Query 041227
Match_columns 1468
No_of_seqs 56 out of 58
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.4 0.00052 1.8E-08 69.7 30.5 55 982-1036 74-128 (284)
2 1i84_S Smooth muscle myosin he 97.9 1.2E-05 4.1E-10 102.8 9.0 15 1189-1203 1120-1134(1184)
3 1i84_S Smooth muscle myosin he 97.8 1.5E-05 5.2E-10 101.9 7.8 25 902-926 873-897 (1184)
4 2v71_A Nuclear distribution pr 96.7 0.025 8.6E-07 60.1 14.9 170 1005-1203 10-179 (189)
5 3na7_A HP0958; flagellar bioge 94.3 1.5 5.1E-05 47.6 17.7 144 986-1145 13-156 (256)
6 3vkg_A Dynein heavy chain, cyt 93.9 1.6 5.5E-05 61.9 20.8 214 1193-1416 1874-2112(3245)
7 3o0z_A RHO-associated protein 93.8 1.4 4.7E-05 46.4 15.3 136 1053-1192 15-150 (168)
8 3na7_A HP0958; flagellar bioge 93.7 1.4 4.9E-05 47.8 16.2 81 962-1060 86-166 (256)
9 2dfs_A Myosin-5A; myosin-V, in 91.7 4.8 0.00016 52.1 19.4 104 1026-1130 840-951 (1080)
10 2v66_B Nuclear distribution pr 91.6 3.1 0.0001 41.3 13.7 94 1027-1148 4-97 (111)
11 2dfs_A Myosin-5A; myosin-V, in 91.6 1.6 5.4E-05 56.5 15.0 54 1046-1106 923-980 (1080)
12 3vkg_A Dynein heavy chain, cyt 91.4 3.5 0.00012 58.7 18.9 192 966-1197 1906-2103(3245)
13 3oja_B Anopheles plasmodium-re 91.1 0.93 3.2E-05 53.3 11.4 61 1400-1463 521-581 (597)
14 2v71_A Nuclear distribution pr 85.3 20 0.0007 38.4 15.7 105 1020-1138 50-154 (189)
15 3oja_B Anopheles plasmodium-re 83.4 3.7 0.00013 48.3 10.2 63 1076-1138 513-575 (597)
16 3tnu_B Keratin, type II cytosk 82.5 7.5 0.00025 38.6 10.4 109 1330-1454 16-124 (129)
17 3tnu_A Keratin, type I cytoske 82.2 6.1 0.00021 39.4 9.7 109 1330-1454 18-126 (131)
18 3o0z_A RHO-associated protein 78.9 58 0.002 34.4 15.9 145 997-1159 5-149 (168)
19 2fxo_A Myosin heavy chain, car 76.6 28 0.00094 34.7 12.3 109 311-422 18-126 (129)
20 2efr_A General control protein 74.8 85 0.0029 32.7 16.7 89 1081-1169 51-142 (155)
21 3a7p_A Autophagy protein 16; c 73.0 9.9 0.00034 39.6 8.2 104 1345-1456 30-133 (152)
22 2fxo_A Myosin heavy chain, car 72.1 27 0.00091 34.8 10.9 89 999-1098 35-123 (129)
23 1x79_B RAB GTPase binding effe 70.5 18 0.00063 36.0 9.2 53 1020-1072 53-105 (112)
24 1rlw_A Phospholipase A2, CALB 69.2 9.5 0.00032 35.6 6.7 53 67-121 70-123 (126)
25 1ugk_A Synaptotagmin IV, KIAA1 67.5 14 0.00048 35.3 7.6 47 64-110 87-135 (138)
26 4fla_A Regulation of nuclear P 66.9 74 0.0025 32.9 13.1 73 488-568 64-136 (152)
27 2ocy_A RAB guanine nucleotide 66.1 1E+02 0.0035 32.2 14.0 132 1327-1467 11-142 (154)
28 3ol1_A Vimentin; structural ge 64.1 49 0.0017 32.7 10.8 54 1331-1387 64-117 (119)
29 3b7y_A E3 ubiquitin-protein li 63.2 21 0.00072 34.5 8.1 79 34-121 62-151 (153)
30 3hnw_A Uncharacterized protein 62.4 22 0.00074 36.2 8.2 45 1423-1467 93-137 (138)
31 3fbk_A RGS3, RGP3, regulator o 60.0 7 0.00024 38.2 4.1 52 69-120 95-149 (153)
32 2p22_A Suppressor protein STP2 57.9 58 0.002 34.5 10.7 135 996-1134 17-156 (174)
33 3u1c_A Tropomyosin alpha-1 cha 56.0 1.2E+02 0.0039 29.3 11.6 24 1439-1462 78-101 (101)
34 1ci6_A Transcription factor AT 55.9 8.5 0.00029 34.3 3.5 33 980-1012 26-58 (63)
35 3ghg_A Fibrinogen alpha chain; 54.5 1.8E+02 0.0061 35.6 15.1 83 539-653 103-185 (562)
36 3ol1_A Vimentin; structural ge 52.9 97 0.0033 30.6 10.8 74 1084-1157 39-112 (119)
37 1wfj_A Putative elicitor-respo 52.7 6.9 0.00024 37.1 2.6 77 39-124 52-131 (136)
38 2efr_A General control protein 52.4 88 0.003 32.6 10.8 74 988-1061 60-133 (155)
39 2d8k_A Synaptotagmin VII; exoc 51.1 18 0.00061 34.6 5.2 48 65-113 91-140 (141)
40 1wt6_A Myotonin-protein kinase 49.8 36 0.0012 32.4 6.7 55 1405-1466 17-71 (81)
41 3oja_A Leucine-rich immune mol 48.9 1E+02 0.0036 35.5 12.0 43 1421-1463 423-465 (487)
42 2yy0_A C-MYC-binding protein; 48.7 22 0.00076 31.0 4.9 32 1426-1457 19-50 (53)
43 3q8t_A Beclin-1; autophagy, AT 47.9 49 0.0017 31.8 7.6 78 966-1043 7-84 (96)
44 2dmh_A Myoferlin; beta-sandwic 47.5 47 0.0016 31.5 7.5 58 67-124 70-134 (140)
45 3i00_A HIP-I, huntingtin-inter 47.4 21 0.0007 35.8 5.0 100 1255-1364 14-113 (120)
46 2ep6_A MCTP2 protein; beta san 46.4 40 0.0014 31.9 6.8 52 68-122 74-131 (133)
47 1gmi_A Protein kinase C, epsil 46.0 28 0.00095 33.3 5.7 55 67-124 77-134 (136)
48 3cvf_A Homer-3, homer protein 45.9 29 0.00099 32.7 5.5 55 669-723 21-75 (79)
49 2e7s_A RAB guanine nucleotide 45.5 17 0.00058 37.2 4.2 127 1107-1251 1-130 (135)
50 2chd_A Rabphilin-3A, exophilin 45.3 46 0.0016 31.7 7.1 97 5-108 36-140 (142)
51 3swk_A Vimentin; cytoskeleton, 44.0 1.7E+02 0.0059 27.5 10.4 77 293-393 8-84 (86)
52 1go4_E MAD1 (mitotic arrest de 43.9 36 0.0012 33.3 6.0 29 331-359 16-44 (100)
53 3tnu_B Keratin, type II cytosk 43.4 51 0.0018 32.6 7.2 72 985-1060 44-115 (129)
54 3thf_A Protein shroom; coiled- 43.0 3.5E+02 0.012 29.2 15.7 141 1085-1251 18-182 (190)
55 2no2_A HIP-I, huntingtin-inter 42.9 2.3E+02 0.0079 27.7 11.5 94 1367-1464 4-99 (107)
56 1go4_E MAD1 (mitotic arrest de 42.9 34 0.0012 33.5 5.6 28 984-1011 19-46 (100)
57 3m7f_B E3 ubiquitin-protein li 42.8 43 0.0015 33.4 6.7 77 39-124 55-142 (176)
58 2b3r_A Phosphatidylinositol-4- 42.7 33 0.0011 32.9 5.6 100 5-112 27-134 (134)
59 2yy0_A C-MYC-binding protein; 42.3 16 0.00056 31.9 3.0 31 587-617 20-50 (53)
60 3tnu_A Keratin, type I cytoske 42.0 54 0.0019 32.6 7.1 72 985-1060 46-117 (131)
61 2no2_A HIP-I, huntingtin-inter 42.0 2.3E+02 0.008 27.7 11.4 52 1320-1378 45-103 (107)
62 2v66_B Nuclear distribution pr 41.0 2E+02 0.0068 28.7 10.7 63 327-409 3-65 (111)
63 3i00_A HIP-I, huntingtin-inter 40.3 1.8E+02 0.0061 29.2 10.4 65 292-359 15-79 (120)
64 2bwq_A Regulating synaptic mem 40.2 44 0.0015 31.2 5.9 94 5-106 25-128 (129)
