Query 041227
Match_columns 1468
No_of_seqs 56 out of 58
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 99.8 2.4E-12 5.2E-17 168.3 92.9 491 869-1413 1284-1819(1930)
2 PF10358 NT-C2: N-terminal C2 99.7 3E-18 6.6E-23 168.8 7.8 124 5-128 13-141 (143)
3 KOG0161 Myosin class II heavy 99.7 4.3E-09 9.4E-14 138.7 91.4 733 284-1212 907-1694(1930)
4 KOG4674 Uncharacterized conser 99.7 7.6E-09 1.6E-13 134.8 91.6 658 645-1413 799-1519(1822)
5 KOG4674 Uncharacterized conser 99.7 4.2E-08 9.2E-13 128.1 100.4 313 984-1307 745-1097(1822)
6 TIGR00606 rad50 rad50. This fa 99.7 5.4E-09 1.2E-13 136.1 79.6 130 1013-1145 868-1001(1311)
7 TIGR00606 rad50 rad50. This fa 99.5 1.2E-06 2.7E-11 114.7 89.5 151 1099-1270 798-948 (1311)
8 TIGR02168 SMC_prok_B chromosom 99.4 3.6E-07 7.8E-12 115.0 58.5 95 942-1036 281-375 (1179)
9 TIGR02169 SMC_prok_A chromosom 99.4 1.4E-05 3E-10 101.6 75.1 37 1232-1269 980-1016(1164)
10 TIGR02169 SMC_prok_A chromosom 99.3 8.8E-07 1.9E-11 112.2 58.4 115 984-1102 385-499 (1164)
11 TIGR02168 SMC_prok_B chromosom 99.3 2.9E-05 6.4E-10 98.2 73.4 88 1054-1141 841-928 (1179)
12 COG1196 Smc Chromosome segrega 99.2 2.6E-05 5.7E-10 101.6 65.0 40 1231-1271 970-1009(1163)
13 PRK02224 chromosome segregatio 99.2 1.9E-06 4.1E-11 108.0 51.4 120 1334-1462 570-689 (880)
14 PRK02224 chromosome segregatio 99.1 1.3E-05 2.9E-10 100.5 55.1 89 1061-1149 345-433 (880)
15 COG1196 Smc Chromosome segrega 99.0 0.00055 1.2E-08 89.6 64.2 101 1047-1147 824-931 (1163)
16 PRK03918 chromosome segregatio 99.0 3.6E-05 7.8E-10 96.5 50.9 41 972-1012 195-235 (880)
17 PF01576 Myosin_tail_1: Myosin 98.9 1.5E-10 3.3E-15 145.1 0.0 512 850-1415 193-763 (859)
18 PF10174 Cast: RIM-binding pro 98.9 0.0011 2.4E-08 83.8 57.0 503 870-1464 140-709 (775)
19 PF01576 Myosin_tail_1: Myosin 98.9 4.7E-10 1E-14 140.7 0.4 53 305-357 10-62 (859)
20 PRK01156 chromosome segregatio 98.7 0.00041 8.9E-09 88.0 47.2 31 1176-1206 407-437 (895)
21 PRK03918 chromosome segregatio 98.7 0.0032 6.9E-08 79.5 71.5 142 981-1147 553-699 (880)
22 PF07888 CALCOCO1: Calcium bin 98.5 0.00011 2.3E-09 89.2 32.0 96 1077-1201 141-236 (546)
23 PF10174 Cast: RIM-binding pro 98.4 0.021 4.5E-07 72.7 63.1 237 335-612 4-257 (775)
24 PRK01156 chromosome segregatio 98.4 0.028 6.1E-07 71.9 51.2 19 1184-1202 475-493 (895)
25 PF07888 CALCOCO1: Calcium bin 98.3 0.00065 1.4E-08 82.6 32.4 286 1048-1400 168-467 (546)
26 PF00038 Filament: Intermediat 98.2 0.00049 1.1E-08 77.1 25.8 287 1117-1454 7-304 (312)
27 PF05557 MAD: Mitotic checkpoi 98.1 1.2E-06 2.6E-11 108.6 3.9 436 990-1465 60-535 (722)
28 PF12128 DUF3584: Protein of u 98.1 0.098 2.1E-06 69.6 60.8 150 1129-1289 726-881 (1201)
29 PF05557 MAD: Mitotic checkpoi 98.1 2.1E-06 4.4E-11 106.6 4.4 197 1046-1271 194-396 (722)
30 PF12128 DUF3584: Protein of u 98.0 0.18 4E-06 67.2 62.9 208 1180-1404 673-881 (1201)
31 KOG4643 Uncharacterized coiled 97.9 0.18 3.8E-06 65.2 45.7 414 912-1410 203-662 (1195)
32 PF05701 WEMBL: Weak chloropla 97.8 0.11 2.4E-06 63.6 37.9 438 986-1461 29-477 (522)
33 KOG0250 DNA repair protein RAD 97.8 0.12 2.7E-06 67.2 37.6 288 863-1189 264-604 (1074)
34 KOG4643 Uncharacterized coiled 97.7 0.25 5.4E-06 63.9 38.4 276 886-1201 301-601 (1195)
35 COG0419 SbcC ATPase involved i 97.7 0.39 8.6E-06 62.3 53.3 32 1266-1297 522-553 (908)
36 PF00038 Filament: Intermediat 97.6 0.036 7.8E-07 62.5 27.7 233 1083-1387 72-306 (312)
37 KOG0962 DNA repair protein RAD 97.6 0.63 1.4E-05 62.1 69.5 104 1176-1288 1008-1116(1294)
38 KOG0978 E3 ubiquitin ligase in 97.6 0.45 9.7E-06 60.3 49.3 520 749-1384 72-607 (698)
39 KOG0250 DNA repair protein RAD 97.5 0.86 1.9E-05 59.8 51.0 199 1079-1286 734-939 (1074)
40 KOG0612 Rho-associated, coiled 97.4 0.24 5.3E-06 65.1 33.7 164 991-1169 494-660 (1317)
41 KOG0978 E3 ubiquitin ligase in 97.4 0.9 1.9E-05 57.8 53.5 148 910-1072 464-615 (698)
42 PF09730 BicD: Microtubule-ass 97.3 0.49 1.1E-05 60.3 34.2 335 1033-1413 23-430 (717)
43 PHA02562 46 endonuclease subun 97.3 0.078 1.7E-06 63.9 26.3 138 967-1108 238-380 (562)
44 PF00261 Tropomyosin: Tropomyo 97.3 0.071 1.5E-06 59.0 23.9 224 885-1161 7-233 (237)
45 COG0419 SbcC ATPase involved i 97.2 1.5 3.3E-05 57.1 52.9 43 1076-1118 400-442 (908)
46 PF09730 BicD: Microtubule-ass 97.1 0.4 8.6E-06 61.1 30.6 145 540-724 28-184 (717)
47 PF05483 SCP-1: Synaptonemal c 97.1 1.5 3.3E-05 55.4 55.6 143 1026-1171 534-721 (786)
48 PHA02562 46 endonuclease subun 97.1 0.05 1.1E-06 65.6 21.9 202 1176-1389 172-376 (562)
49 PF09726 Macoilin: Transmembra 97.1 0.72 1.6E-05 58.8 32.3 24 546-569 636-659 (697)
50 PRK04778 septation ring format 97.1 1.1 2.5E-05 55.5 33.4 106 750-913 253-358 (569)
51 PF05911 DUF869: Plant protein 97.0 2.1 4.4E-05 55.4 39.5 509 861-1467 81-714 (769)
52 KOG0612 Rho-associated, coiled 96.8 3 6.5E-05 55.6 34.4 83 1035-1117 499-581 (1317)
53 KOG0996 Structural maintenance 96.7 4 8.7E-05 54.4 62.9 225 873-1142 779-1012(1293)
54 PF05622 HOOK: HOOK protein; 96.7 0.00038 8.3E-09 86.9 0.0 303 969-1330 311-633 (713)
55 PF09728 Taxilin: Myosin-like 96.7 0.85 1.8E-05 53.1 26.5 252 1047-1334 39-301 (309)
56 KOG0976 Rho/Rac1-interacting s 96.7 3.5 7.6E-05 53.0 47.4 134 576-720 25-158 (1265)
57 KOG0976 Rho/Rac1-interacting s 96.6 3.8 8.3E-05 52.6 46.1 392 969-1452 98-509 (1265)
58 KOG0964 Structural maintenance 96.6 4.5 9.8E-05 53.1 49.5 399 891-1308 256-772 (1200)
59 KOG0995 Centromere-associated 96.5 2.2 4.7E-05 53.2 28.7 255 987-1274 224-496 (581)
60 PF05010 TACC: Transforming ac 96.3 0.39 8.4E-06 53.3 19.9 86 1279-1371 99-196 (207)
61 PF10473 CENP-F_leu_zip: Leuci 96.3 0.046 9.9E-07 57.2 11.8 128 877-1011 8-139 (140)
62 KOG0995 Centromere-associated 96.2 1.4 3.1E-05 54.7 25.1 244 1186-1465 236-503 (581)
63 PF05622 HOOK: HOOK protein; 96.0 0.0034 7.4E-08 78.7 2.3 108 1000-1118 241-357 (713)
64 PRK11637 AmiB activator; Provi 95.8 0.68 1.5E-05 55.3 19.9 92 967-1058 44-135 (428)
65 PF15070 GOLGA2L5: Putative go 95.7 7.7 0.00017 49.4 29.1 133 887-1058 95-227 (617)
66 KOG0971 Microtubule-associated 95.6 12 0.00026 49.2 33.5 234 314-612 314-551 (1243)
67 PF00261 Tropomyosin: Tropomyo 95.5 0.92 2E-05 50.5 18.4 57 1188-1248 172-228 (237)
68 KOG0964 Structural maintenance 95.2 16 0.00035 48.4 58.1 78 672-775 659-738 (1200)
69 KOG0933 Structural maintenance 95.2 17 0.00036 48.4 56.4 283 999-1319 770-1082(1174)
70 PF05701 WEMBL: Weak chloropla 95.2 12 0.00026 46.6 43.8 107 1275-1391 342-448 (522)
71 KOG0977 Nuclear envelope prote 95.1 5.7 0.00012 49.8 25.1 293 985-1301 57-387 (546)
72 PF09726 Macoilin: Transmembra 95.1 1 2.3E-05 57.4 19.3 149 887-1065 419-577 (697)
73 KOG0996 Structural maintenance 95.0 21 0.00045 48.2 51.6 162 1224-1391 865-1032(1293)
74 PF14662 CCDC155: Coiled-coil 94.9 1.8 4E-05 47.8 18.0 176 1287-1466 11-191 (193)
75 PF05667 DUF812: Protein of un 94.8 5.2 0.00011 50.7 23.9 217 981-1204 325-590 (594)
76 KOG0946 ER-Golgi vesicle-tethe 94.8 5.1 0.00011 51.8 23.5 175 898-1105 791-966 (970)
77 PF14662 CCDC155: Coiled-coil 94.7 2.6 5.6E-05 46.7 18.4 186 995-1206 5-193 (193)
78 PRK09039 hypothetical protein; 94.5 1.2 2.6E-05 52.5 16.7 70 1177-1271 129-198 (343)
79 PF10473 CENP-F_leu_zip: Leuci 94.1 1.3 2.9E-05 46.7 14.3 133 1108-1280 4-136 (140)
80 PF09755 DUF2046: Uncharacteri 94.0 17 0.00036 43.1 26.5 252 1084-1370 25-288 (310)
81 TIGR03185 DNA_S_dndD DNA sulfu 94.0 9 0.0002 48.5 23.8 47 1041-1087 266-312 (650)
82 PF09787 Golgin_A5: Golgin sub 94.0 21 0.00046 44.3 26.5 203 1025-1241 213-430 (511)
83 PF05911 DUF869: Plant protein 93.5 34 0.00074 44.9 46.7 157 984-1140 589-759 (769)
84 KOG0962 DNA repair protein RAD 93.4 44 0.00096 45.9 62.0 120 1080-1202 632-764 (1294)
85 KOG0977 Nuclear envelope prote 93.0 33 0.00072 43.4 25.9 294 1116-1463 44-365 (546)
86 PF06160 EzrA: Septation ring 93.0 32 0.0007 43.3 37.9 439 534-1125 56-528 (560)
87 PRK11637 AmiB activator; Provi 93.0 11 0.00023 45.4 21.2 33 1030-1066 44-76 (428)
88 PF08317 Spc7: Spc7 kinetochor 92.9 2.3 5E-05 49.5 15.2 114 1340-1463 153-267 (325)
89 COG5185 HEC1 Protein involved 92.4 16 0.00035 45.2 21.2 90 982-1071 485-578 (622)
90 PF12718 Tropomyosin_1: Tropom 92.2 5.3 0.00011 42.1 15.3 139 1289-1468 5-143 (143)
91 KOG0971 Microtubule-associated 91.9 56 0.0012 43.5 73.2 89 1350-1457 962-1050(1243)
92 PF05667 DUF812: Protein of un 91.9 23 0.0005 45.1 22.8 202 980-1207 317-534 (594)
93 PF14915 CCDC144C: CCDC144C pr 91.7 34 0.00073 40.5 22.5 135 980-1132 133-267 (305)
94 cd08389 C2A_Synaptotagmin-14_1 90.6 0.63 1.4E-05 46.5 6.5 95 5-107 23-123 (124)
95 KOG0963 Transcription factor/C 90.6 62 0.0013 41.6 24.7 68 1142-1209 178-245 (629)
96 KOG0980 Actin-binding protein 90.2 74 0.0016 42.3 24.8 72 1094-1169 460-531 (980)
97 PF08614 ATG16: Autophagy prot 90.1 1.1 2.3E-05 48.7 8.1 116 1328-1456 66-181 (194)
98 PRK09039 hypothetical protein; 90.0 7.8 0.00017 45.9 15.6 123 1324-1459 69-192 (343)
99 PF09755 DUF2046: Uncharacteri 89.7 51 0.0011 39.3 23.7 174 994-1202 23-202 (310)
100 KOG4673 Transcription factor T 89.6 78 0.0017 41.2 37.2 363 992-1450 354-749 (961)
101 KOG0999 Microtubule-associated 89.4 12 0.00027 46.8 16.8 201 1185-1407 8-213 (772)
102 PF04849 HAP1_N: HAP1 N-termin 89.2 18 0.00039 42.8 17.4 74 990-1074 233-306 (306)
103 KOG0018 Structural maintenance 89.1 1E+02 0.0022 41.9 41.1 594 553-1318 143-897 (1141)
104 PF14915 CCDC144C: CCDC144C pr 88.9 58 0.0013 38.7 22.3 146 1246-1408 14-182 (305)
105 KOG0946 ER-Golgi vesicle-tethe 88.9 94 0.002 41.2 24.9 77 1041-1117 810-886 (970)
106 KOG0963 Transcription factor/C 88.8 83 0.0018 40.5 34.4 299 1034-1372 16-352 (629)
107 PF15619 Lebercilin: Ciliary p 88.8 26 0.00057 38.8 17.5 135 982-1149 45-185 (194)
108 COG1579 Zn-ribbon protein, pos 88.7 16 0.00034 41.9 16.0 60 874-933 12-71 (239)
109 PF10498 IFT57: Intra-flagella 88.5 4.9 0.00011 48.0 12.6 109 1096-1215 216-327 (359)
110 PF05483 SCP-1: Synaptonemal c 88.4 93 0.002 40.5 62.1 160 1092-1260 435-609 (786)
111 TIGR01005 eps_transp_fam exopo 88.2 28 0.0006 44.7 19.7 201 1040-1270 197-401 (754)
112 COG5185 HEC1 Protein involved 87.6 87 0.0019 39.3 22.3 115 544-706 492-607 (622)
113 smart00787 Spc7 Spc7 kinetocho 87.5 25 0.00054 41.6 17.2 140 1311-1465 124-264 (312)
114 KOG0994 Extracellular matrix g 87.5 1.3E+02 0.0029 41.3 40.6 53 544-601 1237-1289(1758)
115 PF06160 EzrA: Septation ring 87.4 93 0.002 39.4 33.9 321 1119-1457 92-431 (560)
116 PF04849 HAP1_N: HAP1 N-termin 87.4 29 0.00064 41.1 17.5 208 987-1245 86-304 (306)
117 PF14992 TMCO5: TMCO5 family 87.3 8.2 0.00018 45.0 13.0 178 863-1059 2-182 (280)
118 PF13851 GAS: Growth-arrest sp 87.2 17 0.00038 40.2 15.0 127 1027-1153 28-168 (201)
119 KOG1029 Endocytic adaptor prot 87.2 26 0.00055 45.7 17.8 97 585-704 485-585 (1118)
120 PF07798 DUF1640: Protein of u 87.1 27 0.00059 37.6 16.1 106 304-431 49-155 (177)
121 PF06705 SF-assemblin: SF-asse 86.9 60 0.0013 36.6 21.1 199 995-1216 9-228 (247)
122 cd04052 C2B_Tricalbin-like C2 86.4 1.3 2.9E-05 43.1 5.4 74 39-121 34-108 (111)
123 PF08317 Spc7: Spc7 kinetochor 86.2 15 0.00032 43.1 14.6 79 1330-1408 210-289 (325)
124 PF13514 AAA_27: AAA domain 86.1 1.5E+02 0.0032 40.4 67.3 424 971-1417 453-939 (1111)
125 TIGR03185 DNA_S_dndD DNA sulfu 86.0 1.1E+02 0.0025 39.0 32.6 66 1327-1392 396-463 (650)
126 COG1579 Zn-ribbon protein, pos 85.8 43 0.00092 38.6 17.4 126 972-1118 47-174 (239)
127 PF15070 GOLGA2L5: Putative go 85.8 1.2E+02 0.0026 39.2 41.8 278 293-616 16-309 (617)
128 TIGR01843 type_I_hlyD type I s 85.0 36 0.00077 39.7 16.9 62 1222-1287 128-189 (423)
129 PF09789 DUF2353: Uncharacteri 84.9 96 0.0021 37.2 24.9 267 331-670 13-298 (319)
130 PLN02939 transferase, transfer 84.9 63 0.0014 43.6 20.5 72 1098-1169 161-242 (977)
131 PF08614 ATG16: Autophagy prot 84.8 3.9 8.3E-05 44.4 8.5 99 292-414 74-179 (194)
132 TIGR03007 pepcterm_ChnLen poly 84.5 1.1E+02 0.0023 37.5 21.8 98 1176-1275 266-374 (498)
133 cd08682 C2_Rab11-FIP_classI C2 84.3 2.3 4.9E-05 42.2 6.0 91 26-120 28-126 (126)
134 PF04912 Dynamitin: Dynamitin 83.8 86 0.0019 37.7 19.7 60 1100-1159 209-281 (388)
135 PF15254 CCDC14: Coiled-coil d 83.6 54 0.0012 43.0 18.5 196 1149-1371 340-543 (861)
136 PF10481 CENP-F_N: Cenp-F N-te 83.5 16 0.00034 42.8 12.7 115 999-1124 19-133 (307)
137 PRK04863 mukB cell division pr 82.9 2.4E+02 0.0051 40.2 65.0 302 912-1257 784-1107(1486)
138 cd04043 C2_Munc13_fungal C2 do 82.7 5.5 0.00012 39.1 7.9 109 5-125 8-124 (126)
139 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.6 23 0.00051 36.5 12.6 30 1351-1380 99-128 (132)
140 PF06818 Fez1: Fez1; InterPro 82.5 33 0.00071 38.7 14.4 98 1237-1348 9-106 (202)
141 PRK04863 mukB cell division pr 82.1 2.5E+02 0.0054 39.9 72.5 410 985-1465 639-1106(1486)
142 cd08391 C2A_C2C_Synaptotagmin_ 81.3 3.8 8.1E-05 39.6 6.1 83 27-120 37-120 (121)
143 PF09789 DUF2353: Uncharacteri 81.0 38 0.00083 40.4 15.0 147 1007-1164 11-158 (319)
144 KOG0982 Centrosomal protein Nu 80.7 1.3E+02 0.0028 37.5 19.3 128 1147-1304 267-394 (502)
145 PF12325 TMF_TATA_bd: TATA ele 80.6 23 0.0005 36.8 11.7 60 293-359 17-76 (120)
146 cd08388 C2A_Synaptotagmin-4-11 80.3 3.3 7.1E-05 41.7 5.5 61 47-107 64-127 (128)
147 TIGR02680 conserved hypothetic 80.1 2.2E+02 0.0048 39.9 23.7 37 981-1017 746-782 (1353)
148 cd08373 C2A_Ferlin C2 domain f 78.6 5.4 0.00012 39.5 6.4 61 67-128 57-122 (127)
149 KOG1853 LIS1-interacting prote 78.3 1.1E+02 0.0024 35.8 16.9 113 1029-1148 37-153 (333)
150 TIGR03007 pepcterm_ChnLen poly 78.3 1.4E+02 0.003 36.6 19.1 69 1215-1286 202-281 (498)
151 COG4942 Membrane-bound metallo 78.1 1.5E+02 0.0032 36.9 19.0 43 1245-1287 199-241 (420)
152 PLN03229 acetyl-coenzyme A car 78.0 1.3E+02 0.0029 39.6 19.3 254 396-704 439-710 (762)
153 COG3883 Uncharacterized protei 77.9 40 0.00086 39.4 13.6 144 664-826 41-192 (265)
154 PF14992 TMCO5: TMCO5 family 77.5 37 0.00081 39.9 13.3 168 394-611 5-175 (280)
155 PF13851 GAS: Growth-arrest sp 77.3 1.2E+02 0.0027 33.8 16.8 114 1163-1281 5-118 (201)
156 PF15294 Leu_zip: Leucine zipp 77.3 78 0.0017 37.3 15.7 153 964-1146 60-226 (278)
157 PF14197 Cep57_CLD_2: Centroso 75.6 7.4 0.00016 36.9 5.9 64 981-1044 2-65 (69)
158 PLN02939 transferase, transfer 74.8 1.1E+02 0.0024 41.5 17.9 229 1174-1450 145-400 (977)
159 PF15619 Lebercilin: Ciliary p 74.7 1.5E+02 0.0032 33.2 22.2 93 331-433 16-108 (194)
160 PF03148 Tektin: Tektin family 74.0 2.1E+02 0.0046 34.7 24.5 307 876-1258 43-365 (384)
161 KOG0980 Actin-binding protein 73.8 3.3E+02 0.0072 36.8 24.2 122 990-1135 332-459 (980)
162 PF13870 DUF4201: Domain of un 73.5 1.4E+02 0.003 32.2 16.2 125 989-1117 47-176 (177)
163 PF04156 IncA: IncA protein; 73.3 1.3E+02 0.0028 32.3 15.3 41 1320-1363 82-122 (191)
164 PF09304 Cortex-I_coil: Cortex 72.4 44 0.00095 34.5 10.8 36 1066-1101 38-73 (107)
165 PF13870 DUF4201: Domain of un 72.3 1.1E+02 0.0023 33.0 14.4 76 495-571 5-81 (177)
166 PF09787 Golgin_A5: Golgin sub 72.3 2.7E+02 0.0058 35.1 26.0 106 1217-1323 274-380 (511)
167 PF14197 Cep57_CLD_2: Centroso 70.0 41 0.00088 32.0 9.4 61 291-358 4-64 (69)
168 KOG0972 Huntingtin interacting 69.8 48 0.001 39.3 11.7 140 1093-1244 220-362 (384)
169 cd08685 C2_RGS-like C2 domain 69.6 7.2 0.00016 39.0 4.8 83 5-95 19-109 (119)
170 PF04111 APG6: Autophagy prote 69.5 50 0.0011 39.0 12.1 73 1298-1374 9-81 (314)
171 cd04033 C2_NEDD4_NEDD4L C2 dom 69.3 12 0.00025 37.2 6.1 55 68-122 68-133 (133)
172 cd04014 C2_PKC_epsilon C2 doma 69.1 9.6 0.00021 38.1 5.5 55 66-123 73-130 (132)
173 PF14988 DUF4515: Domain of un 68.9 1.2E+02 0.0026 34.1 14.3 121 985-1116 48-186 (206)
174 PF04156 IncA: IncA protein; 68.8 1.6E+02 0.0035 31.6 14.9 63 292-354 88-150 (191)
175 PF07926 TPR_MLP1_2: TPR/MLP1/ 68.4 1.5E+02 0.0033 30.7 15.0 71 1212-1282 54-124 (132)
176 cd04051 C2_SRC2_like C2 domain 67.9 9.7 0.00021 37.5 5.2 73 40-116 44-124 (125)
177 PF04111 APG6: Autophagy prote 67.4 26 0.00056 41.3 9.3 90 967-1074 47-136 (314)
178 smart00787 Spc7 Spc7 kinetocho 67.3 2.7E+02 0.006 33.2 17.5 29 902-930 65-93 (312)
179 PF09738 DUF2051: Double stran 67.0 1.9E+02 0.0042 34.5 16.1 139 293-431 99-250 (302)
180 cd08680 C2_Kibra C2 domain fou 66.5 8 0.00017 39.4 4.4 74 17-97 39-115 (124)
181 PF04012 PspA_IM30: PspA/IM30 66.4 2.1E+02 0.0046 31.6 16.6 121 1127-1251 4-125 (221)
182 KOG0243 Kinesin-like protein [ 66.2 5E+02 0.011 35.8 40.6 168 995-1172 719-899 (1041)
183 PF10186 Atg14: UV radiation r 66.2 2.3E+02 0.0049 31.9 15.9 79 1081-1160 65-143 (302)
184 KOG0979 Structural maintenance 66.0 2.1E+02 0.0045 39.0 17.3 148 1279-1459 211-358 (1072)
185 PF15294 Leu_zip: Leucine zipp 65.7 2E+02 0.0043 34.2 15.6 35 587-621 140-174 (278)
186 cd08376 C2B_MCTP_PRT C2 domain 65.2 14 0.0003 35.9 5.6 51 67-120 61-113 (116)
187 cd04044 C2A_Tricalbin-like C2 65.2 12 0.00025 36.4 5.1 75 38-122 45-123 (124)
188 PF12718 Tropomyosin_1: Tropom 64.7 61 0.0013 34.4 10.5 70 971-1040 15-87 (143)
189 TIGR02977 phageshock_pspA phag 64.4 1.5E+02 0.0032 33.2 14.0 151 897-1071 42-214 (219)
190 KOG4302 Microtubule-associated 64.2 4.6E+02 0.0099 34.6 21.7 168 1165-1355 104-273 (660)
191 COG3883 Uncharacterized protei 63.7 2.2E+02 0.0048 33.6 15.4 104 1287-1392 94-197 (265)
192 PRK10361 DNA recombination pro 63.4 3.4E+02 0.0073 34.5 17.8 139 1084-1225 58-222 (475)
193 PF14817 HAUS5: HAUS augmin-li 63.3 1.1E+02 0.0025 39.6 14.3 133 282-414 301-438 (632)
194 cd04022 C2A_MCTP_PRT_plant C2 62.8 17 0.00036 36.2 5.8 54 67-121 64-125 (127)
195 PRK10884 SH3 domain-containing 62.7 53 0.0011 36.9 10.1 73 282-354 90-166 (206)
196 KOG4593 Mitotic checkpoint pro 62.7 4.9E+02 0.011 34.5 40.7 431 985-1453 49-523 (716)
197 TIGR01005 eps_transp_fam exopo 62.4 1.8E+02 0.0039 37.7 16.1 32 1256-1287 237-268 (754)
198 cd04015 C2_plant_PLD C2 domain 62.4 17 0.00038 38.2 6.1 52 69-121 100-157 (158)
199 PF09304 Cortex-I_coil: Cortex 61.5 68 0.0015 33.2 9.7 95 1050-1151 8-102 (107)
200 cd08392 C2A_SLP-3 C2 domain fi 60.6 12 0.00026 38.1 4.4 69 18-94 42-113 (128)
201 PF10267 Tmemb_cc2: Predicted 60.6 3.6E+02 0.0077 33.5 17.1 70 285-357 212-285 (395)
202 PF06818 Fez1: Fez1; InterPro 60.0 71 0.0015 36.1 10.4 109 287-404 68-192 (202)
203 TIGR02894 DNA_bind_RsfA transc 59.9 25 0.00055 38.4 6.8 45 1420-1464 98-142 (161)
204 cd08690 C2_Freud-1 C2 domain f 59.6 39 0.00084 36.2 8.1 114 8-128 14-143 (155)
205 cd04042 C2A_MCTP_PRT C2 domain 59.5 25 0.00053 34.7 6.3 84 27-121 31-119 (121)
206 PRK10361 DNA recombination pro 59.2 3.4E+02 0.0074 34.4 16.9 128 1220-1354 77-204 (475)
207 KOG4807 F-actin binding protei 59.0 4.5E+02 0.0097 32.8 19.0 234 1030-1330 295-537 (593)
208 KOG1029 Endocytic adaptor prot 58.0 6.2E+02 0.013 34.2 21.4 147 1293-1440 388-545 (1118)
209 PF08826 DMPK_coil: DMPK coile 57.9 33 0.00072 32.2 6.3 53 1407-1466 6-58 (61)
210 cd04020 C2B_SLP_1-2-3-4 C2 dom 57.7 18 0.00039 38.3 5.3 85 5-95 34-126 (162)
211 PF07106 TBPIP: Tat binding pr 57.5 41 0.00088 35.8 7.9 68 285-357 72-139 (169)
212 cd04029 C2A_SLP-4_5 C2 domain 57.5 16 0.00035 36.7 4.7 81 17-107 41-125 (125)
213 PRK10884 SH3 domain-containing 56.6 56 0.0012 36.7 9.0 30 1091-1120 137-166 (206)
214 PF15290 Syntaphilin: Golgi-lo 56.3 1.7E+02 0.0036 34.9 12.8 69 287-358 63-141 (305)
215 cd04019 C2C_MCTP_PRT_plant C2 56.3 33 0.00071 36.1 6.8 89 26-123 29-133 (150)
216 PF15066 CAGE1: Cancer-associa 55.5 5.4E+02 0.012 32.8 21.6 212 883-1201 314-526 (527)
217 KOG0972 Huntingtin interacting 55.5 1.7E+02 0.0036 35.1 12.7 132 486-665 216-356 (384)
218 cd08681 C2_fungal_Inn1p-like C 55.4 27 0.00058 34.0 5.7 70 42-120 46-117 (118)
219 PRK11281 hypothetical protein; 54.7 7.9E+02 0.017 34.4 25.6 250 1129-1459 61-332 (1113)
220 cd08393 C2A_SLP-1_2 C2 domain 54.5 29 0.00064 34.8 6.0 82 17-106 41-124 (125)
221 cd08375 C2_Intersectin C2 doma 54.5 33 0.00072 35.3 6.4 84 26-119 44-133 (136)
222 TIGR01843 type_I_hlyD type I s 54.3 4.2E+02 0.0092 31.1 18.3 27 1438-1464 244-270 (423)
223 PF12325 TMF_TATA_bd: TATA ele 54.2 68 0.0015 33.5 8.5 85 1294-1381 19-117 (120)
224 TIGR03017 EpsF chain length de 54.0 4.7E+02 0.01 31.6 17.1 62 1176-1240 273-334 (444)
225 KOG0249 LAR-interacting protei 53.7 2E+02 0.0043 38.0 13.9 237 996-1278 26-269 (916)
226 PF10224 DUF2205: Predicted co 53.6 29 0.00062 34.1 5.4 57 1039-1095 18-74 (80)
227 PF10481 CENP-F_N: Cenp-F N-te 53.4 1.5E+02 0.0033 35.1 11.8 59 1328-1386 17-82 (307)
228 PF05010 TACC: Transforming ac 53.2 3.9E+02 0.0085 30.4 18.6 112 986-1115 71-187 (207)
229 PF04912 Dynamitin: Dynamitin 53.2 4.9E+02 0.011 31.6 19.5 30 984-1013 322-351 (388)
230 cd08401 C2A_RasA2_RasA3 C2 dom 53.0 21 0.00046 35.8 4.6 52 67-120 62-120 (121)
231 PF09738 DUF2051: Double stran 52.7 4.8E+02 0.01 31.3 18.5 174 293-529 78-252 (302)
232 COG4942 Membrane-bound metallo 52.7 5.7E+02 0.012 32.1 19.5 25 1186-1210 232-256 (420)
233 cd08382 C2_Smurf-like C2 domai 52.5 18 0.0004 36.0 4.1 69 27-106 31-103 (123)
234 PF15290 Syntaphilin: Golgi-lo 52.4 21 0.00045 41.9 5.0 37 690-726 69-105 (305)
235 cd04024 C2A_Synaptotagmin-like 52.4 23 0.0005 34.7 4.8 75 26-109 32-110 (128)
236 PF10186 Atg14: UV radiation r 52.4 3.4E+02 0.0074 30.5 14.4 76 1070-1145 32-108 (302)
237 PF15397 DUF4618: Domain of un 52.3 4.6E+02 0.01 31.0 23.0 129 592-771 5-134 (258)
238 cd04040 C2D_Tricalbin-like C2 52.2 25 0.00054 34.0 4.9 43 67-110 61-105 (115)
239 PF10211 Ax_dynein_light: Axon 52.2 2E+02 0.0042 32.0 12.1 101 294-404 86-188 (189)
240 cd08521 C2A_SLP C2 domain firs 51.7 26 0.00057 34.1 5.0 82 5-94 21-112 (123)
241 KOG4302 Microtubule-associated 49.8 7.6E+02 0.016 32.7 19.1 205 968-1212 52-274 (660)
242 PF11559 ADIP: Afadin- and alp 49.8 84 0.0018 32.9 8.6 94 957-1057 46-143 (151)
243 PF05384 DegS: Sensor protein 49.7 3.8E+02 0.0083 29.4 13.6 119 1080-1206 21-154 (159)
244 cd04036 C2_cPLA2 C2 domain pre 49.7 34 0.00075 33.6 5.5 50 68-119 65-115 (119)
245 PF11559 ADIP: Afadin- and alp 49.3 3.4E+02 0.0073 28.5 14.1 116 1083-1202 35-150 (151)
246 PF10498 IFT57: Intra-flagella 49.2 5.8E+02 0.013 31.2 16.8 137 486-665 209-349 (359)
247 PF10212 TTKRSYEDQ: Predicted 49.1 1.8E+02 0.0039 37.0 12.4 77 1316-1392 417-501 (518)
248 TIGR03017 EpsF chain length de 49.1 5.5E+02 0.012 31.0 18.1 39 1106-1144 260-298 (444)
249 KOG3215 Uncharacterized conser 49.0 1.3E+02 0.0029 34.3 10.2 96 1030-1138 96-195 (222)
250 KOG1899 LAR transmembrane tyro 48.3 2.7E+02 0.0058 36.4 13.6 83 489-605 118-200 (861)
251 PF00769 ERM: Ezrin/radixin/mo 48.0 1.3E+02 0.0027 34.6 10.3 110 1002-1122 9-118 (246)
252 PRK04778 septation ring format 47.9 7.1E+02 0.015 31.8 46.4 77 672-776 83-159 (569)
253 COG4026 Uncharacterized protei 47.9 58 0.0013 37.5 7.4 52 1048-1099 132-183 (290)
254 smart00338 BRLZ basic region l 47.3 22 0.00048 32.4 3.5 36 979-1014 28-63 (65)
255 PF07111 HCR: Alpha helical co 47.3 8.5E+02 0.018 32.6 42.9 231 899-1172 161-399 (739)
256 PRK15422 septal ring assembly 47.0 73 0.0016 31.5 6.9 67 869-935 8-74 (79)
257 cd04031 C2A_RIM1alpha C2 domai 46.9 34 0.00075 33.4 5.0 29 64-92 82-112 (125)
258 KOG4360 Uncharacterized coiled 46.8 1.7E+02 0.0037 37.3 11.5 98 1041-1138 194-299 (596)
259 KOG0249 LAR-interacting protei 45.3 4.5E+02 0.0097 35.0 15.0 193 1086-1297 49-243 (916)
260 cd08379 C2D_MCTP_PRT_plant C2 44.4 44 0.00095 34.5 5.5 30 79-109 83-112 (126)
261 PF07106 TBPIP: Tat binding pr 44.3 64 0.0014 34.4 6.9 58 1400-1460 77-136 (169)
262 KOG0804 Cytoplasmic Zn-finger 43.9 1.3E+02 0.0029 37.6 10.1 81 974-1078 329-409 (493)
263 KOG3156 Uncharacterized membra 43.2 1.7E+02 0.0037 33.6 10.0 55 311-371 99-153 (220)
264 cd08387 C2A_Synaptotagmin-8 C2 43.2 32 0.00069 34.0 4.2 45 62-107 77-123 (124)
265 PF11932 DUF3450: Protein of u 42.1 5.7E+02 0.012 29.1 14.9 92 1027-1118 25-116 (251)
266 cd08678 C2_C21orf25-like C2 do 41.9 72 0.0016 31.8 6.4 57 68-125 60-123 (126)
267 cd04026 C2_PKC_alpha_gamma C2 41.8 61 0.0013 32.3 5.9 103 5-117 20-130 (131)
268 KOG4348 Adaptor protein CMS/SE 41.7 7.2E+02 0.016 31.6 15.4 49 292-340 569-621 (627)
269 PF10212 TTKRSYEDQ: Predicted 41.4 1.3E+02 0.0028 38.3 9.6 99 969-1074 419-517 (518)
270 COG2433 Uncharacterized conser 41.1 1.4E+02 0.003 38.7 9.9 46 1316-1364 419-464 (652)
271 PF07989 Microtub_assoc: Micro 40.9 1.5E+02 0.0034 28.7 8.1 34 980-1013 3-36 (75)
272 TIGR01010 BexC_CtrB_KpsE polys 40.8 5.7E+02 0.012 30.4 14.4 123 1041-1203 174-296 (362)
273 COG1340 Uncharacterized archae 40.6 7.3E+02 0.016 29.9 25.2 162 974-1150 59-243 (294)
274 PLN03188 kinesin-12 family pro 40.2 2.4E+02 0.0053 39.3 12.3 120 295-419 1068-1202(1320)
275 PF11932 DUF3450: Protein of u 40.1 3.1E+02 0.0067 31.2 11.7 64 297-360 40-103 (251)
276 cd08381 C2B_PI3K_class_II C2 d 39.8 56 0.0012 32.8 5.3 60 46-106 60-121 (122)
277 PF06008 Laminin_I: Laminin Do 39.1 6.4E+02 0.014 28.8 20.8 77 1048-1128 91-167 (264)
278 cd08400 C2_Ras_p21A1 C2 domain 39.0 1.2E+02 0.0027 30.5 7.6 53 69-122 64-123 (126)
279 PF09602 PhaP_Bmeg: Polyhydrox 38.9 1.4E+02 0.0031 33.0 8.4 53 1155-1207 10-70 (165)
280 KOG0982 Centrosomal protein Nu 38.7 9.3E+02 0.02 30.6 23.1 165 979-1165 299-476 (502)
281 cd04030 C2C_KIAA1228 C2 domain 38.2 58 0.0013 32.1 5.1 43 63-106 80-126 (127)
282 KOG1003 Actin filament-coating 38.1 6.8E+02 0.015 28.8 15.5 130 909-1047 41-186 (205)
283 TIGR01000 bacteriocin_acc bact 37.9 8.6E+02 0.019 30.0 17.5 41 1029-1069 150-190 (457)
284 PF10146 zf-C4H2: Zinc finger- 37.9 2.4E+02 0.0051 32.5 10.3 45 882-926 7-51 (230)
285 PF04375 HemX: HemX; InterPro 37.5 1.2E+02 0.0026 36.5 8.4 33 1257-1289 278-310 (372)
286 cd08691 C2_NEDL1-like C2 domai 37.2 81 0.0018 32.9 6.2 94 3-107 6-120 (137)
287 KOG1962 B-cell receptor-associ 37.2 2.3E+02 0.005 32.6 10.0 67 1188-1262 130-196 (216)
288 KOG1853 LIS1-interacting prote 37.0 8E+02 0.017 29.3 16.3 130 985-1138 28-157 (333)
289 KOG0999 Microtubule-associated 36.9 1.1E+03 0.024 30.9 44.6 122 288-433 4-126 (772)
290 KOG1655 Protein involved in va 36.8 1.8E+02 0.0039 33.1 8.9 144 1186-1384 34-178 (218)
291 cd08675 C2B_RasGAP C2 domain s 35.2 61 0.0013 33.4 4.9 69 40-109 44-121 (137)
292 smart00502 BBC B-Box C-termina 35.2 4.3E+02 0.0092 25.6 10.9 23 1093-1115 7-29 (127)
293 PF12709 Kinetocho_Slk19: Cent 35.0 1.8E+02 0.004 29.3 7.7 74 1244-1333 3-77 (87)
294 cd08386 C2A_Synaptotagmin-7 C2 34.9 60 0.0013 31.9 4.6 42 64-106 80-123 (125)
295 KOG4809 Rab6 GTPase-interactin 34.4 1.2E+03 0.026 30.6 20.2 140 476-620 312-458 (654)
296 cd04035 C2A_Rabphilin_Doc2 C2 34.4 60 0.0013 32.0 4.5 31 66-96 83-114 (123)
297 cd04025 C2B_RasA1_RasA4 C2 dom 34.3 85 0.0018 31.0 5.5 71 27-107 30-102 (123)
298 KOG2129 Uncharacterized conser 34.0 1.1E+03 0.024 30.0 21.8 168 490-719 144-315 (552)
299 PF02403 Seryl_tRNA_N: Seryl-t 33.8 2.2E+02 0.0047 28.2 8.2 67 1327-1393 27-96 (108)
300 cd04054 C2A_Rasal1_RasA4 C2 do 33.8 80 0.0017 31.4 5.3 52 67-119 61-119 (121)
301 TIGR01000 bacteriocin_acc bact 33.7 1E+03 0.022 29.5 19.4 29 1225-1253 91-119 (457)
302 smart00340 HALZ homeobox assoc 33.6 45 0.00097 29.7 3.0 32 1066-1104 6-37 (44)
303 PF01166 TSC22: TSC-22/dip/bun 33.5 39 0.00085 31.7 2.8 27 586-612 14-40 (59)
304 PF03980 Nnf1: Nnf1 ; InterPr 33.1 5.1E+02 0.011 25.9 11.5 101 315-419 4-106 (109)
305 TIGR01010 BexC_CtrB_KpsE polys 33.1 6.5E+02 0.014 29.9 13.4 59 1071-1129 138-199 (362)
306 KOG0239 Kinesin (KAR3 subfamil 33.0 1.3E+03 0.028 30.6 18.1 53 1150-1206 266-321 (670)
307 PF15254 CCDC14: Coiled-coil d 33.0 9.2E+02 0.02 32.6 15.2 53 984-1036 387-444 (861)
308 PF06005 DUF904: Protein of un 32.8 1.8E+02 0.0038 28.2 7.1 52 1332-1383 14-65 (72)
309 cd08390 C2A_Synaptotagmin-15-1 32.8 71 0.0015 31.3 4.7 43 64-107 78-122 (123)
310 KOG0239 Kinesin (KAR3 subfamil 32.6 9.3E+02 0.02 31.9 15.5 34 1328-1361 174-207 (670)
311 PF07989 Microtub_assoc: Micro 32.0 2.2E+02 0.0048 27.7 7.6 60 545-608 6-65 (75)
312 PRK11519 tyrosine kinase; Prov 31.7 5.7E+02 0.012 33.5 13.5 51 1317-1374 351-401 (719)
313 cd04038 C2_ArfGAP C2 domain pr 31.2 59 0.0013 34.2 4.1 77 26-116 30-108 (145)
314 PF00170 bZIP_1: bZIP transcri 31.2 58 0.0013 29.7 3.5 35 980-1014 29-63 (64)
315 PF05266 DUF724: Protein of un 30.9 4.3E+02 0.0094 29.6 10.7 69 290-358 115-183 (190)
316 PF03962 Mnd1: Mnd1 family; I 30.8 4.3E+02 0.0094 29.4 10.7 14 376-390 133-146 (188)
317 cd04021 C2_E3_ubiquitin_ligase 30.8 87 0.0019 31.5 5.1 43 68-110 62-110 (125)
318 KOG1962 B-cell receptor-associ 30.7 2.2E+02 0.0049 32.7 8.6 95 294-403 116-210 (216)
319 COG3074 Uncharacterized protei 30.0 4.1E+02 0.009 26.2 8.8 34 329-362 34-67 (79)
320 cd04010 C2B_RasA3 C2 domain se 29.8 1.2E+02 0.0026 32.1 6.1 101 5-106 7-120 (148)
321 PF14931 IFT20: Intraflagellar 29.7 6.8E+02 0.015 26.4 11.2 99 1069-1199 10-108 (120)
322 COG2433 Uncharacterized conser 29.7 5.2E+02 0.011 33.9 12.2 101 288-390 425-542 (652)
323 PF09311 Rab5-bind: Rabaptin-l 29.6 88 0.0019 34.1 5.2 153 1196-1353 12-175 (181)
324 COG2900 SlyX Uncharacterized p 29.3 68 0.0015 31.2 3.7 50 967-1016 5-54 (72)
325 PRK09841 cryptic autophosphory 29.2 8.2E+02 0.018 32.2 14.4 67 1033-1099 256-324 (726)
326 cd00275 C2_PLC_like C2 domain 29.1 2.1E+02 0.0045 28.0 7.2 90 19-121 31-127 (128)
327 PF04799 Fzo_mitofusin: fzo-li 28.3 69 0.0015 35.4 4.1 46 646-691 122-167 (171)
328 KOG0933 Structural maintenance 28.1 1.9E+03 0.04 30.9 52.8 293 910-1271 680-980 (1174)
329 PF07200 Mod_r: Modifier of ru 27.9 4.5E+02 0.0097 27.5 9.7 96 1292-1392 15-110 (150)
330 TIGR00634 recN DNA repair prot 27.8 1.4E+03 0.03 29.2 18.3 45 1315-1359 325-369 (563)
331 PF15035 Rootletin: Ciliary ro 27.5 7.8E+02 0.017 27.5 11.9 136 985-1140 17-160 (182)
332 PF07334 IFP_35_N: Interferon- 27.3 74 0.0016 31.2 3.6 27 1429-1455 3-29 (76)
333 PRK10476 multidrug resistance 26.9 6.2E+02 0.013 29.7 11.7 30 1258-1287 116-145 (346)
334 cd04041 C2A_fungal C2 domain f 26.9 1.1E+02 0.0024 29.9 4.9 84 5-96 8-100 (111)
335 PF04645 DUF603: Protein of un 26.7 1.7E+02 0.0037 32.7 6.6 53 300-354 106-158 (181)
336 PF00769 ERM: Ezrin/radixin/mo 26.6 1E+03 0.023 27.5 15.0 180 1036-1219 4-216 (246)
337 PRK11519 tyrosine kinase; Prov 26.2 1E+03 0.022 31.3 14.4 56 1032-1087 255-312 (719)
338 KOG1937 Uncharacterized conser 26.0 1.5E+03 0.033 29.1 16.8 188 336-596 226-427 (521)
339 PRK10698 phage shock protein P 25.5 1E+03 0.023 27.1 13.8 34 1088-1121 101-134 (222)
340 TIGR02231 conserved hypothetic 25.2 1.3E+02 0.0028 37.5 6.2 48 1278-1332 125-172 (525)
341 PRK10920 putative uroporphyrin 25.2 2.3E+02 0.005 34.9 8.1 90 991-1082 60-154 (390)
342 PF01920 Prefoldin_2: Prefoldi 25.1 3.3E+02 0.0071 26.3 7.7 85 902-1013 7-91 (106)
343 PF04102 SlyX: SlyX; InterPro 24.9 92 0.002 29.3 3.8 48 968-1015 2-49 (69)
344 COG1730 GIM5 Predicted prefold 24.8 78 0.0017 34.1 3.7 129 879-1012 6-136 (145)
345 PF06005 DUF904: Protein of un 24.8 3.6E+02 0.0077 26.2 7.6 45 1076-1120 8-52 (72)
346 PF14988 DUF4515: Domain of un 24.8 1.1E+03 0.023 26.9 17.1 109 1336-1463 85-193 (206)
347 TIGR02449 conserved hypothetic 24.7 2.2E+02 0.0048 27.3 6.1 55 1077-1131 5-59 (65)
348 PF02050 FliJ: Flagellar FliJ 24.6 5.8E+02 0.013 24.3 9.2 72 995-1070 16-92 (123)
349 PF07558 Shugoshin_N: Shugoshi 24.5 44 0.00095 29.6 1.5 30 583-612 11-40 (46)
350 PF07334 IFP_35_N: Interferon- 24.2 74 0.0016 31.3 3.0 28 986-1013 2-29 (76)
351 cd04037 C2E_Ferlin C2 domain f 24.1 85 0.0018 31.5 3.6 70 39-117 43-114 (124)
352 cd00632 Prefoldin_beta Prefold 24.0 2.9E+02 0.0062 27.6 7.2 11 916-926 15-25 (105)
353 cd08406 C2B_Synaptotagmin-12 C 23.9 1.4E+02 0.003 31.0 5.2 79 5-91 22-109 (136)
354 PF10146 zf-C4H2: Zinc finger- 23.9 3.5E+02 0.0076 31.2 8.7 50 968-1021 6-55 (230)
355 PF10168 Nup88: Nuclear pore c 23.9 1.7E+03 0.038 29.7 15.8 83 282-364 533-616 (717)
356 PF15358 TSKS: Testis-specific 23.6 1.4E+02 0.003 37.0 5.7 41 1086-1138 146-191 (558)
357 TIGR00634 recN DNA repair prot 23.2 1.6E+03 0.035 28.6 18.3 30 1225-1254 347-376 (563)
358 PF10211 Ax_dynein_light: Axon 22.9 4.7E+02 0.01 29.1 9.2 21 337-357 166-186 (189)
359 PF09311 Rab5-bind: Rabaptin-l 22.1 88 0.0019 34.1 3.5 140 978-1117 9-155 (181)
360 PLN03008 Phospholipase D delta 22.0 1.6E+02 0.0035 39.5 6.3 58 68-127 118-182 (868)
361 COG1842 PspA Phage shock prote 22.0 1.3E+03 0.027 26.8 13.6 92 887-1008 32-123 (225)
362 PRK00888 ftsB cell division pr 21.9 1.6E+02 0.0035 29.9 5.1 39 1422-1460 30-68 (105)
363 PF13874 Nup54: Nucleoporin co 21.7 1.9E+02 0.0042 30.4 5.8 62 1036-1097 64-125 (141)
364 cd00632 Prefoldin_beta Prefold 21.6 8.2E+02 0.018 24.4 9.9 95 1359-1465 8-102 (105)
365 TIGR02231 conserved hypothetic 21.5 4.7E+02 0.01 32.8 9.9 93 980-1072 74-173 (525)
366 PF14775 NYD-SP28_assoc: Sperm 21.4 3.8E+02 0.0083 25.1 6.9 56 304-359 3-58 (60)
367 PF04645 DUF603: Protein of un 21.1 3.9E+02 0.0085 30.0 8.0 103 1052-1161 35-153 (181)
368 PF03962 Mnd1: Mnd1 family; I 21.0 6.8E+02 0.015 27.9 10.0 118 1155-1284 36-163 (188)
369 PF07200 Mod_r: Modifier of ru 21.0 3.2E+02 0.007 28.5 7.2 23 982-1004 32-54 (150)
370 PRK09841 cryptic autophosphory 20.9 8.2E+02 0.018 32.2 12.2 53 1315-1374 349-401 (726)
371 PF05082 Rop-like: Rop-like; 20.8 4E+02 0.0086 25.8 7.0 62 292-353 2-63 (66)
372 cd04049 C2_putative_Elicitor-r 20.7 1.3E+02 0.0028 29.7 4.1 65 40-110 44-110 (124)
373 cd04048 C2A_Copine C2 domain f 20.6 2.4E+02 0.0052 27.9 5.9 29 77-106 84-112 (120)
374 KOG4593 Mitotic checkpoint pro 20.4 2.2E+03 0.048 29.0 49.9 51 990-1040 150-200 (716)
375 PRK14127 cell division protein 20.3 2.8E+02 0.006 28.9 6.3 66 1071-1136 21-100 (109)
376 cd08378 C2B_MCTP_PRT_plant C2 20.2 2.8E+02 0.006 28.0 6.3 57 65-121 55-119 (121)
377 PF15188 CCDC-167: Coiled-coil 20.2 2.7E+02 0.0058 28.0 5.9 61 547-609 6-66 (85)
378 PF10168 Nup88: Nuclear pore c 20.2 5.1E+02 0.011 34.3 10.2 64 1104-1167 590-653 (717)
379 PF12795 MscS_porin: Mechanose 20.1 1.3E+03 0.028 26.2 13.0 118 1331-1453 87-205 (240)
380 PRK02793 phi X174 lysis protei 20.0 1.3E+02 0.0029 28.7 3.8 45 968-1012 6-50 (72)
381 PF06008 Laminin_I: Laminin Do 20.0 1.3E+03 0.029 26.3 22.3 145 986-1138 89-237 (264)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.84 E-value=2.4e-12 Score=168.34 Aligned_cols=491 Identities=23% Similarity=0.290 Sum_probs=313.7
Q ss_pred cccccchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHH--------hhccch
Q 041227 869 EFKSDVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIML--------REGTVA 940 (1468)
Q Consensus 869 e~e~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~--------~e~~i~ 940 (1468)
+.+..+..+.+....-.+.|+.+ ..+.+.-.+.+..|.+.+..++.++.+|-+.++--. +=+...
T Consensus 1284 e~e~~~~~~~r~~~~~~~qle~~-------k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~ 1356 (1930)
T KOG0161|consen 1284 EAEAKLSALSRDKQALESQLEEL-------KRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKAN 1356 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444 344555556667777777777777776655553221 111111
Q ss_pred hhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhh
Q 041227 941 SKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLE 1020 (1468)
Q Consensus 941 skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~ 1020 (1468)
+.|..+.+. .. --+.+...+++-.|..+...+.+++.....+.-.+..||.-...|..|-+...+.
T Consensus 1357 ~e~~~~~~k----~e----------~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d 1422 (1930)
T KOG0161|consen 1357 AELAQWKKK----FE----------EEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLD 1422 (1930)
T ss_pred HHHHHHHHH----HH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 121111111 11 1122334677888888888888888888888888888888888899999999999
Q ss_pred hccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhh-------hhhHHHHhhhHHH
Q 041227 1021 LENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQAT-------AEGLIEECSLLQK 1093 (1468)
Q Consensus 1021 l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT-------~e~lieec~slQ~ 1093 (1468)
++..++.+..|..++.+.. ....+.|++..+++-....+|.+..-+.....+|+-+ .+.+-.+-+.|+.
T Consensus 1423 ~~~~~~~~~~le~k~k~f~----k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ 1498 (1930)
T KOG0161|consen 1423 LERSRAAVAALEKKQKRFE----KLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQ 1498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888654 4455666666666666666666655555555555444 4455556677777
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHH
Q 041227 1094 SNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEE 1173 (1468)
Q Consensus 1094 ~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~ 1173 (1468)
...+|..++.++...+..||.-++-+...-.+.-.+++.+|+.+. ..++... .+..++ +.-|+...+
T Consensus 1499 ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le-~eE~~~l---r~~~~~---------~~~r~e~er 1565 (1930)
T KOG0161|consen 1499 EIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALE-AEEDKKL---RLQLEL---------QQLRSEIER 1565 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHH---HHHHHH---------HHHHHHHHH
Confidence 778888888888888888888888888888888888888888754 1121111 111111 111111111
Q ss_pred HHHHHhhhhhHHHhh----hHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhh
Q 041227 1174 SLLNQMYMEKTVEAQ----NLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGT 1249 (1468)
Q Consensus 1174 ~llnq~~~Ek~veve----nLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~ 1249 (1468)
.--+|.-+.+ ++++.|.++++ +-+...+..+.+ +|..| |+|..+.++.-++-|+...-.+
T Consensus 1566 -----~l~ek~Ee~E~~rk~~~~~i~~~q~----~Le~E~r~k~e~------~r~KK-kle~di~elE~~ld~ank~~~d 1629 (1930)
T KOG0161|consen 1566 -----RLQEKDEEIEELRKNLQRQLESLQA----ELEAETRSKSEA------LRSKK-KLEGDINELEIQLDHANKANED 1629 (1930)
T ss_pred -----HHHhhhHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHH------Hhhhh-hhhcchHHHHHHHHHHHHhhHH
Confidence 1123444444 44555555544 333444444444 45555 7777777777777777777777
Q ss_pred hhhhH---HHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHH
Q 041227 1250 LRMES---QTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKV 1326 (1468)
Q Consensus 1250 l~~Es---~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~Lkv 1326 (1468)
+++.- ..-++.|..++..++...+=+-+-....-+=+..+.+.-+-+++.+..++--=+..+.|...+.|.+..+-.
T Consensus 1630 ~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~ 1709 (1930)
T KOG0161|consen 1630 AQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNA 1709 (1930)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 77553 344555555665555554444444444555566777888889999999998889999999999999998876
Q ss_pred H----HHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhch--------------HHHHHHHhhHHHhhhhHHHHHh
Q 041227 1327 Q----LERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDY--------------EELKAERISFMQKISTSQQVVS 1388 (1468)
Q Consensus 1327 Q----lqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~--------------eeLkaek~~~~~kis~~q~~~s 1388 (1468)
| ...=-.+..+|..|++.|.+.-.+.+..+.-.+-...+| .-|-..|..+.+-+-+||--+.
T Consensus 1710 ~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~ 1789 (1930)
T KOG0161|consen 1710 QNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLD 1789 (1930)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 233345777888888888887777666555544443333 3344567777777778887777
Q ss_pred hhhh-----hhhhhhHHHHHHHhhcCchhH
Q 041227 1389 ELDD-----CKRKKVALQEKVLRLEGDLAA 1413 (1468)
Q Consensus 1389 eled-----~k~sk~sleeKl~rle~dl~a 1413 (1468)
++|. .|.....|+.||--||+.|..
T Consensus 1790 e~E~~a~~~~k~~i~~Learir~LE~~l~~ 1819 (1930)
T KOG0161|consen 1790 EAEQAALKGGKKQIAKLEARIRELESELEG 1819 (1930)
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHHHHHhH
Confidence 7764 355567899999999998865
No 2
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=99.74 E-value=3e-18 Score=168.79 Aligned_cols=124 Identities=30% Similarity=0.421 Sum_probs=114.4
Q ss_pred cccc-ccCCccceeEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEEecc--CCCcc
Q 041227 5 IWEL-QVPKGWDKLVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVVTMG--SSRSG 81 (1468)
Q Consensus 5 FhAT-QVP~GwDkLfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVVSmG--SSRSg 81 (1468)
+|.+ .+|.+|..++|++--++.+++.+.|.++.|.+|.|.|++++..+++|..|.+++.|++|+|+|+|-++ +.+..
T Consensus 13 i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~ 92 (143)
T PF10358_consen 13 IHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKK 92 (143)
T ss_pred EEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccc
Confidence 3444 47789999999999999999999999999999999999999999999999999999999999999775 66668
Q ss_pred ccceeeechhhhcccc-CccceeeccCCC-CCCCeEEEEeeeecCCCCC
Q 041227 82 IVGEALVNLASYMNSK-TSVPLTLPLKKC-NSGTSLQLKIQCLTPRAKI 128 (1468)
Q Consensus 82 iLGEasINLAdYaeAt-kP~sVSLPLK~c-nsGTVLHVtIQ~Lt~kt~~ 128 (1468)
.||.++||||+||+.. +|.++.+||+.| ..+|+|||+|++..-+.++
T Consensus 93 ~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 93 VLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELREDP 141 (143)
T ss_pred eEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccCC
Confidence 9999999999999996 999999999999 9999999999999887654
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.73 E-value=4.3e-09 Score=138.73 Aligned_cols=733 Identities=21% Similarity=0.266 Sum_probs=363.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhh
Q 041227 284 KDLLEAAEVKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQ 363 (1468)
Q Consensus 284 kd~LeaAE~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~ 363 (1468)
...|......++........++++.++.+.+++.|++++-+.-+..+.+.+|...+...-..|+.|+..+.-.....+..
T Consensus 907 e~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke 986 (1930)
T KOG0161|consen 907 EKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666777777788888999999999999999999998888888888888888888888877777654332222111
Q ss_pred hh------------------hhccccccccChhHHHHHHHHHHhhhhhhchhHH-------HhHhhhhhhhHHHHHHHHH
Q 041227 364 ST------------------ATENLKFQARDTDKKINELEDEIKFQKESNANLA-------IQLNKTQESNIELISILQE 418 (1468)
Q Consensus 364 q~------------------~~~~lk~e~eD~~~lleELrdEL~yEKE~NaNL~-------LQLqKTQESN~ELVlaVQD 418 (1468)
-+ -.+.+.-.+...-..+.+++..+.=++..+.++. .+|+-.|++..++=.-+.+
T Consensus 987 kk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~e 1066 (1930)
T KOG0161|consen 987 KKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEE 1066 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 10 0111111122233345566655555555555443 5666677777777777777
Q ss_pred HHHHHHHHHhhhhhhhccchhhhhhhhchhhhhHHHHHHHHhhcccCCCCCCCCccccccccchhhhhhc--ccchhHHH
Q 041227 419 LEETLAKQKMEIEDLSKMKSEFEEVVGDSKQINTAKQILVKKRRDTSCDSDQEGSIVEHPIRDLNAKIEQ--QDDRNLEL 496 (1468)
Q Consensus 419 LEEmLEqk~~EIs~LS~~~~e~dd~~~d~~q~~~~~~~lVK~~~da~c~~~~e~s~lE~kI~dL~~eIEl--~D~~~LEm 496 (1468)
|+.-+..+..|+..+ ..+.++.. .+|. .+...|.+|...|.- .+.+.-..
T Consensus 1067 l~~~l~kke~El~~l---~~k~e~e~-----------~~~~--------------~l~k~i~eL~~~i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1067 LDNQLKKKESELSQL---QSKLEDEQ-----------AEVA--------------QLQKQIKELEARIKELEEELEAERA 1118 (1930)
T ss_pred HHHHHHHHHHHHHHH---HHHhhHHH-----------HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666655 33333321 1111 122333344433311 22222222
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHH-------hHHhHHHHhHHHHHHHHHHHHHHh
Q 041227 497 ELQKLQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAEWR-------SRIAEKEENIVNLEAKLSEVLCAQ 569 (1468)
Q Consensus 497 qmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e~~-------~kls~kE~eI~~L~~KL~~~~~~~ 569 (1468)
....+..+..-|...+..|...|++..+.....- ..-..-|+++. .....-+..+..|+.+....++
T Consensus 1119 ~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~----e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~-- 1192 (1930)
T KOG0161|consen 1119 SRAKAERQRRDLSEELEELKEELEEQGGTTAAQL----ELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLA-- 1192 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--
Confidence 3333333333444555555555555533222211 11112222222 2334445555555555555553
Q ss_pred hhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhccccccCCCCCCCCCCCCccccchhHHHHH
Q 041227 570 ALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLALLFKLKESGKDLLTGGASSHECPDNKSVFESESEVVQL 649 (1468)
Q Consensus 570 ~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~~~~~~~~~s~~~~~~~~~~~~~es~~~~l 649 (1468)
.|---++.|+..=+.|+++.+.|--|+.++.-.+.-...+... ..+.. -..|..+..|
T Consensus 1193 -------------el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~-----~e~~~----k~~E~~l~el 1250 (1930)
T KOG0161|consen 1193 -------------ELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKD-----LEKKD----KKLEAQLSEL 1250 (1930)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----HHHHH----HHHHHHHHHH
Confidence 2333577888888888888888888888886665532211111 00000 0122333333
Q ss_pred hHhHhhhHHHH----HHHHHHHHhhhhcccccchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhhhhc
Q 041227 650 KSQICKLEEEL----QERNALIERLSTYENRSDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELFQGK 725 (1468)
Q Consensus 650 ~~q~~~leee~----~~~~~~~~~~~~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~~~~ 725 (1468)
..-+++++.-. .++..+..+..++.+...+.|.++...-.....|...+.-.+..+++..-.-.+|...+..++..
T Consensus 1251 q~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1251 QLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHE 1330 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332221 12233333333444444444444433333333333333333333333333323332222222221
Q ss_pred ccccCCCCCCcccccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCccchhhHHHHH
Q 041227 726 EAESKDHPAAVCPLCK---IYESDDFLEMSRLLSELYEQIQLSLANLKKQQLLQQPSAFGSDKSIVPTSTDLTTQKERVE 802 (1468)
Q Consensus 726 e~e~~~~~~~~~~~~~---~~~~~~~~~~s~~~sel~~ql~~~l~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~qk~~ve 802 (1468)
- -.+. ..+.++.-++.+-+|.+.++++-....+- ..+-
T Consensus 1331 ~-----------~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e----------------------------~~~~ 1371 (1930)
T KOG0161|consen 1331 L-----------DLLREQLEEEQEAKNELERKLSKANAELAQWKKKFE----------------------------EEVL 1371 (1930)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHH
Confidence 0 0000 01112222222333333333222111100 1111
Q ss_pred HHHhhHHHHHHHHHHhhhchhHhhhhhhhHHHhhccccccccCCCCCCCccccccccccccccccccccccchhhHHHHH
Q 041227 803 AILNNFMELKRLFEEKINLSEDEIQSKKEITAVEANSDVDQNGLQGPDSNEIVLSTHIHGVDSQHMEFKSDVTETAKELL 882 (1468)
Q Consensus 803 ~~l~~~~~l~~l~e~~~~~~e~e~~s~~~~~~~~~~~~~~~~~l~~~~~~en~~~~~~~~~~~~~~e~e~~~~~l~~e~~ 882 (1468)
.-+..+.++++.+..++..++..+.- +..+ +..++.....+..++.++..++.
T Consensus 1372 ~~~eelee~kk~l~~~lq~~qe~~e~---~~~~------------------------~~~Lek~k~~l~~el~d~~~d~~ 1424 (1930)
T KOG0161|consen 1372 QRLEELEELKKKLQQRLQELEEQIEA---ANAK------------------------NASLEKAKNRLQQELEDLQLDLE 1424 (1930)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH---HHHH------------------------HHHHHHHHHHHHhHHHHHHHHHH
Confidence 11345666777777777777755431 0011 11111111111111222222111
Q ss_pred H--------------HHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhh
Q 041227 883 E--------------KIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQ 948 (1468)
Q Consensus 883 ~--------------~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~ 948 (1468)
. ...-++..|.....-..|+++-+..-+.+++.+-.+.+....+-+
T Consensus 1425 ~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e-------------------- 1484 (1930)
T KOG0161|consen 1425 RSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLE-------------------- 1484 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------------
Confidence 1 111111222222222222222222222222222222222221111
Q ss_pred hhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhh
Q 041227 949 SEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHA 1028 (1468)
Q Consensus 949 ~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~ 1028 (1468)
.++.-..-|+.+.+.+.++..++.+++..+.+||..+-.|-.++..|-++|-.+-++ + +.-++.+
T Consensus 1485 --------~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~-----l--e~eE~~~ 1549 (1930)
T KOG0161|consen 1485 --------QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAA-----L--EAEEDKK 1549 (1930)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h--hhhhhHH
Confidence 223334457888888899999999999888888888888888888887777766655 2 2222223
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhh
Q 041227 1029 MSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEH 1108 (1468)
Q Consensus 1029 ~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~ 1108 (1468)
.+++-++. +.--++.++.++.-|+.|-.|+ .+|-+.+++.-+..+=+++..+.=..|-.|||.
T Consensus 1550 lr~~~~~~--------------~~r~e~er~l~ek~Ee~E~~rk---~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~d 1612 (1930)
T KOG0161|consen 1550 LRLQLELQ--------------QLRSEIERRLQEKDEEIEELRK---NLQRQLESLQAELEAETRSKSEALRSKKKLEGD 1612 (1930)
T ss_pred HHHHHHHH--------------HHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcc
Confidence 33332222 2333455677777777777765 456666666665556666666666666699999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhh
Q 041227 1109 CAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQ 1188 (1468)
Q Consensus 1109 ~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~veve 1188 (1468)
...||..|+.|-+...|..|.+--+-.-+- .|.-+++..-.-..+..+-+ .+=.-.+.
T Consensus 1613 i~elE~~ld~ank~~~d~~K~lkk~q~~~k-----------~lq~~~e~~~~~~~e~~~q~-----------~~aerr~~ 1670 (1930)
T KOG0161|consen 1613 INELEIQLDHANKANEDAQKQLKKLQAQLK-----------ELQRELEDAQRAREELLEQL-----------AEAERRLA 1670 (1930)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 999999999999999998888766655554 33334433322222221111 11122345
Q ss_pred hHHHHHHHHHHhhhhhhcccccch
Q 041227 1189 NLQREVAHLTEQISATYDEKDGTH 1212 (1468)
Q Consensus 1189 nLqrEv~~Lt~QiSat~dere~~~ 1212 (1468)
-|+.|++.|+..+.++--.|..+-
T Consensus 1671 ~l~~E~eeL~~~l~~~~Rarr~aE 1694 (1930)
T KOG0161|consen 1671 ALQAELEELREKLEALERARRQAE 1694 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 578888888888887765554443
No 4
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.72 E-value=7.6e-09 Score=134.85 Aligned_cols=658 Identities=22% Similarity=0.273 Sum_probs=341.9
Q ss_pred HHHHHhHhHhhhHHHHHHHHH-HHHhhhhcccccchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhhh
Q 041227 645 EVVQLKSQICKLEEELQERNA-LIERLSTYENRSDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELFQ 723 (1468)
Q Consensus 645 ~~~~l~~q~~~leee~~~~~~-~~~~~~~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~~ 723 (1468)
-...++++|..|+.++..... +-+++.++..=-.++..++.+++..+-.+.....+..+.+....-+|+.|..++..+-
T Consensus 799 ~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 799 TKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678899998888776533 3344444444445667777777777777777666666665544444444444443222
Q ss_pred hcccccCC--CCCCccccccccccchhHH---HHHHHH---HHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCccch
Q 041227 724 GKEAESKD--HPAAVCPLCKIYESDDFLE---MSRLLS---ELYEQIQLSLANLKKQQLLQQPSAFGSDKSIVPTSTDLT 795 (1468)
Q Consensus 724 ~~e~e~~~--~~~~~~~~~~~~~~~~~~~---~s~~~s---el~~ql~~~l~~~kk~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1468)
..=.+.+. +..+.- .+-.+..+. +....+ -|-.+|..++.+|+ +|+. ...
T Consensus 879 k~l~~~~~~~~~l~~~----~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~--~yqe----------------~~~ 936 (1822)
T KOG4674|consen 879 KRLKSAKTQLLNLDSK----SSNEDATILEDTLRKELEEITDLKEELTDALSQIR--EYQE----------------EYS 936 (1822)
T ss_pred HHHHHhHHHHhhcccc----chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH----------------HHH
Confidence 11111110 000000 001112211 222223 44788888888888 2221 111
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhchhHhhhhhhhH--HHhhccccccccCCCCCCCcccccccccccccccccccccc
Q 041227 796 TQKERVEAILNNFMELKRLFEEKINLSEDEIQSKKEI--TAVEANSDVDQNGLQGPDSNEIVLSTHIHGVDSQHMEFKSD 873 (1468)
Q Consensus 796 ~qk~~ve~~l~~~~~l~~l~e~~~~~~e~e~~s~~~~--~~~~~~~~~~~~~l~~~~~~en~~~~~~~~~~~~~~e~e~~ 873 (1468)
+.-.-++..-+.+-+....++++|-.+..++-|.+.- ++...+. ...++..+.+.+.+.....|...
T Consensus 937 s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~-----------~l~~e~~~~~k~~e~~~~~~~~e 1005 (1822)
T KOG4674|consen 937 SLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIE-----------NLREELELSTKGKEDKLLDLSRE 1005 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhccccchhhhHHHHHHH
Confidence 2223334444455555566777777777776553321 1111111 11122233444444333333333
Q ss_pred chhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHH-------HHHHhHHHHHHHHHhhccchhhhhhh
Q 041227 874 VTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQ-------KEKSQLEESIEIMLREGTVASKCLND 946 (1468)
Q Consensus 874 ~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq-------~Ek~qLee~~e~~~~e~~i~skcld~ 946 (1468)
+..+..++..-..-+ .+=..-++-.+.++.+.+..+. .+.-++.+-+..+.+-+.--.+|
T Consensus 1006 ~~sl~ne~~~~~~~~----------s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~--- 1072 (1822)
T KOG4674|consen 1006 ISSLQNELKSLLKAA----------SQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKC--- 1072 (1822)
T ss_pred hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 333333332211100 0001112333333333322222 22222222233333333333444
Q ss_pred hhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhh------
Q 041227 947 LQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLE------ 1020 (1468)
Q Consensus 947 ~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~------ 1020 (1468)
...+.-|..+.|+..+++.-.++...| .+.-| ++|...+-.||.+|++|...|-+=-+.+...
T Consensus 1073 -~~e~~~Lk~~~~~~~~~l~e~~~~w~E---~~~~L-------eqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~ 1141 (1822)
T KOG4674|consen 1073 -NDELLKLKKSRESRHALLSEQERDWSE---KEDAL-------EQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNL 1141 (1822)
T ss_pred -HHHHHHHHhhHHHHHhHHhhcccchHH---HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 445566888888888888888877655 33333 4444444455555555544443333322222
Q ss_pred ------hccchhhhhhHHHHHHHHHHHHHHhHHH---HHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhh--------
Q 041227 1021 ------LENSATHAMSLQDEIRRLEAEMEAQKVE---TKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEG-------- 1083 (1468)
Q Consensus 1021 ------l~nS~s~~~~Lqdei~r~~~e~e~qk~~---~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~-------- 1083 (1468)
.....++|.+|..+...+.+..+.=++| ++|+...+++..-.+|. +|.+.-.+=|++|-+
T Consensus 1142 S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~---sL~~~r~~~q~~a~s~~e~~~i~ 1218 (1822)
T KOG4674|consen 1142 SAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQR---SLTAERASSQKSAVSDDEHKEIL 1218 (1822)
T ss_pred cccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhccchhhhhhhhHHH
Confidence 3445889999999999998888777665 56777777776655553 443333444555553
Q ss_pred -HHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHh
Q 041227 1084 -LIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHEN 1162 (1468)
Q Consensus 1084 -lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~ 1162 (1468)
-+++.+-|--+|.=||.-+....+.|+.|..++..-+..-+.|=-....|.++++ ....|+..+=.+|
T Consensus 1219 ~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~-----------~~~ael~~l~~e~ 1287 (1822)
T KOG4674|consen 1219 EKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQ-----------EKVAELKKLEEEN 1287 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 3455556668899999999999999999999888887777777777777777777 6777888888888
Q ss_pred hhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhh-----------hhhHHHHH
Q 041227 1163 RKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLR-----------ADKAVLEA 1231 (1468)
Q Consensus 1163 ~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~Lr-----------AdkA~lE~ 1231 (1468)
..++-|. ..|+++-.-=-.-..+.|..||..|-+-+. ++++...+.=-+.-.+| -+++.+.
T Consensus 1288 ~~wK~R~---q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~----~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt- 1359 (1822)
T KOG4674|consen 1288 DRWKQRN---QDLLEKYKDSDKNDYEKLKSEISRLKEELE----EKENLIAELKKELNRLQEKIKKQLDELNNEKANLT- 1359 (1822)
T ss_pred HHHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8887755 334555222224455555556666655555 33333333333333333 1122222
Q ss_pred HHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccch
Q 041227 1232 ALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASD 1311 (1468)
Q Consensus 1232 ~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~ 1311 (1468)
+.-.+++.....|.....|-..++..+-+.+.+-.+.++|.--++++.
T Consensus 1360 ---~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~rk~e~~----------------------------- 1407 (1822)
T KOG4674|consen 1360 ---KELEQLEDLKTRLAAALSEKNAQELELSDKKKAHELMQEDTSRKLEKL----------------------------- 1407 (1822)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 222222222222222222333334444444444444444433332222
Q ss_pred HHHHHHHHHhhhhHHHH----HHHhhhhhHHHHHHHHHHHHhhhhHH--HHHHHHhhhhchHHHHHHHhhHHHhhhhHHH
Q 041227 1312 YERLQLTEEISSLKVQL----ERTAQFQDEVLSLKKLLNEAKFENER--LEASFQILSGDYEELKAERISFMQKISTSQQ 1385 (1468)
Q Consensus 1312 yErqq~~eE~s~LkvQl----qk~~~lqdEv~~lk~sL~~~kfek~r--Le~sl~~~S~e~eeLkaek~~~~~kis~~q~ 1385 (1468)
|++.-+++|+..|+-+| |-.+.++++--+..+.+.+++-+..+ -+-.++-+...-+.+...=.....++..+..
T Consensus 1408 ~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~e~~~~~~~~~~~~~~~le~ 1487 (1822)
T KOG4674|consen 1408 KEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTERLLEEIKKLLETVRKKTVDADSKSENLEG 1487 (1822)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 22222888888888888 66677888888888888888777666 2223333333333333333444455556655
Q ss_pred HHhhh----hhhhhhhhHHHHHHHhhcCchhH
Q 041227 1386 VVSEL----DDCKRKKVALQEKVLRLEGDLAA 1413 (1468)
Q Consensus 1386 ~~sel----ed~k~sk~sleeKl~rle~dl~a 1413 (1468)
+-+++ ++.++.++.+.+-+.++-.-|+.
T Consensus 1488 ~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~ 1519 (1822)
T KOG4674|consen 1488 TKKELESEKEELKQRLTELAAENLKLRSRLAK 1519 (1822)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhcch
Confidence 54433 44555555555555554444443
No 5
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.70 E-value=4.2e-08 Score=128.14 Aligned_cols=313 Identities=22% Similarity=0.232 Sum_probs=188.0
Q ss_pred hhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhh
Q 041227 984 VHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGV 1063 (1468)
Q Consensus 984 ~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~ 1063 (1468)
.-++-|.+|+.=|..-=..|=+++..|-.|+.+.++-+.+..+....++.--..-.--+++++.+|-..++..-+++
T Consensus 745 ~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~kl--- 821 (1822)
T KOG4674|consen 745 AELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKL--- 821 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34455555555555555555555666666666666666666665555555544444455555555555555555553
Q ss_pred hhhhhHHhhcCc-------hhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhh-----hhHH
Q 041227 1064 QEECEYLKVANP-------KLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLS-----MKVE 1131 (1468)
Q Consensus 1064 Qee~e~Lr~~N~-------kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~-----k~Ve 1131 (1468)
|+..+-+|..+. ..|.+++-++-+-.++.+.+..++.-.-.|.-+.+.|+-+|+..+-+|..+= ..+.
