74 (213)
.+||+...||+|++++++|+++|++|+.+.++... +.+++++.||.|+||+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~---~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKN---KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC---CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 37999999999999999999999999999998852 4589999999999999996 499999999999997
No 44
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.79 E-value=2.2e-19 Score=110.43 Aligned_cols=72 Identities=32% Similarity=0.394 Sum_probs=64.5
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
++||+++.|++|+++|++|+++|++|+.+.++...+ ..+++.+.||.|++|+|+++|.+++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW--PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh--hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 589999999999999999999999999999986532 234588999999999999999999999999999974
No 45
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.78 E-value=8.5e-19 Score=110.26 Aligned_cols=76 Identities=28% Similarity=0.298 Sum_probs=65.1
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCC-Chhhhh-----hCCCCCCCeeeeCCeeeeehHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHK-RPEFLL-----RQPFGQVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~-~~~~~~-----~~P~~~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
.+|||+..++.|+++|++|+++||+|+.+.+++.++++. .+++.. .+|.|+||+|++||.+++||.||++||++
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhh
Confidence 379999999999999999999999999999998765543 244442 23999999999999999999999999998
Q ss_pred hc
Q 041226 77 KY 78 (213)
Q Consensus 77 ~~ 78 (213)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 64
No 46
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.78 E-value=7.1e-19 Score=107.87 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=61.2
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeC-CeeeeehHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDG-DFKLFESRAIIRYYAA 76 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~-~~~l~es~aI~~yL~~ 76 (213)
|+||++..||+|+++|++|+++|++|+.+.++.. ......+.+|.+++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~----~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQND----DEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC----chHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 6899999999999999999999999999988753 12345678999999999865 8999999999999974
No 47
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.78 E-value=7.2e-18 Score=113.75 Aligned_cols=117 Identities=57% Similarity=0.972 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (213)
+++++.+|+.|....+.+.+..........+..+...+++..+...+.+.+.|+.||++|++++|++|+++|+||+++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 47889999999988888776655444333332233566777778889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHH
Q 041226 172 ALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLA 209 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 209 (213)
++.++. ..+.....+.+|+|.+|++++.++|++++++
T Consensus 82 ~~~~~~-~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLM-ATPFAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHH-HccchhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 998876 3333234568999999999999999999864
No 48
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.78 E-value=1.5e-18 Score=105.84 Aligned_cols=68 Identities=41% Similarity=0.595 Sum_probs=58.7
Q ss_pred CCccHHHHHHHHHHhCCceEEEEcCC-CCCCCCChhhhhhCCCCCCCeeee-CCeeeeehHHHHHHHHHh
Q 041226 10 KAACPQRVLACLLEKGVEFEIVQVDL-DEGEHKRPEFLLRQPFGQVPVIED-GDFKLFESRAIIRYYAAK 77 (213)
Q Consensus 10 ~s~~~~~~~~~L~~~gi~~~~~~v~~-~~~~~~~~~~~~~~P~~~vP~L~~-~~~~l~es~aI~~yL~~~ 77 (213)
.|||++|++++|+++|++|+...+.. ..+..++++|.+.||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999999844 344556789999999999999996 799999999999999873
No 49
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.77 E-value=1.8e-18 Score=110.63 Aligned_cols=72 Identities=26% Similarity=0.449 Sum_probs=65.3
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeC-CeeeeehHHHHHHHH
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDG-DFKLFESRAIIRYYA 75 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~-~~~l~es~aI~~yL~ 75 (213)
++++||+.+.||+|++++++|+++|++|+.+.++... ..+++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 3589999999999999999999999999999998752 44779999999999999966 899999999999985
No 50
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=121.53 Aligned_cols=194 Identities=18% Similarity=0.238 Sum_probs=122.5
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQG 82 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~~ 82 (213)
++||-+..||||.++|.+|.+.||+|+.+.|++.. ..+ .+.+.+.+||+|...|..+.||.+|+.-|+.....+.
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~----r~e-Ik~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~ 165 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL----RQE-IKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKR 165 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecchh----hhh-ccccccccccEEEeccceechhHHHHHHHHHHhccCC
Confidence 78999999999999999999999999999999752 111 3456789999998766679999999988854332110
Q ss_pred ------CCccC-----------------------------CChHHHHHHHHHHHHHHcccchhHHHHHHH--------HH
Q 041226 83 ------PNLLG-----------------------------NTLEEKALVDQWLEVEAHNLNDLAFNLVLQ--------LV 119 (213)
Q Consensus 83 ------~~l~p-----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~ 119 (213)
..++| .+...+...+.|-.|.++.|.-.+...++. ..
T Consensus 166 q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFe 245 (370)
T KOG3029|consen 166 QDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFE 245 (370)
T ss_pred CCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHH
Confidence 01222 011122234445555554332211111110 00
Q ss_pred hcccCCC-----CCC----------------------HHHHHHHHHHHHHHHHHHHHhc-cCCCccccCCcchhhhhhhh
Q 041226 120 ILPRMGQ-----RSD----------------------TALVHNLEQKLEAVLNIYEQRL-SKSNYLAGDSFTLADLSHLP 171 (213)
Q Consensus 120 ~~~~~~~-----~~~----------------------~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~~ 171 (213)
+-...|. +.. .-.....++.+.+..+.+-..| ++++|+.|++|++||+++++
T Consensus 246 wf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfG 325 (370)
T KOG3029|consen 246 WFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFG 325 (370)
T ss_pred HHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhh
Confidence 0000000 000 0001113456666777777777 45799999999999999999
Q ss_pred HHHHHHHhhhhhhhhccchhHHHHHHHHhcC
Q 041226 172 ALRYLMNEAGMAHLVTQRKHVNAWWDKISSR 202 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 202 (213)
+|+.+. .+.-.+..-...++..|+-+|++.
T Consensus 326 vl~sm~-gc~afkd~~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 326 VLRSME-GCQAFKDCLQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhhHhh-hhhHHHHHHhcchHHHHHHHHHHH
Confidence 999999 454324445688999999999763
No 51
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.76 E-value=3.1e-18 Score=105.61 Aligned_cols=70 Identities=27% Similarity=0.402 Sum_probs=63.9
Q ss_pred eEEecCCCCccHHHHHHHHHH--hCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee-eCCeeeeehHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLE--KGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE-DGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~--~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~-~~~~~l~es~aI~~yL~ 75 (213)
++||+...||+|+++|++|++ +|++|+.+.++.. .+.+++.+.||.|++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8899999999853 3568999999999999998 58899999999999985
No 52
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.76 E-value=2.9e-18 Score=108.63 Aligned_cols=71 Identities=27% Similarity=0.286 Sum_probs=62.1
Q ss_pred CCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeC-CeeeeehHHHHHHHHHhcC
Q 041226 8 SVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDG-DFKLFESRAIIRYYAAKYV 79 (213)
Q Consensus 8 ~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~-~~~l~es~aI~~yL~~~~~ 79 (213)
.++||+|+++|++|+++|++|+.+.++...++...+++ +.||.|++|+|+++ |.+++||.+|++||+++++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 36899999999999999999999999876544444555 78999999999988 8999999999999999864
No 53
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.76 E-value=4.7e-18 Score=105.25 Aligned_cols=68 Identities=26% Similarity=0.307 Sum_probs=61.4
Q ss_pred eeEEecCC-------CCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHH
Q 041226 2 VVKVYGSV-------KAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYY 74 (213)
Q Consensus 2 ~~~Ly~~~-------~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL 74 (213)
|++||++. .||+|++++++|+++|++|+.+.++.. +.||.|++|+|+++|.+++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 36899887 689999999999999999999888641 5899999999999999999999999999
Q ss_pred HHhcC
Q 041226 75 AAKYV 79 (213)
Q Consensus 75 ~~~~~ 79 (213)
+++++
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 54
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.75 E-value=6.2e-18 Score=105.62 Aligned_cols=71 Identities=28% Similarity=0.303 Sum_probs=62.2
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhh-----CCCCCCCeeeeCCeeeeehHHHHHHHHHh
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLR-----QPFGQVPVIEDGDFKLFESRAIIRYYAAK 77 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~-----~P~~~vP~L~~~~~~l~es~aI~~yL~~~ 77 (213)
++||+++.|+.+++++++|+++|++|+.+.++.. +++.+. .|.|+||+|++||.+|+||.||++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHH
Confidence 5899999999999999999999999999998753 233323 36999999999999999999999999999
Q ss_pred cC
Q 041226 78 YV 79 (213)
Q Consensus 78 ~~ 79 (213)
++
T Consensus 76 ~~ 77 (79)
T cd03077 76 YN 77 (79)
T ss_pred cC
Confidence 86
No 55
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.75 E-value=3.3e-17 Score=119.99 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=124.0
Q ss_pred CCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCCCCCccC
Q 041226 8 SVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQGPNLLG 87 (213)
Q Consensus 8 ~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~~~~l~p 87 (213)
.+.||||.++..+|+..+|||+.+...+. ..++.|++|-++-||..+.||.-|..+|.++++.+ ..+|
T Consensus 58 PnLSPfClKvEt~lR~~~IpYE~~~~~~~----------~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~--~~L~ 125 (281)
T KOG4244|consen 58 PNLSPFCLKVETFLRAYDIPYEIVDCSLK----------RRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIP--DDLS 125 (281)
T ss_pred CCCChHHHHHHHHHHHhCCCceeccccce----------eeccCCCcceEEeCCeeccccHHHHHHHHHHcCCC--CCCC
Confidence 45799999999999999999999887652 36889999999999999999999999999999843 3255
Q ss_pred CChHHHHHHHHHHHHHHcccch----------------------------hHHHHH-----HHHHhcccCCCCCCHHHHH
Q 041226 88 NTLEEKALVDQWLEVEAHNLND----------------------------LAFNLV-----LQLVILPRMGQRSDTALVH 134 (213)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~----------------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~ 134 (213)
... ++....+...++..+.. ....++ .....+...|. ...=..+
T Consensus 126 ~e~--~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~-IG~f~~~ 202 (281)
T KOG4244|consen 126 AEQ--RAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGA-IGDFESA 202 (281)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhcc-ccCcCHH
Confidence 333 33333333222221111 111111 11111111111 1111123
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhh----hhh-ccchhHHHHHHHHhcC
Q 041226 135 NLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMA----HLV-TQRKHVNAWWDKISSR 202 (213)
Q Consensus 135 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~----~~~-~~~p~l~~~~~~~~~~ 202 (213)
+..+.+++.|+.++..|++++||.|+++|-+|+.+++.|..+. . ++. +.+ +++|+|..|++|+++.
T Consensus 203 Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~-Y-P~~~~i~d~le~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 203 EIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVY-Y-PFRSHISDLLEGDFPNLLEYCERIRKE 273 (281)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhhee-c-cCCCcHHHHHhhhchHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999999998877 4 432 233 4599999999999864
No 56
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.74 E-value=2e-17 Score=110.74 Aligned_cols=112 Identities=24% Similarity=0.380 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (213)
+++++++|+.|.+..+.+....++......+ ...+...+....++.+.|+.+|+.|++++|++|+++|+||+++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 76 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAP----EKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFP 76 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCC----CCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHH
Confidence 3789999999999999987665543333332 344556777889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHH
Q 041226 172 ALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLA 209 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 209 (213)
.+.+.. ..+. ...+.+|++.+|++++.++|++++++
T Consensus 77 ~~~~~~-~~~~-~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 77 WVRRLE-WIGI-DDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHH-hccc-cchhhchHHHHHHHHHhhCHHHHHhc
Confidence 999887 4544 34577999999999999999999875
No 57
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.74 E-value=1.1e-17 Score=104.15 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=62.5
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeC----CeeeeehHHHHHHHHHhc
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDG----DFKLFESRAIIRYYAAKY 78 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~----~~~l~es~aI~~yL~~~~ 78 (213)
++||+.+.||+|++++++|+++||+|+.+.++.. ..++ .+.||.+++|+|+++ |.+|+||.+|++||+++.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~----~~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV----SRKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch----hHHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 7899999999999999999999999999988753 1223 367999999999854 789999999999999875
Q ss_pred C
Q 041226 79 V 79 (213)
Q Consensus 79 ~ 79 (213)
+
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 3
No 58
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3e-17 Score=120.68 Aligned_cols=197 Identities=22% Similarity=0.290 Sum_probs=146.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc----eEEEEcCCCC-CCCCChh------------------hhhhCC----CCCCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE----FEIVQVDLDE-GEHKRPE------------------FLLRQP----FGQVP 55 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~----~~~~~v~~~~-~~~~~~~------------------~~~~~P----~~~vP 55 (213)
+.||.+-.|||+++..++-++||+. ...+...+.. |....++ |..-.| .-+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 7899999999999999999999974 3333333332 2111111 111112 23599
Q ss_pred eeeeC---CeeeeehHHHHHHHHHhcC---CCCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCC
Q 041226 56 VIEDG---DFKLFESRAIIRYYAAKYV---NQGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSD 129 (213)
Q Consensus 56 ~L~~~---~~~l~es~aI~~yL~~~~~---~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
+|-|. ..+--||..|++.+...|. .....++|.+ .+.+++.+..++...+.+..- +. |....
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVY--------k~--GFA~t 199 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVY--------KA--GFATT 199 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCcee--------ee--cccch
Confidence 99764 4566799999999987664 2245788954 488999998888776655432 21 56788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHH-hhhh----hhhhccchhHHHHHHHHhcChh
Q 041226 130 TALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMN-EAGM----AHLVTQRKHVNAWWDKISSRPA 204 (213)
Q Consensus 130 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~-~~~~----~~~~~~~p~l~~~~~~~~~~p~ 204 (213)
++.-++..+.+.+.|+.||+.|+++.|++|+++|.||+-|++.|.++.. ..+. ..-..+||+|..|++.+-+.|.
T Consensus 200 q~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg 279 (324)
T COG0435 200 QEAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPG 279 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcc
Confidence 8999999999999999999999999999999999999999999988773 1111 1233459999999999999999
Q ss_pred HHHHHhh
Q 041226 205 WKKLASL 211 (213)
Q Consensus 205 ~~~~~~~ 211 (213)
|+++..-
T Consensus 280 ~~~T~df 286 (324)
T COG0435 280 FAETVDF 286 (324)
T ss_pred cccccch
Confidence 9987654
No 59
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.73 E-value=2.1e-17 Score=101.70 Aligned_cols=68 Identities=31% Similarity=0.426 Sum_probs=61.4
Q ss_pred cCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 7 GSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 7 ~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
....|+++++++++|+++|++|+.+.++...+ ...++|.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 45679999999999999999999999987653 356899999999999999999999999999999984
No 60
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.71 E-value=4.2e-17 Score=109.29 Aligned_cols=113 Identities=21% Similarity=0.344 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (213)
+++++++|+.|..+.+.+............+ +....+...+...+++.+.++.+|+.|++++|++|+++|+||+++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWAT--DEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHH
Confidence 4789999999999988877654432211110 11223455677888999999999999998899999999999999999
Q ss_pred HHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHH
Q 041226 172 ALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLA 209 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 209 (213)
.+.++. ..+. ..+++|+|.+|++++.++|++++++
T Consensus 80 ~~~~~~-~~~~--~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 80 VLRWAP-GVGL--DLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHh-hcCC--ChhhChHHHHHHHHHHhCHHhHhhC
Confidence 998877 4433 2467999999999999999999863
No 61
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.71 E-value=1.8e-16 Score=105.15 Aligned_cols=105 Identities=16% Similarity=0.229 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhh
Q 041226 91 EEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHL 170 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~ 170 (213)
.++++++.|+.++.+.+.+.+..... . .++..+.....+.+.|+.||+.|++++|++|+++|+||++++
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~ 70 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEK----------G-RKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALA 70 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----------C-cHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHH
Confidence 46899999999999877766543321 1 145566788899999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHH
Q 041226 171 PALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKL 208 (213)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 208 (213)
+.+.++. ..+. +....+|+|.+|++++.+||+++++
T Consensus 71 ~~~~~~~-~~~~-~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 71 PLLWRLP-ALGI-ELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHHH-HcCC-CCcccchHHHHHHHHHHCCHHHHHh
Confidence 9987665 4554 3335799999999999999999975
No 62
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.71 E-value=9.5e-17 Score=107.65 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhh
Q 041226 89 TLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLS 168 (213)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~ 168 (213)
++.+++++++|+.+....+...+.......... .+..+...+++.+.|+.+|++|++++|++|+++|+||++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~ 74 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYP--------EESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWA 74 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcC--------cccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHH
Confidence 678899999999999998888777665543221 123667788999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhh-hhhhccchhHHHHHHHHhcChhHHHH
Q 041226 169 HLPALRYLMNEAGM-AHLVTQRKHVNAWWDKISSRPAWKKL 208 (213)
Q Consensus 169 l~~~l~~~~~~~~~-~~~~~~~p~l~~~~~~~~~~p~~~~~ 208 (213)
+++.+.++. .... ...++.+|+|.+|++++.++|+|+++
T Consensus 75 l~~~l~~~~-~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 75 IFPFVRQFA-HVDPKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHHHHHH-HhhhcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 999887765 3321 11247899999999999999999986
No 63
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.70 E-value=2.5e-16 Score=107.51 Aligned_cols=117 Identities=27% Similarity=0.450 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcccchhHHHHHHHHHhcccC-CCCCCHHHHHHHHHHHHHHHHHHHHh-ccCCCccccCCcchhhhhhh
Q 041226 93 KALVDQWLEVEAHNLNDLAFNLVLQLVILPRM-GQRSDTALVHNLEQKLEAVLNIYEQR-LSKSNYLAGDSFTLADLSHL 170 (213)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~-L~~~~~l~G~~~t~aD~~l~ 170 (213)
++++++|+.|..+.+...+..........+.. +....++..+...+.+.+.++.+|++ +++++|++|+++|+||++++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 56788999999888876554433333222211 23456777888889999999999997 56578999999999999999
Q ss_pred hHHHHHHHhhhhhhhhccchhHHHHHHHHhc--ChhHHHHHhh
Q 041226 171 PALRYLMNEAGMAHLVTQRKHVNAWWDKISS--RPAWKKLASL 211 (213)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~--~p~~~~~~~~ 211 (213)
+.+.+.. ..+. +..+++|+|.+|++++.+ +|+++++.+.
T Consensus 82 ~~~~~~~-~~~~-~~~~~~p~l~~w~~~~~~~~~p~~~~~~~~ 122 (126)
T cd03183 82 CEIMQPE-AAGY-DVFEGRPKLAAWRKRVKEAGNPLFDEAHKI 122 (126)
T ss_pred HHHHHHH-hcCC-cccccCchHHHHHHHHHHhcchhHHHHHHH
Confidence 9888876 4554 346789999999999999 9999987753
No 64
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.2e-16 Score=106.96 Aligned_cols=190 Identities=17% Similarity=0.163 Sum_probs=125.1
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee-eCCeeeeehHHHHHHHHHhcCCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE-DGDFKLFESRAIIRYYAAKYVNQ 81 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~-~~~~~l~es~aI~~yL~~~~~~~ 81 (213)
|+||-+..||||-++||+.-++|||++.....-+ ..+.-..+-...+||+|+ +||..+.||..|++|+++..+++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nD----De~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLND----DEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccC----cccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 6899999999999999999999999999888754 234445667788999998 88999999999999999998842
Q ss_pred CCCccCCChHHHHHHHHHHHHHH----cccchhHHHHHHHH--------HhcccCC-----CCCCHHHHHHHHHHHHHHH
Q 041226 82 GPNLLGNTLEEKALVDQWLEVEA----HNLNDLAFNLVLQL--------VILPRMG-----QRSDTALVHNLEQKLEAVL 144 (213)
Q Consensus 82 ~~~l~p~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~--------~~~~~~~-----~~~~~~~~~~~~~~~~~~l 144 (213)
+....+ +-.+..|++-+. ..+.+-+...-... .+....+ ....-........++...|
T Consensus 77 ---~lt~~~--~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl 151 (215)
T COG2999 77 ---LLTGKV--RPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADL 151 (215)
T ss_pred ---hhccCc--CHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHH
Confidence 333211 223444444333 33222222111100 0000000 0011111234567788888
Q ss_pred HHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHH
Q 041226 145 NIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWK 206 (213)
Q Consensus 145 ~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 206 (213)
+.++.++.+.. -+...+++-|+.+|++|+.+....|. .=..+++.|+.+|.+...+.