65 1x8y_A Lamin A/C; structural p 39.8 48 0.0016 31.1 6.0 43 1017-1060 26-68 (86)
66 1l8d_A DNA double-strand break 38.8 2.3E+02 0.0079 26.8 10.7 33 1360-1392 13-45 (112)
67 3oja_A Leucine-rich immune mol 38.7 1.7E+02 0.0059 33.8 11.7 108 904-1056 364-475 (487)
68 2jee_A YIIU; FTSZ, septum, coi 38.7 81 0.0028 30.0 7.2 56 1328-1383 19-74 (81)
69 3mov_A Lamin-B1; LMNB1, B-type 38.7 47 0.0016 31.9 5.9 42 1018-1060 36-77 (95)
70 3u59_A Tropomyosin beta chain; 37.8 2.8E+02 0.0094 26.5 11.1 22 1440-1461 79-100 (101)
71 1rh8_A Piccolo protein; beta-s 37.7 43 0.0015 31.8 5.5 47 64-111 93-141 (142)
72 3mq7_A Bone marrow stromal ant 37.1 2.3E+02 0.0077 28.7 10.4 82 1104-1203 22-110 (121)
73 3hnw_A Uncharacterized protein 36.7 1.4E+02 0.0049 30.3 9.3 72 1080-1151 62-133 (138)
74 3swy_A Cyclic nucleotide-gated 36.3 18 0.00061 31.1 2.3 26 1281-1306 20-45 (46)
75 1gu4_A CAAT/enhancer binding p 35.8 26 0.0009 32.8 3.5 32 981-1012 40-71 (78)
76 3bas_A Myosin heavy chain, str 35.5 1.1E+02 0.0037 28.9 7.7 36 1336-1371 21-56 (89)
77 2fk9_A Protein kinase C, ETA t 35.4 37 0.0013 34.5 4.9 41 78-121 112-155 (157)
78 1ic2_A Tropomyosin alpha chain 35.3 1.1E+02 0.0039 28.1 7.7 44 1083-1126 38-81 (81)
79 2jee_A YIIU; FTSZ, septum, coi 35.3 1E+02 0.0035 29.3 7.4 68 869-936 10-77 (81)
80 3mq9_A Bone marrow stromal ant 35.2 1.6E+02 0.0056 33.8 10.7 90 1024-1119 371-462 (471)
81 3mov_A Lamin-B1; LMNB1, B-type 35.1 40 0.0014 32.5 4.7 48 969-1016 11-62 (95)
82 1d7m_A Cortexillin I; coiled-c 34.7 2.5E+02 0.0085 27.3 9.9 70 1082-1151 21-90 (101)
83 1hjb_A Ccaat/enhancer binding 34.7 51 0.0017 31.5 5.3 32 1435-1466 38-69 (87)
84 1gk4_A Vimentin; intermediate 34.0 1.3E+02 0.0046 27.9 8.0 57 1000-1060 10-66 (84)
85 3u1c_A Tropomyosin alpha-1 cha 33.8 2.9E+02 0.0099 26.5 10.5 49 1048-1096 6-54 (101)
86 3u59_A Tropomyosin beta chain; 33.7 2.4E+02 0.0082 26.9 9.9 79 1046-1124 4-82 (101)
87 3kwu_A MUNC13-1; calcium bindi 33.6 79 0.0027 30.3 6.7 39 78-120 101-144 (148)
88 3swk_A Vimentin; cytoskeleton, 33.6 1.5E+02 0.005 28.0 8.2 64 1083-1146 18-81 (86)
89 1x79_B RAB GTPase binding effe 33.5 1.4E+02 0.0047 29.9 8.3 67 1185-1258 6-72 (112)
90 3swf_A CGMP-gated cation chann 33.5 13 0.00045 34.7 1.1 28 1281-1308 22-49 (74)
91 3nmd_A CGMP dependent protein 33.3 77 0.0026 29.6 6.1 47 511-565 20-66 (72)
92 3csx_A Putative uncharacterize 33.0 60 0.0021 30.9 5.4 63 292-354 15-77 (81)
93 3nmd_A CGMP dependent protein 32.9 1E+02 0.0035 28.8 6.8 50 644-724 19-68 (72)
94 3s4r_A Vimentin; alpha-helix, 32.6 2.7E+02 0.0092 26.6 9.9 18 1121-1138 16-33 (93)
95 1x8y_A Lamin A/C; structural p 32.3 65 0.0022 30.2 5.6 57 644-713 3-59 (86)
96 3bas_A Myosin heavy chain, str 32.1 1.5E+02 0.0051 27.9 8.0 31 1088-1118 58-88 (89)
97 2k48_A Nucleoprotein; viral pr 31.6 1.5E+02 0.0052 29.4 8.1 64 1027-1105 36-101 (107)
98 1l8d_A DNA double-strand break 31.5 1.5E+02 0.0052 28.0 8.2 14 630-643 47-60 (112)
99 1a93_B MAX protein, coiled coi 31.4 49 0.0017 27.1 3.9 28 1432-1459 6-33 (34)
100 4dzn_A Coiled-coil peptide CC- 31.4 62 0.0021 25.7 4.3 27 1331-1357 4-30 (33)
101 1ci6_A Transcription factor AT 30.8 71 0.0024 28.5 5.3 33 1435-1467 25-57 (63)
102 1v27_A Regulating synaptic mem 30.6 1.3E+02 0.0046 28.2 7.6 48 64-113 87-138 (141)
103 3he5_B Synzip2; heterodimeric 29.3 87 0.003 26.8 5.2 40 982-1042 8-47 (52)
104 3cvf_A Homer-3, homer protein 29.2 95 0.0032 29.4 6.0 41 974-1014 3-43 (79)
105 3jzy_A Intersectin 2; C2 domai 28.6 65 0.0022 37.1 6.0 51 68-119 449-504 (510)
106 2nq3_A Itchy homolog E3 ubiqui 28.5 38 0.0013 34.5 3.6 59 66-124 94-162 (173)
107 3pyc_A E3 ubiquitin-protein li 28.5 1.2E+02 0.004 28.6 6.8 41 80-120 84-130 (132)
108 3qh9_A Liprin-beta-2; coiled-c 27.9 1.1E+02 0.0037 29.2 6.1 58 664-721 22-79 (81)
109 3cve_A Homer protein homolog 1 27.9 1.4E+02 0.0046 27.9 6.7 38 1428-1465 9-46 (72)
110 2enp_A B/K protein; C2 type 1, 27.8 1.6E+02 0.0056 28.1 7.8 47 62-109 94-142 (147)
111 1wfm_A Synaptotagmin XIII; C2 27.7 96 0.0033 29.7 6.1 46 64-110 87-134 (138)
112 1fxk_A Prefoldin; archaeal pro 27.5 1.9E+02 0.0066 26.9 8.0 30 985-1014 66-95 (107)
113 3cve_A Homer protein homolog 1 27.3 1.1E+02 0.0039 28.4 6.1 54 669-722 15-68 (72)
114 1deq_A Fibrinogen (alpha chain 27.3 2.7E+02 0.0091 32.9 10.5 53 538-602 105-157 (390)
115 1gu4_A CAAT/enhancer binding p 26.8 86 0.0029 29.4 5.3 33 1435-1467 38-70 (78)
116 3q8t_A Beclin-1; autophagy, AT 26.3 2E+02 0.0069 27.6 7.9 74 1067-1140 6-79 (96)
117 2dmg_A KIAA1228 protein; beta- 25.6 1.7E+02 0.0057 27.8 7.4 97 5-109 31-136 (142)
118 1jnm_A Proto-oncogene C-JUN; B 25.3 50 0.0017 29.1 3.3 31 981-1011 26-56 (62)
119 1hjb_A Ccaat/enhancer binding 25.1 1.1E+02 0.0037 29.2 5.8 68 1037-1109 20-87 (87)
120 2ke4_A CDC42-interacting prote 25.0 2.3E+02 0.0077 27.5 8.0 73 587-670 16-88 (98)
121 1s1c_X RHO-associated, coiled- 24.8 72 0.0025 29.7 4.3 31 1435-1465 1-31 (71)
122 4fi5_A Nucleoprotein; structur 24.8 2.1E+02 0.0073 28.6 7.9 64 1027-1105 23-88 (113)
123 2ic6_A Nucleocapsid protein; h 24.6 2.4E+02 0.0084 26.7 7.8 64 1027-1105 6-71 (78)
124 1a25_A CALB, protein kinase C 24.3 43 0.0015 32.3 3.1 45 68-114 99-145 (149)
125 1t3j_A Mitofusin 1; coiled coi 23.8 66 0.0023 31.4 4.1 44 647-690 50-93 (96)
126 1t2k_D Cyclic-AMP-dependent tr 23.5 1.2E+02 0.004 26.6 5.3 32 1435-1466 24-55 (61)
127 3azd_A Short alpha-tropomyosin 23.4 26 0.00089 28.7 1.0 28 1436-1463 7-34 (37)
128 1dip_A Delta-sleep-inducing pe 23.4 35 0.0012 32.0 2.0 27 586-612 15-41 (78)