T Consensus 822 q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~ 901 (1822)
T KOG4674|consen 822 QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDAT 901 (1822)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhh
Confidence 445555554443 2366666667777788888888888888888889999999988877776553 3455
Q ss_pred HHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHH---------------HHhhhh--hH----HHhhhH
Q 041227 1132 ALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLL---------------NQMYME--KT----VEAQNL 1190 (1468)
Q Consensus 1132 ~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~ll---------------nq~~~E--k~----vevenL 1190 (1468)
.++-.|.-.++.|+.-...|+..+..|-+ +.+.+...+-.| .+|... |. .++..|
T Consensus 902 ~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~----yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L 977 (1822)
T KOG4674|consen 902 ILEDTLRKELEEITDLKEELTDALSQIRE----YQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSEL 977 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665444444443333221 111111111111 122111 11 123356
Q ss_pred HHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhh-------hhhHHHHHHHHHH
Q 041227 1191 QREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTL-------RMESQTKIQQLKS 1263 (1468)
Q Consensus 1191 qrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l-------~~Es~~ki~~l~~ 1263 (1468)
+.++..|.+..-..-...+.-..+++.+.+.|+-+.-.+.....+.+.++.-+.+++... +..|+..+...
T Consensus 978 ~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~h-- 1055 (1822)
T KOG4674|consen 978 EKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQH-- 1055 (1822)
T ss_pred HHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 666666666665555556666889999999999999999999999998888888888777 55666554433
Q ss_pred HHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhcccc
Q 041227 1264 ELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKL 1307 (1468)
Q Consensus 1264 ~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElkl 1307 (1468)
++..+---=|..+..++..=+...++.-++..+...+++.+.
T Consensus 1056 --a~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w 1097 (1822)
T KOG4674|consen 1056 --ADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDW 1097 (1822)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccch
Confidence 333333334445555555556666666666666666665544
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=5.4e-09 Score=136.15 Aligned_cols=130 Identities=12% Similarity=0.181 Sum_probs=68.4
Q ss_pred hhccchhhhccchhhhhhHHHHHHHHHHHHHHhH---HHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhh
Q 041227 1013 ERESSRLELENSATHAMSLQDEIRRLEAEMEAQK---VETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECS 1089 (1468)
Q Consensus 1013 E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk---~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~ 1089 (1468)
+-..-++++.+.-.....|+.++..+..+.+.+. .+++.++...+..|..++.+.+-++..+. +....+-.++.
T Consensus 868 el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 944 (1311)
T TIGR00606 868 ELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE---TSNKKAQDKVN 944 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3334444555555555566666666665554443 34455566677777777777766665443 22233444455
Q ss_pred hHHHhHHHHHHHHhhhhhhhHH-HHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhh
Q 041227 1090 LLQKSNAELRKQKVNLHEHCAV-LEAQLGESEKGFSSLSMKVEALEEKYLSMLEEIS 1145 (1468)
Q Consensus 1090 slQ~~~~eLr~qklelh~~~t~-lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~is 1145 (1468)
.++.....|..-.-++..|... ...+|.+....+......++.|+..+..+-..|.
T Consensus 945 ~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~ 1001 (1311)
T TIGR00606 945 DIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMR 1001 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444332 1233444444444445666666666664444443
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=1.2e-06 Score=114.66 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=69.8
Q ss_pred HHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHH
Q 041227 1099 RKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQ 1178 (1468)
Q Consensus 1099 r~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq 1178 (1468)
.++...+...+..|++++..+.- .++++.|+..+..+..++. .+..+++.+..+....+.+|...+.-.+.
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~-----~~s~~ele~ei~~~~~el~----~l~~~~e~l~~e~e~~~~eI~~Lq~ki~e 868 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDL-----DRTVQQVNQEKQEKQHELD----TVVSKIELNRKLIQDQQEQIQHLKSKTNE 868 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-----cCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666776664433 2466777776664444433 33344444444444444444333332333
Q ss_pred hhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHH
Q 041227 1179 MYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKI 1258 (1468)
Q Consensus 1179 ~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki 1258 (1468)
+.-++.--...++ ....|..++.. -+.++-.+++....++..+..+...+.-+.++++.++.....+.
T Consensus 869 l~~~klkl~~~l~-~r~~le~~L~e-----------l~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1311)
T TIGR00606 869 LKSEKLQIGTNLQ-RRQQFEEQLVE-----------LSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN 936 (1311)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211111111 11111111111 12334445555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhh
Q 041227 1259 QQLKSELAAARQ 1270 (1468)
Q Consensus 1259 ~~l~~~L~askq 1270 (1468)
..+...++..+.
T Consensus 937 ~~~~~~~~~~~~ 948 (1311)
T TIGR00606 937 KKAQDKVNDIKE 948 (1311)
T ss_pred HHHHHHHHHHHH
Confidence 555544444433
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.37 E-value=3.6e-07 Score=114.99 Aligned_cols=95 Identities=27% Similarity=0.369 Sum_probs=51.8
Q ss_pred hhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhh
Q 041227 942 KCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLEL 1021 (1468)
Q Consensus 942 kcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l 1021 (1468)
..+..+..++..+...+...-.--..++.++..+......++..+..++.+..++...+..++.++..+..+.+...-.+
T Consensus 281 ~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 360 (1179)
T TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443444455555555556666666666666666666666666666666666655555555
Q ss_pred ccchhhhhhHHHHHH
Q 041227 1022 ENSATHAMSLQDEIR 1036 (1468)
Q Consensus 1022 ~nS~s~~~~Lqdei~ 1036 (1468)
.........++..+.
T Consensus 361 ~~~~~~~~~~~~~~~ 375 (1179)
T TIGR02168 361 EELEAELEELESRLE 375 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 554444444443333
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.36 E-value=1.4e-05 Score=101.64 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=22.5
Q ss_pred HHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHh
Q 041227 1232 ALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAAR 1269 (1468)
Q Consensus 1232 ~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~ask 1269 (1468)
.+.++.+++.-...+++++. ++...|+.+...|..-+
T Consensus 980 ~~~~~~~~~~~l~~q~~dl~-~~~~~l~~~i~~l~~~~ 1016 (1164)
T TIGR02169 980 EYEEVLKRLDELKEKRAKLE-EERKAILERIEEYEKKK 1016 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 44455566666666666666 66666677776666433
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.32 E-value=8.8e-07 Score=112.19 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=56.7
Q ss_pred hhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhh
Q 041227 984 VHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGV 1063 (1468)
Q Consensus 984 ~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~ 1063 (1468)
..+..++.+...+...+..++.++..+..+.+...-++..-...+..++.++..++.++ ..++..+...++...+.
T Consensus 385 ~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~l~~l~~~~~~~ 460 (1164)
T TIGR02169 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK----EDKALEIKKQEWKLEQL 460 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555444444445555555555555443333 33444444444444444
Q ss_pred hhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHH
Q 041227 1064 QEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQK 1102 (1468)
Q Consensus 1064 Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qk 1102 (1468)
+....-++..-..+++....+-.....++.....+++..
T Consensus 461 ~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~ 499 (1164)
T TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555555555555543
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.29 E-value=2.9e-05 Score=98.17 Aligned_cols=88 Identities=25% Similarity=0.257 Sum_probs=40.8
Q ss_pred HHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHH
Q 041227 1054 QDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEAL 1133 (1468)
Q Consensus 1054 qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~L 1133 (1468)
...+.++.+..++..-+......++...+.+..+...++....+++.+.-++...+..++.+++..+......-..+..+
T Consensus 841 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 920 (1179)
T TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444455555555555555555555555555555555555444444444444444
Q ss_pred HHHHHhHH
Q 041227 1134 EEKYLSML 1141 (1468)
Q Consensus 1134 E~kl~s~l 1141 (1468)
+.++..+.
T Consensus 921 ~~~~~~~~ 928 (1179)
T TIGR02168 921 REKLAQLE 928 (1179)
T ss_pred HHHHHHHH
Confidence 44444333
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.22 E-value=2.6e-05 Score=101.56 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=27.7
Q ss_pred HHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhh
Q 041227 1231 AALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQN 1271 (1468)
Q Consensus 1231 ~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn 1271 (1468)
..+.++.+++.-+.++.+++. +...+|+..+.++..-+.+
T Consensus 970 ee~e~~~~r~~~l~~~~~dl~-~a~~~l~~~i~~~d~~~~~ 1009 (1163)
T COG1196 970 EEYEEVEERYEELKSQREDLE-EAKEKLLEVIEELDKEKRE 1009 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777776 7777788887777665544
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=99.19 E-value=1.9e-06 Score=108.03 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhH
Q 041227 1334 FQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAA 1413 (1468)
Q Consensus 1334 lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a 1413 (1468)
+.++|..+...++++.+++++|+ -+.-+..+..++.++...+..++..++..-. +.+.....+.+++-+|+.++..
T Consensus 570 ~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~---~~~~~l~~~r~~i~~l~~~~~~ 645 (880)
T PRK02224 570 AREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELND---ERRERLAEKRERKRELEAEFDE 645 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCH
Confidence 34678888888888888888888 4666666666666666655555555544432 2222333444555555444332
Q ss_pred HHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1414 IEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEE 1462 (1468)
Q Consensus 1414 ~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~e 1462 (1468)
-. -..+..++.++.+.=..+..++..++.+...+..++..++..
T Consensus 646 ~~-----~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~ 689 (880)
T PRK02224 646 AR-----IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENE 689 (880)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 123444444555544445444555555555554444444443
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=99.14 E-value=1.3e-05 Score=100.54 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=62.0
Q ss_pred hhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhH
Q 041227 1061 LGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSM 1140 (1468)
Q Consensus 1061 se~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~ 1140 (1468)
...++..+-|...+..|+..+..+-.++..+......++.+.-.+...+..+++.|.++...+.++-..+..++..+..+
T Consensus 345 e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l 424 (880)
T PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHH
Confidence 33444455555555566666667777777777777777777777777777777777776777777778888888888877
Q ss_pred HHHhhhhhh
Q 041227 1141 LEEISSKEK 1149 (1468)
Q Consensus 1141 le~issKEk 1149 (1468)
.+++..-+.
T Consensus 425 ~~~~~~~~~ 433 (880)
T PRK02224 425 REREAELEA 433 (880)
T ss_pred HHHHHHHHH
Confidence 777665443
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.02 E-value=0.00055 Score=89.64 Aligned_cols=101 Identities=23% Similarity=0.282 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhh-------HHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhh
Q 041227 1047 VETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEG-------LIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGES 1119 (1468)
Q Consensus 1047 ~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~-------lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS 1119 (1468)
..+.+.+..++.+..++++.+..|+..-..++.-.++ +-.+-..+....+.++.++-.+....+.++.++.+.
T Consensus 824 ~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~ 903 (1163)
T COG1196 824 ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555554443333222222 222333444444445555555555555555555544
Q ss_pred hhhhhhhhhhHHHHHHHHHhHHHHhhhh
Q 041227 1120 EKGFSSLSMKVEALEEKYLSMLEEISSK 1147 (1468)
Q Consensus 1120 ~~~f~~~~k~Ve~LE~kl~s~le~issK 1147 (1468)
+..-..+......|+.+...+..++...
T Consensus 904 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 931 (1163)
T COG1196 904 KEEIEKLRERLEELEAKLERLEVELPEL 931 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333333333
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=99.01 E-value=3.6e-05 Score=96.48 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=22.8
Q ss_pred hhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhh
Q 041227 972 SLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTN 1012 (1468)
Q Consensus 972 ~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~ 1012 (1468)
+.+++....+++..+..++++-..|.+.+..++.++..+..
T Consensus 195 l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~ 235 (880)
T PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666666666666666666555544443
No 17
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.93 E-value=1.5e-10 Score=145.10 Aligned_cols=512 Identities=23% Similarity=0.304 Sum_probs=0.0
Q ss_pred CCccccccccccccccccccccccchhhHHHHHHHHHHHhhhhhchhhhHHHHH-------HHHHhHHHHHHhhhHHHHH
Q 041227 850 DSNEIVLSTHIHGVDSQHMEFKSDVTETAKELLEKIAEIDKLKSDNLRKEEEVE-------ALRHCQNELENQISDLQKE 922 (1468)
Q Consensus 850 ~~~en~~~~~~~~~~~~~~e~e~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~-------~l~~~k~ElE~~is~lq~E 922 (1468)
..+-.+....+.++...+..+..++.+|...+-+..+.+..|......-+..++ .--..+.-|...+..++.+
T Consensus 193 ~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e 272 (859)
T PF01576_consen 193 QAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHE 272 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHH
Confidence 334444555666677777777777777777775544444443332222222233 2334455666666666666
Q ss_pred HHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhh
Q 041227 923 KSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICG 1002 (1468)
Q Consensus 923 k~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisg 1002 (1468)
+..|.+.++.-.....-..+-+.-+..+|..+-.-+|..+ ..++.+||-+|.-|..-|.+++.....+-..++.
T Consensus 273 ~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~------~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~ 346 (859)
T PF01576_consen 273 LEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEA------EQRTEELEEAKKKLERKLQELQEQLEEANAKVSS 346 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665543333323333334455556665656666544 2346689999999999999999999999999999
Q ss_pred HHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhh--------------
Q 041227 1003 LEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECE-------------- 1068 (1468)
Q Consensus 1003 LEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e-------------- 1068 (1468)
||.--..|+.|-+-..+.|++..+.+..|..+.+.+ +.+..+.|.+..+.+--+.-+|.+|.
T Consensus 347 LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~f----Dk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~le 422 (859)
T PF01576_consen 347 LEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKF----DKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELE 422 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhH
Confidence 999999999999999999999999999998887744 44445555555544444444443333
Q ss_pred -------HHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHH
Q 041227 1069 -------YLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSML 1141 (1468)
Q Consensus 1069 -------~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~l 1141 (1468)
-|++.|..|++-+..|+.-+..--+...+|.+.+ ..||+++.+.+..+.+..-.+...|.+..
T Consensus 423 e~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~k-------r~LE~e~~El~~~leE~E~~l~~~E~~~l--- 492 (859)
T PF01576_consen 423 ELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAK-------RRLEQEKEELQEQLEEAEDALEAEEQKKL--- 492 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3333333333333333333332222233333332 23333333333333333444444444444
Q ss_pred HHhhhhhhHhhHHHHHHHHHhh-hhcchhhhHHHHHHHhhhhhHHHh----hhHHHHHHHHHHhhhhhhcccccchhHHH
Q 041227 1142 EEISSKEKALNLELDALLHENR-KHKDKSVTEESLLNQMYMEKTVEA----QNLQREVAHLTEQISATYDEKDGTHSEAV 1216 (1468)
Q Consensus 1142 e~issKEk~l~~ELe~l~qE~~-~~~ek~~~~~~llnq~~~Ek~vev----enLqrEv~~Lt~QiSat~dere~~~s~av 1216 (1468)
+|..+|..+=+++. ...+ |--++ .|++|.|.+|..++.+ |+. .-..|+
T Consensus 493 --------Rl~~el~~~r~e~er~l~e---------------KeeE~E~~Rr~~qr~l~~le~~LE~---E~k-~r~~~~ 545 (859)
T PF01576_consen 493 --------RLQVELQQLRQEIERELQE---------------KEEEFEETRRNHQRQLESLEAELEE---ERK-ERAEAL 545 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------HHHHHHHHHHHHHHHHHHh---------------hhhHHHHHHHhhHHHHHHHHhHHHH---HHH-HHHHHH
Confidence 55555555544431 1111 22222 4679999999988843 322 223444
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhh---HHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcch
Q 041227 1217 LEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRME---SQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNE 1293 (1468)
Q Consensus 1217 ~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~E---s~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSne 1293 (1468)
+.-- +||+.+.++..++.|+.....+.++. +...|++|...|--++...+=+....-.+-+-+....+.-
T Consensus 546 r~kk-------KLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~el 618 (859)
T PF01576_consen 546 REKK-------KLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAEL 618 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH-------HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 45555555545554444444433322 2233333333333322221111111111111111222233
Q ss_pred HhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHH----HHhhhhhHHHHHHHHHHHHhhhhHHHHHHH----Hhhh--
Q 041227 1294 EKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLE----RTAQFQDEVLSLKKLLNEAKFENERLEASF----QILS-- 1363 (1468)
Q Consensus 1294 eklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlq----k~~~lqdEv~~lk~sL~~~kfek~rLe~sl----~~~S-- 1363 (1468)
+-++......+--=+.-+-|+.-+.+++..|-.+-. ....|+.+|..|...|+++..+..-+..-+ .-+.
T Consensus 619 ee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l 698 (859)
T PF01576_consen 619 EELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQL 698 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 333333333333334444455555566655544321 223467777778887777766654433322 1222
Q ss_pred --------hchHHHHHHHhhHHHhhhhHHHHHhhhhhhh-----hhhhHHHHHHHhhcCchhHHH
Q 041227 1364 --------GDYEELKAERISFMQKISTSQQVVSELDDCK-----RKKVALQEKVLRLEGDLAAIE 1415 (1468)
Q Consensus 1364 --------~e~eeLkaek~~~~~kis~~q~~~seled~k-----~sk~sleeKl~rle~dl~a~e 1415 (1468)
.-|..|-..|..+...|..|+.-+.++|.-- .....|+.||--||..|-+-.
T Consensus 699 ~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~ 763 (859)
T PF01576_consen 699 AEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQ 763 (859)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHH
Confidence 2344455678888888899998888888743 344578888888888876543
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.89 E-value=0.0011 Score=83.80 Aligned_cols=503 Identities=24% Similarity=0.303 Sum_probs=261.7
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhchhh-------hHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhh
Q 041227 870 FKSDVTETAKELLEKIAEIDKLKSDNLR-------KEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASK 942 (1468)
Q Consensus 870 ~e~~~~~l~~e~~~~~~ei~~Lk~~~~~-------ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~sk 942 (1468)
++..+..+...+.....+|.+|...+.. ......+++ ..+++|..+..|+..+.+.+...-.+ ++ .+--+
T Consensus 140 ~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~-~~~~~e~~~~~le~lle~~e~~~~~~-r~-~l~~~ 216 (775)
T PF10174_consen 140 LQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALR-RIREAEARIMRLESLLERKEKEHMEA-RE-QLHRR 216 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh-hH-HHHHH
Confidence 3455556666666667777777665521 222223344 46788888888887777776444222 11 00011
Q ss_pred hhhhhhhhHHHHhccccc-cc-chhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhh
Q 041227 943 CLNDLQSEIMVLHRDMDS-QV-SVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLE 1020 (1468)
Q Consensus 943 cld~~~~dl~~l~ss~ds-~v-s~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~ 1020 (1468)
| ...-|+ .. ...++++.| ++.-.+||.-|-.|+.|..-|--++.- .+.+|+...=+
T Consensus 217 ~-----------~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~L~~~~~~-------~~~~r~~~~k~ 274 (775)
T PF10174_consen 217 L-----------QMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYRLRSRGEL-------SEADRDRLDKQ 274 (775)
T ss_pred h-----------hcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccc-------cccchHHHHHH
Confidence 0 011111 11 234444443 444455555666666666665555533 34456666557
Q ss_pred hccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhh-hhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHH
Q 041227 1021 LENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQE-ECEYLKVANPKLQATAEGLIEECSLLQKSNAELR 1099 (1468)
Q Consensus 1021 l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qe-e~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr 1099 (1468)
++..+++..-++.++.++.-++.--+.++ ..+|.++-.+.+ +.+| |.+--.|+...-..=+++.-||.-+..||
T Consensus 275 le~~~s~~~~mK~k~d~~~~eL~rk~~E~----~~~qt~l~~~~~~~~d~-r~hi~~lkesl~~ke~~~~~Lqsdve~Lr 349 (775)
T PF10174_consen 275 LEVYKSHSLAMKSKMDRLKLELSRKKSEL----EALQTRLETLEEQDSDM-RQHIEVLKESLRAKEQEAEMLQSDVEALR 349 (775)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 77777777777777776655544333332 223333322221 2333 66666666666666667777777777766
Q ss_pred HHHhhhhhhhHHHHHHhhhhhhhhhh--------------hhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhh
Q 041227 1100 KQKVNLHEHCAVLEAQLGESEKGFSS--------------LSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKH 1165 (1468)
Q Consensus 1100 ~qklelh~~~t~lE~kL~eS~~~f~~--------------~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~ 1165 (1468)
-.--+-|..|+...+.+...+.-.+. .-..|..|-.++-++.+...-|++.|..+-+.+.- +..+
T Consensus 350 ~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~ 428 (775)
T PF10174_consen 350 FRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADS 428 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc
Confidence 55555554444444333333222211 11123344444444444444455555555554442 1111
Q ss_pred cchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhc
Q 041227 1166 KDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSES 1245 (1468)
Q Consensus 1166 ~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es 1245 (1468)
-. ...++.. +|++ .+|...+...| .++ .-|+++...| .+...+..+.-++.
T Consensus 429 ~~----~~~~~~~--lEea------~~eker~~e~l---------------~e~-r~~~e~e~~E-ele~~~~e~~~lk~ 479 (775)
T PF10174_consen 429 SN----EDEALET--LEEA------LREKERLQERL---------------EEQ-RERAEKERQE-ELETYQKELKELKA 479 (775)
T ss_pred cc----hHHHHHH--HHHH------HHHHHHHHHHH---------------HHH-HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 00 0111111 1111 11111111111 111 1122222222 12222333333333
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhH
Q 041227 1246 NLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLK 1325 (1468)
Q Consensus 1246 ~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~Lk 1325 (1468)
.++.|+.+.-.+ ..+|-.+|.- ...+.|+-+|-++.|..|+.-+- +.-+++..|.
T Consensus 480 ~~~~LQ~eLsEk----~~~l~~~kee--------------~s~l~s~~~K~~s~i~~l~I~lE-------k~rek~~kl~ 534 (775)
T PF10174_consen 480 KLESLQKELSEK----ELQLEDAKEE--------------ASKLASSQEKKDSEIERLEIELE-------KKREKHEKLE 534 (775)
T ss_pred HHHHHhhhhHHH----HHHHHHhhhH--------------HHHHhhccchhhhHHHHHHHHHH-------HhhhHHHHHH
Confidence 333333222111 1122222211 12344555666677777777665 7778888888
Q ss_pred HHHHH----------HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHH--------
Q 041227 1326 VQLER----------TAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVV-------- 1387 (1468)
Q Consensus 1326 vQlqk----------~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~-------- 1387 (1468)
.||++ +..|..+|-..+.....++.|..||-..|+-+=. +|-....+|..|++.+
T Consensus 535 ~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~-------EK~~ke~ki~~LekeLek~~~~~~ 607 (775)
T PF10174_consen 535 KQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAEN-------EKNDKEKKIGELEKELEKAQMHLA 607 (775)
T ss_pred HHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHhccchh
Confidence 88877 4566677777777778888888888777765433 3444444455554432
Q ss_pred ------hhh--hhhhhhhhHHHHHHHhhcCchhHHHhhhh-----------------hhHHHhhHHHHHHhhhHHHHHHH
Q 041227 1388 ------SEL--DDCKRKKVALQEKVLRLEGDLAAIEALGS-----------------QEAALKNELAQIRRENSQFQRRI 1442 (1468)
Q Consensus 1388 ------sel--ed~k~sk~sleeKl~rle~dl~a~ea~~~-----------------~~aelk~el~ri~r~n~e~q~ki 1442 (1468)
... +..++.++.+-+-..|++.--|+.+++.. +-.+|-..|.++|++-.++.-++
T Consensus 608 ~~~~~~~~~k~~~~~~~~~elleea~Ree~~~t~e~~l~~s~q~~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL 687 (775)
T PF10174_consen 608 KQQETVEATKIEENKRKRAELLEEALREEVSITEERELAQSQQKLAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQL 687 (775)
T ss_pred hhhhhhhhhhhHHHHHhhhHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 12355556666666666655566655443 56678888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041227 1443 KCLEKEKEDCLSRAQAIEEELK 1464 (1468)
Q Consensus 1443 ~~le~E~ee~~~r~q~lE~elk 1464 (1468)
.+.++...+....+.+|+.|..
T Consensus 688 ~ssq~~L~e~d~~L~~le~Err 709 (775)
T PF10174_consen 688 ESSQQSLMERDQELNALEAERR 709 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999988873
No 19
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.85 E-value=4.7e-10 Score=140.72 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhh
Q 041227 305 EQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLA 357 (1468)
Q Consensus 305 eR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~ 357 (1468)
+.+-.+-+.|+..+..++-.+....+.|.+.+..|...-+-|..+++.=|...
T Consensus 10 ~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R 62 (859)
T PF01576_consen 10 EEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQAR 62 (859)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556778888888888888888888888888888888888888666444
No 20
>PRK01156 chromosome segregation protein; Provisional
Probab=98.74 E-value=0.00041 Score=88.00 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=17.0
Q ss_pred HHHhhhhhHHHhhhHHHHHHHHHHhhhhhhc
Q 041227 1176 LNQMYMEKTVEAQNLQREVAHLTEQISATYD 1206 (1468)
Q Consensus 1176 lnq~~~Ek~vevenLqrEv~~Lt~QiSat~d 1206 (1468)
+|..+.+....+++|+.++..|...+...-.
T Consensus 407 ~~~~~~e~~~~~~~l~~~i~~l~~~i~~l~~ 437 (895)
T PRK01156 407 IKKELNEINVKLQDISSKVSSLNQRIRALRE 437 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445556666666666666655443
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=98.73 E-value=0.0032 Score=79.48 Aligned_cols=142 Identities=23% Similarity=0.258 Sum_probs=79.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 041227 981 EMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRW 1060 (1468)
Q Consensus 981 elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~w 1060 (1468)
+++..+.+|+.+...+-.+|..++++|..|..+ ....++.++.+++...+... .+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~-------------~~~~~~~~~~~l~~~~~~~~------------~~ 607 (880)
T PRK03918 553 ELKKKLAELEKKLDELEEELAELLKELEELGFE-------------SVEELEERLKELEPFYNEYL------------EL 607 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------------hHHHHHHHHHHhhhhHHHHH------------HH
Confidence 344455566667777777888888888888642 23355556665544322110 11
Q ss_pred hhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhh-----hhhHHHHHHhhhhhhhhhhhhhhHHHHHH
Q 041227 1061 LGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLH-----EHCAVLEAQLGESEKGFSSLSMKVEALEE 1135 (1468)
Q Consensus 1061 se~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh-----~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~ 1135 (1468)
-.+..+.+-++..-+++++..+.+-..++.|++...+|+.+--++. .....++.++......+..+...++.++.
T Consensus 608 ~~~~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~ 687 (880)
T PRK03918 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEK 687 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111112222223444555555555666666666666666665 55666666776666666666666666666
Q ss_pred HHHhHHHHhhhh
Q 041227 1136 KYLSMLEEISSK 1147 (1468)
Q Consensus 1136 kl~s~le~issK 1147 (1468)
.+..+-++|...
T Consensus 688 ~i~~l~~~i~~~ 699 (880)
T PRK03918 688 RREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHH
Confidence 666665555444
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.53 E-value=0.00011 Score=89.23 Aligned_cols=96 Identities=25% Similarity=0.337 Sum_probs=63.3
Q ss_pred hhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHH
Q 041227 1077 LQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELD 1156 (1468)
Q Consensus 1077 LQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe 1156 (1468)
||...+-...|..-|++.+..|+.+...|..++..|++.|..+++....+-..+..+.. ..+.+..|.+
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~-----------~~e~l~~E~~ 209 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE-----------SSEELKEERE 209 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 45555555566666777777777777788888888888888888765554444444333 3345666777
Q ss_pred HHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhh
Q 041227 1157 ALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQI 1201 (1468)
Q Consensus 1157 ~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~Qi 1201 (1468)
.|..++.++..| +..|+-+|..|+.+.
T Consensus 210 ~L~~q~~e~~~r------------------i~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 210 SLKEQLAEARQR------------------IRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 766666555544 456777777777776
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.41 E-value=0.021 Score=72.72 Aligned_cols=237 Identities=22% Similarity=0.279 Sum_probs=129.9
Q ss_pred HHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccccccChhHHHHHHHHHHhhhhhhch---hHHHhHhhhhhhhHH
Q 041227 335 ELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKFQARDTDKKINELEDEIKFQKESNA---NLAIQLNKTQESNIE 411 (1468)
Q Consensus 335 EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~e~eD~~~lleELrdEL~yEKE~Na---NL~LQLqKTQESN~E 411 (1468)
.+--+..|+|.|+.|++...+-.+.+|..-+. +| + -||+.+=.-.++-++ .+.-||..+|..|--
T Consensus 4 ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~---fw--s-------pElkrer~~rkee~a~l~~~k~qlr~~q~e~q~ 71 (775)
T PF10174_consen 4 QLERLQRENERLRRELERKQSKLGSSMNSIKT---FW--S-------PELKRERALRKEEAAELSRLKEQLRVTQEENQK 71 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhc---cc--c-------hhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 34567788888888888776666554443322 11 1 133333333343333 567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhchhhhhHHHHHHHHhhcccCCCCCCCCccccccccchhhhhhcccc
Q 041227 412 LISILQELEETLAKQKMEIEDLSKMKSEFEEVVGDSKQINTAKQILVKKRRDTSCDSDQEGSIVEHPIRDLNAKIEQQDD 491 (1468)
Q Consensus 412 LVlaVQDLEEmLEqk~~EIs~LS~~~~e~dd~~~d~~q~~~~~~~lVK~~~da~c~~~~e~s~lE~kI~dL~~eIEl~D~ 491 (1468)
+-.-|+.|.+-| .-..++..|..- ++...++...-.. ++- .+.-+.-|+ .++
T Consensus 72 ~~~ei~~LqeEL-r~q~e~~rL~~~---~e~~~~e~e~l~~-ld~------------------~~~q~~rl~-----~E~ 123 (775)
T PF10174_consen 72 AQEEIQALQEEL-RAQRELNRLQQE---LEKAQYEFESLQE-LDK------------------AQEQFERLQ-----AER 123 (775)
T ss_pred HHHHHHHHHHHH-HHhhHHHHHHHH---hhhcccccchhhh-hhh------------------HHHHHHHHH-----HHH
Confidence 999999999999 777777766332 1111111100000 110 011112222 356
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh-hhh-----hhhhhhhhHHHHHHhHHhHHHHhHHHHHHHHHHH
Q 041227 492 RNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEM-ERH-----LKTQTLMHYEAEWRSRIAEKEENIVNLEAKLSEV 565 (1468)
Q Consensus 492 ~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~-~~~-----~~~q~l~~~e~e~~~kls~kE~eI~~L~~KL~~~ 565 (1468)
+.+-.++..|++.-.-|+..|.-+.++|...+.+|.. ..- +....-...-.-|+ ++.+.+..+..|+.-|...
T Consensus 124 er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~-~~~~~e~~~~~le~lle~~ 202 (775)
T PF10174_consen 124 ERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALR-RIREAEARIMRLESLLERK 202 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 7777788888887778888888888888877776652 110 00000000001122 3444444444444433332
Q ss_pred HHHhhh--------cccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 041227 566 LCAQAL--------KEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLAL 612 (1468)
Q Consensus 566 ~~~~~~--------~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l 612 (1468)
-...+. .++.+.++.-.-|-+-|+.=--+|-.||+....|.+|...|
T Consensus 203 e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L 257 (775)
T PF10174_consen 203 EKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRL 257 (775)
T ss_pred HHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221100 01223333333556667777788999999998888876555
No 24
>PRK01156 chromosome segregation protein; Provisional
Probab=98.35 E-value=0.028 Score=71.85 Aligned_cols=19 Identities=5% Similarity=0.265 Sum_probs=8.4
Q ss_pred HHHhhhHHHHHHHHHHhhh
Q 041227 1184 TVEAQNLQREVAHLTEQIS 1202 (1468)
Q Consensus 1184 ~vevenLqrEv~~Lt~QiS 1202 (1468)
..++++++.++..|...+.
T Consensus 475 ~~~i~~l~~~i~~l~~~~~ 493 (895)
T PRK01156 475 NEKKSRLEEKIREIEIEVK 493 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.35 E-value=0.00065 Score=82.63 Aligned_cols=286 Identities=24% Similarity=0.279 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhh
Q 041227 1048 ETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLS 1127 (1468)
Q Consensus 1048 ~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~ 1127 (1468)
.++.....++..+...+++|+-|+..+-.+....+.+.+|-.+|...+++++.+..+|.+.+..|.++..+..+-...+.
T Consensus 168 ~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk 247 (546)
T PF07888_consen 168 QLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK 247 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666667778888888888888888999999999999999999999999999999999866554444433
Q ss_pred hhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhh---
Q 041227 1128 MKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISAT--- 1204 (1468)
Q Consensus 1128 k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat--- 1204 (1468)
.....+|..-+.+...+. ....++..... ++ ..+.++++.|..++..+-+++.++
T Consensus 248 ~~~~elEq~~~eLk~rLk----~~~~~~~~~~~----------~~--------~~~~~e~e~LkeqLr~~qe~lqaSqq~ 305 (546)
T PF07888_consen 248 ELKAELEQLEAELKQRLK----ETVVQLKQEET----------QA--------QQLQQENEALKEQLRSAQEQLQASQQE 305 (546)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHhhh----------hh--------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211111110000 00011110000 00 112233344444444444444444
Q ss_pred -----------hcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHH
Q 041227 1205 -----------YDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQE 1273 (1468)
Q Consensus 1205 -----------~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~e 1273 (1468)
-.-|+++.+ |...-|=+.|.|-..|.+...+++...++.... |+.
T Consensus 306 ~~~L~~EL~~~~~~RDrt~a----eLh~aRLe~aql~~qLad~~l~lke~~~q~~qE------------------k~~-- 361 (546)
T PF07888_consen 306 AELLRKELSDAVNVRDRTMA----ELHQARLEAAQLKLQLADASLELKEGRSQWAQE------------------KQA-- 361 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH--
Confidence 333333222 222333333333333333333333333222211 111
Q ss_pred HHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhH
Q 041227 1274 VLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENE 1353 (1468)
Q Consensus 1274 mL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~ 1353 (1468)
+..-++..+-.-++|...+..++-.|+-.--|||. |.+||-+-. =.+-| -|-++.-+..
T Consensus 362 --------l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qk-------L~~ql~ke~-D~n~v-----qlsE~~rel~ 420 (546)
T PF07888_consen 362 --------LQHSAEADKDEIEKLSRELQMLEEHLQEERMERQK-------LEKQLGKEK-DCNRV-----QLSENRRELQ 420 (546)
T ss_pred --------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhh-hhhHH-----HHHHHHHHHH
Confidence 11112222233345555555556556544445554 444443211 11111 4566677777
Q ss_pred HHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHH
Q 041227 1354 RLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVAL 1400 (1468)
Q Consensus 1354 rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sl 1400 (1468)
.|+++|+++--|.+.|.++|-.+++-|-.|+.-+--+-|+|-+-.++
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~~~~~ 467 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWKEAAA 467 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 78999999999999999999999999999999888888888877665
No 26
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.22 E-value=0.00049 Score=77.10 Aligned_cols=287 Identities=20% Similarity=0.273 Sum_probs=149.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhH---HHHHHHHHhhhhcchhhhHHHHHHHhhhhhH---HHhhhH
Q 041227 1117 GESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNL---ELDALLHENRKHKDKSVTEESLLNQMYMEKT---VEAQNL 1190 (1468)
Q Consensus 1117 ~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~---ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~---vevenL 1190 (1468)
..---+|..|..+|-+||..=.-+..+|..-...... .+..++.. -+......+..+-.||. +++.||
T Consensus 7 ~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~------el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 7 QSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEE------ELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhh------HHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 3334578899999999998877555555543333222 22222222 12222233444444443 567777
Q ss_pred HHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhh
Q 041227 1191 QREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQ 1270 (1468)
Q Consensus 1191 qrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askq 1270 (1468)
+.+|.++..++......+. .+=.++..||.+.-..-.+.-+.+.++...+.+++-+..-|+..|..|-..++ +.-
T Consensus 81 ~~e~~~~r~k~e~e~~~~~----~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~-~~~ 155 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERK----DLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ-SSV 155 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT------
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc-ccc
Confidence 7777777777666532222 22234455554444444444444444444444444444444444444443332 111
Q ss_pred hHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHH-----HHHhhhhhHHHHHHHHH
Q 041227 1271 NQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQL-----ERTAQFQDEVLSLKKLL 1345 (1468)
Q Consensus 1271 n~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQl-----qk~~~lqdEv~~lk~sL 1345 (1468)
..++=..-...|...|.+++ .+|+ ..+..-+..+ .|+..++..+-.-...+
T Consensus 156 ~~e~~~~~~~dL~~~L~eiR-------------------~~ye-----~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~ 211 (312)
T PF00038_consen 156 TVEVDQFRSSDLSAALREIR-------------------AQYE-----EIAQKNREELEEWYQSKLEELRQQSEKSSEEL 211 (312)
T ss_dssp -----------HHHHHHHHH-------------------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeecccccccchhhhhhHH-------------------HHHH-----HHHhhhhhhhhhhccccccccccccccccccc
Confidence 11110000111222222221 1222 1111111111 13444555555667778
Q ss_pred HHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHHhhhhhhHHHh
Q 041227 1346 NEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALGSQEAALK 1425 (1468)
Q Consensus 1346 ~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a~ea~~~~~aelk 1425 (1468)
..++.|..++...++.+..+...|++.+.++...|..++..... ..-..+..|..||..+ ++++
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~------~~~~~~~~i~~le~el----------~~l~ 275 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE------EREEYQAEIAELEEEL----------AELR 275 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH----------HHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH------HHHHHHHhhhccchhH----------HHHH
Confidence 88888888888888888888888999888888877777655432 2223444555554443 3677
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 041227 1426 NELAQIRRENSQFQRRIKCLEKEKEDCLS 1454 (1468)
Q Consensus 1426 ~el~ri~r~n~e~q~ki~~le~E~ee~~~ 1454 (1468)
.++.+..+...++-.-.-+|+.|+.-|++
T Consensus 276 ~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 276 EEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77777777777777777788888888875
No 27
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.15 E-value=1.2e-06 Score=108.59 Aligned_cols=436 Identities=24% Similarity=0.332 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchh-hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhh
Q 041227 990 EEENLQLSERICGLEAQLRYLTNERESSRLELENSAT-HAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECE 1068 (1468)
Q Consensus 990 e~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s-~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e 1068 (1468)
..+.+.+--+|..|+.++..+..+++..+++++...+ ....++....+.+ +.+.+...+..+..+.+..+.+++++-.
T Consensus 60 ~~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~-ele~~~~~l~~~~~~le~el~~~~e~~~ 138 (722)
T PF05557_consen 60 RAELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQ-ELEARLKQLEEREEELEEELEEAEEELE 138 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777788888888888888888888777765432 3333333333322 2222222333333333333333333333
Q ss_pred HHhhc----CchhhhhhhhHH----HHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhH
Q 041227 1069 YLKVA----NPKLQATAEGLI----EECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSM 1140 (1468)
Q Consensus 1069 ~Lr~~----N~kLQaT~e~li----eec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~ 1140 (1468)
-+++. ..+||.....+- +.-+.|+....+|+.+.-......+.++.++.+.+.....|...+...+.++.++
T Consensus 139 ~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 139 QLKRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 233322222221 2223466666666666666667777777777777777777777777777777665
Q ss_pred HHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHh
Q 041227 1141 LEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVS 1220 (1468)
Q Consensus 1141 le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS 1220 (1468)
..-.+..- ........|=.+-..++. ..-++++-.+....+-+|++++.+|+..+..-..-++
T Consensus 219 ~~~q~~~~-e~e~~i~~Le~el~~~~~-----~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~----------- 281 (722)
T PF05557_consen 219 QASQASLA-EAEQKIKELEAELKDQES-----DAEINKELKEQLAHIRELEKENRRLREELKHLRQSQE----------- 281 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHhHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 43221110 001111111011111111 0113444455566667777777776654332211111
Q ss_pred hhhhhhHHHHHHHHHHHhHhhhhh---cchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhh-------HHHHHHHHhhhC
Q 041227 1221 HLRADKAVLEAALQEVQGKLKLSE---SNLGTLRMESQTKIQQLKSELAAARQNQEVLMAD-------HEKLLNLLEDVK 1290 (1468)
Q Consensus 1221 ~LrAdkA~lE~~l~ev~~k~~~~e---s~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d-------~ek~~~lle~~k 1290 (1468)
...-|+-....++.|+..++ .++..++ ..+..|-+++++-.. +..| .+.+..-+...+
T Consensus 282 ----n~elLeEe~~sLq~kl~~~E~~~~el~~lq----~e~~~Le~el~sW~s----l~~~~~~~~~sPe~l~~~l~~lq 349 (722)
T PF05557_consen 282 ----NVELLEEEKRSLQRKLERLEELEEELAELQ----LENEKLEDELNSWES----LLQDIGLEFDSPEDLARALVQLQ 349 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH----HHhcCCCCCCCHHHHHHHHHHHH
Confidence 12223333333333333333 2333222 223333333332211 1112 123444444445
Q ss_pred cchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHH
Q 041227 1291 PNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELK 1370 (1468)
Q Consensus 1291 Sneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLk 1370 (1468)
-..--|...++.+...++.-+-..+.+-.|+ ..+.+++..++..+...+..+.||+.-..++..||+-|+
T Consensus 350 ~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~----------~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR 419 (722)
T PF05557_consen 350 QENASLTEKLGSLQSELRELEEEIQELEQEK----------EQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLR 419 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556655553332222222222 234566677788888888889999999999999999999
Q ss_pred HHHhhHHHhhhhHHHH---------Hhhh-hhhhhhhhHHHHHHHhhcCchhHHHhhh-hhhHHHh---hH-------HH
Q 041227 1371 AERISFMQKISTSQQV---------VSEL-DDCKRKKVALQEKVLRLEGDLAAIEALG-SQEAALK---NE-------LA 1429 (1468)
Q Consensus 1371 aek~~~~~kis~~q~~---------~sel-ed~k~sk~sleeKl~rle~dl~a~ea~~-~~~aelk---~e-------l~ 1429 (1468)
++=.+|..-...+... ..++ ......+..++..|-.|+.+++.....+ ...++++ .. ++
T Consensus 420 ~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~ 499 (722)
T PF05557_consen 420 AQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLS 499 (722)
T ss_dssp --------------------------------------------------------------------------HHCCCC
T ss_pred HHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhh
Confidence 9999988766555433 1111 2234455566667777777776544332 2222322 11 12
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041227 1430 QIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEELKQ 1465 (1468)
Q Consensus 1430 ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~elk~ 1465 (1468)
...+.+..++.++..|+.++..++.++..||.+|..
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456678999999999999999999999988864
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.15 E-value=0.098 Score=69.62 Aligned_cols=150 Identities=23% Similarity=0.334 Sum_probs=106.8
Q ss_pred hHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhccc
Q 041227 1129 KVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEK 1208 (1468)
Q Consensus 1129 ~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~der 1208 (1468)
....+...+..+-..|+...+.+..++..+=+.-. .+ |+..--+ +..+..|.++|..|..+|..+...|
T Consensus 726 ~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~-------~e---L~~~GvD-~~~I~~l~~~i~~L~~~l~~ie~~r 794 (1201)
T PF12128_consen 726 LEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYN-------QE---LAGKGVD-PERIQQLKQEIEQLEKELKRIEERR 794 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455566666666666655555555544422211 01 2222222 4578889999999999999998877
Q ss_pred ccchh------HHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHH
Q 041227 1209 DGTHS------EAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKL 1282 (1468)
Q Consensus 1209 e~~~s------~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~ 1282 (1468)
..+.- .-..-+..+|..+..|++.+.++..++...+.++..+..+++.+++.+-..+.+.++-..-+-....++
T Consensus 795 ~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l 874 (1201)
T PF12128_consen 795 AEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRL 874 (1201)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65542 222335677888999999999999999999999999999999999999999999888877777777777
Q ss_pred HHHHhhh
Q 041227 1283 LNLLEDV 1289 (1468)
Q Consensus 1283 ~~lle~~ 1289 (1468)
..++..+
T Consensus 875 ~~~~~~l 881 (1201)
T PF12128_consen 875 RDLLEKL 881 (1201)
T ss_pred HHHHhhh
Confidence 7676665
No 29
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.09 E-value=2.1e-06 Score=106.64 Aligned_cols=197 Identities=19% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhHHhhc---CchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhh-
Q 041227 1046 KVETKQKLQDMQKRWLGVQEECEYLKVA---NPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEK- 1121 (1468)
Q Consensus 1046 k~~~kqk~qe~q~~wse~Qee~e~Lr~~---N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~- 1121 (1468)
..++++.+...|.+|.++......|+.. .....+.+..|-.+....... +.+.+.--+.-.|+..||+..+.-..
T Consensus 194 ~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~-~~i~k~l~~ql~~i~~LE~en~~l~~E 272 (722)
T PF05557_consen 194 LEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESD-AEINKELKEQLAHIRELEKENRRLREE 272 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666555555333 223333343444333332221 12222222233455666665554432
Q ss_pred --hhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHH
Q 041227 1122 --GFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTE 1199 (1468)
Q Consensus 1122 --~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~ 1199 (1468)
......+.|++|+++..++...+. +.+-+-.+.. +--|++..|+.|...-+.
T Consensus 273 lk~Lr~~~~n~elLeEe~~sLq~kl~-------------------------~~E~~~~el~-~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 273 LKHLRQSQENVELLEEEKRSLQRKLE-------------------------RLEELEEELA-ELQLENEKLEDELNSWES 326 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 233344456666666664433222 2211111111 222344555555555444
Q ss_pred hhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhh
Q 041227 1200 QISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQN 1271 (1468)
Q Consensus 1200 QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn 1271 (1468)
=+..++. --....+.+..+..||-..+.|-..+..++..++..+..+..|..|... +.+-...+.+...+
T Consensus 327 l~~~~~~-~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~-l~~~~~~l~~~~~~ 396 (722)
T PF05557_consen 327 LLQDIGL-EFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQ-LLKEIEELEASLEA 396 (722)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3333332 2233455667777888888888777777777777777777777655432 33333344433333
No 30
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.99 E-value=0.18 Score=67.17 Aligned_cols=208 Identities=18% Similarity=0.268 Sum_probs=92.0
Q ss_pred hhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhh-hhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHH
Q 041227 1180 YMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLR-ADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKI 1258 (1468)
Q Consensus 1180 ~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~Lr-AdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki 1258 (1468)
.-.+......++..+..+..++.....+++..-.+--.....++ .-++.|-+-..+...++..+..++...+.+++..+
T Consensus 673 ~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~ 752 (1201)
T PF12128_consen 673 EEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQL 752 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666666666666666666555554444444444 22344444444455555555555555555555555
Q ss_pred HHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHH
Q 041227 1259 QQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEV 1338 (1468)
Q Consensus 1259 ~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv 1338 (1468)
+.|-......=...++ |... -.+++.+|..|+-.++.-+=.|..+.+=-.-++....+...+..+.
T Consensus 753 ~~le~~~~~eL~~~Gv---D~~~-----------I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~ 818 (1201)
T PF12128_consen 753 KELEQQYNQELAGKGV---DPER-----------IQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEK 818 (1201)
T ss_pred HHHHHHHHHHHHhCCC---CHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 5554333322222221 1111 1223333333333333222222222222222222233333333333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHH
Q 041227 1339 LSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKV 1404 (1468)
Q Consensus 1339 ~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl 1404 (1468)
..|+..+..++-+...|+.-+.. ...++++.+..+..++..+.+-...++++...-..+-.++
T Consensus 819 ~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 819 PELEEQLRDLEQELQELEQELNQ---LQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444333333333322 2334555666666666666666666666655333333333
No 31
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.94 E-value=0.18 Score=65.19 Aligned_cols=414 Identities=27% Similarity=0.248 Sum_probs=231.7
Q ss_pred HHHhhhHHHHHHHhHHHHHHHHHhhccchhh---hhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhh
Q 041227 912 LENQISDLQKEKSQLEESIEIMLREGTVASK---CLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHE 988 (1468)
Q Consensus 912 lE~~is~lq~Ek~qLee~~e~~~~e~~i~sk---cld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~ 988 (1468)
|++.+..+.+|...|--+++..+.+-.-..- =+|.++.-+-+-+ -.-.-++-++.-.|+ .+-+
T Consensus 203 lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d----------~~ykerlmDs~fykd----Rvee 268 (1195)
T KOG4643|consen 203 LRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPD----------TTYKERLMDSDFYKD----RVEE 268 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCC----------CccchhhhhhHHHHH----HHHH
Confidence 3344455666666665555444544322221 1344444333222 111122334444563 5568
Q ss_pred hhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhh
Q 041227 989 LEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECE 1068 (1468)
Q Consensus 989 Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e 1068 (1468)
|++-|.-|-+----||+||+.+.-=-+- +..+++++-+|||+-+|+-..+--|---+
T Consensus 269 lkedN~vLleekeMLeeQLq~lrarse~-----------------------~tleseiiqlkqkl~dm~~erdtdr~kte 325 (1195)
T KOG4643|consen 269 LKEDNRVLLEEKEMLEEQLQKLRARSEG-----------------------ATLESEIIQLKQKLDDMRSERDTDRHKTE 325 (1195)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhcccc-----------------------CChHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 8888888888888888888765321111 23456666666676666655555554555
Q ss_pred HHhhcCchhhhhhhhHHH--------------HhhhHHHhHHHHHH---HHhhhhhhhHHHHHHhhhhhhhhhhhhhhHH
Q 041227 1069 YLKVANPKLQATAEGLIE--------------ECSLLQKSNAELRK---QKVNLHEHCAVLEAQLGESEKGFSSLSMKVE 1131 (1468)
Q Consensus 1069 ~Lr~~N~kLQaT~e~lie--------------ec~slQ~~~~eLr~---qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve 1131 (1468)
-|-..|.+||--+++|-= +-.|+|..+.+|.. -|++|.. ++. ..
T Consensus 326 eL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEn------------rrl-------t~ 386 (1195)
T KOG4643|consen 326 ELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLEN------------RRL-------TG 386 (1195)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHh------------HHH-------HH
Confidence 555555555444443321 33566666666644 2222222 222 23
Q ss_pred HHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhh-hhh--HHHhhhHHHHHHHHHHhhhhhhccc
Q 041227 1132 ALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMY-MEK--TVEAQNLQREVAHLTEQISATYDEK 1208 (1468)
Q Consensus 1132 ~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~-~Ek--~vevenLqrEv~~Lt~QiSat~der 1208 (1468)
.|+.-=++=.++..||.-.|-.|=.+|=.+|+..++||++.-+.+-+.+ .+| ++|-+.|+.|+.+.+.-++.-
T Consensus 387 tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq---- 462 (1195)
T KOG4643|consen 387 TLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ---- 462 (1195)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----
Confidence 3344444556666777777777777777888888888877655544432 344 345566777777766544433
Q ss_pred ccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhh
Q 041227 1209 DGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLED 1288 (1468)
Q Consensus 1209 e~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~ 1288 (1468)
+.+|..++.+=+-.. |+.---.|-.++|+.+...|+-+.+-..- =|...-+|.+.
T Consensus 463 -----------~~e~e~~~q~ls~~~-----------Q~~~et~el~~~iknlnk~L~~r~~elsr---l~a~~~elkeQ 517 (1195)
T KOG4643|consen 463 -----------SLENEELDQLLSLQD-----------QLEAETEELLNQIKNLNKSLNNRDLELSR---LHALKNELKEQ 517 (1195)
T ss_pred -----------HHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 223333322221111 11111224556788888888877664443 35556667777
Q ss_pred hCcchHhhhhhhhhh---ccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHH----------HHHHHHHHHHhhhhHHH
Q 041227 1289 VKPNEEKFRGTIRGL---ELKLKASDYERLQLTEEISSLKVQLERTAQFQDEV----------LSLKKLLNEAKFENERL 1355 (1468)
Q Consensus 1289 ~kSneeklk~t~~~L---Elklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv----------~~lk~sL~~~kfek~rL 1355 (1468)
|+-...-+..+-+.+ +--+--=+-|+--+..+|..|+.--|+.+.|.+.+ ..+=.+|++.+|.+++|
T Consensus 518 ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~L 597 (1195)
T KOG4643|consen 518 YKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKL 597 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766555555544 33444344566778888888888667777776544 34567899999999999
Q ss_pred HHHH--HhhhhchHHHHHHHhhHHHhhh--------hHHHHHhhhhhhhhhhhHHHHHHHhhcCc
Q 041227 1356 EASF--QILSGDYEELKAERISFMQKIS--------TSQQVVSELDDCKRKKVALQEKVLRLEGD 1410 (1468)
Q Consensus 1356 e~sl--~~~S~e~eeLkaek~~~~~kis--------~~q~~~seled~k~sk~sleeKl~rle~d 1410 (1468)
|.-. |-+-.+-..+|.--..+..+++ -.+.-.-++.|.+-...-+.+|+.+|=-.
T Consensus 598 E~e~mnQql~~d~~~~kr~ie~Lr~~~~kll~~Kkdr~ree~kel~~ekl~ve~l~e~l~~lp~~ 662 (1195)
T KOG4643|consen 598 EEEIMNQQLFEDPIPLKRDIEWLRRKESKLLKEKKDRNREETKELMDEKLQVEDLQEKLRELPLE 662 (1195)
T ss_pred HHHHhhhhhhhcCCchhhhHHHHHHHHHhhcchhHHHHHHHHhhccccchhHHHHHHHHHhCchh
Confidence 9874 4444444445544444444422 23344456666665556777787776433
No 32
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.84 E-value=0.11 Score=63.62 Aligned_cols=438 Identities=21% Similarity=0.205 Sum_probs=236.4
Q ss_pred hhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhh
Q 041227 986 LHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQE 1065 (1468)
Q Consensus 986 ls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qe 1065 (1468)
....+.+...+-+-+..+.-||...-.++.-.--+|+..+..|..|.-++.+-..+-..- .+-..-.+.||-+.+.
T Consensus 29 ~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a----~~~~e~~k~r~~e~e~ 104 (522)
T PF05701_consen 29 VKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQA----EEDSELAKFRAKELEQ 104 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHhHHHHHHHhh
Confidence 344555666677778888888888888888888889999999999999888666543221 2222333344433322
Q ss_pred h-hhHH-hhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhH---HHHHHhhhhhhhhhhhhhhHHHHHHHHHhH
Q 041227 1066 E-CEYL-KVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCA---VLEAQLGESEKGFSSLSMKVEALEEKYLSM 1140 (1468)
Q Consensus 1066 e-~e~L-r~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t---~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~ 1140 (1468)
. ++-- .....+|-..-+.......-|.....+|.+-+.++---+. .=..+-+++........++|+.|-..+.-+
T Consensus 105 ~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~l 184 (522)
T PF05701_consen 105 GIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIAL 184 (522)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1100 0022234444556666666677777777666655433221 112334556666667777788888888744
Q ss_pred HHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHh
Q 041227 1141 LEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVS 1220 (1468)
Q Consensus 1141 le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS 1220 (1468)
+..|+..-..|.+..+.......=..+-...=.-+++.-+.+|..|..+++++.+=....+. +..++.
T Consensus 185 -----------ke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~-a~~~l~ 252 (522)
T PF05701_consen 185 -----------KESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAE-ASAELE 252 (522)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44444332222222221111100011111111112455667778888888766654333222 233333
Q ss_pred hhhhhhHHHHHHHHHHHh-HhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhh
Q 041227 1221 HLRADKAVLEAALQEVQG-KLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGT 1299 (1468)
Q Consensus 1221 ~LrAdkA~lE~~l~ev~~-k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t 1299 (1468)
.|++... ...+ ++..-. ............|..+..+|..+|.+-+....|...|...++..++.-++.|.-
T Consensus 253 ~Lq~El~-------~~~~~~l~~~~-~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e 324 (522)
T PF05701_consen 253 SLQAELE-------AAKESKLEEEA-EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEE 324 (522)
T ss_pred HHHHHHH-------HHHHHHHhhhH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222 2221 111100 222233445566888888888888888887888888888888777777777777
Q ss_pred hhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHh
Q 041227 1300 IRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQK 1379 (1468)
Q Consensus 1300 ~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~k 1379 (1468)
+..|--+.. -....+++|+.+|+++ +.++-+.+..-..++.....|-..|+-++.+.+..|.+-...-..
T Consensus 325 l~~lke~e~-------~a~~~v~~L~~eL~~~---r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E 394 (522)
T PF05701_consen 325 LERLKEREK-------EASSEVSSLEAELNKT---RSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEE 394 (522)
T ss_pred HHHHHHHHH-------HHHhHHhhHHHHHHHH---HHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665555 3344455555555543 334444444445555555667777777777777776554444433
Q ss_pred hhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHHhhhhh-hHHHhhHHH----HHHhhhHHHHHHHHHHHHHHHHHHH
Q 041227 1380 ISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALGSQ-EAALKNELA----QIRRENSQFQRRIKCLEKEKEDCLS 1454 (1468)
Q Consensus 1380 is~~q~~~seled~k~sk~sleeKl~rle~dl~a~ea~~~~-~aelk~el~----ri~r~n~e~q~ki~~le~E~ee~~~ 1454 (1468)
+.++-.+++.-|..-..++.||.-..-+.-|..|+... -+++|. |. ..+...+.....|+---.|...|.+
T Consensus 395 ---~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~-l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ 470 (522)
T PF05701_consen 395 ---VEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKA-LSESESSSRASDSESSSKVTLSLEEYESLSK 470 (522)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccccccccCCCCCeeecHHHHHHHHH
Confidence 34445566666666666666666555554444333321 122221 00 0011111234456656667777777
Q ss_pred HHHHHHH
Q 041227 1455 RAQAIEE 1461 (1468)
Q Consensus 1455 r~q~lE~ 1461 (1468)
|++..|+
T Consensus 471 ka~e~ee 477 (522)
T PF05701_consen 471 KAEEAEE 477 (522)
T ss_pred HHHHHHH
Confidence 7776655
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.77 E-value=0.12 Score=67.16 Aligned_cols=288 Identities=18% Similarity=0.250 Sum_probs=182.4
Q ss_pred ccccccccc-ccchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchh
Q 041227 863 VDSQHMEFK-SDVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVAS 941 (1468)
Q Consensus 863 ~~~~~~e~e-~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~s 941 (1468)
+.+++.+|- ..|.+..+++..-..+|.+.+-.+-.-++.++.......++...++++++.+.++ ..++....
T Consensus 264 l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~-------~~e~~~~d 336 (1074)
T KOG0250|consen 264 LEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGEL-------KDEVDAQD 336 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHhhhhhh
Confidence 344555555 6777777777777777777766666666666666666677777777776666655 33444433
Q ss_pred hhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHH-hhhhhhhccchhh
Q 041227 942 KCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQL-RYLTNERESSRLE 1020 (1468)
Q Consensus 942 kcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql-~~lt~E~es~~l~ 1020 (1468)
-=+.+++.|+- .+.|.+.+++.-.++-+..+-++..+.-.|-..|..+++|+ ..++.+++
T Consensus 337 ~Ei~~~r~~~~--------------~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~----- 397 (1074)
T KOG0250|consen 337 EEIEEARKDLD--------------DLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELE----- 397 (1074)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-----
Confidence 33445555443 45566777777888888888889999999999999999998 44444433
Q ss_pred hccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHH
Q 041227 1021 LENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRK 1100 (1468)
Q Consensus 1021 l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~ 1100 (1468)
--++-...|+.+|. .++.|...|+.++++.+....+.+++.+..++-=.-|.-+.++.-++...|-+.. .
T Consensus 398 --e~e~k~~~L~~eve----k~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k----~ 467 (1074)
T KOG0250|consen 398 --ERENKLEQLKKEVE----KLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK----T 467 (1074)
T ss_pred --HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c
Confidence 22344556666666 4455889999999999999999999999887766667777777666666655432 2
Q ss_pred HHhhhhh-hhHHHHHHhhhhhhhhhhhhh-----hHHHHHHHHHhHHHHh-----------hhhhhHhhHHHHHHHHHhh
Q 041227 1101 QKVNLHE-HCAVLEAQLGESEKGFSSLSM-----KVEALEEKYLSMLEEI-----------SSKEKALNLELDALLHENR 1163 (1468)
Q Consensus 1101 qklelh~-~~t~lE~kL~eS~~~f~~~~k-----~Ve~LE~kl~s~le~i-----------ssKEk~l~~ELe~l~qE~~ 1163 (1468)
-++--.| +.-.|=..++..+++|-.--+ -|..-+-|+.+..|.+ +-+... =|.+||+.+.
T Consensus 468 dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~---~Lr~i~~~~~ 544 (1074)
T KOG0250|consen 468 DKVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDAR---ILRAIMRRLK 544 (1074)
T ss_pred chhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHH---HHHHHHHHcC
Confidence 2344444 222333334444444422111 1444455666555443 112222 3677888877
Q ss_pred hhcchh----------------------------------hhHHHHHHHhhhhhHHHhhh
Q 041227 1164 KHKDKS----------------------------------VTEESLLNQMYMEKTVEAQN 1189 (1468)
Q Consensus 1164 ~~~ek~----------------------------------~~~~~llnq~~~Ek~veven 1189 (1468)
=+--|. ...+.|.++---|++|-++|
T Consensus 545 ~~~~~ptIvvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEd 604 (1074)
T KOG0250|consen 545 IPGNRPTIVVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIED 604 (1074)
T ss_pred CCCCCCcEEEecCCccccccccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecc
Confidence 664222 23455667777788887777
No 34
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.71 E-value=0.25 Score=63.86 Aligned_cols=276 Identities=27% Similarity=0.262 Sum_probs=148.2
Q ss_pred HHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhc--ccccccc
Q 041227 886 AEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHR--DMDSQVS 963 (1468)
Q Consensus 886 ~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~s--s~ds~vs 963 (1468)
++|..|+.++---..+..-.|+.--+|=-.++-||.++.+|--.|+...--+.-.-.|=-.++..-.-|.+ -++..+-
T Consensus 301 seiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLE 380 (1195)
T KOG4643|consen 301 SEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLE 380 (1195)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHH
Confidence 45566666666566666777777777777888888888887655554433111111221111111111112 1221111
Q ss_pred hhhh--------------hhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhh
Q 041227 964 VNRN--------------LESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAM 1029 (1468)
Q Consensus 964 ~n~~--------------le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~ 1029 (1468)
..+. +-+|+.+|+..+..|++-+-.||....++--+...| +.+.+
T Consensus 381 nrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~el---------------------ed~~K 439 (1195)
T KOG4643|consen 381 NRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAEL---------------------EDLEK 439 (1195)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Confidence 1111 112344444444444444444444444444444444 44455
Q ss_pred hHHHHHHHHHHHH-------HHh--HHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHH
Q 041227 1030 SLQDEIRRLEAEM-------EAQ--KVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRK 1100 (1468)
Q Consensus 1030 ~Lqdei~r~~~e~-------e~q--k~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~ 1100 (1468)
+|+-|...|+-+. ..| ..+..-++...|.+..+ +.+-|+..-.+|-....+-+.|.+.|+....+|+.
T Consensus 440 ~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~---et~el~~~iknlnk~L~~r~~elsrl~a~~~elke 516 (1195)
T KOG4643|consen 440 KLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEA---ETEELLNQIKNLNKSLNNRDLELSRLHALKNELKE 516 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444433 333 34444455555555521 22223333234444455667788888888888998
Q ss_pred HHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhh
Q 041227 1101 QKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMY 1180 (1468)
Q Consensus 1101 qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~ 1180 (1468)
|-...-.+++.+-.++.+ ....+.-||..=.++|..|.+-=.+ +.=-.+|.-+.+-.|.+..+ + +.|
T Consensus 517 Q~kt~~~qye~~~~k~ee-------Le~~l~~lE~ENa~LlkqI~~Lk~t--~qn~~~LEq~~n~lE~~~~e---l-kk~ 583 (1195)
T KOG4643|consen 517 QYKTCDIQYELLSNKLEE-------LEELLGNLEEENAHLLKQIQSLKTT--SQNGALLEQNNNDLELIHNE---L-KKY 583 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHH--hHHHHHHHHhhhHHHHHHHH---H-HHH
Confidence 888887777777666654 3445667777777888888653222 34445666666666655443 2 456
Q ss_pred hhhHHHhhhHHHHHHHHHHhh
Q 041227 1181 MEKTVEAQNLQREVAHLTEQI 1201 (1468)
Q Consensus 1181 ~Ek~vevenLqrEv~~Lt~Qi 1201 (1468)
+.+-+ +|+|.-..|-.+|
T Consensus 584 idaL~---alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 584 IDALN---ALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHH---HHHHHHHHHHHHH
Confidence 66554 7777777777765
No 35
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.71 E-value=0.39 Score=62.26 Aligned_cols=32 Identities=34% Similarity=0.386 Sum_probs=17.7
Q ss_pred HHHhhhHHHHHhhHHHHHHHHhhhCcchHhhh
Q 041227 1266 AAARQNQEVLMADHEKLLNLLEDVKPNEEKFR 1297 (1468)
Q Consensus 1266 ~askqn~emL~~d~ek~~~lle~~kSneeklk 1297 (1468)
.......+-+..+.+++...++.+.-..+++.
T Consensus 522 ~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~ 553 (908)
T COG0419 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQ 553 (908)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444445555666666666666665555543
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.65 E-value=0.036 Score=62.47 Aligned_cols=233 Identities=22% Similarity=0.284 Sum_probs=124.1
Q ss_pred hHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHh
Q 041227 1083 GLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHEN 1162 (1468)
Q Consensus 1083 ~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~ 1162 (1468)
.+.-++..++....++|.+-.+....+..|+..+...++...+-...-..||.++.++.++|...-+.
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~------------ 139 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN------------ 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh------------
Confidence 44555566666666666666666666667777776666666666666666777777555555432221
Q ss_pred hhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhh-
Q 041227 1163 RKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLK- 1241 (1468)
Q Consensus 1163 ~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~- 1241 (1468)
-+.||..|..|+. .....+|-. .-...|.++|.++.++..
T Consensus 140 ---------------------------heeEi~~L~~~~~----------~~~~~e~~~--~~~~dL~~~L~eiR~~ye~ 180 (312)
T PF00038_consen 140 ---------------------------HEEEIEELREQIQ----------SSVTVEVDQ--FRSSDLSAALREIRAQYEE 180 (312)
T ss_dssp ---------------------------HHHHHHTTSTT----------------------------HHHHHHHHHHHHHH
T ss_pred ---------------------------hhhhhhhhhhccc----------cccceeecc--cccccchhhhhhHHHHHHH
Confidence 2224444444443 111111111 112235555555543321
Q ss_pred hhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHh
Q 041227 1242 LSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEI 1321 (1468)
Q Consensus 1242 ~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~ 1321 (1468)
.....-.++..-|+.+|..+.............+..+ --.++..+..|...+. .+-..+
T Consensus 181 ~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E--------------~~~~r~~~~~l~~el~-------~l~~~~ 239 (312)
T PF00038_consen 181 IAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEE--------------LKELRRQIQSLQAELE-------SLRAKN 239 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHhhhhhhhhhhcccccccccccccccccccchhHhH--------------HHHHHhhhhHhhhhhh-------ccccch
Confidence 1112222334445556555554333333332222222 3344444444444443 233334
Q ss_pred hhhHHHHHHHh-hhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHH
Q 041227 1322 SSLKVQLERTA-QFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVV 1387 (1468)
Q Consensus 1322 s~LkvQlqk~~-~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~ 1387 (1468)
..|+-+|..+. .+..++-.+...+.....+...|...+.-...+|.+|..-|.++...|.+-.+=+
T Consensus 240 ~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 240 ASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555555543 4455566666677777777777777888888999999999999999998766544
No 37
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.62 E-value=0.63 Score=62.12 Aligned_cols=104 Identities=21% Similarity=0.297 Sum_probs=63.8
Q ss_pred HHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhH-
Q 041227 1176 LNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMES- 1254 (1468)
Q Consensus 1176 lnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es- 1254 (1468)
|+.+|++ -.++-+.||...|--||.... +..... +.-.|...+.++-+.....-+++..|+++...++.|-
T Consensus 1008 l~~~~l~--~q~~e~~re~~~ld~Qi~~~~--~~~~~e----e~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1008 LTLRNLE--RKLKELERELSELDKQILEAD--IKSVKE----ERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHhH--HHHHHH----HHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4444443 345667777777777776543 221112 3346788888888888889999999999988877554
Q ss_pred ----HHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhh
Q 041227 1255 ----QTKIQQLKSELAAARQNQEVLMADHEKLLNLLED 1288 (1468)
Q Consensus 1255 ----~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~ 1288 (1468)
+.+.+++-+.+.-.+-- ++-.-|-.++.+-|..
T Consensus 1080 ~~~~kd~~~nyr~~~ie~~tt-~~~~~DL~ky~~aLD~ 1116 (1294)
T KOG0962|consen 1080 EKDFKDAEKNYRKALIELKTT-ELSNKDLDKYYKALDK 1116 (1294)
T ss_pred hhhhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44555555555554444 3334455565555443
No 38
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.45 Score=60.34 Aligned_cols=520 Identities=20% Similarity=0.228 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCccchhhHHHHHHHHhhHHHHHHHHHHhhhchhHhhhh
Q 041227 749 LEMSRLLSELYEQIQLSLANLKKQQLLQQPSAFGSDKSIVPTSTDLTTQKERVEAILNNFMELKRLFEEKINLSEDEIQS 828 (1468)
Q Consensus 749 ~~~s~~~sel~~ql~~~l~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~qk~~ve~~l~~~~~l~~l~e~~~~~~e~e~~s 828 (1468)
-+++..++++-.++....+.+. ++..|-+.+-+.+.-+..+.--|.+.++.....+.+
T Consensus 72 ~~~~~~~~el~~k~s~~~~~~~----------------------e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t 129 (698)
T KOG0978|consen 72 ATLSEQISELLDKISTAETEVD----------------------ELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT 129 (698)
T ss_pred HHHHHHHHHHHHHHHHHhccHH----------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3556666666666665544443 566677777777877877777788877776654432
Q ss_pred hhhHHHhhccccccccCCCCCCCccccccccccccccccccccccchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHh
Q 041227 829 KKEITAVEANSDVDQNGLQGPDSNEIVLSTHIHGVDSQHMEFKSDVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHC 908 (1468)
Q Consensus 829 ~~~~~~~~~~~~~~~~~l~~~~~~en~~~~~~~~~~~~~~e~e~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~ 908 (1468)
.++.+ +.+. ..+|-.+.++-+...+|+-++-.....-.|++.++.+
T Consensus 130 -------~~~~~-------------~~~~--------------~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~ 175 (698)
T KOG0978|consen 130 -------YGNGN-------------GSLS--------------GTITVNSTELEELRDEIEELRELASTRMEELEKLQLY 175 (698)
T ss_pred -------CCCcc-------------cccC--------------cccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 11111 0111 1122233344444455555555555556677777777
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhc-ccccccchh-------------hhhhhhhhh
Q 041227 909 QNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHR-DMDSQVSVN-------------RNLESKSLE 974 (1468)
Q Consensus 909 k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~s-s~ds~vs~n-------------~~le~k~~e 974 (1468)
-.++..+++.+..+.+++.+. .+.-+....|+- .|.-+-..+ ..|+-+..+ +..+...-+
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~e~~~~~--~NE~l~~~~~~~~e~~~~~~~~~lee~~~~~~~e~~~l~~~ 249 (698)
T KOG0978|consen 176 SDEILRQLDRFRVELRSLKEK----VRSETFELRCLQ--YNEELQRKTMESDEAINSKKVIKLEEKLAQCVKEYEMLRKE 249 (698)
T ss_pred HHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHH--hhhhcccccchhhhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777766655322 222333344543 222211111 233333333 222233334
Q ss_pred hhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Q 041227 975 LESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQ 1054 (1468)
Q Consensus 975 les~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~q 1054 (1468)
+|..+...+. .+.+..|-.-|+--|..++.+|+..+++.-.+ .+.+-+|.....-...-++.+-.+.+.-+-
T Consensus 250 ~e~~~~~~~~-~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t-------~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~ 321 (698)
T KOG0978|consen 250 FENNKSQNDL-FSSINREMRHLISSLQEHEKLLKEYERELKDT-------ESDNLKLRKQHSSAADSLESKSRDLESLLD 321 (698)
T ss_pred HHHhHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 5555555555 66666666666666666666666533332222 222222333222222233334444444444
Q ss_pred HHHHhHhhhhhhhhHHhhcCchhh-hhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHH
Q 041227 1055 DMQKRWLGVQEECEYLKVANPKLQ-ATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEAL 1133 (1468)
Q Consensus 1055 e~q~~wse~Qee~e~Lr~~N~kLQ-aT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~L 1133 (1468)
..|.-|+ -+..|+ ++.+-+ |++.++.-..+| .+...=++=+.+...+....+.+..+
T Consensus 322 ~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~e~~k~~di~~~k~el~~~~~~~ 379 (698)
T KOG0978|consen 322 KIQDLIS-----------QEAELSKKLRSKL---LESAKKLKILLR--------EKDRESQKERDILVAKSELLKTNELR 379 (698)
T ss_pred HHHHHHH-----------HHHHHHHHHHHHH---HHHHHHHHhHHH--------HHHHHhhhhHhHHHHHHHHHHHHHHH
Confidence 4444432 222222 222111 222222222222 22222222223333333333333322
Q ss_pred HHHHHhHHHHhhhhh-hHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccch
Q 041227 1134 EEKYLSMLEEISSKE-KALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTH 1212 (1468)
Q Consensus 1134 E~kl~s~le~issKE-k~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~ 1212 (1468)
=+-+.+++++-..|= ..+..|++.+.|.-....+..... +-+|-+ ..+..=-++|..+..-|..+.....
T Consensus 380 le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e---~~k~~~---d~~~r~~~~~~~~~e~Lqk~~~~~k--- 450 (698)
T KOG0978|consen 380 LEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSE---IRKQAL---DDAERQIRQVEELSEELQKKEKNFK--- 450 (698)
T ss_pred HHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhh---HHHHHhHHHHHHHHHHHHHHHHHHH---
Confidence 222333332222221 245677777777766554432111 111111 1111111355555555555544333
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcc
Q 041227 1213 SEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPN 1292 (1468)
Q Consensus 1213 s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSn 1292 (1468)
+|.+.--..=+|+.+.|++..+.=-|+ .|...+---|+.+...+.|-+-.|+-+-..|-..+-..++-
T Consensus 451 --------~ll~e~~t~gsA~ed~Qeqn~kL~~el----~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 451 --------CLLSEMETIGSAFEDMQEQNQKLLQEL----REKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666666654432222 25556666788888889999999999999999999999999
Q ss_pred hHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHH
Q 041227 1293 EEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAE 1372 (1468)
Q Consensus 1293 eeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkae 1372 (1468)
.+++.-.|..||-+++..-=..+-+..| ++.--|.++.....+..++.++..++.+..+.++-|.-+...|.++..+
T Consensus 519 ~~~~~~~i~~leeq~~~lt~~~~~l~~e---l~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~e 595 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLTSNESKLIKE---LTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELE 595 (698)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887544444444444 3344567888888888889999888888888888877777777666555
Q ss_pred HhhHHHhhhhHH
Q 041227 1373 RISFMQKISTSQ 1384 (1468)
Q Consensus 1373 k~~~~~kis~~q 1384 (1468)
..-+..|-+.+|
T Consensus 596 le~~~~k~~rle 607 (698)
T KOG0978|consen 596 LEIEKFKRKRLE 607 (698)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.46 E-value=0.86 Score=59.84 Aligned_cols=199 Identities=22% Similarity=0.193 Sum_probs=140.2
Q ss_pred hhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHH
Q 041227 1079 ATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDAL 1158 (1468)
Q Consensus 1079 aT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l 1158 (1468)
++.+.++.|..+..+...+.......+.+..-+++.+..+-...|...-..+.-.=.+|+.+-+++...+-.+.+.-+.-
T Consensus 734 ~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~ 813 (1074)
T KOG0250|consen 734 SKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEK 813 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhh
Confidence 45678899999999999999999999999999999999999999999998888888899988888888888888766555
Q ss_pred HHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhccc--ccch-----hHHHHHHhhhhhhhHHHHH
Q 041227 1159 LHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEK--DGTH-----SEAVLEVSHLRADKAVLEA 1231 (1468)
Q Consensus 1159 ~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~der--e~~~-----s~av~EvS~LrAdkA~lE~ 1231 (1468)
++--.+.+.++.. + ..+-+++.+++..++.-+.+-.+.|.+. +..+ .+.=.|...|++-.++++.