T Consensus 152 ~~l~~Li~~~s-~~n~~l~~ddi~vFplLRnlt~v~gi----~wps~v~dy~~~msektqV~ 208 (215)
T COG2999 152 RALDKLIVGPS-AVNGELSEDDILVFPLLRNLTLVAGI----QWPSRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHHHHHhcCcc-hhccccchhhhhhhHHhccceecccC----CCcHHHHHHHHHHHHhhCcc
Confidence 88988887755 33356999999999999998722222 12357999999998765543
No 65
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.69 E-value=5.9e-16 Score=103.03 Aligned_cols=109 Identities=26% Similarity=0.422 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (213)
+++++++|+.|..+.+.+.+...+......+ +....+...+...+++.+.|+.+|++|++++|++|+++|+||+++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTP--PEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCC--cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHH
Confidence 4788999999999999888766544332221 22345666777889999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhhhhhccchhHHHHHHHHhcChhH
Q 041226 172 ALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAW 205 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 205 (213)
++.... ..+. ..+++|+|.+|++++.++|+|
T Consensus 80 ~~~~~~-~~~~--~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 80 SAYRWF-ELPI--ERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHH-Hccc--ccccCchHHHHHHHHHhCCCC
Confidence 885433 2332 357899999999999999975
No 66
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.69 E-value=2e-16 Score=96.49 Aligned_cols=71 Identities=48% Similarity=0.718 Sum_probs=63.5
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
++||+.+.||+|++++++|+++|++|+.+.++...+. ..++.+.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999865332 2268889999999999999999999999999984
No 67
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.68 E-value=4.1e-16 Score=105.02 Aligned_cols=115 Identities=20% Similarity=0.302 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHHHcccchhHHHHHHHHHhccc-C-CCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhh
Q 041226 89 TLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPR-M-GQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLAD 166 (213)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD 166 (213)
++.+++++++|+.|+.+.+.+.+...+........ . +...+++..+....++.+.|+.||+.|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 36689999999999888877665544432111110 0 124567778889999999999999999998999999999999
Q ss_pred hhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhH
Q 041226 167 LSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAW 205 (213)
Q Consensus 167 ~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 205 (213)
+++++.+.++. ..+. ++...+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~-~~~~-~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAK-VVKL-RVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHH-hcCC-CCccccHHHHHHHHHHHhccCC
Confidence 99999999887 5555 3446799999999999999974
No 68
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.68 E-value=1e-15 Score=104.01 Aligned_cols=116 Identities=25% Similarity=0.362 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (213)
+++++++|+.|..+.+.+.+...+...... .+.+.+..+...+++.+.|+.+|+.|++++|++|+++|+||+++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~ 76 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGI----APYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAG 76 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCc----cCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHH
Confidence 367899999999998888776554432211 2355667788899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh-hhhhccchhHHHHHHHHhcChhHHHHHhhc
Q 041226 172 ALRYLMNEAGM-AHLVTQRKHVNAWWDKISSRPAWKKLASLA 212 (213)
Q Consensus 172 ~l~~~~~~~~~-~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 212 (213)
.+.++. .... ....+.+|++.+|++++.++|+|++++++.
T Consensus 77 ~~~~~~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 117 (123)
T cd03181 77 ALLLGF-TYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEV 117 (123)
T ss_pred HHHHHH-HHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCC
Confidence 998875 3322 123567999999999999999999988653
No 69
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-16 Score=114.95 Aligned_cols=198 Identities=21% Similarity=0.273 Sum_probs=142.6
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc----eEEEEcCC-CCCCCCChh--------------------------hhhhCC-
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE----FEIVQVDL-DEGEHKRPE--------------------------FLLRQP- 50 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~----~~~~~v~~-~~~~~~~~~--------------------------~~~~~P- 50 (213)
+.||.+-.|||++++.+.++.||+. +..+.... ..|....++ |...+|
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~ 117 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPN 117 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCC
Confidence 6799999999999999999999974 44444411 111111110 000111
Q ss_pred ---CCCCCeeeeC---CeeeeehHHHHHHHHH---hcCC----CCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHH
Q 041226 51 ---FGQVPVIEDG---DFKLFESRAIIRYYAA---KYVN----QGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQ 117 (213)
Q Consensus 51 ---~~~vP~L~~~---~~~l~es~aI~~yL~~---~~~~----~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (213)
.-+||||=|- ..+--||..|++.+.. .+.. +.-.|+|.+ .+++++.+..|+...+....-
T Consensus 118 Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGVY----- 190 (319)
T KOG2903|consen 118 YTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGVY----- 190 (319)
T ss_pred CCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCcee-----
Confidence 2249999653 5677899999999993 3321 123578844 588999999888876655432
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCC--ccccCCcchhhhhhhhHHHHHHHh------hhhhhhhccc
Q 041226 118 LVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSN--YLAGDSFTLADLSHLPALRYLMNE------AGMAHLVTQR 189 (213)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~l~~~l~~~~~~------~~~~~~~~~~ 189 (213)
+- |.+..++.-+....++.+.|+.+|+.|+++. |++|+.+|.||+.|++.+.++... .....+.++|
T Consensus 191 ---k~--GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Y 265 (319)
T KOG2903|consen 191 ---KC--GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEY 265 (319)
T ss_pred ---ee--ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccC
Confidence 11 5567788888999999999999999999976 999999999999999988777631 1122355689
Q ss_pred hhHHHHHHHHhc-ChhHHHHHhhc
Q 041226 190 KHVNAWWDKISS-RPAWKKLASLA 212 (213)
Q Consensus 190 p~l~~~~~~~~~-~p~~~~~~~~~ 212 (213)
|+|..|++.+-+ .|+++.+..-.
T Consensus 266 p~l~~~lk~iY~~~~~~~~Ttd~~ 289 (319)
T KOG2903|consen 266 PNLHNWLKNIYWNIPGFSSTTDFN 289 (319)
T ss_pred cHHHHHHHHHHhhccchhhccchh
Confidence 999999999977 89998876543
No 70
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.67 E-value=1e-15 Score=103.35 Aligned_cols=114 Identities=24% Similarity=0.311 Sum_probs=87.0
Q ss_pred CCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCc
Q 041226 87 GNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRM----GQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSF 162 (213)
Q Consensus 87 p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 162 (213)
|.++.+++++++|+.|..+.+.+.+..........+.. +....+...+....++.+.|+.||++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 46788999999999999988887765433222111100 00123445556778899999999999999999999999
Q ss_pred chhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcCh
Q 041226 163 TLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRP 203 (213)
Q Consensus 163 t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 203 (213)
|+||+++++.+.++. ..+. ..+.+|+|.+|++++.++|
T Consensus 82 t~ADi~l~~~~~~~~-~~~~--~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAAL-ARGP--LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHH-HcCc--ccccCchHHHHHHHHhcCC
Confidence 999999999998877 4443 3578999999999999986
No 71
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.67 E-value=1e-15 Score=103.70 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccC--CCccccCCcchhhhh
Q 041226 91 EEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSK--SNYLAGDSFTLADLS 168 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~ 168 (213)
.+++++++|+.|+.+.+.+............. .+ ...+...+...+.+.+.|+.+|+.|++ ++|++|+++|+||++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~ 79 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEE-LG-LDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADIC 79 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHH
Confidence 46899999999999888765333322221110 01 112334455667789999999999984 579999999999999
Q ss_pred hhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 169 HLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
+++.+.++. ..+.+ ++.+|+|.+|++++.++|+|+++++.
T Consensus 80 ~~~~~~~~~-~~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 80 LVPQVYNAR-RFGVD--LSPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred HHHHHHHHH-HhCCC--cccCcHHHHHHHHHHhChhHHHhCcC
Confidence 999998876 44442 47899999999999999999998753
No 72
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.67 E-value=9.2e-16 Score=104.65 Aligned_cols=108 Identities=15% Similarity=0.223 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhh
Q 041226 91 EEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHL 170 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~ 170 (213)
.+++++++|+.+..+.+.+.+...+.. .++..+.....+.+.|+.||++|++++|++|+++|+||++++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~ 70 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAA-----------KGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALG 70 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 468999999999988877765544321 134556678899999999999999899999999999999999
Q ss_pred hHHHHHHHhh----hhhh--hhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 171 PALRYLMNEA----GMAH--LVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 171 ~~l~~~~~~~----~~~~--~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
+.+.++. .. +. + ..+.+|++.+|++++.++|+++++++.
T Consensus 71 ~~~~~~~-~~~~~~~~-~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 115 (126)
T cd03185 71 SFLGWFR-AYEEVGGV-KLLDEEKTPLLAAWAERFLELEAVKEVLPD 115 (126)
T ss_pred HHHHHHH-HHHHHcCc-cccCcccCchHHHHHHHHHhccHHHHhCCC
Confidence 9998876 32 22 2 236699999999999999999998753
No 73
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.67 E-value=1.1e-15 Score=106.24 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhh
Q 041226 91 EEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHL 170 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~ 170 (213)
..++++++|++|....+........ ...+++..+....++.+.|+.||+.|++++|++|+++|+||++++
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~ 72 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAG----------FATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLF 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHh----------hccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHH
Confidence 4588899999999988766543211 134466677888999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhh------hhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 171 PALRYLMNEAGM------AHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 171 ~~l~~~~~~~~~------~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
+.+.++. .... ....+.||+|.+|++++.++|+++++...
T Consensus 73 ~~l~~~~-~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~ 118 (142)
T cd03190 73 TTLIRFD-AVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNF 118 (142)
T ss_pred HHHHHHH-HHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCH
Confidence 9988764 2111 02246799999999999999999998754
No 74
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.65 E-value=6.1e-16 Score=95.00 Aligned_cols=65 Identities=26% Similarity=0.362 Sum_probs=57.8
Q ss_pred eEEecCC-------CCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 3 VKVYGSV-------KAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~-------~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
++||.++ .||+|++++++|+++||||+.+.++.. ..||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 3566665 899999999999999999999998753 17999999999999999999999999998
Q ss_pred Hh
Q 041226 76 AK 77 (213)
Q Consensus 76 ~~ 77 (213)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 74
No 75
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.65 E-value=1.5e-15 Score=102.43 Aligned_cols=108 Identities=24% Similarity=0.399 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (213)
+++++++|+.|..+.+.+.....+....... . ...+...+++.+.|+.||+.|++++|++|+++|+||+++++
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~ 74 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGG----A---EPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVA 74 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcC----C---CCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHH
Confidence 4789999999998888876655544433221 1 22345677899999999999998899999999999999999
Q ss_pred HHHHHHHh-hhhhhhhccchhHHHHHHHHhcChhHHHHH
Q 041226 172 ALRYLMNE-AGMAHLVTQRKHVNAWWDKISSRPAWKKLA 209 (213)
Q Consensus 172 ~l~~~~~~-~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 209 (213)
.+.++. . .+.+ ...+|+|.+|++++.++|++++..
T Consensus 75 ~~~~~~-~~~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 75 TVSTLE-ALLPLD--LSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred HHHHHH-HhcCCC--hhhCchHHHHHHHHHcccchHHHH
Confidence 999987 4 3432 467999999999999999999865
No 76
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.63 E-value=4.3e-15 Score=100.64 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (213)
++++++++++.+.+.... +..++. . ...+...+.....+.+.|+.||++|++++|++|+++|+||+++++
T Consensus 2 e~~~id~~~~~~~d~~~~-~~~~~~----~-----~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~ 71 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMG-LARICY----S-----PDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYE 71 (121)
T ss_pred chHHHHHHHHHHHHHHHH-HHHhhc----C-----cchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHH
Confidence 467888877765553322 222211 1 122455666788899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 172 ALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
++.++. .... ...+.+|+|.+|++++.++|+++++++.
T Consensus 72 ~~~~~~-~~~~-~~~~~~P~l~~~~~rv~~~p~vk~~~~~ 109 (121)
T cd03209 72 ALDQHR-IFEP-DCLDAFPNLKDFLERFEALPKISAYMKS 109 (121)
T ss_pred HHHHHH-HhCc-cccccChHHHHHHHHHHHCHHHHHHHhc
Confidence 999987 4332 3467899999999999999999999865
No 77
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.3e-14 Score=99.40 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=134.5
Q ss_pred CccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCCCCCCccC-CC
Q 041226 11 AACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVNQGPNLLG-NT 89 (213)
Q Consensus 11 s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~~~~~l~p-~~ 89 (213)
...|..+..+|++.++||+.+..+ +.+| ++|.|+||.|..+.+.++|-.+|..++..+-- .+-. -+
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~----~l~s~ls 100 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGV----TLTSWLS 100 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhcc----chhhhhh
Confidence 345999999999999999998865 2455 89999999999999999999999999999843 3333 34
Q ss_pred hHHHHHHHHHHHHHHcccchhHHHHH------HHHHhcccCC-------------------------CCCCHHHHHHHHH
Q 041226 90 LEEKALVDQWLEVEAHNLNDLAFNLV------LQLVILPRMG-------------------------QRSDTALVHNLEQ 138 (213)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 138 (213)
..+++.++..++++...+...-..+. +....+.+.| ..++....+...+
T Consensus 101 E~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie 180 (257)
T KOG3027|consen 101 EDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIE 180 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHH
Confidence 56788888888877765553322111 1111111111 1355556677788
Q ss_pred HHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhh-----hhhccchhHHHHHHHHhcC
Q 041226 139 KLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMA-----HLVTQRKHVNAWWDKISSR 202 (213)
Q Consensus 139 ~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~-----~~~~~~p~l~~~~~~~~~~ 202 (213)
++..+.+.|+.+|+.++||.|++||-+|..+++-+..+. ...++ ..+..|++|-++++|+++.
T Consensus 181 ~vdkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytil-Tt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 181 QVDKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTIL-TTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhh-hhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999888877 34333 3566799999999999763
No 78
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.60 E-value=7.3e-15 Score=99.95 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccC--CCccccCCcchhhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSK--SNYLAGDSFTLADLSH 169 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~l 169 (213)
+|++.+.|+.++...+......+. . ++..+...+.+.+.|+.+|+.|++ ++|++|+++|+||+++
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~ 68 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLG-----------A--PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMI 68 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHh-----------c--cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHh
Confidence 478889999888754444332221 1 233456778899999999999986 7999999999999999
Q ss_pred hhHHHHHHHhhhhh----hhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 170 LPALRYLMNEAGMA----HLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 170 ~~~l~~~~~~~~~~----~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
++++.++. ..+.. ...+.+|+|.+|++++.++|++++++..
T Consensus 69 ~~~~~~~~-~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~ 113 (124)
T cd03184 69 WPWFERLE-ALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTD 113 (124)
T ss_pred hHHHHHHH-HHHhhccccCCcccChHHHHHHHHhccChHHHHHhCC
Confidence 99998877 44321 2357799999999999999999998754
No 79
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.59 E-value=2.2e-14 Score=97.85 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccC---CCccccCCcchhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSK---SNYLAGDSFTLADLS 168 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD~~ 168 (213)
+.+++++++..+.+.. ..+...+. ...+...+...+.+.+.|..||+.|++ ++|++|+++|+||++
T Consensus 3 e~~~vd~~~~~~~d~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~ 71 (126)
T cd03210 3 EAALIDMVNDGVEDLR-LKYVRMIY----------QNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYN 71 (126)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHH
Confidence 5677777766554332 22222111 111334456677799999999999974 589999999999999
Q ss_pred hhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 169 HLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
+++.+.++. .... ..++.+|+|.+|++++.++|+++++++.
T Consensus 72 l~~~~~~~~-~~~~-~~~~~~P~l~~~~~rv~~~p~v~~~~~~ 112 (126)
T cd03210 72 LFDLLDIHL-VLAP-GCLDAFPLLKAFVERLSARPKLKAYLES 112 (126)
T ss_pred HHHHHHHHH-HhCh-HhhhcChHHHHHHHHHHhCcHHHHHHhC
Confidence 999998877 4332 3467899999999999999999999865
No 80
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.59 E-value=9.8e-15 Score=100.84 Aligned_cols=110 Identities=23% Similarity=0.330 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHH-HHHHHHHHHHHHHHHHHhcc--CCCccccCCcchhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTAL-VHNLEQKLEAVLNIYEQRLS--KSNYLAGDSFTLADLS 168 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~ 168 (213)
+.++++++++.+.+.+...... +. ..+ ....+. .....+.+.+.|+.||+.|+ +++|++|+++|+||++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~-~~---~~~----~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~ 74 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILML-PF---LPP----EEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIH 74 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cc---CCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHH
Confidence 5677888877666544332211 11 110 111112 23334467899999999998 6789999999999999
Q ss_pred hhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 169 HLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
+++.+.++. .... ..++.+|+|.+|++++.++|+++++++.
T Consensus 75 l~~~l~~~~-~~~~-~~l~~~P~l~~~~~rv~~~P~vk~~~~~ 115 (137)
T cd03208 75 LLEAILMVE-ELDP-SLLSDFPLLQAFKTRISNLPTIKKFLQP 115 (137)
T ss_pred HHHHHHHHH-Hhch-hhhccChHHHHHHHHHHcCHHHHHHHhc
Confidence 999999977 3333 4467899999999999999999999864
No 81
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.58 E-value=4.8e-15 Score=97.51 Aligned_cols=100 Identities=26% Similarity=0.386 Sum_probs=77.7
Q ss_pred HHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHH
Q 041226 98 QWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLM 177 (213)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~ 177 (213)
+|+.|..+.+.+.+...+. + ..++..+....++.+.++.+|++|++++|++|+++|+||+++++.+.++.
T Consensus 3 ~w~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~ 72 (103)
T cd03207 3 RWLFFYAGVVEPALIAKAM-----G-----IEEPARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGL 72 (103)
T ss_pred eeeeeccccccHHHHHHHc-----C-----CCcchhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHH
Confidence 4555666666665443221 1 11334566778899999999999999999999999999999999999977
Q ss_pred HhhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 178 NEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 178 ~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
..+ ..+.+|+|.+|++++.++|+++++.+.
T Consensus 73 -~~~---~~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 73 -QFG---LLPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred -HcC---CCCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 433 246799999999999999999998764
No 82
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.57 E-value=1.8e-14 Score=97.90 Aligned_cols=82 Identities=24% Similarity=0.356 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhccC----------------CCccccCCcchhhhhhhhHHHHHHHhh-----hhhhhh
Q 041226 128 SDTALVHNLEQKLEAVLNIYEQRLSK----------------SNYLAGDSFTLADLSHLPALRYLMNEA-----GMAHLV 186 (213)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~le~~L~~----------------~~~l~G~~~t~aD~~l~~~l~~~~~~~-----~~~~~~ 186 (213)
.+++..+...+++.+.|+.||++|++ ++|++|+++|+|||.+++.+.++. .+ ++ .+.
T Consensus 22 ~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~-~~~~~~~g~-~i~ 99 (134)
T cd03198 22 SNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVK-VVAKKYRNF-EIP 99 (134)
T ss_pred CChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHhhcCC-Ccc
Confidence 44566677788999999999999986 679999999999999999998876 32 33 234
Q ss_pred ccchhHHHHHHHHhcChhHHHHHhh
Q 041226 187 TQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 187 ~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
+.+|+|.+|++++.+||+|++++..