129 1t2k_D Cyclic-AMP-dependent tr 23.2 62 0.0021 28.4 3.5 30 981-1010 26-55 (61)
130 2ic9_A Nucleocapsid protein; h 22.5 2.7E+02 0.0091 27.3 7.9 65 1027-1106 6-72 (96)
131 3s4r_A Vimentin; alpha-helix, 22.2 3.6E+02 0.012 25.7 8.7 78 1368-1455 13-92 (93)
132 2z0u_A WW domain-containing pr 21.9 61 0.0021 32.3 3.7 95 5-106 50-153 (155)
133 1gk4_A Vimentin; intermediate 21.5 2.9E+02 0.0099 25.7 7.8 49 1218-1273 2-50 (84)
134 2oto_A M protein; helical coil 21.4 6.4E+02 0.022 25.5 14.2 43 1341-1383 34-76 (155)
135 1jnm_A Proto-oncogene C-JUN; B 21.2 1.4E+02 0.0049 26.2 5.4 34 1434-1467 23-56 (62)
136 2z5i_I TM, tropomyosin alpha-1 21.1 1.3E+02 0.0044 25.3 4.7 31 1438-1468 8-38 (40)
137 1m1j_B Fibrinogen beta chain; 21.0 5.5E+02 0.019 30.9 11.9 96 501-607 91-196 (464)
138 1dqv_A Synaptotagmin III; beta 21.0 3.6E+02 0.012 29.0 9.7 58 65-123 84-149 (296)
139 2eqb_B RAB guanine nucleotide 20.9 3.2E+02 0.011 26.7 8.1 57 294-357 7-63 (97)
140 2r83_A Synaptotagmin-1; C2A-C2 20.4 3.7E+02 0.013 28.4 9.4 58 64-122 82-146 (284)
141 3rdl_A Protein kinase C alpha 20.2 68 0.0023 30.1 3.4 103 5-117 23-133 (137)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.39 E-value=0.00052 Score=69.74 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=26.2
Q ss_pred hhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHH
Q 041227 982 MEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIR 1036 (1468)
Q Consensus 982 lE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~ 1036 (1468)
+...+..++.+...+.++|..++.++..+..+.....-.+......+..+..++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (284)
T 1c1g_A 74 AEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMK 128 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555444444444444444444444443
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.94 E-value=1.2e-05 Score=102.80 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhh
Q 041227 1189 NLQREVAHLTEQISA 1203 (1468)
Q Consensus 1189 nLqrEv~~Lt~QiSa 1203 (1468)
.|+.++..|.+++..
T Consensus 1120 ~Le~eie~L~eeLee 1134 (1184)
T 1i84_S 1120 ELESHISDLQEDLES 1134 (1184)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.85 E-value=1.5e-05 Score=101.87 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHHhH
Q 041227 902 VEALRHCQNELENQISDLQKEKSQL 926 (1468)
Q Consensus 902 ~~~l~~~k~ElE~~is~lq~Ek~qL 926 (1468)
+..+.....+++.++..|+.++..+
T Consensus 873 L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 873 QQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455555554444444
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.70 E-value=0.025 Score=60.12 Aligned_cols=170 Identities=25% Similarity=0.316 Sum_probs=119.0
Q ss_pred HHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhH
Q 041227 1005 AQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGL 1084 (1468)
Q Consensus 1005 aql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~l 1084 (1468)
-.+.|.-..-+.+.-++...+.-...+|..=+.++++||++...+..+..+.+.+......|++-+|.- ++..---.
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K---~~~~~~e~ 86 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK---LEHQYAQS 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344555555555555555555556677778889999999999999999999999998888898888764 43333233
Q ss_pred HHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhh
Q 041227 1085 IEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRK 1164 (1468)
Q Consensus 1085 ieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~ 1164 (1468)
.-..+.||+.+..||..+-.|+.+++.||+.-+.-.+.---.+..++++|.||.-.+|.++. |.+||+ |
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~al----LE~El~----E--- 155 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAF----LESELD----E--- 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----H---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHH----H---
Confidence 33689999999999999999999999999999999999999999999999999999999986 445665 1
Q ss_pred hcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhh
Q 041227 1165 HKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISA 1203 (1468)
Q Consensus 1165 ~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSa 1203 (1468)
++.+ -++++.|.-|+-+|..-++.
T Consensus 156 -Ke~l--------------~~~~QRLkdE~rDLk~El~v 179 (189)
T 2v71_A 156 -KESL--------------LVSVQRLKDEARDLRQELAV 179 (189)
T ss_dssp -HHHH--------------HCCC----------------
T ss_pred -HHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 1111 35677777777777766544
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.26 E-value=1.5 Score=47.64 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=88.0
Q ss_pred hhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhh
Q 041227 986 LHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQE 1065 (1468)
Q Consensus 986 ls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qe 1065 (1468)
|..+..+..+|-.++.+|-++|..+.++....+-.+...+..+..++.++.+++.+.+ ++..+....+.+...|.
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~----~~~~ri~~~~~~l~~v~- 87 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ----DTNAKIASIQKKMSEIK- 87 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccC-
Confidence 3444444444445555555555555555555556666666666777777775554443 45556666666664443
Q ss_pred hhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhh
Q 041227 1066 ECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEIS 1145 (1468)
Q Consensus 1066 e~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~is 1145 (1468)
.|-.++ .|-.|-.++...++.|....+++.+....+++.+.+.+..+...-..+..+.+.+...+.+|.