T Consensus 814 ~HyE~~~K~~l~~----l----~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee 885 (1074)
T KOG0250|consen 814 RHYEDKLKSRLEE----L----KQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEE 885 (1074)
T ss_pred hhHHHHHHHhhHH----H----HHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 4433333322211 2 3345666788888888888888888877 5555 5566788888888888888
Q ss_pred HHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHH
Q 041227 1232 ALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLL 1286 (1468)
Q Consensus 1232 ~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~ll 1286 (1468)
-+.+.++..+.+--.-..+.++..-++- +..-|++.+---+-.-.+|.++..++
T Consensus 886 ~~~~~~e~~~~~~~~~~~~~k~~~~k~~-~~e~L~~l~~~l~~R~~~~qk~r~~~ 939 (1074)
T KOG0250|consen 886 SLGELEELHRGLHEARKELKKEDELKVT-LDELLKALGEALESREQKYQKFRKLL 939 (1074)
T ss_pred hcchHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666644444445544444444 33333444444444444555555444
No 40
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.44 E-value=0.24 Score=65.06 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=97.1
Q ss_pred hhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHH---HHHHHHHHhHHHHHHHHHHHHHhHhhhhhhh
Q 041227 991 EENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIR---RLEAEMEAQKVETKQKLQDMQKRWLGVQEEC 1067 (1468)
Q Consensus 991 ~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~---r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~ 1067 (1468)
++.-+..++.+..+++++.|-.+--..+-+|++..-...++.+..+ .++.+.+++-.++.-+. ++|
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~-----------~~~ 562 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAES-----------EDA 562 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhH-----------HHH
Confidence 4555566666666666666666555555556555544455533333 23333333333333222 234
Q ss_pred hHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhh
Q 041227 1068 EYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSK 1147 (1468)
Q Consensus 1068 e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issK 1147 (1468)
--||.++..+--....+-++-..++.-+..|..-+..|...-..+=+.+....+........+..|++.++|+.+++-.+
T Consensus 563 ~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~ 642 (1317)
T KOG0612|consen 563 GKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAG 642 (1317)
T ss_pred hhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 44555555554455555555566666666666666666666666677777888888899999999999999998877655
Q ss_pred hhHhhHHHHHHHHHhhhhcchh
Q 041227 1148 EKALNLELDALLHENRKHKDKS 1169 (1468)
Q Consensus 1148 Ek~l~~ELe~l~qE~~~~~ek~ 1169 (1468)
.+ ++..+-...+...+++
T Consensus 643 ~~----~l~k~~el~r~~~e~~ 660 (1317)
T KOG0612|consen 643 KK----ELLKVEELKRENQERI 660 (1317)
T ss_pred hh----HHHHHHHHHHHHHHHH
Confidence 44 4444444444444433
No 41
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.9 Score=57.80 Aligned_cols=148 Identities=24% Similarity=0.284 Sum_probs=98.6
Q ss_pred HHHHHhhhHHHHHHHhHH-HHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhh
Q 041227 910 NELENQISDLQKEKSQLE-ESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHE 988 (1468)
Q Consensus 910 ~ElE~~is~lq~Ek~qLe-e~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~ 988 (1468)
-+|+.++..|--+++.-+ .|+. +..++..+..=-+-+++++- +|+..++-+-++-.-++..|.+
T Consensus 464 ed~Qeqn~kL~~el~ekdd~nfk-lm~e~~~~~q~~k~L~~ek~--------------~l~~~i~~l~~~~~~~~~~i~~ 528 (698)
T KOG0978|consen 464 EDMQEQNQKLLQELREKDDKNFK-LMSERIKANQKHKLLREEKS--------------KLEEQILTLKASVDKLELKIGK 528 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777766666554 3443 33444444444455666555 5556677777777788889999
Q ss_pred hhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHH---HhHHHHHHHHHHHHHhHhhhhh
Q 041227 989 LEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEME---AQKVETKQKLQDMQKRWLGVQE 1065 (1468)
Q Consensus 989 Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e---~qk~~~kqk~qe~q~~wse~Qe 1065 (1468)
||..---|+...+++.++++.+|.=.+...=-.-++...+..||-+....++.|+ .+..+..-.+..+-.+..-+||
T Consensus 529 leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE 608 (698)
T KOG0978|consen 529 LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE 608 (698)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876665555555555555555555555555443 3445555566666677777777
Q ss_pred hhhHHhh
Q 041227 1066 ECEYLKV 1072 (1468)
Q Consensus 1066 e~e~Lr~ 1072 (1468)
|++-|++
T Consensus 609 E~e~L~~ 615 (698)
T KOG0978|consen 609 ELERLKR 615 (698)
T ss_pred HHHHHHH
Confidence 7777754
No 42
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.32 E-value=0.49 Score=60.32 Aligned_cols=335 Identities=28% Similarity=0.354 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHH
Q 041227 1033 DEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVL 1112 (1468)
Q Consensus 1033 dei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~l 1112 (1468)
.|-.-.++.+-.+..+++.-+..+...++.++.|.+-|-..|..|....+.+--+...|-.-.-|+|-.-.-|-.-|+.|
T Consensus 23 ~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dysel 102 (717)
T PF09730_consen 23 QESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSEL 102 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33344445555555555555555666667777777777777777776666666666666665555555555566666666
Q ss_pred HHH----------hhhhhhhhhhhhhhHHHHHHHHHhH---------HHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHH
Q 041227 1113 EAQ----------LGESEKGFSSLSMKVEALEEKYLSM---------LEEISSKEKALNLELDALLHENRKHKDKSVTEE 1173 (1468)
Q Consensus 1113 E~k----------L~eS~~~f~~~~k~Ve~LE~kl~s~---------le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~ 1173 (1468)
|.+ |++||--|..+=--|-.|++....+ |++|| |+.|..=|++| +.-|+++--+.++
T Consensus 103 EeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~ia--e~qleEALesl-~~EReqk~~LrkE- 178 (717)
T PF09730_consen 103 EEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIA--EKQLEEALESL-KSEREQKNALRKE- 178 (717)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHH-
Confidence 654 6777877877766677776665433 34444 45666666665 3445666555555
Q ss_pred HHHHH-hhhhhHHHhhhHHHHHHHHHHhhhhh--------hc-ccccch-------------------------------
Q 041227 1174 SLLNQ-MYMEKTVEAQNLQREVAHLTEQISAT--------YD-EKDGTH------------------------------- 1212 (1468)
Q Consensus 1174 ~llnq-~~~Ek~vevenLqrEv~~Lt~QiSat--------~d-ere~~~------------------------------- 1212 (1468)
|.+ |-.+-++-+.||.-.+..+ ..+.. .| +.....
T Consensus 179 --L~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l 254 (717)
T PF09730_consen 179 --LDQHLNIESISYLSNLAISLDGL--KFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSL 254 (717)
T ss_pred --HHHhcCccccccccchhhccccc--ccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcc
Confidence 333 5556665666665554433 00000 11 111111
Q ss_pred -hHHH-----HHHhhh-------hhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhH
Q 041227 1213 -SEAV-----LEVSHL-------RADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADH 1279 (1468)
Q Consensus 1213 -s~av-----~EvS~L-------rAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ 1279 (1468)
+|-+ -|+-.| =..|+.|-+.|++.|.++.+....|.. ...+|-+|+..|+|.+.=++ ++
T Consensus 255 v~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~----q~eki~~L~e~l~aL~~l~~----~k 326 (717)
T PF09730_consen 255 VSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSE----QQEKINRLTEQLDALRKLQE----DK 326 (717)
T ss_pred cchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhcc----ch
Confidence 1222 223333 246777888888999888888888764 44789999988888876211 11
Q ss_pred HHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHH
Q 041227 1280 EKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASF 1359 (1468)
Q Consensus 1280 ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl 1359 (1468)
+. .+-.+..+..... +- ...|+.. |.++++--.|....-.||..||.+|+.++.++..++..+
T Consensus 327 e~--------~~~~d~~~~~~s~-~d---~~~ye~D-----i~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~ 389 (717)
T PF09730_consen 327 EQ--------QSAEDSEKERDSH-ED---GDYYEVD-----INGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERY 389 (717)
T ss_pred hh--------hhhhhcccccccc-cc---cchhhhc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0001111111100 00 3445443 556677677888889999999999999998888888732
Q ss_pred HhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhH
Q 041227 1360 QILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAA 1413 (1468)
Q Consensus 1360 ~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a 1413 (1468)
+.++.-++++=..+.+++..++++. +.. ++++..||.||-+
T Consensus 390 ---~~ek~~~~~e~q~L~ekl~~lek~~-------re~---qeri~~LE~ELr~ 430 (717)
T PF09730_consen 390 ---KQEKDRLESEVQNLKEKLMSLEKSS-------RED---QERISELEKELRA 430 (717)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhh-------hhh---HHHHHHHHHHHHH
Confidence 3344444444444444444443332 222 5577777777644
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.30 E-value=0.078 Score=63.94 Aligned_cols=138 Identities=11% Similarity=0.183 Sum_probs=88.7
Q ss_pred hhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhh--hhccchhhhccchhhhhhHHHHHHHHHHHHHH
Q 041227 967 NLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTN--ERESSRLELENSATHAMSLQDEIRRLEAEMEA 1044 (1468)
Q Consensus 967 ~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~--E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~ 1044 (1468)
.++.++..+.+...+++-+|.+++.+-..+...+..+++.+.+++. .=..|.-.+.++.+.+..|.|.+..++.
T Consensus 238 ~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~---- 313 (562)
T PHA02562 238 ELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQH---- 313 (562)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHH----
Confidence 4445555555555666677888888888899999999999999964 5567788888888889999998875544
Q ss_pred hHHHHHHHHH---HHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhh
Q 041227 1045 QKVETKQKLQ---DMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEH 1108 (1468)
Q Consensus 1045 qk~~~kqk~q---e~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~ 1108 (1468)
|...+..++. ..+.++.+++.....++..=.++..+..+++.+-..|+.....|.....++...
T Consensus 314 ~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~ 380 (562)
T PHA02562 314 SLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEE 380 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Confidence 4444444443 445556666555555555444555555555555555555555555443333333
No 44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.29 E-value=0.071 Score=59.03 Aligned_cols=224 Identities=24% Similarity=0.243 Sum_probs=155.1
Q ss_pred HHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccch
Q 041227 885 IAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSV 964 (1468)
Q Consensus 885 ~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~ 964 (1468)
..+|+..+..+...+..+.....-....|..+..|+.....||+.++.+-..-
T Consensus 7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL--------------------------- 59 (237)
T PF00261_consen 7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERL--------------------------- 59 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------------------------
Confidence 34555555555555555555555556667777777777776666654433221
Q ss_pred hhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHH
Q 041227 965 NRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEA 1044 (1468)
Q Consensus 965 n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~ 1044 (1468)
.....++.+++..-.+.+-.+-.||.-+....++|..||.||..... ...+.+.
T Consensus 60 -~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~-------------------------~~ee~e~ 113 (237)
T PF00261_consen 60 -EEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKR-------------------------RAEEAER 113 (237)
T ss_dssp -CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-------------------------HHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHH
Confidence 13344566777777777888889999999999999999999975432 2223333
Q ss_pred hHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhh
Q 041227 1045 QKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFS 1124 (1468)
Q Consensus 1045 qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~ 1124 (1468)
-..+...|+..+...+-.+.+-++.+-.....|......+-.-+++|+.+-+..=..--.+..++..|.++|.++..++.
T Consensus 114 k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae 193 (237)
T PF00261_consen 114 KYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAE 193 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555567777778888889999999888888888899999999999999999999
Q ss_pred hhhhhHHHHHHHHHhHHHHhh-hhh--hHhhHHHHHHHHH
Q 041227 1125 SLSMKVEALEEKYLSMLEEIS-SKE--KALNLELDALLHE 1161 (1468)
Q Consensus 1125 ~~~k~Ve~LE~kl~s~le~is-sKE--k~l~~ELe~l~qE 1161 (1468)
..-+.|..||..+..+-.++. -|+ +.+..|||..|.+
T Consensus 194 ~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 194 FAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987776665 233 3466677777765
No 45
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.20 E-value=1.5 Score=57.09 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=23.5
Q ss_pred hhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhh
Q 041227 1076 KLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGE 1118 (1468)
Q Consensus 1076 kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~e 1118 (1468)
.+-++.+.+.+.+.-+++...++....-++++....++..+..
T Consensus 400 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 400 ELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666555555555555555555555555555444
No 46
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.13 E-value=0.4 Score=61.11 Aligned_cols=145 Identities=28% Similarity=0.285 Sum_probs=81.7
Q ss_pred HHHHHHhHHhHHHHhHHHHHHHHHHHHH-Hhhhcc----cC----CCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 041227 540 YEAEWRSRIAEKEENIVNLEAKLSEVLC-AQALKE----KS----FGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENL 610 (1468)
Q Consensus 540 ~e~e~~~kls~kE~eI~~L~~KL~~~~~-~~~~~~----~~----~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl 610 (1468)
-|+.|..+|.+.+.++..++..|+.+.. .+.+.. +. .-..--..|-.||-.+|.+=+-|=.||+||.+||+
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4666777777777777777777666543 111110 00 00001123455677788888888899999999999
Q ss_pred HHHHH---hhhhccccccCCCCCCCCCCCCccccchhHHHHHhHhHhhhHHHHHHHHHHHHhhhhcccccchHHHHHHhh
Q 041227 611 ALLFK---LKESGKDLLTGGASSHECPDNKSVFESESEVVQLKSQICKLEEELQERNALIERLSTYENRSDDLENQLQAF 687 (1468)
Q Consensus 611 ~l~~k---lkEs~~~~~~~~~s~~~~~~~~~~~~~es~~~~l~~q~~~leee~~~~~~~~~~~~~~~~k~~dlel~~~~f 687 (1468)
.|=.- ||.+- -++-++|-.|.+|+|+..-.+-=+++...
T Consensus 108 slQKqvs~Lk~sQ-----------------------vefE~~Khei~rl~Ee~~~l~~qlee~~r--------------- 149 (717)
T PF09730_consen 108 SLQKQVSVLKQSQ-----------------------VEFEGLKHEIKRLEEEIELLNSQLEEAAR--------------- 149 (717)
T ss_pred HHHHHHHHHHHhH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 98321 23311 24567888888888887666442222211
Q ss_pred hhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhhhh
Q 041227 688 KDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELFQG 724 (1468)
Q Consensus 688 k~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~~~ 724 (1468)
..--.|..|....+-|+..-..--+|+..|..|-+
T Consensus 150 --Lk~iae~qleEALesl~~EReqk~~LrkEL~~~~~ 184 (717)
T PF09730_consen 150 --LKEIAEKQLEEALESLKSEREQKNALRKELDQHLN 184 (717)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11112223333333344444455678888877655
No 47
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.11 E-value=1.5 Score=55.40 Aligned_cols=143 Identities=27% Similarity=0.316 Sum_probs=94.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhh-----hhHHhhc---------Cchhhhhhh---hHHHHh
Q 041227 1026 THAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEE-----CEYLKVA---------NPKLQATAE---GLIEEC 1088 (1468)
Q Consensus 1026 s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee-----~e~Lr~~---------N~kLQaT~e---~lieec 1088 (1468)
..|.+|...-.++.+++++.+.++++|..+.--++....+. |+.++.. =..|..-++ ..|++
T Consensus 534 kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~iee- 612 (786)
T PF05483_consen 534 KQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEE- 612 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH-
Confidence 35666777777788899999999999999998888776555 3333211 112333333 34444
Q ss_pred hhHHHhHHHHHHHHhh-------hhhhhHHHHHHhhhhhhhhhhhhhh-HHHHHHH--------------------HHhH
Q 041227 1089 SLLQKSNAELRKQKVN-------LHEHCAVLEAQLGESEKGFSSLSMK-VEALEEK--------------------YLSM 1140 (1468)
Q Consensus 1089 ~slQ~~~~eLr~qkle-------lh~~~t~lE~kL~eS~~~f~~~~k~-Ve~LE~k--------------------l~s~ 1140 (1468)
||..|.-|+++... +...+..|+-++...++.|-..... ...||.| ---+
T Consensus 613 --LqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~ 690 (786)
T PF05483_consen 613 --LQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKL 690 (786)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777776544 5566777778888888888766543 1112211 1235
Q ss_pred HHHhhhhhhHhhHHHHHHHHHhhhhcchhhh
Q 041227 1141 LEEISSKEKALNLELDALLHENRKHKDKSVT 1171 (1468)
Q Consensus 1141 le~issKEk~l~~ELe~l~qE~~~~~ek~~~ 1171 (1468)
+++|-.|=|.=.+|+=+|..-|+-|=+|+.-
T Consensus 691 q~EtdlrCQhKIAeMVALMEKHK~qYDkiVE 721 (786)
T PF05483_consen 691 QEETDLRCQHKIAEMVALMEKHKHQYDKIVE 721 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 6777777777888888888888888777743
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.10 E-value=0.05 Score=65.58 Aligned_cols=202 Identities=12% Similarity=0.100 Sum_probs=117.0
Q ss_pred HHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhh--
Q 041227 1176 LNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRME-- 1253 (1468)
Q Consensus 1176 lnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~E-- 1253 (1468)
+...+.+.-.++..|+.++..+..++...+.--++.....-..+-.+++....+.........++...+.++.+++.+
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~ 251 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444444555556666666666666665444333333333334455677777777777777777777777777777654
Q ss_pred -HHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHh
Q 041227 1254 -SQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTA 1332 (1468)
Q Consensus 1254 -s~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~ 1332 (1468)
+...++.+...++..+.+..++..+..-+. . +..=-.|+-. +..+.=.-..+.+.+..|+.|+..+.
T Consensus 252 ~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~----~------~~~Cp~C~~~--~~~~~~~~~~l~d~i~~l~~~l~~l~ 319 (562)
T PHA02562 252 DPSAALNKLNTAAAKIKSKIEQFQKVIKMYE----K------GGVCPTCTQQ--ISEGPDRITKIKDKLKELQHSLEKLD 319 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C------CCCCCCCCCc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777666655544332 0 0000011111 11111122245567777777777776
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhh
Q 041227 1333 QFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSE 1389 (1468)
Q Consensus 1333 ~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~se 1389 (1468)
...+++-.....++++.-...+++..+........++..+...+..+|..++....+
T Consensus 320 ~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~ 376 (562)
T PHA02562 320 TAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD 376 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 666666666666666666666666666666666666666666666666666666444
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.08 E-value=0.72 Score=58.84 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.1
Q ss_pred hHHhHHHHhHHHHHHHHHHHHHHh
Q 041227 546 SRIAEKEENIVNLEAKLSEVLCAQ 569 (1468)
Q Consensus 546 ~kls~kE~eI~~L~~KL~~~~~~~ 569 (1468)
+.|-.|+.||..|++||.+++++-
T Consensus 636 ~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 636 GQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567889999999999999999863
No 50
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.07 E-value=1.1 Score=55.51 Aligned_cols=106 Identities=25% Similarity=0.376 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCccchhhHHHHHHHHhhHHHHHHHHHHhhhchhHhhhhh
Q 041227 750 EMSRLLSELYEQIQLSLANLKKQQLLQQPSAFGSDKSIVPTSTDLTTQKERVEAILNNFMELKRLFEEKINLSEDEIQSK 829 (1468)
Q Consensus 750 ~~s~~~sel~~ql~~~l~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~qk~~ve~~l~~~~~l~~l~e~~~~~~e~e~~s~ 829 (1468)
++..-|..+-++|...+.+|. +.++..+.+.+..|-..+-.|-..|+. |+..+
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~--------------------~l~l~~~~~~~~~i~~~Id~Lyd~lek-------E~~A~ 305 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLE--------------------ELDLDEAEEKNEEIQERIDQLYDILER-------EVKAR 305 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHH--------------------hcChHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 456666777777777777777 445666666666666655555554432 32211
Q ss_pred hhHHHhhccccccccCCCCCCCccccccccccccccccccccccchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhH
Q 041227 830 KEITAVEANSDVDQNGLQGPDSNEIVLSTHIHGVDSQHMEFKSDVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQ 909 (1468)
Q Consensus 830 ~~~~~~~~~~~~~~~~l~~~~~~en~~~~~~~~~~~~~~e~e~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k 909 (1468)
..+. .....+...+..+...+..-..+|+.|+....+.+.|++.++..+
T Consensus 306 ~~ve-------------------------------k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~le 354 (569)
T PRK04778 306 KYVE-------------------------------KNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLE 354 (569)
T ss_pred HHHH-------------------------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHH
Confidence 1111 111123334444555555666777777777666666666666554
Q ss_pred HHHH
Q 041227 910 NELE 913 (1468)
Q Consensus 910 ~ElE 913 (1468)
.+++
T Consensus 355 keL~ 358 (569)
T PRK04778 355 KQLE 358 (569)
T ss_pred HHHH
Confidence 4443
No 51
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.02 E-value=2.1 Score=55.44 Aligned_cols=509 Identities=21% Similarity=0.261 Sum_probs=262.1
Q ss_pred cccccccccccccchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccch
Q 041227 861 HGVDSQHMEFKSDVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVA 940 (1468)
Q Consensus 861 ~~~~~~~~e~e~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~ 940 (1468)
+..+..+++||.++.++.+++....+|-..|-..+..+..-|..|+.++...|..|..|+...- .+-|
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~-------~~ek----- 148 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLE-------STEK----- 148 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHH-----
Confidence 4567888999999999999999999999888888888888888888888888887777754332 2222
Q ss_pred hhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhh
Q 041227 941 SKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLE 1020 (1468)
Q Consensus 941 skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~ 1020 (1468)
||.-|---+-.|.-+|---+.||+-++=.
T Consensus 149 ---------------------------------------------------en~~Lkye~~~~~keleir~~E~~~~~~~ 177 (769)
T PF05911_consen 149 ---------------------------------------------------ENSSLKYELHVLSKELEIRNEEREYSRRA 177 (769)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 22222222333333344444444433333
Q ss_pred hccchhh-------hhhHHHHHHHHHHHHH------HhHHHHHHHHHHHHHhHhhhhhhhh--HHhhcCchh----hhhh
Q 041227 1021 LENSATH-------AMSLQDEIRRLEAEME------AQKVETKQKLQDMQKRWLGVQEECE--YLKVANPKL----QATA 1081 (1468)
Q Consensus 1021 l~nS~s~-------~~~Lqdei~r~~~e~e------~qk~~~kqk~qe~q~~wse~Qee~e--~Lr~~N~kL----QaT~ 1081 (1468)
.+.+.-+ |..|.+|-+||+.-+- +-..-+|.-....-+ ++- -.|+.+..= ..+.
T Consensus 178 ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~-------~~~~~r~r~~~~~~~~~~~~~~ 250 (769)
T PF05911_consen 178 AEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGR-------DSGENRRRRSPSRPSSPHDFSP 250 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhcc-------ccccccCCCCCCcccccccccc
Confidence 3322211 2223333333333221 000111111110000 111 112333331 1122
Q ss_pred ---hhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHH---------------------
Q 041227 1082 ---EGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKY--------------------- 1137 (1468)
Q Consensus 1082 ---e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl--------------------- 1137 (1468)
..-..+-..|=.....+...+--|-+-.+.=..+|.-|+-.|++-.-++-.||..+
T Consensus 251 ~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~~s~~~~~~~s 330 (769)
T PF05911_consen 251 QNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELSSSQNTSNPPS 330 (769)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCc
Confidence 23344445555555555555666666777778889999999998888889999998
Q ss_pred HhHHHHhhhhh---------hHhhHHHHHHHHHhhhhcchhh-------hHHHHHHHhhhhhHHHhhhHHH--------H
Q 041227 1138 LSMLEEISSKE---------KALNLELDALLHENRKHKDKSV-------TEESLLNQMYMEKTVEAQNLQR--------E 1193 (1468)
Q Consensus 1138 ~s~le~issKE---------k~l~~ELe~l~qE~~~~~ek~~-------~~~~llnq~~~Ek~vevenLqr--------E 1193 (1468)
.....++..-. =+|.+|||.+ -+.++..+.. ....|.-=.+|||-+-+.+-.. .
T Consensus 331 ~~s~se~~~dd~~s~s~SWAsaLiseldqf--k~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~~~~~~~~~~~~~ 408 (769)
T PF05911_consen 331 LTSMSEDGNDDEGSCSDSWASALISELDQF--KNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSRDSSSPSSCSSSE 408 (769)
T ss_pred hhcccccCCCCCCcccchhHHHHhchHHHh--ccccccccccccCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 22333333221 1588999988 5555544443 4556777778888877653110 0
Q ss_pred HHHHHH-hhhhhhcccccch----------------hHHH---HHHhhhhhhhHHHHHHHHHHHhHhhhhhcchh-----
Q 041227 1194 VAHLTE-QISATYDEKDGTH----------------SEAV---LEVSHLRADKAVLEAALQEVQGKLKLSESNLG----- 1248 (1468)
Q Consensus 1194 v~~Lt~-QiSat~dere~~~----------------s~av---~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~----- 1248 (1468)
+..-.. -+..+. .++... +++| .+|+.++.-.-.++.++..++.-....-+...
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al~~~~~~~~~~~~~~~~~~~~ 487 (769)
T PF05911_consen 409 VDSDSSVTLESSS-KRESVLESDKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIALDSINNSSNCDDDSEEYESME 487 (769)
T ss_pred ccccccccccccc-cccccccchhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 000000 000000 011111 0111 23444443333444555555443332222222
Q ss_pred -hhhhhHHHHHHHHHHHHHHHhhhH---------H-----HHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHH
Q 041227 1249 -TLRMESQTKIQQLKSELAAARQNQ---------E-----VLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYE 1313 (1468)
Q Consensus 1249 -~l~~Es~~ki~~l~~~L~askqn~---------e-----mL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yE 1313 (1468)
++-..... ..+...+|+++..+- + -|..+...+.+.++.+..--++. + ..+..|.
T Consensus 488 ~sL~e~~~s-~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwI---l-s~~~SLq----- 557 (769)
T PF05911_consen 488 ASLVEESKS-MIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWI---L-SNCFSLQ----- 557 (769)
T ss_pred hhHHHHHHH-HHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH---H-HccchHH-----
Confidence 11101111 111222222221111 0 11122223333333332222211 1 1122222
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhh-----------HHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhh
Q 041227 1314 RLQLTEEISSLKVQLERTAQFQD-----------EVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKIST 1382 (1468)
Q Consensus 1314 rqq~~eE~s~LkvQlqk~~~lqd-----------Ev~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~ 1382 (1468)
.+..+.+.++.++.......- +...++..|..++.+|..|+..|.......+.++.+=.....+|..
T Consensus 558 --Dv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~e 635 (769)
T PF05911_consen 558 --DVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEE 635 (769)
T ss_pred --HHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 255666667766666444332 3345888999999999999999999999999998888888888887
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHH
Q 041227 1383 SQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKE-------DCLSR 1455 (1468)
Q Consensus 1383 ~q~~~seled~k~sk~sleeKl~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~e-------e~~~r 1455 (1468)
++.-+ +..+.++-.++.-|.-+ -.-.++ +..-+.-+.-++.+++.||..|+.|.+ |+..+
T Consensus 636 Lq~eL---~~~keS~s~~E~ql~~~---~e~~e~-------le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~k 702 (769)
T PF05911_consen 636 LQSEL---ESAKESNSLAETQLKAM---KESYES-------LETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAK 702 (769)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHH---HHHHHH-------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 77544 45555555555443322 112222 222233334445667778887777765 45577
Q ss_pred HHHHHHHHHhhc
Q 041227 1456 AQAIEEELKQTK 1467 (1468)
Q Consensus 1456 ~q~lE~elk~~k 1467 (1468)
...||++|...+
T Consensus 703 c~~Le~el~r~~ 714 (769)
T PF05911_consen 703 CRELEEELERMK 714 (769)
T ss_pred HHHHHHHHHhhh
Confidence 778888885443
No 52
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.79 E-value=3 Score=55.64 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHH
Q 041227 1035 IRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEA 1114 (1468)
Q Consensus 1035 i~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~ 1114 (1468)
..++-++-++++.+++..+.+.++.+..+|.....++-++.|+-++.-.|.+---.+..-.++.++...-..+.|..|.+
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~ 578 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQ 578 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHH
Confidence 34444566677777777777777766666655555555555443333333333333333444444444444455555655
Q ss_pred Hhh
Q 041227 1115 QLG 1117 (1468)
Q Consensus 1115 kL~ 1117 (1468)
.+.
T Consensus 579 ~~e 581 (1317)
T KOG0612|consen 579 ELE 581 (1317)
T ss_pred Hhh
Confidence 555
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=4 Score=54.36 Aligned_cols=225 Identities=23% Similarity=0.306 Sum_probs=137.9
Q ss_pred cchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHH
Q 041227 873 DVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIM 952 (1468)
Q Consensus 873 ~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~ 952 (1468)
.|..+...+..-.-....+...+...++.+..+|+.-.+|+.+++.+..+...+-+.++ .+-.-|.
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~--------------~l~~~i~ 844 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIE--------------YLESQIA 844 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 45555555555555555666666666677788888888888888888777665533221 1112222
Q ss_pred HHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHH-----H-HHHhhHHHHHhhhhhhhccchhhhccchh
Q 041227 953 VLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQL-----S-ERICGLEAQLRYLTNERESSRLELENSAT 1026 (1468)
Q Consensus 953 ~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qL-----s-erisgLEaql~~lt~E~es~~l~l~nS~s 1026 (1468)
.+..-++..+.-++.| .+++..|++|+.|..++ . ++|.+|-+++-.++.|+ ++.. +.
T Consensus 845 ~~E~~~~k~~~d~~~l-----------~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~----~q~q--k~ 907 (1293)
T KOG0996|consen 845 ELEAAVLKKVVDKKRL-----------KELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEK----VQAQ--KD 907 (1293)
T ss_pred HHHHHhhhccCcHHHH-----------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchh----hHHh--HH
Confidence 2222222222222222 34556788888888777 5 77888887777777764 2222 22
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHH---HHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHh
Q 041227 1027 HAMSLQDEIRRLEAEMEAQKVETK---QKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKV 1103 (1468)
Q Consensus 1027 ~~~~Lqdei~r~~~e~e~qk~~~k---qk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qkl 1103 (1468)
-|..+.+.|..+.+..-.+.+-++ +.++..|...++...+|+-++ .+|..|-...-.++.-+.
T Consensus 908 kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e--------------~e~~~L~e~~~~~~~k~~ 973 (1293)
T KOG0996|consen 908 KVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTE--------------KELDDLTEELKGLEEKAA 973 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhHHHHH
Confidence 234444444444444433333333 345666777777777666554 344445445555666677
Q ss_pred hhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHH
Q 041227 1104 NLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLE 1142 (1468)
Q Consensus 1104 elh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le 1142 (1468)
++.++++.-++-+.+.+....+....+++++..+..+.-
T Consensus 974 E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen 974 ELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKA 1012 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888999999999999999999999888876654
No 54
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.72 E-value=0.00038 Score=86.93 Aligned_cols=303 Identities=26% Similarity=0.291 Sum_probs=0.0
Q ss_pred hhhhhhhhcchhhhh------hhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHH
Q 041227 969 ESKSLELESSKHEME------VHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEM 1042 (1468)
Q Consensus 969 e~k~~eles~K~elE------~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~ 1042 (1468)
.+.-.+++.+|.-|+ ..+-.|+..|..|-+++.-||.|++-... .+-+++.+
T Consensus 311 ~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~----~~~qle~~------------------ 368 (713)
T PF05622_consen 311 DKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARA----LKSQLEEY------------------ 368 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHH------------------
Confidence 333344455554333 67889999999999999999999975431 11222222
Q ss_pred HHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhh-----h--hh---HHH
Q 041227 1043 EAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLH-----E--HC---AVL 1112 (1468)
Q Consensus 1043 e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh-----~--~~---t~l 1112 (1468)
..|..++++++-+++.+--....++..|+.-+..|+.-.+.++.+..+|+..+.+|+--...-. + .. .-|
T Consensus 369 k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l 448 (713)
T PF05622_consen 369 KKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNL 448 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccch
Confidence 2333445555555555544444455555555555555555566666666555555532111000 0 00 001
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHH
Q 041227 1113 EAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQR 1192 (1468)
Q Consensus 1113 E~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqr 1192 (1468)
-+++ ...+...++..||..-..+...+..-+..-..+|.+.+.+......++...- +-..++ +..|+.
T Consensus 449 ~~El-----~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~----~~~~~~---~~~lq~ 516 (713)
T PF05622_consen 449 SAEL-----NPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEEN----REANEK---ILELQS 516 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhc-----cchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHH
Confidence 1111 1123344455566544444333332222223445555555555555553331 112222 333444
Q ss_pred HHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhH----HHHHHHHHHHHHHH
Q 041227 1193 EVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMES----QTKIQQLKSELAAA 1268 (1468)
Q Consensus 1193 Ev~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es----~~ki~~l~~~L~as 1268 (1468)
+|+.|...+... ..-.-++ +.++.+..+--..+.+++..+..-...++++..+. ..||..|-..|..
T Consensus 517 qle~lq~~l~~~----~~~~~d~----~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~- 587 (713)
T PF05622_consen 517 QLEELQKSLQEQ----GSKSEDS----SELKQKLEEHLEKLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQK- 587 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH----hhhcccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-
Confidence 555444333211 1111111 12222111111233344444444445555544333 4456666655542
Q ss_pred hhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHH
Q 041227 1269 RQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLER 1330 (1468)
Q Consensus 1269 kqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk 1330 (1468)
..++|. ..=+.||-.-+|.|..|..|+-|.. +...|+..|+-|++.
T Consensus 588 -k~~e~~--------~~eer~k~~lekak~vi~~Ld~k~~-------~~~~e~~~L~~ql~e 633 (713)
T PF05622_consen 588 -KEEEMR--------AMEERYKKYLEKAKEVIKTLDPKQN-------PSSPEIQALKKQLQE 633 (713)
T ss_dssp --------------------------------------------------------------
T ss_pred -hHHHHH--------hHHHHHHHHHHHHHHHhhccChhcc-------CChHHHHHHHHHHHH
Confidence 223442 2223456666788899999999988 366777777776644
No 55
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.70 E-value=0.85 Score=53.07 Aligned_cols=252 Identities=20% Similarity=0.258 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhh
Q 041227 1047 VETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSL 1126 (1468)
Q Consensus 1047 ~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~ 1126 (1468)
..+...+...+++...++-+-+.++..+.+...+-+-|-.=|--||+.|-.++. +-...+..-+.+-.+...+|
T Consensus 39 k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lke---E~~~~~~eee~kR~el~~kF--- 112 (309)
T PF09728_consen 39 KRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKE---ESKRRAREEEEKRKELSEKF--- 112 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---
Confidence 345667778888888888899999988889888888888889999999966663 33334445555444444444
Q ss_pred hhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhh-----------hHHHHHHHhhhhhHHHhhhHHHHHH
Q 041227 1127 SMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSV-----------TEESLLNQMYMEKTVEAQNLQREVA 1195 (1468)
Q Consensus 1127 ~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~-----------~~~~llnq~~~Ek~vevenLqrEv~ 1195 (1468)
...+.||..+=..-...=..+.++|....+||. +.+.++.+..+|--.---.|++..+
T Consensus 113 -----------q~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 113 -----------QATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQE 181 (309)
T ss_pred -----------HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333334433322222233334444444444442 1112222222221111122222211
Q ss_pred HHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHH
Q 041227 1196 HLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVL 1275 (1468)
Q Consensus 1196 ~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL 1275 (1468)
.....-.-...+++.+--++. .|+.+..-=+ ++..||. -|-.|...+.+.|+-|-.=-...
T Consensus 182 ~~~~e~~k~~~~~~~~l~~~~-~~~~~~~~E~-------~Lr~QL~-----------~Y~~Kf~efq~tL~kSNe~F~tf 242 (309)
T PF09728_consen 182 EAEQEKEKAKQEKEILLEEAA-QVQTLKETEK-------ELREQLN-----------LYSEKFEEFQDTLNKSNEVFETF 242 (309)
T ss_pred HHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHH-------HHHHHHH-----------HHHHHHHHHHHHHHHhHHHHHHH
Confidence 111111111111110000111 2222221111 1222222 45566666777777777766777
Q ss_pred HhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhh
Q 041227 1276 MADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQF 1334 (1468)
Q Consensus 1276 ~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~l 1334 (1468)
..+.++|.+=+...-..-..+++....=-..|-.---||...-+++..++.|++++..|
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~L 301 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKL 301 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766554443334444333333333444445666666666666666665543
No 56
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.67 E-value=3.5 Score=52.96 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=79.3
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhccccccCCCCCCCCCCCCccccchhHHHHHhHhHhh
Q 041227 576 FGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLALLFKLKESGKDLLTGGASSHECPDNKSVFESESEVVQLKSQICK 655 (1468)
Q Consensus 576 ~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~~~~~~~~~s~~~~~~~~~~~~~es~~~~l~~q~~~ 655 (1468)
+.-.+|++=++. +.|+..+-+-|+=+.+|--|.++|...+-+--+ +.. ++---+.+.+..-|. .-+.--+.-
T Consensus 25 p~qvidlnNes~-edlk~r~L~aeniiqdlrserdalhe~lvdkag-lne----Sviie~sk~vstqet--riyRrdv~l 96 (1265)
T KOG0976|consen 25 PFQVIDLNNESH-EDLKKRLLDAENIIQDLRSERDALHESLVDKAG-LNE----SVIIEQSKKVSTQET--RIYRRDVNL 96 (1265)
T ss_pred Cceeeeccccch-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh-ccc----hhhhhhcchhhHHHH--HHHHHHHHH
Confidence 455666665554 456666777777778888888888776654221 000 111111122211111 111222233
Q ss_pred hHHHHHHHHHHHHhhhhcccccchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHh
Q 041227 656 LEEELQERNALIERLSTYENRSDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLE 720 (1468)
Q Consensus 656 leee~~~~~~~~~~~~~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~ 720 (1468)
+|+.++..+. .+..|+++|..||.+.+...+....+++.++.--.+++.-+-++-.|.+.|+
T Consensus 97 lEddlk~~~s---QiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 97 LEDDLKHHES---QIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4555555543 4567889999999999999888888887777777777766666666666663
No 57
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.61 E-value=3.8 Score=52.64 Aligned_cols=392 Identities=20% Similarity=0.231 Sum_probs=202.8
Q ss_pred hhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHH
Q 041227 969 ESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVE 1048 (1468)
Q Consensus 969 e~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~ 1048 (1468)
|-...++++.=..|-+...+||-|..-|-.-|+|++.+++.- +.+++|+.+.+-.|.+++.-
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~-------etelE~~~srlh~le~eLsA----------- 159 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKEN-------EIEIENLNSRLHKLEDELSA----------- 159 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHhh-----------
Confidence 333445555666666778888999999999999999998864 34455666666556555542
Q ss_pred HHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHH-----------Hhhhhhh----hHHHH
Q 041227 1049 TKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQ-----------KVNLHEH----CAVLE 1113 (1468)
Q Consensus 1049 ~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~q-----------klelh~~----~t~lE 1113 (1468)
|--++|...-..-.-|+.|-.-|..+|... +|-+.+-+.+.++=++ -+++|.- -.+++
T Consensus 160 ---k~~eIf~~~~~L~nk~~~lt~~~~q~~tkl----~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ 232 (1265)
T KOG0976|consen 160 ---KAHDIFMIGEDLHDKNEELNEFNMEFQTKL----AEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLK 232 (1265)
T ss_pred ---hhHHHHHHHHHHhhhhhHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 333444444333333444433333332211 1112222222221111 1122210 00111
Q ss_pred HHh-hhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHH
Q 041227 1114 AQL-GESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQR 1192 (1468)
Q Consensus 1114 ~kL-~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqr 1192 (1468)
... =.|++-|+.-.+ |-.||+++-- -.|.....+-.+-+--+..-...|..=-.+|.--|.-||+
T Consensus 233 ev~QLss~~q~ltp~r-------k~~s~i~E~d-------~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qe 298 (1265)
T KOG0976|consen 233 EVMQLSSQKQTLTPLR-------KTCSMIEEQD-------MDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQE 298 (1265)
T ss_pred HHHHHHHhHhhhhhHh-------hhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 100 012333332222 1223333221 1122221111111111112223556666678888999999
Q ss_pred HHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhH
Q 041227 1193 EVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQ 1272 (1468)
Q Consensus 1193 Ev~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~ 1272 (1468)
|+..|..-.-.....-+.++-=.=.||-.|-+.||-+.-+|-+. +-|+.|+-+-|+.-...+
T Consensus 299 eLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa------------------rrk~egfddk~~eLEKkr 360 (1265)
T KOG0976|consen 299 ELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA------------------RRKAEGFDDKLNELEKKR 360 (1265)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHhhcchhHHHHHHHHHH
Confidence 99988766666666666666656678888999999888777554 567777777778777888
Q ss_pred HHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 041227 1273 EVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFEN 1352 (1468)
Q Consensus 1273 emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek 1352 (1468)
-|+-.|+-++..+.+++. -++.. |+.---||||.|+|. |.-+-..++...---+.|++|.+|.-..
T Consensus 361 d~al~dvr~i~e~k~nve----~elqs-------L~~l~aerqeQidel---Kn~if~~e~~~~dhe~~kneL~~a~ekl 426 (1265)
T KOG0976|consen 361 DMALMDVRSIQEKKENVE----EELQS-------LLELQAERQEQIDEL---KNHIFRLEQGKKDHEAAKNELQEALEKL 426 (1265)
T ss_pred HHHHHhHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHH---HHhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 898888888877776553 22222 222334566776653 3333333333333446777777776666
Q ss_pred HHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHH----hhcCchhHHHhhhhhhHHHhhHH
Q 041227 1353 ERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVL----RLEGDLAAIEALGSQEAALKNEL 1428 (1468)
Q Consensus 1353 ~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~----rle~dl~a~ea~~~~~aelk~el 1428 (1468)
..|.+.+-++--.|.-.|.=| +-.+.-+|.-|+-+.+++ -|+.-|--.. -+--|+
T Consensus 427 d~mgthl~mad~Q~s~fk~Lk--------------e~aegsrrraIeQcnemv~rir~l~~sle~qr-------KVeqe~ 485 (1265)
T KOG0976|consen 427 DLMGTHLSMADYQLSNFKVLK--------------EHAEGSRRRAIEQCNEMVDRIRALMDSLEKQR-------KVEQEY 485 (1265)
T ss_pred HHHhHHHHHHHHHHhhHHHHH--------------HhhhhhHhhHHHHHHHHHHHHHHHhhChhhhc-------chHHHH
Confidence 666555555544444443332 333333333333333322 2222222222 222334
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 041227 1429 AQIRRENSQFQRRIKCLEKEKEDC 1452 (1468)
Q Consensus 1429 ~ri~r~n~e~q~ki~~le~E~ee~ 1452 (1468)
.-+|-+|.--..||.-+++++++-
T Consensus 486 emlKaen~rqakkiefmkEeiQet 509 (1265)
T KOG0976|consen 486 EMLKAENERQAKKIEFMKEEIQET 509 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555665666777777776654
No 58
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.58 E-value=4.5 Score=53.08 Aligned_cols=399 Identities=21% Similarity=0.253 Sum_probs=234.4
Q ss_pred hhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhhhhhh
Q 041227 891 LKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNRNLES 970 (1468)
Q Consensus 891 Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~~le~ 970 (1468)
+.+.+..-+++++.+-+...||++.+..|-++|-|+..+---+.+.-.--..-.+|++..|..-.-.-..-.-.+..++.
T Consensus 256 ~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 256 YIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 33344446778999999999999999999999999986543333332111222356666554322222222223455555
Q ss_pred hhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHH
Q 041227 971 KSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETK 1050 (1468)
Q Consensus 971 k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~k 1050 (1468)
+|.+-+--=...+-.-..|-.+-..+..||..|+.+.+.|-.=.- -.-|.-+-.-.=+=+..+|. .++
T Consensus 336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqg-r~sqFssk~eRDkwir~ei~-----------~l~ 403 (1200)
T KOG0964|consen 336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQG-RYSQFSSKEERDKWIRSEIE-----------KLK 403 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cccccCcHHHHHHHHHHHHH-----------HHH
Confidence 554433222233345566777778899999999988877642110 00000000111111222222 222
Q ss_pred HHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhH
Q 041227 1051 QKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKV 1130 (1468)
Q Consensus 1051 qk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~V 1130 (1468)
+-..+.-.+-.-.|-|-+-++. --.-.-++...|.-+.++.+-+--++|...+++=+++++++.+=-...+.=
T Consensus 404 ~~i~~~ke~e~~lq~e~~~~e~-------~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE 476 (1200)
T KOG0964|consen 404 RGINDTKEQENILQKEIEDLES-------ELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREE 476 (1200)
T ss_pred HHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222211 111233455566667778888888899999999999999988877777777
Q ss_pred HHHHHHHHhHHHHhhhhhhHhhHHHH----HHH-------------------HHhhhhcchhhh----------------
Q 041227 1131 EALEEKYLSMLEEISSKEKALNLELD----ALL-------------------HENRKHKDKSVT---------------- 1171 (1468)
Q Consensus 1131 e~LE~kl~s~le~issKEk~l~~ELe----~l~-------------------qE~~~~~ek~~~---------------- 1171 (1468)
-.|--.+..+.+|++..++.|..=.. +=+ -|..+-..+|..
T Consensus 477 ~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVd 556 (1200)
T KOG0964|consen 477 KKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVD 556 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEec
Confidence 77888888889999999999876544 222 223333334322
Q ss_pred ----HHHHHHHhhhhhHHHh-------------------------hhH------HHHHHHHH------------------
Q 041227 1172 ----EESLLNQMYMEKTVEA-------------------------QNL------QREVAHLT------------------ 1198 (1468)
Q Consensus 1172 ----~~~llnq~~~Ek~vev-------------------------enL------qrEv~~Lt------------------ 1198 (1468)
|--.|++||..+-=+| ..| ..=+.|..
T Consensus 557 ndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~ 636 (1200)
T KOG0964|consen 557 NDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKK 636 (1200)
T ss_pred ccHHHHHHHHHHHhccCCeeEEeecccCchhhccCCCCCCccchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHh
Confidence 2234566665554111 001 11111111
Q ss_pred ----------Hh------hhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhh----------hh
Q 041227 1199 ----------EQ------ISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTL----------RM 1252 (1468)
Q Consensus 1199 ----------~Q------iSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l----------~~ 1252 (1468)
+| |.+-|....+.-++++--|-.-|-.-++|+..|.++...++-.-.+++.+ +.
T Consensus 637 ~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~ 716 (1200)
T KOG0964|consen 637 HELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRN 716 (1200)
T ss_pred cCCCeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11 22334444556677787787778888888888877776666554444433 23
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccc
Q 041227 1253 ESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLK 1308 (1468)
Q Consensus 1253 Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk 1308 (1468)
-.+..+..|.+++++.++---|+.---++-.+.|+.++-+-.++..+.+-+|..+-
T Consensus 717 ~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~ 772 (1200)
T KOG0964|consen 717 AFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELG 772 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 45667778888888888877777777778888999999999999999988886654
No 59
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=2.2 Score=53.21 Aligned_cols=255 Identities=23% Similarity=0.204 Sum_probs=127.0
Q ss_pred hhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHH---HHhHHHHHHHHHHHHHhHhhh
Q 041227 987 HELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEM---EAQKVETKQKLQDMQKRWLGV 1063 (1468)
Q Consensus 987 s~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~---e~qk~~~kqk~qe~q~~wse~ 1063 (1468)
+.|++.+--++.-|.+|+++.+.|.+=-. +.+-..+....|..+.++|+... .+-...+++|-+.|-+.+..+
T Consensus 224 ~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l 299 (581)
T KOG0995|consen 224 HRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML 299 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34566666666777777776666654333 44455566667777777776543 455566667777777777666
Q ss_pred hhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhH----H-------HHHHhhhhhhhhhhhhhhHHH
Q 041227 1064 QEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCA----V-------LEAQLGESEKGFSSLSMKVEA 1132 (1468)
Q Consensus 1064 Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t----~-------lE~kL~eS~~~f~~~~k~Ve~ 1132 (1468)
++||+ -..+||..||..+.+||+|. ++.+..+ . |...|...+..-....+.|-.
T Consensus 300 ~~Eie--------------~kEeE~e~lq~~~d~Lk~~I-e~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 300 KSEIE--------------EKEEEIEKLQKENDELKKQI-ELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHH--------------HHHHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66654 35667777777777777653 3332211 1 222222222222222222222
Q ss_pred HHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhh--HHHHHH-Hh-hhhhHHHhhhHHHHHHHHHHhhhhhhccc
Q 041227 1133 LEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVT--EESLLN-QM-YMEKTVEAQNLQREVAHLTEQISATYDEK 1208 (1468)
Q Consensus 1133 LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~--~~~lln-q~-~~Ek~vevenLqrEv~~Lt~QiSat~der 1208 (1468)
++-++. ..--+++..|..-..+--||.. +++..| .+ +..=...+-.+.-=|.-+ +-.-+|+-
T Consensus 365 ~~l~~~-----------~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~---l~el~~ei 430 (581)
T KOG0995|consen 365 LKLEIE-----------DFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPL---LKELLDEI 430 (581)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHH---HHHHHHHH
Confidence 222222 2222333333333333333322 233333 00 000000000011000000 11112222
Q ss_pred ccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHH
Q 041227 1209 DGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEV 1274 (1468)
Q Consensus 1209 e~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~em 1274 (1468)
..---.+..+-.+|--++-.+.+-..+.+.-++-++.+|..+...++.+.+.--++..+.+.-.|.
T Consensus 431 ~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~ 496 (581)
T KOG0995|consen 431 SEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEK 496 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223345666667777777777777777777777777777777777777777766666666655443
No 60
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.35 E-value=0.39 Score=53.28 Aligned_cols=86 Identities=31% Similarity=0.451 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHH------------HHhhhhHHHHHHHhhhhhHHHHHHHHHH
Q 041227 1279 HEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLT------------EEISSLKVQLERTAQFQDEVLSLKKLLN 1346 (1468)
Q Consensus 1279 ~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~------------eE~s~LkvQlqk~~~lqdEv~~lk~sL~ 1346 (1468)
++++...++.||.||+.||..+.+...+++-.+ .|-|.+ +||..++ ...+.|+.+|+..|.
T Consensus 99 yek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~e-qry~aLK~hAeekL~~ANeei~~v~------~~~~~e~~aLqa~lk 171 (207)
T PF05010_consen 99 YEKQKEVIEGYKKNEETLKKCIEEYEERLKKEE-QRYQALKAHAEEKLEKANEEIAQVR------SKHQAELLALQASLK 171 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHH
Confidence 445666666777777777777777666666222 333333 3444333 346789999999999
Q ss_pred HHhhhhHHHHHHHHhhhhchHHHHH
Q 041227 1347 EAKFENERLEASFQILSGDYEELKA 1371 (1468)
Q Consensus 1347 ~~kfek~rLe~sl~~~S~e~eeLka 1371 (1468)
-.+-...-|+.+|.-.+.++++|-.
T Consensus 172 k~e~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 172 KEEMKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998854
No 61
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.29 E-value=0.046 Score=57.25 Aligned_cols=128 Identities=29% Similarity=0.306 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhc
Q 041227 877 TAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHR 956 (1468)
Q Consensus 877 l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~s 956 (1468)
...++-...++-|.|+..+..-+++++..+-.+..+....-.-+++..-|++.|+.|..+ ++++..||.-+.+
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~e-------l~~L~~EL~~l~s 80 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSE-------LNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 345667788999999999999999999999888888888888888888888888888777 5555556655555
Q ss_pred ccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHH----HhhHHHHHhhhh
Q 041227 957 DMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSER----ICGLEAQLRYLT 1011 (1468)
Q Consensus 957 s~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLser----isgLEaql~~lt 1011 (1468)
-.+.-.-.-...-.+|.+|++...+++.||..+|++.+++.+. +.-|-+|+++|+
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5444333333444569999999999999999999998887654 556667776664
No 62
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=1.4 Score=54.70 Aligned_cols=244 Identities=19% Similarity=0.242 Sum_probs=140.4
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhh-hhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHH------HH
Q 041227 1186 EAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSH-LRADKAVLEAALQEVQGKLKLSESNLGTLRMESQT------KI 1258 (1468)
Q Consensus 1186 evenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~-LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~------ki 1258 (1468)
++++|+..-..|-+||.+. ++.--.-+..+|+.. |+-|.-|..+.......+..+++..|+.|..|-+. +|
T Consensus 236 ~ie~l~~~n~~l~e~i~e~--ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~l 313 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMINER--EKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKL 313 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH--hcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777732 333444566788876 99999999999999999999999999999887664 47
Q ss_pred HHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHH
Q 041227 1259 QQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEV 1338 (1468)
Q Consensus 1259 ~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv 1338 (1468)
+.-.++|-..=.||..=.+|.+.|..=.+.++-+-++...-+.+|=-++...+.+-+-..+ .++-++++..++-+.|
T Consensus 314 q~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~---~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 314 QKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFK---ELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 7888999888888888788887776544444433344433333333333322222222333 3344444444444433
Q ss_pred HH--HHHHHHHHhhh---------------hHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHH
Q 041227 1339 LS--LKKLLNEAKFE---------------NERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQ 1401 (1468)
Q Consensus 1339 ~~--lk~sL~~~kfe---------------k~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sle 1401 (1468)
.- ..++.| ..+. +-.|...+..++++.-+-. -+..++|++++++.+-=-.+++..
T Consensus 391 ~l~~~~~~~n-~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~-------~~~~tLq~~~~~~~~~i~E~~~~l 462 (581)
T KOG0995|consen 391 KLGIAENSKN-LERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAE-------NELETLQEHFSNKASTIEEKIQIL 462 (581)
T ss_pred HHHHHHHhcc-CCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 333333 0000 1122233333333332222 233445555554443222222211
Q ss_pred HHHHhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041227 1402 EKVLRLEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEELKQ 1465 (1468)
Q Consensus 1402 eKl~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~elk~ 1465 (1468)
.. +. .++.-.++.|+++++.-+.+..+|..-++.||++|.+
T Consensus 463 ~~--------------------~~---~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~ 503 (581)
T KOG0995|consen 463 GE--------------------IE---LELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLN 503 (581)
T ss_pred HH--------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 2334456678888888888888888888888888754
No 63
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.97 E-value=0.0034 Score=78.69 Aligned_cols=108 Identities=27% Similarity=0.352 Sum_probs=0.0
Q ss_pred HhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH---HhHhhhhhhhhHHhhcCc-
Q 041227 1000 ICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQ---KRWLGVQEECEYLKVANP- 1075 (1468)
Q Consensus 1000 isgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q---~~wse~Qee~e~Lr~~N~- 1075 (1468)
...|-+|++.|.+|..-..-++++.+..+..++.+|..+ +|+.++.+ +..-..++|-+.||-..-
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L-----------~q~~~eL~~~A~~a~~LrDElD~lR~~a~r 309 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDEL-----------RQENEELQAEAREARALRDELDELREKADR 309 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333445555555554443334444444444444444333 33333333 333344566677765444
Q ss_pred --hhhhhhhhH---HHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhh
Q 041227 1076 --KLQATAEGL---IEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGE 1118 (1468)
Q Consensus 1076 --kLQaT~e~l---ieec~slQ~~~~eLr~qklelh~~~t~lE~kL~e 1118 (1468)
||.+++++. +++...|.+.+.+|+.++-.+....+.||.+|+-
T Consensus 310 ~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 310 ADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666643 5666777777777777777777777888887754
No 64
>PRK11637 AmiB activator; Provisional
Probab=95.76 E-value=0.68 Score=55.29 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=75.7
Q ss_pred hhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhH
Q 041227 967 NLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQK 1046 (1468)
Q Consensus 967 ~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk 1046 (1468)
.+..++.++......++.-|..+..+.-++...|..|+.+|..++..-....-++......+..++.+|..++...+.++
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666777777777778888888888888888888888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 041227 1047 VETKQKLQDMQK 1058 (1468)
Q Consensus 1047 ~~~kqk~qe~q~ 1058 (1468)
..+++-+..|++
T Consensus 124 ~~l~~rlra~Y~ 135 (428)
T PRK11637 124 RLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHH
Confidence 999999988887
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.66 E-value=7.7 Score=49.40 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=97.7
Q ss_pred HHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhh
Q 041227 887 EIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNR 966 (1468)
Q Consensus 887 ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~ 966 (1468)
+++.|...+..+-++.+.|-+...+.|.+|.+|+.....+.++..-..
T Consensus 95 ElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~-------------------------------- 142 (617)
T PF15070_consen 95 ELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQ-------------------------------- 142 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence 455566666666666777777778889999999888887766552211
Q ss_pred hhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhH
Q 041227 967 NLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQK 1046 (1468)
Q Consensus 967 ~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk 1046 (1468)
+-+..++|-| .-||.--.-|.+|-+++..|+--...||+++-...-.+..-.-+...|+.+..+++..+..-+
T Consensus 143 ---kLLe~lqsdk----~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 143 ---KLLEQLQSDK----ATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred ---HHHhhhcccc----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1134466666 346666778999999999999999999999976666666666666789898888888888888
Q ss_pred HHHHHHHHHHHH
Q 041227 1047 VETKQKLQDMQK 1058 (1468)
Q Consensus 1047 ~~~kqk~qe~q~ 1058 (1468)
.-++-|=+++|.
T Consensus 216 e~le~K~qE~~~ 227 (617)
T PF15070_consen 216 EKLELKSQEAQS 227 (617)
T ss_pred HHHHhhhHHHHH
Confidence 777777666654
No 66
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.61 E-value=12 Score=49.16 Aligned_cols=234 Identities=21% Similarity=0.268 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccccccCh----hHHHHHHHHHHh
Q 041227 314 DLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKFQARDT----DKKINELEDEIK 389 (1468)
Q Consensus 314 ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~e~eD~----~~lleELrdEL~ 389 (1468)
|+-||-|+.+.| |...|-+||-.+++=-|.|-.++|=||.-..+ . |+|. .+..+-|++
T Consensus 314 EmaTldKEmAEE--RaesLQ~eve~lkEr~deletdlEILKaEmee----k---------G~~~~~~ss~qfkqlEq--- 375 (1243)
T KOG0971|consen 314 EMATLDKEMAEE--RAESLQQEVEALKERVDELETDLEILKAEMEE----K---------GSDGQAASSYQFKQLEQ--- 375 (1243)
T ss_pred HHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c---------CCCCcccchHHHHHHHH---
Confidence 456677777765 55677888888888888888888888865543 1 2222 223333332
Q ss_pred hhhhhchhHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhchhhhhHHHHHHHHhhcccCCCCC
Q 041227 390 FQKESNANLAIQLNKTQESNIELISILQELEETLAKQKMEIEDLSKMKSEFEEVVGDSKQINTAKQILVKKRRDTSCDSD 469 (1468)
Q Consensus 390 yEKE~NaNL~LQLqKTQESN~ELVlaVQDLEEmLEqk~~EIs~LS~~~~e~dd~~~d~~q~~~~~~~lVK~~~da~c~~~ 469 (1468)
-|+-|+--|=++.+=|+.=-..-|-|-.-+|.++-|++.|-.....+.-
T Consensus 376 ----qN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr--------------------------- 424 (1243)
T KOG0971|consen 376 ----QNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSR--------------------------- 424 (1243)
T ss_pred ----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------------
Confidence 2444444444555555554455555556677777777766333221111
Q ss_pred CCCccccccccchhhhhhcccchhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHhHHh
Q 041227 470 QEGSIVEHPIRDLNAKIEQQDDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAEWRSRIA 549 (1468)
Q Consensus 470 ~e~s~lE~kI~dL~~eIEl~D~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e~~~kls 549 (1468)
.+...|-+|.||.+-|.-. - --|-=.+||.+.+-||+-+|-.||++..+.. .-+.+..|+..-. +.---
T Consensus 425 -~~d~aEs~iadlkEQVDAA-l-GAE~MV~qLtdknlnlEekVklLeetv~dlE----alee~~EQL~Esn----~ele~ 493 (1243)
T KOG0971|consen 425 -ELDQAESTIADLKEQVDAA-L-GAEEMVEQLTDKNLNLEEKVKLLEETVGDLE----ALEEMNEQLQESN----RELEL 493 (1243)
T ss_pred -HHHHHHHHHHHHHHHHHHh-h-cHHHHHHHHHhhccCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHHH
Confidence 1122233344444433220 0 0123367888888899999988888776544 2222222221110 00112
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 041227 550 EKEENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLAL 612 (1468)
Q Consensus 550 ~kE~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l 612 (1468)
+.-+||..+.--..++..--++.. -... |+--=|.-.+.-|+-|.....+|||.|+..
T Consensus 494 DLreEld~~~g~~kel~~r~~aaq---et~y--DrdqTI~KfRelva~Lqdqlqe~~dq~~Ss 551 (1243)
T KOG0971|consen 494 DLREELDMAKGARKELQKRVEAAQ---ETVY--DRDQTIKKFRELVAHLQDQLQELTDQQESS 551 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH---HHHH--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 223333333111111111111100 0011 111235555666778888888888888766
No 67
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.50 E-value=0.92 Score=50.51 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchh
Q 041227 1188 QNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLG 1248 (1468)
Q Consensus 1188 enLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~ 1248 (1468)
..++.-|.+|+.++..+ +.-+-.|-+.|-.|-.....|+..|.....+.......|+
T Consensus 172 ~~~e~~i~~L~~~lkea----E~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEA----ENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777776655 3344555666666666666666666666555555544443
No 68
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.24 E-value=16 Score=48.40 Aligned_cols=78 Identities=13% Similarity=0.199 Sum_probs=53.8
Q ss_pred hcccccchHHH--HHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCccccccccccchhH
Q 041227 672 TYENRSDDLEN--QLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELFQGKEAESKDHPAAVCPLCKIYESDDFL 749 (1468)
Q Consensus 672 ~~~~k~~dlel--~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~ 749 (1468)
|+-.|-+.||+ ....|+.+-.+|.+.|..++.++++.+-+|..+..++.-..+.-
T Consensus 659 y~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~----------------------- 715 (1200)
T KOG0964|consen 659 YEDQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDR----------------------- 715 (1200)
T ss_pred chhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------------------
Confidence 44446666666 46789999999999999999999999999888876663322211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041227 750 EMSRLLSELYEQIQLSLANLKKQQLL 775 (1468)
Q Consensus 750 ~~s~~~sel~~ql~~~l~~~kk~~~~ 775 (1468)
..|--=+.+|..++.++|.+-+.
T Consensus 716 ---~~~~~~~~~l~~e~~~~k~e~~~ 738 (1200)
T KOG0964|consen 716 ---NAFKREHEKLKRELNTIKGEKSR 738 (1200)
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHH
Confidence 11223356788888888854443
No 69
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=17 Score=48.41 Aligned_cols=283 Identities=21% Similarity=0.255 Sum_probs=175.7
Q ss_pred HHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhh
Q 041227 999 RICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQ 1078 (1468)
Q Consensus 999 risgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQ 1078 (1468)
-|+-||+-+..--.+|+ .....|+.+|......++++.-+++.+.++.++= |=|||.|.++=..++
T Consensus 770 ~i~~lE~~~~d~~~~re----------~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l----~lE~e~l~~e~~~~k 835 (1174)
T KOG0933|consen 770 KISTLEKKMKDAKANRE----------RRLKDLEKEIKTAKQRAEESSKELEKRENEYERL----QLEHEELEKEISSLK 835 (1174)
T ss_pred HHHHHHHHHhHhhhhhH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34455555554444443 4677888888888888888888888888888763 447777877777777
Q ss_pred hhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHH---HHhHHHHhhhhhhHhhHHH
Q 041227 1079 ATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEK---YLSMLEEISSKEKALNLEL 1155 (1468)
Q Consensus 1079 aT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~k---l~s~le~issKEk~l~~EL 1155 (1468)
.--+++...|++|...+++|+----..+.......++|..-+.++.+|-..+.-+..+ +.+-..++.++=+.|.-|
T Consensus 836 ~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e- 914 (1174)
T KOG0933|consen 836 QQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHE- 914 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhH-
Confidence 7788899999999999999988888888888888888888888888888776443332 222222222222333333
Q ss_pred HHHHHHhhhhcchhhhHHHHHHHhhhhhH---HHhhhHHHHHHHHHHh------hhhhhcccccchhHHHHHHhhhhhhh
Q 041227 1156 DALLHENRKHKDKSVTEESLLNQMYMEKT---VEAQNLQREVAHLTEQ------ISATYDEKDGTHSEAVLEVSHLRADK 1226 (1468)
Q Consensus 1156 e~l~qE~~~~~ek~~~~~~llnq~~~Ek~---vevenLqrEv~~Lt~Q------iSat~dere~~~s~av~EvS~LrAdk 1226 (1468)
+++|..|+. ++|+.|..+..-|.++ =-..||=.-.-...|=-+.-.|-.++
T Consensus 915 --------------------~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~ 974 (1174)
T KOG0933|consen 915 --------------------VTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKK 974 (1174)
T ss_pred --------------------HHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHH
Confidence 344444432 2333333333332211 12234444445566667777777788
Q ss_pred HHHHHH--------HHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHH--------HHh--h
Q 041227 1227 AVLEAA--------LQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLN--------LLE--D 1288 (1468)
Q Consensus 1227 A~lE~~--------l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~--------lle--~ 1288 (1468)
.+|+.. |..+..+..-..+..+.+. .-+.||+..+..|..-+.. .|..-++++-. ||- .
T Consensus 975 ~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie-~Dk~kI~ktI~~lDe~k~~--~L~kaw~~VN~dFG~IFs~LLPga~ 1051 (1174)
T KOG0933|consen 975 EKLEKTVNPKNMDMLERAEEKEAALKTKKEIIE-KDKSKIKKTIEKLDEKKRE--ELNKAWEKVNKDFGSIFSTLLPGAM 1051 (1174)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHHHHHHhCCCcc
Confidence 777753 4556666666666666665 5678888888888766543 34333443322 222 2
Q ss_pred hCcchHhhhhhhhhhccccccchHHHHHHHH
Q 041227 1289 VKPNEEKFRGTIRGLELKLKASDYERLQLTE 1319 (1468)
Q Consensus 1289 ~kSneeklk~t~~~LElklk~s~yErqq~~e 1319 (1468)
++-..-.=++-..|||++.+--.-=++-+.|
T Consensus 1052 AkL~Ppeg~~~~dGLEvkV~~G~iWKeSL~E 1082 (1174)
T KOG0933|consen 1052 AKLEPPEGKTVLDGLEVKVKFGGIWKESLSE 1082 (1174)
T ss_pred ccccCCCCCccccceEEEEEeCccHHHHHHH
Confidence 2333333456677899888865544544443
No 70
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.18 E-value=12 Score=46.58 Aligned_cols=107 Identities=23% Similarity=0.209 Sum_probs=79.5
Q ss_pred HHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHH
Q 041227 1275 LMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENER 1354 (1468)
Q Consensus 1275 L~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~r 1354 (1468)
|.++-.++..=|+.++..+.+.+..+.+|-..|. |+..|....|. .....+.|+..+|..+..++....-
T Consensus 342 L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lq-------ql~~Eae~Ak~---ea~~~~~E~~~~k~E~e~~ka~i~t 411 (522)
T PF05701_consen 342 LEAELNKTRSELEAAKAEEEKAKEAMSELPKALQ-------QLSSEAEEAKK---EAEEAKEEVEKAKEEAEQTKAAIKT 411 (522)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666666666666666666 77777766663 3455678999999999999999999
Q ss_pred HHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhh
Q 041227 1355 LEASFQILSGDYEELKAERISFMQKISTSQQVVSELD 1391 (1468)
Q Consensus 1355 Le~sl~~~S~e~eeLkaek~~~~~kis~~q~~~sele 1391 (1468)
.+.-|+..-.+.+..|+-=..-.+.|-.++...+...
T Consensus 412 ~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~ 448 (522)
T PF05701_consen 412 AEERLEAALKEAEAAKASEALALAEIKALSESESSSR 448 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999988888888888877654443
No 71
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.14 E-value=5.7 Score=49.80 Aligned_cols=293 Identities=20% Similarity=0.238 Sum_probs=152.8
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHhhh-hhhhccchhhhccchhhhhhHHHHHHHHHHHH---HHhHHHHHHHHHHHHHhH
Q 041227 985 HLHELEEENLQLSERICGLEAQLRYL-TNERESSRLELENSATHAMSLQDEIRRLEAEM---EAQKVETKQKLQDMQKRW 1060 (1468)
Q Consensus 985 hls~Le~En~qLserisgLEaql~~l-t~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~---e~qk~~~kqk~qe~q~~w 1060 (1468)
|+--||++|--|.-.|--|+.=...= +.=+.-+..++-..+..+..-.+++..++.+. ..+..+++.++.+.++..
T Consensus 57 kVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44556666666555555444322111 11122223333333444433333333333322 334567888999999888
Q ss_pred hhhhhhhh-HHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHh
Q 041227 1061 LGVQEECE-YLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLS 1139 (1468)
Q Consensus 1061 se~Qee~e-~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s 1139 (1468)
..++++.. |+.+.| .|+|-..-+----+.|.-....||+++--|..+...+=..|+.---.+. +++.+..+
T Consensus 137 ~~~re~~~~~~~~l~-~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~-------d~~n~~q~ 208 (546)
T KOG0977|consen 137 RGAREKLDDYLSRLS-ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRV-------DLQNRVQT 208 (546)
T ss_pred hhhHHHHHHHhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------HHHhHHHH
Confidence 88888877 454443 3333322222222333333444444444443333333333333322333 33444444
Q ss_pred HHHHhhhhhhHhhHH-----------------------HHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHH
Q 041227 1140 MLEEISSKEKALNLE-----------------------LDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAH 1196 (1468)
Q Consensus 1140 ~le~issKEk~l~~E-----------------------Le~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~ 1196 (1468)
|+++|+.....-..| |..-++|-|-+-|.+.+ .|+=.+|.. .++
T Consensus 209 Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~----~nR~diE~~-----Y~~---- 275 (546)
T KOG0977|consen 209 LLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISR----QNRKDIESW-----YKR---- 275 (546)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHH-----HHH----
Confidence 455554444333333 22223333222222210 111111111 112
Q ss_pred HHHhhhhhh--cccccchhHHHHH--------HhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHH
Q 041227 1197 LTEQISATY--DEKDGTHSEAVLE--------VSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELA 1266 (1468)
Q Consensus 1197 Lt~QiSat~--dere~~~s~av~E--------vS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~ 1266 (1468)
+|.... .+|.+...+..+| ++.|||-.+.||+.-.....++.-++.||++-+.=|+..+-..-.+++
T Consensus 276 ---kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~ 352 (546)
T KOG0977|consen 276 ---KIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIA 352 (546)
T ss_pred ---HHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 222222 4444444444443 688999999999999999999999999999999999999999888888
Q ss_pred HHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhh
Q 041227 1267 AARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIR 1301 (1468)
Q Consensus 1267 askqn~emL~~d~ek~~~lle~~kSneeklk~t~~ 1301 (1468)
-+|.-..-|+++-++|...=-+....-..+|+-++
T Consensus 353 ~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 353 KMREECQQLSVELQKLLDTKISLDAEIAAYRKLLE 387 (546)
T ss_pred HHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence 88888888888777776443333333333333333
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.08 E-value=1 Score=57.45 Aligned_cols=149 Identities=26% Similarity=0.320 Sum_probs=105.1
Q ss_pred HHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhh
Q 041227 887 EIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNR 966 (1468)
Q Consensus 887 ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~ 966 (1468)
.+.+|++++..-+.|+.+.|..-.||-.+|+.|.+--+++ .-||..+|.|.-
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~l--------------k~eL~qlr~ene-------------- 470 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSL--------------KSELSQLRQENE-------------- 470 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHH--------------HHHHHHHHHHHH--------------
Confidence 3447777777778888889999999999999876643334 446666666543
Q ss_pred hhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccch----------hhhhhHHHHHH
Q 041227 967 NLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSA----------THAMSLQDEIR 1036 (1468)
Q Consensus 967 ~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~----------s~~~~Lqdei~ 1036 (1468)
-|+.|+.+|..++...=..+.-||.-..+.-+.=.-||+||......|---+- -.++ -+...++..++
T Consensus 471 ~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~--~aar~~~~~~~~r~e~~e~~r~r~~ 548 (697)
T PF09726_consen 471 QLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEE--KAARALAQAQATRQECAESCRQRRR 548 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--hhhhccccchhccchhHHHHHHHHH
Confidence 66778888888888888888888888888888888899998765543321100 0111 23445777888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhhhhh
Q 041227 1037 RLEAEMEAQKVETKQKLQDMQKRWLGVQE 1065 (1468)
Q Consensus 1037 r~~~e~e~qk~~~kqk~qe~q~~wse~Qe 1065 (1468)
+|+.|......|+|+|-...+.-=.++|+
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQE 577 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887766665555543
No 73
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.98 E-value=21 Score=48.24 Aligned_cols=162 Identities=23% Similarity=0.311 Sum_probs=118.5
Q ss_pred hhhHHHHHHHHHHH------hHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhh
Q 041227 1224 ADKAVLEAALQEVQ------GKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFR 1297 (1468)
Q Consensus 1224 AdkA~lE~~l~ev~------~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk 1297 (1468)
+-.+.++-.+.++| +++.-+.++++.+.. .+++.--+.+-...+..++|.+|..++-.-++..-.|..|+-
T Consensus 865 ~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~---e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q 941 (1293)
T KOG0996|consen 865 EQIEELKKEVEELQEKAAKKARIKELQNKIDEIGG---EKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQ 941 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc---hhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHH
Confidence 44445555555553 333444444444443 356666677778888899999999999999999999999999
Q ss_pred hhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHH
Q 041227 1298 GTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFM 1377 (1468)
Q Consensus 1298 ~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~ 1377 (1468)
+-+..||-.....+-|---++++..+++.- ...++-++-.--.++.+++.+..-+..-+-.+...+.+||+..+.+.
T Consensus 942 ~~l~~le~~~~~~e~e~~~L~e~~~~~~~k---~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~ 1018 (1293)
T KOG0996|consen 942 KKLSELEREIEDTEKELDDLTEELKGLEEK---AAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIE 1018 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 999999988886666666666666666543 33456666667777888888888888888888888899999888888
Q ss_pred HhhhhHHHHHhhhh
Q 041227 1378 QKISTSQQVVSELD 1391 (1468)
Q Consensus 1378 ~kis~~q~~~sele 1391 (1468)
.|+-.+-..+.+++
T Consensus 1019 ~K~e~~~~~l~e~~ 1032 (1293)
T KOG0996|consen 1019 NKLEAINGELNEIE 1032 (1293)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877766665553
No 74
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.93 E-value=1.8 Score=47.79 Aligned_cols=176 Identities=23% Similarity=0.316 Sum_probs=122.3
Q ss_pred hhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhch
Q 041227 1287 EDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDY 1366 (1468)
Q Consensus 1287 e~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~ 1366 (1468)
++.-.+--+|+.-...|=..+-..+-.-.++.+||..|+-|++-+..+=..--+++.+|..+|..-..||+..+.+...|
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~ 90 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQA 90 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444455556899999999999987776666666788888888888888999999999999
Q ss_pred HHHHHHHhhHHHhhhhHHH----HHhhhhhhhhhhhHHHHHHHhhcCchhHHHh-hhhhhHHHhhHHHHHHhhhHHHHHH
Q 041227 1367 EELKAERISFMQKISTSQQ----VVSELDDCKRKKVALQEKVLRLEGDLAAIEA-LGSQEAALKNELAQIRRENSQFQRR 1441 (1468)
Q Consensus 1367 eeLkaek~~~~~kis~~q~----~~seled~k~sk~sleeKl~rle~dl~a~ea-~~~~~aelk~el~ri~r~n~e~q~k 1441 (1468)
..+..+..++..+|-++|. ...+.+..+...-.|..+..-|.+-+.--++ +|..||. ++...+.-.++..-
T Consensus 91 rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~----l~e~t~~i~eL~~~ 166 (193)
T PF14662_consen 91 RQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAI----LSERTQQIEELKKT 166 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHH
Confidence 9999999999999999985 4566777777777888888888888855544 4555555 44444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 041227 1442 IKCLEKEKEDCLSRAQAIEEELKQT 1466 (1468)
Q Consensus 1442 i~~le~E~ee~~~r~q~lE~elk~~ 1466 (1468)
|.....=.++|+...--||+.|-++
T Consensus 167 ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 167 IEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555566666666666666443
No 75
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.81 E-value=5.2 Score=50.65 Aligned_cols=217 Identities=22% Similarity=0.298 Sum_probs=129.1
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHH-------------HHHHhHH
Q 041227 981 EMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEA-------------EMEAQKV 1047 (1468)
Q Consensus 981 elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~-------------e~e~qk~ 1047 (1468)
+-+.-+.+|..+.-+|...|.++++++..++.+..-..-+....+.....++.++...+. .+++...
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~ 404 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334455666666666777777777766666666555444444444444445444443321 4456666
Q ss_pred HHHHHHHHHHHhHhhhhhh----hhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhh-------HHHHHHh
Q 041227 1048 ETKQKLQDMQKRWLGVQEE----CEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHC-------AVLEAQL 1116 (1468)
Q Consensus 1048 ~~kqk~qe~q~~wse~Qee----~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~-------t~lE~kL 1116 (1468)
.-.+++..++.+|-.+.-. -.-||.++ .+...+++........+|.+.-++...+ .+|.+++
T Consensus 405 ~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~-------~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~ 477 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRAPLIEEYRRLKEKA-------SNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKEL 477 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999665532 22333222 2233344444444444444444443333 3344444
Q ss_pred hhhh---------hhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhh----------HHHHHHHHHhhhhcchhhhHHHHHH
Q 041227 1117 GESE---------KGFSSLSMKVEALEEKYLSMLEEISSKEKALN----------LELDALLHENRKHKDKSVTEESLLN 1177 (1468)
Q Consensus 1117 ~eS~---------~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~----------~ELe~l~qE~~~~~ek~~~~~~lln 1177 (1468)
...- +|-.++.+-|.-=.+.+..++.|+..--|.+| ...|.++-...|+.+=..++.-+|.
T Consensus 478 e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La 557 (594)
T PF05667_consen 478 EKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLA 557 (594)
T ss_pred HhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3322 23345555566666677777766655444444 2466666677778888888888888
Q ss_pred Hhhh------hhHHHhhhHHHHHHHHHHhhhhh
Q 041227 1178 QMYM------EKTVEAQNLQREVAHLTEQISAT 1204 (1468)
Q Consensus 1178 q~~~------Ek~vevenLqrEv~~Lt~QiSat 1204 (1468)
.|.- +.+-+..+..|||.+|.+||..-
T Consensus 558 ~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e 590 (594)
T PF05667_consen 558 SLHENCSQLIETVEETGTISREIRDLEEQIDTE 590 (594)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8864 56778899999999999999753
No 76
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=5.1 Score=51.81 Aligned_cols=175 Identities=24% Similarity=0.289 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhc
Q 041227 898 KEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELES 977 (1468)
Q Consensus 898 ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles 977 (1468)
+++=++.+.. ..|.-++.-++|.+.+++++.+..++..-+-... ++++.-+.++++-..-.-.+-
T Consensus 791 qeqv~El~~~-l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~--------------~le~m~~~~~~la~e~~~ieq 855 (970)
T KOG0946|consen 791 QEQVIELLKN-LSEESTRLQELQSELTQLKEQIQTLLERTSAAAD--------------SLESMGSTEKNLANELKLIEQ 855 (970)
T ss_pred HHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hhHHhhccccchhhHHHHHHH
Confidence 3333444444 7888999999999999999999988877433333 222333333333321110000
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041227 978 SKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQ 1057 (1468)
Q Consensus 978 ~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q 1057 (1468)
-=.+|--.+-.+......|+|-|+.|+||...-|-=++ +.-+++ .||+-||. .+||...+.+
T Consensus 856 ~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka-----~~~~k~--~nl~lki~-----------s~kqeqee~~ 917 (970)
T KOG0946|consen 856 KLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKA-----LKTVKS--ENLSLKIV-----------SNKQEQEELL 917 (970)
T ss_pred HHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHH-----HHHhhc--ccchhccc-----------chhhhHHHHH
Confidence 00011112333345556777777777766554322222 111222 23333333 3344444444
Q ss_pred HhHhhhhhhhhHHhhcCchhhhhhhhHHHHh-hhHHHhHHHHHHHHhhh
Q 041227 1058 KRWLGVQEECEYLKVANPKLQATAEGLIEEC-SLLQKSNAELRKQKVNL 1105 (1468)
Q Consensus 1058 ~~wse~Qee~e~Lr~~N~kLQaT~e~lieec-~slQ~~~~eLr~qklel 1105 (1468)
--.----+....||+++.+|-++++-.+.+. ++-+-.++.+-||++..