T Consensus 100 ~~~P~L~aw~~ri~aRPsfk~t~~~ 124 (134)
T cd03198 100 ADLTGLWRYLKNAYQREEFTNTCPA 124 (134)
T ss_pred ccCHHHHHHHHHHHCCHHHHHHcCC
Confidence 6799999999999999999998753
No 83
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.57 E-value=1.1e-14 Score=97.59 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCcchhhhhh
Q 041226 91 EEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLS-KSNYLAGDSFTLADLSH 169 (213)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aD~~l 169 (213)
.+++++++|+.|+.+.+.+..........+. + ....+..+...+.+.+.++.+|..|+ +++|++| .+|+||+++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l 76 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFA---G-AKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDL 76 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceec---C-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHH
Confidence 5689999999999999877621111011011 1 11113345667778888899999995 5589999 599999999
Q ss_pred hhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 170 LPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
++.+.|+. ..+. +. + |++.+|.+|+.+||+|+++++.
T Consensus 77 ~~~~~~~~-~~g~-~l-~--p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 77 ALMLNRLV-LNGD-PV-P--ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred HHHHHHHH-HcCC-CC-C--HHHHHHHHHHHCCHHHHHHHhc
Confidence 99999988 6666 32 3 9999999999999999999875
No 84
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.55 E-value=3.4e-14 Score=91.98 Aligned_cols=73 Identities=29% Similarity=0.628 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhhhhh-ccchhHHHHHHHHhcCh
Q 041226 129 DTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAHLV-TQRKHVNAWWDKISSRP 203 (213)
Q Consensus 129 ~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~-~~~p~l~~~~~~~~~~p 203 (213)
.++..+....++.+.|+.+|+.|++++|++|+++|+||+++++.+.++. ..+. ... +++|+|.+|++++.+||
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~-~~~~-~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLE-RLGP-DFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHH-HHTT-TTTHTTSHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHH-HhCC-CcccccCHHHHHHHHHHHcCC
Confidence 3456777889999999999999999999999999999999999999988 6665 444 88999999999999998
No 85
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.53 E-value=2.4e-13 Score=91.82 Aligned_cols=104 Identities=17% Similarity=0.314 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhcc---CCCccccCCcchh
Q 041226 89 TLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLS---KSNYLAGDSFTLA 165 (213)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~a 165 (213)
|+.+|+++++++.|.. .+...+....+. + .. .+.+.+.++.||+.|+ +++|++| ++|+|
T Consensus 1 d~~~ra~~~~~~~~~~-----~~~~~~~~~~~~---~-~~--------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlA 62 (120)
T cd03203 1 DPAKREFADELLAYTD-----AFTKALYSSLIK---G-DP--------SAEAAAALDYIENALSKFDDGPFFLG-QFSLV 62 (120)
T ss_pred CHHHHHHHHHHHHHHH-----HHHHHHHHHHhc---C-Cc--------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHH
Confidence 4668999999998821 122222221121 1 11 1234566777777776 4799999 99999
Q ss_pred hhhhhhHHHHHHH----hhhhhhhhccchhHHHHHHHHhcChhHHHHHhh
Q 041226 166 DLSHLPALRYLMN----EAGMAHLVTQRKHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 166 D~~l~~~l~~~~~----~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
|+++++++.++.. ..+. ++.+++|+|.+|++++.++|+++++...
T Consensus 63 Di~l~~~~~~~~~~~~~~~~~-~~~~~~P~l~~W~~~~~~rp~~~~~~~~ 111 (120)
T cd03203 63 DIAYVPFIERFQIFLSELFNY-DITEGRPNLAAWIEEMNKIEAYTQTKQD 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-cccccCcHHHHHHHHHhcchHHHhHcCC
Confidence 9999999987651 1233 3446899999999999999999998763
No 86
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.52 E-value=2.8e-14 Score=94.08 Aligned_cols=104 Identities=25% Similarity=0.380 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLP 171 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (213)
+++++++|+.|..+.+.+....+.......+ ....+++..+...+++.+.++.||+.|++++|++|+++|+||+++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~ 79 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLG--LGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAA 79 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeecc--CCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHH
Confidence 4789999999998888776544332222111 23556677888999999999999999988899999999999999999
Q ss_pred HHHHHHHhhhhhhhhccchhHHHHHHHHh
Q 041226 172 ALRYLMNEAGMAHLVTQRKHVNAWWDKIS 200 (213)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~ 200 (213)
.+.++. ..+. + ...+|+|.+|+++++
T Consensus 80 ~~~~~~-~~~~-~-~~~~p~l~~~~~~~~ 105 (105)
T cd03179 80 YTHVAD-EGGF-D-LADYPAIRAWLARIE 105 (105)
T ss_pred HHHhcc-ccCC-C-hHhCccHHHHHHhhC
Confidence 999987 4554 2 567999999999874
No 87
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.51 E-value=9.1e-14 Score=89.95 Aligned_cols=96 Identities=22% Similarity=0.368 Sum_probs=75.1
Q ss_pred HHHHHHhcCCCCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 041226 71 IRYYAAKYVNQGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQR 150 (213)
Q Consensus 71 ~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 150 (213)
++||++.. .++|.++.+.+.+++|+++....+.. ...+.+.+.++.+|++
T Consensus 1 ~r~~~~~~-----~~~~~~~~~~~~vd~~~d~~~~~l~~-------------------------~~~~~~~~~l~~le~~ 50 (96)
T cd03200 1 ARFLYRLL-----GPAPNAPNAATNIDSWVDTAIFQLAE-------------------------GSSKEKAAVLRALNSA 50 (96)
T ss_pred CchHHHHh-----cccCCCchHHHHHHHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHH
Confidence 47889883 39999999999999999865533210 1234566788899999
Q ss_pred ccCCCccccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcC
Q 041226 151 LSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSR 202 (213)
Q Consensus 151 L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 202 (213)
|++++|++|+++|+||+++++.+.+. +. ..+.+|+|.+|++++.++
T Consensus 51 L~~~~fl~Gd~~tiADi~l~~~l~~~----~~--~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 51 LGRSPWLVGSEFTVADIVSWCALLQT----GL--ASAAPANVQRWLKSCENL 96 (96)
T ss_pred HcCCCccCCCCCCHHHHHHHHHHHHc----cc--ccccChHHHHHHHHHHhC
Confidence 99999999999999999999887652 22 135799999999999763
No 88
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.50 E-value=9.3e-14 Score=90.86 Aligned_cols=99 Identities=21% Similarity=0.364 Sum_probs=73.6
Q ss_pred HHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHH
Q 041226 97 DQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYL 176 (213)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~ 176 (213)
++|+.|..+.+.+............. ....+....++.+.++.+|+.|++++|++|+++|+||+++++++.+.
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~ 74 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFGA-------PLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALA 74 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhCC-------HhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHH
Confidence 46777777777644333222222211 12345678899999999999999999999999999999999998775
Q ss_pred HHhhhhhhhhccchhHHHHHHHHhcChhH
Q 041226 177 MNEAGMAHLVTQRKHVNAWWDKISSRPAW 205 (213)
Q Consensus 177 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 205 (213)
. ..+. ..+.+|+|.+|++++.++|+|
T Consensus 75 ~-~~~~--~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 75 P-EGGV--DLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred h-ccCC--ChhhCcHHHHHHHHHHhCcCC
Confidence 5 3222 246799999999999999975
No 89
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.50 E-value=9.6e-14 Score=91.57 Aligned_cols=78 Identities=28% Similarity=0.484 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCC----------CccccCCcchhhhhhhhHHHHHHHhhhhhhh---hccchhHH
Q 041226 127 RSDTALVHNLEQKLEAVLNIYEQRLSKS----------NYLAGDSFTLADLSHLPALRYLMNEAGMAHL---VTQRKHVN 193 (213)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~le~~L~~~----------~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~---~~~~p~l~ 193 (213)
+.+.+..+....++.+.|+.||++|.++ +|++|+++|+||+++++.+.++. ..+++.. ...+|+|.
T Consensus 21 ~~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~-~~~~~~~~~~~~~~P~l~ 99 (111)
T cd03204 21 HDNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLK-FLGLSRRYWGNGKRPNLE 99 (111)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHH-HcCccccccccccChHHH
Confidence 6778888999999999999999999765 49999999999999999999988 5555321 35799999
Q ss_pred HHHHHHhcChhH
Q 041226 194 AWWDKISSRPAW 205 (213)
Q Consensus 194 ~~~~~~~~~p~~ 205 (213)
+|++++.+||+|
T Consensus 100 ~w~~rv~aRpsf 111 (111)
T cd03204 100 AYFERVLQRESF 111 (111)
T ss_pred HHHHHHHcCCCC
Confidence 999999999985
No 90
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.49 E-value=1.3e-13 Score=83.84 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=49.6
Q ss_pred CCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHh
Q 041226 10 KAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAK 77 (213)
Q Consensus 10 ~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~ 77 (213)
.+++|.+++++|++.|+||+.+.+.. .. ..+|.|+||+|++||.+|+||.+|+.||+++
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~-------~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRAN-------AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCC-------cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 46789999999999999999984321 11 1678899999999999999999999999864
No 91
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.47 E-value=3.7e-13 Score=81.80 Aligned_cols=67 Identities=31% Similarity=0.499 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhh-hhhccchhHHHHHHH
Q 041226 131 ALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMA-HLVTQRKHVNAWWDK 198 (213)
Q Consensus 131 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~-~~~~~~p~l~~~~~~ 198 (213)
+..+...+++.+.|+.||++|++++|++|++||+||+++++.+.++. ..+.. .+.+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~-~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLR-FVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHH-HCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHH-HhCcCcCccccCHHHHHHHhC
Confidence 45778899999999999999999999999999999999999999999 55542 356789999999986
No 92
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=6.2e-13 Score=88.95 Aligned_cols=75 Identities=21% Similarity=0.334 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHH
Q 041226 130 TALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLA 209 (213)
Q Consensus 130 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 209 (213)
++.......++.+.++.+.+.+++++|++|+ +|+||+++++++.++. ..+. + ..|+|.+|++++.++|++++++
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~-~~~~-~---~~P~l~~~~~rv~~rPsv~~~~ 112 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFR-TYGL-P---LSPAAQAYVDALLAHPAMQEWI 112 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHH-HcCC-C---CCHHHHHHHHHHHCCHHHHHHH
Confidence 3444444455555555544445567899999 9999999999999887 4444 2 2399999999999999999987
Q ss_pred h
Q 041226 210 S 210 (213)
Q Consensus 210 ~ 210 (213)
+
T Consensus 113 ~ 113 (114)
T cd03194 113 A 113 (114)
T ss_pred h
Confidence 6
No 93
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.45 E-value=2.4e-13 Score=91.82 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhccC-CCccccCCcchhhhhhhhHHHHHHHhh-hh-h--hhhccchhHHHHHHHHhcChhHHHH
Q 041226 134 HNLEQKLEAVLNIYEQRLSK-SNYLAGDSFTLADLSHLPALRYLMNEA-GM-A--HLVTQRKHVNAWWDKISSRPAWKKL 208 (213)
Q Consensus 134 ~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~-~--~~~~~~p~l~~~~~~~~~~p~~~~~ 208 (213)
+...+.+.+.|..||+.|++ ++|++|+++|+||+++++.+.++. .. +. . ...+.+|+|.+|++++.+||+|+++
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~-~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t 107 (121)
T cd03201 29 DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLE-IALGHYKNWSVPESLTSVKSYMKALFSRESFVKT 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHH-HHHHHhcCCCCcccchHHHHHHHHHHCCchhhhc
Confidence 44567789999999999985 799999999999999999887776 32 11 0 1237899999999999999999998
Q ss_pred Hhh
Q 041226 209 ASL 211 (213)
Q Consensus 209 ~~~ 211 (213)
++.
T Consensus 108 ~~~ 110 (121)
T cd03201 108 KAE 110 (121)
T ss_pred CCC
Confidence 753
No 94
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.36 E-value=2.5e-12 Score=83.74 Aligned_cols=98 Identities=31% Similarity=0.466 Sum_probs=73.9
Q ss_pred HHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHH
Q 041226 97 DQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYL 176 (213)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~ 176 (213)
+.|+.|..+.+.............. ....++..+...+++.+.++.||++|++++|++|+++|+||+++++.+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~ 77 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVG----PEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARL 77 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccC----CCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHH
Confidence 4566777776665554443322111 134567778889999999999999999999999999999999999999998
Q ss_pred HHhhhhhh-hhccchhHHHHHHHH
Q 041226 177 MNEAGMAH-LVTQRKHVNAWWDKI 199 (213)
Q Consensus 177 ~~~~~~~~-~~~~~p~l~~~~~~~ 199 (213)
. ...... ..+.+|+|.+|++++
T Consensus 78 ~-~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 78 D-LLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred H-HhhhhhhhhccCccHHHHHHhC
Confidence 8 554421 357799999999875
No 95
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.35 E-value=7.7e-12 Score=82.29 Aligned_cols=100 Identities=24% Similarity=0.329 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccC--CCccccCCcchhhhhh
Q 041226 92 EKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSK--SNYLAGDSFTLADLSH 169 (213)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~l 169 (213)
++++++++++...+.......... . + .+....+.......+.+.+.++.||++|.+ ++|++|+++|+||+++
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l 75 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFY-E----K-DGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVV 75 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-c----C-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHH
Confidence 467888888775544333333222 1 0 011124666777888999999999999987 8999999999999999
Q ss_pred hhHHHHHHHhhhhhhh-hccchhHHHHHHHH
Q 041226 170 LPALRYLMNEAGMAHL-VTQRKHVNAWWDKI 199 (213)
Q Consensus 170 ~~~l~~~~~~~~~~~~-~~~~p~l~~~~~~~ 199 (213)
++.+.++. ..+. .. ...+|+|.+|++++
T Consensus 76 ~~~~~~~~-~~~~-~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 76 FDVLDYLL-YLDP-KLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHH-hhCc-hhhHHhChhHHHHHHhC
Confidence 99999987 4543 33 67899999999875
No 96
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.28 E-value=1.5e-11 Score=76.67 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=62.7
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
+.++||+.+.||+|.+++.+|+..|++|+.+.++-. ....++...++..++|++..||..+.++..|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 358999999999999999999999999999888643 123566677888999999999999999999999984
No 97
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.28 E-value=1.5e-11 Score=83.57 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhh-hhhhhhccchhHHHHHHHHhcC
Q 041226 133 VHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEA-GMAHLVTQRKHVNAWWDKISSR 202 (213)
Q Consensus 133 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~p~l~~~~~~~~~~ 202 (213)
.+...+.+.+.|+.+|++|++++|+.|+++|+||+++++.+.+.. .. +. +..+.+|+|.+|++||.++
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~-~~~~~-~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWAR-IVSPF-PLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHH-HcCcc-cccccCChHHHHHHHHhcC
Confidence 356778899999999999999999999999999999999999988 44 44 3457899999999999763
No 98
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.26 E-value=2.9e-11 Score=77.04 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhh-----hhhccchhHHHHHHHHh
Q 041226 133 VHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMA-----HLVTQRKHVNAWWDKIS 200 (213)
Q Consensus 133 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~-----~~~~~~p~l~~~~~~~~ 200 (213)
.....+++.+.++.+|+.|++++|++|+++|+||+++++.+.++. ..+.. ...+.+|+|.+|++++.
T Consensus 17 ~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~-~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 17 TREIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASIL-YAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHH-hcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 346678899999999999999999999999999999999998877 33221 23567999999999874
No 99
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.7e-09 Score=80.73 Aligned_cols=179 Identities=16% Similarity=0.178 Sum_probs=125.0
Q ss_pred CCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee-eCCeeeeehHHHHHHHHHhcCCCCCCccCC
Q 041226 10 KAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE-DGDFKLFESRAIIRYYAAKYVNQGPNLLGN 88 (213)
Q Consensus 10 ~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~-~~~~~l~es~aI~~yL~~~~~~~~~~l~p~ 88 (213)
.++-|.++.+++++.+-|.+.+..+-. + ..|.|++|+|+ ++|..+++-.-|..||...-.+ -.+-+.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~-------~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~k--y~~d~d 83 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNP-------W---RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKK--YNLDAD 83 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCC-------C---CCCCCCCCeEEecCCceeccHHHHHHHHHHhccc--CCcCcc
Confidence 578899999999999977766665421 1 68999999998 5679999999999999995221 122222
Q ss_pred C-hHHHHHHHHHHHHHHcccchhHHHHHHHH----------HhcccC---------C-------------CCCCHHHHHH
Q 041226 89 T-LEEKALVDQWLEVEAHNLNDLAFNLVLQL----------VILPRM---------G-------------QRSDTALVHN 135 (213)
Q Consensus 89 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~---------~-------------~~~~~~~~~~ 135 (213)
. ..+.+.+..|+++....+.++...-++.. ++.... + .....+..+.
T Consensus 84 l~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~ 163 (313)
T KOG3028|consen 84 LSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQ 163 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHH
Confidence 2 45677888888888887766544333211 000000 0 0122233445
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhhh-----hhccchhHHHHHHHHhc
Q 041226 136 LEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAH-----LVTQRKHVNAWWDKISS 201 (213)
Q Consensus 136 ~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~-----~~~~~p~l~~~~~~~~~ 201 (213)
....-.+++..|.+.|+++.|++|++||--|+.++..+..+- ...++. ....++||.+|++++..
T Consensus 164 i~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~-~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 164 IYKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILL-QVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHH-hccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 556677889999999999999999999999999999988844 344431 12349999999999865
No 100
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.23 E-value=2.9e-11 Score=78.86 Aligned_cols=66 Identities=26% Similarity=0.398 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC--ccccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhc
Q 041226 132 LVHNLEQKLEAVLNIYEQRLSKSN--YLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISS 201 (213)
Q Consensus 132 ~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 201 (213)
..+...+.+.+.++.+++.|++++ |++|++||+||+++++.+..+. ....+ +.+|+|.+|++||++
T Consensus 32 ~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~-~~~~~---~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 32 SGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLR-WADFP---KDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHH-CCHHT---TTCHHHHHHHHHHHT
T ss_pred hHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHh-hcccc---cccHHHHHHHHhhcC
Confidence 456677889999999999999877 9999999999999999997766 22121 589999999999974
No 101
>PRK10638 glutaredoxin 3; Provisional
Probab=99.21 E-value=5.6e-11 Score=74.85 Aligned_cols=74 Identities=27% Similarity=0.291 Sum_probs=63.7
Q ss_pred Ce-eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHH
Q 041226 1 MV-VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 1 M~-~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
|+ +++|+.+.||||++++.+|+++|++|+.+.++... ...+++.+.+|..++|++..||..|.+...+..+-.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 64 89999999999999999999999999999887532 2346788899999999999999999999888776543
No 102
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.19 E-value=2.2e-10 Score=70.05 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=51.5
Q ss_pred CCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHh
Q 041226 9 VKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAK 77 (213)
Q Consensus 9 ~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~ 77 (213)
+.||+|.++.++|+..|+||+.+...- -..+|.|++|+|+++|..+.||..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n----------~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN----------PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC----------CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 467999999999999999998875431 12679999999999999999999999999875
No 103
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.18 E-value=1.6e-10 Score=75.13 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=69.9
Q ss_pred HHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHH
Q 041226 98 QWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLM 177 (213)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~ 177 (213)
+|..+.++.+...+....... +.+ +....++..+....++.+.|+.+|++|++++| +++|+||+++++.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~ 76 (98)
T cd03205 3 RLEALADGILDAAVAIVYERR-LRP--EEKRSQPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLD 76 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hCc--HhhhChHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHH
Confidence 455556655555544333212 222 33567788899999999999999999998888 899999999999999887
Q ss_pred Hhhhhh-hhhccchhHHHHHHHH
Q 041226 178 NEAGMA-HLVTQRKHVNAWWDKI 199 (213)
Q Consensus 178 ~~~~~~-~~~~~~p~l~~~~~~~ 199 (213)
..... .+.+++|+|.+|+++|
T Consensus 77 -~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 77 -FRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred -hHccCcchhhhChHHHHHHHhC
Confidence 33221 3357899999999985
No 104
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=99.13 E-value=1.3e-09 Score=70.55 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccC-CCccccCCcchhhh
Q 041226 89 TLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSK-SNYLAGDSFTLADL 167 (213)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~ 167 (213)
|..+|++.+++..|+.+.|.+.-....-...+.. ......-+.....+.+.+...+.+|.. ++||.|+ .|+||.