T Consensus 88 -------~~kE~~----aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~ 156 (256)
T 3na7_A 88 -------SERELR----SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIK 156 (256)
T ss_dssp -------SSSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333 455677788888888888888888888888888777776665555555555555444444333
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.88 E-value=1.6 Score=61.93 Aligned_cols=214 Identities=16% Similarity=0.209 Sum_probs=152.3
Q ss_pred HHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhH
Q 041227 1193 EVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQ 1272 (1468)
Q Consensus 1193 Ev~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~ 1272 (1468)
-|..++...-....++.-+|...-+|. ++-=+.-+.....++..+..+|++=|+.|. |....|..|..+|++-+..-
T Consensus 1874 sv~~~s~~~~~~~~R~~yvTP~syLel--i~~y~~ll~~K~~el~~~~~rl~~GL~KL~-et~~~V~~l~~~L~~~~~~L 1950 (3245)
T 3vkg_A 1874 TIGEANIRLLKRQGRQNYVTPRHYLDF--INQVVLLINEKRDQLEEEQLHLNIGLKKLR-DTEAQVKDLQVSLAQKNREL 1950 (3245)
T ss_dssp HHHHHHHHHHHSSSCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566667888888875 334466778888899999999999999998 89999999999999988877
Q ss_pred HHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHH--------------HHHhhhhhHH
Q 041227 1273 EVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQL--------------ERTAQFQDEV 1338 (1468)
Q Consensus 1273 emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQl--------------qk~~~lqdEv 1338 (1468)
+--..+.++|+.-|..-+..-++-|..+...+.++. ...+|+...|... ++++.++.++
T Consensus 1951 ~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~-------~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l 2023 (3245)
T 3vkg_A 1951 DVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLD-------VRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAA 2023 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 777778887777666555555666667777776665 4445566555554 4566677777
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHh-------hhhhhh----hhhhHHHHHHHhh
Q 041227 1339 LSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVS-------ELDDCK----RKKVALQEKVLRL 1407 (1468)
Q Consensus 1339 ~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~s-------eled~k----~sk~sleeKl~rl 1407 (1468)
.+.+..|++++.+...|++.+.-+..+|++..++|..+.+.+..++..+. -|.+.| .+-..++..+..|
T Consensus 2024 ~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 77888888888888888888888888888888888887777766665443 333333 2344566677777
Q ss_pred cCchhHHHh
Q 041227 1408 EGDLAAIEA 1416 (1468)
Q Consensus 1408 e~dl~a~ea 1416 (1468)
=||--..-|
T Consensus 2104 ~GD~LLaaa 2112 (3245)
T 3vkg_A 2104 VGDVVLASA 2112 (3245)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 777433333
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.77 E-value=1.4 Score=46.41 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=102.7
Q ss_pred HHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHH
Q 041227 1053 LQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEA 1132 (1468)
Q Consensus 1053 ~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~ 1132 (1468)
+.+++.++---.|-+.-||-.+..++.++-++-.-|.-||--+.-|..++..|...+..|-+.|.+=++.-.-...++-+
T Consensus 15 L~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~e 94 (168)
T 3o0z_A 15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGD 94 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455667788888888888888888999999999999999999999999999999988888888888999
Q ss_pred HHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHH
Q 041227 1133 LEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQR 1192 (1468)
Q Consensus 1133 LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqr 1192 (1468)
|+.++.++..|+. .+..=+..+.-+++.+-||+..-+---+-|..+-+.+...||.
T Consensus 95 lq~ri~~L~~El~----~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~ 150 (168)
T 3o0z_A 95 LQARITSLQEEVK----HLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQ 150 (168)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999998887775 3334445666778888888766665556666555566655543
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.70 E-value=1.4 Score=47.79 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=45.9
Q ss_pred cchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHH
Q 041227 962 VSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAE 1041 (1468)
Q Consensus 962 vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e 1041 (1468)
|+.|+-+..=..|+++.+ ..+..||.+..++-++|..+++.+..+. ..+..++.++....++
T Consensus 86 v~~~kE~~aL~kEie~~~----~~i~~lE~eile~~e~ie~~~~~l~~~~--------------~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 86 IKSERELRSLNIEEDIAK----ERSNQANREIENLQNEIKRKSEKQEDLK--------------KEMLELEKLALELESL 147 (256)
T ss_dssp CSSSSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 444555554444555444 5666666666666666666666554433 3445555666666666
Q ss_pred HHHhHHHHHHHHHHHHHhH
Q 041227 1042 MEAQKVETKQKLQDMQKRW 1060 (1468)
Q Consensus 1042 ~e~qk~~~kqk~qe~q~~w 1060 (1468)
.++...+++..+.....+.
T Consensus 148 ~~~~~~e~~~e~~~l~~~r 166 (256)
T 3na7_A 148 VENEVKNIKETQQIIFKKK 166 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666655555554444
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.66 E-value=4.8 Score=52.13 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHh--hcCchhhhhhhhHHHHhhhHH------HhHHH
Q 041227 1026 THAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLK--VANPKLQATAEGLIEECSLLQ------KSNAE 1097 (1468)
Q Consensus 1026 s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr--~~N~kLQaT~e~lieec~slQ------~~~~e 1097 (1468)
..|+.+|.-+|...+..+-...-....---+|+.|-....-..|.+ .+--.+|+.......- .-+. +..+.
T Consensus 840 ~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laR-r~~~~Lk~ear~~~~ 918 (1080)
T 2dfs_A 840 DATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK-RELKKLKIEARSVER 918 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHH-HHTTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhHH
Confidence 5566777766665554333322111223345666654444444443 2222556555433211 1111 12234
Q ss_pred HHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhH
Q 041227 1098 LRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKV 1130 (1468)
Q Consensus 1098 Lr~qklelh~~~t~lE~kL~eS~~~f~~~~k~V 1130 (1468)
|++.+..|...+..|..+|++-.+........+
T Consensus 919 l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~ 951 (1080)
T 2dfs_A 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM 951 (1080)
T ss_dssp --------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666655555555444443
No 10
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.65 E-value=3.1 Score=41.30 Aligned_cols=94 Identities=22% Similarity=0.260 Sum_probs=74.0
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhh
Q 041227 1027 HAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLH 1106 (1468)
Q Consensus 1027 ~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh 1106 (1468)
....|+.++.|+..|.+.=|.-+++ .+.- + --.+++||+-...||..+-.|+
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~----~~~e---------------------~---~~~~~~Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEH----QYAQ---------------------S---YKQVSVLEDDLSQTRAIKEQLH 55 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------------------H---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------------------H---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888877765543333 2221 1 2246889999999999999999
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhh
Q 041227 1107 EHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKE 1148 (1468)
Q Consensus 1107 ~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKE 1148 (1468)
.++..||+.-+.-.+.----+..++++|.||.-.+|..+.-|
T Consensus 56 ~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE 97 (111)
T 2v66_B 56 KYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLE 97 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888899999999999999998888644
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.61 E-value=1.6 Score=56.47 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhh----hhhHHHHhhhHHHhHHHHHHHHhhhh
Q 041227 1046 KVETKQKLQDMQKRWLGVQEECEYLKVANPKLQAT----AEGLIEECSLLQKSNAELRKQKVNLH 1106 (1468)
Q Consensus 1046 k~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT----~e~lieec~slQ~~~~eLr~qklelh 1106 (1468)
+..|..++.++|.|. +-+...|..|++. .+.+..||+.|++.+++|+....+.+
T Consensus 923 ~~~LE~kl~eLq~rL-------~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~ 980 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKI-------DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK 980 (1080)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555 4444445555443 35788999999999999988644433
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.43 E-value=3.5 Score=58.70 Aligned_cols=192 Identities=17% Similarity=0.220 Sum_probs=95.5
Q ss_pred hhhhhhhhhhhcchhhhhhhhhhhhhhh---HHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHH
Q 041227 966 RNLESKSLELESSKHEMEVHLHELEEEN---LQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEM 1042 (1468)
Q Consensus 966 ~~le~k~~eles~K~elE~hls~Le~En---~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~ 1042 (1468)
+.+.+|..++...+.-|+.=|.+|..=+ .+|...+..++.+|..-+.|-+...-++......|..-|..+...+++.
T Consensus 1906 ~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~ 1985 (3245)
T 3vkg_A 1906 LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQL 1985 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777776665433 3334444444444444444433333333332222322233333333333
Q ss_pred HHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhh
Q 041227 1043 EAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKG 1122 (1468)
Q Consensus 1043 e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~ 1122 (1468)
..|..+......+.+..+.+|+ |- ..+......+|++|..++..