T Consensus 918 v~~~~~~~~i~alk~~l~dL~q~~eeie~e~~s~~~e~e~~~s~~~~Kd 966 (970)
T KOG0946|consen 918 VLLADQKEKIQALKEALEDLNQPVEEIEDEKVSIIGEQEASLSMQSLKD 966 (970)
T ss_pred HHHhhHHHHHHHHHHHHHHhCCChhhHHhhhhcccchhhhhhhcccccc
Confidence 3333333456789999999999998776665 44566667777766543
No 77
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.69 E-value=2.6 Score=46.69 Aligned_cols=186 Identities=22% Similarity=0.261 Sum_probs=119.3
Q ss_pred HHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhh---hhhhhHHh
Q 041227 995 QLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGV---QEECEYLK 1071 (1468)
Q Consensus 995 qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~---Qee~e~Lr 1071 (1468)
.|--.|.+|+..=+.|++|....+..++...-.-..|..+|. +++..++..|.-.-.+ -+|-+-||
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~-----------~L~~q~~s~Qqal~~aK~l~eEledLk 73 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEIT-----------DLRKQLKSLQQALQKAKALEEELEDLK 73 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888888888888888887777 4444445555443333 56666666
Q ss_pred hcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHh
Q 041227 1072 VANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKAL 1151 (1468)
Q Consensus 1072 ~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l 1151 (1468)
..=..|+.-.-+|...|+.+.+-+.-|=..--.|.+.-..+=...+-.++++-+.+..-..|-.++.. =| +|
T Consensus 74 ~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~-------~e-~l 145 (193)
T PF14662_consen 74 TLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE-------FE-SL 145 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH-------HH-HH
Confidence 65555555555666666665555555555555555555555555555566666555554444444421 11 55
Q ss_pred hHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhc
Q 041227 1152 NLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYD 1206 (1468)
Q Consensus 1152 ~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~d 1206 (1468)
..--|+++.+...|-+ =|++.--|=+.-.+-|..|+.||-.|+|-+++
T Consensus 146 ~~~~da~l~e~t~~i~-------eL~~~ieEy~~~teeLR~e~s~LEeql~q~~~ 193 (193)
T PF14662_consen 146 ICQRDAILSERTQQIE-------ELKKTIEEYRSITEELRLEKSRLEEQLSQMQE 193 (193)
T ss_pred HHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6667777777666554 24555556677788889999999999987764
No 78
>PRK09039 hypothetical protein; Validated
Probab=94.52 E-value=1.2 Score=52.48 Aligned_cols=70 Identities=24% Similarity=0.278 Sum_probs=53.8
Q ss_pred HHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHH
Q 041227 1177 NQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQT 1256 (1468)
Q Consensus 1177 nq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ 1256 (1468)
-..|-|.--.|..|+++|+.|..| .|.|+++|...+.+-+-+..++++|+.+-..
T Consensus 129 k~~~se~~~~V~~L~~qI~aLr~Q-------------------------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 129 KQVSARALAQVELLNQQIAALRRQ-------------------------LAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778888999999999888 7788889988888887777777777766666
Q ss_pred HHHHHHHHHHHHhhh
Q 041227 1257 KIQQLKSELAAARQN 1271 (1468)
Q Consensus 1257 ki~~l~~~L~askqn 1271 (1468)
.+..-+.+|+..|.+
T Consensus 184 a~~~~~~~l~~~~~~ 198 (343)
T PRK09039 184 ALAQRVQELNRYRSE 198 (343)
T ss_pred HHHHHHHHHHHhHHH
Confidence 666666666666665
No 79
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.12 E-value=1.3 Score=46.66 Aligned_cols=133 Identities=27% Similarity=0.274 Sum_probs=96.2
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHh
Q 041227 1108 HCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEA 1187 (1468)
Q Consensus 1108 ~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vev 1187 (1468)
.+-+++.+|.++++.-..+=..|+.||+.|- +.+++..+- ..+.
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe-------------------~~q~~~e~~-----------------~~da 47 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELE-------------------MSQENKECL-----------------ILDA 47 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH-------------------HHHHhHHHH-----------------HHHH
Confidence 4567899999999998888889999998886 233333221 3467
Q ss_pred hhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHH
Q 041227 1188 QNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAA 1267 (1468)
Q Consensus 1188 enLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~a 1267 (1468)
+|-++||..|.++|+..-.++.++.. |+..||.+|-.|...++.-++++.-.++-..++..--+.+=+..+.-.-.
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~----EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~ 123 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLEL----ELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEE 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998888887775 57789999999999999999999776665554443333333334444455
Q ss_pred HhhhHHHHHhhHH
Q 041227 1268 ARQNQEVLMADHE 1280 (1468)
Q Consensus 1268 skqn~emL~~d~e 1280 (1468)
++...+||.++-.
T Consensus 124 ~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 124 SKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHh
Confidence 5555566655543
No 80
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.03 E-value=17 Score=43.12 Aligned_cols=252 Identities=24% Similarity=0.267 Sum_probs=123.1
Q ss_pred HHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHh-HHHHhhhhhhHhhHHHHHHHHHh
Q 041227 1084 LIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLS-MLEEISSKEKALNLELDALLHEN 1162 (1468)
Q Consensus 1084 lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s-~le~issKEk~l~~ELe~l~qE~ 1162 (1468)
+---..+|+..|.-||..-.-...+|.+|..+++.-+..-..+--.+|.=|+-++- +++-|. .|+.|=+.|+..-
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~----~l~keKe~L~~~~ 100 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQ----QLKKEKETLALKY 100 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33334455555666666555566666666666666666666666666665555553 333332 3445555555555
Q ss_pred hhhcchhhhH-HHHHHHhhhhhHHHhhhHHHH----HHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHH
Q 041227 1163 RKHKDKSVTE-ESLLNQMYMEKTVEAQNLQRE----VAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQ 1237 (1468)
Q Consensus 1163 ~~~~ek~~~~-~~llnq~~~Ek~vevenLqrE----v~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~ 1237 (1468)
..-+|.++-. ..=|+|+.-||+---..|++| |..|..+|..- +++..+. =.++..||+.|-.||.+|.-.|
T Consensus 101 e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~L--e~e~~~~--q~~le~Lr~EKVdlEn~LE~EQ 176 (310)
T PF09755_consen 101 EQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERL--EKEKSAK--QEELERLRREKVDLENTLEQEQ 176 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHh--HHHHHHHHHHHHhHHHHHHHHH
Confidence 4444444321 112455555555332333433 22333333322 1111111 1456689999999998887775
Q ss_pred hHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHH---
Q 041227 1238 GKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYER--- 1314 (1468)
Q Consensus 1238 ~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yEr--- 1314 (1468)
+-+. .++..=++.|++-|.. |-.-|+..-|.---.+.+++. .+....-++
T Consensus 177 E~lv--------------N~L~Kqm~~l~~eKr~----------Lq~~l~~~~s~~~s~~d~~~~---~~~~Dt~e~~~s 229 (310)
T PF09755_consen 177 EALV--------------NRLWKQMDKLEAEKRR----------LQEKLEQPVSAPPSPRDTVNV---SEENDTAERLSS 229 (310)
T ss_pred HHHH--------------HHHHHHHHHHHHHHHH----------HHHHHccccCCCCCcchHHhh---cccCCchhHHHH
Confidence 4432 3444444444444433 444455444444444444321 111111111
Q ss_pred --HHHHHHhhhhHHHHHHHhhhhhHH-HHHHHHHHHHhhhhHHHHHHHHhhhhchHHHH
Q 041227 1315 --LQLTEEISSLKVQLERTAQFQDEV-LSLKKLLNEAKFENERLEASFQILSGDYEELK 1370 (1468)
Q Consensus 1315 --qq~~eE~s~LkvQlqk~~~lqdEv-~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLk 1370 (1468)
..+-.|++-|+-||.....-.-+= .+.-.....+.-|+.||---|+.--+.|+.|=
T Consensus 230 hI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~ 288 (310)
T PF09755_consen 230 HIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERREALC 288 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 145556666666666543322221 11233345555666666666666666665543
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.02 E-value=9 Score=48.47 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHH
Q 041227 1041 EMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEE 1087 (1468)
Q Consensus 1041 e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~liee 1087 (1468)
.+++++..++..+.+..+++.....++=+|--+.+-|.++..-+..|
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e 312 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKE 312 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHH
Confidence 55566666666666666666555555555444444444444444443
No 82
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.99 E-value=21 Score=44.26 Aligned_cols=203 Identities=24% Similarity=0.237 Sum_probs=122.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhh-cCc-hhhh-h----hhhHHHHhhhHHHhHHH
Q 041227 1025 ATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKV-ANP-KLQA-T----AEGLIEECSLLQKSNAE 1097 (1468)
Q Consensus 1025 ~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~-~N~-kLQa-T----~e~lieec~slQ~~~~e 1097 (1468)
...+..++..++.+..+.++++.+|.+=-+-.++-+.....--+.||. .+. -+.. + .+.|-+||..++-.+.-
T Consensus 213 l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~ 292 (511)
T PF09787_consen 213 LRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQL 292 (511)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHH
Confidence 345667778888888888888877766555566666555555667776 333 3332 2 46889999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHH
Q 041227 1098 LRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLN 1177 (1468)
Q Consensus 1098 Lr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~lln 1177 (1468)
|+.|--.+-.....+|.+++.....|-.+.+.....-.-..+. ..|+.-+-+|-.-..+-..+-.+-++
T Consensus 293 l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------e~e~~l~~~el~~~~ee~~~~~s~~~ 361 (511)
T PF09787_consen 293 LERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-----------EAELRLYYQELYHYREELSRQKSPLQ 361 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-----------HHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 9999888888899999999888877776655544332222211 45555555555444444444444455
Q ss_pred HhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchh--------HHHHHHhhhhhhhHHHHHHHHHHHhHhh
Q 041227 1178 QMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHS--------EAVLEVSHLRADKAVLEAALQEVQGKLK 1241 (1468)
Q Consensus 1178 q~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s--------~av~EvS~LrAdkA~lE~~l~ev~~k~~ 1241 (1468)
---.+|..|++.|...|...+ ..++-.|=-.++++ .+.+| .|...|..|.-.|+-+..+++
T Consensus 362 ~k~~~ke~E~q~lr~~l~~~~-~~s~~~elE~rl~~lt~~Li~KQ~~lE--~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 362 LKLKEKESEIQKLRNQLSARA-SSSSWNELESRLTQLTESLIQKQTQLE--SLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCCcHhHHHHHhhccHHHHHHHHHHH--HHHhhhhhccccHHHHHHHHH
Confidence 555667666666666666555 22222221112222 12333 455566666555555554444
No 83
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.46 E-value=34 Score=44.88 Aligned_cols=157 Identities=20% Similarity=0.262 Sum_probs=105.8
Q ss_pred hhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHH---HHHHHhHHHHHHHHHHHHHhH
Q 041227 984 VHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLE---AEMEAQKVETKQKLQDMQKRW 1060 (1468)
Q Consensus 984 ~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~---~e~e~qk~~~kqk~qe~q~~w 1060 (1468)
.+..+|+.+...|-.-...||..|+..++.-++++.++..++..+..|+.++..+. ..+++|..-.+.++..+.-|.
T Consensus 589 ~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~ 668 (769)
T PF05911_consen 589 SEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRL 668 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566777777777777788888888888999999999999999999998887554 477888888888888888888
Q ss_pred hhhhhhhhHHhhcCchhhhhhh-------hHHHHhhhHHHhHHHHHHH----HhhhhhhhHHHHHHhhhhhhhhhhhhhh
Q 041227 1061 LGVQEECEYLKVANPKLQATAE-------GLIEECSLLQKSNAELRKQ----KVNLHEHCAVLEAQLGESEKGFSSLSMK 1129 (1468)
Q Consensus 1061 se~Qee~e~Lr~~N~kLQaT~e-------~lieec~slQ~~~~eLr~q----klelh~~~t~lE~kL~eS~~~f~~~~k~ 1129 (1468)
..++.+-..|..-=..|..-.+ .+.--|..||-...-...- .+.=.+--..-|-+|.-+-.+|++|=+|
T Consensus 669 ~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeT 748 (769)
T PF05911_consen 669 KDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQET 748 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHH
Confidence 8777777776544444432222 2233355554433222110 0000000112356777888899999999
Q ss_pred HHHHHHHHHhH
Q 041227 1130 VEALEEKYLSM 1140 (1468)
Q Consensus 1130 Ve~LE~kl~s~ 1140 (1468)
|--|-..|-+|
T Consensus 749 I~sLGkQLksL 759 (769)
T PF05911_consen 749 IASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHHhc
Confidence 99998888765
No 84
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.38 E-value=44 Score=45.90 Aligned_cols=120 Identities=19% Similarity=0.130 Sum_probs=69.5
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhh-------------hhhHHHHHHHHHhHHHHhhh
Q 041227 1080 TAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSL-------------SMKVEALEEKYLSMLEEISS 1146 (1468)
Q Consensus 1080 T~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~-------------~k~Ve~LE~kl~s~le~iss 1146 (1468)
|+...+.+...|.....+.|+.---|.+..+.-+.=+..+.. .-| +..+..|+.++.|.-..+.+
T Consensus 632 t~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~--~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~ 709 (1294)
T KOG0962|consen 632 TIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACR--SHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEE 709 (1294)
T ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh--ccCCCccCCccchHHHHHHHHHHHHHHhccchhHHH
Confidence 555677777777777777787777777888877777666654 222 34455667777776666666
Q ss_pred hhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhh
Q 041227 1147 KEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQIS 1202 (1468)
Q Consensus 1147 KEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiS 1202 (1468)
-+..+..+--. |+.--.+.+=+.-.-.++...-.+...+..++..+++.+..+..
T Consensus 710 ~~~~l~k~~k~-~e~l~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e 764 (1294)
T KOG0962|consen 710 AEVELSKEEKI-FEILLKLKPTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEEE 764 (1294)
T ss_pred HHHHHHHHHHH-HHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhh
Confidence 66555443333 33333333322111123333344555666677777776655544
No 85
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.01 E-value=33 Score=43.42 Aligned_cols=294 Identities=19% Similarity=0.252 Sum_probs=158.4
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHH
Q 041227 1116 LGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVA 1195 (1468)
Q Consensus 1116 L~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~ 1195 (1468)
|.+---++.+|..+|-|||+.=.-|.-||..-+-....+. - =+.-|| +.|+.
T Consensus 44 l~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~t-----------s-------~ik~~y----------e~El~ 95 (546)
T KOG0977|consen 44 LQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRET-----------S-------GIKAKY----------EAELA 95 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-----------c-------chhHHh----------hhhHH
Confidence 4445568899999999999998855555432222221110 1 112222 22334
Q ss_pred HHHHhhhhhhcccccchhHHHHHHhhhhhh-------hHHHHHHHHHHHhHhhhhhcchhhhhhhHH---HHHHHHHHHH
Q 041227 1196 HLTEQISATYDEKDGTHSEAVLEVSHLRAD-------KAVLEAALQEVQGKLKLSESNLGTLRMESQ---TKIQQLKSEL 1265 (1468)
Q Consensus 1196 ~Lt~QiSat~dere~~~s~av~EvS~LrAd-------kA~lE~~l~ev~~k~~~~es~l~~l~~Es~---~ki~~l~~~L 1265 (1468)
.++.=|..|..+|. .+..++..|+.+ -.+.+..+..+.+++++|.+-|.++++|.. ..++-|.+++
T Consensus 96 ~ar~~l~e~~~~ra----~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 96 TARKLLDETARERA----KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 44444444444442 233444444444 334444556678888889999999988874 4788889999
Q ss_pred HHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHH
Q 041227 1266 AAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLL 1345 (1468)
Q Consensus 1266 ~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL 1345 (1468)
.--|....-|-.+-..+++.+.+-..---.+-..+ |.+++|+..++-+ .+ ..+.++........
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~--------------q~Lleel~f~~~~-h~-~eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRV--------------QTLLEELAFLKRI-HK-QEIEEERRKARRDT 235 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHhc-cH-HHHHHHHHHHhhcc
Confidence 98888888888888888888777543322222222 2444554444321 11 11222222222222
Q ss_pred --HHHhhhhHHHHHHHHhhhhchHHHHHHH-----hhHHHhhhhHHH-----------HHhhhhhhhhhhhHHHHHHHhh
Q 041227 1346 --NEAKFENERLEASFQILSGDYEELKAER-----ISFMQKISTSQQ-----------VVSELDDCKRKKVALQEKVLRL 1407 (1468)
Q Consensus 1346 --~~~kfek~rLe~sl~~~S~e~eeLkaek-----~~~~~kis~~q~-----------~~seled~k~sk~sleeKl~rl 1407 (1468)
.--.|=+.+|-.+++=+-.+|+.-.... .-|-.||..+++ +-.|+--.+..-..|..||.-|
T Consensus 236 t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klsel 315 (546)
T KOG0977|consen 236 TADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSEL 315 (546)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccc
Confidence 1112223345555555555555443322 235666777664 3345555555556677788777
Q ss_pred cCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1408 EGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEEL 1463 (1468)
Q Consensus 1408 e~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~el 1463 (1468)
|+--.+-++.-. .|+++|..=+|. |.+.+...+.+...++.+.+.|--++
T Consensus 316 E~~n~~L~~~I~---dL~~ql~e~~r~---~e~~L~~kd~~i~~mReec~~l~~El 365 (546)
T KOG0977|consen 316 ESRNSALEKRIE---DLEYQLDEDQRS---FEQALNDKDAEIAKMREECQQLSVEL 365 (546)
T ss_pred cccChhHHHHHH---HHHhhhhhhhhh---hhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 776666555444 666665554443 44444444444444444444443333
No 86
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.00 E-value=32 Score=43.27 Aligned_cols=439 Identities=23% Similarity=0.312 Sum_probs=219.1
Q ss_pred hhhhhhHHHHHHhHHhHHH-HhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhH---Hh
Q 041227 534 TQTLMHYEAEWRSRIAEKE-ENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTE---EN 609 (1468)
Q Consensus 534 ~q~l~~~e~e~~~kls~kE-~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtd---En 609 (1468)
.++...++ .|+.+-.+.. ..+..++..|.++...-+..........--++...++.....|..+.....+|.+ +|
T Consensus 56 Gqt~~~fe-~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~n 134 (560)
T PF06160_consen 56 GQTEEKFE-EWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKN 134 (560)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 3666654444 5567777777776654222110000011112333455555555556555555543 33
Q ss_pred HHHH----HHhhhhccccccCCCCCCCCCCCCccccchhHHHHHhHhHhhhHHHHHHHHHHHHhhh---------hcccc
Q 041227 610 LALL----FKLKESGKDLLTGGASSHECPDNKSVFESESEVVQLKSQICKLEEELQERNALIERLS---------TYENR 676 (1468)
Q Consensus 610 l~l~----~klkEs~~~~~~~~~s~~~~~~~~~~~~~es~~~~l~~q~~~leee~~~~~~~~~~~~---------~~~~k 676 (1468)
=.-+ -+..+.++.+..-..++++. +..|+.++..+|....++..++.... .++..
T Consensus 135 r~~i~~l~~~y~~lrk~ll~~~~~~G~a------------~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~ 202 (560)
T PF06160_consen 135 REEIEELKEKYRELRKELLAHSFSYGPA------------IEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEE 202 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchh------------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3333 33334445554433333333 34567778888888888888877655 44555
Q ss_pred cchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCccccccccccchhHHHHHHHH
Q 041227 677 SDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELFQGKEAESKDHPAAVCPLCKIYESDDFLEMSRLLS 756 (1468)
Q Consensus 677 ~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~s~~~s 756 (1468)
+.+|+..|...-.....+...+-.. |.+|+. +|+.+..++- + -.-.++...|.
T Consensus 203 ~~~l~~~~e~IP~l~~~l~~~~P~q----------l~eL~~---gy~~m~~~gy-~-------------l~~~~i~~~i~ 255 (560)
T PF06160_consen 203 TDELEEIMEDIPKLYKELQKEFPDQ----------LEELKE---GYREMEEEGY-Y-------------LEHLDIEEEIE 255 (560)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhHHH----------HHHHHH---HHHHHHHCCC-C-------------CCCCCHHHHHH
Confidence 5555555555554444444444222 233332 3333332221 1 11234566677
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCccchhhHHHHHHHHhhHHHHHHHHHHhhhchhHhhhhhhhHHHhh
Q 041227 757 ELYEQIQLSLANLKKQQLLQQPSAFGSDKSIVPTSTDLTTQKERVEAILNNFMELKRLFEEKINLSEDEIQSKKEITAVE 836 (1468)
Q Consensus 757 el~~ql~~~l~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~qk~~ve~~l~~~~~l~~l~e~~~~~~e~e~~s~~~~~~~~ 836 (1468)
.+-++|...+.+|+. .++..-...+..|-.. +..=...++.|+..+..+.-.-
T Consensus 256 ~i~~~l~~~~~~L~~--------------------l~l~~~~~~~~~i~~~-------Id~lYd~le~E~~Ak~~V~~~~ 308 (560)
T PF06160_consen 256 QIEEQLEEALALLKN--------------------LELDEVEEENEEIEER-------IDQLYDILEKEVEAKKYVEKNL 308 (560)
T ss_pred HHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhH
Confidence 788888888888872 2332223333333333 3333334455555444333221
Q ss_pred ccccccccCCCCCCCccccccccccccccccccccccchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhh
Q 041227 837 ANSDVDQNGLQGPDSNEIVLSTHIHGVDSQHMEFKSDVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQI 916 (1468)
Q Consensus 837 ~~~~~~~~~l~~~~~~en~~~~~~~~~~~~~~e~e~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~i 916 (1468)
..+...++.+....-.-..+++.++..-.+...|++..+ .++.++
T Consensus 309 -------------------------------~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~----~l~~~l 353 (560)
T PF06160_consen 309 -------------------------------KELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVR----ELEKQL 353 (560)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH----HHHHHH
Confidence 122234445555555667778888887777777776654 445566
Q ss_pred hHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHH
Q 041227 917 SDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQL 996 (1468)
Q Consensus 917 s~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qL 996 (1468)
..|++....+..++ ..+. +. ++.+...=.++..++..++.+-..+
T Consensus 354 ~~l~~~~~~~~~~i----~~~~-----------------------~~--------yS~i~~~l~~~~~~l~~ie~~q~~~ 398 (560)
T PF06160_consen 354 KELEKRYEDLEERI----EEQQ-----------------------VP--------YSEIQEELEEIEEQLEEIEEEQEEI 398 (560)
T ss_pred HHHHHHHHHHHHHH----HcCC-----------------------cC--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555553333 1211 11 2333333344456777777777777
Q ss_pred HHHHhhHHHHHhhhhhhhccchhhhccchh----------------hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 041227 997 SERICGLEAQLRYLTNERESSRLELENSAT----------------HAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRW 1060 (1468)
Q Consensus 997 serisgLEaql~~lt~E~es~~l~l~nS~s----------------~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~w 1060 (1468)
.+.+.+|...-....+.-.-.+..|.+-+. ......++|.++...++.-.+++ ...++.|
T Consensus 399 ~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm----~~v~~~l 474 (560)
T PF06160_consen 399 NESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINM----DEVNKQL 474 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCH----HHHHHHH
Confidence 777777765443333332223333322222 22333455555555555444433 4566666
Q ss_pred hhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhh-hhhHHHHHHhhhhhhhhhh
Q 041227 1061 LGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLH-EHCAVLEAQLGESEKGFSS 1125 (1468)
Q Consensus 1061 se~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh-~~~t~lE~kL~eS~~~f~~ 1125 (1468)
..|+.+-+.|. ..++++|+-. ...|-=.|--..+ ...-.+-+.|.++...|..
T Consensus 475 ~~a~~~v~~L~-------~~t~~li~~A-----~L~E~~iQYaNRYR~~~~~v~~al~~Ae~~F~~ 528 (560)
T PF06160_consen 475 EEAEDDVETLE-------EKTEELIDNA-----TLAEQLIQYANRYRSDNPEVDEALTEAEDLFRN 528 (560)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHH-----HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHh
Confidence 66666666552 2233333322 1222224444444 4455667778888888876
No 87
>PRK11637 AmiB activator; Provisional
Probab=92.95 E-value=11 Score=45.41 Aligned_cols=33 Identities=6% Similarity=0.256 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhh
Q 041227 1030 SLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEE 1066 (1468)
Q Consensus 1030 ~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee 1066 (1468)
.+++++..++. ++..+++++.+.+.+..+++.+
T Consensus 44 ~~~~~l~~l~~----qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 44 DNRDQLKSIQQ----DIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred hhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555553333 3334444555555555444444
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.92 E-value=2.3 Score=49.53 Aligned_cols=114 Identities=19% Similarity=0.386 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhH-HHHHHHhhcCchhHHHhhh
Q 041227 1340 SLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVA-LQEKVLRLEGDLAAIEALG 1418 (1468)
Q Consensus 1340 ~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~s-leeKl~rle~dl~a~ea~~ 1418 (1468)
.|...+...+..+..|...+..+.+-...|.+.+..+..++..++..+.+++.|-+.+.. +...|..+..++
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i------- 225 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEI------- 225 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHH-------
Confidence 356677778888999999999999999999999999999999999999999999986642 333333333332
Q ss_pred hhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1419 SQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEEL 1463 (1468)
Q Consensus 1419 ~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~el 1463 (1468)
++.|.++..++..-..+..+|..+.+++.+|+..+..++.-+
T Consensus 226 ---~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 226 ---EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244455556666666666666666666666666666665444
No 89
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.35 E-value=16 Score=45.16 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=66.8
Q ss_pred hhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccch----hhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041227 982 MEVHLHELEEENLQLSERICGLEAQLRYLTNERESSR----LELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQ 1057 (1468)
Q Consensus 982 lE~hls~Le~En~qLserisgLEaql~~lt~E~es~~----l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q 1057 (1468)
||-|+-.+++-..+|..+.-|+|-.|+....+-+-.+ -++-.++.-+--|..|+-.+.-.+-+.+.++.|++|..-
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~ 564 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTE 564 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHH
Confidence 7889999999999999999999999988776644333 233344555556666666666777888888888888887
Q ss_pred HhHhhhhhhhhHHh
Q 041227 1058 KRWLGVQEECEYLK 1071 (1468)
Q Consensus 1058 ~~wse~Qee~e~Lr 1071 (1468)
-.+-+.--+|-|-|
T Consensus 565 i~ld~~~~~~n~~r 578 (622)
T COG5185 565 IKLDELKVDLNRKR 578 (622)
T ss_pred hhHHHHHHHHHHHH
Confidence 77766666666654
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.24 E-value=5.3 Score=42.09 Aligned_cols=139 Identities=27% Similarity=0.357 Sum_probs=81.4
Q ss_pred hCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHH
Q 041227 1289 VKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEE 1368 (1468)
Q Consensus 1289 ~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~ee 1368 (1468)
.|..-+..-.+...+|.++|.-+-+--+.=.||.+|.. |+..++++|-.+...|.+++-..+.-+...
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~---K~~~lE~eld~~~~~l~~~k~~lee~~~~~--------- 72 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK---KNQQLEEELDKLEEQLKEAKEKLEESEKRK--------- 72 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------
Confidence 34445555566666666666665555566666666543 444556666666666665554333222211
Q ss_pred HHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHH
Q 041227 1369 LKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKE 1448 (1468)
Q Consensus 1369 Lkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E 1448 (1468)
..--+|..||..||.+|-..+..-. +..--|..+--...+|-|+++.|+.+
T Consensus 73 --------------------------~~~E~l~rriq~LEeele~ae~~L~---e~~ekl~e~d~~ae~~eRkv~~le~~ 123 (143)
T PF12718_consen 73 --------------------------SNAEQLNRRIQLLEEELEEAEKKLK---ETTEKLREADVKAEHFERKVKALEQE 123 (143)
T ss_pred --------------------------HhHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 1111444444455544443332221 22222333334467899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 041227 1449 KEDCLSRAQAIEEELKQTKK 1468 (1468)
Q Consensus 1449 ~ee~~~r~q~lE~elk~~k~ 1468 (1468)
..++-.|+..|+..++..||
T Consensus 124 ~~~~E~k~eel~~k~~~~k~ 143 (143)
T PF12718_consen 124 RDQWEEKYEELEEKYKEAKK 143 (143)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988775
No 91
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.91 E-value=56 Score=43.47 Aligned_cols=89 Identities=21% Similarity=0.143 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHHhhhhhhHHHhhHHH
Q 041227 1350 FENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALGSQEAALKNELA 1429 (1468)
Q Consensus 1350 fek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a~ea~~~~~aelk~el~ 1429 (1468)
.+...|.-+..+.-+|+-+++.-|.|..-|++.+++.. |-+- --+++|+-.++.++-++|+--..
T Consensus 962 ~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~-----~h~v-~~~~ek~ee~~a~lr~Ke~efee--------- 1026 (1243)
T KOG0971|consen 962 TEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDA-----DHRV-EKVQEKLEETQALLRKKEKEFEE--------- 1026 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhH-----hHHH-HHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 34456667778888899999999999999999887753 2222 25789999999999888763321
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1430 QIRRENSQFQRRIKCLEKEKEDCLSRAQ 1457 (1468)
Q Consensus 1430 ri~r~n~e~q~ki~~le~E~ee~~~r~q 1457 (1468)
+=.-+|.+|++|+.++.++..|+.
T Consensus 1027 ----tmdaLq~di~~lEsek~elKqrl~ 1050 (1243)
T KOG0971|consen 1027 ----TMDALQADIDQLESEKAELKQRLN 1050 (1243)
T ss_pred ----HHHHHHHHHHHHHhhHHHHHHHhh
Confidence 123389999999999999999974
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.88 E-value=23 Score=45.14 Aligned_cols=202 Identities=26% Similarity=0.320 Sum_probs=111.1
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 041227 980 HEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKR 1059 (1468)
Q Consensus 980 ~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~ 1059 (1468)
...+--..+=++|..+|-+.|..|.+++..+..+.+.....+.- +..++.+++.+.+ ++.+.+ ...++
T Consensus 317 ~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q-------~~~e~~~~~~~~~----~le~~~-~l~~k 384 (594)
T PF05667_consen 317 ETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQ-------LEEELEEKEAENE----ELEEEL-KLKKK 384 (594)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----HHHHHH-HHHHH
Confidence 33334445667777788888888888887777776655443322 2222222222111 111111 13333
Q ss_pred Hhhhhhhh-hHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 041227 1060 WLGVQEEC-EYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYL 1138 (1468)
Q Consensus 1060 wse~Qee~-e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~ 1138 (1468)
.-+.=.+. +.+ .|||+-++.-.+-.-.|+..-..-|. .|-..+..|......-.-.+...+..|..+..+.-
T Consensus 385 ~~~lL~d~e~ni----~kL~~~v~~s~~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k 457 (594)
T PF05667_consen 385 TVELLPDAEENI----AKLQALVEASEQRLVELAQQWEKHRA---PLIEEYRRLKEKASNRESESKQKLQEIKELREEIK 457 (594)
T ss_pred HHHHhcCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 32222221 222 36666665544444455555555444 45555556665555444455566778999999999
Q ss_pred hHHHHhhhhhhH---hhHHHHHHHHHhhhhcchhhhHH------HHHHHh-----hhhhH-HHhhhHHHHHHHHHHhhhh
Q 041227 1139 SMLEEISSKEKA---LNLELDALLHENRKHKDKSVTEE------SLLNQM-----YMEKT-VEAQNLQREVAHLTEQISA 1203 (1468)
Q Consensus 1139 s~le~issKEk~---l~~ELe~l~qE~~~~~ek~~~~~------~llnq~-----~~Ek~-vevenLqrEv~~Lt~QiSa 1203 (1468)
.+..+|..||.. |..|++.+ .....|-. -+...| ..+|+ ..+..||+|+-.|+.++.-
T Consensus 458 ~~~~e~~~Kee~~~qL~~e~e~~-------~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 458 EIEEEIRQKEELYKQLVKELEKL-------PKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999984 44454443 22222221 111111 12222 2567899999999999998
Q ss_pred hhcc
Q 041227 1204 TYDE 1207 (1468)
Q Consensus 1204 t~de 1207 (1468)
|+..
T Consensus 531 tF~v 534 (594)
T PF05667_consen 531 TFTV 534 (594)
T ss_pred HHHH
Confidence 8753
No 93
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.70 E-value=34 Score=40.51 Aligned_cols=135 Identities=24% Similarity=0.296 Sum_probs=92.8
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 041227 980 HEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKR 1059 (1468)
Q Consensus 980 ~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~ 1059 (1468)
.-|-.++|.|.+.|.-||...|.-|...+.|-.|---++-.|-----..-.+|-.. .....|+-++++++|--|.+
T Consensus 133 dkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL----~Qtq~q~KE~e~m~qne~~k 208 (305)
T PF14915_consen 133 DKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDL----SQTQCQIKEIEHMYQNEQDK 208 (305)
T ss_pred HHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHH
Confidence 33445678888888888888888777777776665555544433222233333333 36677888888888877776
Q ss_pred HhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHH
Q 041227 1060 WLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEA 1132 (1468)
Q Consensus 1060 wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~ 1132 (1468)
.+ .|. +.-+++-|-..-||.-|.=||.|--..|.....-|--.-..|..|.|+.+.+-.
T Consensus 209 v~------k~~--------~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~a 267 (305)
T PF14915_consen 209 VN------KYI--------GKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQA 267 (305)
T ss_pred HH------HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 62 233 233566677788999999999999999998888888888888888666665433
No 94
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=90.64 E-value=0.63 Score=46.47 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=66.2
Q ss_pred ccccccCC----ccceeEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-ec-cCC
Q 041227 5 IWELQVPK----GWDKLVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-GSS 78 (1468)
Q Consensus 5 FhATQVP~----GwDkLfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-GSS 78 (1468)
..|.++|. |.+.-||-++....++...|| .|..| .||+|--+.........++.++...|.| .. +.+
T Consensus 23 i~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kT---kv~~~----~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~ 95 (124)
T cd08389 23 IRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKT---KVQRG----PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMR 95 (124)
T ss_pred EEecCCCchhcCCCCCcEEEEEEccCCcceeec---ccccC----CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcc
Confidence 35667772 555667665544444544443 45554 4999977777755666778888888888 33 456
Q ss_pred CccccceeeechhhhccccCccceeeccC
Q 041227 79 RSGIVGEALVNLASYMNSKTSVPLTLPLK 107 (1468)
Q Consensus 79 RSgiLGEasINLAdYaeAtkP~sVSLPLK 107 (1468)
+..+||+|.|+|+++ +...+.+.-+||+
T Consensus 96 ~~~~lG~~~i~L~~l-~~~~~~~~w~~L~ 123 (124)
T cd08389 96 KERLIGEKVVPLSQL-NLEGETTVWLTLE 123 (124)
T ss_pred cCceEEEEEEecccc-CCCCCceEEEeCC
Confidence 788999999999999 5566788888875
No 95
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.61 E-value=62 Score=41.56 Aligned_cols=68 Identities=19% Similarity=0.149 Sum_probs=33.9
Q ss_pred HHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccc
Q 041227 1142 EEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKD 1209 (1468)
Q Consensus 1142 e~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere 1209 (1468)
.+-+-+|+-|..+..++-.-+..|+.|+..-+..+--...+-.+--.+-+.||.-..++|+..-.+=+
T Consensus 178 q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe 245 (629)
T KOG0963|consen 178 QEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELE 245 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555554444444444444444444444555555555554444433
No 96
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.16 E-value=74 Score=42.32 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=51.6
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchh
Q 041227 1094 SNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKS 1169 (1468)
Q Consensus 1094 ~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~ 1169 (1468)
...++.+++.+|...++.+--..+....++.+-.+.++.|+..+.-++.+++.-.. .+.++.+++..+-..+
T Consensus 460 s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~----~~~~~~qs~~~~~~~l 531 (980)
T KOG0980|consen 460 SIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR----TLSNLAQSHNNQLAQL 531 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHH
Confidence 33367777777777666666666666667888888899999999988888875443 4777777777666544
No 97
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.13 E-value=1.1 Score=48.65 Aligned_cols=116 Identities=18% Similarity=0.285 Sum_probs=53.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhh
Q 041227 1328 LERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRL 1407 (1468)
Q Consensus 1328 lqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rl 1407 (1468)
-..+..+++-+.+|+.+|.++.-.+|.+-..|-.++.+...+.+.=......|..++. ....|+.++..|
T Consensus 66 ~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~----------~~~~L~~~~~~l 135 (194)
T PF08614_consen 66 SAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEA----------ELAQLEEKIKDL 135 (194)
T ss_dssp ------------------------------------------------HHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3456677888889999999999999999998888888888777654444444444433 345677788888
Q ss_pred cCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 041227 1408 EGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRA 1456 (1468)
Q Consensus 1408 e~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~ 1456 (1468)
+..+-.+..... -|+-|+.-+.=+++.+..+...|+.||.+|..|.
T Consensus 136 ~~~l~ek~k~~e---~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 136 EEELKEKNKANE---ILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777665 8899999999999999999999999999999885
No 98
>PRK09039 hypothetical protein; Validated
Probab=89.98 E-value=7.8 Score=45.89 Aligned_cols=123 Identities=25% Similarity=0.308 Sum_probs=70.3
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHH
Q 041227 1324 LKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEK 1403 (1468)
Q Consensus 1324 LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeK 1403 (1468)
|-..-+....++.+|-.++..+..++..+.+|++.+....+...++.+.=..+.+++..+....+ ...-.
T Consensus 69 L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~s----------e~~~~ 138 (343)
T PRK09039 69 LSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSA----------RALAQ 138 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH----------HhhHH
Confidence 44556778899999999999999999999999998886544433444444444333333333222 22223
Q ss_pred HHhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 041227 1404 VLRLEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSR-AQAI 1459 (1468)
Q Consensus 1404 l~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r-~q~l 1459 (1468)
+.+|...+.| +-.|-|.|..+|.-......+.+.+|..|+++.+....+ ++.|
T Consensus 139 V~~L~~qI~a---Lr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 139 VELLNQQIAA---LRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322 222233444445555555555666666666666655532 5444
No 99
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.72 E-value=51 Score=39.26 Aligned_cols=174 Identities=28% Similarity=0.360 Sum_probs=84.7
Q ss_pred HHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHH--hHHHHHHHHH--HHHHhHhhhhhhhhH
Q 041227 994 LQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEA--QKVETKQKLQ--DMQKRWLGVQEECEY 1069 (1468)
Q Consensus 994 ~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~--qk~~~kqk~q--e~q~~wse~Qee~e~ 1069 (1468)
.+|.-+|..|..+-+- .+.+++..+..+..|+.+++.+...--. ++++...-+- -+=+|+-.++-+.++
T Consensus 23 ~~l~~~~~sL~qen~~-------Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~ 95 (310)
T PF09755_consen 23 EQLRKRIESLQQENRV-------LKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKET 95 (310)
T ss_pred HHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677666665443 3455666667777777777765543221 1111111000 011222222222222
Q ss_pred HhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhh-hhhhhhhHHHHHHHHHhHHHHhhhhh
Q 041227 1070 LKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKG-FSSLSMKVEALEEKYLSMLEEISSKE 1148 (1468)
Q Consensus 1070 Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~-f~~~~k~Ve~LE~kl~s~le~issKE 1148 (1468)
|-. +++.--|.|. ++|++-...||..|.+|++ .|..=|.+ +.-..+.+..|+....
T Consensus 96 L~~---~~e~EEE~lt---n~L~rkl~qLr~EK~~lE~-------~Le~EqE~~V~kL~k~i~~Le~e~~---------- 152 (310)
T PF09755_consen 96 LAL---KYEQEEEFLT---NDLSRKLNQLRQEKVELEN-------QLEQEQEYLVNKLQKKIERLEKEKS---------- 152 (310)
T ss_pred HHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHH----------
Confidence 210 1111112222 6778888888877776554 44443444 3345555666665544
Q ss_pred hHhhHHHHHHHHHhhhhcchhhhH-HHHHHHhhhhhHHHhhhHHHHHHHHHHhhh
Q 041227 1149 KALNLELDALLHENRKHKDKSVTE-ESLLNQMYMEKTVEAQNLQREVAHLTEQIS 1202 (1468)
Q Consensus 1149 k~l~~ELe~l~qE~~~~~ek~~~~-~~llnq~~~Ek~vevenLqrEv~~Lt~QiS 1202 (1468)
..-.+|+.|-.|.-.++--+..+ ++|+|++.+= +..|..|=..|..++.
T Consensus 153 -~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kq----m~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 153 -AKQEELERLRREKVDLENTLEQEQEALVNRLWKQ----MDKLEAEKRRLQEKLE 202 (310)
T ss_pred -HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHc
Confidence 34456666666665555544433 4677776542 2234444444444444
No 100
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.57 E-value=78 Score=41.17 Aligned_cols=363 Identities=25% Similarity=0.272 Sum_probs=185.4
Q ss_pred hhHHHHHHHhhHHHHHhhhhhhhccchhhh--ccchhhhhhHHHHHHHH---HHHHHHhHHHHHHHHHHHHHhHhhhhhh
Q 041227 992 ENLQLSERICGLEAQLRYLTNERESSRLEL--ENSATHAMSLQDEIRRL---EAEMEAQKVETKQKLQDMQKRWLGVQEE 1066 (1468)
Q Consensus 992 En~qLserisgLEaql~~lt~E~es~~l~l--~nS~s~~~~Lqdei~r~---~~e~e~qk~~~kqk~qe~q~~wse~Qee 1066 (1468)
+.-.|-.-|-.=|||| |.+|++...|.= .|+. ++..+- .+++..-+.++-|.+-..-++.--+=-|
T Consensus 354 ~i~~Ln~~leaReaql--l~~e~~ka~lee~~~n~~-------~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kE 424 (961)
T KOG4673|consen 354 EIKMLNNALEAREAQL--LADEIAKAMLEEEQLNSV-------TEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKE 424 (961)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhH-------HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444445555 445555544433 3333 332222 2356666777777777777777666677
Q ss_pred hhHHhhcCc----hhhhhhhh-HHHHhh----hHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 041227 1067 CEYLKVANP----KLQATAEG-LIEECS----LLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKY 1137 (1468)
Q Consensus 1067 ~e~Lr~~N~----kLQaT~e~-lieec~----slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl 1137 (1468)
-++||+.-- .|++..-+ ..-||. .|+.--..|-|+.+.=......|-||-.++ +-|++|.
T Consensus 425 RDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~-----------etl~~K~ 493 (961)
T KOG4673|consen 425 RDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEA-----------ETLEEKK 493 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh-----------hHHHHHh
Confidence 788866433 34443333 444453 344444556666555555555555544433 4566666
Q ss_pred HhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHH--HhhhHHHHHHHHHHhhhhhhcccccchhHH
Q 041227 1138 LSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTV--EAQNLQREVAHLTEQISATYDEKDGTHSEA 1215 (1468)
Q Consensus 1138 ~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~v--evenLqrEv~~Lt~QiSat~dere~~~s~a 1215 (1468)
.-......+-+..|..=| --+=.+||+. .|..++.||.+- .
T Consensus 494 ge~i~~L~sE~~~lk~il--------------------~~Kee~Ek~~~E~I~k~~ae~~rq-------~---------- 536 (961)
T KOG4673|consen 494 GELITKLQSEENKLKSIL--------------------RDKEETEKLLQETIEKHQAELTRQ-------K---------- 536 (961)
T ss_pred hhHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHHHHHH-------H----------
Confidence 644443333333332211 1122223221 233444444331 1
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHh----hhCc
Q 041227 1216 VLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLE----DVKP 1291 (1468)
Q Consensus 1216 v~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle----~~kS 1291 (1468)
.+.+.+|++.+.||+.+--.|+-+--+.+ |||++-.-| ---+|+.++||.--++.++.-|- .+--
T Consensus 537 -~~~~~sr~~~~~le~~~~a~qat~d~a~~---Dlqk~nrlk-------Qdear~~~~~lvqqv~dLR~~L~~~Eq~aar 605 (961)
T KOG4673|consen 537 -DYYSNSRALAAALEAQALAEQATNDEARS---DLQKENRLK-------QDEARERESMLVQQVEDLRQTLSKKEQQAAR 605 (961)
T ss_pred -HhhhhHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456777777777666555554444333 555544333 13467888888877777665442 3344
Q ss_pred chHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHH
Q 041227 1292 NEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKA 1371 (1468)
Q Consensus 1292 neeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLka 1371 (1468)
+|+-||+-|++|--.|-+++.--+-++-+... -|..|=.-|-+|+.-|..+-..-+|+|.+|
T Consensus 606 rEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~------TTrPLlRQIE~lQ~tl~~~~tawereE~~l------------ 667 (961)
T KOG4673|consen 606 REDMFRGEIEDLQRRLQAAERRCEELIQQVPE------TTRPLLRQIEALQETLSKAATAWEREERSL------------ 667 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------cccHHHHHHHHHHHHHhhhhhHHHHHHHHH------------
Confidence 67777777777765555444433333322222 234455556678888888777777777654
Q ss_pred HHhhHHHhhhhHHHHHhh--------hhhhhhhhhH-----HHHHHHhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHH
Q 041227 1372 ERISFMQKISTSQQVVSE--------LDDCKRKKVA-----LQEKVLRLEGDLAAIEALGSQEAALKNELAQIRRENSQF 1438 (1468)
Q Consensus 1372 ek~~~~~kis~~q~~~se--------led~k~sk~s-----leeKl~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~ 1438 (1468)
.+|+++-|.-+.- -++.=+.+++ ++--++|-|. . ++..++-+-+|-+...|.+|.-|
T Consensus 668 -----~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~--~---~l~~~le~e~nr~~~~~~e~~~~ 737 (961)
T KOG4673|consen 668 -----NERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQ--G---QLSKSLEKERNRAAENRQEYLAA 737 (961)
T ss_pred -----HHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHH--H---HHHHHHHHHHHHHhhhHHHHHHH
Confidence 2222222211110 0111112221 1222333332 2 45555556677777777777777
Q ss_pred HHHHHHHHHHHH
Q 041227 1439 QRRIKCLEKEKE 1450 (1468)
Q Consensus 1439 q~ki~~le~E~e 1450 (1468)
|-.++.|+.+..
T Consensus 738 qeE~~~l~~r~~ 749 (961)
T KOG4673|consen 738 QEEADTLEGRAN 749 (961)
T ss_pred HHHHHHHHHHHH
Confidence 777776665543
No 101
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.44 E-value=12 Score=46.82 Aligned_cols=201 Identities=30% Similarity=0.372 Sum_probs=132.7
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHH
Q 041227 1185 VEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSE 1264 (1468)
Q Consensus 1185 vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~ 1264 (1468)
.+|+.|+.||+.||..+..|-.++-.+| ++=++| | ..|--|+-.+.++ +..+|..+.|-.. +..-
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~qaA-eyGL~l--L-eeK~~Lkqq~eEl-------eaeyd~~R~Eldq----tkea 72 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQAA-EYGLEL--L-EEKEDLKQQLEEL-------EAEYDLARTELDQ----TKEA 72 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--H-HHHHHHHHHHHHH-------HHHHHHHHHHHHH----HHHH
Confidence 4789999999999999988877765443 222222 2 2344444444444 3444444444332 2334
Q ss_pred HHHHhhhHHHHHhhHH-HHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHH----hhhhhHHH
Q 041227 1265 LAAARQNQEVLMADHE-KLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERT----AQFQDEVL 1339 (1468)
Q Consensus 1265 L~askqn~emL~~d~e-k~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~----~~lqdEv~ 1339 (1468)
|..++-+|-....|-+ .=--||...-+.|.-+-..|-+||-.||-..-+---+-+|.-.+..-.++. +.++++=.
T Consensus 73 l~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~ 152 (772)
T KOG0999|consen 73 LGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR 152 (772)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Confidence 4556666555555443 334578888899999999999999999844443333344444444333333 34566777
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhh
Q 041227 1340 SLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRL 1407 (1468)
Q Consensus 1340 ~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rl 1407 (1468)
.||.+|.+.||--.|| + .+|-+|-.+++++-.-||.+-..-=|.|..|+-.--+++-+.-|
T Consensus 153 rlr~elKe~KfRE~Rl------l-seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~ell 213 (772)
T KOG0999|consen 153 RLRDELKEYKFREARL------L-SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELL 213 (772)
T ss_pred HHHHHHHHHHHHHHHH------H-HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 7999999999977665 2 37888999999998889998888888898888877777765433
No 102
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.19 E-value=18 Score=42.76 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=58.4
Q ss_pred hhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhH
Q 041227 990 EEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEY 1069 (1468)
Q Consensus 990 e~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~ 1069 (1468)
..|..+|-.+|..|+.-+..++-|.|-....+..++-.=. .+.++..+++.|+.+....|-|+|++.--
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~-----------~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQR-----------QLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999998877776666554333 34455679999999999999999999888
Q ss_pred HhhcC
Q 041227 1070 LKVAN 1074 (1468)
Q Consensus 1070 Lr~~N 1074 (1468)
||.-|
T Consensus 302 lR~~~ 306 (306)
T PF04849_consen 302 LRKRT 306 (306)
T ss_pred hhCCC
Confidence 87543
No 103
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.10 E-value=1e+02 Score=41.87 Aligned_cols=594 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhccccccCCCCCCC
Q 041227 553 ENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLALLFKLKESGKDLLTGGASSHE 632 (1468)
Q Consensus 553 ~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~~~~~~~~~s~~~ 632 (1468)
+|++.|=+.+++++ .+-.|-+.||.++--+|.+|. ....|.|...
T Consensus 143 kElt~LFEEISgSi----------------ElK~EYeelK~E~~kAE~~t~-------~~~~kkk~I~------------ 187 (1141)
T KOG0018|consen 143 KELTALFEEISGSI----------------ELKPEYEELKYEMAKAEETTT-------GNYKKKKSIA------------ 187 (1141)
T ss_pred HHHHHHHHHHhhhh----------------hhhHHHHHHHHHHHHHHHHHh-------hHhhhhhHHH------------
Q ss_pred CCCCCccccchhHHHHHhHhHhhhHHHHHHHHHHHHhhh--------hcccccchHHHHHHhhhhhhcchhhHhHhhHHH
Q 041227 633 CPDNKSVFESESEVVQLKSQICKLEEELQERNALIERLS--------TYENRSDDLENQLQAFKDKVCYLDGELCKSRFR 704 (1468)
Q Consensus 633 ~~~~~~~~~~es~~~~l~~q~~~leee~~~~~~~~~~~~--------~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~ 704 (1468)
.+..+-|-+++.-|.-.+-+++...... -.++...++-..+...+..+..+..+..+--.+
T Consensus 188 -----------aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~e 256 (1141)
T KOG0018|consen 188 -----------AEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKERE 256 (1141)
T ss_pred -----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 041227 705 AQEQEVQIAALQQQLELFQGKEAESKDHPAAVCPLCKIYESDDFLEMSRLLSELYEQIQLSLANLKKQQLLQQPSAFGSD 784 (1468)
Q Consensus 705 ~~~~~~ei~~l~~~l~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~s~~~sel~~ql~~~l~~~kk~~~~~~~~~~~~~ 784 (1468)
+..+-.+......++-.+...-.+...-++.-.-+++.....+- .--=..-++..|++.++
T Consensus 257 i~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~------~k~rl~~~~k~i~~~kk------------- 317 (1141)
T KOG0018|consen 257 IRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASH------LKKRLEEIEKDIETAKK------------- 317 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhcc------chhHHHHhhhhHHHHHH-------------
Q ss_pred CCCCCCCccchhhHHHHHHHHhhHHHHHHHHHHhhhchhHhhhhhh-hHHHhhccccccccCCCCCCCcccccccccccc
Q 041227 785 KSIVPTSTDLTTQKERVEAILNNFMELKRLFEEKINLSEDEIQSKK-EITAVEANSDVDQNGLQGPDSNEIVLSTHIHGV 863 (1468)
Q Consensus 785 ~~~~~~~~~~~~qk~~ve~~l~~~~~l~~l~e~~~~~~e~e~~s~~-~~~~~~~~~~~~~~~l~~~~~~en~~~~~~~~~ 863 (1468)
+..+++..++..-+.+..+++.-++=-.+.++.-+.+. ++.+-+ +..-.-..|..+...++ -..+
T Consensus 318 --------~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d-~~~~ey~rlk~ea~~~~-----~~el 383 (1141)
T KOG0018|consen 318 --------DYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKD-DQVEEYERLKEEACKEA-----LEEL 383 (1141)
T ss_pred --------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcch-HHHHHHHHHHHHHhhhh-----HHHH
Q ss_pred ccccccccccchhhHHHH---HHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccch
Q 041227 864 DSQHMEFKSDVTETAKEL---LEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVA 940 (1468)
Q Consensus 864 ~~~~~e~e~~~~~l~~e~---~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~ 940 (1468)
+-+|..+.++-..|++++ .+..+.+..++..+......+..|.-+..+++.-..++-.....|+......-.+..--
T Consensus 384 ~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~ 463 (1141)
T KOG0018|consen 384 EVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYEL 463 (1141)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHH
Q ss_pred hhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhh-------------------------------------
Q 041227 941 SKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEME------------------------------------- 983 (1468)
Q Consensus 941 skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE------------------------------------- 983 (1468)
..=|.+++. -.+.++-|.|-+.....-+ ..+|
T Consensus 464 n~eL~~~~~--ql~das~dr~e~sR~~~~~---------eave~lKr~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~d 532 (1141)
T KOG0018|consen 464 NEELVEVLD--QLLDASADRHEGSRRSRKQ---------EAVEALKRLFPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMD 532 (1141)
T ss_pred HHHHHHHHH--HHHhhhhhhcccHHHHHHH---------HHHHHHHHhCCCccchhhhcccccHHHHHHHHHHHHhcccc
Q ss_pred --------------------------------------------------------------------------------
Q 041227 984 -------------------------------------------------------------------------------- 983 (1468)
Q Consensus 984 -------------------------------------------------------------------------------- 983 (1468)
T Consensus 533 aIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr~~~g~rlv~Dvi~ye~e~eka~~~a~gn~Lvcds~e~ 612 (1141)
T KOG0018|consen 533 AIIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLRELGGVRLVIDVINYEPEYEKAVQFACGNALVCDSVED 612 (1141)
T ss_pred eEEeccHHHHHHHHHHHHHhccCCccccchhhhhcCcccccccCcCCeEEEEEecCCCHHHHHHHHHHhccceecCCHHH
Q ss_pred ---------------------hhhhhh-----------hhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhH
Q 041227 984 ---------------------VHLHEL-----------EEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSL 1031 (1468)
Q Consensus 984 ---------------------~hls~L-----------e~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~L 1031 (1468)
+|=+.| |++..+|-++=-.|.-||..+-+ |.. ...--++.+.-|
T Consensus 613 Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~~~wdek~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~l 688 (1141)
T KOG0018|consen 613 ARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSGAKWDEKEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGL 688 (1141)
T ss_pred HHHhhhcccccceEEEeeeeEEeccceecCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHH
Q 041227 1032 QDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAV 1111 (1468)
Q Consensus 1032 qdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~ 1111 (1468)
+-.|+-+..+|++++..+-++.++.|+.- +-.+..-.+.+-++.-.+......-+|..+...
T Consensus 689 e~~~~~~~~~~~~~k~~l~~~~~El~~~~------------------~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ 750 (1141)
T KOG0018|consen 689 EMRLKYSKLDLEQLKRSLEQNELELQRTE------------------SEIDEFGPEISEIKRKLQNREGEMKELEERMNK 750 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHH
Q 041227 1112 LEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQ 1191 (1468)
Q Consensus 1112 lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLq 1191 (1468)
.|.+. |.+||.+|.+==..|- |..+..+...=..|-.++.-|+ =||+.-||- +..+
T Consensus 751 ved~i------f~~f~~~igv~ir~Ye---------e~~~~~~~a~k~~ef~~q~~~l------~~~l~fe~~---~d~~ 806 (1141)
T KOG0018|consen 751 VEDRI------FKGFCRRIGVRIREYE---------ERELQQEFAKKRLEFENQKAKL------ENQLDFEKQ---KDTQ 806 (1141)
T ss_pred HHHHH------HHHhhhhcCeeeehHH---------HHHHHHHHHHHHHHHHHHHHHH------hhhhhheec---ccHH
Q ss_pred HHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhh
Q 041227 1192 REVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQN 1271 (1468)
Q Consensus 1192 rEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn 1271 (1468)
+.|+.+..-++..+.+=+.+--+--.=+.++-.. +++|. -+ ++++.-++..+...+..-..-++.++
T Consensus 807 ~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k~--k~~~~~~~~e~~e~~k~~~~~~~~~t--------- 873 (1141)
T KOG0018|consen 807 RRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-KN--KSKFEKKEDEINEVKKILRRLVKELT--------- 873 (1141)
T ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred HHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHH
Q 041227 1272 QEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLT 1318 (1468)
Q Consensus 1272 ~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~ 1318 (1468)
||.+-|-.+|.++..-+|||+-++
T Consensus 874 -----------------------kl~~~i~~~es~ie~~~~er~~lL 897 (1141)
T KOG0018|consen 874 -----------------------KLDKEITSIESKIERKESERHNLL 897 (1141)
T ss_pred -----------------------HHhhhhhhhhhHHHHHHHHHHHHH
No 104
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=88.86 E-value=58 Score=38.70 Aligned_cols=146 Identities=25% Similarity=0.311 Sum_probs=106.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhH
Q 041227 1246 NLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLK 1325 (1468)
Q Consensus 1246 ~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~Lk 1325 (1468)
+++++...+..|=..|..+.-+.|.. .-.|-.++|-||+.|..||-.-=--|. -++.|..-|.
T Consensus 14 Eidtik~q~qekE~ky~ediei~Kek----------n~~Lqk~lKLneE~ltkTi~qy~~QLn-------~L~aENt~L~ 76 (305)
T PF14915_consen 14 EIDTIKNQNQEKEKKYLEDIEILKEK----------NDDLQKSLKLNEETLTKTIFQYNGQLN-------VLKAENTMLN 76 (305)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhHHHHHHHHHHHhhhHH-------HHHHHHHHHh
Confidence 34555656666666666555554443 333555788899999998866544444 5778887777
Q ss_pred HHH----HHHhhhhhHHHHHHHHHHHHhh-------hhHHHHHHHHhhhh-----------chHHHHHHHhhHHHhhhhH
Q 041227 1326 VQL----ERTAQFQDEVLSLKKLLNEAKF-------ENERLEASFQILSG-----------DYEELKAERISFMQKISTS 1383 (1468)
Q Consensus 1326 vQl----qk~~~lqdEv~~lk~sL~~~kf-------ek~rLe~sl~~~S~-----------e~eeLkaek~~~~~kis~~ 1383 (1468)
..| |.-..|+-||-..++.|.+|-. -+.-||-.||---. +.-.|++...++.+++|..
T Consensus 77 SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLska 156 (305)
T PF14915_consen 77 SKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKA 156 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHH
Confidence 777 5568899999999988887744 45556666665554 4446777789999999999
Q ss_pred HHHHhhhhh-hhhhhhHHHHHHHhhc
Q 041227 1384 QQVVSELDD-CKRKKVALQEKVLRLE 1408 (1468)
Q Consensus 1384 q~~~seled-~k~sk~sleeKl~rle 1408 (1468)
+.-.+-|+. +.+++-+|.+|-+-||
T Consensus 157 esK~nsLe~elh~trdaLrEKtL~lE 182 (305)
T PF14915_consen 157 ESKFNSLEIELHHTRDALREKTLALE 182 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 8889999999988776
No 105
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.86 E-value=94 Score=41.16 Aligned_cols=77 Identities=19% Similarity=0.174 Sum_probs=51.4
Q ss_pred HHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhh
Q 041227 1041 EMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLG 1117 (1468)
Q Consensus 1041 e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~ 1117 (1468)
+.+.+..-+|+..+.+=.+.+.+-+..+.+..-++.|--+...+-.+|+.|+.-......-.-++|+..+-|++..+
T Consensus 810 ~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qad 886 (970)
T KOG0946|consen 810 ELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQAD 886 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhc
Confidence 33444444555555555666666666666666666665566666677888887777777778888888888885444
No 106
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.85 E-value=83 Score=40.49 Aligned_cols=299 Identities=22% Similarity=0.231 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHH
Q 041227 1034 EIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLE 1113 (1468)
Q Consensus 1034 ei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE 1113 (1468)
-+++++.+.+++-.++.+++.+++..-...-++..-.|..-|+..-- ...--.+++| ..+--|=
T Consensus 16 dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k--~~~~llK~yQ--------------~EiD~Lt 79 (629)
T KOG0963|consen 16 DLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLK--MVNPLLKSYQ--------------SEIDNLT 79 (629)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHH--HHHHHHHHHH--------------HHHHHHH
Confidence 35788888889999999888887766555444544444433322110 1111112222 2233333
Q ss_pred HHhhhhhhhhhhhhhhHHH----------HHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhh
Q 041227 1114 AQLGESEKGFSSLSMKVEA----------LEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEK 1183 (1468)
Q Consensus 1114 ~kL~eS~~~f~~~~k~Ve~----------LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek 1183 (1468)
+.=..+...|++.|+++-. ....+..... .-.|+++..+.+ +.+.+.+
T Consensus 80 kRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~---------------~~~e~~~lk~~l---ee~~~el---- 137 (629)
T KOG0963|consen 80 KRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQK---------------ASEENEELKEEL---EEVNNEL---- 137 (629)
T ss_pred HHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhh---------------hhhhHHHHHHHH---HHHHHHH----
Confidence 4445566778888888433 2233332222 222233222211 1222222
Q ss_pred HHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhh-hh----HHHHHHHHHHHhHhhhhhcchhhhhhh-----
Q 041227 1184 TVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRA-DK----AVLEAALQEVQGKLKLSESNLGTLRME----- 1253 (1468)
Q Consensus 1184 ~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrA-dk----A~lE~~l~ev~~k~~~~es~l~~l~~E----- 1253 (1468)
..+++++..|..|-..+--+-...+.-.-++|.++-..++ +- +.|-+..+.+++|+...+.....|+.=
T Consensus 138 -~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~ 216 (629)
T KOG0963|consen 138 -ADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQ 216 (629)
T ss_pred -hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2333444444444444444444445555556666655443 22 334455556677777777777777431
Q ss_pred -----HHHH-----------HHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhh-hhhhhhccccccchHHHHH
Q 041227 1254 -----SQTK-----------IQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFR-GTIRGLELKLKASDYERLQ 1316 (1468)
Q Consensus 1254 -----s~~k-----------i~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk-~t~~~LElklk~s~yErqq 1316 (1468)
.+.+ |.=++++|+.+.+.-..|-...+.++.=+.-+.|.-..=+ .-|+.+...|..-|-+-+|
T Consensus 217 ~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~ 296 (629)
T KOG0963|consen 217 NELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQ 296 (629)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHH
Confidence 1122 3446778888888888888889998888777766543332 3467777777777777788
Q ss_pred HHHHhhhhHHHHHH-HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHH
Q 041227 1317 LTEEISSLKVQLER-TAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAE 1372 (1468)
Q Consensus 1317 ~~eE~s~LkvQlqk-~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkae 1372 (1468)
+..+|-.++.-+++ ++..-..|-+|-+.+.+...+.+.|+.-|+.- -+|+++|.+
T Consensus 297 L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~E 352 (629)
T KOG0963|consen 297 LSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKE 352 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHH
Confidence 88888777766654 34555667778888888888888888888877 589999876
No 107
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.84 E-value=26 Score=38.84 Aligned_cols=135 Identities=22% Similarity=0.256 Sum_probs=74.5
Q ss_pred hhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q 041227 982 MEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWL 1061 (1468)
Q Consensus 982 lE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~ws 1061 (1468)
.+..|...|.-+.+|+..|.+...++|.|.. ..++.+...-+-...++.+-.++++
T Consensus 45 q~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~---------------------~LR~~q~~~r~~~~klk~~~~el~k--- 100 (194)
T PF15619_consen 45 QEKALQKYEDTEAELPQLLQRHNEEVRVLRE---------------------RLRKSQEQERELERKLKDKDEELLK--- 100 (194)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4568889999999999999999888876643 3332222211111122222222222
Q ss_pred hhhhhhhHHhhcCchhhhhhh--hHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhh----hhhhHHHHHH
Q 041227 1062 GVQEECEYLKVANPKLQATAE--GLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSS----LSMKVEALEE 1135 (1468)
Q Consensus 1062 e~Qee~e~Lr~~N~kLQaT~e--~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~----~~k~Ve~LE~ 1135 (1468)
++....+|+-.++ +|.+ +.-|+.....+...-.+-......|+-+++-+.+.|.- -.+.+-.+..
T Consensus 101 --------~~~~l~~L~~L~~dknL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~ 171 (194)
T PF15619_consen 101 --------TKDELKHLKKLSEDKNLAE-REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQE 171 (194)
T ss_pred --------HHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2222233433333 4443 66666666666666666666666666666666555543 2334555556
Q ss_pred HHHhHHHHhhhhhh
Q 041227 1136 KYLSMLEEISSKEK 1149 (1468)
Q Consensus 1136 kl~s~le~issKEk 1149 (1468)
++..++.+|..-.+
T Consensus 172 ~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 172 EVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665554333
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.67 E-value=16 Score=41.94 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHH
Q 041227 874 VTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIM 933 (1468)
Q Consensus 874 ~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~ 933 (1468)
++.++.+......+++.....+.-.+.|+++++..-..++..+.++++++++++..+-.+
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~ 71 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEI 71 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444444444455555666666666666666666666666665555333
No 109
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.46 E-value=4.9 Score=48.03 Aligned_cols=109 Identities=20% Similarity=0.383 Sum_probs=84.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHH
Q 041227 1096 AELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESL 1175 (1468)
Q Consensus 1096 ~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~l 1175 (1468)
.+-|.---.+|.+-.-++. .|.+.-.-+.-|-..++..++.|.++||.||.-|+.++++.+....++..+
T Consensus 216 kDWR~hleqm~~~~~~I~~-------~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~--- 285 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIES-------ALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEV--- 285 (359)
T ss_pred chHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---
Confidence 4455444444444444444 344445556668899999999999999999999999999999999888554
Q ss_pred HHHhhhhhHHHhhhHHHHHHHHHHhhhhhh---cccccchhHH
Q 041227 1176 LNQMYMEKTVEAQNLQREVAHLTEQISATY---DEKDGTHSEA 1215 (1468)
Q Consensus 1176 lnq~~~Ek~vevenLqrEv~~Lt~QiSat~---dere~~~s~a 1215 (1468)
..-|.+-..-|..+-+++..+|+++..+. +||+...+|+
T Consensus 286 -~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~ 327 (359)
T PF10498_consen 286 -QEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDG 327 (359)
T ss_pred -HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 67788889999999999999999887765 6787777776
No 110
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.43 E-value=93 Score=40.55 Aligned_cols=160 Identities=20% Similarity=0.213 Sum_probs=93.7
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHh----------HHHHhhhhhhHhhHHHHHHHHH
Q 041227 1092 QKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLS----------MLEEISSKEKALNLELDALLHE 1161 (1468)
Q Consensus 1092 Q~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s----------~le~issKEk~l~~ELe~l~qE 1161 (1468)
|....+|-.---.....+..||..|-.....--.|++.|+.|-..|.- .....+.-=+.+.-|-..+.-+
T Consensus 435 q~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~e 514 (786)
T PF05483_consen 435 QGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALE 514 (786)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333334433334445566678888888888888899999998877762 2222222223333344444444
Q ss_pred hhhhcchhhhHHHHHHHhhhhhH-HHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhh-hhh---hhHHHHHHHHHH
Q 041227 1162 NRKHKDKSVTEESLLNQMYMEKT-VEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSH-LRA---DKAVLEAALQEV 1236 (1468)
Q Consensus 1162 ~~~~~ek~~~~~~llnq~~~Ek~-vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~-LrA---dkA~lE~~l~ev 1236 (1468)
-+++.+.+ -.++..-||+ -.|+||+.+=.+|...+.+.+++=...- .||.+ |-. .-...+.....-
T Consensus 515 lKk~qedi-----~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~----~Ev~~kl~ksEen~r~~e~e~~~k 585 (786)
T PF05483_consen 515 LKKQQEDI-----NNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKG----EEVKCKLDKSEENARSIECEILKK 585 (786)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHhhHHHHHHHhhh
Confidence 45555544 2334444444 3678888888888877777766543322 24443 111 123355555666
Q ss_pred HhHhhhhhcchhhhhhhHHHHHHH
Q 041227 1237 QGKLKLSESNLGTLRMESQTKIQQ 1260 (1468)
Q Consensus 1237 ~~k~~~~es~l~~l~~Es~~ki~~ 1260 (1468)
..++..+++.+.+|++.-++|.+.
T Consensus 586 ~kq~k~lenk~~~LrKqvEnk~K~ 609 (786)
T PF05483_consen 586 EKQMKILENKCNNLRKQVENKNKN 609 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 678888888888888866666443
No 111
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.15 E-value=28 Score=44.74 Aligned_cols=201 Identities=14% Similarity=0.175 Sum_probs=107.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHH-HHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhh
Q 041227 1040 AEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLI-EECSLLQKSNAELRKQKVNLHEHCAVLEAQLGE 1118 (1468)
Q Consensus 1040 ~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~li-eec~slQ~~~~eLr~qklelh~~~t~lE~kL~e 1118 (1468)
.-++.|..++++++.+...++ +..|..|--+-.....+. +....|.......|.+......+...++..+..
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l-------~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEV-------AAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666665555 333333322222333444 556666666666666666666666666666654
Q ss_pred hhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHH
Q 041227 1119 SEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLT 1198 (1468)
Q Consensus 1119 S~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt 1198 (1468)
.... .... . -+.+.+ .++.++++-+.+--.+...-.-+-..|.++.-.|..+++++..|.
T Consensus 270 ~~~~-~~~~------~-~~~~~~------------~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~ 329 (754)
T TIGR01005 270 GGSL-DVLP------E-VLSSQL------------KLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLD 329 (754)
T ss_pred CCCc-cchh------h-hhcCcc------------cccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 3211 1110 0 000000 112222222222222222222245568888888999999999998
Q ss_pred HhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhh---hcchhhhhhhHHHHHHHHHHHHHHHhh
Q 041227 1199 EQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLS---ESNLGTLRMESQTKIQQLKSELAAARQ 1270 (1468)
Q Consensus 1199 ~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~---es~l~~l~~Es~~ki~~l~~~L~askq 1270 (1468)
.||. .|..++....=.++..+++..+.|++.+.+.+.++..+ +.++..|+.+.+.+=+-|..=|+..++
T Consensus 330 ~~i~---~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 330 AQIR---SELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8874 34445544444455566666666666666666665543 666777777777666666554444443
No 112
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.60 E-value=87 Score=39.29 Aligned_cols=115 Identities=19% Similarity=0.193 Sum_probs=67.1
Q ss_pred HHhHHhHHHHhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhcccc
Q 041227 544 WRSRIAEKEENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLALLFKLKESGKDL 623 (1468)
Q Consensus 544 ~~~kls~kE~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~~~~ 623 (1468)
...-++++...+.-++-+|..+....+..-... ..|..+-+..+.-||++.+ +|+=.+.-
T Consensus 492 ~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~--------e~e~~a~~~E~eklE~el~-----------~lnL~s~t- 551 (622)
T COG5185 492 LKHDINELTQILEKLELELSEANSKFELSKEEN--------ERELVAQRIEIEKLEKELN-----------DLNLLSKT- 551 (622)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHH-----------Hhhhhccc-
Confidence 444556666666777777777776655531101 1245555566777777666 22222210
Q ss_pred ccCCCCCCCCCCCCccccchhHHHHHhHhHhhhHHHHHHHHHHHHhhh-hcccccchHHHHHHhhhhhhcchhhHhHhhH
Q 041227 624 LTGGASSHECPDNKSVFESESEVVQLKSQICKLEEELQERNALIERLS-TYENRSDDLENQLQAFKDKVCYLDGELCKSR 702 (1468)
Q Consensus 624 ~~~~~s~~~~~~~~~~~~~es~~~~l~~q~~~leee~~~~~~~~~~~~-~~~~k~~dlel~~~~fk~~~~~le~~l~~~~ 702 (1468)
-|-++|..+++-+.-..++. +++.+--.+--+.-.|-+.+.|+.--++.+.
T Consensus 552 ----------------------------s~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssl 603 (622)
T COG5185 552 ----------------------------SILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSL 603 (622)
T ss_pred ----------------------------hHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhH
Confidence 12245666666666555555 5555556666677777788888877777766
Q ss_pred HHHH
Q 041227 703 FRAQ 706 (1468)
Q Consensus 703 ~~~~ 706 (1468)
+-++
T Consensus 604 edl~ 607 (622)
T COG5185 604 EDLE 607 (622)
T ss_pred HHHH
Confidence 5544
No 113
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.52 E-value=25 Score=41.57 Aligned_cols=140 Identities=18% Similarity=0.300 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhh
Q 041227 1311 DYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSEL 1390 (1468)
Q Consensus 1311 ~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~sel 1390 (1468)
.|=|++....-=.-+.|+ +.+| ...|..-++..+..+..|...+..+..-...|...+..+..++..++...+++
T Consensus 124 ~~aRl~ak~~WYeWR~kl--legL---k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 124 TFARLEAKKMWYEWRMKL--LEGL---KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455555544444445544 2222 33456667788888999999999999999999999999999999999999999
Q ss_pred hhhhhhhh-HHHHHHHhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041227 1391 DDCKRKKV-ALQEKVLRLEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEELKQ 1465 (1468)
Q Consensus 1391 ed~k~sk~-sleeKl~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~elk~ 1465 (1468)
++|...-. .+.++|..+..+. ...++++..++.+=.++..+|....+.+.+|+..++.+|..+.+
T Consensus 199 ~~~d~~eL~~lk~~l~~~~~ei----------~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 199 EDCDPTELDRAKEKLKKLLQEI----------MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HhCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99987642 2334444333222 24455666666666667777777777777777777777765543
No 114
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.47 E-value=1.3e+02 Score=41.26 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=34.7
Q ss_pred HHhHHhHHHHhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHh
Q 041227 544 WRSRIAEKEENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKD 601 (1468)
Q Consensus 544 ~~~kls~kE~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~d 601 (1468)
.+..|.+..+.+...+++|+++.+.-+. .+-.-..|.+|.+.|..-+.||...
T Consensus 1237 lr~~l~~~~e~L~~~E~~Lsdi~~~~~~-----a~~~LesLq~~~~~l~~~~keL~e~ 1289 (1758)
T KOG0994|consen 1237 LRRQLQALTEDLPQEEETLSDITNSLPL-----AGKDLESLQREFNGLLTTYKELREQ 1289 (1758)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhccch-----hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888999888865333 1111234566666666666666543
No 115
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=87.38 E-value=93 Score=39.38 Aligned_cols=321 Identities=17% Similarity=0.259 Sum_probs=179.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhh---hH----HHhhhHH
Q 041227 1119 SEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYME---KT----VEAQNLQ 1191 (1468)
Q Consensus 1119 S~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~E---k~----vevenLq 1191 (1468)
.+-+|...-+.+..++..+..+-++| +.+..+|+.|+....++...+...+-...++-.. +. -.+..|+
T Consensus 92 ~~~rf~ka~~~i~~~~~~l~~~e~~i----~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le 167 (560)
T PF06160_consen 92 DKYRFKKAKQAIKEIEEQLDEIEEDI----KEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELE 167 (560)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHH
Confidence 35577777777887777777666666 4899999999999999998887766555544322 11 1234455
Q ss_pred HHHHHHHHhhhhhhcccccc-hhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhh
Q 041227 1192 REVAHLTEQISATYDEKDGT-HSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQ 1270 (1468)
Q Consensus 1192 rEv~~Lt~QiSat~dere~~-~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askq 1270 (1468)
..+..+-.+.+.-..--+.- ...|=--+..++++-..|+..+..+=.=+ ..++.+.-..+..|-+--.-++.
T Consensus 168 ~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~-------~~l~~~~P~ql~eL~~gy~~m~~ 240 (560)
T PF06160_consen 168 KQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLY-------KELQKEFPDQLEELKEGYREMEE 240 (560)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHhHHHHHHHHHHHHHHHH
Confidence 55555555444333222221 22333334556666666665555543332 22333333333222221111111
Q ss_pred hHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHH-----------H
Q 041227 1271 NQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEV-----------L 1339 (1468)
Q Consensus 1271 n~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv-----------~ 1339 (1468)
.. ..-+|-.+-+-+..++-.-......|..| .+..-+..-..+.++|..|--.+.+=..-.+.| .
T Consensus 241 ~g--y~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~ 316 (560)
T PF06160_consen 241 EG--YYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLE 316 (560)
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 10 11122223333333333333333334333 334445555566777776666655544333333 3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHHhhhh
Q 041227 1340 SLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALGS 1419 (1468)
Q Consensus 1340 ~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a~ea~~~ 1419 (1468)
.++........|..++-.+|++--.+-+..+.=...+..=..........+++-...=..+.+.+..+...|++-+.-..