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~----~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~ 75 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRG----ARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADA 75 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS------------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcC----CCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHH
Confidence 3568999999999999999887655444433332 222334455666777788888888877 5899987 999999
Q ss_pred hhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHHHHHhhc
Q 041226 168 SHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWKKLASLA 212 (213)
Q Consensus 168 ~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 212 (213)
.+++++.++. ..|. +-.+.+..|.++.-++|+++++++.+
T Consensus 76 dlA~ml~Rl~-~~gd----~vP~~l~~Ya~~qwqrpsVQ~Wla~~ 115 (117)
T PF14834_consen 76 DLALMLNRLV-TYGD----PVPERLADYAERQWQRPSVQRWLALS 115 (117)
T ss_dssp HHHHHHHHHH-TTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCC----CCCHHHHHHHHHHHCCHHHHHHHHHh
Confidence 9999999988 4444 22568999999999999999998754
No 105
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.12 E-value=2e-10 Score=78.09 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhh-----hhhhhhccchhHHHHHHHHh
Q 041226 132 LVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEA-----GMAHLVTQRKHVNAWWDKIS 200 (213)
Q Consensus 132 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-----~~~~~~~~~p~l~~~~~~~~ 200 (213)
..++......+.|+.|++.|++++|++|++||.+|+++++.+.++. .. ........+|||.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~-~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTIL-TTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHH-hcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 3466778889999999999999999999999999999999988876 33 23233567999999999973
No 106
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.09 E-value=7.5e-10 Score=67.70 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=61.0
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
++++|+.+.||+|.+++-+|+..|++|+.+.++... ....+........+|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 478999999999999999999999999999887532 22455566788899999999999999999999984
No 107
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=99.03 E-value=1e-09 Score=75.59 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhh-----hhhccchhHHHHHHHHhc
Q 041226 130 TALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMA-----HLVTQRKHVNAWWDKISS 201 (213)
Q Consensus 130 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~-----~~~~~~p~l~~~~~~~~~ 201 (213)
....+....+..+.++.|++.|++++|++|++||.+|+.+++.+..+. ....+ .....+|+|.+|++|+.+
T Consensus 59 ~~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~-~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 59 TEVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLL-KAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHH-hccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 345667778889999999999999999999999999999999987766 33332 235679999999999975
No 108
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.98 E-value=2.4e-09 Score=66.84 Aligned_cols=62 Identities=26% Similarity=0.403 Sum_probs=49.5
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeee
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLF 65 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~ 65 (213)
|.++||+.+.||+|.+++-+|+.+||+|+.+.++-.. ...+....++...+|+++.++..+.
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~---~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP---EAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHcCCCCcCEEEECCEEEe
Confidence 7899999999999999999999999999999987431 1122234468899999998776544
No 109
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.98 E-value=2.4e-09 Score=65.63 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=58.5
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIR 72 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~ 72 (213)
++||+.+.||+|++++.+|+.+||+|+.+.+... ....+++.+.++.+++|++..||..|.+-....+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 6899999999999999999999999999988643 2245678889999999999999999988776654
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.94 E-value=4e-09 Score=64.51 Aligned_cols=71 Identities=28% Similarity=0.333 Sum_probs=56.7
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeee--eehHHHHHHH
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKL--FESRAIIRYY 74 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l--~es~aI~~yL 74 (213)
+++||+.++||+|++++.+|+..|++|..+.++.. ....+++.+.++...+|+++.+|..+ ++...|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 47899999999999999999999999998877642 22235577789999999999888777 5666666554
No 111
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.93 E-value=4.9e-09 Score=63.71 Aligned_cols=70 Identities=20% Similarity=0.132 Sum_probs=60.1
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHH
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRY 73 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~y 73 (213)
++++|+.+.||+|++++.+|+.+|++|+.+.+... ....+++.+.++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~--~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED--GELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 47899999999999999999999999998887643 22346777889999999999999999999888764
No 112
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7.5e-09 Score=64.39 Aligned_cols=74 Identities=24% Similarity=0.190 Sum_probs=58.6
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHH
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYY 74 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL 74 (213)
|++++|+.+.||||.++.-+|+.+|++|+.+.++....+...+.....++..+||++..|+..+.....+-++.
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHH
Confidence 57899999999999999999999999999999987543223344445569999999999988777655554443
No 113
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.87 E-value=6.9e-09 Score=71.42 Aligned_cols=63 Identities=19% Similarity=0.388 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhc-cCCCccccCCcchhhhhhhhHHHHHHHhh-hhhhhhccchhHHHHHHHHhc
Q 041226 137 EQKLEAVLNIYEQRL-SKSNYLAGDSFTLADLSHLPALRYLMNEA-GMAHLVTQRKHVNAWWDKISS 201 (213)
Q Consensus 137 ~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~p~l~~~~~~~~~ 201 (213)
++.+...++.+-+.+ ++++|+.|++||+||+++++++..+. .. ++ ..+..+|++.+|++||++
T Consensus 81 r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e-~~~~~-~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 81 REWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVE-GHPAF-KDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHH-Hhccc-cchhhCcCHHHHHHHHHH
Confidence 445555555444444 45689999999999999999999988 55 44 246689999999999976
No 114
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.87 E-value=6.7e-09 Score=63.35 Aligned_cols=63 Identities=30% Similarity=0.327 Sum_probs=53.4
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeeh
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFES 67 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es 67 (213)
+++|+.++||+|.+++.+|.++|++|+.+.++.. ....+++.+.||.+++|+++++|..+.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 6899999999999999999999999999888653 23446788889999999999888777653
No 115
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.81 E-value=3.8e-08 Score=62.17 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=63.3
Q ss_pred CeeEEecCCCCccHHHHHHHHHH-----hCCceEEEEcCCCCCCCCChhhhhhCC--CCCCCeeeeCCeeeeehHHHHHH
Q 041226 1 MVVKVYGSVKAACPQRVLACLLE-----KGVEFEIVQVDLDEGEHKRPEFLLRQP--FGQVPVIEDGDFKLFESRAIIRY 73 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~P--~~~vP~L~~~~~~l~es~aI~~y 73 (213)
|.+++|+.++||+|.+++-+|+. .|++|+.+.++... ...+++..... ...+|++..||..+.+...|.++
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 78999999999999999999999 89999999987431 11234444433 36899999999999999999999
Q ss_pred HHHhcC
Q 041226 74 YAAKYV 79 (213)
Q Consensus 74 L~~~~~ 79 (213)
+.+.++
T Consensus 79 ~~~~~~ 84 (85)
T PRK11200 79 VKENLG 84 (85)
T ss_pred HHHhcc
Confidence 998875
No 116
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.78 E-value=3.1e-08 Score=60.95 Aligned_cols=71 Identities=28% Similarity=0.300 Sum_probs=57.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCC-CCCeeeeCCeeeeehHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFG-QVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~-~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
++||+.+.||+|.+++-+|+.+||+|+.+.++.. ....+++....... .+|++..+|..+.+...+.++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD--PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 6899999999999999999999999999988753 11223444445544 89999999999999998887653
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.70 E-value=6e-08 Score=60.31 Aligned_cols=72 Identities=28% Similarity=0.279 Sum_probs=60.5
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ...+++........+|++..+|..+.+...+..+..+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 47999999999999999999999999999987531 1235566667788999999999999999888877665
No 118
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.65 E-value=5.5e-08 Score=60.05 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=51.5
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhC-CCCCCCeee-eCCeeeeehH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQ-PFGQVPVIE-DGDFKLFESR 68 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~-P~~~vP~L~-~~~~~l~es~ 68 (213)
++||+.++||+|++++.+|+..|++|+.+.++-. ......+...| +...+|+++ ++|..+.+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~--~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED--EGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC--HhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 6899999999999999999999999998776532 33345666776 999999996 6777777653
No 119
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.57 E-value=2.7e-07 Score=57.70 Aligned_cols=75 Identities=17% Similarity=0.115 Sum_probs=62.0
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCC-CCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHH
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEG-EHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~-~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
++++|+.++||+|.+++-+|...+++|+...++.... ......+.+.+....+|++..+|..+.+...|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 3689999999999999999999999999999886532 11123455667788999999999999999999988765
No 120
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.57 E-value=4e-07 Score=57.56 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=58.7
Q ss_pred eEEecCCCCccHHHHHHHHHHhC-----CceEEEEcCCCCCCCCChhhhhhCCC--CCCCeeeeCCeeeeehHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKG-----VEFEIVQVDLDEGEHKRPEFLLRQPF--GQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~P~--~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
+++|+.++||+|.+++-+|+.++ ++|+.+.++.. + ....++...... ..||++..||..+.++..|.+++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~-~-~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE-G-ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC-H-HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 57999999999999999999985 56777777632 1 112344444433 689999999999999999999999
Q ss_pred HhcC
Q 041226 76 AKYV 79 (213)
Q Consensus 76 ~~~~ 79 (213)
++++
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8765
No 121
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.55 E-value=2.5e-07 Score=56.42 Aligned_cols=57 Identities=26% Similarity=0.305 Sum_probs=44.6
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCe
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDF 62 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~ 62 (213)
+++|+.+.||+|++++-+|+.+||+|+.+.++-.. ...+++ ...+...+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~--~~~~~~-~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP--EAIDYV-KAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH--HHHHHH-HHcCCcccCEEEECCC
Confidence 58999999999999999999999999999887431 112333 3357789999987553
No 122
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.54 E-value=3.6e-07 Score=59.29 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=58.9
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCC-CCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHH
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGE-HKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYY 74 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL 74 (213)
++++|+.+.||||.++.-+|...|++|+.+.++..... ...+.+...+....+|.+..+|..|.+...+....
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 58899999999999999999999999999999853211 11134556678889999999999999988877743
No 123
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.53 E-value=1.4e-07 Score=55.30 Aligned_cols=60 Identities=28% Similarity=0.275 Sum_probs=50.1
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l 64 (213)
+++|+.+.||+|.+++-+|+..|++|+.+.++... ...+++.+.+....+|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 47999999999999999999999999999998642 2335666667888999999888754
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.44 E-value=9.7e-07 Score=58.12 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=58.0
Q ss_pred eEEecCCCCccHHHHHHHHHHhCC---ceEEEEcCCC-CCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGV---EFEIVQVDLD-EGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIR 72 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi---~~~~~~v~~~-~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~ 72 (213)
+++|+.++||||.+++-+|+..|+ +|+.+.++-. .+.....++.+.+...+||.+..+|..|.+...+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 789999999999999999999999 7888888742 111224567788888899999999999998877776
No 125
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.39 E-value=3.3e-06 Score=51.18 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=48.7
Q ss_pred CCccHHHHHHHHHHhCCc---eEEEEcCCCCCCCCChhhhhhCCCCCCCeeee-CCeeeeehHHHHHHH
Q 041226 10 KAACPQRVLACLLEKGVE---FEIVQVDLDEGEHKRPEFLLRQPFGQVPVIED-GDFKLFESRAIIRYY 74 (213)
Q Consensus 10 ~s~~~~~~~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~-~~~~l~es~aI~~yL 74 (213)
.+|.|.++..+|+..+.| |+.+..+-. .++|.|++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~----------~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP----------WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC----------CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 789999999999999999 777776521 1799999999998 999999999999998
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.33 E-value=2.4e-06 Score=53.58 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=59.2
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc--eEEEEcCCCCCC-CCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE--FEIVQVDLDEGE-HKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~--~~~~~v~~~~~~-~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
+++|+.++||+|.+++-+|+..+++ |+...++..... ...+.+.+......+|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 888888764211 1112355667778899999999999999988887765
No 127
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.24 E-value=5.9e-06 Score=53.39 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=55.7
Q ss_pred eEEecC-----CCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 3 VKVYGS-----VKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~-----~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
+.+|.. +.||||.+++-+|..+|++|+.+.+.-. .....++.+.+....+|.+..+|..|.+...+.+...
T Consensus 14 Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~--~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 14 VVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED--PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQ 89 (97)
T ss_pred EEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHH
Confidence 556754 7899999999999999999998887532 2223455566778899999999999998888877543
No 128
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.20 E-value=8.9e-06 Score=51.81 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=57.5
Q ss_pred eeEEecC-----CCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 2 VVKVYGS-----VKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 2 ~~~Ly~~-----~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
++.+|.. +.||||.+++-+|+..|++|+.+.+... .....++.+.+...++|.+..+|..|.+...+.+...
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHE 85 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHH
Confidence 3567754 6899999999999999999999998643 2233556667778899999999999999988887543
No 129
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=2.2e-05 Score=64.05 Aligned_cols=160 Identities=21% Similarity=0.263 Sum_probs=99.8
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcCC
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYVN 80 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~~ 80 (213)
|+++|-...-+| ....-.++...+.+......- ... .++....++..+.++..+..|.+.....
T Consensus 1 ~~~~l~~n~~~p-pia~~~~~~a~~~~~~~~~s~-------s~k--------~~~~~~~d~~~l~~a~~~~~~~~~~~~~ 64 (712)
T KOG1147|consen 1 MGMKLSANLEAP-PIAYIAALAASAVNVDGKSSF-------SEK--------LVDKQFLDGRKLNGATEPVVYSAALAKA 64 (712)
T ss_pred CCceeecCCCCC-chHHHHHHHhhcCCccCcchh-------hhh--------hhhhhccccccccCCccchhhhhhhccc
Confidence 566666666555 444444555555443322211 111 1222223466677777777777744332
Q ss_pred CCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 041226 81 QGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGD 160 (213)
Q Consensus 81 ~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 160 (213)
.+.+++.+ .++++++.|+++... .....+...+..++..|.-+.||+|.
T Consensus 65 -~~~lf~~~-~d~~~vd~w~~~s~~-----------------------------~~~~~~s~~~~~ld~~l~~~t~lvg~ 113 (712)
T KOG1147|consen 65 -DPKLFGNN-IDRSQVDHWVSFSST-----------------------------FSFDEISSSLSELDKFLVLRTFLVGN 113 (712)
T ss_pred -CHhHcCCc-ccHHHHHHHHHHhhh-----------------------------cchHHHHHHHHHHHhhhhHHHHhhcc
Confidence 24688877 789999999987764 11235677778888888888999999
Q ss_pred CcchhhhhhhhHHHHHHHhhhhhh--hhccchhHHHHHHHHhcChhHHHHH
Q 041226 161 SFTLADLSHLPALRYLMNEAGMAH--LVTQRKHVNAWWDKISSRPAWKKLA 209 (213)
Q Consensus 161 ~~t~aD~~l~~~l~~~~~~~~~~~--~~~~~p~l~~~~~~~~~~p~~~~~~ 209 (213)
++|+||+++++.++.-. +.... ....+-++.||++-....++.+.++
T Consensus 114 sls~Ad~aiw~~l~~n~--~~~~~lk~~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 114 SLSIADFAIWGALHSNG--MRQEQLKAKKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred chhHHHHHHHHHHhccc--chHHHHHhhCCchhhhhhcCcHhHHHHHHHHH
Confidence 99999999999888743 22211 1235889999998444444444433
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.82 E-value=9.4e-05 Score=51.34 Aligned_cols=71 Identities=20% Similarity=0.103 Sum_probs=56.5
Q ss_pred eEEecCC------CCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCC----CCCCCeeeeCCeeeeehHHHHH
Q 041226 3 VKVYGSV------KAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQP----FGQVPVIEDGDFKLFESRAIIR 72 (213)
Q Consensus 3 ~~Ly~~~------~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P----~~~vP~L~~~~~~l~es~aI~~ 72 (213)
++||..+ ++|+|.+++.+|+.+||+|+.+.+++.. ...+++.+... ...+|.+..+|..|.+...+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 5789998 8999999999999999999999987642 12345555543 3789999999999999888877
Q ss_pred HHH
Q 041226 73 YYA 75 (213)
Q Consensus 73 yL~ 75 (213)
.-+
T Consensus 80 L~e 82 (147)
T cd03031 80 LNE 82 (147)
T ss_pred HHH
Confidence 443
No 131
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.78 E-value=8.5e-05 Score=60.59 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=54.5
Q ss_pred Ce-eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhh---------hhhCCCCCCCeeeeCCeeeeehHHH
Q 041226 1 MV-VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEF---------LLRQPFGQVPVIEDGDFKLFESRAI 70 (213)
Q Consensus 1 M~-~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~---------~~~~P~~~vP~L~~~~~~l~es~aI 70 (213)
|+ +++|+.+.||+|.++.-+|...||+|+.+.++-. . ...++ ........||++..||..|.+-..+
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~--~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD--V-KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC--h-hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 54 8999999999999999999999999999998732 1 11122 1224677899999999999888777
Q ss_pred HH
Q 041226 71 IR 72 (213)
Q Consensus 71 ~~ 72 (213)
..
T Consensus 78 ~~ 79 (410)
T PRK12759 78 MA 79 (410)
T ss_pred HH
Confidence 66
No 132
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.60 E-value=0.00027 Score=47.97 Aligned_cols=67 Identities=25% Similarity=0.326 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhH
Q 041226 134 HNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAW 205 (213)
Q Consensus 134 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 205 (213)
....++++..|..||.++......-| ++|+.|+.+++.|+.+. .+.- +.--|++.+|+++|.+...+
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Lt-ivkg---i~~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLT-IVKG---IQWPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHC-TCTT---S---HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhh-hccC---CcCCHHHHHHHHHHHHHcCC
Confidence 35667888889999988886544444 89999999999999988 3322 23467999999999876554
No 133
>PRK10824 glutaredoxin-4; Provisional
Probab=97.53 E-value=0.00043 Score=45.91 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=56.1
Q ss_pred eEEecC-----CCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 3 VKVYGS-----VKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~-----~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
+.+|.- +.||||.++.-+|...|++|+...++-. ..-...+.+.+-..++|.+..+|..|.+...+.....
T Consensus 17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 17 ILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence 445654 4899999999999999999998877642 1233566677888899999999999999988877543
No 134
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.48 E-value=0.00078 Score=40.08 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=41.9
Q ss_pred eeEEecCCCCccHHHHHHHHHHh-----CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeee
Q 041226 2 VVKVYGSVKAACPQRVLACLLEK-----GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLF 65 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~ 65 (213)
.+++|+.++||+|.++.-+|++. +++|....++ ..++.........+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~------~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA------EFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc------cCHhHHHHcCCcccCEEEECCEEEE
Confidence 36899999999999999999876 4666555544 2244555555567999987776554
No 135
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.001 Score=43.23 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=59.6
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCC-CCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEG-EHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~-~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
..+|+-+.||||.++.-+|...|+++..+.+|-... ..-...+.+..-..++|.+..+|..|.+...+..+-..
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~~ 90 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHKS 90 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHHc
Confidence 668889999999999999999999999999986532 22334445556677999999999999999888877544
No 136
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.29 E-value=0.001 Score=44.86 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChh
Q 041226 135 NLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPA 204 (213)
Q Consensus 135 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 204 (213)
...++++..|..++..+..... +++.+|+.|+.++++|+.+. .+.- +.-.|++++|+++|.+...