T Consensus 1986 ~~~~~ei~~~k~~~e~dL~~A~----------Pa--------------------------~Pkr~~l~~ae~~l~~~~~~ 2029 (3245)
T 3vkg_A 1986 DVRNKEIAVQKVKAYADLEKAE----------PT--------------------------GPLREEVEQLENAANELKLK 2029 (3245)
T ss_dssp HHHHHHHHHHHHHHHHCC-------------------------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcC----------CC--------------------------ChHHHHHHHHHHHHHHHHHH
Confidence 3333333332222222222221 11 22333444555555555555
Q ss_pred hhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhhH---HHhhhHHHHHHHH
Q 041227 1123 FSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEKT---VEAQNLQREVAHL 1197 (1468)
Q Consensus 1123 f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek~---vevenLqrEv~~L 1197 (1468)
....-..+..||+++..+.++.+ ....|-+.|-.+-..-+.|+.+|..|++..--||. ..+..|+.....|
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~----~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYA----TLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 55555555566666655544443 34455566666666778899999999988888875 3444454444444
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.15 E-value=0.93 Score=53.26 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=45.2
Q ss_pred HHHHHHhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1400 LQEKVLRLEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEEL 1463 (1468)
Q Consensus 1400 leeKl~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~el 1463 (1468)
++.++.+++.+..++ ......+++|..++++.-.+.++++..+.+|+...+...+.|++++
T Consensus 521 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 521 KLRETQARRTEADAK---QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhh---hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444333333 3334477899999999999999999999999999999999988876
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.35 E-value=20 Score=38.35 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=71.9
Q ss_pred hhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHH
Q 041227 1020 ELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELR 1099 (1468)
Q Consensus 1020 ~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr 1099 (1468)
+++-.+.....|+.++.++..+.+.-|..+++-..+.....+ .||.-+..|.+.+-.|++-.-+|-
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~--------------~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVS--------------VLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777887777777665544333333333232 445555556666777777777777
Q ss_pred HHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 041227 1100 KQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYL 1138 (1468)
Q Consensus 1100 ~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~ 1138 (1468)
..+-.|....++...-|.--..+|..-..+..+||..|.
T Consensus 116 q~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 116 QANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888888888888888888888888888876
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.44 E-value=3.7 Score=48.28 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=27.9
Q ss_pred hhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 041227 1076 KLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYL 1138 (1468)
Q Consensus 1076 kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~ 1138 (1468)
+++.....+..+...+++...+++++.-.+......||.++++-++......+.+..+.+++.
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444555554444444444444444444444
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.52 E-value=7.5 Score=38.58 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=58.1
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 041227 1330 RTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEG 1409 (1468)
Q Consensus 1330 k~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~ 1409 (1468)
|+..++..+-..-..|..+|.|...|--.++.|..+.+.++..|.++...|.+++.--.. -.-.++.+|..||.
T Consensus 16 K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~------~l~~~q~~i~~lE~ 89 (129)
T 3tnu_B 16 KYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL------ALKDARNKLAELEE 89 (129)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 455666677777777888888888888889999999999999998887777666543211 11234556665555
Q ss_pred chhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 041227 1410 DLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLS 1454 (1468)
Q Consensus 1410 dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~ 1454 (1468)
.|. .+|.++.+.-|.-.++---.-.|+.|+.-|++
T Consensus 90 eL~----------~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 90 ALQ----------KAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 34444444433333333334578888877764
No 17
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.17 E-value=6.1 Score=39.36 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=53.6
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 041227 1330 RTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEG 1409 (1468)
Q Consensus 1330 k~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~ 1409 (1468)
|+..++..+-..-..|..++.|...|--.++.|..+.+.++..|.++...|.+++.--.. -.-.++.+|..||.
T Consensus 18 K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~------~l~~~q~~i~~lE~ 91 (131)
T 3tnu_A 18 KTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM------QLAQIQEMIGSVEE 91 (131)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 455666677777777888888888888889999999999999998887777666553221 11234555655555
Q ss_pred chhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 041227 1410 DLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLS 1454 (1468)
Q Consensus 1410 dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~ 1454 (1468)
.|. .+|.++.+.-|.-.++-.-.-.|+.|+.-|++
T Consensus 92 eL~----------~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 92 QLA----------QLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 34444444433333333344578888888764
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.91 E-value=58 Score=34.43 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=91.9
Q ss_pred HHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCch
Q 041227 997 SERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPK 1076 (1468)
Q Consensus 997 serisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~k 1076 (1468)
.++|..||-||..+. +.++-+-++. .+.+-+++|+-.+.-.+.++..++|.+..-.+.....|-.....
T Consensus 5 neKi~~LekQL~E~n---~kLk~EsE~~--------~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~ 73 (168)
T 3o0z_A 5 NEKLSQLQKQLEEAN---DLLRTESDTA--------VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQ 73 (168)
T ss_dssp -----CTHHHHHHHH---HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777776553 2233332222 24456677777777788888888888877777666666666666
Q ss_pred hhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHH
Q 041227 1077 LQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELD 1156 (1468)
Q Consensus 1077 LQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe 1156 (1468)
|||..+.=-..|+--.-. .-+|.|+...|..+|..++-+..-..-..--|-++++.+=++.++-|--|+-+|-
T Consensus 74 LQa~L~qEr~~r~q~se~-------~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLK 146 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEM-------IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLK 146 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666554333333222222 2356778888899998888888777777777777788777777777777777776
Q ss_pred HHH
Q 041227 1157 ALL 1159 (1468)
Q Consensus 1157 ~l~ 1159 (1468)
++=
T Consensus 147 alQ 149 (168)
T 3o0z_A 147 SLQ 149 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=76.61 E-value=28 Score=34.65 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=71.6
Q ss_pred HhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccccccChhHHHHHHHHHHhh
Q 041227 311 LMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKFQARDTDKKINELEDEIKF 390 (1468)
Q Consensus 311 l~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~e~eD~~~lleELrdEL~y 390 (1468)
..-++..|+..+.+.-+...+|......+..|...|...++.=+......- ....++...-.+....+.++...+.=
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~E---E~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAE---ERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777777777777777777666655444433221 12222322233455678888888888
Q ss_pred hhhhchhHHHhHhhhhhhhHHHHHHHHHHHHH
Q 041227 391 QKESNANLAIQLNKTQESNIELISILQELEET 422 (1468)
Q Consensus 391 EKE~NaNL~LQLqKTQESN~ELVlaVQDLEEm 422 (1468)
+.+.|++|.-.-+|++.-+.+|---+.|+|.+
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888887777777766543
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.84 E-value=85 Score=32.72 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=63.0
Q ss_pred hhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhh-hhh--hHhhHHHHH
Q 041227 1081 AEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEIS-SKE--KALNLELDA 1157 (1468)
Q Consensus 1081 ~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~is-sKE--k~l~~ELe~ 1157 (1468)
...+-.-+++|+-+-+.--.+--.+.+....|..+|.++..|...--+.|..||..+.-+-.++. .|+ +.+..+||.
T Consensus 51 L~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 51 LKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444667778887777777777888999999999999999988888888888888876655443 233 345667777
Q ss_pred HHHHhhhhcchh
Q 041227 1158 LLHENRKHKDKS 1169 (1468)
Q Consensus 1158 l~qE~~~~~ek~ 1169 (1468)
.|.+-.....+|
T Consensus 131 tl~el~~~~~~~ 142 (155)
T 2efr_A 131 LEDKVEELLSKN 142 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhcccch
Confidence 776655443333
No 21
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=73.00 E-value=9.9 Score=39.57 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=63.7
Q ss_pred HHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchhHHHhhhhhhHHH
Q 041227 1345 LNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALGSQEAAL 1424 (1468)
Q Consensus 1345 L~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~a~ea~~~~~ael 1424 (1468)
|-+.-..++.+|..|+-+..+---+.+.. -||..+.-...+...+.-...++.|+..|+-.+-.+...-. .+
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~-----~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e---~l 101 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDNSGAIGGN-----IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTE---RL 101 (152)
T ss_dssp ---------------------------CH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcc-----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 44444566777777776666654333332 34555555667778888888999999999999888877665 78
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 041227 1425 KNELAQIRRENSQFQRRIKCLEKEKEDCLSRA 1456 (1468)
Q Consensus 1425 k~el~ri~r~n~e~q~ki~~le~E~ee~~~r~ 1456 (1468)
+-|+.-++=+++.+..+.+.|++||..|..|.