T Consensus 317 ~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~ 396 (560)
T PF06160_consen 317 HAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQE 396 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666777777777777665444443332222222222222333344555566667788888888888887776665
Q ss_pred hhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1420 QEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQ 1457 (1468)
Q Consensus 1420 ~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q 1457 (1468)
++...|..+|..-..-+.++..++....+..++++
T Consensus 397 ---~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 397 ---EINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888775
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.36 E-value=29 Score=41.10 Aligned_cols=208 Identities=25% Similarity=0.261 Sum_probs=116.2
Q ss_pred hhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhh
Q 041227 987 HELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEE 1066 (1468)
Q Consensus 987 s~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee 1066 (1468)
-.|-..|-.|+++...||++|+.. ...|.-|+-++. .|-+|=|-+ +-.-++
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~--------------~e~v~qLrHeL~--------~kdeLL~~y-------s~~~ee 136 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAA--------------LEQVEQLRHELS--------MKDELLQIY-------SNDDEE 136 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH--------HHHHHHHhc-------CcHhhh
Confidence 457788999999999999998433 233334444433 222222222 222233
Q ss_pred hhHHhhcCchh-----------hhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHH
Q 041227 1067 CEYLKVANPKL-----------QATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEE 1135 (1468)
Q Consensus 1067 ~e~Lr~~N~kL-----------QaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~ 1135 (1468)
++.--..++.| ....+.|=+=|++|+--|.-||..--.|-......|.+ -+.-..||++-.-.-=.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---EqqLv~dcv~QL~~An~ 213 (306)
T PF04849_consen 137 SEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---EQQLVLDCVKQLSEANQ 213 (306)
T ss_pred cccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---HHHHHHHHHHHhhhcch
Confidence 33332222222 23445666666666666666666655555555455544 23347788777666666
Q ss_pred HHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHH
Q 041227 1136 KYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEA 1215 (1468)
Q Consensus 1136 kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~a 1215 (1468)
++. .|..||..=..++..|.+-|+ .|+.++-- .--.+..+=-|-+.|..++.++.+-+..+++
T Consensus 214 qia-----------~LseELa~k~Ee~~rQQEEIt---~Llsqivd-lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~a-- 276 (306)
T PF04849_consen 214 QIA-----------SLSEELARKTEENRRQQEEIT---SLLSQIVD-LQQRCKQLAAENEELQQHLQASKESQRQLQA-- 276 (306)
T ss_pred hHH-----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--
Confidence 666 445555555566666666443 34554421 1111222333455666777777776666654
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHhHhhhhhc
Q 041227 1216 VLEVSHLRADKAVLEAALQEVQGKLKLSES 1245 (1468)
Q Consensus 1216 v~EvS~LrAdkA~lE~~l~ev~~k~~~~es 1245 (1468)
|+..|+.--|...+-|++.|+.++-+.+
T Consensus 277 --EL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 277 --ELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4777777777777888888877776654
No 117
>PF14992 TMCO5: TMCO5 family
Probab=87.30 E-value=8.2 Score=44.99 Aligned_cols=178 Identities=18% Similarity=0.219 Sum_probs=117.0
Q ss_pred cccccccccccchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhH---HHHHHhhhHHHHHHHhHHHHHHHHHhhccc
Q 041227 863 VDSQHMEFKSDVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQ---NELENQISDLQKEKSQLEESIEIMLREGTV 939 (1468)
Q Consensus 863 ~~~~~~e~e~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k---~ElE~~is~lq~Ek~qLee~~e~~~~e~~i 939 (1468)
+.++||.++-+-+.++..+..---.|+.-+..+.+-+.||--..|.- -+....+.+-|.-...||......-+++.+
T Consensus 2 ~~sLn~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~ 81 (280)
T PF14992_consen 2 LMSLNMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEH 81 (280)
T ss_pred cchhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHh
Confidence 45789999999999998888777777777777777777776654422 223333344444444555444444455555
Q ss_pred hhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchh
Q 041227 940 ASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRL 1019 (1468)
Q Consensus 940 ~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l 1019 (1468)
.++-..++++.+-.-. .| +.--+-.+.-.+...+..-.++.+....+|.|+..+.++..+.+.
T Consensus 82 l~~~~~elq~k~~e~~--------~~---------~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~ 144 (280)
T PF14992_consen 82 LSKSVQELQRKQDEQE--------TN---------VQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQ 144 (280)
T ss_pred hhhhhhhhhhhhcccc--------CC---------CCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5565666666433111 11 100111122455556666678888888999999999999999988
Q ss_pred hhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 041227 1020 ELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKR 1059 (1468)
Q Consensus 1020 ~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~ 1059 (1468)
--.|..+.|..||..++|++.++|.--.+. ++.-.|.+
T Consensus 145 l~eDq~~~i~klkE~L~rmE~ekE~~lLe~--el~k~q~~ 182 (280)
T PF14992_consen 145 LCEDQANEIKKLKEKLRRMEEEKEMLLLEK--ELSKYQMQ 182 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhch
Confidence 889999999999999999999776655443 34444444
No 118
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.22 E-value=17 Score=40.21 Aligned_cols=127 Identities=25% Similarity=0.254 Sum_probs=83.1
Q ss_pred hhhhHHHHHHHHHH---HHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhc--Cc-hhhhhhhhHHHHhhhHHHhHHHHHH
Q 041227 1027 HAMSLQDEIRRLEA---EMEAQKVETKQKLQDMQKRWLGVQEECEYLKVA--NP-KLQATAEGLIEECSLLQKSNAELRK 1100 (1468)
Q Consensus 1027 ~~~~Lqdei~r~~~---e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~--N~-kLQaT~e~lieec~slQ~~~~eLr~ 1100 (1468)
.|..|+++|..|.. .++..+-++.+.-..+-.-+..|+.+++-|++. +. +-.+...++-.-...+++...+|+.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~ 107 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777765544 344444555555555555555566666655332 11 2223333333344566778888888
Q ss_pred HHhhhhhhhHHHHHHhhhhhhhhhhhhhhH--------HHHHHHHHhHHHHhhhhhhHhhH
Q 041227 1101 QKVNLHEHCAVLEAQLGESEKGFSSLSMKV--------EALEEKYLSMLEEISSKEKALNL 1153 (1468)
Q Consensus 1101 qklelh~~~t~lE~kL~eS~~~f~~~~k~V--------e~LE~kl~s~le~issKEk~l~~ 1153 (1468)
..-.|..+|..++++-++-..+|......| -.||.|+..|.+....|+..|..
T Consensus 108 e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999998877664 35888888888887777766653
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.16 E-value=26 Score=45.69 Aligned_cols=97 Identities=15% Similarity=0.313 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhccccccCCCCCCCCCCCCccccchhHHHHHhHhHhhhHHHHHHHH
Q 041227 585 VKEVDVLKQKVLELEKDCNELTEENLALLFKLKESGKDLLTGGASSHECPDNKSVFESESEVVQLKSQICKLEEELQERN 664 (1468)
Q Consensus 585 ~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~~~~~~~~~s~~~~~~~~~~~~~es~~~~l~~q~~~leee~~~~~ 664 (1468)
|-||..|++.|+|+..-...|+-|--.|=-+||-+...... ++ .+...|+-...+++
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~-----------------~~------~~~s~L~aa~~~ke 541 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKE-----------------TT------QRKSELEAARRKKE 541 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccC-----------------cc------hHHHHHHHHHHHHH
Confidence 56899999999999999999999999998899886532222 01 11222333344444
Q ss_pred HHHHhhh----hcccccchHHHHHHhhhhhhcchhhHhHhhHHH
Q 041227 665 ALIERLS----TYENRSDDLENQLQAFKDKVCYLDGELCKSRFR 704 (1468)
Q Consensus 665 ~~~~~~~----~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~ 704 (1468)
.++..++ .+.....---..+++|..+..+|.+.++..+-.
T Consensus 542 ~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~la 585 (1118)
T KOG1029|consen 542 LIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLA 585 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333333 222222222345667777777777776665544
No 120
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=87.06 E-value=27 Score=37.65 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=72.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccccccChhHHHHH
Q 041227 304 WEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKFQARDTDKKINE 383 (1468)
Q Consensus 304 LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~e~eD~~~lleE 383 (1468)
+++..-....++..||.++.. --..+++.++.+...|+.|++.|+..+++ +...+-.+
T Consensus 49 ~e~~~~~~~a~~~eLr~el~~------~~k~~~~~lr~~~e~L~~eie~l~~~L~~----------------ei~~l~a~ 106 (177)
T PF07798_consen 49 LENQEYLFKAAIAELRSELQN------SRKSEFAELRSENEKLQREIEKLRQELRE----------------EINKLRAE 106 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH
Confidence 556666677778888888775 33457889999999999999999988865 34455566
Q ss_pred HHHHHhhhhhhch-hHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 041227 384 LEDEIKFQKESNA-NLAIQLNKTQESNIELISILQELEETLAKQKMEIE 431 (1468)
Q Consensus 384 LrdEL~yEKE~Na-NL~LQLqKTQESN~ELVlaVQDLEEmLEqk~~EIs 431 (1468)
++-+++-+|.-+. ..+-+=.|+++=|..+---+.+|--.||.-+.++-
T Consensus 107 ~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 107 VKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTL 155 (177)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777775333 33344456777777666666666666666666554
No 121
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=86.87 E-value=60 Score=36.65 Aligned_cols=199 Identities=19% Similarity=0.292 Sum_probs=111.2
Q ss_pred HHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhh----hhhhhHH
Q 041227 995 QLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGV----QEECEYL 1070 (1468)
Q Consensus 995 qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~----Qee~e~L 1070 (1468)
.+.+++.|++.+|.+-+.-|.. .-...+..+++.|.+++...++.......-...+|...... |+.-+-.
T Consensus 9 ~i~e~~~~f~~~le~e~~~Rr~------~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~ 82 (247)
T PF06705_consen 9 SINERFSGFESDLENEKRQRRE------QEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQ 82 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999988877766632 22455677788888887766665544443334444333211 1111111
Q ss_pred -hhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhh-hhhhhHHHHHHhhhhh-----------hhhhhhhhhHHHHHHHH
Q 041227 1071 -KVANPKLQATAEGLIEECSLLQKSNAELRKQKVN-LHEHCAVLEAQLGESE-----------KGFSSLSMKVEALEEKY 1137 (1468)
Q Consensus 1071 -r~~N~kLQaT~e~lieec~slQ~~~~eLr~qkle-lh~~~t~lE~kL~eS~-----------~~f~~~~k~Ve~LE~kl 1137 (1468)
-..-..++.+.+.|.+.|..|+...++-|.+-.. +..-++.|..+|.+-+ .+=..++++++.....+
T Consensus 83 ~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l 162 (247)
T PF06705_consen 83 ISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRL 162 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111245778888999999998888777655433 3333344444444333 33345566666666666
Q ss_pred HhHHHH-hh---hhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchh
Q 041227 1138 LSMLEE-IS---SKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHS 1213 (1468)
Q Consensus 1138 ~s~le~-is---sKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s 1213 (1468)
...++. .. ++.+.|..+++.+..--...+++|.. .+--|+.+|-.-|..+-.+|+...=
T Consensus 163 ~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~-----------------~v~~Ei~~lk~~l~~e~~~R~~~Dd 225 (247)
T PF06705_consen 163 QEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQN-----------------FVLEEIAALKNALALESQEREQSDD 225 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555432 12 34455666666666555555555511 1234666666666666666666554
Q ss_pred HHH
Q 041227 1214 EAV 1216 (1468)
Q Consensus 1214 ~av 1216 (1468)
+.|
T Consensus 226 ~Iv 228 (247)
T PF06705_consen 226 DIV 228 (247)
T ss_pred HHH
Confidence 444
No 122
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=86.35 E-value=1.3 Score=43.14 Aligned_cols=74 Identities=14% Similarity=0.253 Sum_probs=48.3
Q ss_pred ccCccccccccchhcccccCcchhhhhhhheeeEE-eccCCCccccceeeechhhhccccCccceeeccCCCCCCCeEEE
Q 041227 39 RNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TMGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTSLQL 117 (1468)
Q Consensus 39 RnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-SmGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGTVLHV 117 (1468)
++-+..|...+.=.+ .++. .....|.| .-+..+..+||.+.|+|++......-..-.+||.++..|+| |+
T Consensus 34 ~t~nP~Wne~f~f~v---~~~~-----~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~~~~G~i-~~ 104 (111)
T cd04052 34 KTNNPSWNASTEFLV---TDRR-----KSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRI-RI 104 (111)
T ss_pred cCCCCccCCceEEEe---cCcC-----CCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeEECCCCCCCEE-EE
Confidence 444666766553222 2331 33445555 44444789999999999999765444567889998766665 99
Q ss_pred Eeee
Q 041227 118 KIQC 121 (1468)
Q Consensus 118 tIQ~ 121 (1468)
++|.
T Consensus 105 ~~~~ 108 (111)
T cd04052 105 SALW 108 (111)
T ss_pred EEEE
Confidence 8774
No 123
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.19 E-value=15 Score=43.08 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=50.2
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhh-hHHHHHHHhhc
Q 041227 1330 RTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKK-VALQEKVLRLE 1408 (1468)
Q Consensus 1330 k~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk-~sleeKl~rle 1408 (1468)
++..+..++..++..+.+-+-+...|+.-++-+.+..+++.++|..+...|..+++...+-..|-++. ..|..++..||
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44455555555555555555566677777777777888888888888888888887766444433332 23444444443
No 124
>PF13514 AAA_27: AAA domain
Probab=86.08 E-value=1.5e+02 Score=40.42 Aligned_cols=424 Identities=21% Similarity=0.237 Sum_probs=194.7
Q ss_pred hhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhcc-chhhhccchh-----------------------
Q 041227 971 KSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERES-SRLELENSAT----------------------- 1026 (1468)
Q Consensus 971 k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es-~~l~l~nS~s----------------------- 1026 (1468)
.+..+...-.+++..+..+.+.-..+...+..++++++.|..--.- |.=++...+.
T Consensus 453 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~~~~~~~~~~~fe~a~ 532 (1111)
T PF13514_consen 453 TVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQLAALDAALAEAFEAAV 532 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCccccHHHHHHHH
Confidence 3455555566666777777777778888888888888877653211 1111111111
Q ss_pred -hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHH------H
Q 041227 1027 -HAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAEL------R 1099 (1468)
Q Consensus 1027 -~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eL------r 1099 (1468)
.+-.+-| .++-+++--+....+.+.+..++.++..++.....+...-..|.+.-..+..-|- +=-.-++| |
T Consensus 533 ~~aD~laD-~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g-~p~~p~~~~~Wl~~~ 610 (1111)
T PF13514_consen 533 READELAD-RRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAG-LPLSPAEMRDWLARR 610 (1111)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHH
Confidence 1111222 2233444455556666666677777777666666665554444444433333332 21111222 1
Q ss_pred HHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhh---------hhhHhhHHHHHHHHHhhhhcchhh
Q 041227 1100 KQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISS---------KEKALNLELDALLHENRKHKDKSV 1170 (1468)
Q Consensus 1100 ~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~iss---------KEk~l~~ELe~l~qE~~~~~ek~~ 1170 (1468)
..-++.++.+...++.+... ...+..+...|...+..... +-..+..+++......+...+++.
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~ 683 (1111)
T PF13514_consen 611 EAALEAAEELRAARAELEAL-------RARRAAARAALAAALAALGPAEELAALLEEAEALLEEWEQAAARREQLEEELQ 683 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333333333332 22223333333322222211 111223333333333333333333
Q ss_pred hHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccc---cc-------hhHHHHHHhhhhhhhHHHHHHHHHHHhHh
Q 041227 1171 TEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKD---GT-------HSEAVLEVSHLRADKAVLEAALQEVQGKL 1240 (1468)
Q Consensus 1171 ~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere---~~-------~s~av~EvS~LrAdkA~lE~~l~ev~~k~ 1240 (1468)
..+ +-+.+.......+++++.....+..+...+-. .+ ..+.+.++-...+....++..++..+..+
T Consensus 684 ~~~----~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~ 759 (1111)
T PF13514_consen 684 QLE----QELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADL 759 (1111)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 22223334455666666666666554443331 11 22333444445566666666666666666
Q ss_pred hhhhcchhhhhhhH---------HHHHHHHHHHHHHHhhhHHHH---HhhHHHHHHHHhhhCcchHhhhhhhhhhccccc
Q 041227 1241 KLSESNLGTLRMES---------QTKIQQLKSELAAARQNQEVL---MADHEKLLNLLEDVKPNEEKFRGTIRGLELKLK 1308 (1468)
Q Consensus 1241 ~~~es~l~~l~~Es---------~~ki~~l~~~L~askqn~emL---~~d~ek~~~lle~~kSneeklk~t~~~LElklk 1308 (1468)
..++.++..|-... ...+..|..-|...++.+... ..+.++...-++.+...-..+...+..|=-...
T Consensus 760 ~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~ 839 (1111)
T PF13514_consen 760 AAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAG 839 (1111)
T ss_pred HHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66666665554321 245666666666666554332 222222222222222222222222322222222
Q ss_pred cchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhh-hhchHHHHHHHhhHHHhhhhHHHHH
Q 041227 1309 ASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQIL-SGDYEELKAERISFMQKISTSQQVV 1387 (1468)
Q Consensus 1309 ~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~-S~e~eeLkaek~~~~~kis~~q~~~ 1387 (1468)
+.+. ++...+..+..+...+..++..+...|....... .++....-+ ..+...|.++...+...+..++..
T Consensus 840 ~~~~------e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~- 911 (1111)
T PF13514_consen 840 VEDE------EELREAEERAEERRELREELEDLERQLERQADGL-DLEELEEELEELDPDELEAELEELEEELEELEEE- 911 (1111)
T ss_pred CCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH-
Confidence 2221 1222333344444445555555555553322211 122222222 224455666666666655555443
Q ss_pred hhhhhhhhhhhHHHHHHHhhcCchhHHHhh
Q 041227 1388 SELDDCKRKKVALQEKVLRLEGDLAAIEAL 1417 (1468)
Q Consensus 1388 seled~k~sk~sleeKl~rle~dl~a~ea~ 1417 (1468)
++++......++.++-.|+++-.+.++.
T Consensus 912 --~~~l~~~~~~~~~~l~~l~~~~~~a~l~ 939 (1111)
T PF13514_consen 912 --LEELQEERAELEQELEALEGDDDAAELE 939 (1111)
T ss_pred --HHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 3444556667788888888876665544
No 125
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.97 E-value=1.1e+02 Score=39.02 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH--hhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhh
Q 041227 1327 QLERTAQFQDEVLSLKKLLNEA--KFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDD 1392 (1468)
Q Consensus 1327 Qlqk~~~lqdEv~~lk~sL~~~--kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled 1392 (1468)
.+.++..+++|+..+...|..+ .-...+|..-+.-+..++..++++...+..++..+.+.+..++.
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666553 33556666666666777777777777777776666665554443
No 126
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.82 E-value=43 Score=38.60 Aligned_cols=126 Identities=26% Similarity=0.361 Sum_probs=87.8
Q ss_pred hhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhh--ccchhhhhhHHHHHHHHHHHHHHhHHHH
Q 041227 972 SLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLEL--ENSATHAMSLQDEIRRLEAEMEAQKVET 1049 (1468)
Q Consensus 972 ~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l--~nS~s~~~~Lqdei~r~~~e~e~qk~~~ 1049 (1468)
+..++.....++.-++.++.+...+++||...|-.|-..|++|+-.-|.- +-.+..+..|.+++.++..+
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~-------- 118 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEE-------- 118 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 34455566677788999999999999999999999999999988766543 33344444444444433322
Q ss_pred HHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhh
Q 041227 1050 KQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGE 1118 (1468)
Q Consensus 1050 kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~e 1118 (1468)
+...++ + ......++.+|..++.+.-..+......++++-..+...+++|-.+|..
T Consensus 119 ---~~~l~~-------~---i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 119 ---IEKLEK-------E---IEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred ---HHHHHH-------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 122222 2 2223346777778888888888888888998888888888888888764
No 127
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.80 E-value=1.2e+02 Score=39.17 Aligned_cols=278 Identities=21% Similarity=0.290 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccc
Q 041227 293 KIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKF 372 (1468)
Q Consensus 293 tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~ 372 (1468)
-.+.|++|...|+.....+-.++.+|+++--.-..+-+.|.+.|+.|+. .... .. ...
T Consensus 16 ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~--------------q~~~----~~-~~~--- 73 (617)
T PF15070_consen 16 YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN--------------QMAE----PP-PPE--- 73 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhcc----cC-Ccc---
Confidence 4678999999999888888888888888888777777777777654332 2211 00 000
Q ss_pred cccChhHHHHHHHHHHhhhhhhchhHHHhHhhhhhhhHHHHHH-------HHHHHHHHHHHHhhhhhhhccchhhhhhhh
Q 041227 373 QARDTDKKINELEDEIKFQKESNANLAIQLNKTQESNIELISI-------LQELEETLAKQKMEIEDLSKMKSEFEEVVG 445 (1468)
Q Consensus 373 e~eD~~~lleELrdEL~yEKE~NaNL~LQLqKTQESN~ELVla-------VQDLEEmLEqk~~EIs~LS~~~~e~dd~~~ 445 (1468)
....|...-.-|.+|+...+.--.+|.-||+---+-|..|-.. +.+||..++...-...|...+.. ...+
T Consensus 74 ~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe---~lqs 150 (617)
T PF15070_consen 74 PPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLE---QLQS 150 (617)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcc
Confidence 0112222222344444433333355665555433333333322 34555555555444443322211 1112
Q ss_pred chhhhhHHHHHH--HHhhcccCCCCCCCCccccccccchhhh-hhcccchhHHHHHH-HHHHHHhhhHHHHHHHHHHHhh
Q 041227 446 DSKQINTAKQIL--VKKRRDTSCDSDQEGSIVEHPIRDLNAK-IEQQDDRNLELELQ-KLQEAKKNLESTVQFLEKSLVE 521 (1468)
Q Consensus 446 d~~q~~~~~~~l--VK~~~da~c~~~~e~s~lE~kI~dL~~e-IEl~D~~~LEmqmE-QL~e~~knl~~~iq~Le~~l~e 521 (1468)
|-.-+|-|+..- .|+ -+..++++.+.|.++ +++.+.-..+.++- .|+..=-.|+.+++.+.+.++.
T Consensus 151 dk~t~SRAlsQN~eLK~----------QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~ 220 (617)
T PF15070_consen 151 DKATASRALSQNRELKE----------QLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLEL 220 (617)
T ss_pred cchHHHHHHHhHHHHHH----------HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222233333320 010 111233333333332 33433333444443 3444444566777788888888
Q ss_pred hhhhhhhhhhhhh---hhhhhHHHHHHhHHhHHHHhHHHH--HHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHH
Q 041227 522 KSHEIEMERHLKT---QTLMHYEAEWRSRIAEKEENIVNL--EAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVL 596 (1468)
Q Consensus 522 k~hei~~~~~~~~---q~l~~~e~e~~~kls~kE~eI~~L--~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvq 596 (1468)
|++++..-..-+. .-|.+|.+.|-.--+++|.=-..+ ...|-+-+......+. --++-..+.+|
T Consensus 221 K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~-----------~~~E~~~~ELq 289 (617)
T PF15070_consen 221 KSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGK-----------VQLEMAHQELQ 289 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHH
Confidence 8887775332223 366778888877666666533322 2222222221111100 02333445566
Q ss_pred HHHHhhhhhhHHhHHHHHHh
Q 041227 597 ELEKDCNELTEENLALLFKL 616 (1468)
Q Consensus 597 eLE~dc~ELtdEnl~l~~kl 616 (1468)
+......-++-+|=.|--.|
T Consensus 290 ~~qe~Lea~~qqNqqL~~ql 309 (617)
T PF15070_consen 290 EAQEHLEALSQQNQQLQAQL 309 (617)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 66666667777776654444
No 128
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=84.99 E-value=36 Score=39.75 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHh
Q 041227 1222 LRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLE 1287 (1468)
Q Consensus 1222 LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle 1287 (1468)
+.+-.+.+.+.+...+.++..+++++..++ ..+..+...+...+++...+..+......|++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~----~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~ 189 (423)
T TIGR01843 128 IKGQQSLFESRKSTLRAQLELILAQIKQLE----AELAGLQAQLQALRQQLEVISEELEARRKLKE 189 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444444443 33444555555555555555555555555554
No 129
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=84.88 E-value=96 Score=37.20 Aligned_cols=267 Identities=23% Similarity=0.255 Sum_probs=138.4
Q ss_pred hHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccccccChhHHHHHHHHHHhhhhhhchhHHHhHhhhhhhhH
Q 041227 331 SLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKFQARDTDKKINELEDEIKFQKESNANLAIQLNKTQESNI 410 (1468)
Q Consensus 331 dLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~e~eD~~~lleELrdEL~yEKE~NaNL~LQLqKTQESN~ 410 (1468)
=|.+|+...+.|||.+|-=.|+|+...............-...+||+. +.+.+ -|.||..=|..|.+.|-
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~---------~~~~~-~~~~La~lL~~sre~Nk 82 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPS---------IPPEK-ENKNLAQLLSESREQNK 82 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCcc---------CCccc-chhhHHHHHHHHHHHHH
Confidence 467899999999999999999998433221111100000011122221 11111 56777777888888887
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhchhhhhHHHHHHHHhhcccCCCCCCCCccccccccchhhhhhccc
Q 041227 411 ELISILQELEETLAKQKMEIEDLSKMKSEFEEVVGDSKQINTAKQILVKKRRDTSCDSDQEGSIVEHPIRDLNAKIEQQD 490 (1468)
Q Consensus 411 ELVlaVQDLEEmLEqk~~EIs~LS~~~~e~dd~~~d~~q~~~~~~~lVK~~~da~c~~~~e~s~lE~kI~dL~~eIEl~D 490 (1468)
=|..-|.+|=..|..-.-+|--|. .....++- |+.+... .-++.+
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR---------------------~~la~~r~--~~~~~~~------------~~~~~e 127 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLR---------------------EKLARQRV--GDEGIGA------------RHFPHE 127 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHH---------------------HHHHhhhh--hhccccc------------cccchH
Confidence 555555544444433333333221 11111110 0001000 011266
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHhHHhHHHHhHHHHHHHHHHHHHHhh
Q 041227 491 DRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAEWRSRIAEKEENIVNLEAKLSEVLCAQA 570 (1468)
Q Consensus 491 ~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e~~~kls~kE~eI~~L~~KL~~~~~~~~ 570 (1468)
+.+|-.|+|.++.....|+.-++- .+++|. |+..+| -.|++|..- |-..|+.+++...
T Consensus 128 re~lV~qLEk~~~q~~qLe~d~qs---~lDEke-El~~ER-----------D~yk~K~~R-------LN~ELn~~L~g~~ 185 (319)
T PF09789_consen 128 REDLVEQLEKLREQIEQLERDLQS---LLDEKE-ELVTER-----------DAYKCKAHR-------LNHELNYILNGDE 185 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHH-----------HHHHHHHHH-------HHHHHHHHhCCCC
Confidence 778888888888776666655544 233332 443333 236666443 3445566664322
Q ss_pred hcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhh---hccccccCCC---CCCCCCCCCcccc---
Q 041227 571 LKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLALLFKLKE---SGKDLLTGGA---SSHECPDNKSVFE--- 641 (1468)
Q Consensus 571 ~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkE---s~~~~~~~~~---s~~~~~~~~~~~~--- 641 (1468)
.. .. .+ -.|+-||-.|+.+|..++.+.+ |+--|+.--+.+=+ +++....|.+ .+...++...+..
T Consensus 186 ~r---iv-DI-DaLi~ENRyL~erl~q~qeE~~-l~k~~i~KYK~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~ 259 (319)
T PF09789_consen 186 NR---IV-DI-DALIMENRYLKERLKQLQEEKE-LLKQTINKYKSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLE 259 (319)
T ss_pred CC---cc-cH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccccccCCCCCCcccccccHHHHHHHHh
Confidence 21 11 12 2588899999999999998876 66666665444434 2233332311 1223333322222
Q ss_pred ch----------hHHHHHhHhHhhhHHHHHHHHHHHHhh
Q 041227 642 SE----------SEVVQLKSQICKLEEELQERNALIERL 670 (1468)
Q Consensus 642 ~e----------s~~~~l~~q~~~leee~~~~~~~~~~~ 670 (1468)
++ ..+++|++=.+-|=|.+..+++.+.--
T Consensus 260 ~~~~~~~~~~~~~s~sdLksl~~aLle~indK~~al~Hq 298 (319)
T PF09789_consen 260 SESNGCSLPASPQSISDLKSLATALLETINDKNLALQHQ 298 (319)
T ss_pred cccccCCCCCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 11 257777887777777777777654433
No 130
>PLN02939 transferase, transferring glycosyl groups
Probab=84.88 E-value=63 Score=43.56 Aligned_cols=72 Identities=29% Similarity=0.369 Sum_probs=54.8
Q ss_pred HHHHHhhhhhhhHHHHHHhhhhhhh--hhhhhh-hHHHHHHHHHhHHHHhhhhhhH-------hhHHHHHHHHHhhhhcc
Q 041227 1098 LRKQKVNLHEHCAVLEAQLGESEKG--FSSLSM-KVEALEEKYLSMLEEISSKEKA-------LNLELDALLHENRKHKD 1167 (1468)
Q Consensus 1098 Lr~qklelh~~~t~lE~kL~eS~~~--f~~~~k-~Ve~LE~kl~s~le~issKEk~-------l~~ELe~l~qE~~~~~e 1167 (1468)
....|.+|++.+..||.+|.++..+ ++---+ .|+.||+.+--+-.+++.-.-+ |..||+.|=.||+-.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (977)
T PLN02939 161 ILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKD 240 (977)
T ss_pred HHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHH
Confidence 3456899999999999999996433 322222 3888999988888888876665 88999999888887776
Q ss_pred hh
Q 041227 1168 KS 1169 (1468)
Q Consensus 1168 k~ 1169 (1468)
-+
T Consensus 241 ~~ 242 (977)
T PLN02939 241 DI 242 (977)
T ss_pred HH
Confidence 33
No 131
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.84 E-value=3.9 Score=44.43 Aligned_cols=99 Identities=25% Similarity=0.302 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhh
Q 041227 292 VKIEELHAEARM-------WEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQS 364 (1468)
Q Consensus 292 ~tIEeLK~E~~~-------LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q 364 (1468)
..+..|+.|+.. +..+.-.+..+++.+++.+.....+-..|..++..|+.++..|..++......
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~-------- 145 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKA-------- 145 (194)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 345555555544 34444445568888888888888887888888877777777777777766543
Q ss_pred hhhccccccccChhHHHHHHHHHHhhhhhhchhHHHhHhhhhhhhHHHHH
Q 041227 365 TATENLKFQARDTDKKINELEDEIKFQKESNANLAIQLNKTQESNIELIS 414 (1468)
Q Consensus 365 ~~~~~lk~e~eD~~~lleELrdEL~yEKE~NaNL~LQLqKTQESN~ELVl 414 (1468)
++-|.||+.=..--+.-+.-++.++++-|-+||-
T Consensus 146 ----------------~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 146 ----------------NEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566655555556677789999999999985
No 132
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.48 E-value=1.1e+02 Score=37.46 Aligned_cols=98 Identities=22% Similarity=0.314 Sum_probs=49.1
Q ss_pred HHHhhhhhHHHhhhHHHHHHHHHHhhhhhhccc-----ccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhh
Q 041227 1176 LNQMYMEKTVEAQNLQREVAHLTEQISATYDEK-----DGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTL 1250 (1468)
Q Consensus 1176 lnq~~~Ek~vevenLqrEv~~Lt~QiSat~der-----e~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l 1250 (1468)
+...|.+.--.|..|++++..|..++.+...-. .....+-++ ..|+...+.+++.+..++.++.....+++.+
T Consensus 266 l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 343 (498)
T TIGR03007 266 LRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVY--QQLQIELAEAEAEIASLEARVAELTARIERL 343 (498)
T ss_pred HHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888888875433211 011112221 3344444455555544444444444444444
Q ss_pred hhhH------HHHHHHHHHHHHHHhhhHHHH
Q 041227 1251 RMES------QTKIQQLKSELAAARQNQEVL 1275 (1468)
Q Consensus 1251 ~~Es------~~ki~~l~~~L~askqn~emL 1275 (1468)
+.+. +..+..|..+....+.+-++|
T Consensus 344 ~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l 374 (498)
T TIGR03007 344 ESLLRTIPEVEAELTQLNRDYEVNKSNYEQL 374 (498)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 334444444444444444443
No 133
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=84.28 E-value=2.3 Score=42.16 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=54.9
Q ss_pred cCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-ec-cCCCccccceeeechhhhcc-ccCccce
Q 041227 26 TGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-GSSRSGIVGEALVNLASYMN-SKTSVPL 102 (1468)
Q Consensus 26 tGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYae-AtkP~sV 102 (1468)
.|+...||. ..-.+-+..|...++=.+ .+..++........|.| .- ..++..++|.|.|.+++... ...+...
T Consensus 28 l~~~~~kT~-v~~~t~nP~Wne~f~F~v---~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~ 103 (126)
T cd08682 28 LGKEKYSTS-VKEKTTSPVWKEECSFEL---PGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTR 103 (126)
T ss_pred ECCeeeeee-eecCCCCCEeCceEEEEe---cCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccE
Confidence 466666543 333445677777543222 12111223445566666 33 33468899999999999863 3456788
Q ss_pred eeccCCCC-----CCCeEEEEee
Q 041227 103 TLPLKKCN-----SGTSLQLKIQ 120 (1468)
Q Consensus 103 SLPLK~cn-----sGTVLHVtIQ 120 (1468)
-+||...+ ...-|||+||
T Consensus 104 W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 104 WFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEECcCCCCCCccccceEEEEeC
Confidence 89996432 3466889887
No 134
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=83.80 E-value=86 Score=37.72 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=48.0
Q ss_pred HHHhhhhhhhHHHHHHhhhhhh---------hhhhhhhhHHHHHHHHHhH----HHHhhhhhhHhhHHHHHHH
Q 041227 1100 KQKVNLHEHCAVLEAQLGESEK---------GFSSLSMKVEALEEKYLSM----LEEISSKEKALNLELDALL 1159 (1468)
Q Consensus 1100 ~qklelh~~~t~lE~kL~eS~~---------~f~~~~k~Ve~LE~kl~s~----le~issKEk~l~~ELe~l~ 1159 (1468)
.+-.+|..|.+.||+-||-+.- .....+-+|..|+.+++.+ |.-|..+=+.|+.+++.|-
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~ 281 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELA 281 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999433 3556778899999999876 4667777788899998865
No 135
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=83.63 E-value=54 Score=43.00 Aligned_cols=196 Identities=26% Similarity=0.335 Sum_probs=144.8
Q ss_pred hHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHH
Q 041227 1149 KALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAV 1228 (1468)
Q Consensus 1149 k~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~ 1228 (1468)
|.|+-||.+|+-+. ++ .||++|=.||+..--.+-++..-.. |..+..+=+--||-+.|-
T Consensus 340 KYLLgELkaLVaeq---~D-----------------sE~qRLitEvE~cislLPav~g~tn-iq~EIALA~QplrsENaq 398 (861)
T PF15254_consen 340 KYLLGELKALVAEQ---ED-----------------SEVQRLITEVEACISLLPAVSGSTN-IQVEIALAMQPLRSENAQ 398 (861)
T ss_pred HHHHHHHHHHHhcc---ch-----------------HHHHHHHHHHHHHHHhhhhhhcccc-chhhhHhhhhhhhhhhHH
Confidence 47888998887653 22 5788899999998888888876543 344555558889999999
Q ss_pred HHHHHHHHHhHhhhhhcch-----h--hhhhhH-HHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhh
Q 041227 1229 LEAALQEVQGKLKLSESNL-----G--TLRMES-QTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTI 1300 (1468)
Q Consensus 1229 lE~~l~ev~~k~~~~es~l-----~--~l~~Es-~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~ 1300 (1468)
|--.|--++.+||.-|.-- . ++...+ ..-=.-|-..|.-+..++|.|..-++.|++.+++-|-.--+|++.+
T Consensus 399 LrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 399 LRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMF 478 (861)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888887644311 0 111111 0112334566677788889999999999999999998888888888
Q ss_pred hhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHH
Q 041227 1301 RGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKA 1371 (1468)
Q Consensus 1301 ~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLka 1371 (1468)
-+=+-.|+ --|||..-|+..+|+-|...- -.|-.+|-.|.++..|+.-|.-.|+---+|..-|+.
T Consensus 479 ~ekd~~l~---~~kq~~d~e~~rik~ev~eal---~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 479 QEKDQELL---ENKQQFDIETTRIKIEVEEAL---VNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHH---hhHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 77666665 348899999999999886543 256678899999999999999999887777666653
No 136
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.50 E-value=16 Score=42.75 Aligned_cols=115 Identities=21% Similarity=0.293 Sum_probs=65.9
Q ss_pred HHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhh
Q 041227 999 RICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQ 1078 (1468)
Q Consensus 999 risgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQ 1078 (1468)
-|..||+||.-|+-||---.++|+..+.-..--+.++. .. |-.+--++|----.-|.|+.|-+++.||.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e-------~e----k~e~s~LkREnq~l~e~c~~lek~rqKls 87 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVE-------EE----KNEYSALKRENQSLMESCENLEKTRQKLS 87 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HH----hhhhhhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 47889999999999999999998865433222221111 11 11222333333334466777777777765
Q ss_pred hhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhh
Q 041227 1079 ATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFS 1124 (1468)
Q Consensus 1079 aT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~ 1124 (1468)
.-+-.=---.+.|..++.-.|+|.--|......+..+|.-|+....
T Consensus 88 hdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 88 HDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4443222223445555555566666666666666666666665544
No 137
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.94 E-value=2.4e+02 Score=40.19 Aligned_cols=302 Identities=18% Similarity=0.224 Sum_probs=145.9
Q ss_pred HHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccc--cchhhhhhhhhhhhhcchhhhhhhhhhh
Q 041227 912 LENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQ--VSVNRNLESKSLELESSKHEMEVHLHEL 989 (1468)
Q Consensus 912 lE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~--vs~n~~le~k~~eles~K~elE~hls~L 989 (1468)
=|..|..|+.|...+.|....+--. ..||-. +-. -++.-+-.| |...-..|--+..+-..-.+++-+|..+
T Consensus 784 re~~~~~l~~~~~~~~~~~~~~~~~---~~~~~r-~~~---~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~l~~~ 856 (1486)
T PRK04863 784 REKRIEQLRAEREELAERYATLSFD---VQKLQR-LHQ---AFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADH 856 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHH-HHH---HHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777766666554333222 122211 000 011112233 4445556666666667777788888888
Q ss_pred hhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhH
Q 041227 990 EEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEY 1069 (1468)
Q Consensus 990 e~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~ 1069 (1468)
+....|...++..+..+|.-|..=--...|=.++ .|.+.|. +...++..+++.-.|
T Consensus 857 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~------~~~~~~~------------------~~~~~~~~~~~a~~y 912 (1486)
T PRK04863 857 ESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADE------TLADRVE------------------EIREQLDEAEEAKRF 912 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCc------cHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 8888888777777776665554322222221111 1333343 233333333333344
Q ss_pred HhhcCchhh-------------hhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHH--
Q 041227 1070 LKVANPKLQ-------------ATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALE-- 1134 (1468)
Q Consensus 1070 Lr~~N~kLQ-------------aT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE-- 1134 (1468)
+...+..|. .+-+-+-.+-.-.+.....+++|...|.+-|. -.-.|. +...+..|.
T Consensus 913 ~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~-y~~~~~~l~~~ 983 (1486)
T PRK04863 913 VQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQ--------RRAHFS-YEDAAEMLAKN 983 (1486)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcc-HHHHHhHhhcc
Confidence 433333331 12223333344444444555555555433221 111222 444444332
Q ss_pred ----HHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhccccc
Q 041227 1135 ----EKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDG 1210 (1468)
Q Consensus 1135 ----~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~ 1210 (1468)
.++..-++.|...++.+-..+...=+...+.+.++.. +..-+-.+.-.++.++.++..|.=+..+--.+|-+
T Consensus 984 ~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~s----lksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~ 1059 (1486)
T PRK04863 984 SDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLAS----LKSSYDAKRQMLQELKQELQDLGVPADSGAEERAR 1059 (1486)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 2333334455555555555555544444444443322 22222245555666677777776665555555555
Q ss_pred chhHHHH-HHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHH
Q 041227 1211 THSEAVL-EVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTK 1257 (1468)
Q Consensus 1211 ~~s~av~-EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~k 1257 (1468)
+..+-+. .++.=|.-+.-||..+.-.+.++......|..+..++++.
T Consensus 1060 ~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~ 1107 (1486)
T PRK04863 1060 ARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEM 1107 (1486)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333 2344455566666666666666666666666666555443
No 138
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=82.69 E-value=5.5 Score=39.11 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=60.1
Q ss_pred ccccccCC----ccceeEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE--eccCC
Q 041227 5 IWELQVPK----GWDKLVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV--TMGSS 78 (1468)
Q Consensus 5 FhATQVP~----GwDkLfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV--SmGSS 78 (1468)
+.|..+|. |.---||.|.....++.++||. ..-.+-+..|..++.=.+.. + ......|.| .....
T Consensus 8 ~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~-~~~~t~~P~Wne~f~f~i~~---~-----~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 8 VRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTR-TIYDTLNPRWDEEFELEVPA---G-----EPLWISATVWDRSFVG 78 (126)
T ss_pred EEeECCCCCCCCCCCCceEEEEECCCCeeeeccc-EecCCCCCcccceEEEEcCC---C-----CCCEEEEEEEECCCCC
Confidence 45667772 2222466665333233444433 22234455666554333211 1 123344544 22334
Q ss_pred Cccccceeeechhhhccc--cCccceeeccCCCCCCCeEEEEeeeecCC
Q 041227 79 RSGIVGEALVNLASYMNS--KTSVPLTLPLKKCNSGTSLQLKIQCLTPR 125 (1468)
Q Consensus 79 RSgiLGEasINLAdYaeA--tkP~sVSLPLK~cnsGTVLHVtIQ~Lt~k 125 (1468)
+..++|+|.|+++++.-. -.+..+.+||.. .|.| |+.|..-+.+
T Consensus 79 ~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i-~l~~~~~~~~ 124 (126)
T cd04043 79 KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRL-LLRVSMEGER 124 (126)
T ss_pred CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeE-EEEEEEeeec
Confidence 788999999999986432 345678999976 4766 8877665543
No 139
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.63 E-value=23 Score=36.52 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=17.0
Q ss_pred hhHHHHHHHHhhhhchHHHHHHHhhHHHhh
Q 041227 1351 ENERLEASFQILSGDYEELKAERISFMQKI 1380 (1468)
Q Consensus 1351 ek~rLe~sl~~~S~e~eeLkaek~~~~~ki 1380 (1468)
++..|+.-+..+-.-|++|..++..|-+.|
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555556666666665555544
No 140
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.47 E-value=33 Score=38.66 Aligned_cols=98 Identities=20% Similarity=0.258 Sum_probs=55.3
Q ss_pred HhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHH
Q 041227 1237 QGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQ 1316 (1468)
Q Consensus 1237 ~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq 1316 (1468)
.+.+-+.+.||-+.|.|.-.|...++.==+..|.. ..-+.+--+.-..++.+++.=.+.+.+.+-|=|+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~-----------~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr 77 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLREL-----------RAELRNKESQIQELQDSLRTKQLELEVCENELQR 77 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHH
Confidence 45566777888888888888877776322222222 1122222222233334444334444455555556
Q ss_pred HHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 041227 1317 LTEEISSLKVQLERTAQFQDEVLSLKKLLNEA 1348 (1468)
Q Consensus 1317 ~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~ 1348 (1468)
..-|+.-|+- |+..+..|+..|+..+..+
T Consensus 78 ~~~Ea~lLre---kl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 78 KKNEAELLRE---KLGQLEAELAELREELACA 106 (202)
T ss_pred HhCHHHHhhh---hhhhhHHHHHHHHHHHHhh
Confidence 6666655554 4566777888888888776
No 141
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.12 E-value=2.5e+02 Score=39.93 Aligned_cols=410 Identities=20% Similarity=0.258 Sum_probs=203.7
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchh-h----hhh------HHHHHHHHHH----HHHHhHHHH
Q 041227 985 HLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSAT-H----AMS------LQDEIRRLEA----EMEAQKVET 1049 (1468)
Q Consensus 985 hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s-~----~~~------Lqdei~r~~~----e~e~qk~~~ 1049 (1468)
|.-++-.++.++..+|.-|+.|+..+++-.......|.|... + |.. +.+... +.+ -+.+-.|+
T Consensus 639 ~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g~~~~l~~~~~~~~Gvlvsel~~~v~~~~~~~-~~A~lg~~~~~iVv~- 716 (1486)
T PRK04863 639 RERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVSLEDAPY-FSALYGPARHAIVVP- 716 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccHHHHHHHHhcCCeehhHhhhccCcchHHH-HHHHHHhhhCeEEeC-
Confidence 666788888999999999999999999999888888888732 1 111 122211 111 01111110
Q ss_pred HHHHHHHHHhHhhhhhhhh---HHhhcCchhhhhhhhHHH-----------------------Hhh-----hHHHhHHHH
Q 041227 1050 KQKLQDMQKRWLGVQEECE---YLKVANPKLQATAEGLIE-----------------------ECS-----LLQKSNAEL 1098 (1468)
Q Consensus 1050 kqk~qe~q~~wse~Qee~e---~Lr~~N~kLQaT~e~lie-----------------------ec~-----slQ~~~~eL 1098 (1468)
++....... ..-++|- ||=..+| ++-.++... +-+ -=.+....|
T Consensus 717 --d~~~A~~ai-~~L~~~p~d~~li~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~r~s~~p~~p~~gr~are~~~~~l 791 (1486)
T PRK04863 717 --DLSDAAEQL-AGLEDCPEDLYLIEGDP--DSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQL 791 (1486)
T ss_pred --CHHHHHHHH-HhccCCccceeeecCCh--hHHhccCccHHHhcCCeeeeecchhhhhccCCCcccccHHHHHHHHHHH
Confidence 222222222 2223454 3332221 111111110 000 114566677
Q ss_pred HHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHH---------HHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchh
Q 041227 1099 RKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEAL---------EEKYLSMLEEISSKEKALNLELDALLHENRKHKDKS 1169 (1468)
Q Consensus 1099 r~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~L---------E~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~ 1169 (1468)
+.+.-++.+.+..+.-....-++-+..|..+|... |..|..+...+.--+..| .+++.=-+-++.+=+..
T Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~ 870 (1486)
T PRK04863 792 RAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERAL-ADHESQEQQQRSQLEQA 870 (1486)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 77777777777777666666666666676654433 444444444444333333 23444444555555555
Q ss_pred hhHHHHHHHhhhhhHHHhhh-HHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchh
Q 041227 1170 VTEESLLNQMYMEKTVEAQN-LQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLG 1248 (1468)
Q Consensus 1170 ~~~~~llnq~~~Ek~veven-LqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~ 1248 (1468)
...-.+||++.-.-.+-..+ |..+|+-+.+|++...+-. .-+-..-+..+.||..++.++.- +.+.+
T Consensus 871 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~--------~y~~~~~~~L~qLE~~l~~L~~D----p~~~e 938 (1486)
T PRK04863 871 KEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAK--------RFVQQHGNALAQLEPIVSVLQSD----PEQFE 938 (1486)
T ss_pred HHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhCCC----HHHHH
Confidence 66667899988877776666 9999999999998765433 22333444444555444444332 12223
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHH-HHHHHHhhhhHHH
Q 041227 1249 TLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYER-LQLTEEISSLKVQ 1327 (1468)
Q Consensus 1249 ~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yEr-qq~~eE~s~LkvQ 1327 (1468)
.++.+++.- ++.+.-+..-.--|..|+. +-.-| . |+- +.+..+.+.|-.+
T Consensus 939 ~lr~e~~~~-----------~~~~~~~~~~~~~l~~~~~----~~~~~-----------~---y~~~~~~l~~~~~~~~~ 989 (1486)
T PRK04863 939 QLKQDYQQA-----------QQTQRDAKQQAFALTEVVQ----RRAHF-----------S---YEDAAEMLAKNSDLNEK 989 (1486)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH----HHHhc-----------c---HHHHHhHhhcchhhhHH
Confidence 333333221 2211111111111222211 11111 1 332 3455666666555
Q ss_pred HHH-HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHh
Q 041227 1328 LER-TAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLR 1406 (1468)
Q Consensus 1328 lqk-~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~r 1406 (1468)
|++ +..++.+--.++..+++++-+.......+..+-..+. ...+++...+..+.++.
T Consensus 990 Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq-------~~~e~L~E~eqe~~~~g--------------- 1047 (1486)
T PRK04863 990 LRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYD-------AKRQMLQELKQELQDLG--------------- 1047 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcC---------------
Confidence 432 2333333333344444443333333333322222222 12222222222222221
Q ss_pred hcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041227 1407 LEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEELKQ 1465 (1468)
Q Consensus 1407 le~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~elk~ 1465 (1468)
.-.|-.|-+..-...-+|-..|+.-|-.-+++++++...+.|.+.+.+++..++.+++.
T Consensus 1048 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~ 1106 (1486)
T PRK04863 1048 VPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHE 1106 (1486)
T ss_pred CCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222222346667777777777788888888888888888888888877743
No 142
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=81.31 E-value=3.8 Score=39.60 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=51.7
Q ss_pred CcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-eccCCCccccceeeechhhhccccCccceeec
Q 041227 27 GKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TMGSSRSGIVGEALVNLASYMNSKTSVPLTLP 105 (1468)
Q Consensus 27 GKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-SmGSSRSgiLGEasINLAdYaeAtkP~sVSLP 105 (1468)
|..+.||. ..-.+-+..|...++=.+ .++ .....+|.| .-+..+..++|.+.|++++..... ....-+|
T Consensus 37 ~~~~~kT~-~~~~t~~P~W~e~f~~~v---~~~-----~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~-~~~~w~~ 106 (121)
T cd08391 37 GAQTFKSK-VIKENLNPKWNEVYEAVV---DEV-----PGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKG-FIDEWLP 106 (121)
T ss_pred CCEeEEcc-ccCCCCCCcccceEEEEe---CCC-----CCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccC-ccceEEE
Confidence 44555543 222344556666543222 121 123445554 323337889999999999998754 4678999
Q ss_pred cCCCCCCCeEEEEee
Q 041227 106 LKKCNSGTSLQLKIQ 120 (1468)
Q Consensus 106 LK~cnsGTVLHVtIQ 120 (1468)
|+.+.+|-| |+.+|
T Consensus 107 L~~~~~G~~-~~~~~ 120 (121)
T cd08391 107 LEDVKSGRL-HLKLE 120 (121)
T ss_pred CcCCCCceE-EEEEe
Confidence 999988877 88776
No 143
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.98 E-value=38 Score=40.38 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=82.4
Q ss_pred HhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHH
Q 041227 1007 LRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIE 1086 (1468)
Q Consensus 1007 l~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lie 1086 (1468)
|.-|..|-+.|+.+.+-++.+|--|+.... .+|.+..+....|...-.-.=+....|..|.......-+
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q-----------~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre 79 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQ-----------ALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESRE 79 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHH
Confidence 455667777888888888777777766554 334445444444422221111222244566555566667
Q ss_pred HhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHH-HHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhh
Q 041227 1087 ECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVE-ALEEKYLSMLEEISSKEKALNLELDALLHENRK 1164 (1468)
Q Consensus 1087 ec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve-~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~ 1164 (1468)
..+.|+.-..+||...-|+.|.|-.|=.++..-+-.++..--+.. .=-+.|-.-+|.+..+-..|-.++.+++.|..+
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeE 158 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEE 158 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888887777665544432211100 001122222344444444555555555555443
No 144
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.68 E-value=1.3e+02 Score=37.49 Aligned_cols=128 Identities=21% Similarity=0.228 Sum_probs=83.2
Q ss_pred hhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhh
Q 041227 1147 KEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADK 1226 (1468)
Q Consensus 1147 KEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdk 1226 (1468)
||+-+..+ +.|..|-+-|.| ++-++..||..+++|||-=|.-|-.-.++ -| -.|-+|++--
T Consensus 267 reqElrae-E~l~Ee~rrhrE-------il~k~eReasle~Enlqmr~qqleeente-----lR------s~~arlksl~ 327 (502)
T KOG0982|consen 267 REQELRAE-ESLSEEERRHRE-------ILIKKEREASLEKENLQMRDQQLEEENTE-----LR------SLIARLKSLA 327 (502)
T ss_pred HhhhhhHH-HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH------HHHHHHHHHH
Confidence 34444443 456777777776 78899999999999999777665432211 11 1355666666
Q ss_pred HHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhc
Q 041227 1227 AVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLE 1304 (1468)
Q Consensus 1227 A~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LE 1304 (1468)
-+|.-..|-...++...--|+...|..++..-.-|. . .--+++-..+|+++.+-.-+-++-.+..++
T Consensus 328 dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lr----r-------fq~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 328 DKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILR----R-------FQEEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667766666666666666677666666554433332 1 345677888888888877777776666665
No 145
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.63 E-value=23 Score=36.79 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhh
Q 041227 293 KIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKE 359 (1468)
Q Consensus 293 tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~ 359 (1468)
.|++|.+.++ .++.|+++|+.++..=.+....+..||..|-.+.|.++....++.....+
T Consensus 17 ~ve~L~s~lr-------~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~e 76 (120)
T PF12325_consen 17 LVERLQSQLR-------RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQE 76 (120)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554 34467777777777777777777777777777777776555544444443
No 146
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=80.32 E-value=3.3 Score=41.74 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=40.4
Q ss_pred cccchhcccccCcchhhhhhhheeeEE-ec-cCCCccccceeeechhhhc-cccCccceeeccC
Q 041227 47 ETFSESIWIPQDNALKEIEECLIKLVV-TM-GSSRSGIVGEALVNLASYM-NSKTSVPLTLPLK 107 (1468)
Q Consensus 47 dPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYa-eAtkP~sVSLPLK 107 (1468)
+|+|.-+.........+..+.-.+|.| .- +.++..+||++.|.|++.- ..-.++++.|||+
T Consensus 64 nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 64 NPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 666644433322333444555566665 32 4568899999999999883 3367899999986
No 147
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.06 E-value=2.2e+02 Score=39.89 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=23.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccc
Q 041227 981 EMEVHLHELEEENLQLSERICGLEAQLRYLTNERESS 1017 (1468)
Q Consensus 981 elE~hls~Le~En~qLserisgLEaql~~lt~E~es~ 1017 (1468)
+|+-.|.+|..+..++-.+|..|+++++.|+.|+++.
T Consensus 746 el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 746 ELDARLAAVDDELAELARELRALGARQRALADELAGA 782 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445566666666666666666666667777776554
No 148
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=78.56 E-value=5.4 Score=39.51 Aligned_cols=61 Identities=21% Similarity=0.413 Sum_probs=44.4
Q ss_pred hheeeEE-ec-cCCCccccceeeechhhhccccCccceeeccCCC---CCCCeEEEEeeeecCCCCC
Q 041227 67 CLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKC---NSGTSLQLKIQCLTPRAKI 128 (1468)
Q Consensus 67 KIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~c---nsGTVLHVtIQ~Lt~kt~~ 128 (1468)
...+|.| .. +.++..++|.|.|++++.... ....+.+||... ..|+-|||+++...+..+.
T Consensus 57 ~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~-~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 57 ESLEIVVKDYEKVGRNRLIGSATVSLQDLVSE-GLLEVTEPLLDSNGRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEhhHcccC-CceEEEEeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence 3445544 33 335678999999999998864 457888999533 3467999999988876664
No 149
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.34 E-value=1.1e+02 Score=35.83 Aligned_cols=113 Identities=21% Similarity=0.235 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhh-hhhhhHHHHhhhHHHhHHHHHHHHhhhhh
Q 041227 1029 MSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQ-ATAEGLIEECSLLQKSNAELRKQKVNLHE 1107 (1468)
Q Consensus 1029 ~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQ-aT~e~lieec~slQ~~~~eLr~qklelh~ 1107 (1468)
..+|.=-+.++++|++|.+++++...+.+.+---.--|-+.+|- |+- .-+. -..--+-|..-+.-++.+|.-||.
T Consensus 37 ~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Ke---k~e~q~~q-~y~q~s~Leddlsqt~aikeql~k 112 (333)
T KOG1853|consen 37 NEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKE---KQEDQRVQ-FYQQESQLEDDLSQTHAIKEQLRK 112 (333)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677888888888888777765543222222222221 110 0011 112234567778888999999999
Q ss_pred hhHHHHHH---hhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhh
Q 041227 1108 HCAVLEAQ---LGESEKGFSSLSMKVEALEEKYLSMLEEISSKE 1148 (1468)
Q Consensus 1108 ~~t~lE~k---L~eS~~~f~~~~k~Ve~LE~kl~s~le~issKE 1148 (1468)
|+..|||. |..+++-. ...++++|.+|.--.|-+|.-|
T Consensus 113 yiReLEQaNDdLErakRat---i~sleDfeqrLnqAIErnAfLE 153 (333)
T KOG1853|consen 113 YIRELEQANDDLERAKRAT---IYSLEDFEQRLNQAIERNAFLE 153 (333)
T ss_pred HHHHHHHhccHHHHhhhhh---hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999986 44444433 3347888999988888887544
No 150
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=78.26 E-value=1.4e+02 Score=36.63 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=39.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhh-----------hhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 041227 1215 AVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGT-----------LRMESQTKIQQLKSELAAARQNQEVLMADHEKLL 1283 (1468)
Q Consensus 1215 av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~-----------l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~ 1283 (1468)
.+-.++.+....+..++.+.++++++...++++.. .......++..+-.+|+..+. -+..+|.++.
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~---~y~~~hP~v~ 278 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRL---RYTDKHPDVI 278 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHH---HhcccChHHH
Confidence 34556666666666666666666666666655442 111334455555555554442 3567777776
Q ss_pred HHH
Q 041227 1284 NLL 1286 (1468)
Q Consensus 1284 ~ll 1286 (1468)
.+-
T Consensus 279 ~l~ 281 (498)
T TIGR03007 279 ATK 281 (498)
T ss_pred HHH
Confidence 653
No 151
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.07 E-value=1.5e+02 Score=36.92 Aligned_cols=43 Identities=33% Similarity=0.421 Sum_probs=27.2
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHh
Q 041227 1245 SNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLE 1287 (1468)
Q Consensus 1245 s~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle 1287 (1468)
..|..++.|-+.++..|..+|.+=.+.-+.|.++...+..++.
T Consensus 199 ~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 199 AKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455566666777777777777766666666666555555544
No 152
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=78.00 E-value=1.3e+02 Score=39.58 Aligned_cols=254 Identities=22% Similarity=0.258 Sum_probs=125.1
Q ss_pred hhHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhchhhhhHHHHHHHH-hhcccCCCCCCCCcc
Q 041227 396 ANLAIQLNKTQESNIELISILQELEETLAKQKMEIEDLSKMKSEFEEVVGDSKQINTAKQILVK-KRRDTSCDSDQEGSI 474 (1468)
Q Consensus 396 aNL~LQLqKTQESN~ELVlaVQDLEEmLEqk~~EIs~LS~~~~e~dd~~~d~~q~~~~~~~lVK-~~~da~c~~~~e~s~ 474 (1468)
.+|+.|+-|.-+|...+.-- .|.+|||+-+.|+.. ++..+..- .--...++ +++ +..+|+|.--...-.
T Consensus 439 ekLk~eilKAk~s~~~~~~~--~L~e~IeKLk~E~d~------e~S~A~~~-~gLk~kL~-~Lr~E~sKa~~~~~~~~~~ 508 (762)
T PLN03229 439 EKLKEQILKAKESSSKPSEL--ALNEMIEKLKKEIDL------EYTEAVIA-MGLQERLE-NLREEFSKANSQDQLMHPV 508 (762)
T ss_pred HHHHHHHHhcccccCCCCCh--HHHHHHHHHHHHHHH------HHHHhhhh-hhHHHHHH-HHHHHHHhcccccccccHH
Confidence 35777777776555444332 577999999999873 22222110 00001222 344 667777655555556
Q ss_pred ccccccchhhhhhc-----ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHhHHh
Q 041227 475 VEHPIRDLNAKIEQ-----QDDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAEWRSRIA 549 (1468)
Q Consensus 475 lE~kI~dL~~eIEl-----~D~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e~~~kls 549 (1468)
|-.||.-|..||.- -+...|---|+-|.+--+ ... |.+. +-.......+.+.++-
T Consensus 509 L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~-----~~~----~s~g-----------~~~a~~Lk~ei~kki~ 568 (762)
T PLN03229 509 LMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSR-----AKA----LSEK-----------KSKAEKLKAEINKKFK 568 (762)
T ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHH-----hhh----hccc-----------chhhhhhhHHHHHHHH
Confidence 66778888888855 344466666666654221 000 0000 0012222223333322
Q ss_pred H---HHHhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHH-HHHHhhhhhhHHhHHHHHHhhhhcccccc
Q 041227 550 E---KEENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVL-ELEKDCNELTEENLALLFKLKESGKDLLT 625 (1468)
Q Consensus 550 ~---kE~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvq-eLE~dc~ELtdEnl~l~~klkEs~~~~~~ 625 (1468)
+ .=+-...+++-+.+++.. | +.....-|.+|...|+.++..|. +++.=++-.-=++.++ .|+ +.-+
T Consensus 569 e~~~~~~~kek~ea~~aev~~~---g-~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~-~k~-e~a~---- 638 (762)
T PLN03229 569 EVMDRPEIKEKMEALKAEVASS---G-ASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGV-TKK-NKDT---- 638 (762)
T ss_pred HhcccHHHHHHHHHHHHHHHhc---C-ccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh-hhh-hhcc----
Confidence 2 001112233334444441 1 22333667788888888888776 6665555443334422 222 2111
Q ss_pred CCCCCCCCCCCCccccchhHHHHHhHhHhhhHHHHHHHHHHHHhhhhcccccchHHHHHHhh--------hhhhcchhhH
Q 041227 626 GGASSHECPDNKSVFESESEVVQLKSQICKLEEELQERNALIERLSTYENRSDDLENQLQAF--------KDKVCYLDGE 697 (1468)
Q Consensus 626 ~~~s~~~~~~~~~~~~~es~~~~l~~q~~~leee~~~~~~~~~~~~~~~~k~~dlel~~~~f--------k~~~~~le~~ 697 (1468)
++..+- ..++..|+.|+++.+++=.-.-...+|.+|...|.+.+..- +.++--|+++
T Consensus 639 --~~~~p~-------------~~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~q 703 (762)
T PLN03229 639 --AEQTPP-------------PNLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQ 703 (762)
T ss_pred --cccCCC-------------hhhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 111111 12345677787777766333333557777777776665332 2444455555
Q ss_pred hHhhHHH
Q 041227 698 LCKSRFR 704 (1468)
Q Consensus 698 l~~~~~~ 704 (1468)
.++...+
T Consensus 704 ik~~~~~ 710 (762)
T PLN03229 704 IKQKIAE 710 (762)
T ss_pred HHHHHHH
Confidence 5555444
No 153
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.86 E-value=40 Score=39.38 Aligned_cols=144 Identities=15% Similarity=0.227 Sum_probs=103.2
Q ss_pred HHHHHhhhhcccccchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhh--------hhcccccCCCCCC
Q 041227 664 NALIERLSTYENRSDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELF--------QGKEAESKDHPAA 735 (1468)
Q Consensus 664 ~~~~~~~~~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~--------~~~e~e~~~~~~~ 735 (1468)
..+.++.++.+++..+|-.++..--.+.-.+++++.+++.+++.-+-+|.+++..+..- |++-.-+..+ .-
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t-~Y 119 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTAT-SY 119 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh-HH
Confidence 33555666777777788888888888888888888888888888888888777766432 3333222222 23
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCccchhhHHHHHHHHhhHHHHHHHH
Q 041227 736 VCPLCKIYESDDFLEMSRLLSELYEQIQLSLANLKKQQLLQQPSAFGSDKSIVPTSTDLTTQKERVEAILNNFMELKRLF 815 (1468)
Q Consensus 736 ~~~~~~~~~~~~~~~~s~~~sel~~ql~~~l~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~qk~~ve~~l~~~~~l~~l~ 815 (1468)
+-+++.+..-..||.|-..++.++..=+-.|.+.|++ ...+.+.+.-|+.-++.|+-+..-|
T Consensus 120 idvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~d------------------k~~Le~kq~~l~~~~e~l~al~~e~ 181 (265)
T COG3883 120 IDVILNSKSFSDLISRVTAISVIVDADKKILEQQKED------------------KKSLEEKQAALEDKLETLVALQNEL 181 (265)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777788888888888888888888888863 3456777788888888888888888
Q ss_pred HHhhhchhHhh
Q 041227 816 EEKINLSEDEI 826 (1468)
Q Consensus 816 e~~~~~~e~e~ 826 (1468)
+..+..+++..
T Consensus 182 e~~~~~L~~qk 192 (265)
T COG3883 182 ETQLNSLNSQK 192 (265)
T ss_pred HHHHHHHHHHH
Confidence 88777777554
No 154
>PF14992 TMCO5: TMCO5 family
Probab=77.53 E-value=37 Score=39.85 Aligned_cols=168 Identities=24% Similarity=0.302 Sum_probs=104.3
Q ss_pred hchhHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhchhhhhHHHHHHHHhhcccCCCCCCCCc
Q 041227 394 SNANLAIQLNKTQESNIELISILQELEETLAKQKMEIEDLSKMKSEFEEVVGDSKQINTAKQILVKKRRDTSCDSDQEGS 473 (1468)
Q Consensus 394 ~NaNL~LQLqKTQESN~ELVlaVQDLEEmLEqk~~EIs~LS~~~~e~dd~~~d~~q~~~~~~~lVK~~~da~c~~~~e~s 473 (1468)
+|.+|.-.+|+.-|+|-.|+.-++.=|+++----+||...-+.-...||. +..
T Consensus 5 Ln~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e-----------~~~---------------- 57 (280)
T PF14992_consen 5 LNMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEE-----------DII---------------- 57 (280)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHH-----------hhh----------------
Confidence 68888999999999999999999999999888888888754433222221 111
Q ss_pred cccccccchhhhhhcccchhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHH---HHhHHhH
Q 041227 474 IVEHPIRDLNAKIEQQDDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAE---WRSRIAE 550 (1468)
Q Consensus 474 ~lE~kI~dL~~eIEl~D~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e---~~~kls~ 550 (1468)
.+++= .|..+|+.+...|....+-+--.|+.|++...++.+++..+..--.+.+..-+.. -..-...
T Consensus 58 -~~~~e---------~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~ 127 (280)
T PF14992_consen 58 -SEERE---------TDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCAS 127 (280)
T ss_pred -hhchH---------HHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHH
Confidence 11111 3445677788888888888888889999998888887644332222333322211 1111334
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 041227 551 KEENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLA 611 (1468)
Q Consensus 551 kE~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~ 611 (1468)
.|.+|+.++.-...+-.+++ |-..+|..||.+++-+|. |.|.+-=|-+
T Consensus 128 qE~ei~kve~d~~~v~~l~e------------Dq~~~i~klkE~L~rmE~-ekE~~lLe~e 175 (280)
T PF14992_consen 128 QEKEIAKVEDDYQQVHQLCE------------DQANEIKKLKEKLRRMEE-EKEMLLLEKE 175 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 55555555544444333221 223478888888888887 7655443333
No 155
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.31 E-value=1.2e+02 Score=33.77 Aligned_cols=114 Identities=19% Similarity=0.284 Sum_probs=93.9
Q ss_pred hhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhh
Q 041227 1163 RKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKL 1242 (1468)
Q Consensus 1163 ~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~ 1242 (1468)
+.|+..|....+..|-|-..=..-+..|..||..+.. .....+....+...|--.|+.--++++....+++.++..
T Consensus 5 ~~He~af~~iK~YYndIT~~NL~lIksLKeei~emkk----~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 5 KNHEKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKK----KEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4688888889999999999999999999999999554 566677888999999999999999999999999999999
Q ss_pred hhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHH
Q 041227 1243 SESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEK 1281 (1468)
Q Consensus 1243 ~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek 1281 (1468)
|+..--.|. -.+.+++.+..+|...+.-+++|---..+
T Consensus 81 y~kdK~~L~-~~k~rl~~~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 81 YEKDKQSLQ-NLKARLKELEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998766666 67777777888887777777775544433
No 156
>PF15294 Leu_zip: Leucine zipper
Probab=77.30 E-value=78 Score=37.33 Aligned_cols=153 Identities=25% Similarity=0.264 Sum_probs=90.8
Q ss_pred hhhhhhhhhhh-hhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhh----hhccchhhhccchhhhhhHHHHHHHH
Q 041227 964 VNRNLESKSLE-LESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTN----ERESSRLELENSATHAMSLQDEIRRL 1038 (1468)
Q Consensus 964 ~n~~le~k~~e-les~K~elE~hls~Le~En~qLserisgLEaql~~lt~----E~es~~l~l~nS~s~~~~Lqdei~r~ 1038 (1468)
+|..|-|++-+ -+...-.|..-|++|| |.+|-+.|+..|.+--.-.. +.-..+|.-.|-.--+.-|+.+|+||
T Consensus 60 tn~lllrql~~qAek~~lkl~~diselE--n~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rL 137 (278)
T PF15294_consen 60 TNVLLLRQLFSQAEKWYLKLQTDISELE--NRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRL 137 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHH--HHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHH
Confidence 46677777443 3444445666677765 89999999988765432222 22333566665555567799999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHH------HH---hhhhhhh
Q 041227 1039 EAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRK------QK---VNLHEHC 1109 (1468)
Q Consensus 1039 ~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~------qk---lelh~~~ 1109 (1468)
++|++.= |-++...+.+- -..++|-+-|+....+||. -+ .--....
T Consensus 138 q~EN~kL----k~rl~~le~~a---------------------t~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l 192 (278)
T PF15294_consen 138 QEENEKL----KERLKSLEKQA---------------------TSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDL 192 (278)
T ss_pred HHHHHHH----HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccch
Confidence 9988753 33444444444 4455555566666666655 11 1122345
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhh
Q 041227 1110 AVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISS 1146 (1468)
Q Consensus 1110 t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~iss 1146 (1468)
+.||.++...+ .+|.+++..++....++-++..+
T Consensus 193 ~dLE~k~a~lK---~e~ek~~~d~~~~~k~L~e~L~~ 226 (278)
T PF15294_consen 193 SDLENKMAALK---SELEKALQDKESQQKALEETLQS 226 (278)
T ss_pred hhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777665 45556666666666655554443
No 157
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.60 E-value=7.4 Score=36.85 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=56.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHH
Q 041227 981 EMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEA 1044 (1468)
Q Consensus 981 elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~ 1044 (1468)
.||-.+..|-.-+-.+...|+..+..+..|+.||++..-++...-..+..|++++..+..+.+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888899999999999999999999999999999999999999999988877554
No 158
>PLN02939 transferase, transferring glycosyl groups
Probab=74.81 E-value=1.1e+02 Score=41.48 Aligned_cols=229 Identities=24% Similarity=0.306 Sum_probs=121.9
Q ss_pred HHHHHhhh------hhHH-HhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcc
Q 041227 1174 SLLNQMYM------EKTV-EAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESN 1246 (1468)
Q Consensus 1174 ~llnq~~~------Ek~v-evenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~ 1246 (1468)
-+|||.-. +|+. |-+.||.+|.-|.-.+|.| |.|-..+++ .+..+.+.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------------~~~~~~~~~~~ 202 (977)
T PLN02939 145 LLLNQARLQALEDLEKILTEKEALQGKINILEMRLSET-DARIKLAAQ---------------------EKIHVEILEEQ 202 (977)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-hhhhhhhhh---------------------ccccchhhHHH
Confidence 36888753 4443 5677888888888888877 333333332 22333445556
Q ss_pred hhhhhhhHHHHH-------HHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHh----------hhhhhhhhcccccc
Q 041227 1247 LGTLRMESQTKI-------QQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEK----------FRGTIRGLELKLKA 1309 (1468)
Q Consensus 1247 l~~l~~Es~~ki-------~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneek----------lk~t~~~LElklk~ 1309 (1468)
|+.|+.|--... ..|..+|+.-|.---.|+.|.+-|..-+-+++-.++- |.+++++||.|+-+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (977)
T PLN02939 203 LEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIV 282 (977)
T ss_pred HHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666665543332 2366777777766566667777777666666666665 56778888888753
Q ss_pred chHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhh
Q 041227 1310 SDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSE 1389 (1468)
Q Consensus 1310 s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~se 1389 (1468)
+ |.=+-+.+.|+.-. +=+-|-.|+--|+.+.-.-+. ..-+..+.--|-+||-.++..+.|
T Consensus 283 ~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 342 (977)
T PLN02939 283 A----QEDVSKLSPLQYDC-----WWEKVENLQDLLDRATNQVEK-----------AALVLDQNQDLRDKVDKLEASLKE 342 (977)
T ss_pred h----hhhhhhccchhHHH-----HHHHHHHHHHHHHHHHHHHHH-----------HHHHhccchHHHHHHHHHHHHHHH
Confidence 3 22222333332221 112222233333332211111 111123344455666666666666
Q ss_pred hhhhhhh--hhH-HHHHHHhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 041227 1390 LDDCKRK--KVA-LQEKVLRLEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKE 1450 (1468)
Q Consensus 1390 led~k~s--k~s-leeKl~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~e 1450 (1468)
..-.|-+ ++. ||.|+-+++.-+-+ -++|++..+.--.-.-.+||..+..|-.|.+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 343 ANVSKFSSYKVELLQQKLKLLEERLQA------SDHEIHSYIQLYQESIKEFQDTLSKLKEESK 400 (977)
T ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5544433 222 55777776654433 3456666665555556666666666655543
No 159
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=74.68 E-value=1.5e+02 Score=33.17 Aligned_cols=93 Identities=26% Similarity=0.337 Sum_probs=52.7
Q ss_pred hHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccccccChhHHHHHHHHHHhhhhhhchhHHHhHhhhhhhhH
Q 041227 331 SLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKFQARDTDKKINELEDEIKFQKESNANLAIQLNKTQESNI 410 (1468)
Q Consensus 331 dLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~e~eD~~~lleELrdEL~yEKE~NaNL~LQLqKTQESN~ 410 (1468)
.|.-+|..++.+-+.|+.|..=||..+.+ ..++- +.+--...+.+.++-=..+|+ .+|+-+|.++|+.+-
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~R-q~kAL--~k~e~~e~~Lpqll~~h~eEv-------r~Lr~~LR~~q~~~r 85 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKR-QEKAL--QKYEDTEAELPQLLQRHNEEV-------RVLRERLRKSQEQER 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 45555555555555555555555555543 22111 111111234445554444444 358899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 041227 411 ELISILQELEETLAKQKMEIEDL 433 (1468)
Q Consensus 411 ELVlaVQDLEEmLEqk~~EIs~L 433 (1468)
++---+++.+.-|..-+.++..|
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777776665555544
No 160
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=74.01 E-value=2.1e+02 Score=34.68 Aligned_cols=307 Identities=22% Similarity=0.292 Sum_probs=149.4
Q ss_pred hhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhh----hhhhhH
Q 041227 876 ETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLN----DLQSEI 951 (1468)
Q Consensus 876 ~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld----~~~~dl 951 (1468)
+.++.+.....+|...|. .|.+.-.++...|.-|...|..||..++.+..-=.|+..||. -...|+
T Consensus 43 ~~~~~L~~Ri~di~~wk~----------eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dl 112 (384)
T PF03148_consen 43 DSNKRLRQRIRDIRFWKN----------ELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDL 112 (384)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCccc
Confidence 334555556666665533 355556677788888899999999999999988899999983 222222
Q ss_pred HHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhh--hhccchhhhccchhhhh
Q 041227 952 MVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTN--ERESSRLELENSATHAM 1029 (1468)
Q Consensus 952 ~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~--E~es~~l~l~nS~s~~~ 1029 (1468)
. .- .+-.-|-+.+.-++.++.-|+..|.........|-.--..||.-+.+=.. .-+..-+.|.|. |.-+
T Consensus 113 v--~D------~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~-S~~i 183 (384)
T PF03148_consen 113 V--HD------EVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNN-STNI 183 (384)
T ss_pred C--CC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cCCC
Confidence 2 11 11222333344455555555555555554444444444444433332221 222222333222 1112
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhh----hhhhhHHhhcCchhhhhhhhHHHHhhh-----HHHhHHHHHH
Q 041227 1030 SLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGV----QEECEYLKVANPKLQATAEGLIEECSL-----LQKSNAELRK 1100 (1468)
Q Consensus 1030 ~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~----Qee~e~Lr~~N~kLQaT~e~lieec~s-----lQ~~~~eLr~ 1100 (1468)
.++.-+.|.... ...-..|... =..++-.+.+-..|-.++++++..... -.+-|.-|++
T Consensus 184 ~~~~~~~r~~~~------------~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~ 251 (384)
T PF03148_consen 184 SYKPGSTRIPKN------------SSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRK 251 (384)
T ss_pred cccCCccccccc------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222210 0011123211 112223333444555566655554433 2334556666
Q ss_pred HHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHH-HHHHHh
Q 041227 1101 QKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEE-SLLNQM 1179 (1468)
Q Consensus 1101 qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~-~llnq~ 1179 (1468)
..-+...-.+.||-.|+.-..-+.++-+.++.|+.-+. -|+-.|. .|| .|-|+-
T Consensus 252 Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~-------~k~~~lk------------------vaqTRL~~R~ 306 (384)
T PF03148_consen 252 RIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIR-------DKEGPLK------------------VAQTRLENRT 306 (384)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHhhHH------------------HHHHHHhhHh
Confidence 66666666666666666555555555444444444333 2222221 111 111111
Q ss_pred hhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHH
Q 041227 1180 YMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKI 1258 (1468)
Q Consensus 1180 ~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki 1258 (1468)
| ---||+-.. ...-.-+-||..|+.-.+.|...|.+.+..+.........|..+-..|-
T Consensus 307 ~---RP~vElcrD-----------------~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~ 365 (384)
T PF03148_consen 307 Q---RPNVELCRD-----------------PPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKN 365 (384)
T ss_pred c---CCchHHHHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 001111111 1222334578888888888888887777777766666666655554443
No 161
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=73.82 E-value=3.3e+02 Score=36.80 Aligned_cols=122 Identities=22% Similarity=0.276 Sum_probs=61.9
Q ss_pred hhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhH
Q 041227 990 EEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEY 1069 (1468)
Q Consensus 990 e~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~ 1069 (1468)
+.-..+|+.-++++=+|+-.++.| ++..+.-++..+. ++.--+++-|+---++-+||+.