T Consensus 60 ~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt-~vkg---i~~P~~V~~Y~~~~s~~t~ 124 (128)
T cd03199 60 QYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLT-LVKG---LVFPPKVKAYLERMSALTK 124 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhh-hhcC---CCCCHHHHHHHHHHHHHhC
Confidence 4567788888889988855444 46679999999999999988 3322 2336799999999987643
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=97.21 E-value=0.0015 Score=48.02 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=51.5
Q ss_pred CCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHH
Q 041226 9 VKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYY 74 (213)
Q Consensus 9 ~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL 74 (213)
+.||||+++.-+|+..||+|+...+.-. ..-...+.+.+....+|.+..+|..|.+...+.+..
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~~d--~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIFED--PDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 6899999999999999999998877632 222345666777789999999999998888777744
No 138
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.21 E-value=0.00054 Score=46.78 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=31.2
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~ 35 (213)
+++|+.+.|++|++++-+|+.+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 899999999999999999999999999999853
No 139
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.13 E-value=0.00081 Score=44.84 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=30.6
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVD 34 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 34 (213)
+++|+.+.|++|++++-+|+.+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 89999999999999999999999999999985
No 140
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.11 E-value=0.00067 Score=44.94 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=30.9
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~ 35 (213)
++||+.+.||+|++++-+|+.+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999999864
No 141
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.98 E-value=0.0011 Score=43.46 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=30.7
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~ 35 (213)
+++|+.+.||+|++++-+|+.+||+|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 579999999999999999999999999999863
No 142
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0036 Score=37.40 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=47.1
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCC--------CCCCChhhhhh--CCCCCCCeee-eCCeeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDE--------GEHKRPEFLLR--QPFGQVPVIE-DGDFKLF 65 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~--------~~~~~~~~~~~--~P~~~vP~L~-~~~~~l~ 65 (213)
.+||++..||-|....-.|+-.+++|+.+.+.-.- -.+..++|-+. |.+-.+|+|. +||.++.
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 69999999999999999999999999999986431 11233455433 5566799996 6666655
No 143
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0016 Score=43.47 Aligned_cols=34 Identities=26% Similarity=0.567 Sum_probs=32.2
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcC
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVD 34 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 34 (213)
|++++|+.+.|.-|++++-.|+..||+|+.+.+.
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 7899999999999999999999999999988775
No 144
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.86 E-value=0.0019 Score=44.12 Aligned_cols=33 Identities=9% Similarity=0.189 Sum_probs=31.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~ 35 (213)
+++|+.+.|+.|++++-+|+..||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 899999999999999999999999999999863
No 145
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.81 E-value=0.0071 Score=38.51 Aligned_cols=68 Identities=28% Similarity=0.281 Sum_probs=51.1
Q ss_pred eEEecCCCCc------cHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhC----CCCCCCeeeeCCeeeeehHHHHH
Q 041226 3 VKVYGSVKAA------CPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQ----PFGQVPVIEDGDFKLFESRAIIR 72 (213)
Q Consensus 3 ~~Ly~~~~s~------~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~----P~~~vP~L~~~~~~l~es~aI~~ 72 (213)
+++|..+.+. .|+.++.+|+-+||+|+.+.++... ....+..+.. +...+|-+..++..|.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 6788877664 4667889999999999999998742 2334555443 34789999999999988866655
No 146
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.81 E-value=0.0022 Score=43.81 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=31.1
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~ 35 (213)
+++|+.+.|+.|+++.-+|+.+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 889999999999999999999999999998863
No 147
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=96.74 E-value=0.0053 Score=39.56 Aligned_cols=71 Identities=31% Similarity=0.273 Sum_probs=43.9
Q ss_pred CeeEEecCCCCcc------HHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhC---------CCCCCCeeeeCCeeee
Q 041226 1 MVVKVYGSVKAAC------PQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQ---------PFGQVPVIEDGDFKLF 65 (213)
Q Consensus 1 M~~~Ly~~~~s~~------~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~---------P~~~vP~L~~~~~~l~ 65 (213)
|++++|.+..+.. .+++..+|+.++|+|+.+.+... +....+.++.. +..-+|-+..|+..+.
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~--e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD--EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC--HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 8899999887764 46899999999999999998873 22233444333 3344577888888777
Q ss_pred ehHHHHHH
Q 041226 66 ESRAIIRY 73 (213)
Q Consensus 66 es~aI~~y 73 (213)
+-..+.+-
T Consensus 79 dye~f~ea 86 (99)
T PF04908_consen 79 DYEDFEEA 86 (99)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 76655443
No 148
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.62 E-value=0.0032 Score=42.12 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=30.1
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVD 34 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 34 (213)
+++|+.+.||+|++++-+|+..|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999998885
No 149
>PRK10026 arsenate reductase; Provisional
Probab=96.43 E-value=0.005 Score=42.42 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=31.6
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCC
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDL 35 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~ 35 (213)
+++++|+.+.|.-|++++-+|+.+|++|+.+.+--
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~ 36 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLE 36 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeC
Confidence 14999999999999999999999999999998753
No 150
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.42 E-value=0.041 Score=33.59 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=41.6
Q ss_pred CeeEEecCCCCccHHHH----HHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeee
Q 041226 1 MVVKVYGSVKAACPQRV----LACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLF 65 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~----~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~ 65 (213)
|.+.+|. ++||.|..+ .-++++.|++++.+.++- .++. ...-...+|++..||..++
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a-~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEI-LEAGVTATPGVAVDGELVI 61 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHH-HHcCCCcCCEEEECCEEEE
Confidence 6678877 889999998 668888999999888872 1222 2344567999987775553
No 151
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.41 E-value=0.0051 Score=40.25 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=30.7
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~ 35 (213)
+++|+.+.|+.|++++-+|++.|++|+.+.+.-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 589999999999999999999999999998863
No 152
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.29 E-value=0.0064 Score=40.34 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=30.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVD 34 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 34 (213)
++||+.+.|+.|++++-+|+++|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 68999999999999999999999999999875
No 153
>PRK10853 putative reductase; Provisional
Probab=96.17 E-value=0.0089 Score=39.99 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=30.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVD 34 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 34 (213)
+++|+.+.|.-|++++-+|++.|++|+.+.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999988875
No 154
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.82 E-value=0.057 Score=34.12 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=40.7
Q ss_pred eEEecCCCCccHHHHHHHHHHh-----CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEK-----GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLF 65 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~ 65 (213)
+++|..++|++|..+.-+++.. ++.+..+.++ ..++.........+|.++.||..+.
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~------~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA------LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH------hCHHHHHHcCCccCCEEEECCEEEE
Confidence 7899999999999988877766 4555555554 2345555666667999987766544
No 155
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.76 E-value=0.077 Score=32.84 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=39.4
Q ss_pred eeEEecCCCCccHHHHHHHHHHhC--CceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCC
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKG--VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGD 61 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~g--i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~ 61 (213)
+++||+.+.|+.|..+.-.|+... .+++...+|... .+..+.+.. -.+|||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~---d~~l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE---DPELFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT---THHHHHHSC--TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC---CHHHHHHhc--CCCCEEEEcC
Confidence 378999999999999999999654 567777777752 223343444 3799998666
No 156
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.65 E-value=0.083 Score=32.36 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=39.4
Q ss_pred eeEEecCCCCccHHHHHHHHHH----hCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCe
Q 041226 2 VVKVYGSVKAACPQRVLACLLE----KGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDF 62 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~ 62 (213)
.+++|+.++||+|..+.-.|+. .+..+....++.. ..++..+......+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM----ENPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc----cCHHHHHHcCCccCCEEEECCE
Confidence 3689999999999988888764 3444566666654 2234444556667999986664
No 157
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.57 E-value=0.023 Score=38.49 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=30.9
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcC
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVD 34 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 34 (213)
.+++|+.+.|.-|++++-.|+++||+|+.+.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 478999999999999999999999999999875
No 158
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.51 E-value=0.09 Score=32.06 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=37.6
Q ss_pred CeeEEecCCCCccHHHHHH----HHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeee
Q 041226 1 MVVKVYGSVKAACPQRVLA----CLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLF 65 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~----~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~ 65 (213)
|.++++ .+.||+|..+.- ++...|+.++.+.+. ..++. ...-...+|+|+.||...+
T Consensus 1 m~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~------~~~~~-~~ygv~~vPalvIng~~~~ 61 (76)
T PF13192_consen 1 MKIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIE------DFEEI-EKYGVMSVPALVINGKVVF 61 (76)
T ss_dssp EEEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETT------THHHH-HHTT-SSSSEEEETTEEEE
T ss_pred CEEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc------CHHHH-HHcCCCCCCEEEECCEEEE
Confidence 667885 555999996655 555667777666652 22344 5566778999997776544
No 159
>PHA02125 thioredoxin-like protein
Probab=95.25 E-value=0.088 Score=31.98 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=37.8
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIED 59 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~ 59 (213)
+.+|+.++|+.|..+.-.|+. +.++...++.. ...+..+..--..+|++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~----~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTD----EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeeeCC----CCHHHHHHcCCceeCeEEC
Confidence 779999999999988877764 56666666643 2356666666778999983
No 160
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.88 E-value=0.044 Score=36.30 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=29.7
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVD 34 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 34 (213)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988864
No 161
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.11 Score=33.27 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=50.1
Q ss_pred cCCCCccHHHHHHHHHHhC-CceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHH
Q 041226 7 GSVKAACPQRVLACLLEKG-VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 7 ~~~~s~~~~~~~~~L~~~g-i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
..|.|.|+.++--+|...| ++|..+.|-.. ..-....++.+-..+.|-|-.+|..+.++.-|.+...+
T Consensus 26 ~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d--~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q~ 94 (105)
T COG0278 26 EFPQCGFSAQAVQILSACGVVDFAYVDVLQD--PEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQS 94 (105)
T ss_pred CCCCCCccHHHHHHHHHcCCcceeEEeeccC--HHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHHc
Confidence 4578999999999999999 67777776432 11223334456678899999999999999887776543
No 162
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.74 E-value=0.05 Score=36.15 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=29.7
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVD 34 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 34 (213)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988765
No 163
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.63 E-value=0.26 Score=27.63 Aligned_cols=53 Identities=30% Similarity=0.344 Sum_probs=37.0
Q ss_pred eEEecCCCCccHHHHHHHHH-----HhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLL-----EKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+.+|+...|++|.+.+..+. ..++.+....++... .........+...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccccEEE
Confidence 46788889999999999999 455666666665431 111112467888999997
No 164
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.50 E-value=0.49 Score=33.77 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhccCC---CccccCC-cchhhhhhhhHHHHHH
Q 041226 140 LEAVLNIYEQRLSKS---NYLAGDS-FTLADLSHLPALRYLM 177 (213)
Q Consensus 140 ~~~~l~~le~~L~~~---~~l~G~~-~t~aD~~l~~~l~~~~ 177 (213)
-.+++..|++.|++. .|+.|+. +|-+||.+++.+.-+.
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 456788889999888 9999977 9999999999777755
No 165
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=88.85 E-value=0.57 Score=30.79 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=23.0
Q ss_pred ecCCCCccHHHHHHHHHHhCCceEEEEcC
Q 041226 6 YGSVKAACPQRVLACLLEKGVEFEIVQVD 34 (213)
Q Consensus 6 y~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 34 (213)
|+.+.|.-|++++-+|++.|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78889999999999999999999998875
No 166
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=87.83 E-value=0.93 Score=29.73 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=41.3
Q ss_pred CCccHHHHHHHHHHh---CCceEEEEcCCCCCCCCChhhhhh--CCCCCCCeee-eCC-------------eeeeehHHH
Q 041226 10 KAACPQRVLACLLEK---GVEFEIVQVDLDEGEHKRPEFLLR--QPFGQVPVIE-DGD-------------FKLFESRAI 70 (213)
Q Consensus 10 ~s~~~~~~~~~L~~~---gi~~~~~~v~~~~~~~~~~~~~~~--~P~~~vP~L~-~~~-------------~~l~es~aI 70 (213)
.||.|..+.=+|..- .-..+.+.|++.+. + ...... -....+|+|+ .++ ..|.++..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP--R-~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP--R-QAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc--h-HHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 466666665555432 22455566665421 1 222211 2245689998 333 379999999
Q ss_pred HHHHHHhcCC
Q 041226 71 IRYYAAKYVN 80 (213)
Q Consensus 71 ~~yL~~~~~~ 80 (213)
++||+++|+-
T Consensus 100 ~~~La~r~g~ 109 (112)
T PF11287_consen 100 LRYLAERHGF 109 (112)
T ss_pred HHHHHHHcCC
Confidence 9999999984
No 167
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.24 E-value=1.5 Score=32.51 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=52.0
Q ss_pred cCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHH
Q 041226 7 GSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 7 ~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
..+.|+|++++.-+|...|++|+...|-.+ +.-....+..+-..+.|-|-.+|.-+.+..-|.+.+..
T Consensus 150 ~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D--eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~ 217 (227)
T KOG0911|consen 150 EEPKCGFSRQLVGILQSHNVNYTIFDVLTD--EELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEK 217 (227)
T ss_pred CcccccccHHHHHHHHHcCCCeeEEeccCC--HHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhc
Confidence 456899999999999999999998888643 11223344557788899999999988888777665543
No 168
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=86.28 E-value=5.1 Score=25.33 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=36.0
Q ss_pred eEEecCCCCccHHHHHHHHHH----hCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLE----KGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l 64 (213)
+.+|+.++|+.|....-.++. .+-.+....++.. ..+++....-...+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 567888999999988777755 1112444455543 334555444456789885 566554
No 169
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=84.99 E-value=0.99 Score=33.61 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHhcChhHH
Q 041226 141 EAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKISSRPAWK 206 (213)
Q Consensus 141 ~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 206 (213)
.+.++.++..|.++.|.-|.+++=+|+.++.. ++..+....+++..+|+.++.+.-.+.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~a-------l~~ep~s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAA-------LGVEPQSARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehh-------cccCcchhhhhHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999998773 333233456788888888887665554
No 170
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=84.40 E-value=7.9 Score=24.29 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=45.2
Q ss_pred eEEecCCCCccHHHHHHHHH-----HhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeee------eehHH
Q 041226 3 VKVYGSVKAACPQRVLACLL-----EKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKL------FESRA 69 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l------~es~a 69 (213)
+..++.++|+.|+...=.++ ..+ ++....++.. ..+.+.+..-...+|.+. .+|..+ .+...
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 95 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAES 95 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHH
Confidence 55678889999998774443 332 5666666654 346677777788899996 566544 24456
Q ss_pred HHHHHHH
Q 041226 70 IIRYYAA 76 (213)
Q Consensus 70 I~~yL~~ 76 (213)
|.++|.+
T Consensus 96 l~~~i~~ 102 (103)
T PF00085_consen 96 LIEFIEK 102 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6666654
No 171
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.22 E-value=4.6 Score=34.73 Aligned_cols=56 Identities=21% Similarity=0.184 Sum_probs=39.1
Q ss_pred eEEecCCCCccHHHHHH----HHHHh-CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeee
Q 041226 3 VKVYGSVKAACPQRVLA----CLLEK-GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~----~L~~~-gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l 64 (213)
+++|..+.||+|-.+.- +..+. +|..+.+.+.. .++.........||.++.||..+
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~------~~~~~~~~~v~~vP~~~i~~~~~ 540 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH------FPDLKDEYGIMSVPAIVVDDQQV 540 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc------cHHHHHhCCceecCEEEECCEEE
Confidence 68888899999986554 44444 57777766653 25666566777899998776543
No 172
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=82.87 E-value=8.2 Score=23.30 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=36.6
Q ss_pred eEEecCCCCccHHHHHHHHHH-----hCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCee
Q 041226 3 VKVYGSVKAACPQRVLACLLE-----KGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFK 63 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~ 63 (213)
+..++.++|+.|+...-.++. .++.+-.+.++- ...+........+|++. .+|..
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE------NPELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC------ChhHHHhcCcccccEEEEEECCEE
Confidence 556788899999988888877 556655555442 34455555566799985 45553
No 173
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=80.78 E-value=8.3 Score=25.33 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=34.5
Q ss_pred eEEe-cCCCCccHHHHHHHHHHhCCc---eEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVY-GSVKAACPQRVLACLLEKGVE---FEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly-~~~~s~~~~~~~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+.++ +.++||+|+.+.-+++...-. .+...++.. ..++....-....+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 3444 678999999888777755432 234444443 346676677778899996
No 174
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=80.25 E-value=4.9 Score=25.71 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=33.2
Q ss_pred eEEecCCCCccHHHHHHHH--------HHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACL--------LEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L--------~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+..|+.++|++|++..-.+ ...+ .+....++....+....++.+......+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 5578889999999876332 2232 45666666542221234555555666799885
No 175
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=80.19 E-value=2 Score=36.59 Aligned_cols=71 Identities=13% Similarity=0.010 Sum_probs=46.1
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc---eEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeee----hHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE---FEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFE----SRAIIRYYA 75 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~e----s~aI~~yL~ 75 (213)
+++|..+.||||-.+.-+++..-+. ++...++- ...+++....-...||.+..|+..+.+ ...+++.+.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~ 195 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLD 195 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHh
Confidence 7899999999999877776655542 33333332 234566666677799999877655544 234555555
Q ss_pred Hh
Q 041226 76 AK 77 (213)
Q Consensus 76 ~~ 77 (213)
+.
T Consensus 196 ~~ 197 (517)
T PRK15317 196 TG 197 (517)
T ss_pred cc
Confidence 43
No 176
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=79.89 E-value=15 Score=24.51 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=34.4
Q ss_pred eEEecCCCCccHHHHHHHHH----HhCCceEEEEcCCCCC-CCC-C---hhhhhhC----CCCCCCeee--eCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLL----EKGVEFEIVQVDLDEG-EHK-R---PEFLLRQ----PFGQVPVIE--DGDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~----~~gi~~~~~~v~~~~~-~~~-~---~~~~~~~----P~~~vP~L~--~~~~~l 64 (213)
+..|+.++||+|++..=.|+ ..++++-.+.++.... +.. . .++.+.. ....+|+++ .+|..+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 44578999999998555443 3446666666553221 111 1 1333332 344599996 566443
No 177
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.33 E-value=1.7 Score=36.98 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=40.2
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc---eEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE---FEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFE 66 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~e 66 (213)
+++|..+.||||-.+.-+++...+. ++...++- . ..++.....-...||.+..++..+.+
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~---~-~~~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG---A-LFQDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc---h-hCHHHHHhcCCcccCEEEECCcEEEe
Confidence 7899999999999887777666553 33333332 2 33555566667799999877655554
No 178
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=77.27 E-value=15 Score=27.16 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=35.4
Q ss_pred eEEecCCCCccHHHHHHHHHHhCC---ceEEEEcCCCCCCCCChhhhhhCCCCCCCeeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGV---EFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIED 59 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~ 59 (213)
+.+|+.++||+|..+.-+++..-- ..+...++.. ..++.........+|++..
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEEE
Confidence 567899999999988877775432 2333445543 3455656666667999973
No 179
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=76.19 E-value=15 Score=24.17 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=39.0
Q ss_pred eEEecCCCCccHHHHHHHHHHhCC---ceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGV---EFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKLF 65 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l~ 65 (213)
+-.|+.++|+-|+...-.++...- ......++.. ..++..+...-..+|+++ .+|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 456788999999977766654221 1345555543 345666667777899996 6777665
No 180
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=76.07 E-value=1.5 Score=29.22 Aligned_cols=28 Identities=36% Similarity=0.736 Sum_probs=13.8
Q ss_pred CCCCeee--eCCeeeeehHHHHHHHHHhcC
Q 041226 52 GQVPVIE--DGDFKLFESRAIIRYYAAKYV 79 (213)
Q Consensus 52 ~~vP~L~--~~~~~l~es~aI~~yL~~~~~ 79 (213)
..-|.|. -+|+.++|+.||++|+..-|.