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998774
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=72.13 E-value=27 Score=34.76 Aligned_cols=89 Identities=22% Similarity=0.352 Sum_probs=48.9
Q ss_pred HHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhh
Q 041227 999 RICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQ 1078 (1468)
Q Consensus 999 risgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQ 1078 (1468)
....||.+...|..|+.-...+|+.-........+...+ +-+++.+|..++.+++.|+-+ ....|..|+
T Consensus 35 ~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~----L~~~k~eLe~~l~el~~rlee-------eee~~~~L~ 103 (129)
T 2fxo_A 35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQ----LIKNKIQLEAKVKEMNKRLED-------EEEMNAELT 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 334566666666666666666666655555555444443 345566666666666665533 333444455
Q ss_pred hhhhhHHHHhhhHHHhHHHH
Q 041227 1079 ATAEGLIEECSLLQKSNAEL 1098 (1468)
Q Consensus 1079 aT~e~lieec~slQ~~~~eL 1098 (1468)
+.-..+-.+|+.|.+...++
T Consensus 104 ~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 104 AKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544
No 23
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=70.46 E-value=18 Score=35.98 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=36.3
Q ss_pred hhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhh
Q 041227 1020 ELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKV 1072 (1468)
Q Consensus 1020 ~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~ 1072 (1468)
+..+|+.....||.-....+..+.-|+-.|..-......+++.+|.|.++|.+
T Consensus 53 ~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 53 RAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 45678888899999999999999999999999999999999999999999975
No 24
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=69.21 E-value=9.5 Score=35.57 Aligned_cols=53 Identities=8% Similarity=0.182 Sum_probs=36.6
Q ss_pred hheeeEE-eccCCCccccceeeechhhhccccCccceeeccCCCCCCCeEEEEeee
Q 041227 67 CLIKLVV-TMGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTSLQLKIQC 121 (1468)
Q Consensus 67 KIYKfVV-SmGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGTVLHVtIQ~ 121 (1468)
...+|.| .-+..+..++|++.|+|+++.. ..+....+||... ....+||+++.
T Consensus 70 ~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~-~~~~~~~~~L~~~-~~g~i~~~le~ 123 (126)
T 1rlw_A 70 NVLEITLMDANYVMDETLGTATFTVSSMKV-GEKKEVPFIFNQV-TEMVLEMSLEV 123 (126)
T ss_dssp CEEEEEEEECCSSCCEEEEEEEEEGGGSCT-TCEEEEEEEETTT-EEEEEEEEEEC
T ss_pred CEEEEEEEECCCCCCceeEEEEEEHHHccC-CCcEEEEEEcCCC-ceEEEEEEEEe
Confidence 3456666 3344457899999999999864 4567788999874 33456776654
No 25
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=67.54 E-value=14 Score=35.26 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=34.9
Q ss_pred hhhhheeeEE-e-ccCCCccccceeeechhhhccccCccceeeccCCCC
Q 041227 64 IEECLIKLVV-T-MGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCN 110 (1468)
Q Consensus 64 ~~EKIYKfVV-S-mGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cn 110 (1468)
+.....+|.| . -..++..+||++.|+|+++.........-+||+.-.
T Consensus 87 ~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135 (138)
T ss_dssp GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred hccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence 4455667776 2 234567899999999999988877778889996544
No 26
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=66.88 E-value=74 Score=32.90 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=52.6
Q ss_pred cccchhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHhHHhHHHHhHHHHHHHHHHHHH
Q 041227 488 QQDDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAEWRSRIAEKEENIVNLEAKLSEVLC 567 (1468)
Q Consensus 488 l~D~~~LEmqmEQL~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e~~~kls~kE~eI~~L~~KL~~~~~ 567 (1468)
++|+...+.-.++..++-..|..-++.|+..+++-.. -..+|.++-..+...+...+.....-+.|+.++-.
T Consensus 64 lkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~--------L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~ 135 (152)
T 4fla_A 64 ITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQ--------LARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQ 135 (152)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777778888888888888888877776653 23566677777777777777777777777776654
Q ss_pred H
Q 041227 568 A 568 (1468)
Q Consensus 568 ~ 568 (1468)
+
T Consensus 136 v 136 (152)
T 4fla_A 136 V 136 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.15 E-value=1e+02 Score=32.21 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=88.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHh
Q 041227 1327 QLERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLR 1406 (1468)
Q Consensus 1327 Qlqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~r 1406 (1468)
=+.+.+.|.|++..++..|..++.....||. +.+++..|..++.....++..| ...+.+.+.-|...+....+
T Consensus 11 Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~----~r~~~~~l~~~~~~~~~e~~~L---~~~l~~E~~~R~~aE~~~~~ 83 (154)
T 2ocy_A 11 SVDKQSHLEEQLNKSLKTIASQKAAIENYNQ----LKEDYNTLKRELSDRDDEVKRL---REDIAKENELRTKAEEEADK 83 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH----HHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999887776666654 3455666666666655555544 45666778888888888888
Q ss_pred hcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041227 1407 LEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEELKQTK 1467 (1468)
Q Consensus 1407 le~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~elk~~k 1467 (1468)
++.++----|+--.+| .+=.+-=||+--.++++...|+....|-..++..+.+.|.-.|
T Consensus 84 ie~ElEeLTasLFeEA--N~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 84 LNKEVEDLTASLFDEA--NNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8875432222222111 1112333666667788888888888888888888888876544
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.08 E-value=49 Score=32.65 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=42.3
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhHHHHH
Q 041227 1331 TAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTSQQVV 1387 (1468)
Q Consensus 1331 ~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~q~~~ 1387 (1468)
-..+++++..||+-++.+---+-.||+-++.|.+|..=|| ..+...|..||.-+
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK---k~heeEl~eLq~qi 117 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK---KLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999987766664 45666777666443
No 29
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=63.21 E-value=21 Score=34.52 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=46.8
Q ss_pred cccccccCccccccccchhcccccCcchhhhhhhheeeEE-ec-cCCCccccceeeechhhhccccCc-----cceeecc
Q 041227 34 SKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTS-----VPLTLPL 106 (1468)
Q Consensus 34 eKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP-----~sVSLPL 106 (1468)
++..-++-+..|...+.=.+. + .+...+|.| .- ..++..+||++.|+|.++...... ....+||
T Consensus 62 T~v~~~t~nP~wne~f~f~v~---~------~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L 132 (153)
T 3b7y_A 62 TKTIKKSLNPKWNEEILFRVH---P------QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVL 132 (153)
T ss_dssp CCCCSSCSSCCCCEEEEEEEC---T------TTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEEC
T ss_pred CccccCCCCCCCCCEEEEEec---C------CCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCccccccccccccc
Confidence 333334556677655332221 1 134455666 22 335688999999999999876642 1367788
Q ss_pred CCC----CCCCeEEEEeee
Q 041227 107 KKC----NSGTSLQLKIQC 121 (1468)
Q Consensus 107 K~c----nsGTVLHVtIQ~ 121 (1468)
... .....|||+++.