T Consensus 332 ~~~~~~~~~e~~~~~~~l~~~~~e----------ar~~~~q~~~ql~-----------~le~~~~e~q~~~qe~~~e~eq 390 (980)
T KOG0980|consen 332 ELQIEQLSREVAQLKAQLENLKEE----------ARRRIEQYENQLL-----------ALEGELQEQQREAQENREEQEQ 390 (980)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHH----------HHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHH
Confidence 344456667777777776655443 2333333333333 3333344444444444455555
Q ss_pred HhhcCchhhhhhh------hHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHH
Q 041227 1070 LKVANPKLQATAE------GLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEE 1135 (1468)
Q Consensus 1070 Lr~~N~kLQaT~e------~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~ 1135 (1468)
||-.-..|-|+-. ++|+|- .+.+--...|--++-+-+|+|.++=..--++|.|..|.++.=+.
T Consensus 391 Lr~elaql~a~r~q~eka~~~~ee~---e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~ 459 (980)
T KOG0980|consen 391 LRNELAQLLASRTQLEKAQVLVEEA---ENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ 459 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543333322211 223332 22222333444556677788888888888888887776655443
No 162
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.48 E-value=1.4e+02 Score=32.19 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=74.5
Q ss_pred hhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhh
Q 041227 989 LEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECE 1068 (1468)
Q Consensus 989 Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e 1068 (1468)
|.-||.+|.+.|-.=..+|.-|-.=--++--.+-.-+.-...+..+.. .+..+..+....+.........+..+.+
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~----~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE----RLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555555554443333333333333333333333333 3333444555566677777888888888
Q ss_pred HHhhcCchhhhhhh-----hHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhh
Q 041227 1069 YLKVANPKLQATAE-----GLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLG 1117 (1468)
Q Consensus 1069 ~Lr~~N~kLQaT~e-----~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~ 1117 (1468)
.++..|.+|+.-.+ .|+...-.......+||+.--.+...|..++.++.
T Consensus 123 k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 123 KLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888888854333 56666666666677777777777777777766553
No 163
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.34 E-value=1.3e+02 Score=32.31 Aligned_cols=41 Identities=34% Similarity=0.480 Sum_probs=20.9
Q ss_pred HhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 041227 1320 EISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILS 1363 (1468)
Q Consensus 1320 E~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S 1363 (1468)
|++.++.+++. ++.|+-.+.+.+++...+...++..++...
T Consensus 82 e~~~~~~~l~~---l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQ---LQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55555544433 335555555555555555555554444444
No 164
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=72.35 E-value=44 Score=34.54 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=21.9
Q ss_pred hhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHH
Q 041227 1066 ECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQ 1101 (1468)
Q Consensus 1066 e~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~q 1101 (1468)
+.+-|+-++..|++.+.++..-|..||...+|++++
T Consensus 38 qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 38 QKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666666666666666666666666665544
No 165
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=72.34 E-value=1.1e+02 Score=33.02 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHH-HHhHHhHHHHhHHHHHHHHHHHHHHhhh
Q 041227 495 ELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAE-WRSRIAEKEENIVNLEAKLSEVLCAQAL 571 (1468)
Q Consensus 495 EmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e-~~~kls~kE~eI~~L~~KL~~~~~~~~~ 571 (1468)
..++..++-....++.++..++..|..++ ++...=++..=--+++|.. +..+|-++..++..|+.+....+++-+.
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke-~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKE-ELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667788888888888888887 3332222221111233333 7788999999999998888777775443
No 166
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=72.34 E-value=2.7e+02 Score=35.06 Aligned_cols=106 Identities=17% Similarity=0.284 Sum_probs=50.9
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhh-HHHHHhhHHHHHHHHhhhCcchHh
Q 041227 1217 LEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQN-QEVLMADHEKLLNLLEDVKPNEEK 1295 (1468)
Q Consensus 1217 ~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn-~emL~~d~ek~~~lle~~kSneek 1295 (1468)
.|.-.||.+..-+...++..+.|+..+..++.++..+......-+-..+....+. +..+++ -..+..+-..+.+-.+-
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee 352 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-EAELRLYYQELYHYREE 352 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHH
Confidence 5566667776666666666666666666666555554444443333332222221 122222 22233333344444444
Q ss_pred hhhhhhhhccccccchHHHHHHHHHhhh
Q 041227 1296 FRGTIRGLELKLKASDYERLQLTEEISS 1323 (1468)
Q Consensus 1296 lk~t~~~LElklk~s~yErqq~~eE~s~ 1323 (1468)
+..+.+.+-++++.-+=|+|+++..+++
T Consensus 353 ~~~~~s~~~~k~~~ke~E~q~lr~~l~~ 380 (511)
T PF09787_consen 353 LSRQKSPLQLKLKEKESEIQKLRNQLSA 380 (511)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444444444333
No 167
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.03 E-value=41 Score=32.04 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhh
Q 041227 291 EVKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAK 358 (1468)
Q Consensus 291 E~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k 358 (1468)
+.+|..|+..+..+.|+..+...++-+|+++=-- ..+-+..++.+++.||.|++.|+.-++
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~-------~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDS-------AERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999988885433 344556666666666666666664443
No 168
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=69.85 E-value=48 Score=39.34 Aligned_cols=140 Identities=19% Similarity=0.268 Sum_probs=95.9
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhH
Q 041227 1093 KSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTE 1172 (1468)
Q Consensus 1093 ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~ 1172 (1468)
.-+.+-|-----+|.+-+-.|+++++..-.... |=..|+--||-|+|.||+||.+|..|.|+-|..-.-+..+
T Consensus 220 ~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldk-------lh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~ 292 (384)
T KOG0972|consen 220 QDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDK-------LHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSEL 292 (384)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777888888889999887654433 4456777899999999999999999999998876655444
Q ss_pred HHHHHHhhh---hhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhh
Q 041227 1173 ESLLNQMYM---EKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSE 1244 (1468)
Q Consensus 1173 ~~llnq~~~---Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~e 1244 (1468)
..--||..- ++|.++. |||.=-+|+-.--+||....||..- |-..|.-.+||+...++.+-++-+.+
T Consensus 293 ~e~y~q~~~gv~~rT~~L~----eVm~e~E~~KqemEe~G~~msDGap-lvkIkqavsKLk~et~~mnv~igv~e 362 (384)
T KOG0972|consen 293 REKYKQASVGVSSRTETLD----EVMDEIEQLKQEMEEQGAKMSDGAP-LVKIKQAVSKLKEETQTMNVQIGVFE 362 (384)
T ss_pred HHHHHHhcccHHHHHHHHH----HHHHHHHHHHHHHHHhcccccCCch-HHHHHHHHHHHHHHHHhhhhheehhh
Confidence 444444332 2333332 4444445555555778888877654 33456678899988888876665544
No 169
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=69.65 E-value=7.2 Score=39.05 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=46.6
Q ss_pred ccccccCC---cc-c-eeEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-e--cc
Q 041227 5 IWELQVPK---GW-D-KLVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-T--MG 76 (1468)
Q Consensus 5 FhATQVP~---Gw-D-kLfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-S--mG 76 (1468)
.+|..+|. |. | -.-|.+.|........ |+.|..+++ +|+|.-+=.. +.....+..+| .|.| . .+
T Consensus 19 i~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~---kT~v~~~t~---~P~~nE~F~f-~v~~~~~~~~l-~v~V~~~~~~ 90 (119)
T cd08685 19 LEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQ---KTSTVPDSA---NPLFHETFSF-DVNERDYQKRL-LVTVWNKLSK 90 (119)
T ss_pred EEEECCCCCCCCCCCeeEEEEEEeCCCCcceE---eCccccCCC---CCccccEEEE-EcChHHhCCEE-EEEEECCCCC
Confidence 35555553 33 2 3334566754333222 445666665 6666433222 23334444555 4666 2 24
Q ss_pred CCCccccceeeechhhhcc
Q 041227 77 SSRSGIVGEALVNLASYMN 95 (1468)
Q Consensus 77 SSRSgiLGEasINLAdYae 95 (1468)
+.++.+||++.|.+++++.
T Consensus 91 ~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred cCCCEEEEEEEecHHHhcc
Confidence 4568999999999999973
No 170
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.54 E-value=50 Score=39.00 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=22.5
Q ss_pred hhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHh
Q 041227 1298 GTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERI 1374 (1468)
Q Consensus 1298 ~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~ 1374 (1468)
..+.+|+..+....+|+.+++.=...|+ .......++..+..++..++-|..+|..-|.-+..++++|.++-.
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~----~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFLKKLE----EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp -------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777788877776555544 222334455566666666666666666666555555555555433
No 171
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=69.26 E-value=12 Score=37.22 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=38.0
Q ss_pred heeeEE-ec-cCCCccccceeeechhhhccccCc-----cceeeccC----CCCCCCeEEEEeeee
Q 041227 68 LIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTS-----VPLTLPLK----KCNSGTSLQLKIQCL 122 (1468)
Q Consensus 68 IYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP-----~sVSLPLK----~cnsGTVLHVtIQ~L 122 (1468)
...|.| .- ..++..++|.+.|.+++......+ ....+||. ...++..|||++..|
T Consensus 68 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 68 RLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred EEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 345555 22 335678999999999999876543 24566775 345678899988754
No 172
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=69.14 E-value=9.6 Score=38.12 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=40.8
Q ss_pred hhheeeEEec--cCCCccccceeeechhhhccc-cCccceeeccCCCCCCCeEEEEeeeec
Q 041227 66 ECLIKLVVTM--GSSRSGIVGEALVNLASYMNS-KTSVPLTLPLKKCNSGTSLQLKIQCLT 123 (1468)
Q Consensus 66 EKIYKfVVSm--GSSRSgiLGEasINLAdYaeA-tkP~sVSLPLK~cnsGTVLHVtIQ~Lt 123 (1468)
.+...|.|=- ...+..++|.+.|.|+++... ......-+||. ..|.| ||.|++-+
T Consensus 73 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l-~l~~~~~~ 130 (132)
T cd04014 73 GRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKL-HVKIELKG 130 (132)
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEE-EEEEEEec
Confidence 4677777732 224578999999999999985 56678999998 34655 99887644
No 173
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=68.87 E-value=1.2e+02 Score=34.13 Aligned_cols=121 Identities=26% Similarity=0.345 Sum_probs=70.6
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhh
Q 041227 985 HLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQ 1064 (1468)
Q Consensus 985 hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Q 1064 (1468)
++++|+....+-...++.|-.+|..|. +-..+=.....+|..++.++.....+...++++++.++..-.
T Consensus 48 q~~~Lq~qLlq~~k~~~~l~~eLq~l~-----------~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK 116 (206)
T PF14988_consen 48 QTSELQDQLLQKEKEQAKLQQELQALK-----------EFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEK 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444332 222333445566677777777777777777777776664322
Q ss_pred hhh-------hH--H-hhcCchh--------hhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHh
Q 041227 1065 EEC-------EY--L-KVANPKL--------QATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQL 1116 (1468)
Q Consensus 1065 ee~-------e~--L-r~~N~kL--------QaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL 1116 (1468)
--. .. | +++..+| -|.+.++.+-|.++..-|..||+.-+-+-..+..|++.-
T Consensus 117 ~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~ 186 (206)
T PF14988_consen 117 ARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARK 186 (206)
T ss_pred HHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11 1 3333332 135678999999999999999998888777777776643
No 174
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.82 E-value=1.6e+02 Score=31.59 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHH
Q 041227 292 VKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLK 354 (1468)
Q Consensus 292 ~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLK 354 (1468)
..+..|..|+..+++....+..++..++.....-..--++....+.++...+..+.+|+..+.
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333333334444444444444444444443
No 175
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=68.39 E-value=1.5e+02 Score=30.71 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=47.4
Q ss_pred hhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHH
Q 041227 1212 HSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKL 1282 (1468)
Q Consensus 1212 ~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~ 1282 (1468)
++.+|-.++.||++-..+...+..++..+.-+...|+....-.+..=..|..+++.++..-+=|..=+.-|
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777666666666666666666666655554444333
No 176
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=67.86 E-value=9.7 Score=37.46 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=44.3
Q ss_pred cCccccccccchhcccccCcchhhhhhhheeeEE-eccC-CCccccceeeechhhhccccCc----cceeeccCCCC--C
Q 041227 40 NGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TMGS-SRSGIVGEALVNLASYMNSKTS----VPLTLPLKKCN--S 111 (1468)
Q Consensus 40 nG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-SmGS-SRSgiLGEasINLAdYaeAtkP----~sVSLPLK~cn--s 111 (1468)
+.+..|...++=.+.-. .-+. .....+|.| .-+. .+..+||++.|.++++.....+ ...+.||.+-+ .
T Consensus 44 ~~~P~Wne~f~f~v~~~---~~~~-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~ 119 (125)
T cd04051 44 GTNPTWNETLRFPLDER---LLQQ-GRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119 (125)
T ss_pred CCCCCCCCEEEEEcChH---hccc-CccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc
Confidence 35788888766443221 1001 123344444 5554 5678999999999999987653 36778886432 4
Q ss_pred CCeEE
Q 041227 112 GTSLQ 116 (1468)
Q Consensus 112 GTVLH 116 (1468)
+.+||
T Consensus 120 ~G~~~ 124 (125)
T cd04051 120 QGVLN 124 (125)
T ss_pred CeEEe
Confidence 44555
No 177
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.38 E-value=26 Score=41.26 Aligned_cols=90 Identities=26% Similarity=0.362 Sum_probs=62.5
Q ss_pred hhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhH
Q 041227 967 NLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQK 1046 (1468)
Q Consensus 967 ~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk 1046 (1468)
.+...+..++.-..++...|.+||.|..+|...|..|+++...+..+-+ +.-+..+...-+.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~------------------~~~~~~n~~~~~l 108 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE------------------EYWREYNELQLEL 108 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
Confidence 4555677777888888888899999999988888888888877765543 2233344555555
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhHHhhcC
Q 041227 1047 VETKQKLQDMQKRWLGVQEECEYLKVAN 1074 (1468)
Q Consensus 1047 ~~~kqk~qe~q~~wse~Qee~e~Lr~~N 1074 (1468)
.++.+..+.+..+..-++..-+-||+-|
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666666677777666777777777665
No 178
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.33 E-value=2.7e+02 Score=33.21 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=21.4
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHHhHHHHH
Q 041227 902 VEALRHCQNELENQISDLQKEKSQLEESI 930 (1468)
Q Consensus 902 ~~~l~~~k~ElE~~is~lq~Ek~qLee~~ 930 (1468)
.+..++|=+||-..|++=..-..++|+.+
T Consensus 65 LElY~~sC~EL~~~I~egr~~~~~~E~et 93 (312)
T smart00787 65 LELYQFSCKELKKYISEGRDLFKEIEEET 93 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777999999998777777666554
No 179
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.04 E-value=1.9e+02 Score=34.47 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhh---Hhhhhhhhcc
Q 041227 293 KIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKE---SEVQSTATEN 369 (1468)
Q Consensus 293 tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~---~~~~q~~~~~ 369 (1468)
+-..|-.|-..|.=+++.|.-.|+.+-..++.--+--.+..+++--+|..+|.|+.|+..||...++ .+.+++.-=.
T Consensus 99 ~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv 178 (302)
T PF09738_consen 99 SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLV 178 (302)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeC
Confidence 3344555666677777777766555555554433333455566666666666666666666655543 2233331110
Q ss_pred ccccccChhH---------HHHHHHHHHhhhhhh-chhHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 041227 370 LKFQARDTDK---------KINELEDEIKFQKES-NANLAIQLNKTQESNIELISILQELEETLAKQKMEIE 431 (1468)
Q Consensus 370 lk~e~eD~~~---------lleELrdEL~yEKE~-NaNL~LQLqKTQESN~ELVlaVQDLEEmLEqk~~EIs 431 (1468)
+--..||..+ ...=-....+-.+-. +..|-++|+|.=+.|-+|+.-|+.|...|++.+....
T Consensus 179 ~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 179 PDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred CCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0000111111 111112233333333 7789999999999999999999999999988766554
No 180
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=66.53 E-value=8 Score=39.39 Aligned_cols=74 Identities=9% Similarity=0.143 Sum_probs=50.2
Q ss_pred eEEEEEEcccC-cccccccccccccCccccccccchhcccccCcchhhhhhhheeeEEe--ccCCCccccceeeechhhh
Q 041227 17 LVVSVVLVETG-KTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVVT--MGSSRSGIVGEALVNLASY 93 (1468)
Q Consensus 17 LfVSiVp~DtG-KtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVVS--mGSSRSgiLGEasINLAdY 93 (1468)
.=|+++|.... +...| +.|..++ .||+|.-+=.. +....++.++-..|-|- .+.+|..+||+|.|.|+++
T Consensus 39 VKv~Llp~~~~~~~~~k---T~v~~~t---~nPvfnE~F~f-~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 39 VRVALLPCSSSTSCLFR---TKALEDQ---DKPVFNEVFRV-PISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred EEEEEccCCCCCCceEE---cCccCCC---CCCccccEEEE-ECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 34567787643 22333 4466666 57888544222 47777888999999883 3557889999999999999
Q ss_pred cccc
Q 041227 94 MNSK 97 (1468)
Q Consensus 94 aeAt 97 (1468)
-...
T Consensus 112 ~~~~ 115 (124)
T cd08680 112 ESSE 115 (124)
T ss_pred cCCC
Confidence 4433
No 181
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=66.44 E-value=2.1e+02 Score=31.56 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhh-hh
Q 041227 1127 SMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISA-TY 1205 (1468)
Q Consensus 1127 ~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSa-t~ 1205 (1468)
.+....+-+++..++..+.-.++.|+--+..+-..-.+.+.-+.+. +=++..+++ .+..+++++..+..+.-. ..
T Consensus 4 ~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~--~a~~~~le~--~~~~~~~~~~~~~~~A~~Al~ 79 (221)
T PF04012_consen 4 KRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARV--MANQKRLER--KLDEAEEEAEKWEKQAELALA 79 (221)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3444556678888888888888877777766666655555433332 223333333 355677777777777643 35
Q ss_pred cccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhh
Q 041227 1206 DEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLR 1251 (1468)
Q Consensus 1206 dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~ 1251 (1468)
.-++.+|-.|+.+.-.+.+..+.++..+.....++...+.++..|.
T Consensus 80 ~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~ 125 (221)
T PF04012_consen 80 AGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELE 125 (221)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999998888888888888777777776666666555444
No 182
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.21 E-value=5e+02 Score=35.84 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=100.7
Q ss_pred HHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhh-hhhhhHH--h
Q 041227 995 QLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGV-QEECEYL--K 1071 (1468)
Q Consensus 995 qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~-Qee~e~L--r 1071 (1468)
..+.+-.-+..|+..+|+...-. ...+-+++.-++..++++..+.++.+.+.++-.+.+ |..++-+ .
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~ 788 (1041)
T KOG0243|consen 719 LTSTFFQTLDNQAEKLTNLFSEA----------NISLSQKLSSFQKKFESIAEDEKQLVEDIKELLSSHDQRNNELLDIA 788 (1041)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHh----------hHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778877777654322 234567788889999998889999999998887653 5555544 2
Q ss_pred hcCc--hhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhh-HHHHHHhhhhhhhhhhhhhhHHHHHHH-------HHhHH
Q 041227 1072 VANP--KLQATAEGLIEECSLLQKSNAELRKQKVNLHEHC-AVLEAQLGESEKGFSSLSMKVEALEEK-------YLSML 1141 (1468)
Q Consensus 1072 ~~N~--kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~-t~lE~kL~eS~~~f~~~~k~Ve~LE~k-------l~s~l 1141 (1468)
..+. -++...-++.+.|+--|+++..++...-..-+.| ++....+..+...=-.++.....+..+ --...
T Consensus 789 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1041)
T KOG0243|consen 789 LQTLRSAVNSRESNLTESVSVMQNLSDDLKTIWQTLGKQNENHHNEVLSAIEEKQQAMKSVLKELLENAESQVDECKEAI 868 (1041)
T ss_pred HHHHHHhhccchhHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2355666889999999999999988776665553 223333332222222222211111111 11223
Q ss_pred HHhhhhhhHhhHHHHHHHHHhhhhcchhhhH
Q 041227 1142 EEISSKEKALNLELDALLHENRKHKDKSVTE 1172 (1468)
Q Consensus 1142 e~issKEk~l~~ELe~l~qE~~~~~ek~~~~ 1172 (1468)
+.|.+.+..-...++.|++.-.++.+++..+
T Consensus 869 ~~lk~~~~~~~~~~~~l~~~~~~~~~k~~~e 899 (1041)
T KOG0243|consen 869 ESLKSLESNHVATLDSLVRGVSEQNKKLQDE 899 (1041)
T ss_pred HHHHHHHhccchHHHHHHhhhhhhhHHhhHH
Confidence 4455556666667777777766666666433
No 183
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.16 E-value=2.3e+02 Score=31.87 Aligned_cols=79 Identities=23% Similarity=0.252 Sum_probs=36.1
Q ss_pred hhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHH
Q 041227 1081 AEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLH 1160 (1468)
Q Consensus 1081 ~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~q 1160 (1468)
.+.+-..+..|......+|++.-..-.++..+-+.|..-+..+......+......+.....++...+..+.. +...+.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~l~ 143 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQ-LQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3334444444444444455554444555555555555544444433333444444444444444444444433 444433
No 184
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.99 E-value=2.1e+02 Score=38.99 Aligned_cols=148 Identities=27% Similarity=0.298 Sum_probs=103.1
Q ss_pred HHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHH
Q 041227 1279 HEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEAS 1358 (1468)
Q Consensus 1279 ~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~s 1358 (1468)
.+++.+.+|.|+- .+++++.|.-|+.+.+-=.|+... +|.-+.|..-+.+|-+.++|+..
T Consensus 211 ~~~l~kdVE~~re-r~~~~~~Ie~l~~k~~~v~y~~~~-------------------~ey~~~k~~~~r~k~~~r~l~k~ 270 (1072)
T KOG0979|consen 211 IDKLEKDVERVRE-RERKKSKIELLEKKKKWVEYKKHD-------------------REYNAYKQAKDRAKKELRKLEKE 270 (1072)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhccccchHhhh-------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555553 457889999999999877777542 44555666666677777777777
Q ss_pred HHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHH
Q 041227 1359 FQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALGSQEAALKNELAQIRRENSQF 1438 (1468)
Q Consensus 1359 l~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~ 1438 (1468)
..=+.--.++|+.+|.-...+||.++.-..+ -.+......+|+...+..+ -++++.+.-+++.-...
T Consensus 271 ~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e---~~~k~~~~~ek~~~~~~~v----------~~~~~~le~lk~~~~~r 337 (1072)
T KOG0979|consen 271 IKPIEDKKEELESEKKETRSKISQKQRELNE---ALAKVQEKFEKLKEIEDEV----------EEKKNKLESLKKAAEKR 337 (1072)
T ss_pred hhhhhhhhhhHHhHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 7777777778888888888888887765444 3445555666666554432 25677777777877788
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041227 1439 QRRIKCLEKEKEDCLSRAQAI 1459 (1468)
Q Consensus 1439 q~ki~~le~E~ee~~~r~q~l 1459 (1468)
|..|........+.+.+++..
T Consensus 338 q~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 338 QKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 888888888888888877654
No 185
>PF15294 Leu_zip: Leucine zipper
Probab=65.74 E-value=2e+02 Score=34.17 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhcc
Q 041227 587 EVDVLKQKVLELEKDCNELTEENLALLFKLKESGK 621 (1468)
Q Consensus 587 Eie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~~ 621 (1468)
|++.||.++..+|..|....+|+=.|=-.|++...
T Consensus 140 EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 140 ENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677999999999999999999888888764
No 186
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=65.22 E-value=14 Score=35.86 Aligned_cols=51 Identities=16% Similarity=0.304 Sum_probs=36.8
Q ss_pred hheeeEE--eccCCCccccceeeechhhhccccCccceeeccCCCCCCCeEEEEee
Q 041227 67 CLIKLVV--TMGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTSLQLKIQ 120 (1468)
Q Consensus 67 KIYKfVV--SmGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGTVLHVtIQ 120 (1468)
....|-| ....++..++|.+.|++++.... .+..+.+||..+ .|.+ |+-|.
T Consensus 61 ~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~~w~~L~~~-~G~~-~~~~~ 113 (116)
T cd08376 61 QILEIEVWDKDTGKKDEFIGRCEIDLSALPRE-QTHSLELELEDG-EGSL-LLLLT 113 (116)
T ss_pred CEEEEEEEECCCCCCCCeEEEEEEeHHHCCCC-CceEEEEEccCC-CcEE-EEEEE
Confidence 3455555 22446789999999999998764 568999999987 4666 65443
No 187
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=65.20 E-value=12 Score=36.42 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=47.3
Q ss_pred cccCccccccccchhcccccCcchhhhhhhheeeEE-e-ccCCCccccceeeechhhhccccCccceeeccC--CCCCCC
Q 041227 38 VRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-T-MGSSRSGIVGEALVNLASYMNSKTSVPLTLPLK--KCNSGT 113 (1468)
Q Consensus 38 VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-S-mGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK--~cnsGT 113 (1468)
-.+-++.|...++=.+. +. .....|-| . .+..+..+||.|.|++++.+.......+..||. +-+.|
T Consensus 45 ~~~~~P~Wne~~~~~v~----~~-----~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G- 114 (124)
T cd04044 45 KDTSNPVWNETKYILVN----SL-----TEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVG- 114 (124)
T ss_pred cCCCCCcceEEEEEEeC----CC-----CCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccce-
Confidence 34558888877754433 11 22344444 2 244467999999999999998766545666664 22334
Q ss_pred eEEEEeeee
Q 041227 114 SLQLKIQCL 122 (1468)
Q Consensus 114 VLHVtIQ~L 122 (1468)
.|||.++.+
T Consensus 115 ~i~~~l~~~ 123 (124)
T cd04044 115 ELNYDLRFF 123 (124)
T ss_pred EEEEEEEeC
Confidence 569988864
No 188
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=64.73 E-value=61 Score=34.40 Aligned_cols=70 Identities=26% Similarity=0.326 Sum_probs=48.1
Q ss_pred hhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhh---HHHHHHHHHH
Q 041227 971 KSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMS---LQDEIRRLEA 1040 (1468)
Q Consensus 971 k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~---Lqdei~r~~~ 1040 (1468)
++.+++.--..+|-....+|+|...|.-++..||++|-.+...-....-.++++.....+ |+..|..|+-
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEe 87 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEE 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHH
Confidence 355566666677777777888888888888888888888777777777777776665444 5555544333
No 189
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.39 E-value=1.5e+02 Score=33.15 Aligned_cols=151 Identities=19% Similarity=0.251 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhh
Q 041227 897 RKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELE 976 (1468)
Q Consensus 897 ~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~ele 976 (1468)
.-...+..+--.+.-++.++..++.....++.+-...+..|.-+ | |...|+++ ...+
T Consensus 42 ~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~Ed----------L------------Ar~Al~~k-~~~~ 98 (219)
T TIGR02977 42 EVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRED----------L------------ARAALIEK-QKAQ 98 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH----------H------------HHHHHHHH-HHHH
Confidence 33444555666778889999999999999999888888877632 1 23334432 3444
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchh------------------hhccchhhhhhHHHHHHHH
Q 041227 977 SSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRL------------------ELENSATHAMSLQDEIRRL 1038 (1468)
Q Consensus 977 s~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l------------------~l~nS~s~~~~Lqdei~r~ 1038 (1468)
..-..|+..+..+..-..+|..+|..|+.++..+..-+..... -..++-.....+.++|.++
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ 178 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDEL 178 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Confidence 4444555556666666666666666666666666555442211 2234444555567777777
Q ss_pred HHHHHHhHH----HHHHHHHHHHHhHhhhhhhhhHHh
Q 041227 1039 EAEMEAQKV----ETKQKLQDMQKRWLGVQEECEYLK 1071 (1468)
Q Consensus 1039 ~~e~e~qk~----~~kqk~qe~q~~wse~Qee~e~Lr 1071 (1468)
++..++.-. .+..++..+.. =+.|.++...||
T Consensus 179 ea~aea~~~~~~~~l~~~l~~l~~-~~~vd~eLa~LK 214 (219)
T TIGR02977 179 EAQAESYDLGRKPSLEDEFAELEA-DDEIERELAALK 214 (219)
T ss_pred HHHHHHhhccCCCCHHHHHHHhcC-CChHHHHHHHHH
Confidence 777666531 14444444432 234555555554
No 190
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.17 E-value=4.6e+02 Score=34.63 Aligned_cols=168 Identities=20% Similarity=0.247 Sum_probs=96.3
Q ss_pred hcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhh
Q 041227 1165 HKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSE 1244 (1468)
Q Consensus 1165 ~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~e 1244 (1468)
+-.++...+.-|-+.|.|+..++.++..+++.|+..|..-.+. +..+=+|--.|= .++|..|-
T Consensus 104 ~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~-----------~~~~~~D~~dls------l~kLeelr 166 (660)
T KOG4302|consen 104 QLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDL-----------PSFLIADESDLS------LEKLEELR 166 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC-----------CcccccCccccc------HHHHHHHH
Confidence 3345556666688889999999999999999998888766222 222222222111 16677777
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHH-hhh
Q 041227 1245 SNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEE-ISS 1323 (1468)
Q Consensus 1245 s~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE-~s~ 1323 (1468)
++|..||.|+-..++.+.+=..+-+-..+.|-.|...+. .++-.+-.+.-++-+ -.+..+-|.|.+.|-+ ...
T Consensus 167 ~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~v---t~~~~sL~~~~~~~~---~~is~etl~~L~~~v~~l~~ 240 (660)
T KOG4302|consen 167 EHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTV---TDVEPSLVDHDGEQS---RSISDETLDRLDKMVKKLKE 240 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch---hhhhhhhhhccCccc---ccCCHHHHHHHHHHHHHHHH
Confidence 778888888877777777666777777777766654332 222222222222111 2333344444443321 111
Q ss_pred hH-HHHHHHhhhhhHHHHHHHHHHHHhhhhHHH
Q 041227 1324 LK-VQLERTAQFQDEVLSLKKLLNEAKFENERL 1355 (1468)
Q Consensus 1324 Lk-vQlqk~~~lqdEv~~lk~sL~~~kfek~rL 1355 (1468)
-| .-.||+..+...++.|=+-|+...-+..+.
T Consensus 241 ~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f 273 (660)
T KOG4302|consen 241 EKKQRLQKLQDLRTKLLELWNLLDTSDEERQRF 273 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 11 224566677777777766666555444444
No 191
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.74 E-value=2.2e+02 Score=33.61 Aligned_cols=104 Identities=18% Similarity=0.238 Sum_probs=63.8
Q ss_pred hhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhch
Q 041227 1287 EDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDY 1366 (1468)
Q Consensus 1287 e~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~ 1366 (1468)
++.+++.+.|+.+.|.+=..=+++.| .-++=...++.-=+.+..-+-.=|-+=|.-|..-+-.+++|++.-..+-..+
T Consensus 94 ~~I~~r~~~l~~raRAmq~nG~~t~Y--idvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~ 171 (265)
T COG3883 94 ENIVERQELLKKRARAMQVNGTATSY--IDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKL 171 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHH--HHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776666666665 2344455555555556555555555556666666666666666666666666
Q ss_pred HHHHHHHhhHHHhhhhHHHHHhhhhh
Q 041227 1367 EELKAERISFMQKISTSQQVVSELDD 1392 (1468)
Q Consensus 1367 eeLkaek~~~~~kis~~q~~~seled 1392 (1468)
+.|.+-...|..++-.|..-.+++++
T Consensus 172 e~l~al~~e~e~~~~~L~~qk~e~~~ 197 (265)
T COG3883 172 ETLVALQNELETQLNSLNSQKAEKNA 197 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555555543
No 192
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=63.40 E-value=3.4e+02 Score=34.47 Aligned_cols=139 Identities=18% Similarity=0.268 Sum_probs=81.8
Q ss_pred HHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhh-----hhhHhh----HH
Q 041227 1084 LIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISS-----KEKALN----LE 1154 (1468)
Q Consensus 1084 lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~iss-----KEk~l~----~E 1154 (1468)
+.++|..+......++.+.-.++.+.+.+++.|..-++.+.+-...++..+.+|+--.+.+|. |-+.|. .-
T Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~ 137 (475)
T PRK10361 58 WRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQS 137 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555566666666666666666666555555555555555554443 222222 34
Q ss_pred HHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHH---hhhh--------------hhcccccchhHHHH
Q 041227 1155 LDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTE---QISA--------------TYDEKDGTHSEAVL 1217 (1468)
Q Consensus 1155 Le~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~---QiSa--------------t~dere~~~s~av~ 1217 (1468)
|++||.=-+++-++|..- ++.+|.+.+-+-..|..+|.+|.. +|+. |++-=.-+.+..|+
T Consensus 138 l~~ll~Pl~e~l~~f~~~---v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerIL 214 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQ---VQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVL 214 (475)
T ss_pred HHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHH
Confidence 677777777777777655 778887776666666666655532 2222 34444456677777
Q ss_pred HHhhhhhh
Q 041227 1218 EVSHLRAD 1225 (1468)
Q Consensus 1218 EvS~LrAd 1225 (1468)
|.|.|+.+
T Consensus 215 E~sGL~~~ 222 (475)
T PRK10361 215 EASGLREG 222 (475)
T ss_pred HHhCCCcC
Confidence 77777765
No 193
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=63.30 E-value=1.1e+02 Score=39.56 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=94.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-----hhHHHHHhhhHHhhhHHHHHHHHHHHh
Q 041227 282 SSKDLLEAAEVKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQ-----ASLEMELSKSHAQCDGLKQEIEWLKKL 356 (1468)
Q Consensus 282 SSkd~LeaAE~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrg-----qdLs~EvS~Lk~ERD~LK~E~EqLKss 356 (1468)
|-+.+|+.+...+..+=++...+...+.++...|+.+-+++-+....+ -.+.+|+.++++.++.|+.+|..|+..
T Consensus 301 sv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~ 380 (632)
T PF14817_consen 301 SVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEA 380 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778999999999999999999999999999999999887765443 256789999999999999999999876
Q ss_pred hhhHhhhhhhhccccccccChhHHHHHHHHHHhhhhhhchhHHHhHhhhhhhhHHHHH
Q 041227 357 AKESEVQSTATENLKFQARDTDKKINELEDEIKFQKESNANLAIQLNKTQESNIELIS 414 (1468)
Q Consensus 357 ~k~~~~~q~~~~~lk~e~eD~~~lleELrdEL~yEKE~NaNL~LQLqKTQESN~ELVl 414 (1468)
-..-......-..-+=.+.|.+.++.|..+=+.-.=--|.+++.+|.+.+...-++|.
T Consensus 381 ~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~ 438 (632)
T PF14817_consen 381 AAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFVQ 438 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHHh
Confidence 6542222111111111244566666666665554444677777777777777766654
No 194
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=62.78 E-value=17 Score=36.23 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=36.1
Q ss_pred hheeeEE-eccCC--CccccceeeechhhhccccCccceeeccCCC-----CCCCeEEEEeee
Q 041227 67 CLIKLVV-TMGSS--RSGIVGEALVNLASYMNSKTSVPLTLPLKKC-----NSGTSLQLKIQC 121 (1468)
Q Consensus 67 KIYKfVV-SmGSS--RSgiLGEasINLAdYaeAtkP~sVSLPLK~c-----nsGTVLHVtIQ~ 121 (1468)
....|.| .-+.. +..+||++.|.++++..-..+.+.-+||.+= .+| -|||+|+.
T Consensus 64 ~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G-~l~l~~~~ 125 (127)
T cd04022 64 LVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRG-EIGLKVYI 125 (127)
T ss_pred CeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccE-EEEEEEEE
Confidence 3445544 44332 7899999999999998444556677888532 244 77887763
No 195
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.72 E-value=53 Score=36.91 Aligned_cols=73 Identities=8% Similarity=0.095 Sum_probs=40.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHH
Q 041227 282 SSKDLLEAAEVKIEELHAEARMWEQNARKLMTDLE----KVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLK 354 (1468)
Q Consensus 282 SSkd~LeaAE~tIEeLK~E~~~LeR~Adkl~~ELQ----tLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLK 354 (1468)
+.+..|+..+..+.+|+.++.......+....+++ ...+++.+=-..-+.|..++..++.|.+.|+.+.+.++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999988876655443333333 22333222122233444444444444444444444444
No 196
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.68 E-value=4.9e+02 Score=34.49 Aligned_cols=431 Identities=19% Similarity=0.244 Sum_probs=225.9
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhh-hhhHHHHHHHHHHHH----HHhHHHHHHHHHHHHHh
Q 041227 985 HLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATH-AMSLQDEIRRLEAEM----EAQKVETKQKLQDMQKR 1059 (1468)
Q Consensus 985 hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~-~~~Lqdei~r~~~e~----e~qk~~~kqk~qe~q~~ 1059 (1468)
|=+.=..+|...+.++=.++-.|..|.+...-.+|++.-.-+. +.+...++.|.+... .-| .-+|---+.+|++
T Consensus 49 ~~~~~~s~n~~~~s~~~~~~~~l~~Lqns~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q-~a~~~~e~~lq~q 127 (716)
T KOG4593|consen 49 MQSEERSENITSKSLLMQLEDELMQLQNSHKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQ-EALKGQEEKLQEQ 127 (716)
T ss_pred CCchhhhccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4455677889999999999998888888888888877655543 455667777666421 111 3344445567777
Q ss_pred HhhhhhhhhHHhhcCchhhhhhhhHHHHhh-----------hHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhh
Q 041227 1060 WLGVQEECEYLKVANPKLQATAEGLIEECS-----------LLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSM 1128 (1468)
Q Consensus 1060 wse~Qee~e~Lr~~N~kLQaT~e~lieec~-----------slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k 1128 (1468)
.-+.+.+|......-.+|--+.+.=+-|.. .+|..--..++.---+|+..+-++.+++-....--+-|+
T Consensus 128 ~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q 207 (716)
T KOG4593|consen 128 LERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQ 207 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777787777766555555444443332222 223333333333344666677777777776666666666
Q ss_pred hHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhccc
Q 041227 1129 KVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEK 1208 (1468)
Q Consensus 1129 ~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~der 1208 (1468)
.|-.+.+.+.+.-. ....+++...=+-.+.+... +|.|..+...+.+.|.+..+.++.-++.--+-+
T Consensus 208 ~~~~~~~~l~e~~~-----~~qq~a~~~~ql~~~~ele~--------i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~ 274 (716)
T KOG4593|consen 208 KIQELQASLEERAD-----HEQQNAELEQQLSLSEELEA--------INKNMKDQLQELEELERALSQLREELATLRENR 274 (716)
T ss_pred HHHHHHHHHHHHHH-----HHHHHhhHHHHHHhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66655555543211 11222333222222222222 566777777788888777777776655433222
Q ss_pred ccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhH---HH---HHHHHHHHHHHHhhhHHHHHhhHHHH
Q 041227 1209 DGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMES---QT---KIQQLKSELAAARQNQEVLMADHEKL 1282 (1468)
Q Consensus 1209 e~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es---~~---ki~~l~~~L~askqn~emL~~d~ek~ 1282 (1468)
. =|-+|-+.+-.|++.+- ++..|.+++-+|.-|- ++ +-.++-++++ =+-+-..+|
T Consensus 275 ~--------tv~~LqeE~e~Lqskl~----~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~-------~~~~~~~~~ 335 (716)
T KOG4593|consen 275 E--------TVGLLQEELEGLQSKLG----RLEKLQSTLLGLELENEDLLTKLQRWERADQEMG-------SLRTPEDLM 335 (716)
T ss_pred h--------hhHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh-------ccCCHHHHH
Confidence 1 13344444444443322 2233334433333221 11 1122222222 122222333
Q ss_pred HHHHhhhCcchHhhhhhhhhhccccc-cchHHHHH---------HHHHhh-------hhHHHHHHHhhhhhHHHHHHHHH
Q 041227 1283 LNLLEDVKPNEEKFRGTIRGLELKLK-ASDYERLQ---------LTEEIS-------SLKVQLERTAQFQDEVLSLKKLL 1345 (1468)
Q Consensus 1283 ~~lle~~kSneeklk~t~~~LElklk-~s~yErqq---------~~eE~s-------~LkvQlqk~~~lqdEv~~lk~sL 1345 (1468)
-+++. --|+.-.+.-.++++..-.. .....+++ ++++-+ .|+.-+|+.+.+-..+..|...+
T Consensus 336 ~~~~~-e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~ 414 (716)
T KOG4593|consen 336 EKLVN-EQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAI 414 (716)
T ss_pred HHHHH-HHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 23444445555555444433 22222211 111111 24455667777777777777777
Q ss_pred HHHhhhhHHHHHHHHhhhhchHHHHHH-----HhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHHhhhhh
Q 041227 1346 NEAKFENERLEASFQILSGDYEELKAE-----RISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALGSQ 1420 (1468)
Q Consensus 1346 ~~~kfek~rLe~sl~~~S~e~eeLkae-----k~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a~ea~~~~ 1420 (1468)
-..+--..||..-+-.++.+.+.+|+= |..+.--.| +.++-.++..-|+....++-.+..|..+|.-++-.-.
T Consensus 415 ~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s-~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~- 492 (716)
T KOG4593|consen 415 LGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEAS-MEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLL- 492 (716)
T ss_pred hhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 777777777777777777777776642 222222222 4455555555666666777777777777764432211
Q ss_pred hHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 041227 1421 EAALKNELAQIRRENSQFQRRIKCLEKEKEDCL 1453 (1468)
Q Consensus 1421 ~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~ 1453 (1468)
-++..+++.+ ----+|-+++..|++|+.-++
T Consensus 493 ~qr~e~~~~~--e~i~~~~ke~~~Le~En~rLr 523 (716)
T KOG4593|consen 493 FQREESELLR--EKIEQYLKELELLEEENDRLR 523 (716)
T ss_pred HHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHH
Confidence 1222333321 113457777788888876555
No 197
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=62.40 E-value=1.8e+02 Score=37.68 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHh
Q 041227 1256 TKIQQLKSELAAARQNQEVLMADHEKLLNLLE 1287 (1468)
Q Consensus 1256 ~ki~~l~~~L~askqn~emL~~d~ek~~~lle 1287 (1468)
.++.++...|++.+.+.....+-...+...+.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777776665555555555554444
No 198
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=62.36 E-value=17 Score=38.18 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=38.4
Q ss_pred eeeEE-eccCCCccccceeeechhhhccccCccceeecc-----CCCCCCCeEEEEeee
Q 041227 69 IKLVV-TMGSSRSGIVGEALVNLASYMNSKTSVPLTLPL-----KKCNSGTSLQLKIQC 121 (1468)
Q Consensus 69 YKfVV-SmGSSRSgiLGEasINLAdYaeAtkP~sVSLPL-----K~cnsGTVLHVtIQ~ 121 (1468)
..|.| .-......++|.|+|.+++... ..+....+|| +.+..|+-|||.+|.
T Consensus 100 l~~~V~d~d~~~~~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 100 VEFTVKDNDVVGAQLIGRAYIPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred EEEEEEeCCCcCCcEEEEEEEEhHHccC-CCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 34444 3333346899999999999875 4567788998 456689999999984
No 199
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=61.50 E-value=68 Score=33.20 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=62.6
Q ss_pred HHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhh
Q 041227 1050 KQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMK 1129 (1468)
Q Consensus 1050 kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~ 1129 (1468)
....-++|.++.-.|...|-.|.+.-.| +.+-..|.+.+.-|+.|+..+.-+|..|++++.+..+...+.-..
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL-------~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~a 80 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGEL-------AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQA 80 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666667777666555 556666788888888888888888888888888887777773333
Q ss_pred HHHHHHHHHhHHHHhhhhhhHh
Q 041227 1130 VEALEEKYLSMLEEISSKEKAL 1151 (1468)
Q Consensus 1130 Ve~LE~kl~s~le~issKEk~l 1151 (1468)
--.|+..++-...|++--|-.|
T Consensus 81 k~~l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 81 KLELESRLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH
Confidence 3367777777777777655544
No 200
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=60.63 E-value=12 Score=38.14 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=42.1
Q ss_pred EEEEEEcccCcccccccccccccCccccccccchhc-ccccCcchhhhhhhheeeEE-ecc-CCCccccceeeechhhhc
Q 041227 18 VVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESI-WIPQDNALKEIEECLIKLVV-TMG-SSRSGIVGEALVNLASYM 94 (1468)
Q Consensus 18 fVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETv-kl~qD~KTkk~~EKIYKfVV-SmG-SSRSgiLGEasINLAdYa 94 (1468)
-|++.|... +.. .-|+.|..++| +|+|--+ .|. ..-.+...+...|-| ..| .++.-+||++.|.|+++.
T Consensus 42 kv~llp~~~-~~~--k~kT~v~~~t~---nPvfNE~F~f~--v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 42 KVCLLPDKS-HNS--KRKTAVKKGTV---NPVFNETLKYV--VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred EEEEEeCCc-ccc--eeecccccCCC---CCccceEEEEE--cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc
Confidence 345667552 222 23556777776 4555332 332 333456666666666 554 367889999999999983
No 201
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=60.59 E-value=3.6e+02 Score=33.50 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhh
Q 041227 285 DLLEAAEVKIEELHAEARMWEQNARKLMT----DLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLA 357 (1468)
Q Consensus 285 d~LeaAE~tIEeLK~E~~~LeR~Adkl~~----ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~ 357 (1468)
+.|...-.++.++|.....|+..-+.|.. |++-+..-+-.|--|..-|+..|..+. +.-..|+..||.-+
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~---elHq~Ei~~LKqeL 285 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLT---ELHQNEIYNLKQEL 285 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44566666667777777777766666664 566666667777777777777776663 23344555555444
No 202
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=59.95 E-value=71 Score=36.13 Aligned_cols=109 Identities=21% Similarity=0.303 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hhhhh-H-------------HHHHhhhHHhhhHHHHHH
Q 041227 287 LEAAEVKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQL--ARQAS-L-------------EMELSKSHAQCDGLKQEI 350 (1468)
Q Consensus 287 LeaAE~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEs--Krgqd-L-------------s~EvS~Lk~ERD~LK~E~ 350 (1468)
|+..+..+...+.|+..|......++.|+..||..++.-. +.... + ...+..|+.+-+.|+.|+
T Consensus 68 LE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL 147 (202)
T PF06818_consen 68 LEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAEL 147 (202)
T ss_pred HHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHH
Confidence 5788889999999999999999999999999999999841 00000 0 112333444444444444
Q ss_pred HHHHHhhhhHhhhhhhhccccccccChhHHHHHHHHHHhhhhhhchhHHHhHhh
Q 041227 351 EWLKKLAKESEVQSTATENLKFQARDTDKKINELEDEIKFQKESNANLAIQLNK 404 (1468)
Q Consensus 351 EqLKss~k~~~~~q~~~~~lk~e~eD~~~lleELrdEL~yEKE~NaNL~LQLqK 404 (1468)
-..+....+ -...|+.+ -..-.+|=...|.|+|.+-.|---=.+|
T Consensus 148 ~~er~~~e~--------q~~~Fe~E-R~~W~eEKekVi~YQkQLQ~nYvqMy~r 192 (202)
T PF06818_consen 148 QRERQRREE--------QRSSFEQE-RRTWQEEKEKVIRYQKQLQQNYVQMYQR 192 (202)
T ss_pred HHHHHhHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322221 11122222 1234688888999999887775433333
No 203
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.90 E-value=25 Score=38.36 Aligned_cols=45 Identities=33% Similarity=0.485 Sum_probs=40.7
Q ss_pred hhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1420 QEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEELK 1464 (1468)
Q Consensus 1420 ~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~elk 1464 (1468)
+...+.+|..++++++.+++.++..|+.|++.+..+...++++.+
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788999999999999999999999999999999999998864
No 204
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=59.60 E-value=39 Score=36.24 Aligned_cols=114 Identities=18% Similarity=0.293 Sum_probs=70.2
Q ss_pred cccCCcc-c---eeEEEE---EEcccCcccccccccccccCcc--ccccccchhcccccCcch--hhhhhhheeeEE-ec
Q 041227 8 LQVPKGW-D---KLVVSV---VLVETGKTIAKSSKAPVRNGNC--RWIETFSESIWIPQDNAL--KEIEECLIKLVV-TM 75 (1468)
Q Consensus 8 TQVP~Gw-D---kLfVSi---Vp~DtGKtTAKteKA~VRnG~C--rWedPIyETvkl~qD~KT--kk~~EKIYKfVV-Sm 75 (1468)
...|.|| + --||-| .| .-|...+|| .|..+++ .|...++=.| .+..++ +.+..+-.+|-| ..
T Consensus 14 ~~l~~~~~~~~~DpYVk~~l~~p-~~~~~k~KT---~v~k~TlnPvfNE~f~f~I--~~~~~~~~R~l~~~~L~~~V~d~ 87 (155)
T cd08690 14 IPLPSGWNPKDLDTYVKFEFPYP-NEEPQSGKT---STIKDTNSPEYNESFKLNI--NRKHRSFQRVFKRHGLKFEVYHK 87 (155)
T ss_pred cccCCCcCCCCCCeEEEEEEecC-CCCCceeec---CcccCCCCCcccceEEEEe--ccccchhhhhccCCcEEEEEEeC
Confidence 3356666 2 245544 24 235555554 3444443 4665554322 211111 134466678877 55
Q ss_pred cC--CCccccceeeechhhhccccCccceeeccC--CCCCCCeEEEEeeeecCCCCC
Q 041227 76 GS--SRSGIVGEALVNLASYMNSKTSVPLTLPLK--KCNSGTSLQLKIQCLTPRAKI 128 (1468)
Q Consensus 76 GS--SRSgiLGEasINLAdYaeAtkP~sVSLPLK--~cnsGTVLHVtIQ~Lt~kt~~ 128 (1468)
|. .+-.++|+|.|+|+.+..... ..-++||. +-..|+=|||.|..-.|-++.
T Consensus 88 ~~f~~~D~~iG~~~i~L~~l~~~~~-~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~ 143 (155)
T cd08690 88 GGFLRSDKLLGTAQVKLEPLETKCE-IHESVDLMDGRKATGGKLEVKVRLREPLTGK 143 (155)
T ss_pred CCcccCCCeeEEEEEEcccccccCc-ceEEEEhhhCCCCcCCEEEEEEEecCCCccc
Confidence 43 478999999999999977765 56688885 334899999999998886664
No 205
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=59.54 E-value=25 Score=34.66 Aligned_cols=84 Identities=26% Similarity=0.311 Sum_probs=52.1
Q ss_pred CcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-ec-cCCCccccceeeechhhhccccCccceee
Q 041227 27 GKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTL 104 (1468)
Q Consensus 27 GKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSL 104 (1468)
|+...||. ..-++-+..|...++=.+ .++ ....+|-| .- ..++..++|.|.|++++... -.|..+.+
T Consensus 31 ~~~~~kT~-~~~~t~nP~Wne~f~f~v---~~~------~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~-~~~~~~~~ 99 (121)
T cd04042 31 GKTVYKSK-TIYKNLNPVWDEKFTLPI---EDV------TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLEL-NKPTEVKL 99 (121)
T ss_pred CEEEEEee-eccCCCCCccceeEEEEe---cCC------CCeEEEEEEeCCCCCCCcceEEEEEEHHHcCC-CCCeEEEE
Confidence 44555553 334455667765543222 121 23456655 22 44578999999999998874 46688999
Q ss_pred ccCCCCC---CCeEEEEeee
Q 041227 105 PLKKCNS---GTSLQLKIQC 121 (1468)
Q Consensus 105 PLK~cns---GTVLHVtIQ~ 121 (1468)
||.+-+. ...|||.+.+
T Consensus 100 ~L~~~~~~~~~G~l~l~~~~ 119 (121)
T cd04042 100 KLEDPNSDEDLGYISLVVTL 119 (121)
T ss_pred ECCCCCCccCceEEEEEEEE
Confidence 9964443 4677887754
No 206
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=59.22 E-value=3.4e+02 Score=34.39 Aligned_cols=128 Identities=18% Similarity=0.206 Sum_probs=73.5
Q ss_pred hhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhh
Q 041227 1220 SHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGT 1299 (1468)
Q Consensus 1220 S~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t 1299 (1468)
+.+++..+.|++.++..+....--...|...+..-....+.|+...=..+. ..+...+.+.|-.||.-++-.-+.|+..
T Consensus 77 ~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~-~~f~~~~~~~l~~ll~Pl~e~l~~f~~~ 155 (475)
T PRK10361 77 TSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSN-RRVDEQNRQSLNSLLSPLREQLDGFRRQ 155 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444555444444333333334444444455555566655433333 3566677788889999999999999999
Q ss_pred hhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHH
Q 041227 1300 IRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENER 1354 (1468)
Q Consensus 1300 ~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~r 1354 (1468)
|.+++-. ..=+|-.+.++|..|.-+- ..+..|-..|-+.|..-+--.|.
T Consensus 156 v~~~~~~---~~~~~~~L~~qi~~L~~~n---~~i~~ea~nLt~ALkgd~K~rG~ 204 (475)
T PRK10361 156 VQDSFGK---EAQERHTLAHEIRNLQQLN---AQMAQEAINLTRALKGDNKTQGN 204 (475)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCCcCcc
Confidence 9887643 2234455555555554332 34455666788888664333343
No 207
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=58.97 E-value=4.5e+02 Score=32.81 Aligned_cols=234 Identities=28% Similarity=0.300 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhh-hHHHHhhhHHHhHHHHHHHHhhhhhh
Q 041227 1030 SLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAE-GLIEECSLLQKSNAELRKQKVNLHEH 1108 (1468)
Q Consensus 1030 ~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e-~lieec~slQ~~~~eLr~qklelh~~ 1108 (1468)
-|..+|..+++.|++=....+-- |--. -.|++. | -+-+--+|||.| ++.+==.+-|+-..||.+|-
T Consensus 295 ~L~k~vQ~L~AQle~~R~q~e~~----q~~~-~s~~d~-~-~~~~~~~qatCERgfAaMEetHQkkiEdLQRqH------ 361 (593)
T KOG4807|consen 295 ALEKEVQALRAQLEAWRLQGEAP----QSAL-RSQEDG-H-IPPGYISQATCERGFAAMEETHQKKIEDLQRQH------ 361 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhccCc----hhhH-hhhhhc-c-CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------
Confidence 45666666666666655544211 1000 011111 1 112235688888 55555567788888887662
Q ss_pred hHHHHHHhhhhhhhhh--hhhhhHHHHHHHHHhHHHHhh---hhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhh
Q 041227 1109 CAVLEAQLGESEKGFS--SLSMKVEALEEKYLSMLEEIS---SKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEK 1183 (1468)
Q Consensus 1109 ~t~lE~kL~eS~~~f~--~~~k~Ve~LE~kl~s~le~is---sKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek 1183 (1468)
-..|| +|++-+.+.. +-.-++..+|+--.--.|++. +|=+++++..++| -+-|+|
T Consensus 362 qRELe-kLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaL------------------RrQyle- 421 (593)
T KOG4807|consen 362 QRELE-KLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEAL------------------RRQYLE- 421 (593)
T ss_pred HHHHH-HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHH------------------HHHHHH-
Confidence 22332 5555554432 222334444433332233322 3555666666654 333443
Q ss_pred HHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHH
Q 041227 1184 TVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKS 1263 (1468)
Q Consensus 1184 ~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~ 1263 (1468)
+|+.+|||++-|+.|-|.-|=|-.+++-.+--|--.||.=- ++ +.|-..--+.|.+
T Consensus 422 --elqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQ-------rE---------------nQELnaHNQELnn 477 (593)
T KOG4807|consen 422 --ELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQ-------RE---------------NQELNAHNQELNN 477 (593)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh---------------hHHHHHHHHHHhh
Confidence 78999999999999999998776555433222222222100 00 0011111122222
Q ss_pred HHHHHhhhHHHHHhhHHHHHHHHhhhC---cchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHH
Q 041227 1264 ELAAARQNQEVLMADHEKLLNLLEDVK---PNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLER 1330 (1468)
Q Consensus 1264 ~L~askqn~emL~~d~ek~~~lle~~k---Sneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk 1330 (1468)
-|.+....++.||..-- -.-..--+...+||+-|++-+-|-|-+..||+.||-.||-
T Consensus 478 ----------RLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 478 ----------RLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQT 537 (593)
T ss_pred ----------HHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 24444555565553210 0001112345789999999999999999999999877763
No 208
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.01 E-value=6.2e+02 Score=34.16 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=87.1
Q ss_pred hHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHH
Q 041227 1293 EEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAE 1372 (1468)
Q Consensus 1293 eeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkae 1372 (1468)
||--|+.|-.-|.--+--+--||+-+|-+.--.++.|| ..-|..|+.++.-+...++|.+-|-.-+|-||+-..+....
T Consensus 388 EEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk-~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~ 466 (1118)
T KOG1029|consen 388 EEERKKEIERREAAREELEKQRQLEWERARRQEMLNQK-NREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD 466 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec
Confidence 33444444444444333333455667777666677766 45688899999999999999888888888888866555443
Q ss_pred HhhHHHhhhhH----HHHHhhhhhhhhhhhHHHHHHHhh-------cCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHH
Q 041227 1373 RISFMQKISTS----QQVVSELDDCKRKKVALQEKVLRL-------EGDLAAIEALGSQEAALKNELAQIRRENSQFQR 1440 (1468)
Q Consensus 1373 k~~~~~kis~~----q~~~seled~k~sk~sleeKl~rl-------e~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ 1440 (1468)
+.---.-|-.| ....+|+.+.++-.-.+++||.+| ..-+.++-+.+..+.--+.+|.+.+|.-....+
T Consensus 467 ~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq 545 (1118)
T KOG1029|consen 467 ITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQ 545 (1118)
T ss_pred cchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHH
Confidence 32222222221 223455555555555666666654 344555556666565556666666665443333
No 209
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.88 E-value=33 Score=32.16 Aligned_cols=53 Identities=21% Similarity=0.436 Sum_probs=42.4
Q ss_pred hcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041227 1407 LEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEELKQT 1466 (1468)
Q Consensus 1407 le~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~elk~~ 1466 (1468)
|+...-|+.+++ .||.++|-+|-.+..+.+.-+.-|.++...+..|++++...
T Consensus 6 L~~EirakQ~~~-------eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 6 LEAEIRAKQAIQ-------EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555444 47889999999999999999999999999999999988654
No 210
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=57.72 E-value=18 Score=38.29 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=50.1
Q ss_pred ccccccCC----cc-ce-eEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-ec-c
Q 041227 5 IWELQVPK----GW-DK-LVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-G 76 (1468)
Q Consensus 5 FhATQVP~----Gw-Dk-LfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-G 76 (1468)
.+|..+|. |. |. .-|++.|...|....||. ..-++- +|+|..+-........++.+....|.| .- .
T Consensus 34 i~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~-vi~~t~-----nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~ 107 (162)
T cd04020 34 KEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTP-VVKKSV-----NPVWNHTFVYDGVSPEDLSQACLELTVWDHDK 107 (162)
T ss_pred EeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCC-ccCCCC-----CCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC
Confidence 56777773 23 33 334567777777777663 222333 455543333322223345666777877 22 3
Q ss_pred CCCccccceeeechhhhcc
Q 041227 77 SSRSGIVGEALVNLASYMN 95 (1468)
Q Consensus 77 SSRSgiLGEasINLAdYae 95 (1468)
.++..+||++.|++++...
T Consensus 108 ~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 108 LSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCCCceEEEEEEeCCcccc
Confidence 3568999999999999763
No 211
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.54 E-value=41 Score=35.82 Aligned_cols=68 Identities=18% Similarity=0.325 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhh
Q 041227 285 DLLEAAEVKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLA 357 (1468)
Q Consensus 285 d~LeaAE~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~ 357 (1468)
+-+.+.+..|..|+.++..+......+..+|..|++.... .+|...+..|+.|+..|..-++.|++..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3356666789999999999999999999999999988876 4788889999999998888888888633
No 212
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=57.48 E-value=16 Score=36.73 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=46.9
Q ss_pred eEEEEEEcccCcccccccccccccC--ccccccccchhcccccCcchhhhhhhheeeEE-ec-cCCCccccceeeechhh
Q 041227 17 LVVSVVLVETGKTIAKSSKAPVRNG--NCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-GSSRSGIVGEALVNLAS 92 (1468)
Q Consensus 17 LfVSiVp~DtGKtTAKteKA~VRnG--~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-GSSRSgiLGEasINLAd 92 (1468)
.-|+++|.+......|| .|..+ +..|...+.=.| ...++.+....|-| .. +.++..+||++.|.+++
T Consensus 41 Vkv~l~p~~~~~~~~kT---~v~~~t~nP~wnE~f~f~i------~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~ 111 (125)
T cd04029 41 VKTYLLPDKSRQSKRKT---SIKRNTTNPVYNETLKYSI------SHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDS 111 (125)
T ss_pred EEEEEEcCCccccceEe---eeeeCCCCCcccceEEEEC------CHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCc
Confidence 33467787653333344 24444 445665442112 22335565666777 33 34678899999999999
Q ss_pred hccccCccceeeccC
Q 041227 93 YMNSKTSVPLTLPLK 107 (1468)
Q Consensus 93 YaeAtkP~sVSLPLK 107 (1468)
|.-. .....-+||+
T Consensus 112 ~~~~-~~~~~w~~l~ 125 (125)
T cd04029 112 WNFD-SQHEECLPLH 125 (125)
T ss_pred cccc-CCcccEEECc
Confidence 8655 3366666663
No 213
>PRK10884 SH3 domain-containing protein; Provisional
Probab=56.57 E-value=56 Score=36.69 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=14.9
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHHHhhhhh
Q 041227 1091 LQKSNAELRKQKVNLHEHCAVLEAQLGESE 1120 (1468)
Q Consensus 1091 lQ~~~~eLr~qklelh~~~t~lE~kL~eS~ 1120 (1468)
|...|..|+.+-..+......|+++++.-+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555554444
No 214
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=56.35 E-value=1.7e+02 Score=34.88 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHH----------HHhhhHHhhhHHHHHHHHHHHh
Q 041227 287 LEAAEVKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEM----------ELSKSHAQCDGLKQEIEWLKKL 356 (1468)
Q Consensus 287 LeaAE~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~----------EvS~Lk~ERD~LK~E~EqLKss 356 (1468)
|+.-|.+|-+||+-++--++.-..=+.|+..||.|++. .+.|--. =+..+|.|.-.||+=||-+|++
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~R---MrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLAR---MREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999988777777778899999999863 2222211 1344455555555555555555
Q ss_pred hh
Q 041227 357 AK 358 (1468)
Q Consensus 357 ~k 358 (1468)
+.
T Consensus 140 L~ 141 (305)
T PF15290_consen 140 LA 141 (305)
T ss_pred hc
Confidence 53
No 215
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=56.28 E-value=33 Score=36.05 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=53.0
Q ss_pred cCcccccccccccc-cCccccccccchhcccccCcchhhhhhhheeeEE--eccCCCccccceeeechhhhcc---ccCc
Q 041227 26 TGKTIAKSSKAPVR-NGNCRWIETFSESIWIPQDNALKEIEECLIKLVV--TMGSSRSGIVGEALVNLASYMN---SKTS 99 (1468)
Q Consensus 26 tGKtTAKteKA~VR-nG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV--SmGSSRSgiLGEasINLAdYae---AtkP 99 (1468)
.|....||. ...+ +-+..|...+.=. +.++.. + ...|.| .-+.++..+||.+.|++.++.. ...+
T Consensus 29 l~~~~~kTk-~~~~~t~nP~WNE~F~f~---v~~~~~----~-~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~ 99 (150)
T cd04019 29 LGNQVLRTR-PSQTRNGNPSWNEELMFV---AAEPFE----D-HLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPV 99 (150)
T ss_pred ECCEEeeeE-eccCCCCCCcccCcEEEE---ecCccC----C-eEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCcc
Confidence 354444433 2222 3567777654221 223321 2 344444 3355678999999999999864 3455
Q ss_pred cceeeccCCC----------CCCCeEEEEeeeec
Q 041227 100 VPLTLPLKKC----------NSGTSLQLKIQCLT 123 (1468)
Q Consensus 100 ~sVSLPLK~c----------nsGTVLHVtIQ~Lt 123 (1468)
...-+||.+. .++.-|||.|+.-+
T Consensus 100 ~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 100 PSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 6777899764 34588999887653
No 216
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=55.54 E-value=5.4e+02 Score=32.76 Aligned_cols=212 Identities=19% Similarity=0.226 Sum_probs=115.8
Q ss_pred HHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhccccccc
Q 041227 883 EKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQV 962 (1468)
Q Consensus 883 ~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~v 962 (1468)
.-..-|.+||.++--++--|-.|+++..=||++|-+||--.+.- |
T Consensus 314 aLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQ----------------------------------q- 358 (527)
T PF15066_consen 314 ALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQ----------------------------------Q- 358 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhh----------------------------------h-
Confidence 33445779999999999999999999999999999996543311 0
Q ss_pred chhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHH
Q 041227 963 SVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEM 1042 (1468)
Q Consensus 963 s~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~ 1042 (1468)
.+-.-|..|+.-+..|.+++=...|+--+-.+...|||.-.
T Consensus 359 --------------------------------vfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~l------- 399 (527)
T PF15066_consen 359 --------------------------------VFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEAL------- 399 (527)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHH-------
Confidence 01223334444444555555444444444444444444322
Q ss_pred HHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhh-hhhHHHHHHhhhhhh
Q 041227 1043 EAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLH-EHCAVLEAQLGESEK 1121 (1468)
Q Consensus 1043 e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh-~~~t~lE~kL~eS~~ 1121 (1468)
-..|+++-|..-+.+.| |-...-++---.-|. .|.|.+.+|= .|--
T Consensus 400 -----------a~tqk~LqEsr~eKetL---------------------qlelkK~k~nyv~LQEry~~eiQqKn-ksvs 446 (527)
T PF15066_consen 400 -----------ANTQKHLQESRNEKETL---------------------QLELKKIKANYVHLQERYMTEIQQKN-KSVS 446 (527)
T ss_pred -----------HHHHHHHHHHHhhHHHH---------------------HHHHHHHhhhHHHHHHHHHHHHHHhh-hHHH
Confidence 23444443333333322 111111111111121 2344444442 2333
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhh
Q 041227 1122 GFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQI 1201 (1468)
Q Consensus 1122 ~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~Qi 1201 (1468)
.+..+-+++-.=|+.+.-|+---.--|++..+=||-|=.|....+-.|---.-=+-+-..|+..|-+.|.--++.|.+|+
T Consensus 447 qclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 447 QCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 34444444444455555555544555667777777665555444444333233356777888888899999999988886
No 217
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=55.52 E-value=1.7e+02 Score=35.11 Aligned_cols=132 Identities=23% Similarity=0.338 Sum_probs=75.5
Q ss_pred hhc-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh--------hhhhhhhhhhhhHHHHHHhHHhHHHHhHH
Q 041227 486 IEQ-QDDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIE--------MERHLKTQTLMHYEAEWRSRIAEKEENIV 556 (1468)
Q Consensus 486 IEl-~D~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~--------~~~~~~~q~l~~~e~e~~~kls~kE~eI~ 556 (1468)
+.+ +|.++|-++++||.--.+|.+.++..-+--|...-.+|. -+.+++||+- ..-++......+++
T Consensus 216 Vt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~-----~l~q~fr~a~~~ls 290 (384)
T KOG0972|consen 216 VTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLA-----SLMQKFRRATDTLS 290 (384)
T ss_pred ehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 455 889999999999999999999999876666655444443 1444554421 01112222233333
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhccccccCCCCCCCCCCC
Q 041227 557 NLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLALLFKLKESGKDLLTGGASSHECPDN 636 (1468)
Q Consensus 557 ~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~~~~~~~~~s~~~~~~~ 636 (1468)
.++.+-.. .+ +++...++.--+.|-||+-+|+.++ + .|..| +.
T Consensus 291 e~~e~y~q----~~-~gv~~rT~~L~eVm~e~E~~KqemE---------------------e-~G~~m----------sD 333 (384)
T KOG0972|consen 291 ELREKYKQ----AS-VGVSSRTETLDEVMDEIEQLKQEME---------------------E-QGAKM----------SD 333 (384)
T ss_pred HHHHHHHH----hc-ccHHHHHHHHHHHHHHHHHHHHHHH---------------------H-hcccc----------cC
Confidence 33333211 11 1222333333456677777777765 2 22222 22
Q ss_pred CccccchhHHHHHhHhHhhhHHHHHHHHH
Q 041227 637 KSVFESESEVVQLKSQICKLEEELQERNA 665 (1468)
Q Consensus 637 ~~~~~~es~~~~l~~q~~~leee~~~~~~ 665 (1468)
+ +.+++.+.-++||.++.+..+.
T Consensus 334 G------aplvkIkqavsKLk~et~~mnv 356 (384)
T KOG0972|consen 334 G------APLVKIKQAVSKLKEETQTMNV 356 (384)
T ss_pred C------chHHHHHHHHHHHHHHHHhhhh
Confidence 2 2378888999999888887644
No 218
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=55.38 E-value=27 Score=34.04 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=42.6
Q ss_pred ccccccccchhcccccCcchhhhhhhheeeEE-eccCCCccccceeeechhhhccccCccceeeccCCCC-CCCeEEEEe
Q 041227 42 NCRWIETFSESIWIPQDNALKEIEECLIKLVV-TMGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCN-SGTSLQLKI 119 (1468)
Q Consensus 42 ~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-SmGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cn-sGTVLHVtI 119 (1468)
+..|...+.=.+.. + ......|-| .-...+..+||++.|+++++.... .....+||.... ...-|||.+
T Consensus 46 nP~Wne~f~f~v~~---~-----~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~~~~G~i~l~l 116 (118)
T cd08681 46 HPEWDEELRFEITE---D-----KKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEG-EFDDWYELTLKGRYAGEVYLEL 116 (118)
T ss_pred CCccCceEEEEecC---C-----CCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcC-CCCCcEEeccCCcEeeEEEEEE
Confidence 77888776544432 1 233455545 434334789999999999987643 357778885432 223556655
Q ss_pred e
Q 041227 120 Q 120 (1468)
Q Consensus 120 Q 120 (1468)
+
T Consensus 117 ~ 117 (118)
T cd08681 117 T 117 (118)
T ss_pred E
Confidence 3
No 219
>PRK11281 hypothetical protein; Provisional
Probab=54.68 E-value=7.9e+02 Score=34.38 Aligned_cols=250 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhccc
Q 041227 1129 KVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEK 1208 (1468)
Q Consensus 1129 ~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~der 1208 (1468)
.+.+|+..+. +..+.+...+.....+.++..+ ..++...+++++.|.+ ...-.-.
T Consensus 61 ~~~~l~~tL~------------~L~qi~~~~~~~~~L~k~l~~A-----------p~~l~~a~~~Le~Lk~--~~~~~~~ 115 (1113)
T PRK11281 61 VQQDLEQTLA------------LLDKIDRQKEETEQLKQQLAQA-----------PAKLRQAQAELEALKD--DNDEETR 115 (1113)
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHhhc--ccccccc
Q ss_pred ccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhh
Q 041227 1209 DGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLED 1288 (1468)
Q Consensus 1209 e~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~ 1288 (1468)
...+.-++.+ |=+..+.+++.|+++|+.+--|+++|-.++...+.--..+.
T Consensus 116 ~~~~~~Sl~q---LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ls-------------------------- 166 (1113)
T PRK11281 116 ETLSTLSLRQ---LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALY-------------------------- 166 (1113)
T ss_pred ccccccCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH--------------------------
Q ss_pred hCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHH------------HhhhhhHHHHHHHHHHHHhhhhHHHH
Q 041227 1289 VKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLER------------TAQFQDEVLSLKKLLNEAKFENERLE 1356 (1468)
Q Consensus 1289 ~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk------------~~~lqdEv~~lk~sL~~~kfek~rLe 1356 (1468)
.....+..+..|++. ...+|-|...++....-.+.+-.--.
T Consensus 167 ---------------------------ea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~ 219 (1113)
T PRK11281 167 ---------------------------ANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNT 219 (1113)
T ss_pred ---------------------------HHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q ss_pred HHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHh----------hcCchhHHHhhhhhhHHHhh
Q 041227 1357 ASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLR----------LEGDLAAIEALGSQEAALKN 1426 (1468)
Q Consensus 1357 ~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~r----------le~dl~a~ea~~~~~aelk~ 1426 (1468)
....+.....+.++++=......|..+|.++++--...--++.-+..... +...+....++...-..+-.
T Consensus 220 ~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~ 299 (1113)
T PRK11281 220 QLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATE 299 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1427 ELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAI 1459 (1468)
Q Consensus 1427 el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~l 1459 (1468)
.++++.+.|.+..+.++.+.|-...++.+++.|
T Consensus 300 ~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l 332 (1113)
T PRK11281 300 KLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL 332 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 220
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=54.50 E-value=29 Score=34.78 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=45.6
Q ss_pred eEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-ecc-CCCccccceeeechhhhc
Q 041227 17 LVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TMG-SSRSGIVGEALVNLASYM 94 (1468)
Q Consensus 17 LfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-SmG-SSRSgiLGEasINLAdYa 94 (1468)
.-|.+.|........| +.|..++ .+|+|.-+-.. +....++..+...|-| ..| .++..+||++.|+|+++-
T Consensus 41 Vkv~l~p~~~~~~~~k---T~v~~~t---~nP~~nE~f~f-~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~ 113 (125)
T cd08393 41 VKTYLLPDKSNRGKRK---TSVKKKT---LNPVFNETLRY-KVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD 113 (125)
T ss_pred EEEEEEcCCCcccccc---CccCcCC---CCCccCceEEE-ECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc
Confidence 3456677654333333 3344444 34444332111 2333456666677777 333 367889999999999995
Q ss_pred cccCccceeecc
Q 041227 95 NSKTSVPLTLPL 106 (1468)
Q Consensus 95 eAtkP~sVSLPL 106 (1468)
-. .+.+.-.||
T Consensus 114 ~~-~~~~~W~~L 124 (125)
T cd08393 114 WS-NTQPTWYPL 124 (125)
T ss_pred cC-CCCcceEEC
Confidence 44 444444454
No 221
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=54.47 E-value=33 Score=35.26 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=49.8
Q ss_pred cCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-e-ccCCCccccceeeechhhhcc----ccCc
Q 041227 26 TGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-T-MGSSRSGIVGEALVNLASYMN----SKTS 99 (1468)
Q Consensus 26 tGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-S-mGSSRSgiLGEasINLAdYae----AtkP 99 (1468)
.|..+.||. ..-.+-+..|...++=.+ .++. .....|-| . -..++..+||.+.|++.++.. .-.|
T Consensus 44 ~~~~~~kT~-vi~~t~nP~Wne~f~f~v---~~~~-----~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 114 (136)
T cd08375 44 MGSQEHKTK-VVSDTLNPKWNSSMQFFV---KDLE-----QDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGP 114 (136)
T ss_pred ECCEeeecc-ccCCCCCCccCceEEEEe---cCcc-----CCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCc
Confidence 355554433 222455566766543222 2322 23444545 2 223456899999999999986 3345
Q ss_pred cceeeccCCCCCCCeEEEEe
Q 041227 100 VPLTLPLKKCNSGTSLQLKI 119 (1468)
Q Consensus 100 ~sVSLPLK~cnsGTVLHVtI 119 (1468)
.+--+||++-+.| -+||+|
T Consensus 115 ~~~~~~~~~~~~g-~i~l~~ 133 (136)
T cd08375 115 ITKRLLLHEVPTG-EVVVKL 133 (136)
T ss_pred EEEEeccccccce-eEEEEE
Confidence 5566888888888 556665
No 222
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=54.29 E-value=4.2e+02 Score=31.13 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1438 FQRRIKCLEKEKEDCLSRAQAIEEELK 1464 (1468)
Q Consensus 1438 ~q~ki~~le~E~ee~~~r~q~lE~elk 1464 (1468)
...++..++++..+...++..++..+.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566666666666665555554
No 223
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=54.21 E-value=68 Score=33.49 Aligned_cols=85 Identities=31% Similarity=0.437 Sum_probs=47.4
Q ss_pred Hhhhhhhhhhccccccc-------hHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhh---h
Q 041227 1294 EKFRGTIRGLELKLKAS-------DYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQIL---S 1363 (1468)
Q Consensus 1294 eklk~t~~~LElklk~s-------~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~---S 1363 (1468)
++|.++|+.+|..+... .-+|-++.+||..|-.........-.++..|+..+.+.+. |..+.|+++ +
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~---ry~t~LellGEK~ 95 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQ---RYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcchH
Confidence 34555555555544332 2234455555555555555555555555556666666554 445556654 6
Q ss_pred hchHHHHHH----HhhHHHhhh
Q 041227 1364 GDYEELKAE----RISFMQKIS 1381 (1468)
Q Consensus 1364 ~e~eeLkae----k~~~~~kis 1381 (1468)
++++||++. |.||-.-|.
T Consensus 96 E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 96 EEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 788888875 555555443
No 224
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=54.01 E-value=4.7e+02 Score=31.56 Aligned_cols=62 Identities=24% Similarity=0.243 Sum_probs=36.9
Q ss_pred HHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHh
Q 041227 1176 LNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKL 1240 (1468)
Q Consensus 1176 lnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~ 1240 (1468)
+-..|.++.-.|..+++++..|..++.. +-.++....-.+...+++..+.|++.+.+.+.++
T Consensus 273 l~~~y~~~hP~v~~l~~~i~~l~~~l~~---e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 334 (444)
T TIGR03017 273 LSQRLGPNHPQYKRAQAEINSLKSQLNA---EIKKVTSSVGTNSRILKQREAELREALENQKAKV 334 (444)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888888888888754 2222333333344445555555555555444433
No 225
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=53.73 E-value=2e+02 Score=37.95 Aligned_cols=237 Identities=23% Similarity=0.260 Sum_probs=116.6
Q ss_pred HHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCc
Q 041227 996 LSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANP 1075 (1468)
Q Consensus 996 LserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~ 1075 (1468)
++-|...+|++++-..- ..+-+......||--|+ +-.+||.+..-+.--.-.++.-+|-+.---.+-|.