T Consensus 34 ~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 34 ESGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp --S--EEE-S--S----HHHHHHHHTT--T
T ss_pred cccceeeecCCceEEecccHHHHHHHhhcC
Confidence 3458885 468999999999999999776
No 181
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=72.37 E-value=19 Score=22.36 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=36.0
Q ss_pred eEEecCCCCccHHHHHHHHHHh----CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEK----GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l 64 (213)
+..|+.++|+.|++..-.|+.. +..+....++.. ..+++.+......+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE----ELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc----cCHHHHHhcCCccccEEEEEECCEEE
Confidence 4567889999999887666542 334566666543 234444444456699885 566543
No 182
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=71.46 E-value=25 Score=22.84 Aligned_cols=57 Identities=11% Similarity=-0.059 Sum_probs=34.0
Q ss_pred eEEecCCCCccHHHHHHHH-----HHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCee
Q 041226 3 VKVYGSVKAACPQRVLACL-----LEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFK 63 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L-----~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~ 63 (213)
+..++.++|+.|+...-.+ ++.+.......++.. ..+.......-..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d----~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG----HERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc----ccHHHHHHcCCccCCEEEEEECCEE
Confidence 5568889999998665333 222323444555543 234555555667899886 55544
No 183
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=68.71 E-value=12 Score=24.34 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=41.6
Q ss_pred EecCCCCccHHHHHHHHHHhCC--ceEEEEcCCCCCCC--CChhhhhhCCCCCCCeeeeCCe-eeeehHHHHHHHHHh
Q 041226 5 VYGSVKAACPQRVLACLLEKGV--EFEIVQVDLDEGEH--KRPEFLLRQPFGQVPVIEDGDF-KLFESRAIIRYYAAK 77 (213)
Q Consensus 5 Ly~~~~s~~~~~~~~~L~~~gi--~~~~~~v~~~~~~~--~~~~~~~~~P~~~vP~L~~~~~-~l~es~aI~~yL~~~ 77 (213)
|++...||+|....-.++..+. .++.+.+....+.. ........+....+-+ ..+|. ...++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 4778889999998888888775 45555542211110 0000111122333433 55665 999999999886654
No 184
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=67.32 E-value=32 Score=22.74 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=32.3
Q ss_pred eEEecCCCCccHHHHHHHHHH------hCCceEEEEcCCCCCCCCChhhhhhCCCC-CCCeee--e-CCeeee
Q 041226 3 VKVYGSVKAACPQRVLACLLE------KGVEFEIVQVDLDEGEHKRPEFLLRQPFG-QVPVIE--D-GDFKLF 65 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~------~gi~~~~~~v~~~~~~~~~~~~~~~~P~~-~vP~L~--~-~~~~l~ 65 (213)
+.-++.++|+.|++..-.+.. .+..|..+.++.. . .+.....+..| .+|+++ + +|..+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~--~--~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD--E--EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC--C--CchhhhcccCCCccceEEEECCCCCCch
Confidence 445778999999977555544 2234544444432 1 11122345554 499985 3 455443
No 185
>PTZ00051 thioredoxin; Provisional
Probab=66.51 E-value=29 Score=21.60 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=34.6
Q ss_pred eEEecCCCCccHHHHHHHHHHhC---CceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKG---VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~g---i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l 64 (213)
+..++.++|+.|+...-.++... ..+....++.. ....+.+......+|+++ .+|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeEE
Confidence 45778899999997766555421 12344444432 234555555667899885 455443
No 186
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=65.27 E-value=5.7 Score=22.85 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=17.3
Q ss_pred CeeEEecC----CCCccHHHHHHHHHH
Q 041226 1 MVVKVYGS----VKAACPQRVLACLLE 23 (213)
Q Consensus 1 M~~~Ly~~----~~s~~~~~~~~~L~~ 23 (213)
|.++||.. ..|.||+++-.+|..
T Consensus 1 ~~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 1 MKMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred CcceeeEeecCCchHHHHHHHHHHHhC
Confidence 66778744 456799999988864
No 187
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=65.27 E-value=45 Score=24.67 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=36.6
Q ss_pred eEEecC---CCCccHHHHHHHHHHhC-----CceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCee
Q 041226 3 VKVYGS---VKAACPQRVLACLLEKG-----VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFK 63 (213)
Q Consensus 3 ~~Ly~~---~~s~~~~~~~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~ 63 (213)
+.+|+. ++||.|..+.=.+++.. +.+....++.. ..++.....--..+|++. .+|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~----~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP----EDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc----ccHHHHHHcCCCccCEEEEEeCCee
Confidence 567777 89999998877776653 33344444432 345666666677899996 45433
No 188
>PHA03075 glutaredoxin-like protein; Provisional
Probab=63.74 E-value=12 Score=24.77 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=47.3
Q ss_pred eeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhc
Q 041226 2 VVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKY 78 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~ 78 (213)
++.|++-|.|+-|+.+.-+|++..-.|+...|+.. .| ..-.|++=+|-.|+. ..=-..+.+|+...+
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl-------Sf--FsK~g~v~~lg~d~~-y~lInn~~~~lgne~ 70 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVNIL-------SF--FSKDGQVKVLGMDKG-YTLINNFFKHLGNEY 70 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEEee-------ee--eccCCceEEEecccc-eehHHHHHHhhcccE
Confidence 38999999999999999999999999999999874 12 233355656654322 222356677777544
No 189
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.13 E-value=39 Score=22.70 Aligned_cols=66 Identities=12% Similarity=0.030 Sum_probs=40.5
Q ss_pred CCCCccHHH----HHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCC-------CCeee--e-CCeeeeehHHHHHH
Q 041226 8 SVKAACPQR----VLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQ-------VPVIE--D-GDFKLFESRAIIRY 73 (213)
Q Consensus 8 ~~~s~~~~~----~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~-------vP~L~--~-~~~~l~es~aI~~y 73 (213)
-++||.|.+ ++=+|++.+.+...+.+..++ ++-|-...||+.+ ||+|. . .+..+.+...-...
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~---rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~ 118 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN---RPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDH 118 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC---CCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHH
Confidence 458998885 456677777777777776652 3344444555544 67775 3 34556666665555
Q ss_pred HHH
Q 041226 74 YAA 76 (213)
Q Consensus 74 L~~ 76 (213)
|.+
T Consensus 119 Lve 121 (128)
T KOG3425|consen 119 LVE 121 (128)
T ss_pred HHH
Confidence 555
No 190
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=59.60 E-value=16 Score=25.71 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=28.1
Q ss_pred cCCCCccHH-------HHHHHHHHhCCceEEEEcCCCCCCCCChhhhh
Q 041226 7 GSVKAACPQ-------RVLACLLEKGVEFEIVQVDLDEGEHKRPEFLL 47 (213)
Q Consensus 7 ~~~~s~~~~-------~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~ 47 (213)
+..+||-|+ +..-.+...+-|++.+.|+.+..+..-.+|..
T Consensus 41 sA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~ 88 (157)
T KOG2501|consen 41 SAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYML 88 (157)
T ss_pred EEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHH
Confidence 455777665 45566777778999999998865544455554
No 191
>PHA02278 thioredoxin-like protein
Probab=58.67 E-value=47 Score=21.42 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=34.4
Q ss_pred eEEecCCCCccHHHHHHHHHHh----CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEK----GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l 64 (213)
+.-|+.++|+.|+...=.++.. +.......++........++..+..--..+|++. .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4457889999998666444332 2222344444432111124555555566799996 566654
No 192
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=57.27 E-value=23 Score=25.34 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=27.2
Q ss_pred eeEEecCCCCccHHH----HHHHHHHh-CCceEEEEcCCC
Q 041226 2 VVKVYGSVKAACPQR----VLACLLEK-GVEFEIVQVDLD 36 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~----~~~~L~~~-gi~~~~~~v~~~ 36 (213)
++++|+...||||.. ++-+++.. ++.++.+++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 478999999999984 44555556 899999998864
No 193
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=56.14 E-value=14 Score=24.20 Aligned_cols=26 Identities=8% Similarity=0.195 Sum_probs=22.1
Q ss_pred CCee-eeCCeeeeehHHHHHHHHHhcC
Q 041226 54 VPVI-EDGDFKLFESRAIIRYYAAKYV 79 (213)
Q Consensus 54 vP~L-~~~~~~l~es~aI~~yL~~~~~ 79 (213)
.|.+ ..+|.++++|..|+++.+++|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 3555 4789999999999999999876
No 194
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.01 E-value=8.3 Score=28.91 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=16.4
Q ss_pred eeEEecCCCCccHHHHHHHHHHh
Q 041226 2 VVKVYGSVKAACPQRVLACLLEK 24 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~~~L~~~ 24 (213)
.+.+|+...||||....--|+..
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHH
Confidence 37888999999998544444433
No 195
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=55.63 E-value=69 Score=22.42 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=34.3
Q ss_pred eEEecCCCCccHHHHHHHHHHh-----CCceEEEEcCCCCCCCCChhhhhhCCC------CCCCeee--eCCeeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEK-----GVEFEIVQVDLDEGEHKRPEFLLRQPF------GQVPVIE--DGDFKLF 65 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~P~------~~vP~L~--~~~~~l~ 65 (213)
+..|+.++|+.|+...-.++.. +-.++...++..+ .++..+..-- .++|+++ .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 4567888999998766544333 2235556666542 2344332222 2489986 6776665
No 196
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=54.15 E-value=26 Score=21.97 Aligned_cols=54 Identities=7% Similarity=0.011 Sum_probs=29.6
Q ss_pred eEEecCCCCccHHHHHHHH----HHhC--CceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACL----LEKG--VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L----~~~g--i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+.+|+.++|+.|+...=.+ +..+ -.+....++... ...+.+.+...-..+|.++
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEE
Confidence 4578889999999774222 2211 223344444432 1234555554556789885
No 197
>PRK09381 trxA thioredoxin; Provisional
Probab=52.49 E-value=59 Score=20.71 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=33.9
Q ss_pred eEEecCCCCccHHHHHHHHHH----hCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLE----KGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l 64 (213)
+..++.++||.|+...-.++. .+-.+....++.. ..+...+......+|+++ .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID----QNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECC----CChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 446788899999977644432 2223455555554 223444444556799885 566544
No 198
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=51.94 E-value=41 Score=22.16 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCCCCCCccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHH
Q 041226 67 SRAIIRYYAAKYVNQGPNLLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNI 146 (213)
Q Consensus 67 s~aI~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (213)
-.+.++||.+..+ +|.........-....+...+.+...+...+.. +...+.+.+.............
T Consensus 8 Y~~LI~yLte~L~-----lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Q-------np~L~~~~R~~iirE~Daiv~D 75 (113)
T PF12290_consen 8 YDALIEYLTENLS-----LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQ-------NPELEFSQRFQIIREADAIVYD 75 (113)
T ss_pred HHHHHHHHHHhHH-----HhcCCCCCCcccchHHHHHHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHHHHHH
Confidence 3688999999876 443111111111122223333222222222211 2255666666677777777888
Q ss_pred HHHhccCCCccccCCcchhhhhh
Q 041226 147 YEQRLSKSNYLAGDSFTLADLSH 169 (213)
Q Consensus 147 le~~L~~~~~l~G~~~t~aD~~l 169 (213)
||+-|++ ..+..+|-.-+.+
T Consensus 76 LeEVLa~---V~~~~aT~eQ~~F 95 (113)
T PF12290_consen 76 LEEVLAS---VWNQKATNEQIAF 95 (113)
T ss_pred HHHHHHH---HHcCCCCHHHHHH
Confidence 8888765 1233455544443
No 199
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=51.39 E-value=38 Score=21.51 Aligned_cols=57 Identities=12% Similarity=-0.042 Sum_probs=31.7
Q ss_pred eEEecCCCCccHHHHHHHHHHh----C-CceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEK----G-VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~----g-i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l 64 (213)
+..|+.++|+.|+...-.++.. + -......++.. .++..+..--..+|++. .+|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 4567889999998765444332 1 12333344432 23344444456788875 556543
No 200
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=50.60 E-value=37 Score=23.41 Aligned_cols=68 Identities=22% Similarity=0.219 Sum_probs=45.6
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCC------eeeeCCeeeee---hHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVP------VIEDGDFKLFE---SRAIIRY 73 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP------~L~~~~~~l~e---s~aI~~y 73 (213)
+..|+++.|..|..-.=.|+.+|...+.+..+-. ...++. +|-.+ +.+.+|..+-+ ..+|.++
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~--~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~l 99 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRR--LGIPYEMQSCHTAVINGYYVEGHVPAEAIARL 99 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHh--cCCChhhccccEEEEcCEEEeccCCHHHHHHH
Confidence 7899999999998888889988888777766521 222221 12111 33455655544 4789999
Q ss_pred HHHhc
Q 041226 74 YAAKY 78 (213)
Q Consensus 74 L~~~~ 78 (213)
|++..
T Consensus 100 l~~~p 104 (149)
T COG3019 100 LAEKP 104 (149)
T ss_pred HhCCC
Confidence 99986
No 201
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=50.39 E-value=15 Score=21.41 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=20.5
Q ss_pred EEecCCCCccHHHHHHHHHHhCCceEEEEcCCC
Q 041226 4 KVYGSVKAACPQRVLACLLEKGVEFEIVQVDLD 36 (213)
Q Consensus 4 ~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~ 36 (213)
++|+.....-+..++-+|+..||++........
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~ 34 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHMS 34 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S----
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCccc
Confidence 678777777899999999999999998876643
No 202
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=48.91 E-value=62 Score=19.94 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=36.2
Q ss_pred eEEecCCCCccHHHHHHHHHHhC----CceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKG----VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFK 63 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~g----i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~ 63 (213)
+..++.++|+.|++..-.++... -.+....++.. ..+.+.+.-....+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD----AQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc----CCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 45678889999997765554432 13555566654 345666555667899996 56654
No 203
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.27 E-value=22 Score=21.71 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=22.6
Q ss_pred CccHHHHHHHHHHhCCceEEEEcCCC
Q 041226 11 AACPQRVLACLLEKGVEFEIVQVDLD 36 (213)
Q Consensus 11 s~~~~~~~~~L~~~gi~~~~~~v~~~ 36 (213)
-+|++|+.-.|+..|++|++.+-..+
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSGID 40 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSGID 40 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCCCc
Confidence 36899999999999999999887653
No 204
>PRK10996 thioredoxin 2; Provisional
Probab=48.13 E-value=86 Score=21.33 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=36.6
Q ss_pred eEEecCCCCccHHHHHHHHHH----hCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeeee
Q 041226 3 VKVYGSVKAACPQRVLACLLE----KGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKLF 65 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l~ 65 (213)
+..|+.++|+.|+...-.++. .+-.+....++.. ..+.+.+..--..+|+++ .+|..+.
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~----~~~~l~~~~~V~~~Ptlii~~~G~~v~ 120 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE----AERELSARFRIRSIPTIMIFKNGQVVD 120 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC----CCHHHHHhcCCCccCEEEEEECCEEEE
Confidence 557788999999875444433 2334555556653 345665555567899986 5666443
No 205
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=47.83 E-value=84 Score=21.11 Aligned_cols=65 Identities=12% Similarity=0.027 Sum_probs=36.7
Q ss_pred eEEecCCCCccHHHHHH-------HHHHhCCceEEEEcCCCCCCCCChhhhh----hCCCCCCCeee---eCCeeeeeh
Q 041226 3 VKVYGSVKAACPQRVLA-------CLLEKGVEFEIVQVDLDEGEHKRPEFLL----RQPFGQVPVIE---DGDFKLFES 67 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~-------~L~~~gi~~~~~~v~~~~~~~~~~~~~~----~~P~~~vP~L~---~~~~~l~es 67 (213)
+..++..+|++|++.-- +.+...-.|..+.++..........+.+ .+-.+.+|+++ .+|..+..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 44578889999987632 2222334688888886532111111111 22355689886 357777755
No 206
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=47.60 E-value=50 Score=19.91 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=35.5
Q ss_pred eeEEecCCCCccHHHHH-----HHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 2 VVKVYGSVKAACPQRVL-----ACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 2 ~~~Ly~~~~s~~~~~~~-----~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
.++||....+|.+.++- ++=++.+-+|+.+.+|.. ..++.....----+|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~----~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVL----KQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcc----cCHhHHhhCCEEEechhh
Confidence 37899888878776542 233344779999999986 445555555555567775
No 207
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=45.81 E-value=85 Score=20.61 Aligned_cols=16 Identities=0% Similarity=0.102 Sum_probs=13.2
Q ss_pred eEEecCCCCccHHHHH
Q 041226 3 VKVYGSVKAACPQRVL 18 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~ 18 (213)
+..|+.++|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 5678899999999865
No 208
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=45.67 E-value=38 Score=25.91 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=16.8
Q ss_pred eEEecCCCCccHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLL 22 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~ 22 (213)
+.+|..+.||||++..--+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 56789999999999877665
No 209
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.21 E-value=33 Score=26.55 Aligned_cols=61 Identities=16% Similarity=0.049 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhh----CCCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 13 CPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLR----QPFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 13 ~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~----~P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
-|..||.+|+-.++-|+...|.+... ..+++..+ .-.-.+|.+..+|..|.+.-.|.+--+
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~LnE 213 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRLNE 213 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhhhh
Confidence 37899999999999999999999732 22333322 124568877799999988887776433
No 210
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=44.88 E-value=77 Score=19.83 Aligned_cols=52 Identities=13% Similarity=0.051 Sum_probs=31.5
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc----eEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE----FEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+..++.++|+.|+...-.++...-. +....++.. ..+.+.+..--..+|++.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG----DDRMLCRSQGVNSYPSLY 77 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC----ccHHHHHHcCCCccCEEE
Confidence 4567889999998765554333222 444555554 234555555567889885
No 211
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=44.44 E-value=49 Score=23.66 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=23.9
Q ss_pred CeeEEecCCCCccHHHH----HHHHHHh--CCceEEEEcCC
Q 041226 1 MVVKVYGSVKAACPQRV----LACLLEK--GVEFEIVQVDL 35 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~----~~~L~~~--gi~~~~~~v~~ 35 (213)
|.+.+|..+.||||... +-+.+.. ++.++.+...+
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L 41 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGL 41 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccc
Confidence 56889999999999844 3334443 66666665544
No 212
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=42.73 E-value=45 Score=24.23 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=18.1
Q ss_pred eEEecCCCCccHHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLE 23 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~ 23 (213)
+.+|..+.||||++..-.+..
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEECCCCccHHHHHHHHhh
Confidence 568899999999999888874
No 213
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=42.52 E-value=40 Score=20.44 Aligned_cols=33 Identities=12% Similarity=-0.065 Sum_probs=22.9
Q ss_pred eEEecCCCCccHHHHHHHHHHh------CCceEEEEcCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEK------GVEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~------gi~~~~~~v~~ 35 (213)
+.+|..+.||+|....-.+... ++.+..+.+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~ 39 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPL 39 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecccc
Confidence 4678999999999887777664 24455555443
No 214
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=42.24 E-value=58 Score=19.42 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.6
Q ss_pred CCCeeeeCCeeeeehHHHHHHHHHh
Q 041226 53 QVPVIEDGDFKLFESRAIIRYYAAK 77 (213)
Q Consensus 53 ~vP~L~~~~~~l~es~aI~~yL~~~ 77 (213)
+=||+..+| ..+|-.+|.+||.+.