T Consensus 133 ~~~~~~~~~~G~i~l~l~~ 151 (153)
T 3b7y_A 133 HPRSHKSRVKGYLRLKMTY 151 (153)
T ss_dssp BCSSTTCCCCSEEEEEEEE
T ss_pred ccccCCCCcceEEEEEEEE
Confidence 543 334677887764
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.39 E-value=22 Score=36.20 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=31.3
Q ss_pred HHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041227 1423 ALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEELKQTK 1467 (1468)
Q Consensus 1423 elk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~elk~~k 1467 (1468)
.||.+|...+..+.+..+++..|.+++.+|+.++..||.+++-.+
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~~ 137 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDSK 137 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566677777777777777777777777777777777777775443
No 31
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=59.97 E-value=7 Score=38.24 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=39.0
Q ss_pred eeeEE-eccC-CC-ccccceeeechhhhccccCccceeeccCCCCCCCeEEEEee
Q 041227 69 IKLVV-TMGS-SR-SGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTSLQLKIQ 120 (1468)
Q Consensus 69 YKfVV-SmGS-SR-SgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGTVLHVtIQ 120 (1468)
.+|-| .-+. ++ ..+||++.|+|++......+..--+||.....|.-.|++++
T Consensus 95 L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g~~~~lkv~ 149 (153)
T 3fbk_A 95 LLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTKHLKVA 149 (153)
T ss_dssp EEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGGGTCCCBCC
T ss_pred EEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhcccccceec
Confidence 55666 3232 44 78999999999999877788889999998888887777554
No 32
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=57.93 E-value=58 Score=34.51 Aligned_cols=135 Identities=12% Similarity=0.092 Sum_probs=85.8
Q ss_pred HHHHHhhHHHHHh-hhhhhhccchhhhccc-hh---hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHH
Q 041227 996 LSERICGLEAQLR-YLTNERESSRLELENS-AT---HAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYL 1070 (1468)
Q Consensus 996 LserisgLEaql~-~lt~E~es~~l~l~nS-~s---~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~L 1070 (1468)
|-+-|+.|..+.+ |+.+.--+..-+|++| +. .+..=+++++++...++.++..+......++.+...+| +|.
T Consensus 17 Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~---e~~ 93 (174)
T 2p22_A 17 LQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQ---QFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH---HHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 7888999999998 7777777766666555 11 11111233333333334444444433333333221111 122
Q ss_pred hhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHH
Q 041227 1071 KVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALE 1134 (1468)
Q Consensus 1071 r~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE 1134 (1468)
+. |+.=.--+++++-.+.-+.++.=++--.-..+.--.-.|..=|..-+..|..|.|.|-.|=
T Consensus 94 ~~-~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~La 156 (174)
T 2p22_A 94 ST-SHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELA 156 (174)
T ss_dssp TS-SCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred hc-CCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 22 2211125678888899999888888888888888888999999999999999999987763
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.99 E-value=1.2e+02 Score=29.29 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1439 QRRIKCLEKEKEDCLSRAQAIEEE 1462 (1468)
Q Consensus 1439 q~ki~~le~E~ee~~~r~q~lE~e 1462 (1468)
.+....-+.++.-|.||+|.||++
T Consensus 78 ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 78 EENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 334455666777777888877753
No 34
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=55.91 E-value=8.5 Score=34.33 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=28.5
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhh
Q 041227 980 HEMEVHLHELEEENLQLSERICGLEAQLRYLTN 1012 (1468)
Q Consensus 980 ~elE~hls~Le~En~qLserisgLEaql~~lt~ 1012 (1468)
.+|+..+.+|+.+|.+|..+|+.|+.++.||.+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999888753
No 35
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.46 E-value=1.8e+02 Score=35.57 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=55.8
Q ss_pred hHHHHHHhHHhHHHHhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhh
Q 041227 539 HYEAEWRSRIAEKEENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTEENLALLFKLKE 618 (1468)
Q Consensus 539 ~~e~e~~~kls~kE~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtdEnl~l~~klkE 618 (1468)
+++..|...-.+++..|.-|+.++...+. +. -.|.+=|+.+.+|||-||+|+. -|+..
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQls--nI----------rvLQsnLedq~~kIQRLEvDId----------iqirs 160 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQ--HI----------QLLQKNVRAQLVDMKRLEVDID----------IKIRS 160 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HH----------HHHHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHH--HH----------HHHHHHHHHHHHHHHHHHHHHH----------HHHHh
Confidence 44444444444899999999999998883 33 2466779999999999999998 56665
Q ss_pred hccccccCCCCCCCCCCCCccccchhHHHHHhHhH
Q 041227 619 SGKDLLTGGASSHECPDNKSVFESESEVVQLKSQI 653 (1468)
Q Consensus 619 s~~~~~~~~~s~~~~~~~~~~~~~es~~~~l~~q~ 653 (1468)
-+ .+|..+-.+.-.=-+|..+..|+
T Consensus 161 CK----------gsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 161 CR----------GSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp GG----------GTBSCCCCCCCCHHHHHHHHHHH
T ss_pred cc----------ccccchheeecchHHHHHHHHHH
Confidence 44 36655555543444555555554
No 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=52.90 E-value=97 Score=30.57 Aligned_cols=74 Identities=22% Similarity=0.122 Sum_probs=52.1
Q ss_pred HHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHH
Q 041227 1084 LIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDA 1157 (1468)
Q Consensus 1084 lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~ 1157 (1468)
|.=++..++-...++|..-.+--..++.+|..+...++-..+....-..||.++.++.++|..--+.-..|+..
T Consensus 39 l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~e 112 (119)
T 3ol1_A 39 VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQE 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666665544444566788999888888888888888889999998888888755555555443
No 37
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=52.67 E-value=6.9 Score=37.08 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=47.5
Q ss_pred ccCccccccccchhcccccCcchhhhhhhheeeEE-ec-cCCCccccceeeechhhhccccCccceeeccC-CCCCCCeE
Q 041227 39 RNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLK-KCNSGTSL 115 (1468)
Q Consensus 39 RnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK-~cnsGTVL 115 (1468)
.+-+..|..++.=.+. + .....+|.| .- ..++..+||++.|+|+++.....+....+||. +......|
T Consensus 52 ~~~nP~Wne~f~f~v~---~------~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i 122 (136)
T 1wfj_A 52 MGTTPEWNETFIFTVS---E------GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEI 122 (136)
T ss_dssp CCSSCEEEEEEEEEEE---S------SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEE
T ss_pred CCCCCccCcEEEEEEC---C------CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEE
Confidence 3556777655433322 1 234556666 22 23568899999999999966555556677875 22233567
Q ss_pred EEEeeeecC
Q 041227 116 QLKIQCLTP 124 (1468)
Q Consensus 116 HVtIQ~Lt~ 124 (1468)
||.|+....
T Consensus 123 ~l~l~~~p~ 131 (136)
T 1wfj_A 123 WVALSFKPS 131 (136)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEeC
Confidence 888876543
No 38
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=52.43 E-value=88 Score=32.62 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=58.0
Q ss_pred hhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q 041227 988 ELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWL 1061 (1468)
Q Consensus 988 ~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~ws 1061 (1468)
-||.--..-|+|...+|.|++.||+--.-..---+.++-.|.-|+..|.+++.++.+.|...+.-..+|-.-+.
T Consensus 60 sLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~ 133 (155)
T 2efr_A 60 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLED 133 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566788888999999999988888888888888889999999999999998887776666655554443
No 39
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.15 E-value=18 Score=34.64 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=33.8
Q ss_pred hhhheeeEE-ec-cCCCccccceeeechhhhccccCccceeeccCCCCCCC
Q 041227 65 EECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGT 113 (1468)
Q Consensus 65 ~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGT 113 (1468)
.....+|-| .- ..++..+||++.|+|+++.... +...-+||..+..|+
T Consensus 91 ~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~~W~~L~~~~~~s 140 (141)
T 2d8k_A 91 VQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ-MQTFWKDLKPSGPSS 140 (141)
T ss_dssp TTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTS-CEEEEECCEECCCCC
T ss_pred ccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCC-CccEEEECcCCCCCC
Confidence 344555655 22 2356789999999999987654 677889998776553
No 40
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.78 E-value=36 Score=32.36 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=42.2
Q ss_pred HhhcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041227 1405 LRLEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEELKQT 1466 (1468)
Q Consensus 1405 ~rle~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~elk~~ 1466 (1468)
..|+...-|+.++.. ||+++|-.|-.++.+.+.-+..|.++...++.|+++++..