T Consensus 26 ~ttr~~e~e~~~~~ar~-------~~~~a~e~~~~lq~~~~----e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~nd 94 (916)
T KOG0249|consen 26 LTTRVPELEHSLPEARK-------DLIKAEEMNTKLQRDIR----EAMAQKEDMEERITTLEKRFLNAQRESTSIHDLND 94 (916)
T ss_pred CcCCcHHHHhhhhhhHH-------HHHHHHHHHHHHhhhhh----hHHhhhcccccccchHHHHHHhccCCCCCcccchH
Confidence 44455555555554332 22333334444444444 55566666666665566677777777777777777
Q ss_pred hhhhhhhhH-HHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHH
Q 041227 1076 KLQATAEGL-IEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLE 1154 (1468)
Q Consensus 1076 kLQaT~e~l-ieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~E 1154 (1468)
||-+-..+- .+-|- ++..+.-|.++....|.+|.+|.+ ..+...+|+++. -.
T Consensus 95 klE~~Lankda~lrq--------~eekn~slqerLelaE~~l~qs~r-----ae~lpeveael~--------------qr 147 (916)
T KOG0249|consen 95 KLENELANKDADLRQ--------NEEKNRSLQERLELAEPKLQQSLR-----AETLPEVEAELA--------------QR 147 (916)
T ss_pred HHHHHHhCcchhhch--------hHHhhhhhhHHHHHhhHhhHhHHh-----hhhhhhhHHHHH--------------HH
Confidence 875433321 11121 223445567777788888888877 456677777666 22
Q ss_pred HHHHHHHhhhhcchhhhHHHHHHHhhh---hhHHHhhhH-HHHHHHH--HHhhhhhhcccccchhHHHHHHhhhhhhhHH
Q 041227 1155 LDALLHENRKHKDKSVTEESLLNQMYM---EKTVEAQNL-QREVAHL--TEQISATYDEKDGTHSEAVLEVSHLRADKAV 1228 (1468)
Q Consensus 1155 Le~l~qE~~~~~ek~~~~~~llnq~~~---Ek~vevenL-qrEv~~L--t~QiSat~dere~~~s~av~EvS~LrAdkA~ 1228 (1468)
++++..-+..+..+..+ +-++|. |+..|+..+ |||=+.+ ..-+|.|-|||...++. |-+---.||-.
T Consensus 148 ~~al~~aee~~~~~eer----~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlk---ermaAle~kn~ 220 (916)
T KOG0249|consen 148 NAALTKAEEHSGNIEER----TRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLK---ERMAALEDKNR 220 (916)
T ss_pred HHHHHHHHHhhccHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHH---HHHHHHHHHHH
Confidence 33333333444444433 334443 233333322 1111111 22356666655554432 33333334555
Q ss_pred HHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhh
Q 041227 1229 LEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMAD 1278 (1468)
Q Consensus 1229 lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d 1278 (1468)
|+..+..+.-++.-..-.-+.|+ ..+..+.+.++.|-++.+-++.-|-|
T Consensus 221 L~~e~~s~kk~l~~~~~~k~rl~-~d~E~Lr~e~~qL~~~~~~~~~~mrd 269 (916)
T KOG0249|consen 221 LEQELESVKKQLEEMRHDKDKLR-TDIEDLRGELDQLRRSSLEKEQELRD 269 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 55544444433333322223333 34555666666665555544443333
No 226
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=53.56 E-value=29 Score=34.08 Aligned_cols=57 Identities=26% Similarity=0.335 Sum_probs=49.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhH
Q 041227 1039 EAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSN 1095 (1468)
Q Consensus 1039 ~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~ 1095 (1468)
..++-.+..+|..-|+.+=.|.-+|++||+-|+..|.-||--+++|+-..+-++..+
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~~s~~ 74 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVFQSTS 74 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 345666778888889999999999999999999999999999999999888777554
No 227
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.40 E-value=1.5e+02 Score=35.13 Aligned_cols=59 Identities=27% Similarity=0.369 Sum_probs=42.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchH-------HHHHHHhhHHHhhhhHHHH
Q 041227 1328 LERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYE-------ELKAERISFMQKISTSQQV 1386 (1468)
Q Consensus 1328 lqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~e-------eLkaek~~~~~kis~~q~~ 1386 (1468)
||||..|+--+-.||++-..-+|-.+-|||.|+---.--+ -||.+..+|+.-...++++
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 7888888888889999999999999999999986544333 3455555554444444443
No 228
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=53.25 E-value=3.9e+02 Score=30.45 Aligned_cols=112 Identities=19% Similarity=0.219 Sum_probs=50.3
Q ss_pred hhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhh
Q 041227 986 LHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQE 1065 (1468)
Q Consensus 986 ls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qe 1065 (1468)
|..+-.|.-++...+..+|.-...|-.=.+-++-.+.+.+..=.. ||...+++..+...-+.
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~------------------Lkk~~~ey~~~l~~~eq 132 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEET------------------LKKCIEEYEERLKKEEQ 132 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHHHHH
Confidence 444445555555555555555554444444333333333332222 44444455555544444
Q ss_pred hhhHHhhcC-chhhhhhhhHHHHhhhH----HHhHHHHHHHHhhhhhhhHHHHHH
Q 041227 1066 ECEYLKVAN-PKLQATAEGLIEECSLL----QKSNAELRKQKVNLHEHCAVLEAQ 1115 (1468)
Q Consensus 1066 e~e~Lr~~N-~kLQaT~e~lieec~sl----Q~~~~eLr~qklelh~~~t~lE~k 1115 (1468)
--..||.+. .||..-++.+-+..++. ..+.+-||+.-+.++.--..|+++
T Consensus 133 ry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK 187 (207)
T PF05010_consen 133 RYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQK 187 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444553332 25544444444444442 334455555555444433344443
No 229
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=53.24 E-value=4.9e+02 Score=31.55 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=22.8
Q ss_pred hhhhhhhhhhHHHHHHHhhHHHHHhhhhhh
Q 041227 984 VHLHELEEENLQLSERICGLEAQLRYLTNE 1013 (1468)
Q Consensus 984 ~hls~Le~En~qLserisgLEaql~~lt~E 1013 (1468)
..|..|=.+-.+.+.++++||.+...+..+
T Consensus 322 ~tL~~lH~~a~~~~~~l~~le~~q~~l~~~ 351 (388)
T PF04912_consen 322 KTLKSLHEEAAEFSQTLSELESQQSDLQSQ 351 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888887776654
No 230
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=52.96 E-value=21 Score=35.76 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=36.2
Q ss_pred hheeeEEec--cCCCccccceeeechhhhccccCccceeeccCCCC-----CCCeEEEEee
Q 041227 67 CLIKLVVTM--GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCN-----SGTSLQLKIQ 120 (1468)
Q Consensus 67 KIYKfVVSm--GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cn-----sGTVLHVtIQ 120 (1468)
+..+|.|-. ..++..++|.+.|+++++.. ..+...-+||+.-. +|.| |+.+.
T Consensus 62 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~G~i-~l~~~ 120 (121)
T cd08401 62 RHLSFYIYDRDVLRRDSVIGKVAIKKEDLHK-YYGKDTWFPLQPVDADSEVQGKV-HLELR 120 (121)
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHccC-CCCcEeeEEEEccCCCCcccEEE-EEEEE
Confidence 567777744 34566899999999999875 34467788886421 4666 87664
No 231
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.70 E-value=4.8e+02 Score=31.30 Aligned_cols=174 Identities=24% Similarity=0.297 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccc
Q 041227 293 KIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKF 372 (1468)
Q Consensus 293 tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~ 372 (1468)
.+..||.+++-++.--+|-|.- -+.|..|=+.|.-+-|-||..++.|--..-....+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~--------------naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re--------- 134 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVS--------------NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQRE--------- 134 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH--------------HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 6778899998888666666632 34788888999999999999998887555431111
Q ss_pred cccChhHHHHHHHHHHhhhhhhchhHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhchhhhhH
Q 041227 373 QARDTDKKINELEDEIKFQKESNANLAIQLNKTQESNIELISILQELEETLAKQKMEIEDLSKMKSEFEEVVGDSKQINT 452 (1468)
Q Consensus 373 e~eD~~~lleELrdEL~yEKE~NaNL~LQLqKTQESN~ELVlaVQDLEEmLEqk~~EIs~LS~~~~e~dd~~~d~~q~~~ 452 (1468)
++|--.++..+|....-|+.++. +|=-.|...+++|++.=.=|-.= .......+...+- ..
T Consensus 135 --------~~eK~~elEr~K~~~d~L~~e~~-------~Lre~L~~rdeli~khGlVlv~~-~~ngd~~~~~~~~---~~ 195 (302)
T PF09738_consen 135 --------YREKIRELERQKRAHDSLREELD-------ELREQLKQRDELIEKHGLVLVPD-ATNGDTSDEPNNV---GH 195 (302)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCeeeCCC-CCCCccccCcccc---CC
Confidence 12223345555555444444443 33345567777775543222110 1222222210000 00
Q ss_pred HHHHHH-HhhcccCCCCCCCCccccccccchhhhhhcccchhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q 041227 453 AKQILV-KKRRDTSCDSDQEGSIVEHPIRDLNAKIEQQDDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEME 529 (1468)
Q Consensus 453 ~~~~lV-K~~~da~c~~~~e~s~lE~kI~dL~~eIEl~D~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~ 529 (1468)
..-.+| ++ ..++| +....+.|...+..|.+-++.|...|+.|...|++..+....+
T Consensus 196 ~~~~~vs~e----------~a~~L-----------~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~ 252 (302)
T PF09738_consen 196 PKRALVSQE----------AAQLL-----------ESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQ 252 (302)
T ss_pred Ccccccchh----------hhhhh-----------cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 000011 11 00111 1135667888899999999999999999999999877655533
No 232
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=52.69 E-value=5.7e+02 Score=32.14 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=15.5
Q ss_pred HhhhHHHHHHHHHHhhhhhhccccc
Q 041227 1186 EAQNLQREVAHLTEQISATYDEKDG 1210 (1468)
Q Consensus 1186 evenLqrEv~~Lt~QiSat~dere~ 1210 (1468)
.-.+|..+|.++-.++....+.++.
T Consensus 232 ~~~~L~~~Ias~e~~aA~~re~~aa 256 (420)
T COG4942 232 NESRLKNEIASAEAAAAKAREAAAA 256 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777666665555553
No 233
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=52.47 E-value=18 Score=35.98 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=42.9
Q ss_pred CcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-eccCC---CccccceeeechhhhccccCccce
Q 041227 27 GKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TMGSS---RSGIVGEALVNLASYMNSKTSVPL 102 (1468)
Q Consensus 27 GKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-SmGSS---RSgiLGEasINLAdYaeAtkP~sV 102 (1468)
|...+||. ..-.+-+..|..+++=.+. + .....|-| ..++. ...+||.+.|++.+......+..-
T Consensus 31 ~~~~~kT~-v~~~t~nP~Wne~f~~~~~----~------~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 99 (123)
T cd08382 31 GGQTHSTD-VAKKTLDPKWNEHFDLTVG----P------SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQ 99 (123)
T ss_pred CccceEcc-EEcCCCCCcccceEEEEeC----C------CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccc
Confidence 45556653 2223447778777665542 1 23455555 43332 247999999999999887766555
Q ss_pred eecc
Q 041227 103 TLPL 106 (1468)
Q Consensus 103 SLPL 106 (1468)
.+||
T Consensus 100 ~~~l 103 (123)
T cd08382 100 RLDL 103 (123)
T ss_pred eeEe
Confidence 7777
No 234
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=52.45 E-value=21 Score=41.88 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=33.1
Q ss_pred hhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 041227 690 KVCYLDGELCKSRFRAQEQEVQIAALQQQLELFQGKE 726 (1468)
Q Consensus 690 ~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~~~~e 726 (1468)
-+.||..+|+.+..+|.+|.-||.+|+.||...+.--
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999998877643
No 235
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=52.39 E-value=23 Score=34.66 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=42.4
Q ss_pred cCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEEe--ccCCCccccceeeechhhhcc--ccCccc
Q 041227 26 TGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVVT--MGSSRSGIVGEALVNLASYMN--SKTSVP 101 (1468)
Q Consensus 26 tGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVVS--mGSSRSgiLGEasINLAdYae--AtkP~s 101 (1468)
.|..+.||.- .-++-+..|...+.=.+. + .......|.|= -..++..+||.+.|.+++... ......
T Consensus 32 ~~~~~~kT~~-~~~t~~P~Wne~f~~~~~---~-----~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~ 102 (128)
T cd04024 32 VGAQRFKTQT-IPNTLNPKWNYWCEFPIF---S-----AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSD 102 (128)
T ss_pred ECCEEEecce-ecCCcCCccCCcEEEEec---C-----CCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccc
Confidence 3666665542 223344556554332221 1 12345666662 233467899999999999874 223345
Q ss_pred eeeccCCC
Q 041227 102 LTLPLKKC 109 (1468)
Q Consensus 102 VSLPLK~c 109 (1468)
--+||..+
T Consensus 103 ~w~~L~~~ 110 (128)
T cd04024 103 KWITLKST 110 (128)
T ss_pred eeEEccCc
Confidence 66788766
No 236
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.35 E-value=3.4e+02 Score=30.50 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=41.0
Q ss_pred HhhcCchhhhhhhhHHHHhh-hHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhh
Q 041227 1070 LKVANPKLQATAEGLIEECS-LLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEIS 1145 (1468)
Q Consensus 1070 Lr~~N~kLQaT~e~lieec~-slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~is 1145 (1468)
++..|..|++.++.+++... .-......++.+...+..++..+...+..-++.....-+.+..+-..+...-..++
T Consensus 32 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 32 LKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555211 12233445555666666677777777666666666665556655555554444443
No 237
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.31 E-value=4.6e+02 Score=30.96 Aligned_cols=129 Identities=19% Similarity=0.305 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHhhhhccccccCCCCCCCCCCCCccccchhHHHHHhHhHhhhHHHHHHHHHHHHhhh
Q 041227 592 KQKVLELEKDCNELTEENLALLFKLKESGKDLLTGGASSHECPDNKSVFESESEVVQLKSQICKLEEELQERNALIERLS 671 (1468)
Q Consensus 592 k~kvqeLE~dc~ELtdEnl~l~~klkEs~~~~~~~~~s~~~~~~~~~~~~~es~~~~l~~q~~~leee~~~~~~~~~~~~ 671 (1468)
+.-+++|.+-|..||.-|.+|+..+--.- ++.. .++..|=..-..+...+.-+.
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE-~st~-------------------------~~Vr~lLqqy~~~~~~i~~le 58 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTE-DSTA-------------------------LKVRKLLQQYDIYRTAIDILE 58 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHH-hhHH-------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 56689999999999999999987776532 1111 122222222223333344444
Q ss_pred hcccc-cchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCccccccccccchhHH
Q 041227 672 TYENR-SDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELFQGKEAESKDHPAAVCPLCKIYESDDFLE 750 (1468)
Q Consensus 672 ~~~~k-~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~ 750 (1468)
+.+.+ ..++...|+.|+.+. +.++...+.++.+-+-.|...+.+|.+++- -+| +.+--
T Consensus 59 ~~~~~~l~~ak~eLqe~eek~---e~~l~~Lq~ql~~l~akI~k~~~el~~L~T-----------------YkD-~EYPv 117 (258)
T PF15397_consen 59 YSNHKQLQQAKAELQEWEEKE---ESKLSKLQQQLEQLDAKIQKTQEELNFLST-----------------YKD-HEYPV 117 (258)
T ss_pred ccChHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------Hhh-hhhhH
Confidence 44433 666777777776543 455666666666666666666666654433 223 56655
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041227 751 MSRLLSELYEQIQLSLANLKK 771 (1468)
Q Consensus 751 ~s~~~sel~~ql~~~l~~~kk 771 (1468)
.+--|.+|..||+ ++|+
T Consensus 118 K~vqIa~L~rqlq----~lk~ 134 (258)
T PF15397_consen 118 KAVQIANLVRQLQ----QLKD 134 (258)
T ss_pred HHHHHHHHHHHHH----HHHH
Confidence 5555555555544 5564
No 238
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=52.25 E-value=25 Score=33.99 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=31.1
Q ss_pred hheeeEE-ec-cCCCccccceeeechhhhccccCccceeeccCCCC
Q 041227 67 CLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCN 110 (1468)
Q Consensus 67 KIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cn 110 (1468)
....|-| .. ..++..++|++.+++++... ..+...++||..+.
T Consensus 61 ~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~g 105 (115)
T cd04040 61 AVLKVEVYDWDRGGKDDLLGSAYIDLSDLEP-EETTELTLPLDGQG 105 (115)
T ss_pred CEEEEEEEeCCCCCCCCceEEEEEEHHHcCC-CCcEEEEEECcCCC
Confidence 3444544 33 34578899999999999765 46689999997654
No 239
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=52.19 E-value=2e+02 Score=31.96 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=64.3
Q ss_pred HHHHHHHHHH-HHHHHHHHhhHH-HHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhcccc
Q 041227 294 IEELHAEARM-WEQNARKLMTDL-EKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLK 371 (1468)
Q Consensus 294 IEeLK~E~~~-LeR~Adkl~~EL-QtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk 371 (1468)
..+++.+..| +..+....+.-. ...||.+..+- ...++..++..|+.|+..|+.++..|+.-......+..
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~-~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~------ 158 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQ-GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE------ 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3456666655 333333333332 36667666653 34688888888888888888888888766554221111
Q ss_pred ccccChhHHHHHHHHHHhhhhhhchhHHHhHhh
Q 041227 372 FQARDTDKKINELEDEIKFQKESNANLAIQLNK 404 (1468)
Q Consensus 372 ~e~eD~~~lleELrdEL~yEKE~NaNL~LQLqK 404 (1468)
+......+-..+|+.|.|-.|.-|.-||+.
T Consensus 159 ---e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 159 ---ELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011223466788999999999999988875
No 240
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=51.73 E-value=26 Score=34.14 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=43.6
Q ss_pred ccccccCC-c-c----ce-eEEEEEEcccCccccccccccccc-CccccccccchhcccccCcchhhhhhhheeeEEe-c
Q 041227 5 IWELQVPK-G-W----DK-LVVSVVLVETGKTIAKSSKAPVRN-GNCRWIETFSESIWIPQDNALKEIEECLIKLVVT-M 75 (1468)
Q Consensus 5 FhATQVP~-G-w----Dk-LfVSiVp~DtGKtTAKteKA~VRn-G~CrWedPIyETvkl~qD~KTkk~~EKIYKfVVS-m 75 (1468)
++|-++|. . + |- .-|.+.|...+....||. . +++ -+..|..++. |. ..-..+..+..+|.|- .
T Consensus 21 ~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~-v-~~~t~~P~wne~f~----f~--i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 21 KECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTS-V-KKNTTNPVFNETLK----YH--ISKSQLETRTLQLSVWHH 92 (123)
T ss_pred EEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeecc-c-cCCCCCCcccceEE----Ee--CCHHHhCCCEEEEEEEeC
Confidence 56667763 1 2 22 345566765433333332 2 222 3445555433 11 1112334556677663 2
Q ss_pred -cCCCccccceeeechhhhc
Q 041227 76 -GSSRSGIVGEALVNLASYM 94 (1468)
Q Consensus 76 -GSSRSgiLGEasINLAdYa 94 (1468)
+.++..++|++.|+++++.
T Consensus 93 ~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 93 DRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred CCCcCCceeeEEEEeccccc
Confidence 3457889999999999984
No 241
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.82 E-value=7.6e+02 Score=32.74 Aligned_cols=205 Identities=18% Similarity=0.211 Sum_probs=113.3
Q ss_pred hhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHH
Q 041227 968 LESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKV 1047 (1468)
Q Consensus 968 le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~ 1047 (1468)
.-+++.+...+++.|..-|...++|...|...|.+.--..+ +.+-...-.+..-..|.-...+|-.|+.
T Consensus 52 y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~-----------~~~k~e~tLke~l~~l~~~le~lr~qk~ 120 (660)
T KOG4302|consen 52 YKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE-----------ISDKIEGTLKEQLESLKPYLEGLRKQKD 120 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-----------cccccCccHHHHHHHHHHHHHHHHHHHH
Confidence 33556677777777666666665555555555444433333 1111222222222334445557788888
Q ss_pred HHHHHHHHHHHhHhhhhhhhhHHhhc---CchhhhhhhhHH-HHhhhHHHhHHHHHHHHh-----------hhhhhhHHH
Q 041227 1048 ETKQKLQDMQKRWLGVQEECEYLKVA---NPKLQATAEGLI-EECSLLQKSNAELRKQKV-----------NLHEHCAVL 1112 (1468)
Q Consensus 1048 ~~kqk~qe~q~~wse~Qee~e~Lr~~---N~kLQaT~e~li-eec~slQ~~~~eLr~qkl-----------elh~~~t~l 1112 (1468)
+-+...-+++.+. |.=|+-|-+. +.++-+-...|. +....|+...++|+++|- ++|..|.+|
T Consensus 121 eR~~ef~el~~qi---e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 121 ERRAEFKELYHQI---EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHHHHH---HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887777777665 3345555433 445544444554 777788888888887764 344445444
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhh---HHHhhh
Q 041227 1113 EAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEK---TVEAQN 1189 (1468)
Q Consensus 1113 E~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek---~veven 1189 (1468)
+ .+|..+|..++..|.+-....+ +.+. .+.+.+-.-+++++..+| .--+.+
T Consensus 198 g----------~~~~~~vt~~~~sL~~~~~~~~---~~is-------------~etl~~L~~~v~~l~~~k~qr~~kl~~ 251 (660)
T KOG4302|consen 198 G----------LDFSMTVTDVEPSLVDHDGEQS---RSIS-------------DETLDRLDKMVKKLKEEKKQRLQKLQD 251 (660)
T ss_pred C----------CCcccchhhhhhhhhhccCccc---ccCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3455555555555554333222 2222 223333333444444443 234677
Q ss_pred HHHHHHHHHHhhhhhhcccccch
Q 041227 1190 LQREVAHLTEQISATYDEKDGTH 1212 (1468)
Q Consensus 1190 LqrEv~~Lt~QiSat~dere~~~ 1212 (1468)
|...+-.|=+-|..+++||....
T Consensus 252 l~~~~~~LWn~l~ts~Ee~~~f~ 274 (660)
T KOG4302|consen 252 LRTKLLELWNLLDTSDEERQRFV 274 (660)
T ss_pred HHHHHHHHHHhccCCHHHHHHHc
Confidence 77788888888888888887763
No 242
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.76 E-value=84 Score=32.88 Aligned_cols=94 Identities=16% Similarity=0.300 Sum_probs=69.7
Q ss_pred ccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHH
Q 041227 957 DMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIR 1036 (1468)
Q Consensus 957 s~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~ 1036 (1468)
..|-....+..|..++..+.+--..|..++..|+..+.++-..++++++..+.++.... ......+..++++.
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~-------~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK-------SLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 34556667777888888888888888899999999999999999999999988877654 44566677778888
Q ss_pred HHHHHHHHh----HHHHHHHHHHHH
Q 041227 1037 RLEAEMEAQ----KVETKQKLQDMQ 1057 (1468)
Q Consensus 1037 r~~~e~e~q----k~~~kqk~qe~q 1057 (1468)
++..-+..- ..++|.|-.++.
T Consensus 119 klk~~~~~~~tq~~~e~rkke~E~~ 143 (151)
T PF11559_consen 119 KLKNQLQQRKTQYEHELRKKEREIE 143 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777655543 346666655543
No 243
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=49.69 E-value=3.8e+02 Score=29.42 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=88.1
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhh---------------HHHHHHHHHhHHHHh
Q 041227 1080 TAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMK---------------VEALEEKYLSMLEEI 1144 (1468)
Q Consensus 1080 T~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~---------------Ve~LE~kl~s~le~i 1144 (1468)
-+|+.=.||..|++...++|.+-.+.-..+-.|+.+-+.|+.+-++.++- ...+.-+|..+.
T Consensus 21 I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~r--- 97 (159)
T PF05384_consen 21 IAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLR--- 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHH---
Confidence 35566678888888888888888888888888888777777776666654 344555555443
Q ss_pred hhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhc
Q 041227 1145 SSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYD 1206 (1468)
Q Consensus 1145 ssKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~d 1206 (1468)
.+|+.|-.--|.|=..-+..++-+.+|+.|.+||- |-..=|.-.+.+++.++.....
T Consensus 98 -e~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~----vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 98 -EREKQLRERRDELERRLRNLEETIERAENLVSQIG----VVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHH
Confidence 57888888777777777888888899999999984 5566666777777777665543
No 244
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=49.67 E-value=34 Score=33.56 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=36.3
Q ss_pred heeeEE-eccCCCccccceeeechhhhccccCccceeeccCCCCCCCeEEEEe
Q 041227 68 LIKLVV-TMGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTSLQLKI 119 (1468)
Q Consensus 68 IYKfVV-SmGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGTVLHVtI 119 (1468)
..+|-| ..+..+..++|++.|++++.... .+....+||..-..| -|||.|
T Consensus 65 ~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g-~~~~~~~~L~~~~~g-~l~~~~ 115 (119)
T cd04036 65 VLELTVMDEDYVMDDHLGTVLFDVSKLKLG-EKVRVTFSLNPQGKE-ELEVEF 115 (119)
T ss_pred EEEEEEEECCCCCCcccEEEEEEHHHCCCC-CcEEEEEECCCCCCc-eEEEEE
Confidence 456655 44444788999999999987654 579999999876545 456654
No 245
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.29 E-value=3.4e+02 Score=28.50 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=85.5
Q ss_pred hHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHh
Q 041227 1083 GLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHEN 1162 (1468)
Q Consensus 1083 ~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~ 1162 (1468)
.+|--..+|=.+-..-..+...|.....-+++....-+..+..+-..++.++.++.+.. .++..+...+..+-.-+
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~----~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAE----EKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34444444445555555666677777777777777777777777777777777777544 45667777777777778
Q ss_pred hhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhh
Q 041227 1163 RKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQIS 1202 (1468)
Q Consensus 1163 ~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiS 1202 (1468)
+..++-+.+.-..+.+..---.+|+..-++|+..|.+++.
T Consensus 111 k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 111 KQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888788888888889999999999999998874
No 246
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.21 E-value=5.8e+02 Score=31.23 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=76.1
Q ss_pred hhc-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHH---HHHhHHhHHHHhHHHHHHH
Q 041227 486 IEQ-QDDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEA---EWRSRIAEKEENIVNLEAK 561 (1468)
Q Consensus 486 IEl-~D~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~---e~~~kls~kE~eI~~L~~K 561 (1468)
|.+ .|.++|-.+++|++...+++....-.....|.-.-.+|.. +|..++. -..+++...=.+......+
T Consensus 209 v~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~-------~lekI~sREk~iN~qle~l~~eYr~~~~~ 281 (359)
T PF10498_consen 209 VTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK-------TLEKIESREKYINNQLEPLIQEYRSAQDE 281 (359)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344 6778999999999998888877665555555443333321 1111111 1122233333333334444
Q ss_pred HHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhccccccCCCCCCCCCCCCcccc
Q 041227 562 LSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLALLFKLKESGKDLLTGGASSHECPDNKSVFE 641 (1468)
Q Consensus 562 L~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~~~~~~~~~s~~~~~~~~~~~~ 641 (1468)
|+++... ...+-.-|.++-...+++|++.=..-..+.| ++..++ ++++
T Consensus 282 ls~~~~~-------------------y~~~s~~V~~~t~~L~~IseeLe~vK~emee-rg~~mt----------D~sP-- 329 (359)
T PF10498_consen 282 LSEVQEK-------------------YKQASEGVSERTRELAEISEELEQVKQEMEE-RGSSMT----------DGSP-- 329 (359)
T ss_pred HHHHHHH-------------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCC----------CCCH--
Confidence 4444432 2223344666677777777765444444445 433333 3333
Q ss_pred chhHHHHHhHhHhhhHHHHHHHHH
Q 041227 642 SESEVVQLKSQICKLEEELQERNA 665 (1468)
Q Consensus 642 ~es~~~~l~~q~~~leee~~~~~~ 665 (1468)
++..|..|.+|..|++....
T Consensus 330 ----lv~IKqAl~kLk~EI~qMdv 349 (359)
T PF10498_consen 330 ----LVKIKQALTKLKQEIKQMDV 349 (359)
T ss_pred ----HHHHHHHHHHHHHHHHHhhh
Confidence 78899999999988887743
No 247
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=49.14 E-value=1.8e+02 Score=37.02 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=63.2
Q ss_pred HHHHHhhhhHHHHH----HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhch----HHHHHHHhhHHHhhhhHHHHH
Q 041227 1316 QLTEEISSLKVQLE----RTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDY----EELKAERISFMQKISTSQQVV 1387 (1468)
Q Consensus 1316 q~~eE~s~LkvQlq----k~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~----eeLkaek~~~~~kis~~q~~~ 1387 (1468)
=++..|..|-.|+| |...+..|..+|..-|..+..++..+..-|....+.+ +||-..+..|...|+.|-+-+
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL 496 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46778888888888 5668999999999999999999988877777666654 667777889999999999988
Q ss_pred hhhhh
Q 041227 1388 SELDD 1392 (1468)
Q Consensus 1388 seled 1392 (1468)
..|++
T Consensus 497 asmNe 501 (518)
T PF10212_consen 497 ASMNE 501 (518)
T ss_pred HHHHH
Confidence 76665
No 248
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=49.12 E-value=5.5e+02 Score=30.97 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=23.6
Q ss_pred hhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHh
Q 041227 1106 HEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEI 1144 (1468)
Q Consensus 1106 h~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~i 1144 (1468)
-.+...++++|.+...+|.+=.-.|-.+.+++..+...|
T Consensus 260 ~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 260 KTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666555544
No 249
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.96 E-value=1.3e+02 Score=34.27 Aligned_cols=96 Identities=23% Similarity=0.253 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH-hHhhhhhhhhHHhhcCchhhhhhhhHHHHhhh---HHHhHHHHHHHHhhh
Q 041227 1030 SLQDEIRRLEAEMEAQKVETKQKLQDMQK-RWLGVQEECEYLKVANPKLQATAEGLIEECSL---LQKSNAELRKQKVNL 1105 (1468)
Q Consensus 1030 ~Lqdei~r~~~e~e~qk~~~kqk~qe~q~-~wse~Qee~e~Lr~~N~kLQaT~e~lieec~s---lQ~~~~eLr~qklel 1105 (1468)
.+++||.|.=..+-..+.++|..+.++.. |. -+++|+.|+ ++|.+|.. =++-.++|++---++
T Consensus 96 q~k~Eiersi~~a~~kie~lkkql~eaKi~r~--nrqe~~~l~-----------kvis~~p~RsEt~k~l~el~keleel 162 (222)
T KOG3215|consen 96 QKKLEIERSIQKARNKIELLKKQLHEAKIVRL--NRQEYSALS-----------KVISDCPARSETDKDLNELKKELEEL 162 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHH-----------HHHhcCCCcchhHHHHHHHHHHHHHH
Confidence 46777777777777777777777776654 33 355776654 57888864 467788999999999
Q ss_pred hhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 041227 1106 HEHCAVLEAQLGESEKGFSSLSMKVEALEEKYL 1138 (1468)
Q Consensus 1106 h~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~ 1138 (1468)
|..-+..+.+|.-.++-|..++-.++.|.|...
T Consensus 163 ~~~~~s~~~klelrRkqf~~lm~~~~elQ~ame 195 (222)
T KOG3215|consen 163 DDLNNSTETKLELRRKQFKYLMVSTEELQCAME 195 (222)
T ss_pred HHHhhhhHHHHHHHhhcchHHHhhHHHHHhhhh
Confidence 999999999999999999999999998885443
No 250
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=48.32 E-value=2.7e+02 Score=36.37 Aligned_cols=83 Identities=30% Similarity=0.379 Sum_probs=52.7
Q ss_pred ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHhHHhHHHHhHHHHHHHHHHHHHH
Q 041227 489 QDDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAEWRSRIAEKEENIVNLEAKLSEVLCA 568 (1468)
Q Consensus 489 ~D~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e~~~kls~kE~eI~~L~~KL~~~~~~ 568 (1468)
.|++-|.+|...|-|-------||-.||--++++. .+|-..|+ +|+.+|......
T Consensus 118 ~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr----------------------~kLnatEE---mLQqellsrtsL 172 (861)
T KOG1899|consen 118 MDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKR----------------------NKLNATEE---MLQQELLSRTSL 172 (861)
T ss_pred cchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHH----------------------hhhchHHH---HHHHHHHhhhhH
Confidence 47888889988888733233334445555444444 34444443 455555544433
Q ss_pred hhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhh
Q 041227 569 QALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNEL 605 (1468)
Q Consensus 569 ~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~EL 605 (1468)
+.- -++||-||-.||-|.--||+|-+|-
T Consensus 173 ETq---------KlDLmaevSeLKLkltalEkeq~e~ 200 (861)
T KOG1899|consen 173 ETQ---------KLDLMAEVSELKLKLTALEKEQNET 200 (861)
T ss_pred HHH---------HhHHHHHHHHhHHHHHHHHHHhhhH
Confidence 222 2689999999999999999998853
No 251
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.99 E-value=1.3e+02 Score=34.60 Aligned_cols=110 Identities=22% Similarity=0.299 Sum_probs=75.3
Q ss_pred hHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhh
Q 041227 1002 GLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATA 1081 (1468)
Q Consensus 1002 gLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~ 1081 (1468)
.||.+|..+-++.....-.|..|...|..|..+.++.+.+- . .++.+-.++.++..-|+....+.+..-
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea--~---------~Le~k~~eaee~~~rL~~~~~~~~eEk 77 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEA--E---------ELEQKRQEAEEEKQRLEEEAEMQEEEK 77 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777788888888888888888888665532 2 223334567778888888888888888
Q ss_pred hhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhh
Q 041227 1082 EGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKG 1122 (1468)
Q Consensus 1082 e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~ 1122 (1468)
+.|..+..-++.....|...+-.....+..|.++|..++..
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888988899999999988888888888888888877763
No 252
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=47.86 E-value=7.1e+02 Score=31.83 Aligned_cols=77 Identities=18% Similarity=0.129 Sum_probs=44.3
Q ss_pred hcccccchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCccccccccccchhHHH
Q 041227 672 TYENRSDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELFQGKEAESKDHPAAVCPLCKIYESDDFLEM 751 (1468)
Q Consensus 672 ~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~ 751 (1468)
..+....|.+-.+..||+... -..+......+..-...|..++..|.-+...+.
T Consensus 83 ~ie~~l~~ae~~~~~~~f~~a--~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~------------------------ 136 (569)
T PRK04778 83 DIEEQLFEAEELNDKFRFRKA--KHEINEIESLLDLIEEDIEQILEELQELLESEE------------------------ 136 (569)
T ss_pred hHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 566666667777777776544 233444444444445556666666655544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 041227 752 SRLLSELYEQIQLSLANLKKQQLLQ 776 (1468)
Q Consensus 752 s~~~sel~~ql~~~l~~~kk~~~~~ 776 (1468)
-=++.+.+|......+||.....
T Consensus 137 --~nr~~v~~l~~~y~~~rk~ll~~ 159 (569)
T PRK04778 137 --KNREEVEQLKDLYRELRKSLLAN 159 (569)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhc
Confidence 12455667777777777766654
No 253
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=47.86 E-value=58 Score=37.46 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHH
Q 041227 1048 ETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELR 1099 (1468)
Q Consensus 1048 ~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr 1099 (1468)
|+|.-+.+...++-|.|.+.+.|+..|-.||+..+-+-+..++|..-|.-|-
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666667778889988899999988888887777776665543
No 254
>smart00338 BRLZ basic region leucin zipper.
Probab=47.33 E-value=22 Score=32.39 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=30.3
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhh
Q 041227 979 KHEMEVHLHELEEENLQLSERICGLEAQLRYLTNER 1014 (1468)
Q Consensus 979 K~elE~hls~Le~En~qLserisgLEaql~~lt~E~ 1014 (1468)
-.+||..+..|+.+|..|...+.-|+.++.+|.++.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788889999999999999999999998887653
No 255
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=47.27 E-value=8.5e+02 Score=32.56 Aligned_cols=231 Identities=21% Similarity=0.302 Sum_probs=125.6
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcc
Q 041227 899 EEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESS 978 (1468)
Q Consensus 899 e~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~ 978 (1468)
+++...|...-.+|+..+..++..+.+.-..|..+.++. |.++++|.--....+++|+.=..|.+-|-+.-..
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~-------d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~ 233 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREA-------DLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPP 233 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCc
Confidence 445555666666777777776666655555566666664 6666665544444445544333333333333322
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHH--------HHH
Q 041227 979 KHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKV--------ETK 1050 (1468)
Q Consensus 979 K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~--------~~k 1050 (1468)
. .|--.-+.|..+|.+.+--|+ +||++.+...+=.-..+.+|.+=..-++.++ +.|+ ++.
T Consensus 234 ~----~~~~~we~Er~~L~~tVq~L~-------edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL-~~Kvqp~d~Le~e~~ 301 (739)
T PF07111_consen 234 E----VHSQAWEPEREELLETVQHLQ-------EDRDALQATAELLQVRVQSLTDILTLQEEEL-CRKVQPSDPLEPEFS 301 (739)
T ss_pred c----cccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCCCCCchhH
Confidence 2 333344566677777665554 8898888887777777777777666555444 3333 366
Q ss_pred HHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhH
Q 041227 1051 QKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKV 1130 (1468)
Q Consensus 1051 qk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~V 1130 (1468)
.|.+.+=++|- +-++.=|=-|...-.+++.-+-.|++.|+.|+.++..-.-.-.=+...+
T Consensus 302 ~K~q~LL~~WR--------------------EKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SL 361 (739)
T PF07111_consen 302 RKCQQLLSRWR--------------------EKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSL 361 (739)
T ss_pred HHHHHHHHHHH--------------------HHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777882 2233334445555555566566666667777666644332222222222
Q ss_pred HHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhH
Q 041227 1131 EALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTE 1172 (1468)
Q Consensus 1131 e~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~ 1172 (1468)
.+=++.+. ++-..+ |+|..||..-..++..+..++..+
T Consensus 362 qDK~AEle--vERv~s--ktLQ~ELsrAqea~~~lqqq~~~a 399 (739)
T PF07111_consen 362 QDKAAELE--VERVGS--KTLQAELSRAQEARRRLQQQTASA 399 (739)
T ss_pred hHHHHHHH--HHHHhh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 111111 356666666666666666555444
No 256
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=47.03 E-value=73 Score=31.50 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=58.0
Q ss_pred cccccchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHh
Q 041227 869 EFKSDVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLR 935 (1468)
Q Consensus 869 e~e~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~ 935 (1468)
.||.+|+..-..+..-.-||+-||.++..-.+|+..++..+.+|+.....|+.|...-.+++-.++.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666677889999999999999999999999999999999999999999999877764
No 257
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=46.89 E-value=34 Score=33.42 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=20.8
Q ss_pred hhhhheeeEE-ec-cCCCccccceeeechhh
Q 041227 64 IEECLIKLVV-TM-GSSRSGIVGEALVNLAS 92 (1468)
Q Consensus 64 ~~EKIYKfVV-Sm-GSSRSgiLGEasINLAd 92 (1468)
+.+....|-| .- +.++..+||.+.|.+++
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 4455566656 22 44578899999999998
No 258
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=46.80 E-value=1.7e+02 Score=37.26 Aligned_cols=98 Identities=27% Similarity=0.240 Sum_probs=62.7
Q ss_pred HHHHhHH-HHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhh-------HHH
Q 041227 1041 EMEAQKV-ETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHC-------AVL 1112 (1468)
Q Consensus 1041 e~e~qk~-~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~-------t~l 1112 (1468)
+++.|.+ +.-+.+.+.-.+-.-.|++..-.--.|..+|--.-.|.-+.-.+|+-.-.++++|.+|-.|. .+|
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql 273 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQL 273 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4455555 55555555555555555555555444445555555566666667777777788888877665 467
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHH
Q 041227 1113 EAQLGESEKGFSSLSMKVEALEEKYL 1138 (1468)
Q Consensus 1113 E~kL~eS~~~f~~~~k~Ve~LE~kl~ 1138 (1468)
++++.|-+.++++|+--...=|+.|-
T Consensus 274 ~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 274 TAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776666655543
No 259
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=45.26 E-value=4.5e+02 Score=35.04 Aligned_cols=193 Identities=22% Similarity=0.247 Sum_probs=117.0
Q ss_pred HHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhh
Q 041227 1086 EECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKH 1165 (1468)
Q Consensus 1086 eec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~ 1165 (1468)
+.-..||.-.-+.++||--.+.+.|-+|..+...++--.+....+..||..|. .=..++.-...-|+-.
T Consensus 49 e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~La-----------nkda~lrq~eekn~sl 117 (916)
T KOG0249|consen 49 EMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELA-----------NKDADLRQNEEKNRSL 117 (916)
T ss_pred HHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHh-----------CcchhhchhHHhhhhh
Confidence 34467888889999999999999999999999999999999999999999887 3444555555555555
Q ss_pred cchhhhHHHHHHH-hhhhhHHHhh-hHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhh
Q 041227 1166 KDKSVTEESLLNQ-MYMEKTVEAQ-NLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLS 1243 (1468)
Q Consensus 1166 ~ek~~~~~~llnq-~~~Ek~veve-nLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~ 1243 (1468)
.+++..++-=|-+ +-.|+.-+|+ .|++-+.-+|++= ...+ ++.-=.-.|+...-.+-+.|+.+.-+++..
T Consensus 118 qerLelaE~~l~qs~rae~lpeveael~qr~~al~~ae----e~~~----~~eer~~kl~~~~qe~naeL~rarqreemn 189 (916)
T KOG0249|consen 118 QERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAE----EHSG----NIEERTRKLEEQLEELNAELQRARQREKMN 189 (916)
T ss_pred hHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHH----Hhhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555544433322 3356666664 3666666666542 1111 111112345555555666666665555544
Q ss_pred hcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhh
Q 041227 1244 ESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFR 1297 (1468)
Q Consensus 1244 es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk 1297 (1468)
+.--..|-.-....++--..++.|+.+.-+.|.-..+-+.+-++...--+++|+
T Consensus 190 eeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~ 243 (916)
T KOG0249|consen 190 EEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLR 243 (916)
T ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332222222223455555556666666666666655555555555544444443
No 260
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=44.42 E-value=44 Score=34.45 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=23.7
Q ss_pred CccccceeeechhhhccccCccceeeccCCC
Q 041227 79 RSGIVGEALVNLASYMNSKTSVPLTLPLKKC 109 (1468)
Q Consensus 79 RSgiLGEasINLAdYaeAtkP~sVSLPLK~c 109 (1468)
+..+||++.|++++..... .....+||..-
T Consensus 83 ~dd~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 112 (126)
T cd08379 83 PDVLIGKVRIRLSTLEDDR-VYAHSYPLLSL 112 (126)
T ss_pred CCceEEEEEEEHHHccCCC-EEeeEEEeEeC
Confidence 7899999999999976544 36788898743
No 261
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.31 E-value=64 Score=34.36 Aligned_cols=58 Identities=26% Similarity=0.408 Sum_probs=34.3
Q ss_pred HHHHHHhhcCchhHHHhhhhhhHHHhhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1400 LQEKVLRLEGDLAAIEALGSQEAALKNELAQIRRE--NSQFQRRIKCLEKEKEDCLSRAQAIE 1460 (1468)
Q Consensus 1400 leeKl~rle~dl~a~ea~~~~~aelk~el~ri~r~--n~e~q~ki~~le~E~ee~~~r~q~lE 1460 (1468)
|+..+..|...+..-.+-+. .|..||+.++.. |.++...|..|++|+..+..|++.|.
T Consensus 77 ld~ei~~L~~el~~l~~~~k---~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVK---SLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333 555566666554 66777777777777777777777664
No 262
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.94 E-value=1.3e+02 Score=37.57 Aligned_cols=81 Identities=27% Similarity=0.331 Sum_probs=44.6
Q ss_pred hhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Q 041227 974 ELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKL 1053 (1468)
Q Consensus 974 eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~ 1053 (1468)
-|+|.+.--|-|++++++ ..+.+..+++..++-|-.++.-. ...+++-+.-+.+++
T Consensus 329 qleSqr~y~e~~~~e~~q------sqlen~k~~~e~~~~e~~~l~~~------------------~~~~e~~kk~~e~k~ 384 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQ------SQLENQKQYYELLITEADSLKQE------------------SSDLEAEKKIVERKL 384 (493)
T ss_pred hhhHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHhhhhh------------------hhHHHHHHHHHHHHH
Confidence 344555555578888876 33334444444444443332222 234555555566667
Q ss_pred HHHHHhHhhhhhhhhHHhhcCchhh
Q 041227 1054 QDMQKRWLGVQEECEYLKVANPKLQ 1078 (1468)
Q Consensus 1054 qe~q~~wse~Qee~e~Lr~~N~kLQ 1078 (1468)
+..|.+.-.+|.+...+|--|-+|+
T Consensus 385 ~q~q~k~~k~~kel~~~~E~n~~l~ 409 (493)
T KOG0804|consen 385 QQLQTKLKKCQKELKEEREENKKLI 409 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666777777775555443
No 263
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=43.20 E-value=1.7e+02 Score=33.64 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=43.5
Q ss_pred HhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhcccc
Q 041227 311 LMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLK 371 (1468)
Q Consensus 311 l~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk 371 (1468)
.+.++-.+|+++.- -..-|...++.|-+.||-|+|++|+++-+-+.+..+..+|.
T Consensus 99 Q~~~f~kiRsel~S------~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLd 153 (220)
T KOG3156|consen 99 QKVDFAKIRSELVS------IERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLD 153 (220)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceee
Confidence 45677788888875 34568999999999999999999999877666666666554
No 264
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=43.19 E-value=32 Score=33.95 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=32.0
Q ss_pred hhhhhhheeeEE-ec-cCCCccccceeeechhhhccccCccceeeccC
Q 041227 62 KEIEECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLK 107 (1468)
Q Consensus 62 kk~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK 107 (1468)
..+..+...|.| .- ..++..+||++.|++++..... +.+.-+||+
T Consensus 77 ~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-~~~~W~~l~ 123 (124)
T cd08387 77 QELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-KLDLWRKIQ 123 (124)
T ss_pred HHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCC-CcceEEECc
Confidence 344566667777 22 3457889999999999997554 567777765
No 265
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.13 E-value=5.7e+02 Score=29.10 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=69.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhh
Q 041227 1027 HAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLH 1106 (1468)
Q Consensus 1027 ~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh 1106 (1468)
.+.+...+.-+........+..+...-+.++.+.--+..+-+.|+.-|.+|++.+.++-.+..+|+...+.+..-+-++-
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555666666666667777889999999999999999999999999999999998888
Q ss_pred hhhHHHHHHhhh
Q 041227 1107 EHCAVLEAQLGE 1118 (1468)
Q Consensus 1107 ~~~t~lE~kL~e 1118 (1468)
.-...|-..|.+
T Consensus 105 p~m~~m~~~L~~ 116 (251)
T PF11932_consen 105 PLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHH
Confidence 888888877765
No 266
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=41.89 E-value=72 Score=31.81 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=40.3
Q ss_pred heeeEEe-c-cCCCccccceeeechhhhccccCccceeeccCCC-----CCCCeEEEEeeeecCC
Q 041227 68 LIKLVVT-M-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKC-----NSGTSLQLKIQCLTPR 125 (1468)
Q Consensus 68 IYKfVVS-m-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~c-----nsGTVLHVtIQ~Lt~k 125 (1468)
...|.|- - +.++..+||.+.|++.+...... ....+||... ....-|||.++...+.
T Consensus 60 ~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 60 ELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPS-GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEEEEEECCCCCCCceEEEEEEeHHHhccCCc-eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 4566662 2 44578999999999999887654 3567999754 2345688888876553
No 267
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=41.78 E-value=61 Score=32.31 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=57.7
Q ss_pred ccccccCC-cc----cee-EEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-ecc-
Q 041227 5 IWELQVPK-GW----DKL-VVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TMG- 76 (1468)
Q Consensus 5 FhATQVP~-Gw----DkL-fVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-SmG- 76 (1468)
+.|-++|. ++ |-. .|.+-|....+...||. ..-.+-++.|...++=.+.. +. .+....|.| ...
T Consensus 20 ~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~-v~~~~~~P~wne~f~~~~~~------~~-~~~~l~v~v~d~~~ 91 (131)
T cd04026 20 REAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTK-TIKKTLNPVWNETFTFDLKP------AD-KDRRLSIEVWDWDR 91 (131)
T ss_pred EEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecce-eecCCCCCCccceEEEeCCc------hh-cCCEEEEEEEECCC
Confidence 45667773 22 222 23333322223444443 33334466666655443321 11 134455555 332
Q ss_pred CCCccccceeeechhhhccccCccceeeccCCCCCCCeEEE
Q 041227 77 SSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTSLQL 117 (1468)
Q Consensus 77 SSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGTVLHV 117 (1468)
..+..+||.+.|++++.... +..--.||.+-.+|.+-.|
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~~~~~~~~ 130 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM--PVDGWYKLLNQEEGEYYNV 130 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC--ccCceEECcCccccccccC
Confidence 24678999999999999865 6777889988888876543
No 268
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=41.74 E-value=7.2e+02 Score=31.58 Aligned_cols=49 Identities=24% Similarity=0.300 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhhhhHHHHHhhhH
Q 041227 292 VKIEELHAEARMWEQNARKLM----TDLEKVQQQSLDQLARQASLEMELSKSH 340 (1468)
Q Consensus 292 ~tIEeLK~E~~~LeR~Adkl~----~ELQtLRKQlakEsKrgqdLs~EvS~Lk 340 (1468)
.++++||+.+.-|-...+-+. .||+.||+.+-.|-+....|.|||..++
T Consensus 569 ~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lk 621 (627)
T KOG4348|consen 569 NSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLK 621 (627)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence 467777777777666665554 5899999999988888888888887665
No 269
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=41.43 E-value=1.3e+02 Score=38.28 Aligned_cols=99 Identities=26% Similarity=0.277 Sum_probs=72.2
Q ss_pred hhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHH
Q 041227 969 ESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVE 1048 (1468)
Q Consensus 969 e~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~ 1048 (1468)
..||.+|=+.++-.+--.-.+..|..-|..|+.-.|. +|++..-++......+..||||..-...--|.|.-.
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~-------ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~ 491 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEK-------EKESLEEELKEANQNISRLQDELETTRRNYEEQLSM 491 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3445555555555554445555666666666555544 455555567777788888888888888888889999
Q ss_pred HHHHHHHHHHhHhhhhhhhhHHhhcC
Q 041227 1049 TKQKLQDMQKRWLGVQEECEYLKVAN 1074 (1468)
Q Consensus 1049 ~kqk~qe~q~~wse~Qee~e~Lr~~N 1074 (1468)
|-.-+-.|..+++.-.|+-+.||.++
T Consensus 492 MSEHLasmNeqL~~Q~eeI~~LK~~~ 517 (518)
T PF10212_consen 492 MSEHLASMNEQLAKQREEIQTLKLAS 517 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999764
No 270
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.15 E-value=1.4e+02 Score=38.65 Aligned_cols=46 Identities=28% Similarity=0.384 Sum_probs=27.9
Q ss_pred HHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 041227 1316 QLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSG 1364 (1468)
Q Consensus 1316 q~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~ 1364 (1468)
++-.++..+.-+++ .|+-|+..|+..+.+.+-+.++|++-|..+..
T Consensus 419 ~~~~~i~~~~~~ve---~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 419 VYEKRIKKLEETVE---RLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665554 45667777777777766666666655544443
No 271
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=40.90 E-value=1.5e+02 Score=28.66 Aligned_cols=34 Identities=38% Similarity=0.485 Sum_probs=29.7
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhh
Q 041227 980 HEMEVHLHELEEENLQLSERICGLEAQLRYLTNE 1013 (1468)
Q Consensus 980 ~elE~hls~Le~En~qLserisgLEaql~~lt~E 1013 (1468)
.+.|-||+.|..||.-|-=||-=||-.|...+++
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~ 36 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPE 36 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccc
Confidence 3678999999999999999999999999865553
No 272
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=40.76 E-value=5.7e+02 Score=30.36 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=65.7
Q ss_pred HHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhh
Q 041227 1041 EMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESE 1120 (1468)
Q Consensus 1041 e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~ 1120 (1468)
-.+.|...+++++.+.+.++.+-|...-.+ -+...+.. .....++|+.| .+.++++|.+.+
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~-----d~~~~~~~-------~~~~i~~L~~~-------l~~~~~~l~~l~ 234 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVF-----DPKAQSSA-------QLSLISTLEGE-------LIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----ChHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 445556666667777777764444333222 11111222 22334444444 555566666666
Q ss_pred hhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHh
Q 041227 1121 KGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQ 1200 (1468)
Q Consensus 1121 ~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~Q 1200 (1468)
.+|.+=.-.|-.|..++..+...|..--+.+..-.. .-...+.++.+.|+||+.-..+.
T Consensus 235 ~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~---------------------~~l~~~~~~~~~L~re~~~a~~~ 293 (362)
T TIGR01010 235 SITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG---------------------DSLNEQTADYQRLVLQNELAQQQ 293 (362)
T ss_pred hhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC---------------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 666665667777887777666665443222221110 12345567788888888764444
Q ss_pred hhh
Q 041227 1201 ISA 1203 (1468)
Q Consensus 1201 iSa 1203 (1468)
..+
T Consensus 294 y~~ 296 (362)
T TIGR01010 294 LKA 296 (362)
T ss_pred HHH
Confidence 333
No 273
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=40.59 E-value=7.3e+02 Score=29.93 Aligned_cols=162 Identities=25% Similarity=0.357 Sum_probs=89.7
Q ss_pred hhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHH-----------
Q 041227 974 ELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEM----------- 1042 (1468)
Q Consensus 974 eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~----------- 1042 (1468)
++-+-++++=-.|.+|..+--++-..+..|=...+.+...+.-+. .+.--+..|+.+|+|++---
T Consensus 59 elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~----~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~ 134 (294)
T COG1340 59 ELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN----LGGRSIKSLEREIERLEKKQQTSVLTPEEER 134 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----ccCCCHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 333344444455666666655665666656666666665555443 33445677788888876522
Q ss_pred --HHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCc---hhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHh-
Q 041227 1043 --EAQKVETKQKLQDMQKRWLGVQEECEYLKVANP---KLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQL- 1116 (1468)
Q Consensus 1043 --e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~---kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL- 1116 (1468)
-....++.++++..++... .|. .|.|-++.+-.+.+.+-+-..+|..|--+.|+..+.+=++.
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e-----------~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~D 203 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALE-----------ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEAD 203 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455555555554331 122 23455566666666666666666666656665555544433
Q ss_pred ------hhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhH
Q 041227 1117 ------GESEKGFSSLSMKVEALEEKYLSMLEEISSKEKA 1150 (1468)
Q Consensus 1117 ------~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~ 1150 (1468)
++.+..|.++.+.+..+-.+|-.++.+|.--++.
T Consensus 204 e~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ 243 (294)
T COG1340 204 ELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKK 243 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666554443
No 274
>PLN03188 kinesin-12 family protein; Provisional
Probab=40.22 E-value=2.4e+02 Score=39.31 Aligned_cols=120 Identities=24% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---------------hhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhh
Q 041227 295 EELHAEARMWEQNARKLMTDLEKVQQQSLDQLA---------------RQASLEMELSKSHAQCDGLKQEIEWLKKLAKE 359 (1468)
Q Consensus 295 EeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsK---------------rgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~ 359 (1468)
++||.|+.+|...|.++..||. .-|.|+.|++ +-+||..--..|-+=.-...+=|...|.--.+
T Consensus 1068 eelr~eles~r~l~Ekl~~EL~-~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaak 1146 (1320)
T PLN03188 1068 EELRTELDASRALAEKQKHELD-TEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAAR 1146 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhccccccccChhHHHHHHHHHHhhhhhhchhHHHhHhhhhhhhHHHHHHHHHH
Q 041227 360 SEVQSTATENLKFQARDTDKKINELEDEIKFQKESNANLAIQLNKTQESNIELISILQEL 419 (1468)
Q Consensus 360 ~~~~q~~~~~lk~e~eD~~~lleELrdEL~yEKE~NaNL~LQLqKTQESN~ELVlaVQDL 419 (1468)
.-++...+.=...=.-..-.+-=|=+.|-.|.|+-|..|+.||.-| +|-|-|-.+|
T Consensus 1147 ag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdt----aeav~aagel 1202 (1320)
T PLN03188 1147 AGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDT----AEAVQAAGEL 1202 (1320)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhH----HHHHHHHHHH
No 275
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.07 E-value=3.1e+02 Score=31.16 Aligned_cols=64 Identities=14% Similarity=0.320 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhH
Q 041227 297 LHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKES 360 (1468)
Q Consensus 297 LK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~ 360 (1468)
....+..|......+..++..|.+|+..-......+.+-|.....+.+.|.+.++++.....++
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677888888888888888888888888888999999999999999999999888776653
No 276
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=39.75 E-value=56 Score=32.83 Aligned_cols=60 Identities=10% Similarity=0.147 Sum_probs=35.0
Q ss_pred ccccchhcccccCcchhhhhhhheeeEE-e-ccCCCccccceeeechhhhccccCccceeecc
Q 041227 46 IETFSESIWIPQDNALKEIEECLIKLVV-T-MGSSRSGIVGEALVNLASYMNSKTSVPLTLPL 106 (1468)
Q Consensus 46 edPIyETvkl~qD~KTkk~~EKIYKfVV-S-mGSSRSgiLGEasINLAdYaeAtkP~sVSLPL 106 (1468)
.+|+|--+=...-......+....+|.| . -+.++..+||++.|+|+++... .+.+.-+||
T Consensus 60 ~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~-~~~~~W~~L 121 (122)
T cd08381 60 RNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLS-QETEKWYPL 121 (122)
T ss_pred CCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccC-CCccceEEC
Confidence 5666644422221122235566777777 2 2345789999999999997743 334444444
No 277
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=39.12 E-value=6.4e+02 Score=28.85 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhh
Q 041227 1048 ETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLS 1127 (1468)
Q Consensus 1048 ~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~ 1127 (1468)
++.+..+.++....+.-++-.+|-..+. ......+-....--+....+||... +-.+-..-+.+|++++.-....-
T Consensus 91 ~L~~~i~~l~~~i~~l~~~~~~l~~~~~--~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~ 166 (264)
T PF06008_consen 91 DLEQFIQNLQDNIQELIEQVESLNENGD--QLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQ 166 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccC--CCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433111 2222344444444555666777775 55555566677777766444333
Q ss_pred h
Q 041227 1128 M 1128 (1468)
Q Consensus 1128 k 1128 (1468)
+
T Consensus 167 ~ 167 (264)
T PF06008_consen 167 K 167 (264)
T ss_pred H
Confidence 3
No 278
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=39.02 E-value=1.2e+02 Score=30.47 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=36.7
Q ss_pred eeeEEec--cCCCccccceeeechhhhccccCccceeeccCCCCC-----CCeEEEEeeee
Q 041227 69 IKLVVTM--GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNS-----GTSLQLKIQCL 122 (1468)
Q Consensus 69 YKfVVSm--GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cns-----GTVLHVtIQ~L 122 (1468)
+.|.|-- ..++..++|++.|.|+++.. ......-+||...+. +.-|||.++..
T Consensus 64 l~v~v~d~~~~~~d~~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 64 FTISLSNKAKRSKDSEIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred EEEEEEECCCCCCCCeEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 4455522 34678999999999999876 444677888876532 25678877654
No 279
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=38.87 E-value=1.4e+02 Score=33.01 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=38.7
Q ss_pred HHHHHHHhhhhcchhhhHHHHHHHhhhhhHHH--------hhhHHHHHHHHHHhhhhhhcc
Q 041227 1155 LDALLHENRKHKDKSVTEESLLNQMYMEKTVE--------AQNLQREVAHLTEQISATYDE 1207 (1468)
Q Consensus 1155 Le~l~qE~~~~~ek~~~~~~llnq~~~Ek~ve--------venLqrEv~~Lt~QiSat~de 1207 (1468)
+|++..--..+-..+.-+-..+.++++.+... |++|++++..++++.+.++.+
T Consensus 10 ~da~w~~~~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~ 70 (165)
T PF09602_consen 10 MDAFWKQWSQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEE 70 (165)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666666777666554 899999999999999998876
No 280
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.70 E-value=9.3e+02 Score=30.60 Aligned_cols=165 Identities=24% Similarity=0.251 Sum_probs=105.1
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHH----------HHhHHH
Q 041227 979 KHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEM----------EAQKVE 1048 (1468)
Q Consensus 979 K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~----------e~qk~~ 1048 (1468)
+-.++..+--|+.||-+|-..|..|=++...|.+|+--+-=+++..+-+++-.|+...||--.. +--+.|
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELiee 378 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEE 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445678999999999999999999999999999997777778888878887777766553211 111223
Q ss_pred HHHHHHHHHHhHhhhhhhhhHHhhcCchh---hhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhh
Q 041227 1049 TKQKLQDMQKRWLGVQEECEYLKVANPKL---QATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSS 1125 (1468)
Q Consensus 1049 ~kqk~qe~q~~wse~Qee~e~Lr~~N~kL---QaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~ 1125 (1468)
+-..++-.|++-+ -.+||-- -|-..-|-+|.+-|.--|--|+.|+.+|||..--+-..
T Consensus 379 lrkelehlr~~kl---------~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls~q---------- 439 (502)
T KOG0982|consen 379 LRKELEHLRRRKL---------VLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQ---------- 439 (502)
T ss_pred HHHHHHHHHHHHH---------HhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHH----------
Confidence 3333333333221 1122211 14455677888888888999999999999987665432
Q ss_pred hhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhh
Q 041227 1126 LSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKH 1165 (1468)
Q Consensus 1126 ~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~ 1165 (1468)
|.+..-+.-.++-|+.-+|..- ...+|--.||+..+-
T Consensus 440 ~lkn~ha~~~~~~Slaaeid~~---sqdeLmqafqeqeei 476 (502)
T KOG0982|consen 440 FLKNWHATFSLFFSLAAEIDEM---SQDELMQAFQEQEEI 476 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHh
Confidence 3344445556666666555531 233455555554443
No 281
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=38.19 E-value=58 Score=32.06 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=27.5
Q ss_pred hhhhhheeeEEe-ccC---CCccccceeeechhhhccccCccceeecc
Q 041227 63 EIEECLIKLVVT-MGS---SRSGIVGEALVNLASYMNSKTSVPLTLPL 106 (1468)
Q Consensus 63 k~~EKIYKfVVS-mGS---SRSgiLGEasINLAdYaeAtkP~sVSLPL 106 (1468)
.+.....+|-|- .+. ++..++|+|.|++++.... ...+--+||
T Consensus 80 ~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~-~~~~~W~~L 126 (127)
T cd04030 80 ELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLS-KGFTQWYDL 126 (127)
T ss_pred HhcCCEEEEEEEECCcccCCCCceEEEEEEeccccccc-CCccceEEC
Confidence 344566666663 222 5789999999999997443 334444444
No 282
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=38.08 E-value=6.8e+02 Score=28.81 Aligned_cols=130 Identities=20% Similarity=0.304 Sum_probs=71.3
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHH---hhccc-----hhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcch-
Q 041227 909 QNELENQISDLQKEKSQLEESIEIML---REGTV-----ASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSK- 979 (1468)
Q Consensus 909 k~ElE~~is~lq~Ek~qLee~~e~~~---~e~~i-----~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K- 979 (1468)
--|-+..+-.|.+---++||.|++.- ++... ..||=.-.| -|.+..+.+.+-. .+ +|++-++
T Consensus 41 ~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar-kL~iiE~dLE~~e-------er-aE~~Es~~ 111 (205)
T KOG1003|consen 41 ADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR-KLVIIEGELERAE-------ER-AEAAESQS 111 (205)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHH-------HH-HHHHHHHH
Confidence 35556677777888888888887653 33211 123322222 2444433333221 11 1221111
Q ss_pred hhhh-------hhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHH
Q 041227 980 HEME-------VHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKV 1047 (1468)
Q Consensus 980 ~elE-------~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~ 1047 (1468)
.+|+ ..+--|+.-+..++.+--..+.+++++|+=---...--+-.+-.|..|+.+|.+++-.....+.
T Consensus 112 ~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 112 EELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence 2222 2233456667778888999999999999844444444444556677788888766655544443
No 283
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=37.89 E-value=8.6e+02 Score=29.97 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhH
Q 041227 1029 MSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEY 1069 (1468)
Q Consensus 1029 ~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~ 1069 (1468)
..+...+.++++...++...+......++.+...++.+-.-
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 190 (457)
T TIGR01000 150 ESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQD 190 (457)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555444444333
No 284
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.85 E-value=2.4e+02 Score=32.50 Aligned_cols=45 Identities=27% Similarity=0.458 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhH
Q 041227 882 LEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQL 926 (1468)
Q Consensus 882 ~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qL 926 (1468)
-.+..+..++++.+..--+.++.-..+-.|+.+.+..|..|+...
T Consensus 7 r~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h 51 (230)
T PF10146_consen 7 RNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAH 51 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666665555555555555555555555555555544
No 285
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=37.46 E-value=1.2e+02 Score=36.53 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhh
Q 041227 1257 KIQQLKSELAAARQNQEVLMADHEKLLNLLEDV 1289 (1468)
Q Consensus 1257 ki~~l~~~L~askqn~emL~~d~ek~~~lle~~ 1289 (1468)
|++=+.-.+|..+.|.+....+-..-...+..|
T Consensus 278 rL~L~~AqlAlL~~~~~~y~~sL~~A~~wl~~y 310 (372)
T PF04375_consen 278 RLRLEQAQLALLRRDQELYQQSLQRAQQWLNRY 310 (372)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 444455566777777777777666666666665
No 286
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=37.23 E-value=81 Score=32.95 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=50.1
Q ss_pred ccccccccCCcc----ce-eEEEEEEcccC--------cccccccccccccCcccc-ccccchhcccccCcchhhhhhhh
Q 041227 3 SVIWELQVPKGW----DK-LVVSVVLVETG--------KTIAKSSKAPVRNGNCRW-IETFSESIWIPQDNALKEIEECL 68 (1468)
Q Consensus 3 sqFhATQVP~Gw----Dk-LfVSiVp~DtG--------KtTAKteKA~VRnG~CrW-edPIyETvkl~qD~KTkk~~EKI 68 (1468)
+++.|..+|.+| |- ..|++.|.+.- .... .++..-.+-+..| ...+.=.+ . ...+
T Consensus 6 ~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~-kT~v~~~tlnP~W~nE~f~f~v----~------~~~~ 74 (137)
T cd08691 6 SGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQEC-RTSIVENTINPVWHREQFVFVG----L------PTDV 74 (137)
T ss_pred EEEEeCCCCCccCCCCCceEEEEEECCCccccccccccccee-eeeeEcCCCCCceEceEEEEEc----C------CCCE
Confidence 456788888533 33 55666655432 1122 2222233335666 43332222 1 1124
Q ss_pred eeeEEec--cCCC---ccccceeeechhhhcccc--CccceeeccC
Q 041227 69 IKLVVTM--GSSR---SGIVGEALVNLASYMNSK--TSVPLTLPLK 107 (1468)
Q Consensus 69 YKfVVSm--GSSR---SgiLGEasINLAdYaeAt--kP~sVSLPLK 107 (1468)
..|-|-- +.++ ..+||.+.|++++++... ....++.||.
T Consensus 75 L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~ 120 (137)
T cd08691 75 LEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG 120 (137)
T ss_pred EEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC
Confidence 5555522 2233 479999999999998663 3366677773
No 287
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.22 E-value=2.3e+02 Score=32.59 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHH
Q 041227 1188 QNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLK 1262 (1468)
Q Consensus 1188 enLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~ 1262 (1468)
+..+++-..+..++-..-. -.-|-..+-||..+|+.+++.-+.++...+++.+.|++-++..-+.+-
T Consensus 130 ~~~~~~~~~lk~~~~~~~~--------~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK--------LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred HHHHHHHHHHHHhhhcccc--------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 4445555555555433221 334567788999999999999999999999999999988887776665
No 288
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=37.02 E-value=8e+02 Score=29.30 Aligned_cols=130 Identities=22% Similarity=0.209 Sum_probs=83.9
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhh
Q 041227 985 HLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQ 1064 (1468)
Q Consensus 985 hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Q 1064 (1468)
|.-..-.|..+.-+--..+||.|. -||+..++.-..|+....||..|.++-|.-+.- |-.|.--
T Consensus 28 ~f~~~reEl~EFQegSrE~Eaele----------sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~--q~~q~y~---- 91 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELE----------SQLDQLETRNRDLETRNQRLTTEQERNKEKQED--QRVQFYQ---- 91 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH----
Confidence 333334444444444444555542 245556777788888888888888776543221 2222111
Q ss_pred hhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 041227 1065 EECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYL 1138 (1468)
Q Consensus 1065 ee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~ 1138 (1468)
--+.|++-|+.+.|--|.|-+-.--|...|++|..-|-+-.--..-+|++|.++-.+ .-|||-.|.
T Consensus 92 -q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIEr-------nAfLESELd 157 (333)
T KOG1853|consen 92 -QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIER-------NAFLESELD 157 (333)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHhh
Confidence 235688888888888887777777788888888777766666677889999988655 456776665
No 289
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.92 E-value=1.1e+03 Score=30.91 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhh
Q 041227 288 EAAEVKIEELHAEARMWEQNARKLMTD-LEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTA 366 (1468)
Q Consensus 288 eaAE~tIEeLK~E~~~LeR~Adkl~~E-LQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~ 366 (1468)
..|+.++++||.|+..|.+--+....+ .|.--=-++ =.....+|...+-.+..|-|..|.|+++++--..++...++.
T Consensus 4 ~~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~-lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk 82 (772)
T KOG0999|consen 4 PMAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLE-LLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKK 82 (772)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999998876432222211 111000010 022234555666667788888888888888777665554443
Q ss_pred hccccccccChhHHHHHHHHHHhhhhhhchhHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 041227 367 TENLKFQARDTDKKINELEDEIKFQKESNANLAIQLNKTQESNIELISILQELEETLAKQKMEIEDL 433 (1468)
Q Consensus 367 ~~~lk~e~eD~~~lleELrdEL~yEKE~NaNL~LQLqKTQESN~ELVlaVQDLEEmLEqk~~EIs~L 433 (1468)
..+--.+.++ .++.|= -+ --..++.-+=+|+--|-|.+.+..+.
T Consensus 83 ~~~~g~e~Ee--sLLqES----------aa-----------kE~~yl~kI~eleneLKq~r~el~~~ 126 (772)
T KOG0999|consen 83 VARDGEEREE--SLLQES----------AA-----------KEEYYLQKILELENELKQLRQELTNV 126 (772)
T ss_pred hhccchhhHH--HHHHHH----------HH-----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222222 222221 00 01345555667777777777776653
No 290
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.81 E-value=1.8e+02 Score=33.13 Aligned_cols=144 Identities=22% Similarity=0.269 Sum_probs=88.4
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHH-HHHH
Q 041227 1186 EAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQ-LKSE 1264 (1468)
Q Consensus 1186 evenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~-l~~~ 1264 (1468)
-+.+|..|+..+.+||+-| |+.-+-+||.- -|| .|=-|-+-||+|.+.|.-.|=..=+- ++
T Consensus 34 KIskLDaeL~k~~~Qi~k~---R~gpaq~~~Kq------------rAl-rVLkQKK~yE~q~d~L~~QsfNMeQa~~t-- 95 (218)
T KOG1655|consen 34 KISKLDAELCKYKDQIKKT---RPGPAQNALKQ------------RAL-RVLKQKKMYENQKDSLDQQSFNMEQANFT-- 95 (218)
T ss_pred HHHHHHHHHHHHHHHHHhc---CCCcchhHHHH------------HHH-HHHHHHHHHHHHHHHHHHhcccHHHHHHH--
Confidence 4679999999999999999 88888887742 122 35557788999999998665443221 11
Q ss_pred HHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q 041227 1265 LAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKL 1344 (1468)
Q Consensus 1265 L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~s 1344 (1468)
+.+=+| -|-++ .-+|.+.+++-..+| +|-+++|.-||||+..+=..
T Consensus 96 -~e~LKd-tq~Tv----------------~AmK~~~k~mK~~yk----------------kvnId~IedlQDem~Dlmd~ 141 (218)
T KOG1655|consen 96 -AESLKD-TQATV----------------AAMKDTNKEMKKQYK----------------KVNIDKIEDLQDEMEDLMDQ 141 (218)
T ss_pred -HHHHHH-HHHHH----------------HHHHHHHHHHHHHHc----------------cCCHHHHHHHHHHHHHHHHH
Confidence 001111 01111 123344444433333 57789999999999998777
Q ss_pred HHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHH
Q 041227 1345 LNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQ 1384 (1468)
Q Consensus 1345 L~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q 1384 (1468)
-+|++--.|| ++-+---+-.+|-|+=..+.+....+.
T Consensus 142 a~EiQE~Lgr---~y~~peide~dL~aELdaL~~E~d~~~ 178 (218)
T KOG1655|consen 142 ADEIQEVLGR---NYNTPDIDEADLDAELDALGQELDMLE 178 (218)
T ss_pred HHHHHHHHhh---ccCCCCcCHHHHHHHHHHHHhHhhccc
Confidence 7777654443 444443455666666666655544443
No 291
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=35.23 E-value=61 Score=33.36 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=43.3
Q ss_pred cCccccccccchhcccccCcc-------hhhhhhhheeeEEe-c-cCCCccccceeeechhhhccccCccceeeccCCC
Q 041227 40 NGNCRWIETFSESIWIPQDNA-------LKEIEECLIKLVVT-M-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKC 109 (1468)
Q Consensus 40 nG~CrWedPIyETvkl~qD~K-------Tkk~~EKIYKfVVS-m-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~c 109 (1468)
+-+..|...++=.+....+.+ +..+.....+|.|= - +..+..++|++.|.+.+... ..+...-+||+..
T Consensus 44 t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~-~~~~~~W~~L~~~ 121 (137)
T cd08675 44 TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQ-AGSHQAWYFLQPR 121 (137)
T ss_pred CCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccC-CCcccceEecCCc
Confidence 335667776665555543222 12334556667662 2 33579999999999999874 3456777888544
No 292
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=35.20 E-value=4.3e+02 Score=25.63 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=8.8
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHH
Q 041227 1093 KSNAELRKQKVNLHEHCAVLEAQ 1115 (1468)
Q Consensus 1093 ~~~~eLr~qklelh~~~t~lE~k 1115 (1468)
+....++...-.+......++..
T Consensus 7 ~~l~~l~~~~~~~~~~~~~l~~~ 29 (127)
T smart00502 7 ELLTKLRKKAAELEDALKQLISI 29 (127)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333443333333333333333
No 293
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=34.96 E-value=1.8e+02 Score=29.28 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=43.8
Q ss_pred hcchhhhhhhHHHHHHHHHHHHHH-HhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhh
Q 041227 1244 ESNLGTLRMESQTKIQQLKSELAA-ARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEIS 1322 (1468)
Q Consensus 1244 es~l~~l~~Es~~ki~~l~~~L~a-skqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s 1322 (1468)
+.++++.+.|-...|..++.+|-+ .+-.||. =+..| =||=|-++.+.+++|+...+ .+..|+-
T Consensus 3 ~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~-------KV~~L--KksYe~rwek~v~~L~~e~~-------~l~~E~e 66 (87)
T PF12709_consen 3 KKKLEESQKEVEKAVEKVARELHALYSSKHET-------KVKAL--KKSYEARWEKKVDELENENK-------ALKRENE 66 (87)
T ss_pred HhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHH--HhhHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 345566677777777777777744 4444443 22222 24667778888888877666 5555555
Q ss_pred hhHHHHHHHhh
Q 041227 1323 SLKVQLERTAQ 1333 (1468)
Q Consensus 1323 ~LkvQlqk~~~ 1333 (1468)
.|+.||..-..
T Consensus 67 ~L~~~l~~e~~ 77 (87)
T PF12709_consen 67 QLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHH
Confidence 55554444333
No 294
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=34.95 E-value=60 Score=31.95 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=26.8
Q ss_pred hhhhheeeEE-ec-cCCCccccceeeechhhhccccCccceeecc
Q 041227 64 IEECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPL 106 (1468)
Q Consensus 64 ~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPL 106 (1468)
...+..+|-| .- ..++..+||++.|.++++.. ..+.+.=.||
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~l 123 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL-TEEQTFWKDL 123 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccC-CCCcceEEec
Confidence 3445566655 22 34567899999999998764 4444444444
No 295
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.36 E-value=1.2e+03 Score=30.56 Aligned_cols=140 Identities=18% Similarity=0.221 Sum_probs=83.9
Q ss_pred cccccchhhhhhcccchhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh----hhhhhhhhhhhHHHHHHhH---H
Q 041227 476 EHPIRDLNAKIEQQDDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEM----ERHLKTQTLMHYEAEWRSR---I 548 (1468)
Q Consensus 476 E~kI~dL~~eIEl~D~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~----~~~~~~q~l~~~e~e~~~k---l 548 (1468)
|.+|.-|.+ -..+|.++.--.+++-.--.|.|.-+|..|+..+.++....-+ ..+|. -+.+.-..+..+. |
T Consensus 312 er~IerLke-qr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLa-s~glk~ds~Lk~leIal 389 (654)
T KOG4809|consen 312 ERIIERLKE-QRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLA-SAGLKRDSKLKSLEIAL 389 (654)
T ss_pred HHHHHHhcc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhHHHHHH
Confidence 444444443 2234555555578888888899999999999999888764332 22222 2223333332222 4
Q ss_pred hHHHHhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhc
Q 041227 549 AEKEENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLALLFKLKESG 620 (1468)
Q Consensus 549 s~kE~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~ 620 (1468)
--|-++|..++.-|--+-++.--. --|.+-.++++.++.-.-.+.++=+-..-+-|+||+++.-.+.-+
T Consensus 390 EqkkEec~kme~qLkkAh~~~dda---r~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK 458 (654)
T KOG4809|consen 390 EQKKEECSKMEAQLKKAHNIEDDA---RMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK 458 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhh---hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556677777777777666553321 123334567777666555555555555678899999976655433
No 296
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=34.36 E-value=60 Score=32.03 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=22.0
Q ss_pred hhheeeEE-eccCCCccccceeeechhhhccc
Q 041227 66 ECLIKLVV-TMGSSRSGIVGEALVNLASYMNS 96 (1468)
Q Consensus 66 EKIYKfVV-SmGSSRSgiLGEasINLAdYaeA 96 (1468)
....+|-| ..+..+..++|++.|.+++....