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~ 38 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQN 38 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTT
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcC
Confidence 458888777 899999999999993
No 215
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=42.00 E-value=74 Score=19.97 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=31.1
Q ss_pred eEEecCCCCccHHHHHHHHHHhCC----ceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGV----EFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi----~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+..|+.++|+.|++..=.++...- .+....++.. ..+++.+...-..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC----chHHHHHHcCCCcccEEE
Confidence 456788999999876544433222 2344455543 335555555667789885
No 216
>PTZ00102 disulphide isomerase; Provisional
Probab=41.10 E-value=2.1e+02 Score=23.90 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=45.0
Q ss_pred eEEecCCCCccHHHHHHH-------HHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeee-----eehH
Q 041226 3 VKVYGSVKAACPQRVLAC-------LLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKL-----FESR 68 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~-------L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l-----~es~ 68 (213)
+..++.++|+.|++..=. ++..+-++....++.. ...+..+..--..+|++. .+|..+ ....
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~ 128 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT----EEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTAD 128 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC----CCHHHHHhcCCCcccEEEEEECCceEEecCCCCHH
Confidence 567888999999866421 1222345666666654 234554444455689885 444322 3567
Q ss_pred HHHHHHHHhcC
Q 041226 69 AIIRYYAAKYV 79 (213)
Q Consensus 69 aI~~yL~~~~~ 79 (213)
.|.+|+.+..+
T Consensus 129 ~l~~~l~~~~~ 139 (477)
T PTZ00102 129 GIVSWIKKLTG 139 (477)
T ss_pred HHHHHHHHhhC
Confidence 89999998765
No 217
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=40.98 E-value=82 Score=23.77 Aligned_cols=22 Identities=5% Similarity=0.220 Sum_probs=18.2
Q ss_pred eEEecCCCCccHHHHHHHHHHh
Q 041226 3 VKVYGSVKAACPQRVLACLLEK 24 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~ 24 (213)
+.+|..+.||||++..--+...
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEECCCChHHHHHHHHHHHH
Confidence 6788999999999988776654
No 218
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=39.33 E-value=95 Score=19.32 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=31.0
Q ss_pred eEEecCCCCccHHHHHHHHHHh-----CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEK-----GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+..++.++|+.|+...=.++.. +..+....++.. ..+...+...-..+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT----QEPGLSGRFFVTALPTIY 76 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc----CCHhHHHHcCCcccCEEE
Confidence 4567888999998765444332 333444555543 234455555567789886
No 219
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=39.10 E-value=57 Score=21.14 Aligned_cols=60 Identities=8% Similarity=-0.012 Sum_probs=34.6
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc---eEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeeeeeh
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE---FEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKLFES 67 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l~es 67 (213)
+..++.++|+.|+...-.++...-. .....++..+ . .+.+..--..+|+++ .+|..+...
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 4467889999898776555442222 2334444431 1 444444456799996 567665543
No 220
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.08 E-value=47 Score=23.97 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=22.2
Q ss_pred eEEecCCCCccHHHHH----HHHHHh----CCceEEEEcCC
Q 041226 3 VKVYGSVKAACPQRVL----ACLLEK----GVEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~----~~L~~~----gi~~~~~~v~~ 35 (213)
+++|+...||||.-.. -+.+.. ++.++.+.+..
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 4789999999998443 344454 56666666654
No 221
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=38.56 E-value=36 Score=22.81 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=27.1
Q ss_pred cCCCCccHHHHH----HHHHHhCCceEEEEcCCCC---CCCCChhhhh--hCCCCCCCeee--eCCeeeeehH
Q 041226 7 GSVKAACPQRVL----ACLLEKGVEFEIVQVDLDE---GEHKRPEFLL--RQPFGQVPVIE--DGDFKLFESR 68 (213)
Q Consensus 7 ~~~~s~~~~~~~----~~L~~~gi~~~~~~v~~~~---~~~~~~~~~~--~~P~~~vP~L~--~~~~~l~es~ 68 (213)
+.++||.|.++. -++....-....+.+..+. +.+....|++ .--...||+|+ ..+..|.|..
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhh
Confidence 346899998766 4444432244444444431 1111122322 12244599997 4455566554
No 222
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=38.14 E-value=50 Score=24.26 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=25.2
Q ss_pred eEEecCCCCccHHH----HHHHHHHhCCceEEEEcCC
Q 041226 3 VKVYGSVKAACPQR----VLACLLEKGVEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~----~~~~L~~~gi~~~~~~v~~ 35 (213)
+.+|+...||||.- +.-+++..+++++.+++..
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 78999999999874 3445566778888788765
No 223
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.99 E-value=56 Score=21.10 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=37.1
Q ss_pred CeeEEecCCCCccH------HHHHHHHHHhCCceEEEEcCCCCC------CCCChhhhhhCCCCCCCeeeeCC
Q 041226 1 MVVKVYGSVKAACP------QRVLACLLEKGVEFEIVQVDLDEG------EHKRPEFLLRQPFGQVPVIEDGD 61 (213)
Q Consensus 1 M~~~Ly~~~~s~~~------~~~~~~L~~~gi~~~~~~v~~~~~------~~~~~~~~~~~P~~~vP~L~~~~ 61 (213)
|.+++|....++.. +.+..+|+...|+++...+..... ..-+++.+..|.....|-+..++
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d 74 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGD 74 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCc
Confidence 45899977766644 357788998999999888765421 12223333333333566666443
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.73 E-value=2.1e+02 Score=22.73 Aligned_cols=74 Identities=8% Similarity=0.083 Sum_probs=52.5
Q ss_pred eEEecCCCCccHHHHHHHHHH----hCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeeeee------hHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLE----KGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKLFE------SRAI 70 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l~e------s~aI 70 (213)
+.+||.++|+-|....=.|+. .+=.|....|+.+ ..+......--..+|+.+ .+|.+|.+ -..|
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D----~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesql 122 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD----AEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQL 122 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC----cchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHH
Confidence 667899999988866555543 3346778888775 456666666677899886 66766544 3688
Q ss_pred HHHHHHhcCC
Q 041226 71 IRYYAAKYVN 80 (213)
Q Consensus 71 ~~yL~~~~~~ 80 (213)
-++|++..+.
T Consensus 123 r~~ld~~~~~ 132 (304)
T COG3118 123 RQFLDKVLPA 132 (304)
T ss_pred HHHHHHhcCh
Confidence 9999998763
No 225
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=37.24 E-value=1.1e+02 Score=19.42 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=33.4
Q ss_pred eEEecCCCCccHHHHHHHHHHhC------C----ceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCe
Q 041226 3 VKVYGSVKAACPQRVLACLLEKG------V----EFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDF 62 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~g------i----~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~ 62 (213)
+..|+.++|+.|+...-.++..- . .+....++.. ..++..+..--..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d----~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD----KESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC----CCHHHHHhCCCCcCCEEEEEeCCc
Confidence 45678899999997765554221 1 2344445443 234555555566789885 4444
No 226
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.12 E-value=2.3e+02 Score=23.14 Aligned_cols=133 Identities=15% Similarity=0.081 Sum_probs=74.7
Q ss_pred CCeeeeCCeeeeehHHHHHHHHHhcCCCCCCcc-CCChHHHHHHHHHHHHHHcccchh-----HHHHHHHHHhcccCCCC
Q 041226 54 VPVIEDGDFKLFESRAIIRYYAAKYVNQGPNLL-GNTLEEKALVDQWLEVEAHNLNDL-----AFNLVLQLVILPRMGQR 127 (213)
Q Consensus 54 vP~L~~~~~~l~es~aI~~yL~~~~~~~~~~l~-p~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~ 127 (213)
.+-..+.++.++|+.+|..-|...-. .++ |-+..++.++..|+.-+...-... +..++.....+ .|.+
T Consensus 98 w~~~~~~dQ~~VEaa~la~aL~~a~~----~lW~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~--~G~~ 171 (361)
T PF10022_consen 98 WGFIGDYDQRLVEAASLALALLRAPE----WLWDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKK--VGEE 171 (361)
T ss_pred cCCcccchhhHhHHHHHHHHHHHCHH----HHHhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHH--cCCC
Confidence 33444557999999999999988632 344 467778888888876444322111 11111111111 1444
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCccccCCcchhhhhhhhHHHHHHHhhhhhhhh-ccc-hhHHHHHHHHhc
Q 041226 128 SDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGDSFTLADLSHLPALRYLMNEAGMAHLV-TQR-KHVNAWWDKISS 201 (213)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~-~~~-p~l~~~~~~~~~ 201 (213)
.++ .++...|+.+|+...+.+|+..+.-.-.|.+..-+++.+. +-+.... +.. +...++.+|...
T Consensus 172 ~d~-------~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYns~aih~y~--l~~~~~~~~~~~~~~~~~~~Ra~~ 238 (361)
T PF10022_consen 172 YDE-------ERIDYDLERIEEWYLGDGWYSDGPEFQFDYYNSWAIHPYL--LLYARLMGDEDPERAARYRQRAQR 238 (361)
T ss_pred CcH-------HHHHHHHHHHHHHhccCCccccCCccCCcchHHHHHHHHH--HHHHHHhcccCHHHHHHHHHHHHH
Confidence 544 5677788888888777788876555667776633333333 1111111 122 246666666544
No 227
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=36.90 E-value=1.3e+02 Score=20.01 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=36.2
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc----eEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE----FEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKLF 65 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l~ 65 (213)
+.-++.++|+.|+...=.++..--. .....|+.+ ..+++....--..+|++. -+|..+.
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD----~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID----EVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC----CCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 3447889999998776555443322 234555554 345666665666799996 5665543
No 228
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=36.55 E-value=52 Score=23.45 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=23.0
Q ss_pred eEEecCCCCccHHHH----HHHHHHhCCceEEEEcCC
Q 041226 3 VKVYGSVKAACPQRV----LACLLEKGVEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~----~~~L~~~gi~~~~~~v~~ 35 (213)
+++|+...||||.-. +-+.+..++.++.+++..
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 468999999999854 334445577777777654
No 229
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=36.38 E-value=1e+02 Score=18.82 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=32.7
Q ss_pred eEEecCCCCccHHHHHHHHHHh----CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCe
Q 041226 3 VKVYGSVKAACPQRVLACLLEK----GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDF 62 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~ 62 (213)
+..++.++|+.|+...-.++.. +-.+....++.. ..+.+.+..-...+|+++ .+|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD----ENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC----CCHHHHHHcCCCcCCEEEEEeCCc
Confidence 4567888999998776555432 223555555543 234444444445799885 4554
No 230
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=35.43 E-value=39 Score=24.57 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=20.9
Q ss_pred CeeeeehHHHHHHHHHhcCCCCCCccC
Q 041226 61 DFKLFESRAIIRYYAAKYVNQGPNLLG 87 (213)
Q Consensus 61 ~~~l~es~aI~~yL~~~~~~~~~~l~p 87 (213)
+..|+||..|-+|+.++++.....++|
T Consensus 155 d~lIaDs~~I~~y~~~~y~~~~s~~Ia 181 (185)
T PF09314_consen 155 DRLIADSKGIQDYIKERYGRKKSTFIA 181 (185)
T ss_pred CEEEEcCHHHHHHHHHHcCCCCcEEec
Confidence 588999999999999999832234444
No 231
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.38 E-value=76 Score=18.86 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=26.9
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCC
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDL 35 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~ 35 (213)
|..-+..+.....+.+..-+|+..|++++..++..
T Consensus 1 m~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 1 MKYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 44344555555689999999999999999988764
No 232
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=33.37 E-value=2.7e+02 Score=22.95 Aligned_cols=73 Identities=10% Similarity=0.124 Sum_probs=44.2
Q ss_pred eEEecCCCCccHHHHHHHHH-----H--hCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCee-------eee
Q 041226 3 VKVYGSVKAACPQRVLACLL-----E--KGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFK-------LFE 66 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~-----~--~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~-------l~e 66 (213)
+.+|+.++|+.|.+..=.+. . .+-++....++.. ...++.+...-..+|++. .+|.. -.+
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~ 97 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT----EEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRD 97 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC----CcHHHHHhCCCccccEEEEEeCCccceeEecCCCC
Confidence 56788899999987642222 2 2323555555553 234555555556689885 34432 125
Q ss_pred hHHHHHHHHHhcC
Q 041226 67 SRAIIRYYAAKYV 79 (213)
Q Consensus 67 s~aI~~yL~~~~~ 79 (213)
...|.+++.+..+
T Consensus 98 ~~~l~~~i~~~~~ 110 (462)
T TIGR01130 98 ADGIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHHHhcC
Confidence 6788889988765
No 233
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=33.36 E-value=1.1e+02 Score=20.90 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=32.5
Q ss_pred eEEecCCCCccHHHHHHHHHHh----CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--e-CCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEK----GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--D-GDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~-~~~~l 64 (213)
+..|+.++|+.|+...=.+... +-.+..+.++.... ....+....-...+|.++ + +|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 4567888999998766555432 21234444444321 123344444455689885 3 45544
No 234
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=33.17 E-value=1.5e+02 Score=19.77 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=29.0
Q ss_pred CCCccHHHHHHHH----HHhCCceEEEEcCCCCCC---CCChhhhhhCCCC-CCCeee--eCCeeeee
Q 041226 9 VKAACPQRVLACL----LEKGVEFEIVQVDLDEGE---HKRPEFLLRQPFG-QVPVIE--DGDFKLFE 66 (213)
Q Consensus 9 ~~s~~~~~~~~~L----~~~gi~~~~~~v~~~~~~---~~~~~~~~~~P~~-~vP~L~--~~~~~l~e 66 (213)
++||.|+...=.+ ...+-.+....|+.++.. ....++...--.. .+|++. .++..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 7999998654333 333323555666654211 1123443322223 699996 44444443
No 235
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=33.07 E-value=43 Score=21.40 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=20.7
Q ss_pred eEEecCCCCccHHHHHHHHHH---h----CCceEEEEcCCC
Q 041226 3 VKVYGSVKAACPQRVLACLLE---K----GVEFEIVQVDLD 36 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~---~----gi~~~~~~v~~~ 36 (213)
+.+|+.++||+|++..-.+.. . .-.+..+.++..
T Consensus 9 v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 567789999999987655542 1 114666666664
No 236
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=32.59 E-value=1.2e+02 Score=18.35 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=33.4
Q ss_pred eEEecCCCCccHHHHHHHHHHh------CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEK------GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~------gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+.+|+.++|+.|+...-.++.. +-.+....++.. ....+.+...-..+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT----ANNDLCSEYGVRGYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc----chHHHHHhCCCCCCCEEE
Confidence 5678888999999876666442 234555555543 235555555556789885
No 237
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=32.33 E-value=1.1e+02 Score=19.87 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=23.5
Q ss_pred EEecCCCCccHHHHHHHHHHhCCceEEEE
Q 041226 4 KVYGSVKAACPQRVLACLLEKGVEFEIVQ 32 (213)
Q Consensus 4 ~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~ 32 (213)
.|......|...-++.+.+++|+|++...
T Consensus 59 vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 59 VLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 34556677888999999999999988765
No 238
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=32.30 E-value=80 Score=16.35 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=20.5
Q ss_pred CCCCCCeeeeCCeeeeehHHHHHHHH
Q 041226 50 PFGQVPVIEDGDFKLFESRAIIRYYA 75 (213)
Q Consensus 50 P~~~vP~L~~~~~~l~es~aI~~yL~ 75 (213)
-.|.+|....++..+.....|.+|+.
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 35678887667888888888888875
No 239
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=31.93 E-value=1.7e+02 Score=20.15 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=44.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc--eEEEEcCCCCCCCCChhhhhhCCCC----CCCeeeeCCeeeeehHHHHHHHHH
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE--FEIVQVDLDEGEHKRPEFLLRQPFG----QVPVIEDGDFKLFESRAIIRYYAA 76 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~--~~~~~v~~~~~~~~~~~~~~~~P~~----~vP~L~~~~~~l~es~aI~~yL~~ 76 (213)
+++++...|++|..---+|..+.-+ +....+.... .-......+.. ..=.++.+|..+.+|.|+++-+..
T Consensus 10 ~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~----g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~ 85 (137)
T COG3011 10 LVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEP----GQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRL 85 (137)
T ss_pred EEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCch----hhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHH
Confidence 6788888899988766666666544 4444433321 12222232221 122334789999999999998888
Q ss_pred hc
Q 041226 77 KY 78 (213)
Q Consensus 77 ~~ 78 (213)
.-
T Consensus 86 L~ 87 (137)
T COG3011 86 LP 87 (137)
T ss_pred CC
Confidence 64
No 240
>PRK09266 hypothetical protein; Provisional
Probab=31.84 E-value=55 Score=25.11 Aligned_cols=60 Identities=22% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeCCeeeeehHHHHHHHHHhcC
Q 041226 20 CLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDGDFKLFESRAIIRYYAAKYV 79 (213)
Q Consensus 20 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~~~~l~es~aI~~yL~~~~~ 79 (213)
.++..|++++...+....-....+-|.-.+-.|-+||-..|+..+.+...|.+.|.+.+.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 455668999998887642222234455555679999998887777655677777776654
No 241
>COG3646 Uncharacterized phage-encoded protein [Function unknown]
Probab=31.67 E-value=58 Score=23.25 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 041226 128 SDTALVHNLEQKLEAVLNIYEQRLSKSNYLAGD 160 (213)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 160 (213)
.+.+.......++-+.++.+|..|...++..+.
T Consensus 84 ~tg~k~~~Fk~~~VkrF~Eme~~l~~~~~~~~~ 116 (167)
T COG3646 84 LTGEKVRQFKAALVKRFDEMEEALAERAFARAL 116 (167)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 444455666778888899999998887766653
No 242
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=31.57 E-value=1.3e+02 Score=25.38 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=38.0
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeC-----Ceeeeeh
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDG-----DFKLFES 67 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~-----~~~l~es 67 (213)
+.++.+-.|..++.+..+|+...++|+.+.+.- .|.+|+|.++ ..+|+|.
T Consensus 63 LVFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~~---------------kg~lP~LT~~~kGRy~lII~EN 117 (487)
T PF12062_consen 63 LVFVESQYSQLGQDIVAILESNRFKYKVEIASG---------------KGDLPVLTDNDKGRYSLIIFEN 117 (487)
T ss_pred EEEEeeccchhhHHHHHHHHhceeeEEEEEccC---------------CCCCCccccCCCCcEEEEEehh
Confidence 445566678899999999999999999888753 2458899855 2567665
No 243
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=31.49 E-value=1.1e+02 Score=21.93 Aligned_cols=60 Identities=8% Similarity=-0.079 Sum_probs=34.7
Q ss_pred eEEecCCCCccHHHHHHHHHHhC---CceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeeeeeh
Q 041226 3 VKVYGSVKAACPQRVLACLLEKG---VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKLFES 67 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~g---i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l~es 67 (213)
+..++.++|+.|..+--.|+..- -......|+... . ......+-..+|+++ -+|..+..-
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~-~l~~~f~v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T-GASDEFDTDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h-hhHHhCCCCCCCEEEEEECCEEEEEE
Confidence 44577888998885543332221 134455555431 1 455556777899996 577766543
No 244
>PF06233 Usg: Usg-like family; InterPro: IPR009354 This is a family of bacterial proteins, referred to as Usg. Usg is found in the same operon as trpF, trpB, and trpA and is expressed in a coupled transcription-translation system [].
Probab=31.27 E-value=71 Score=19.64 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=25.8
Q ss_pred ccCCcchhhhhh----hhHHHHHHHhhhhhhhhccchhHHHHHHHHhc
Q 041226 158 AGDSFTLADLSH----LPALRYLMNEAGMAHLVTQRKHVNAWWDKISS 201 (213)
Q Consensus 158 ~G~~~t~aD~~l----~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 201 (213)
-|-.+|.|.|.- .+.+.+...+..+ ++..++|.|.++++-++.