T Consensus 83 ~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 83 RKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred CCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 34555544 55544788999999999987654
No 297
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=34.31 E-value=85 Score=30.98 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=38.4
Q ss_pred CcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEEe-c-cCCCccccceeeechhhhccccCccceee
Q 041227 27 GKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVVT-M-GSSRSGIVGEALVNLASYMNSKTSVPLTL 104 (1468)
Q Consensus 27 GKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVVS-m-GSSRSgiLGEasINLAdYaeAtkP~sVSL 104 (1468)
|....||. ..-.+.++.|...+.=.+.. +. .....|.|= - ..++..++|.+.+++++...... ...-+
T Consensus 30 ~~~~~kT~-v~~~t~nP~Wne~f~f~~~~---~~-----~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~-~~~w~ 99 (123)
T cd04025 30 NGQTLETS-VVKKSCYPRWNEVFEFELME---GA-----DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQ-EEGWF 99 (123)
T ss_pred CCEEEece-eecCCCCCccCcEEEEEcCC---CC-----CCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCC-CCCEE
Confidence 43444442 33345566776655433322 11 344556552 2 23457899999999999875432 34445
Q ss_pred ccC
Q 041227 105 PLK 107 (1468)
Q Consensus 105 PLK 107 (1468)
+|.
T Consensus 100 ~L~ 102 (123)
T cd04025 100 RLL 102 (123)
T ss_pred ECC
Confidence 554
No 298
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=33.98 E-value=1.1e+03 Score=29.98 Aligned_cols=168 Identities=23% Similarity=0.199 Sum_probs=89.5
Q ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHhHHhHHHHhHHHHHHHHHHHHHHh
Q 041227 490 DDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAEWRSRIAEKEENIVNLEAKLSEVLCAQ 569 (1468)
Q Consensus 490 D~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e~~~kls~kE~eI~~L~~KL~~~~~~~ 569 (1468)
.+-.|||.++|-|| |+=+-|..|...+++.+.++..+|.+...+ -+.|+++|-.-..+
T Consensus 144 ek~~lEq~leqeqe----------f~vnKlm~ki~Klen~t~~kq~~leQLRre-----------~V~lentlEQEqEa- 201 (552)
T KOG2129|consen 144 EKLPLEQLLEQEQE----------FFVNKLMNKIRKLENKTLLKQNTLEQLRRE-----------AVQLENTLEQEQEA- 201 (552)
T ss_pred hhccHHHHHHHHHH----------HHHHHHHHHHHHhhhhhHHhhhhHHHHHHH-----------HHHHhhHHHHHHHH-
Confidence 56778999999887 556667777777777777766666665543 23344333211100
Q ss_pred hhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhccccccCCCCCCCCCCCCccccchhHHHHH
Q 041227 570 ALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLALLFKLKESGKDLLTGGASSHECPDNKSVFESESEVVQL 649 (1468)
Q Consensus 570 ~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~~~~~~~~~s~~~~~~~~~~~~~es~~~~l 649 (1468)
=+-.|-.+++-||.|.. -|-.||-+ -+.+-+..--|.++-.+.+ .+-.-+
T Consensus 202 -----------------lvN~LwKrmdkLe~ekr-------~Lq~KlDq-----pvs~p~~prdia~~~~~~g-D~a~~~ 251 (552)
T KOG2129|consen 202 -----------------LVNSLWKRMDKLEQEKR-------YLQKKLDQ-----PVSTPSLPRDIAKIPDVHG-DEAAAE 251 (552)
T ss_pred -----------------HHHHHHHHHHHHHHHHH-------HHHHHhcC-----cccCCCchhhhhcCccccC-chHHHH
Confidence 02345567777777776 23345532 2222222222222211111 123345
Q ss_pred hHhHhhhHHHHHHHHHHHHhhhhcccccchHH----HHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHH
Q 041227 650 KSQICKLEEELQERNALIERLSTYENRSDDLE----NQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQL 719 (1468)
Q Consensus 650 ~~q~~~leee~~~~~~~~~~~~~~~~k~~dle----l~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l 719 (1468)
+.+|++|-.|.-. |..-|+.-+ -++..|+-...+.+++.-..|+.|...-..-.||=..|
T Consensus 252 ~~hi~~l~~EveR----------lrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~l 315 (552)
T KOG2129|consen 252 KLHIDKLQAEVER----------LRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRML 315 (552)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888775444322 222232222 34667788888888777777776655444444454444
No 299
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.82 E-value=2.2e+02 Score=28.22 Aligned_cols=67 Identities=25% Similarity=0.350 Sum_probs=46.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhh---hchHHHHHHHhhHHHhhhhHHHHHhhhhhh
Q 041227 1327 QLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILS---GDYEELKAERISFMQKISTSQQVVSELDDC 1393 (1468)
Q Consensus 1327 Qlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S---~e~eeLkaek~~~~~kis~~q~~~seled~ 1393 (1468)
-|..+..+-.+...++..++.++.++..+-..+..+. +++++|+++-..+-.+|..++..+.++++-
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666655555554443 589999999999999999999998887763
No 300
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=33.76 E-value=80 Score=31.43 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=36.4
Q ss_pred hheeeEEec--cCCCccccceeeechhhhccccCccceeeccCCCC-----CCCeEEEEe
Q 041227 67 CLIKLVVTM--GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCN-----SGTSLQLKI 119 (1468)
Q Consensus 67 KIYKfVVSm--GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cn-----sGTVLHVtI 119 (1468)
++..|.|-- ..++..++|.+.+.++.......+...-+||++-. +|.| ||.+
T Consensus 61 ~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i-~l~~ 119 (121)
T cd04054 61 HTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEI-HLEL 119 (121)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEE-EEEE
Confidence 567777632 23567899999999988876545567788887633 6776 6654
No 301
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=33.70 E-value=1e+03 Score=29.45 Aligned_cols=29 Identities=17% Similarity=0.075 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHhHhhhhhcchhhhhhh
Q 041227 1225 DKAVLEAALQEVQGKLKLSESNLGTLRME 1253 (1468)
Q Consensus 1225 dkA~lE~~l~ev~~k~~~~es~l~~l~~E 1253 (1468)
|-..+.+.+..++.++..++.++..|+.+
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~ 119 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTL 119 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666554
No 302
>smart00340 HALZ homeobox associated leucin zipper.
Probab=33.61 E-value=45 Score=29.65 Aligned_cols=32 Identities=47% Similarity=0.608 Sum_probs=27.5
Q ss_pred hhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhh
Q 041227 1066 ECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVN 1104 (1468)
Q Consensus 1066 e~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qkle 1104 (1468)
||||||+- -++|-+|-.-||+..+|||..|..
T Consensus 6 dCe~LKrc-------ce~LteeNrRL~ke~~eLralk~~ 37 (44)
T smart00340 6 DCELLKRC-------CESLTEENRRLQKEVQELRALKLS 37 (44)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcccC
Confidence 89999874 678889999999999999988763
No 303
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=33.47 E-value=39 Score=31.69 Aligned_cols=27 Identities=48% Similarity=0.669 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 041227 586 KEVDVLKQKVLELEKDCNELTEENLAL 612 (1468)
Q Consensus 586 kEie~Lk~kvqeLE~dc~ELtdEnl~l 612 (1468)
.|+++||.+|.+|+...++|..||=-|
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999655
No 304
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=33.13 E-value=5.1e+02 Score=25.92 Aligned_cols=101 Identities=22% Similarity=0.271 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHH--HHHHHHHhhhhHhhhhhhhccccccccChhHHHHHHHHHHhhhh
Q 041227 315 LEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQ--EIEWLKKLAKESEVQSTATENLKFQARDTDKKINELEDEIKFQK 392 (1468)
Q Consensus 315 LQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~--E~EqLKss~k~~~~~q~~~~~lk~e~eD~~~lleELrdEL~yEK 392 (1468)
|+.+.+|+++.....- ..|+..+..|||--.. |++.|-.-.+.-..........+...++|..++.---- .+-+
T Consensus 4 L~~~~~Q~~~~l~~~~--~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~--~~~~ 79 (109)
T PF03980_consen 4 LESVHQQMIEFLEENC--KKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLA--PYKK 79 (109)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhH--HHHH
Confidence 5677788888776654 7888888888875443 44454443332111111112456667777776643221 2334
Q ss_pred hhchhHHHhHhhhhhhhHHHHHHHHHH
Q 041227 393 ESNANLAIQLNKTQESNIELISILQEL 419 (1468)
Q Consensus 393 E~NaNL~LQLqKTQESN~ELVlaVQDL 419 (1468)
..=..|...|++++..|..|.-.|+++
T Consensus 80 ~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 80 KEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678999999999999887777664
No 305
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.08 E-value=6.5e+02 Score=29.85 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=33.3
Q ss_pred hhcCchh-hhhhhhHHHHhhhHHHhH--HHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhh
Q 041227 1071 KVANPKL-QATAEGLIEECSLLQKSN--AELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMK 1129 (1468)
Q Consensus 1071 r~~N~kL-QaT~e~lieec~slQ~~~--~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~ 1129 (1468)
+..+|++ +..+..++..+..+-+.+ ...+...-=+..+...++.+|.+++..+.+|-..
T Consensus 138 ~~~dP~~A~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 138 TAFDAEEAQKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567776 666677766433222111 1122233356677777777777777777776654
No 306
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=33.02 E-value=1.3e+03 Score=30.63 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=29.4
Q ss_pred HhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhH---HHhhhHHHHHHHHHHhhhhhhc
Q 041227 1150 ALNLELDALLHENRKHKDKSVTEESLLNQMYMEKT---VEAQNLQREVAHLTEQISATYD 1206 (1468)
Q Consensus 1150 ~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~---vevenLqrEv~~Lt~QiSat~d 1206 (1468)
.+..++...++....+-..++. ++.+|.++- .+-..|--+|+.|--.|.=-|-
T Consensus 266 ~~~~~~~~~~~~~~~~~~~L~~----~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CR 321 (670)
T KOG0239|consen 266 LLTREVQEALKESNTLQSDLES----LEENLVEKKKEKEERRKLHNEILELKGNIRVFCR 321 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEE
Confidence 4445555555555555443333 344444444 5666777777777776655443
No 307
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=32.98 E-value=9.2e+02 Score=32.64 Aligned_cols=53 Identities=36% Similarity=0.436 Sum_probs=40.1
Q ss_pred hhhhhhhhhhHHHHHHHhhHHHHHhh-hhhhhcc----chhhhccchhhhhhHHHHHH
Q 041227 984 VHLHELEEENLQLSERICGLEAQLRY-LTNERES----SRLELENSATHAMSLQDEIR 1036 (1468)
Q Consensus 984 ~hls~Le~En~qLserisgLEaql~~-lt~E~es----~~l~l~nS~s~~~~Lqdei~ 1036 (1468)
+.+.-|--||.||-+|+.-|.-|||. -..+|.+ +-+++..-.|+-+.||..+.
T Consensus 387 LA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~ 444 (861)
T PF15254_consen 387 LAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQ 444 (861)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHH
Confidence 67899999999999999999999997 2333333 35777777777777766554
No 308
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.78 E-value=1.8e+02 Score=28.16 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhH
Q 041227 1332 AQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTS 1383 (1468)
Q Consensus 1332 ~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~ 1383 (1468)
..+=|-|-.|+..+.+.+-++..|...-..|..+...|+.+...+..+|..+
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666667777777888877777777654
No 309
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=32.77 E-value=71 Score=31.27 Aligned_cols=43 Identities=23% Similarity=0.168 Sum_probs=29.1
Q ss_pred hhhhheeeEEe--ccCCCccccceeeechhhhccccCccceeeccC
Q 041227 64 IEECLIKLVVT--MGSSRSGIVGEALVNLASYMNSKTSVPLTLPLK 107 (1468)
Q Consensus 64 ~~EKIYKfVVS--mGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK 107 (1468)
...+..+|.|- -+.++..++|+|.|.|++...... ..+-+||.
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~-~~~w~~L~ 122 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG-GVVWRDLE 122 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCC-ceEEEeCC
Confidence 34456666662 244568999999999998776543 45666764
No 310
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.59 E-value=9.3e+02 Score=31.91 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=21.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHh
Q 041227 1328 LERTAQFQDEVLSLKKLLNEAKFENERLEASFQI 1361 (1468)
Q Consensus 1328 lqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~ 1361 (1468)
+.+-..+.+++..+...|..++--.+++...+..
T Consensus 174 ~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 174 LKESLKLESDLGDLVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444556666666666666666666666666665
No 311
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=32.01 E-value=2.2e+02 Score=27.65 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=40.6
Q ss_pred HhHHhHHHHhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHH
Q 041227 545 RSRIAEKEENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEE 608 (1468)
Q Consensus 545 ~~kls~kE~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdE 608 (1468)
...|....+|-=+|+=|++-.-...+- .++++..++++++..||+.+..|.++..++..-
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~----~~~~~~~~~~keNieLKve~~~L~~el~~~~~~ 65 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQK----LGPESIEELLKENIELKVEVESLKRELQEKKKL 65 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666565555443331 244566789999999999999999999877643
No 312
>PRK11519 tyrosine kinase; Provisional
Probab=31.69 E-value=5.7e+02 Score=33.53 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHh
Q 041227 1317 LTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERI 1374 (1468)
Q Consensus 1317 ~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~ 1374 (1468)
+-.+++.++-++..+-..+.++..|++..+ --++.|..+-.-.+++...++
T Consensus 351 L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~-------~~~~lY~~lL~r~~e~~i~~a 401 (719)
T PRK11519 351 LEDEKAKLNGRVTAMPKTQQEIVRLTRDVE-------SGQQVYMQLLNKQQELKITEA 401 (719)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHhc
Confidence 334455555555554444444444444333 333445455555555544443
No 313
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=31.20 E-value=59 Score=34.19 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=49.1
Q ss_pred cCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-e-ccCCCccccceeeechhhhccccCcccee
Q 041227 26 TGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-T-MGSSRSGIVGEALVNLASYMNSKTSVPLT 103 (1468)
Q Consensus 26 tGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-S-mGSSRSgiLGEasINLAdYaeAtkP~sVS 103 (1468)
.|..+.||. ..-++-++.|..++.=.+ .++ ....+|-| . ...++-.++|.|.+++.+++++.+..
T Consensus 30 ~g~~~~kT~-vvk~t~nP~WnE~f~f~i---~~~------~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~~--- 96 (145)
T cd04038 30 LGNQKVKTR-VIKKNLNPVWNEELTLSV---PNP------MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLD--- 96 (145)
T ss_pred ECCEEEEee-eEcCCCCCeecccEEEEe---cCC------CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhhh---
Confidence 466666654 444566778876543332 232 33456666 2 23556789999999999999987753
Q ss_pred eccCCCCCCCeEE
Q 041227 104 LPLKKCNSGTSLQ 116 (1468)
Q Consensus 104 LPLK~cnsGTVLH 116 (1468)
+|..-..||++-
T Consensus 97 -~~~~~~~~~~~~ 108 (145)
T cd04038 97 -HLRDTPGGTQIK 108 (145)
T ss_pred -ccccCCCCEEEE
Confidence 255566788555
No 314
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.16 E-value=58 Score=29.70 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=28.5
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhh
Q 041227 980 HEMEVHLHELEEENLQLSERICGLEAQLRYLTNER 1014 (1468)
Q Consensus 980 ~elE~hls~Le~En~qLserisgLEaql~~lt~E~ 1014 (1468)
..||.++..|+.+|..|...+..|..++..|..+.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35778888899999999988888888888877653
No 315
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.95 E-value=4.3e+02 Score=29.60 Aligned_cols=69 Identities=26% Similarity=0.321 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhh
Q 041227 290 AEVKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAK 358 (1468)
Q Consensus 290 AE~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k 358 (1468)
.+..|.+-.++...++....+++..+-.|+.+.+.=-+.......|++.++.++++++++|+..+..-.
T Consensus 115 le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 115 LEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455566777777777777777776554445556679999999999999999998886554
No 316
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.81 E-value=4.3e+02 Score=29.36 Aligned_cols=14 Identities=50% Similarity=0.833 Sum_probs=7.8
Q ss_pred ChhHHHHHHHHHHhh
Q 041227 376 DTDKKINELEDEIKF 390 (1468)
Q Consensus 376 D~~~lleELrdEL~y 390 (1468)
|| ..++.+++++.-
T Consensus 133 Dp-~~i~~~~~~~~~ 146 (188)
T PF03962_consen 133 DP-EKIEKLKEEIKI 146 (188)
T ss_pred CH-HHHHHHHHHHHH
Confidence 55 456666665443
No 317
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=30.80 E-value=87 Score=31.48 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=28.6
Q ss_pred heeeEE-ec-cCCCccccceeeechhhhccccC----ccceeeccCCCC
Q 041227 68 LIKLVV-TM-GSSRSGIVGEALVNLASYMNSKT----SVPLTLPLKKCN 110 (1468)
Q Consensus 68 IYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtk----P~sVSLPLK~cn 110 (1468)
..+|-| .. +.++..++|.+.|++++....-. -..+++||.+-+
T Consensus 62 ~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 62 TLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN 110 (125)
T ss_pred EEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence 455555 33 34467899999999999885422 234688886444
No 318
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.65 E-value=2.2e+02 Score=32.67 Aligned_cols=95 Identities=24% Similarity=0.246 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhcccccc
Q 041227 294 IEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKFQ 373 (1468)
Q Consensus 294 IEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~e 373 (1468)
+-.+=.++..|+.+ .+.+.+.+.++++..+.++ |..|....+++-..|++|++....-++.... +
T Consensus 116 ~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~----------~ 180 (216)
T KOG1962|consen 116 LHTLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQK----------K 180 (216)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH----------H
Confidence 33344455556655 7777788888888888777 8888888888888999888887776654111 1
Q ss_pred ccChhHHHHHHHHHHhhhhhhchhHHHhHh
Q 041227 374 ARDTDKKINELEDEIKFQKESNANLAIQLN 403 (1468)
Q Consensus 374 ~eD~~~lleELrdEL~yEKE~NaNL~LQLq 403 (1468)
.....-..+++.+|-+=..+-|.+|+-|++
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 223445667788887777777888877764
No 319
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.95 E-value=4.1e+02 Score=26.18 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=28.0
Q ss_pred hhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhh
Q 041227 329 QASLEMELSKSHAQCDGLKQEIEWLKKLAKESEV 362 (1468)
Q Consensus 329 gqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~ 362 (1468)
.+.|..|++.+..-|++|.+|-++||.-..-|-+
T Consensus 34 nn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 34 NNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999977654433
No 320
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=29.80 E-value=1.2e+02 Score=32.09 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=51.8
Q ss_pred ccccccCC--cc-cee-EEEEEEcccCcccccccccccccCccccccccchhcccccCc-------chhhhhhhheeeEE
Q 041227 5 IWELQVPK--GW-DKL-VVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDN-------ALKEIEECLIKLVV 73 (1468)
Q Consensus 5 FhATQVP~--Gw-DkL-fVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~-------KTkk~~EKIYKfVV 73 (1468)
+.|-.+|. |. |-- .|.+.| +.+|...+.+|..-++-+-.|...++=.+....++ -.........+|-|
T Consensus 7 i~ArnL~~~~g~sDPYV~V~l~~-~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V 85 (148)
T cd04010 7 IECSDLALKNGTCDPYASVTLIY-SNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDL 85 (148)
T ss_pred EeCcCCCCCCCCCCceEEEEEeC-CcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEE
Confidence 45666663 44 432 233333 22232333333322333455887776555422211 11223334555555
Q ss_pred -e-ccCCCccccceeeechhhhccccCccceeecc
Q 041227 74 -T-MGSSRSGIVGEALVNLASYMNSKTSVPLTLPL 106 (1468)
Q Consensus 74 -S-mGSSRSgiLGEasINLAdYaeAtkP~sVSLPL 106 (1468)
. -+.++..+||++.|++.+......+...-+||
T Consensus 86 ~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L 120 (148)
T cd04010 86 WHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFL 120 (148)
T ss_pred EcCCCCCCCceeEEEEEecccccccCCcCcceeec
Confidence 2 23368899999999999866553455667777
No 321
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=29.73 E-value=6.8e+02 Score=26.42 Aligned_cols=99 Identities=22% Similarity=0.342 Sum_probs=57.8
Q ss_pred HHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhh
Q 041227 1069 YLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKE 1148 (1468)
Q Consensus 1069 ~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKE 1148 (1468)
-+|+-.|.-......|.++|+.|.+-.+++.+---.+..-...+-..... +|+.
T Consensus 10 kiRVldp~~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~----------------eKlk---------- 63 (120)
T PF14931_consen 10 KIRVLDPEKADQTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVEN----------------EKLK---------- 63 (120)
T ss_pred CeeecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHH----------
Confidence 35778888888888899999999888877765544443333322222221 2222
Q ss_pred hHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHH
Q 041227 1149 KALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTE 1199 (1468)
Q Consensus 1149 k~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~ 1199 (1468)
.-=+.+++..-.++.+ +....|.-+-.||.+|.++|..|-.+|..
T Consensus 64 ---AIG~RN~l~s~~k~R~---~~~q~lq~~I~Ek~~eLERl~~E~~sL~k 108 (120)
T PF14931_consen 64 ---AIGARNLLKSEAKQRE---AQQQQLQALIAEKKMELERLRSEYESLQK 108 (120)
T ss_pred ---HHHhHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223444444433333 22233556667888888888888777654
No 322
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.72 E-value=5.2e+02 Score=33.88 Aligned_cols=101 Identities=24% Similarity=0.310 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHh----------hhhhHHHHHhhhHHhhhHHHHHH
Q 041227 288 EAAEVKIEELHAEARMWEQNARKLMTDLEKVQQQSL-------DQLA----------RQASLEMELSKSHAQCDGLKQEI 350 (1468)
Q Consensus 288 eaAE~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQla-------kEsK----------rgqdLs~EvS~Lk~ERD~LK~E~ 350 (1468)
..-+.++++|..|+..|++--..+..+++.|+.++. .+.. +-..|.+++..-+...+.|+.++
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566665555555555544444444444332 2211 22345555555566666666666
Q ss_pred HHHHHhhhhHhhhhhhhccccccccChhHHHHHHHHHHhh
Q 041227 351 EWLKKLAKESEVQSTATENLKFQARDTDKKINELEDEIKF 390 (1468)
Q Consensus 351 EqLKss~k~~~~~q~~~~~lk~e~eD~~~lleELrdEL~y 390 (1468)
.+|+...+ +..++-+--++--.-..+.-|++++.+.++
T Consensus 505 ~~l~k~~~--lE~sG~g~pvk~ve~~t~~~Ie~~e~~~gi 542 (652)
T COG2433 505 AELRKMRK--LELSGKGTPVKVVEKLTLEAIEEAEEEYGI 542 (652)
T ss_pred HHHHHHHh--hhhcCCCcceehhhhhhHHHHHhHHHhhcc
Confidence 66664443 232322211221222344556666666655
No 323
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=29.57 E-value=88 Score=34.15 Aligned_cols=153 Identities=21% Similarity=0.264 Sum_probs=45.2
Q ss_pred HHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHH----HHHHHHHhhh
Q 041227 1196 HLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQL----KSELAAARQN 1271 (1468)
Q Consensus 1196 ~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l----~~~L~askqn 1271 (1468)
.+..+|..--.+|.+..- +|..||.+.+-|-..+-.-+.++.-++.+.-.|- |...-++-| -.++..++..
T Consensus 12 ~l~~~L~~l~~erqkl~~----qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lp-ee~~~Lqfl~~~~r~d~~~~~~~ 86 (181)
T PF09311_consen 12 ALQQHLQSLEAERQKLRA----QVRRLCQENDWLRGELANTQQKLQESEQEVAQLP-EEVKHLQFLVSIKREDLIESRTA 86 (181)
T ss_dssp HHHHHHHHHHHCCHHHHT--------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCc-chHHHHHHHHHhccccccccchh
Confidence 344555555556655543 5677777777777777777777744444444333 222222222 2233333332
Q ss_pred HHHHHhhHHHHHHHHhhhCcchHh-------hhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q 041227 1272 QEVLMADHEKLLNLLEDVKPNEEK-------FRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKL 1344 (1468)
Q Consensus 1272 ~emL~~d~ek~~~lle~~kSneek-------lk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~s 1344 (1468)
.+..-..-.-....|.+.+.+.+. ...+.......+-..-||.-.-+.-+.+|.+|+.+...-+-.|..-|..
T Consensus 87 ~e~~e~~~~~ei~~L~~l~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~E~~~rl~tL~nlv~q~~~q~r~evav~~~Kqa 166 (181)
T PF09311_consen 87 AEHEEEKLRSEIDTLQELFPNLEEELRAEISELPSPKSEMAQLQSQGYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQA 166 (181)
T ss_dssp ---------------------------------------------S-TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhhhhhcccccchhHHHcCccccccccccccccccccchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 111111111111122223333222 2233345556777888999999999999999999998888888999998
Q ss_pred HHHHhhhhH
Q 041227 1345 LNEAKFENE 1353 (1468)
Q Consensus 1345 L~~~kfek~ 1353 (1468)
|...-++.|
T Consensus 167 lEdl~~~~~ 175 (181)
T PF09311_consen 167 LEDLEKESG 175 (181)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHHHhh
Confidence 887776655
No 324
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.26 E-value=68 Score=31.23 Aligned_cols=50 Identities=32% Similarity=0.331 Sum_probs=43.6
Q ss_pred hhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhcc
Q 041227 967 NLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERES 1016 (1468)
Q Consensus 967 ~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es 1016 (1468)
-+|+++.+||.--+--|.-|-+|.+-..+.---|..+-+|||+||+.-..
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888999999999999999999888888888899999999999986443
No 325
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.16 E-value=8.2e+02 Score=32.16 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCc--hhhhhhhhHHHHhhhHHHhHHHHH
Q 041227 1033 DEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANP--KLQATAEGLIEECSLLQKSNAELR 1099 (1468)
Q Consensus 1033 dei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~--kLQaT~e~lieec~slQ~~~~eLr 1099 (1468)
+.+++-......-..-+.+.+.+.+.++..++..-+..|..|- -+...+..+++....|+++..+++
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334445555556666666666666666666553 223334455555444444444443
No 326
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=29.13 E-value=2.1e+02 Score=28.02 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=49.1
Q ss_pred EEEEEccc-CcccccccccccccC-ccccccccchhcccccCcchhhhhhhheeeEE-eccCCCccccceeeechhhhcc
Q 041227 19 VSVVLVET-GKTIAKSSKAPVRNG-NCRWIETFSESIWIPQDNALKEIEECLIKLVV-TMGSSRSGIVGEALVNLASYMN 95 (1468)
Q Consensus 19 VSiVp~Dt-GKtTAKteKA~VRnG-~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-SmGSSRSgiLGEasINLAdYae 95 (1468)
|++.+... +....||. +.-.+| +..|...+.=.+. ++.. ....|-| .....+..++|.+.+.+.+..
T Consensus 31 v~l~~~~~~~~~~~kT~-~~~~~~~~P~w~e~f~f~~~---~~~~-----~~l~~~V~d~~~~~~~~iG~~~~~l~~l~- 100 (128)
T cd00275 31 VEIHGLPADDSAKFKTK-VVKNNGFNPVWNETFEFDVT---VPEL-----AFLRFVVYDEDSGDDDFLGQACLPLDSLR- 100 (128)
T ss_pred EEEEeCCCCCCCcEeee-eecCCCcCCccCCcEEEEEe---CCCe-----EEEEEEEEeCCCCCCcEeEEEEEEhHHhc-
Confidence 55554433 33333333 233556 7888543221111 2221 1345656 222228899999999999874
Q ss_pred ccCccceeeccCCC----CCCCeEEEEeee
Q 041227 96 SKTSVPLTLPLKKC----NSGTSLQLKIQC 121 (1468)
Q Consensus 96 AtkP~sVSLPLK~c----nsGTVLHVtIQ~ 121 (1468)
+....+||+.- -.|.-|+|+|+.
T Consensus 101 ---~g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 101 ---QGYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred ---CceEEEEecCCCCCCCcceeEEEEEEE
Confidence 34566788542 246677777753
No 327
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=28.27 E-value=69 Score=35.44 Aligned_cols=46 Identities=26% Similarity=0.444 Sum_probs=39.9
Q ss_pred HHHHhHhHhhhHHHHHHHHHHHHhhhhcccccchHHHHHHhhhhhh
Q 041227 646 VVQLKSQICKLEEELQERNALIERLSTYENRSDDLENQLQAFKDKV 691 (1468)
Q Consensus 646 ~~~l~~q~~~leee~~~~~~~~~~~~~~~~k~~dlel~~~~fk~~~ 691 (1468)
..+|+..|.+|+.+....+.++...+.+.||-..|+.+|..|...-
T Consensus 122 ~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 122 KNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888999999999999999999999999999999999998753
No 328
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.08 E-value=1.9e+03 Score=30.88 Aligned_cols=293 Identities=22% Similarity=0.286 Sum_probs=149.6
Q ss_pred HHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhh-hhhh
Q 041227 910 NELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEV-HLHE 988 (1468)
Q Consensus 910 ~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~-hls~ 988 (1468)
.+.+.++-..|++...+|+.+.-.--. +-=.+++++++- -++.+|--++..++. --+.
T Consensus 680 ~~~~~~~~~~q~el~~le~eL~~le~~----~~kf~~l~~ql~-----------------l~~~~l~l~~~r~~~~e~~~ 738 (1174)
T KOG0933|consen 680 KQAQKELRAIQKELEALERELKSLEAQ----SQKFRDLKQQLE-----------------LKLHELALLEKRLEQNEFHK 738 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-----------------HHHHHHHHHHHHHhcChHhh
Confidence 345556666677777776665332221 112245555443 222222222222221 1123
Q ss_pred hhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHhHh
Q 041227 989 LEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQD-------MQKRWL 1061 (1468)
Q Consensus 989 Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe-------~q~~ws 1061 (1468)
+=.++.++.+.|..+++|+- +..-.++.-+++|.-+++-|---+-+-+.++.+ .-.+.-
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ik--------------e~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e 804 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIK--------------EKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAE 804 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 44566677777777777664 333445555666655555443332222222222 222221
Q ss_pred hhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHH
Q 041227 1062 GVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSML 1141 (1468)
Q Consensus 1062 e~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~l 1141 (1468)
+.--+|+-=...=..||.+.|-+-.|.++++.+...++.+--.|......|+++++-.+.- |..+. .-+
T Consensus 805 ~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~-------~~~~~----~el 873 (1174)
T KOG0933|consen 805 ESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD-------VKKAQ----AEL 873 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH-------HHHHH----HHH
Confidence 1112222111222267888888888888888888877777666666666666665543322 22222 233
Q ss_pred HHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhh
Q 041227 1142 EEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSH 1221 (1468)
Q Consensus 1142 e~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~ 1221 (1468)
+++.-|=..++.++..++.+-.+--.+. +.-..+++.|.-||..+ ++-+.++.-+|..
T Consensus 874 ~~~k~k~~~~dt~i~~~~~~~e~~~~e~-----------~~~~l~~kkle~e~~~~-----------~~e~~~~~k~v~~ 931 (1174)
T KOG0933|consen 874 KDQKAKQRDIDTEISGLLTSQEKCLSEK-----------SDGELERKKLEHEVTKL-----------ESEKANARKEVEK 931 (1174)
T ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHh-----------hcccchHHHHHhHHHHh-----------hhhHHHHHHHHHH
Confidence 4555555567777777666543322211 11224555566666553 2345667777888
Q ss_pred hhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhh
Q 041227 1222 LRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQN 1271 (1468)
Q Consensus 1222 LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn 1271 (1468)
|+++-+=+.+.-+-..-+=..|-=.=++.+ +-..+++.|.+--.+.+.+
T Consensus 932 l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~-~are~l~~Lq~k~~~l~k~ 980 (1174)
T KOG0933|consen 932 LLKKHEWIGDEKRLFGKKGTDYDFESYDPH-EAREELKKLQEKKEKLEKT 980 (1174)
T ss_pred HHHhccchhHHHHhhcCCCCccccccCCHh-HHHHHHHHhhHHHHHHHhh
Confidence 877777666444443333334433344444 5566677776665555544
No 329
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=27.90 E-value=4.5e+02 Score=27.46 Aligned_cols=96 Identities=25% Similarity=0.265 Sum_probs=53.7
Q ss_pred chHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHH
Q 041227 1292 NEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKA 1371 (1468)
Q Consensus 1292 neeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLka 1371 (1468)
+++++.+-+.+|.- ++.-.-.+..++.++..|--+. -.++.++-.+|..+.+.--+...|+..+.-+-..+..+ .
T Consensus 15 d~~~l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~n---L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~ 89 (150)
T PF07200_consen 15 DEEKLDAFVKSLPQ-VQELQQEREELLAENEELAEQN---LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-S 89 (150)
T ss_dssp H-HHHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 44555555555543 3433334444444444443322 12336677777777766666667777776666666666 5
Q ss_pred HHhhHHHhhhhHHHHHhhhhh
Q 041227 1372 ERISFMQKISTSQQVVSELDD 1392 (1468)
Q Consensus 1372 ek~~~~~kis~~q~~~seled 1392 (1468)
.+-+-..=...|+.++++.++
T Consensus 90 ~~~s~~~l~~~L~~~~~e~ee 110 (150)
T PF07200_consen 90 SNYSPDALLARLQAAASEAEE 110 (150)
T ss_dssp HCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 555555566668888887776
No 330
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.75 E-value=1.4e+03 Score=29.22 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=30.2
Q ss_pred HHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHH
Q 041227 1315 LQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASF 1359 (1468)
Q Consensus 1315 qq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl 1359 (1468)
..++.....++.+|..+....+++-.|+..++.++.+..++-.-|
T Consensus 325 e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777777777777777777777766665554433
No 331
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=27.55 E-value=7.8e+02 Score=27.49 Aligned_cols=136 Identities=24% Similarity=0.307 Sum_probs=78.2
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHhhh-hhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhh-
Q 041227 985 HLHELEEENLQLSERICGLEAQLRYL-TNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLG- 1062 (1468)
Q Consensus 985 hls~Le~En~qLserisgLEaql~~l-t~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse- 1062 (1468)
-|+.|.....|.-.++..||.|+..= ..+-.+.. -.....+..+|.+-+ .+|.+-|.|-.+
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~--~~~~~e~s~dLe~~l---------------~rLeEEqqR~~~L 79 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQR--RRSEEEHSPDLEEAL---------------IRLEEEQQRSEEL 79 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccccc--ccccccCcccHHHHH---------------HHHHHHHHhHHHH
Confidence 47889999999999999999999210 00001110 111222334444433 355555555555
Q ss_pred ------hhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 041227 1063 ------VQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEK 1136 (1468)
Q Consensus 1063 ------~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~k 1136 (1468)
.-+..|..+.+|-.|+.-+..|-.+ +..+.++|...--.++.....+-.-+..-+.+++++-+.|..|=.-
T Consensus 80 ~qvN~lLReQLEq~~~~N~~L~~dl~klt~~---~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~ 156 (182)
T PF15035_consen 80 AQVNALLREQLEQARKANEALQEDLQKLTQD---WERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQ 156 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHH
Confidence 2333333444555444443333332 3334455665556666667777777778888888888888888777
Q ss_pred HHhH
Q 041227 1137 YLSM 1140 (1468)
Q Consensus 1137 l~s~ 1140 (1468)
|.-|
T Consensus 157 f~el 160 (182)
T PF15035_consen 157 FAEL 160 (182)
T ss_pred HHHH
Confidence 7643
No 332
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=27.26 E-value=74 Score=31.24 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=15.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 041227 1429 AQIRRENSQFQRRIKCLEKEKEDCLSR 1455 (1468)
Q Consensus 1429 ~ri~r~n~e~q~ki~~le~E~ee~~~r 1455 (1468)
..|..+|.++++.|+-|+.|.++..+-
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666665555443
No 333
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=26.86 E-value=6.2e+02 Score=29.74 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhHHHHHhhHHHHHHHHh
Q 041227 1258 IQQLKSELAAARQNQEVLMADHEKLLNLLE 1287 (1468)
Q Consensus 1258 i~~l~~~L~askqn~emL~~d~ek~~~lle 1287 (1468)
+......+.+++.+-+....+.+.+..|..
T Consensus 116 ~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~ 145 (346)
T PRK10476 116 AASANEQVERARANAKLATRTLERLEPLLA 145 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666666664
No 334
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=26.85 E-value=1.1e+02 Score=29.91 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=43.6
Q ss_pred ccccccCC-----cc-ceeEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhh-hhhheeeEE-ec-
Q 041227 5 IWELQVPK-----GW-DKLVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEI-EECLIKLVV-TM- 75 (1468)
Q Consensus 5 FhATQVP~-----Gw-DkLfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~-~EKIYKfVV-Sm- 75 (1468)
++|.++|. |. |- ||-|.-...|+.++||. ..=++-+..|..+++=.+. + ... .....+|.| --
T Consensus 8 ~~a~~L~~~d~~~~~~Dp-yv~v~~~~~~~~~~kT~-v~~~t~nP~Wne~f~f~~~----~--~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 8 HRATDLPKADFGTGSSDP-YVTASFAKFGKPLYSTR-IIRKDLNPVWEETWFVLVT----P--DEVKAGERLSCRLWDSD 79 (111)
T ss_pred EEeeCCCcccCCCCCCCc-cEEEEEccCCCccEeee-eECCCCCCccceeEEEEeC----c--hhccCCCEEEEEEEeCC
Confidence 45677773 22 22 33332223466666543 2223334556655431111 1 111 234566666 21
Q ss_pred cCCCccccceeeechhhhccc
Q 041227 76 GSSRSGIVGEALVNLASYMNS 96 (1468)
Q Consensus 76 GSSRSgiLGEasINLAdYaeA 96 (1468)
..++..+||++.|.+++.+..
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCCcceEEEEEHHHHhcC
Confidence 234679999999999999843
No 335
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=26.75 E-value=1.7e+02 Score=32.71 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHH
Q 041227 300 EARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLK 354 (1468)
Q Consensus 300 E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLK 354 (1468)
|+++.-.-+..|+.++.+|+++|-+..++ ++..++.+|+.|-|.++.|||-.+
T Consensus 106 eL~s~~~ei~~L~~kI~~L~~~in~~~k~--~~n~~i~slk~EL~d~iKe~e~~e 158 (181)
T PF04645_consen 106 ELKSIKKEIEILRLKISSLQKEINKNKKK--DLNEEIESLKSELNDLIKEREIRE 158 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44455556677777888888888876665 446677788888888888887544
No 336
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=26.60 E-value=1e+03 Score=27.46 Aligned_cols=180 Identities=20% Similarity=0.236 Sum_probs=77.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHH
Q 041227 1036 RRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQ 1115 (1468)
Q Consensus 1036 ~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~k 1115 (1468)
.|-..+++-+...++.....+|..|.+.++-..-|-.-...++.-+..|-..-.-++..+..|+.++......=..|+++
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555444444333333444444555555555666666666666666666667777
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhh---HHHHHHH-----------------------HHhhhhcchh
Q 041227 1116 LGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALN---LELDALL-----------------------HENRKHKDKS 1169 (1468)
Q Consensus 1116 L~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~---~ELe~l~-----------------------qE~~~~~ek~ 1169 (1468)
+++.......+-..+..-+..-..+..+...-...+. .+|-.++ ..+..+---|
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~s~dl 163 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAPPPPPHHPVAEPDEGDEDENDEENSEYSADL 163 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTS--GGGS------------------EEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCccccccccccccccc
Confidence 7766666665555544444444444333322211111 1111110 0101110011
Q ss_pred hhHHHHHHHh-------hhhhHHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHH
Q 041227 1170 VTEESLLNQM-------YMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEV 1219 (1468)
Q Consensus 1170 ~~~~~llnq~-------~~Ek~vevenLqrEv~~Lt~QiSat~dere~~~s~av~Ev 1219 (1468)
. ....+++. |+||. ++||.=+..|+..|++..|+-..++.|.|+..
T Consensus 164 ~-~~~~~~~~sEeeR~t~~EKn---k~lq~QL~~L~~EL~~~kde~k~T~~D~~h~e 216 (246)
T PF00769_consen 164 E-TDGDMKDRSEEERVTYAEKN---KRLQEQLKELKSELEQLKDEEKQTQLDIIHAE 216 (246)
T ss_dssp ---T-T--TCGGGC---HHHH----HHHHHHHHHHHHHHHTTB-CCG--HHHHHHHH
T ss_pred c-ccccccchhHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhhccchhHHHHHH
Confidence 1 01112222 33333 36777788888888888888888888888754
No 337
>PRK11519 tyrosine kinase; Provisional
Probab=26.17 E-value=1e+03 Score=31.34 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCc--hhhhhhhhHHHH
Q 041227 1032 QDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANP--KLQATAEGLIEE 1087 (1468)
Q Consensus 1032 qdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~--kLQaT~e~liee 1087 (1468)
++-+++-.........-+.+.+.+.+.++.+++..-...|..|- -+.+.+..+++.
T Consensus 255 ~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~ 312 (719)
T PRK11519 255 EQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDS 312 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 33333333333344444455555555555555555555555544 234444444443
No 338
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.00 E-value=1.5e+03 Score=29.09 Aligned_cols=188 Identities=24% Similarity=0.275 Sum_probs=0.0
Q ss_pred HhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccccccChhHHHHHHHHHHhhhhhhchhHHHhHhhhhhhhHHHHHH
Q 041227 336 LSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKFQARDTDKKINELEDEIKFQKESNANLAIQLNKTQESNIELISI 415 (1468)
Q Consensus 336 vS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~e~eD~~~lleELrdEL~yEKE~NaNL~LQLqKTQESN~ELVla 415 (1468)
.++=+.|-..|....+.+-....+ ..-..+.+++|+..=..-++.|+-|. +++..-..||.+
T Consensus 226 asse~ee~eel~eq~eeneel~ae--------------~kqh~v~~~ales~~sq~~e~~selE----~llklkerl~e~ 287 (521)
T KOG1937|consen 226 ASSEEEEVEELTEQNEENEELQAE--------------YKQHLVEYKALESKRSQFEEQNSELE----KLLKLKERLIEA 287 (521)
T ss_pred ccccchhHHHHHhhhhhHHHHHHH--------------HHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHhHHHHHHh
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhhhhhhhchhhhhHHHHHHHHhhcccCCCCCCCCccccccccchhhhhhcccchhHH
Q 041227 416 LQELEETLAKQKMEIEDLSKMKSEFEEVVGDSKQINTAKQILVKKRRDTSCDSDQEGSIVEHPIRDLNAKIEQQDDRNLE 495 (1468)
Q Consensus 416 VQDLEEmLEqk~~EIs~LS~~~~e~dd~~~d~~q~~~~~~~lVK~~~da~c~~~~e~s~lE~kI~dL~~eIEl~D~~~LE 495 (1468)
+.|=++-|++-+.-+..+ ..+.-+.-..|......+..
T Consensus 288 l~dgeayLaKL~~~l~~~---~~~~~~ltqqwed~R~pll~--------------------------------------- 325 (521)
T KOG1937|consen 288 LDDGEAYLAKLMGKLAEL---NKQMEELTQQWEDTRQPLLQ--------------------------------------- 325 (521)
T ss_pred cCChHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHH---------------------------------------
Q ss_pred HHHHHHHHHHhhhH------HHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHH--------HHHhHHhHHHHhHHHHHHH
Q 041227 496 LELQKLQEAKKNLE------STVQFLEKSLVEKSHEIEMERHLKTQTLMHYEA--------EWRSRIAEKEENIVNLEAK 561 (1468)
Q Consensus 496 mqmEQL~e~~knl~------~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~--------e~~~kls~kE~eI~~L~~K 561 (1468)
...+|.+..++++ .+||.||..|.-.+.+|+...-+..+++-..+. .|-.++.+.-.+|--.++-
T Consensus 326 -kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~D 404 (521)
T KOG1937|consen 326 -KKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQD 404 (521)
T ss_pred -HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHH
Q 041227 562 LSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVL 596 (1468)
Q Consensus 562 L~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvq 596 (1468)
+..++ +.-+.|-|++..+-.+++
T Consensus 405 I~Kil------------~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 405 IVKIL------------EETRELQKQENSESEALN 427 (521)
T ss_pred HHHHH------------HHHHHHHHHHHHHHHHHh
No 339
>PRK10698 phage shock protein PspA; Provisional
Probab=25.53 E-value=1e+03 Score=27.07 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=15.9
Q ss_pred hhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhh
Q 041227 1088 CSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEK 1121 (1468)
Q Consensus 1088 c~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~ 1121 (1468)
...|+......+.+-..|...+..|+.++.+.+.
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555444443
No 340
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.24 E-value=1.3e+02 Score=37.47 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHh
Q 041227 1278 DHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTA 1332 (1468)
Q Consensus 1278 d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~ 1332 (1468)
+...+..++.-|...-..+...+.+|+.+++ .+.+++..|+.+|.++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIR-------ELEKQLSELQNELNALL 172 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhc
Confidence 4556666666666666666666666665555 45555555555544443
No 341
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=25.22 E-value=2.3e+02 Score=34.90 Aligned_cols=90 Identities=27% Similarity=0.361 Sum_probs=52.3
Q ss_pred hhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH----HhHhhhhhh
Q 041227 991 EENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQ----KRWLGVQEE 1066 (1468)
Q Consensus 991 ~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q----~~wse~Qee 1066 (1468)
+.+.+....+.-|..||+.+..+-.+..-+++..-..+..--...+...++...|...+.+++.++- ..|.=+ |
T Consensus 60 qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLa--E 137 (390)
T PRK10920 60 QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLA--Q 137 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH--H
Confidence 4445555566667777777766666555554443333222222223344556666666666666643 456554 6
Q ss_pred hhHH-hhcCchhhhhhh
Q 041227 1067 CEYL-KVANPKLQATAE 1082 (1468)
Q Consensus 1067 ~e~L-r~~N~kLQaT~e 1082 (1468)
.+|| |-||.||+.+-+
T Consensus 138 aeyLlrlA~qkL~l~~D 154 (390)
T PRK10920 138 ADFLVKLAGRKLWSDQD 154 (390)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 7888 888888876543
No 342
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.09 E-value=3.3e+02 Score=26.31 Aligned_cols=85 Identities=31% Similarity=0.388 Sum_probs=38.6
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhh
Q 041227 902 VEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHE 981 (1468)
Q Consensus 902 ~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~e 981 (1468)
+..++.-...+..++..|..++..+ +....+|..+..+.....+..+++-.. .+
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~------------------~~~~~eL~~l~~~~~~y~~vG~~fv~~------~~-- 60 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLREL------------------ELTLEELEKLDDDRKVYKSVGKMFVKQ------DK-- 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHTSSTT-EEEEEETTEEEEE------EH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhCCCcchhHHHHhHHHHHh------hH--
Confidence 3444444455555555555554433 222334444444444555555555442 11
Q ss_pred hhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhh
Q 041227 982 MEVHLHELEEENLQLSERICGLEAQLRYLTNE 1013 (1468)
Q Consensus 982 lE~hls~Le~En~qLserisgLEaql~~lt~E 1013 (1468)
+--+..|+.....+...|..|+.++.++..+
T Consensus 61 -~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~ 91 (106)
T PF01920_consen 61 -EEAIEELEERIEKLEKEIKKLEKQLKYLEKK 91 (106)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233444444444555555555555554443
No 343
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.94 E-value=92 Score=29.33 Aligned_cols=48 Identities=29% Similarity=0.271 Sum_probs=36.1
Q ss_pred hhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhc
Q 041227 968 LESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERE 1015 (1468)
Q Consensus 968 le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~e 1015 (1468)
++.++.+||+-=+-+|-.|.+|.+...+....|..|+.+++.|.+--.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788777778888888888888888888888888887765433
No 344
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.85 E-value=78 Score=34.11 Aligned_cols=129 Identities=22% Similarity=0.307 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHH--HHHHHHHhhccchhhhhhhhhhhHHHHhc
Q 041227 879 KELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLE--ESIEIMLREGTVASKCLNDLQSEIMVLHR 956 (1468)
Q Consensus 879 ~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLe--e~~e~~~~e~~i~skcld~~~~dl~~l~s 956 (1468)
.++.+...++..+.+.+..-.+++..|+.++.|+.+-+..|.+=+..=+ |.+ +-+.-|....-|..+. ++++|
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~L-VpvGag~fv~~kv~~~-~kviV--- 80 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVL-VPVGAGLFVKAKVKDM-DKVIV--- 80 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE-EEcCCCceEEEEeccC-ceEEE---
Confidence 3455666777778888888888888888888888888777744333110 000 1111222333344443 22221
Q ss_pred ccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhh
Q 041227 957 DMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTN 1012 (1468)
Q Consensus 957 s~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~ 1012 (1468)
++=+-|++=+..+.-+.-|..-+.+|+..+-.|++...+|+.+|--++++++.++-
T Consensus 81 ~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 81 SIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred EcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333333333344456666777777777788888888888888877776653
No 345
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.83 E-value=3.6e+02 Score=26.17 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=33.3
Q ss_pred hhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhh
Q 041227 1076 KLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESE 1120 (1468)
Q Consensus 1076 kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~ 1120 (1468)
+|.+-+..+|+-+..||.-+.+|+.++-.|.+.-..|.++...-+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 567777788888888888888888887777766666666555444
No 346
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=24.76 E-value=1.1e+03 Score=26.91 Aligned_cols=109 Identities=21% Similarity=0.276 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHH
Q 041227 1336 DEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIE 1415 (1468)
Q Consensus 1336 dEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a~e 1415 (1468)
.||-.|+.++..+..+....-.-++. ....+|+-|...++.+.- ..+..-.+..+.. |.--| +++|..
T Consensus 85 ~eI~~Le~e~~~~~~e~~~~l~~~~~------qfl~EK~~LEke~~e~~i--~~l~e~a~~el~~--k~~al--e~~A~~ 152 (206)
T PF14988_consen 85 REIQTLEEELEKMRAEHAEKLQEAES------QFLQEKARLEKEASELKI--LQLGERAHKELKK--KAQAL--ELAAKK 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhH--HHhHHHhhHHHHH--HHHHH--HHHHHH
Confidence 45666666665555444332222111 223455555444433221 1233333333222 22222 346666
Q ss_pred hhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1416 ALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEEL 1463 (1468)
Q Consensus 1416 a~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~el 1463 (1468)
+.... -..|.|+|.+++..+.+|-++...+..+...|+..-
T Consensus 153 ~l~e~-------~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk 193 (206)
T PF14988_consen 153 SLDEF-------TRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQK 193 (206)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 234778888888888888888888887777777654
No 347
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.68 E-value=2.2e+02 Score=27.31 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=33.7
Q ss_pred hhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHH
Q 041227 1077 LQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVE 1131 (1468)
Q Consensus 1077 LQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve 1131 (1468)
|-+-++.||.-|.-|+..|.-||.|--.+...-.+|=++...+..+-.-+.-++-
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445566677777777777777776666666666666666666555444444333
No 348
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=24.65 E-value=5.8e+02 Score=24.25 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHHHHHhhHHHHHhhhhhhhccc-----hhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhH
Q 041227 995 QLSERICGLEAQLRYLTNERESS-----RLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEY 1069 (1468)
Q Consensus 995 qLserisgLEaql~~lt~E~es~-----~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~ 1069 (1468)
+...+|..|++++..+....... -..+.+....+..|...|..++..++. +++.....+..|.++.-+...
T Consensus 16 ~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 16 EAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELER----LEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333 367777777777777777766655444 444555566667666555444
Q ss_pred H
Q 041227 1070 L 1070 (1468)
Q Consensus 1070 L 1070 (1468)
+
T Consensus 92 ~ 92 (123)
T PF02050_consen 92 L 92 (123)
T ss_dssp H
T ss_pred H
Confidence 3
No 349
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=24.50 E-value=44 Score=29.58 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 041227 583 DLVKEVDVLKQKVLELEKDCNELTEENLAL 612 (1468)
Q Consensus 583 ~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l 612 (1468)
+|.|-+-+|..+|++||+.+..|=-||+.|
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~l 40 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNL 40 (46)
T ss_dssp -------------------HHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 567788899999999999999999999987
No 350
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=24.17 E-value=74 Score=31.25 Aligned_cols=28 Identities=46% Similarity=0.635 Sum_probs=25.6
Q ss_pred hhhhhhhhHHHHHHHhhHHHHHhhhhhh
Q 041227 986 LHELEEENLQLSERICGLEAQLRYLTNE 1013 (1468)
Q Consensus 986 ls~Le~En~qLserisgLEaql~~lt~E 1013 (1468)
|++|-.||++|-++|-.|||.|..++-+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999988776
No 351
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=24.12 E-value=85 Score=31.54 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=42.6
Q ss_pred ccCccccccccchhcccccCcchhhhhhhheeeEE-ec-cCCCccccceeeechhhhccccCccceeeccCCCCCCCeEE
Q 041227 39 RNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTSLQ 116 (1468)
Q Consensus 39 RnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGTVLH 116 (1468)
++-+..|..+++=.+... . .....|-| .- ..++..++|.+.|++++..-.......-+|-..|. +.+||
T Consensus 43 ~t~nP~Wne~f~f~~~~~---~-----~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 113 (124)
T cd04037 43 NTLNPVFGKMFELEATLP---G-----NSILKISVMDYDLLGSDDLIGETVIDLEDRFFSKHRATCGLPPTYEE-SGPNQ 113 (124)
T ss_pred CCCCCccceEEEEEecCC---C-----CCEEEEEEEECCCCCCCceeEEEEEeecccccchHHHhccCCCcccc-cCcee
Confidence 345667765554333222 1 23455555 22 23467899999999999876666667777777773 33444
Q ss_pred E
Q 041227 117 L 117 (1468)
Q Consensus 117 V 117 (1468)
+
T Consensus 114 ~ 114 (124)
T cd04037 114 W 114 (124)
T ss_pred c
Confidence 3
No 352
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.04 E-value=2.9e+02 Score=27.60 Aligned_cols=11 Identities=0% Similarity=0.214 Sum_probs=4.5
Q ss_pred hhHHHHHHHhH
Q 041227 916 ISDLQKEKSQL 926 (1468)
Q Consensus 916 is~lq~Ek~qL 926 (1468)
+..|...+++|
T Consensus 15 ~~~l~~~~~~l 25 (105)
T cd00632 15 LQAYIVQRQKV 25 (105)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 353
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=23.93 E-value=1.4e+02 Score=31.04 Aligned_cols=79 Identities=14% Similarity=0.208 Sum_probs=48.7
Q ss_pred ccccccCC----ccceeE--EEEEEcccCcccccccccccccCccccccccc-hhcccccCcchhhhhhhheeeEEe--c
Q 041227 5 IWELQVPK----GWDKLV--VSVVLVETGKTIAKSSKAPVRNGNCRWIETFS-ESIWIPQDNALKEIEECLIKLVVT--M 75 (1468)
Q Consensus 5 FhATQVP~----GwDkLf--VSiVp~DtGKtTAKteKA~VRnG~CrWedPIy-ETvkl~qD~KTkk~~EKIYKfVVS--m 75 (1468)
.+|-++|. |..--| |.+.|. |+...| .|+.|..++ .||+| |+..| +.....+++....|.|- -
T Consensus 22 i~A~nL~~~~~~g~~DpyVkv~l~~~--~~~~~k-~kT~v~k~t---~nP~~nE~f~F--~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 22 VKARNLVWDNGKTTADPFVKVYLLQD--GRKISK-KKTSVKRDD---TNPIFNEAMIF--SVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred EEeeCCCCccCCCCCCeEEEEEEEeC--Cccccc-cCCccccCC---CCCeeceeEEE--ECCHHHhCCcEEEEEEEeCC
Confidence 35666663 332234 445553 444332 356666666 57887 44455 34555688888899883 3
Q ss_pred cCCCccccceeeechh
Q 041227 76 GSSRSGIVGEALVNLA 91 (1468)
Q Consensus 76 GSSRSgiLGEasINLA 91 (1468)
+.++..++|++.|-..
T Consensus 94 ~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 94 EDGKTPNVGHVIIGPA 109 (136)
T ss_pred CCCCCCeeEEEEECCC
Confidence 6789999999998543
No 354
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.89 E-value=3.5e+02 Score=31.19 Aligned_cols=50 Identities=30% Similarity=0.385 Sum_probs=35.2
Q ss_pred hhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhh
Q 041227 968 LESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLEL 1021 (1468)
Q Consensus 968 le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l 1021 (1468)
+..|+.+|+.-|+++=.++..+++|. -+|..+..++..|..||.+.-=+|
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee----~~L~e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEE----KCLEEYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778878877777777777554 577778888888888886544333
No 355
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.87 E-value=1.7e+03 Score=29.72 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=61.1
Q ss_pred CchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhH
Q 041227 282 SSKDLLEAAEVKIEELHAE-ARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKES 360 (1468)
Q Consensus 282 SSkd~LeaAE~tIEeLK~E-~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~ 360 (1468)
+....|+.--.+++-||.+ +.-..+....+..-+..|+.+...+.+.-+++..++..++.--..|..-++..+--++..
T Consensus 533 ~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L 612 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKL 612 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566676666788888888 566666666677777777777778777777888888888777777777777777777665
Q ss_pred hhhh
Q 041227 361 EVQS 364 (1468)
Q Consensus 361 ~~~q 364 (1468)
+.|.
T Consensus 613 ~~R~ 616 (717)
T PF10168_consen 613 MKRV 616 (717)
T ss_pred HHHH
Confidence 5553
No 356
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=23.60 E-value=1.4e+02 Score=37.03 Aligned_cols=41 Identities=37% Similarity=0.469 Sum_probs=25.7
Q ss_pred HHhhhHHHhHHHHHH-HHhhhhhhhHHHHHHhhhhhhhhhhhhhh----HHHHHHHHH
Q 041227 1086 EECSLLQKSNAELRK-QKVNLHEHCAVLEAQLGESEKGFSSLSMK----VEALEEKYL 1138 (1468)
Q Consensus 1086 eec~slQ~~~~eLr~-qklelh~~~t~lE~kL~eS~~~f~~~~k~----Ve~LE~kl~ 1138 (1468)
-||+.|-. |-|.|. .-.||+|||++|+ ++|++ |++.|.|-.
T Consensus 146 seCsvlsE-nLErrrQEaeELEgyCsqLk-----------~nCrkVt~SVedaEiKtn 191 (558)
T PF15358_consen 146 SECSVLSE-NLERRRQEAEELEGYCSQLK-----------ENCRKVTRSVEDAEIKTN 191 (558)
T ss_pred HHhHHHHH-HHHhhhhHHHHHHHHHHHHH-----------HHHHHHhhhHHHHHHHhc
Confidence 35555543 344444 4678999999998 56655 555555543
No 357
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=23.23 E-value=1.6e+03 Score=28.56 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHhHhhhhhcchhhhhhhH
Q 041227 1225 DKAVLEAALQEVQGKLKLSESNLGTLRMES 1254 (1468)
Q Consensus 1225 dkA~lE~~l~ev~~k~~~~es~l~~l~~Es 1254 (1468)
+...|+..+..+..++..+-.+|...|+..
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444455444444444444444433
No 358
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.92 E-value=4.7e+02 Score=29.12 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=9.4
Q ss_pred hhhHHhhhHHHHHHHHHHHhh
Q 041227 337 SKSHAQCDGLKQEIEWLKKLA 357 (1468)
Q Consensus 337 S~Lk~ERD~LK~E~EqLKss~ 357 (1468)
.....|-+.||....+||...
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 359
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=22.15 E-value=88 Score=34.15 Aligned_cols=140 Identities=19% Similarity=0.248 Sum_probs=31.3
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041227 978 SKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQ 1057 (1468)
Q Consensus 978 ~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q 1057 (1468)
.+..+--|+..|+.+...|...+..|-..=..|-+|...+.-.+.-|+..+++|.+++..|+--+...+.|+-.--...-
T Consensus 9 ~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~~~~e 88 (181)
T PF09311_consen 9 VMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESRTAAE 88 (181)
T ss_dssp HHHHHHHHHHHHHHCCHHHHT-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccchhhh
Confidence 34455568888888888888877777777777788888888888888999999999998776544333322211111000
Q ss_pred HhHhhhhhhhhHHhhcCchhhhhhhhHH-------HHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhh
Q 041227 1058 KRWLGVQEECEYLKVANPKLQATAEGLI-------EECSLLQKSNAELRKQKVNLHEHCAVLEAQLG 1117 (1468)
Q Consensus 1058 ~~wse~Qee~e~Lr~~N~kLQaT~e~li-------eec~slQ~~~~eLr~qklelh~~~t~lE~kL~ 1117 (1468)
--=....-+..+|+-..|.+-.+.-.-+ -.-..++....+...+--.||.-.++++...+
T Consensus 89 ~~e~~~~~ei~~L~~l~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~E~~~rl~tL~nlv~q~~~q~r 155 (181)
T PF09311_consen 89 HEEEKLRSEIDTLQELFPNLEEELRAEISELPSPKSEMAQLQSQGYEIPARLRTLHNLVIQYESQGR 155 (181)
T ss_dssp -------------------------------------------S-TTS-HHHHHHHHHHHHHHHTT-
T ss_pred hhhhcccccchhHHHcCccccccccccccccccccchHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 0000112233344443333322222112 33345566666666777778888888877643
No 360
>PLN03008 Phospholipase D delta
Probab=22.02 E-value=1.6e+02 Score=39.48 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=42.5
Q ss_pred heeeEEec--cCCCccccceeeechhhhccccCccceeecc-----CCCCCCCeEEEEeeeecCCCC
Q 041227 68 LIKLVVTM--GSSRSGIVGEALVNLASYMNSKTSVPLTLPL-----KKCNSGTSLQLKIQCLTPRAK 127 (1468)
Q Consensus 68 IYKfVVSm--GSSRSgiLGEasINLAdYaeAtkP~sVSLPL-----K~cnsGTVLHVtIQ~Lt~kt~ 127 (1468)
.-.|.|=- ..+ +.++|+|.|.+.++.. ..+...-+|| +.|..|+-|||.+|..--..+
T Consensus 118 ~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~-Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 118 YLEFQVKDDDVFG-AQIIGTAKIPVRDIAS-GERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQI 182 (868)
T ss_pred eEEEEEEcCCccC-CceeEEEEEEHHHcCC-CCceEEEEEccccCCCCCCCCcEEEEEEEEEEcccc
Confidence 45666611 222 5899999999999666 4568889999 446689999999998755443
No 361
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.97 E-value=1.3e+03 Score=26.77 Aligned_cols=92 Identities=26% Similarity=0.337 Sum_probs=64.0
Q ss_pred HHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhh
Q 041227 887 EIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNR 966 (1468)
Q Consensus 887 ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~ 966 (1468)
.|.+.++.+.--.+.+..+.-.++.+|.++..++.....++++-...+.-|. . --++.
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~----------E------------~LAr~ 89 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN----------E------------DLARE 89 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------H------------HHHHH
Confidence 3445555555566677778888899999999999999999988888777766 2 22455
Q ss_pred hhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHh
Q 041227 967 NLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLR 1008 (1468)
Q Consensus 967 ~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~ 1008 (1468)
.|++ +..+|.++..++.+..++.+....|+.+++
T Consensus 90 al~~--------~~~le~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (225)
T COG1842 90 ALEE--------KQSLEDLAKALEAELQQAEEQVEKLKKQLA 123 (225)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 456667777777666666666665555544
No 362
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.95 E-value=1.6e+02 Score=29.89 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=18.5
Q ss_pred HHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1422 AALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIE 1460 (1468)
Q Consensus 1422 aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE 1460 (1468)
.+++.++..++.+|.+++++...|..+...++.....+|
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 344444555555555555555555555444444333343
No 363
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.74 E-value=1.9e+02 Score=30.42 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHH
Q 041227 1036 RRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAE 1097 (1468)
Q Consensus 1036 ~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~e 1097 (1468)
++....+-++..+++++..+.+.||..+----+.||..|.-|+.-.+.|..-+..|+.....
T Consensus 64 ~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 64 QKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 44466888999999999999999999999999999999998988888887777777665443
No 364
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.59 E-value=8.2e+02 Score=24.45 Aligned_cols=95 Identities=21% Similarity=0.377 Sum_probs=45.1
Q ss_pred HHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHH
Q 041227 1359 FQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALGSQEAALKNELAQIRRENSQF 1438 (1468)
Q Consensus 1359 l~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~ 1438 (1468)
|+-+-.+...|-.++..+...+.....|..|++.+.- ..++.++=|..-.......-.+.|+..+ ..+
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~-----d~~vy~~VG~vfv~~~~~ea~~~Le~~~-------e~l 75 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLAD-----DAEVYKLVGNVLVKQEKEEARTELKERL-------ETI 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----cchHHHHhhhHHhhccHHHHHHHHHHHH-------HHH
Confidence 3334444555555566666666666666666665542 3455566665443332222222222222 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041227 1439 QRRIKCLEKEKEDCLSRAQAIEEELKQ 1465 (1468)
Q Consensus 1439 q~ki~~le~E~ee~~~r~q~lE~elk~ 1465 (1468)
...|..++....++......+..+|..
T Consensus 76 e~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 76 ELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 365
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.55 E-value=4.7e+02 Score=32.76 Aligned_cols=93 Identities=19% Similarity=0.228 Sum_probs=61.7
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhc-------cchhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 041227 980 HEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELE-------NSATHAMSLQDEIRRLEAEMEAQKVETKQK 1052 (1468)
Q Consensus 980 ~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~-------nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk 1052 (1468)
.+|+..|..|+++...+..++..+++++.+|..=+....-... -+-.....+=+-+...-.+..+++.++.++
T Consensus 74 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (525)
T TIGR02231 74 AELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERR 153 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999998664432110000 011122333344444555666777888888
Q ss_pred HHHHHHhHhhhhhhhhHHhh
Q 041227 1053 LQDMQKRWLGVQEECEYLKV 1072 (1468)
Q Consensus 1053 ~qe~q~~wse~Qee~e~Lr~ 1072 (1468)
+.+++++...+|.+-..|-.
T Consensus 154 ~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 154 IRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 88888888888877666644
No 366
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=21.35 E-value=3.8e+02 Score=25.09 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=46.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhh
Q 041227 304 WEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKE 359 (1468)
Q Consensus 304 LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~ 359 (1468)
|++-|..+--+...+=+.+.+-.+|=...-.+-.++-.|+++|+++-.+|+..+++
T Consensus 3 W~~~~~vip~~~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 3 WERLANVIPDEKIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666677777788888888888889999999999999999999998874
No 367
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=21.15 E-value=3.9e+02 Score=30.03 Aligned_cols=103 Identities=27% Similarity=0.390 Sum_probs=67.9
Q ss_pred HHHHHHHhHhhhhhhhhHHhhcCchh---hhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhh---
Q 041227 1052 KLQDMQKRWLGVQEECEYLKVANPKL---QATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSS--- 1125 (1468)
Q Consensus 1052 k~qe~q~~wse~Qee~e~Lr~~N~kL---QaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~--- 1125 (1468)
..--|-++| +.-+++ =-..++. +-|-++|+- --=+.+.++|.-|-++|---..|+=.-=.|..+|.+
T Consensus 35 nV~kmR~Kw-es~~~s---~~~~skvti~Edtf~nll~---~a~k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL 107 (181)
T PF04645_consen 35 NVWKMRQKW-ESSEDS---VESDSKVTISEDTFNNLLL---QAFKSNAEARNAKSELEMERSNLELSFIDSFNQYKNLEL 107 (181)
T ss_pred HHHHHHHHH-HhcCCc---cccccccccchhhHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhH
Confidence 344566778 222333 1233454 455555542 223568889999999988888888777777777654
Q ss_pred --hhhhHHHHHHHHHhHHHHhhhhh--------hHhhHHHHHHHHH
Q 041227 1126 --LSMKVEALEEKYLSMLEEISSKE--------KALNLELDALLHE 1161 (1468)
Q Consensus 1126 --~~k~Ve~LE~kl~s~le~issKE--------k~l~~ELe~l~qE 1161 (1468)
|-+.|+.|+-|+++++++|.++= .+|..||+.+..+
T Consensus 108 ~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe 153 (181)
T PF04645_consen 108 KSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKE 153 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 55679999999999999999832 2444555555544
No 368
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.03 E-value=6.8e+02 Score=27.88 Aligned_cols=118 Identities=20% Similarity=0.297 Sum_probs=62.9
Q ss_pred HHHHHHHhhhhcchhhhHHH---HHHHhhhhhHHHhhhHHHHH-------HHHHHhhhhhhcccccchhHHHHHHhhhhh
Q 041227 1155 LDALLHENRKHKDKSVTEES---LLNQMYMEKTVEAQNLQREV-------AHLTEQISATYDEKDGTHSEAVLEVSHLRA 1224 (1468)
Q Consensus 1155 Le~l~qE~~~~~ek~~~~~~---llnq~~~Ek~vevenLqrEv-------~~Lt~QiSat~dere~~~s~av~EvS~LrA 1224 (1468)
|..|+.++.=+-||+-..-+ |=++...-+-..+..|++++ ..|.+.|..+...|+.. .
T Consensus 36 lq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~------------~ 103 (188)
T PF03962_consen 36 LQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES------------E 103 (188)
T ss_pred HHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------------H
Confidence 56777788888888743211 22333334444444444444 44444444444444333 3
Q ss_pred hhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHH
Q 041227 1225 DKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLN 1284 (1468)
Q Consensus 1225 dkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~emL~~d~ek~~~ 1284 (1468)
+.+.+-..+++++.+.....++|..++.=--.+|..+..++...+.--...+.+-.-|..
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444555555555555555555444444456777776666666666665555444443
No 369
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=20.96 E-value=3.2e+02 Score=28.49 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=10.2
Q ss_pred hhhhhhhhhhhhHHHHHHHhhHH
Q 041227 982 MEVHLHELEEENLQLSERICGLE 1004 (1468)
Q Consensus 982 lE~hls~Le~En~qLserisgLE 1004 (1468)
+...+..|-.+|.+|.++.--++
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~ 54 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLE 54 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 33455555556666555543333
No 370
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.94 E-value=8.2e+02 Score=32.17 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHh
Q 041227 1315 LQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERI 1374 (1468)
Q Consensus 1315 qq~~eE~s~LkvQlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~ 1374 (1468)
.++-.++..++.++..+-..|-++..|++..+-.+ +.|..+-.-.+++....+
T Consensus 349 ~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~-------~lY~~lL~r~~e~~i~~a 401 (726)
T PRK09841 349 QTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGR-------AVYLQLLNRQQELSISKS 401 (726)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 45566677777777777777777777776665443 344444444445544443
No 371
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=20.82 E-value=4e+02 Score=25.83 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHH
Q 041227 292 VKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWL 353 (1468)
Q Consensus 292 ~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqL 353 (1468)
+.++.||.+++-|.+.|-...++|..|--.+=.--.+--++....-..+.+-+.+|.++..+
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~ 63 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAA 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999997766544434444455666666777777777666544
No 372
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=20.72 E-value=1.3e+02 Score=29.72 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=38.4
Q ss_pred cCccccccccchhcccccCcchhhhhhhheeeEE-ec-cCCCccccceeeechhhhccccCccceeeccCCCC
Q 041227 40 NGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCN 110 (1468)
Q Consensus 40 nG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cn 110 (1468)
+-++.|...+.=.+. ++. .. .....+|.| .. ...+..+||.+.|.+++++..-. ..--+||+.+.
T Consensus 44 t~nP~Wne~f~f~v~---~~~-~~-~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~l~p~~ 110 (124)
T cd04049 44 GRNPEWNEKFKFTVE---YPG-WG-GDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGV-EPGTAELVPAK 110 (124)
T ss_pred CCCCcccceEEEEec---Ccc-cC-CCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCC-CcCceEeeccc
Confidence 457778776553322 221 11 233445544 33 33467899999999999987433 46666776654
No 373
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=20.64 E-value=2.4e+02 Score=27.87 Aligned_cols=29 Identities=38% Similarity=0.476 Sum_probs=23.6
Q ss_pred CCCccccceeeechhhhccccCccceeecc
Q 041227 77 SSRSGIVGEALVNLASYMNSKTSVPLTLPL 106 (1468)
Q Consensus 77 SSRSgiLGEasINLAdYaeAtkP~sVSLPL 106 (1468)
.++..++|++.|++++.+... ...+.+||
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~~-~~~~~~~l 112 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSSP-GQKLTLPL 112 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcCC-CcEEEEEc
Confidence 567899999999999998653 46677777
No 374
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.35 E-value=2.2e+03 Score=28.97 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHH
Q 041227 990 EEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEA 1040 (1468)
Q Consensus 990 e~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~ 1040 (1468)
+..-.++-.-|-.++.-+--++.+.--..+.+....+.+.+++.++.|+..
T Consensus 150 ~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ 200 (716)
T KOG4593|consen 150 EDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHK 200 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444455555555666667777888888888887654
No 375
>PRK14127 cell division protein GpsB; Provisional
Probab=20.33 E-value=2.8e+02 Score=28.90 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=44.6
Q ss_pred hhcCc-hhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhh-------------hhhhhhhhhHHHHHHH
Q 041227 1071 KVANP-KLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESE-------------KGFSSLSMKVEALEEK 1136 (1468)
Q Consensus 1071 r~~N~-kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~-------------~~f~~~~k~Ve~LE~k 1136 (1468)
|+-++ ..-+-.+.++++--.|.+.+.+|+.+.-.|......++.++.... -...|+.|++.-||..
T Consensus 21 RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~ 100 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKH 100 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHH
Confidence 44444 233444566777777777777777777777777777777766432 3567888999888875
No 376
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=20.20 E-value=2.8e+02 Score=27.95 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=36.0
Q ss_pred hhhheeeEE-eccCCCccccceeeechhhhccccCc----cceeeccCCCCC---CCeEEEEeee
Q 041227 65 EECLIKLVV-TMGSSRSGIVGEALVNLASYMNSKTS----VPLTLPLKKCNS---GTSLQLKIQC 121 (1468)
Q Consensus 65 ~EKIYKfVV-SmGSSRSgiLGEasINLAdYaeAtkP----~sVSLPLK~cns---GTVLHVtIQ~ 121 (1468)
.....+|.| .-...+..++|.+.|.+++......+ .+-=+||....+ ..-|||+|+-
T Consensus 55 ~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 55 QGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred cCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 455667766 33333789999999999998754322 234467765542 3445677763
No 377
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.19 E-value=2.7e+02 Score=28.03 Aligned_cols=61 Identities=30% Similarity=0.329 Sum_probs=44.3
Q ss_pred HHhHHHHhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHh
Q 041227 547 RIAEKEENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEEN 609 (1468)
Q Consensus 547 kls~kE~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEn 609 (1468)
.|.-.|+.|...+..|..+-.--...+. ++..-..|++|...|+.++...|++...|--||
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eL--s~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRREL--SPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCC--ChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 3445556666666666555543333333 667788999999999999999999999888887
No 378
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.18 E-value=5.1e+02 Score=34.34 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=42.7
Q ss_pred hhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcc
Q 041227 1104 NLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKD 1167 (1468)
Q Consensus 1104 elh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~e 1167 (1468)
.+......|..++.+...+-..+.++++.+=..+..-+-.++.-|+.+..||+.|-...+....
T Consensus 590 ~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~ 653 (717)
T PF10168_consen 590 SLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKA 653 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455566666666677777777666666666677888899999999877665544433
No 379
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=20.12 E-value=1.3e+03 Score=26.16 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=49.6
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHH-hhhhhhhhhhhHHHHHHHhhcC
Q 041227 1331 TAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVV-SELDDCKRKKVALQEKVLRLEG 1409 (1468)
Q Consensus 1331 ~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~-seled~k~sk~sleeKl~rle~ 1409 (1468)
+...++.+..+...|..++.....+...........-+.+.........+..+...- +.+..-++.....+--.+..+.
T Consensus 87 l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~ 166 (240)
T PF12795_consen 87 LSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQI 166 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555554444444444444444444444333333333321111 3333333333222222222222
Q ss_pred chhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 041227 1410 DLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCL 1453 (1468)
Q Consensus 1410 dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~ 1453 (1468)
+.--.+..+. ...-+|.+.||.- +..++..+++....++
T Consensus 167 ~~le~el~s~---~~rq~L~~~qrdl--~~~~~~~l~~~l~~Lq 205 (240)
T PF12795_consen 167 EMLEQELLSN---NNRQELLQLQRDL--LKARIQRLQQQLQALQ 205 (240)
T ss_pred HHHHHHHHCc---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 2222222222 3445677777653 4445555555555554
No 380
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.05 E-value=1.3e+02 Score=28.72 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=33.6
Q ss_pred hhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhh
Q 041227 968 LESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTN 1012 (1468)
Q Consensus 968 le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~ 1012 (1468)
++.++.+||+-=+-+|..|.+|.+...+.-..|..|.+||+.|.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777777777777777777777765
No 381
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=20.03 E-value=1.3e+03 Score=26.34 Aligned_cols=145 Identities=17% Similarity=0.125 Sum_probs=76.0
Q ss_pred hhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhh
Q 041227 986 LHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQE 1065 (1468)
Q Consensus 986 ls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qe 1065 (1468)
...|......+-..|.+|=.++.++.. -...-+-.-+.+...++++|=.+|..- +|..-.+.....|.+|+.
T Consensus 89 a~~L~~~i~~l~~~i~~l~~~~~~l~~------~~~~~~~~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~ 160 (264)
T PF06008_consen 89 AQDLEQFIQNLQDNIQELIEQVESLNE------NGDQLPSEDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAED 160 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc------ccCCCCHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHH
Confidence 344555555556666666667766665 122334566777788888888887654 477777777777777665
Q ss_pred hhhHHhhcCchhhhh----hhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 041227 1066 ECEYLKVANPKLQAT----AEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYL 1138 (1468)
Q Consensus 1066 e~e~Lr~~N~kLQaT----~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~ 1138 (1468)
=-...+..=.+.|.. ++.+-+-.+-+..-..|||..--+-......=+.-....+..|.++-+.+..|...-.
T Consensus 161 LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~ 237 (264)
T PF06008_consen 161 LLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQN 237 (264)
T ss_pred HHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222221122333 3333333344444444455444444444444444444445555555554444444333
Done!