T Consensus 4 ~GYgLTTAeilYrmPDhp~lLQsyvWQ~y-DlaP~fP~L~~Fl~fW~~ 50 (82)
T PF06233_consen 4 KGYGLTTAEILYRMPDHPSLLQSYVWQDY-DLAPDFPELFKFLDFWQR 50 (82)
T ss_pred ccccccceeeeeeCCCcHHHHHHHHhhhc-ccCCCCHHHHHHHHHHHH
Confidence 355566666642 1222232214555 667789999999987643
No 245
>PF13728 TraF: F plasmid transfer operon protein
Probab=30.41 E-value=2.3e+02 Score=21.10 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=23.8
Q ss_pred eEEecCCCCccHH----HHHHHHHHhCCceEEEEcC
Q 041226 3 VKVYGSVKAACPQ----RVLACLLEKGVEFEIVQVD 34 (213)
Q Consensus 3 ~~Ly~~~~s~~~~----~~~~~L~~~gi~~~~~~v~ 34 (213)
+.+++.+.||+|+ .++.+....|+....+.+|
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 5677888999997 4566667778877777765
No 246
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=30.11 E-value=79 Score=19.35 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=23.8
Q ss_pred hhhhhhHHHHHHHhhhhhhhhccchhHHHHHHHHh
Q 041226 166 DLSHLPALRYLMNEAGMAHLVTQRKHVNAWWDKIS 200 (213)
Q Consensus 166 D~~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~ 200 (213)
|+..|+++.++. .-+-....++--++..|++++.
T Consensus 43 DvL~~~ll~~L~-~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 43 DVLTFCLLERLS-NPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred HHHHHHHHHHHh-cccchhcCcCCCCHHHHHHHHh
Confidence 888888888877 3333233455678999998874
No 247
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=30.10 E-value=90 Score=21.70 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=29.1
Q ss_pred eEEecCCCCccHHHHHHHHHH------------hCCceEEEEcCCCCCCCCChhhhhhCC
Q 041226 3 VKVYGSVKAACPQRVLACLLE------------KGVEFEIVQVDLDEGEHKRPEFLLRQP 50 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~------------~gi~~~~~~v~~~~~~~~~~~~~~~~P 50 (213)
+-.|+.++||.|++-.=.|.. .+-.++.+.|+.+..+..-..|.+..+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~ 88 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMP 88 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCC
Confidence 345678899999987766654 122477777776543322334555554
No 248
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=29.11 E-value=1.2e+02 Score=19.19 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=32.7
Q ss_pred eEEecCCCCccHHHHHHHHHHhC---CceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKG---VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKL 64 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~g---i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l 64 (213)
+..|+.++|+.|++..=.++... -......++..... ...++.+..--..+|+++ .+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-STMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-HHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 45678889998986655554321 12334444443110 112455455556689885 456544
No 249
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=27.69 E-value=1e+02 Score=16.54 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=14.8
Q ss_pred hhHHHHHHHHhcChhHHHHHhh
Q 041226 190 KHVNAWWDKISSRPAWKKLASL 211 (213)
Q Consensus 190 p~l~~~~~~~~~~p~~~~~~~~ 211 (213)
..+.++++++.+.|.+++-+..
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~ 25 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKA 25 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHh
Confidence 3567777777777777765543
No 250
>PRK06852 aldolase; Validated
Probab=27.08 E-value=1.5e+02 Score=23.51 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=37.5
Q ss_pred HHHhCCceEEEEcCCCCCCCCChhhhhhCCCC-CCCeeeeCCeeeeehHHHHHHHHHh
Q 041226 21 LLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFG-QVPVIEDGDFKLFESRAIIRYYAAK 77 (213)
Q Consensus 21 L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~-~vP~L~~~~~~l~es~aI~~yL~~~ 77 (213)
..++|.++-.+......++...+.|....-.. .+|+++-+|... +...+++.+.+.
T Consensus 197 aaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~-~~~e~L~~v~~a 253 (304)
T PRK06852 197 AACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSST-DPEEFLKQLYEQ 253 (304)
T ss_pred HHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCC-CHHHHHHHHHHH
Confidence 35677777776665332222346777665544 899999988877 557788888765
No 251
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=27.02 E-value=88 Score=19.73 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=32.4
Q ss_pred eEEecCCCCccHHHHHHHHHHh----CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCe
Q 041226 3 VKVYGSVKAACPQRVLACLLEK----GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDF 62 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~ 62 (213)
+..++.++|+.|+...-.++.. +-.+....++...+ ....+.....-..+|.+. .+|.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~--~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED--KNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc--ccHHHHHHcCCCcCCEEEEEeCCC
Confidence 4567888999998764444333 21233444444321 134555555566789885 4443
No 252
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=26.88 E-value=67 Score=20.38 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=28.9
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc---eEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE---FEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+..|+.++|+.|++..=.++...-. .....++.. ...+...+..--..+|++.
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~---~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES---SIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC---CCCHHHHHhcCCeecCEEE
Confidence 5567889999998776555433222 222333321 1223444444456688875
No 253
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=26.84 E-value=1.6e+02 Score=18.11 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=31.8
Q ss_pred eEEecCCCCccHHHHHHHH-----HHhC--CceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCe
Q 041226 3 VKVYGSVKAACPQRVLACL-----LEKG--VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDF 62 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L-----~~~g--i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~ 62 (213)
+..|+.++|+.|+...=.+ +..+ -.+....++.. ......+...-..+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT----QHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC----CChhhHhhcCCCcCCEEEEEeCCC
Confidence 4567888999998654333 3333 23555555543 223444444456789875 4443
No 254
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=26.84 E-value=1.2e+02 Score=19.46 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=30.5
Q ss_pred eEEecCCCCccHHHHHHHHHH-----hCCceEEEEcCCCCCCCCChhhh-hhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLE-----KGVEFEIVQVDLDEGEHKRPEFL-LRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~-~~~P~~~vP~L~ 58 (213)
+..|+.++||.|++..-.++. .+..+....++... ....+. +......+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~---~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG---EQREFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc---cchhhHHhhcCCCcCCEEE
Confidence 567889999999876544433 23345555555432 112232 234566789885
No 255
>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat. In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).
Probab=26.33 E-value=3.8e+02 Score=22.33 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=40.8
Q ss_pred ccCCChHHHHHHHHHHHHHHcccchhHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhcc
Q 041226 85 LLGNTLEEKALVDQWLEVEAHNLNDLAFNLVLQLVILPRMGQRSDTALVHNLEQKLEAVLNIYEQRLS 152 (213)
Q Consensus 85 l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~ 152 (213)
|+-++......+..+++|.........-.+.+-.... -..+++.+....-+....+.|.+.|+
T Consensus 281 Lw~k~~~g~~~l~AIIDwQ~vh~G~~~eDl~Rll~~~-----lS~edRR~~~~~lL~~Yy~~f~~~l~ 343 (414)
T PF07914_consen 281 LWDKDSDGKLKLKAIIDWQCVHRGSPAEDLARLLVSC-----LSGEDRREHTEELLEYYYDTFTEALE 343 (414)
T ss_pred eeecCCchhHHHHHHHHHHHhhcCchHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444456778888888877776655555443322 35556666666677777888888883
No 256
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=26.16 E-value=1.6e+02 Score=18.55 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=35.9
Q ss_pred eEEecCCCCccHHHHHH----HHH-HhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLA----CLL-EKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~----~L~-~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
++||....+|.++++-- +++ +.+=.|+.+.+|.. ..++..+..----.|+|+
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~----~qP~lAE~~~IvATPtLI 62 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVL----KNPQLAEEDKILATPTLS 62 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcc----cCHhHHhHCCEEEecHHh
Confidence 78998888888875432 233 44456999999986 446666666666677775
No 257
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=25.45 E-value=1.5e+02 Score=19.54 Aligned_cols=60 Identities=13% Similarity=-0.026 Sum_probs=37.5
Q ss_pred eEEecCC--CCccHHHHHHHHHHhCCceE----EEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeeeee
Q 041226 3 VKVYGSV--KAACPQRVLACLLEKGVEFE----IVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKLFE 66 (213)
Q Consensus 3 ~~Ly~~~--~s~~~~~~~~~L~~~gi~~~----~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l~e 66 (213)
+-+|+.. .||-|+.+.-.|++.--.|. ...++.. ..++.....--..+|+|+ .+|..+..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid----~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRA----DEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECC----CCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 3456666 49999988877766554442 3344443 335666666667799996 57766543
No 258
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=25.07 E-value=97 Score=27.71 Aligned_cols=32 Identities=13% Similarity=0.326 Sum_probs=25.6
Q ss_pred CCCCCCeeeeC--------CeeeeehHHHHHHHHHhcCCC
Q 041226 50 PFGQVPVIEDG--------DFKLFESRAIIRYYAAKYVNQ 81 (213)
Q Consensus 50 P~~~vP~L~~~--------~~~l~es~aI~~yL~~~~~~~ 81 (213)
+-.+||.++.. ...++|...|+++|+++++..
T Consensus 388 lG~RVP~iVISPwsrgG~V~s~~~DHtSvLrflE~~fgl~ 427 (690)
T TIGR03396 388 LGPRVPMYVISPWSKGGWVNSQVFDHTSVLRFLEKRFGVR 427 (690)
T ss_pred ccceeeEEEECCCCCCCcccCccccHHHHHHHHHHHhCCC
Confidence 34489999853 366889999999999999844
No 259
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=25.07 E-value=4.2e+02 Score=23.18 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=31.4
Q ss_pred eEEecCCCCccHHHHHHH-H------HHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLAC-L------LEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~-L------~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+.-++.++|+.|+...-. + +..+ .+....+|..+.+....++.+......+|++.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 345788899999865321 1 1222 46666666654332334555555555689885
No 260
>PRK09301 circadian clock protein KaiB; Provisional
Probab=24.98 E-value=1.7e+02 Score=19.09 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=36.5
Q ss_pred eEEecCCCCccHHHHHH----HHH-HhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLA----CLL-EKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~----~L~-~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
++||....+|.++++-- +++ +++=.|+.+.+|.. ..++.....----+|+|+
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~----~qPelAE~~~IvATPTLI 65 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVL----KNPQLAEEDKILATPTLA 65 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcc----cCHhHHhHCCeEEecHHh
Confidence 78999988888875432 232 44556999999986 456666666666678875
No 261
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=24.41 E-value=1.6e+02 Score=19.34 Aligned_cols=52 Identities=15% Similarity=0.021 Sum_probs=30.6
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc----eEEEEcCCCCCCCCChhhh-hhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE----FEIVQVDLDEGEHKRPEFL-LRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~-~~~P~~~vP~L~ 58 (213)
+-.|+.++|+.|+...-.+++..-. .....|+.. ...... +..--..+|+|.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d----~~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW----WPQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC----CChHHHHHhcCCcccCEEE
Confidence 4568899999999877666655432 333445543 223343 223335688885
No 262
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=24.28 E-value=1.3e+02 Score=19.59 Aligned_cols=54 Identities=6% Similarity=0.025 Sum_probs=28.3
Q ss_pred eEEecCCCCccHHHHHHHHHHhCCc-------eEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKGVE-------FEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~gi~-------~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+..|+.++|+.|+...-.++...-. +....++.. ....+++.+..--..+|.+.
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~--~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA--DEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc--chhhHHHHHhCCCCCCCEEE
Confidence 4567889999888654444332221 222333321 11234454444456789885
No 263
>PF12728 HTH_17: Helix-turn-helix domain
Probab=24.23 E-value=1.3e+02 Score=16.10 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCCCCCeeeeCCeeeeehHHHHHHHHHh
Q 041226 50 PFGQVPVIEDGDFKLFESRAIIRYYAAK 77 (213)
Q Consensus 50 P~~~vP~L~~~~~~l~es~aI~~yL~~~ 77 (213)
-.|.+|....++.....-..|.+|+.++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 23 RQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 3567888887788899999999998763
No 264
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=23.46 E-value=57 Score=20.28 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=28.7
Q ss_pred eEEecCCCCccHHHHHHHHHHhC------CceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLEKG------VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+.+++.++|+.|+...-.++... ..+....++.... +.....-...+|.+.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFVVDGFPTIL 78 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhccCCCCCEEE
Confidence 55788899999987655443332 2355555554321 122222226889885
No 265
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=23.07 E-value=1.3e+02 Score=25.01 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=34.1
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEEEEcCCCCCC
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEIVQVDLDEGE 39 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~ 39 (213)
|++.|++..+|+.+....+..-+.|++.-+.-+.+..++
T Consensus 200 ~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~g 238 (472)
T COG5016 200 VPVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGG 238 (472)
T ss_pred CeeEEecccccchHHHHHHHHHHhCcchhhhhhccccCC
Confidence 578999999999999999999999999888888766544
No 266
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=22.93 E-value=1.9e+02 Score=21.02 Aligned_cols=24 Identities=0% Similarity=-0.071 Sum_probs=16.3
Q ss_pred EecCCCCccHH---HHHHHHHHhCCce
Q 041226 5 VYGSVKAACPQ---RVLACLLEKGVEF 28 (213)
Q Consensus 5 Ly~~~~s~~~~---~~~~~L~~~gi~~ 28 (213)
-|+..+|+-|+ .....|+..|+|+
T Consensus 65 n~~Aswc~~c~~e~P~l~~l~~~~~~~ 91 (184)
T TIGR01626 65 HHIAGRTSAKEXNASLIDAIKAAKFPP 91 (184)
T ss_pred EEEecCCChhhccchHHHHHHHcCCCc
Confidence 35566777666 4556667788888
No 267
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=22.60 E-value=1.4e+02 Score=21.51 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=26.7
Q ss_pred CeeEEecCCCCccHHHHHHHHHHhCCceEE
Q 041226 1 MVVKVYGSVKAACPQRVLACLLEKGVEFEI 30 (213)
Q Consensus 1 M~~~Ly~~~~s~~~~~~~~~L~~~gi~~~~ 30 (213)
|.+++=+.+.|+-+.-.+.+.+..|+++-.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 678888999999999999999999998755
No 268
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=22.36 E-value=2.1e+02 Score=17.92 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=29.6
Q ss_pred eEEecCCCCccHHHHHHHHHH----h---CCceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLE----K---GVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~----~---gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+..|+.++||.|++..-.++. . |..+....++.. ..+.+.+..--..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT----AYSSIASEFGVRGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc----cCHhHHhhcCCccccEEE
Confidence 567888999999965544422 1 333444444443 223444444445689885
No 269
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=22.14 E-value=2e+02 Score=17.64 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=31.5
Q ss_pred eEEecCCCCccHHHHHHHHHH----hC--CceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLE----KG--VEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~----~g--i~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+..|+.++|+.|+...-.++. .+ -.+....++.... .+.+.+...-..+|++.
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---NKDLAKKYGVSGFPTLK 80 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---chhhHHhCCCCCcCEEE
Confidence 557788999999855443322 22 2355666665320 34555555567789885
No 270
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=22.06 E-value=28 Score=21.42 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=24.0
Q ss_pred hccCCCccccCCcchhhh--hhhhHHHHHHHhhhhhhhhccchh
Q 041226 150 RLSKSNYLAGDSFTLADL--SHLPALRYLMNEAGMAHLVTQRKH 191 (213)
Q Consensus 150 ~L~~~~~l~G~~~t~aD~--~l~~~l~~~~~~~~~~~~~~~~p~ 191 (213)
.+...+-.+|++|++..- .+..++.++.......+++++||.
T Consensus 12 ~I~~~P~i~gGkP~I~GtRI~V~~Il~~l~~G~s~eeil~dyp~ 55 (79)
T COG2442 12 RIVITPGICGGKPCIRGTRIPVWDILEMLAAGESIEEILADYPD 55 (79)
T ss_pred eeEeCCcccCCcceEeCceecHHHHHHHHHCCCCHHHHHHhCCC
Confidence 344456667777777665 345555565522233356777884
No 271
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=21.95 E-value=2e+02 Score=17.53 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=30.3
Q ss_pred eEEecCCCCccHHHHHHHHHH-----hCC-ceEEEEcCCCCCCCCChhhhhhCCCCCCCeee
Q 041226 3 VKVYGSVKAACPQRVLACLLE-----KGV-EFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE 58 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~-----~gi-~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~ 58 (213)
+..|+.++|+.|+...-.++. .+- .+....++.. ....+........+|.+.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----AEKDLASRFGVSGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----chHHHHHhCCCCcCCEEE
Confidence 678899999999875444432 221 1334444432 335555555566799884
No 272
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=21.40 E-value=1.3e+02 Score=21.62 Aligned_cols=33 Identities=6% Similarity=-0.068 Sum_probs=17.8
Q ss_pred eEEecCCCCccHHHHHHHHHHhC-CceEEEEcCC
Q 041226 3 VKVYGSVKAACPQRVLACLLEKG-VEFEIVQVDL 35 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~g-i~~~~~~v~~ 35 (213)
+..|+..+||.|++-.=.|.... -.++...++.
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~ 105 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNY 105 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 33467789999986543333221 2344455554
No 273
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=21.07 E-value=66 Score=20.03 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=13.9
Q ss_pred eEEecCCCCccHHHHHHHHHHh
Q 041226 3 VKVYGSVKAACPQRVLACLLEK 24 (213)
Q Consensus 3 ~~Ly~~~~s~~~~~~~~~L~~~ 24 (213)
+-.++..+|+.|.+..-.+...
T Consensus 23 ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 23 LVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred EEEeecccChhHHHHhHHHHHH
Confidence 4456777899888655444433
No 274
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=20.96 E-value=66 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.625 Sum_probs=15.9
Q ss_pred cchhHHHHHHHHhcChhHH
Q 041226 188 QRKHVNAWWDKISSRPAWK 206 (213)
Q Consensus 188 ~~p~l~~~~~~~~~~p~~~ 206 (213)
..-.|++|++|+.++|..+
T Consensus 110 rr~~LqrfL~RV~~hP~L~ 128 (140)
T cd06891 110 LKANLQRWFNRVCSDPILI 128 (140)
T ss_pred HHHHHHHHHHHHhCChhhc
Confidence 3678999999999998665
No 275
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.76 E-value=74 Score=21.18 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHhCCceEEEEcCCCCCCCCChhhhhhCCCCCCCeeeeC---CeeeeehHHHHHHHHHh
Q 041226 13 CPQRVLACLLEKGVEFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIEDG---DFKLFESRAIIRYYAAK 77 (213)
Q Consensus 13 ~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~~~---~~~l~es~aI~~yL~~~ 77 (213)
|+.-++=+++..|++++....+...+- ..+.-....=.|.+|.++|- =.+.-|...|+.||.++
T Consensus 24 fP~LakEl~e~~g~~I~~~r~~~~~~l-~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 24 FPALAKELEEEEGISIEGYRLDEEQVL-EEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred hHHHHHHHhccCCCceeeeechhhhhh-hhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 455566677788888887666532110 00000122336778888753 34456778888888886
No 276
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.54 E-value=1.7e+02 Score=21.39 Aligned_cols=57 Identities=11% Similarity=-0.051 Sum_probs=32.7
Q ss_pred EEecCCCCccHHHHHHHHHHhCC---ceEEEEcCCCCCCCCChhhhhhCCCCCCCeee--eCCeeeeeh
Q 041226 4 KVYGSVKAACPQRVLACLLEKGV---EFEIVQVDLDEGEHKRPEFLLRQPFGQVPVIE--DGDFKLFES 67 (213)
Q Consensus 4 ~Ly~~~~s~~~~~~~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~P~~~vP~L~--~~~~~l~es 67 (213)
..++.++|+.|+.+-=.|+..-- ....+.++.. ......|-..+|++. -+|..+..-
T Consensus 107 V~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad-------~~~~~~~i~~lPTlliyk~G~~v~~i 168 (192)
T cd02988 107 VHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST-------QCIPNYPDKNLPTILVYRNGDIVKQF 168 (192)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH-------HhHhhCCCCCCCEEEEEECCEEEEEE
Confidence 35677889888866544443332 2333444332 123456777899996 677665543
Done!