T Consensus 17 SALeaEIqAKQ~i~E-------ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 17 EALEEEVLTRQSLSR-------EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555443 6899999999999999999999999988888888887653
No 41
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.88 E-value=1e+02 Score=35.52 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=22.9
Q ss_pred hHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1421 EAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEEL 1463 (1468)
Q Consensus 1421 ~aelk~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~el 1463 (1468)
++++-.|..+.+|.-..++.+|+.+.+|++.+..-++.+...+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 4445555555555555555555555555555555444444433
No 42
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.70 E-value=22 Score=31.03 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=27.5
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1426 NELAQIRRENSQFQRRIKCLEKEKEDCLSRAQ 1457 (1468)
Q Consensus 1426 ~el~ri~r~n~e~q~ki~~le~E~ee~~~r~q 1457 (1468)
.+...+|++|.++++|+..|.++++++.+|+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35668899999999999999999999988764
No 43
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.92 E-value=49 Score=31.76 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=64.1
Q ss_pred hhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHH
Q 041227 966 RNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEME 1043 (1468)
Q Consensus 966 ~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e 1043 (1468)
..|+..+..+....+.|--.|.+||.+...|..-|..++++.+.|..+-+.+--..-.-.-....++|+..-+.+.+.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888898999999999999999999999999999888877777766667777777777776666554
No 44
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.50 E-value=47 Score=31.47 Aligned_cols=58 Identities=21% Similarity=0.404 Sum_probs=36.6
Q ss_pred hheeeEE-ec-cCCCccccceeeechhhhccccC-cccee-eccCCCCC---CCeEEEEeeeecC
Q 041227 67 CLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKT-SVPLT-LPLKKCNS---GTSLQLKIQCLTP 124 (1468)
Q Consensus 67 KIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtk-P~sVS-LPLK~cns---GTVLHVtIQ~Lt~ 124 (1468)
...+|-| .- ..++..+||.+.|+|.++..... ...+. +||...+. +..|||.|+..-+
T Consensus 70 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 70 SSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp CEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 4455555 22 23467899999999999865532 22233 55755432 3678998887643
No 45
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.37 E-value=21 Score=35.80 Aligned_cols=100 Identities=16% Similarity=0.266 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHHHHHHHhhh
Q 041227 1255 QTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKVQLERTAQF 1334 (1468)
Q Consensus 1255 ~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~LkvQlqk~~~l 1334 (1468)
..-|-.|.-++...|++-+-++..+-. .-..|++.|+.||..|--..-.+|++..|...|+.++......
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~----------~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQR----------VVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555544443 4457889999999999988889999999999999999988777
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 041227 1335 QDEVLSLKKLLNEAKFENERLEASFQILSG 1364 (1468)
Q Consensus 1335 qdEv~~lk~sL~~~kfek~rLe~sl~~~S~ 1364 (1468)
.-+-..+...+-++.+.-.--|.-|+=|-+
T Consensus 84 ~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe 113 (120)
T 3i00_A 84 REDTEKAQRSLSEIERKAQANEQRYSKLKE 113 (120)
T ss_dssp CC----------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666666666665544444444443333
No 46
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=46.45 E-value=40 Score=31.89 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=34.7
Q ss_pred heeeEE-ec-cCCCccccceeeechhhhccccCccceeeccCCCC----CCCeEEEEeeee
Q 041227 68 LIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCN----SGTSLQLKIQCL 122 (1468)
Q Consensus 68 IYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cn----sGTVLHVtIQ~L 122 (1468)
..+|-| .- ..++..+||.+.|++.++... ....+||..-+ ...-|||.|+.+
T Consensus 74 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~---~~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 74 VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG---QPNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp EEEEEEEEEETTEEEEECCBCEEEGGGCCSS---CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred EEEEEEEECCCCCCCCeeEEEEEEHHHccCC---CceEEEeecCCCCCccceEEEEEEEEE
Confidence 455555 22 334688999999999998653 24677886432 446778888754
No 47
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=46.01 E-value=28 Score=33.27 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=37.3
Q ss_pred hheeeEE-e-ccCCCccccceeeechhhhccccC-ccceeeccCCCCCCCeEEEEeeeecC
Q 041227 67 CLIKLVV-T-MGSSRSGIVGEALVNLASYMNSKT-SVPLTLPLKKCNSGTSLQLKIQCLTP 124 (1468)
Q Consensus 67 KIYKfVV-S-mGSSRSgiLGEasINLAdYaeAtk-P~sVSLPLK~cnsGTVLHVtIQ~Lt~ 124 (1468)
...+|.| . -..++..+||.+.|+|+++..... +...-+||+. ..-|||.|..-.+
T Consensus 77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~---~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP---EGKVYVIIDLSGS 134 (136)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS---SCEEEEEEEEEEE
T ss_pred CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC---CeEEEEEEEEEec
Confidence 3455555 1 123567899999999999987643 3466778864 3458998876543
No 48
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=45.86 E-value=29 Score=32.75 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=48.2
Q ss_pred hhhhcccccchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhhh
Q 041227 669 RLSTYENRSDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELFQ 723 (1468)
Q Consensus 669 ~~~~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~~ 723 (1468)
+-++|+.+..+|+-.|.+-+..-.++..+++....-|--+--++++|+++|...-
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 4456778888999999999999999999999999999999999999999997654
No 49
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.55 E-value=17 Score=37.24 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhhHHHHHH---HHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHHHHhhhhh
Q 041227 1107 EHCAVLEAQLGESEKGFSSLSMKVEALEE---KYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQMYMEK 1183 (1468)
Q Consensus 1107 ~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~---kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~llnq~~~Ek 1183 (1468)
|-.+.||..|-.+++......-+|..+|. +|. .+.++|..+-.+......++..+...=-.++.++
T Consensus 1 ~~~s~LEd~L~~~r~~l~~~~~~~~~le~l~~~l~-----------~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~ 69 (135)
T 2e7s_A 1 GPLGSLEEQLNKSLKTIASQKAAIENYNQLKEDYN-----------TLKRELSDRDDEVKRLREDIAKENELRTKAEEEA 69 (135)
T ss_dssp -----CCSTTTHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhh
Q 041227 1184 TVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLR 1251 (1468)
Q Consensus 1184 ~vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~ 1251 (1468)
. .++.||+.||+.+ .+|=..+-++|=++-..+---...|+..+.+....+.....||.+|.
T Consensus 70 ~----~ie~ElE~LTasL---FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 70 D----KLNKEVEDLTASL---FDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp H----HHHHHHHHHHHHH---HHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred H----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 50
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=45.27 E-value=46 Score=31.73 Aligned_cols=97 Identities=14% Similarity=0.200 Sum_probs=52.9
Q ss_pred ccccccCC----cc-ce-eEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-ec-c
Q 041227 5 IWELQVPK----GW-DK-LVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-G 76 (1468)
Q Consensus 5 FhATQVP~----Gw-Dk-LfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-G 76 (1468)
+.|..+|. |. |- ..|++.| +.++...+.++..-++-+..|...+ .|. ......+.....+|-| .- .
T Consensus 36 ~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~~~kT~v~~~t~nP~wne~f----~f~-~~~~~~~~~~~l~i~V~d~d~ 109 (142)
T 2chd_A 36 IRAKGLKPMDSNGLADPYVKLHLLP-GASKSNKLRTKTLRNTRNPVWNETL----QYH-GITEEDMQRKTLRISVCDEDK 109 (142)
T ss_dssp EEEESCCCCCTTSCCCEEEEEEEES-CCSGGGEEECCCCCSCSSCEEEEEE----EEE-SCCHHHHHHCEEEEEEEEECT
T ss_pred EEecCCCCCCCCCCCCCEEEEEEEc-CCCCcceeeCCcCCCCCCCcCcCEE----EEc-ccCHHHccCCEEEEEEEECCC
Confidence 56777773 33 33 2233333 2233333333333344455565432 221 1333445556677777 22 3
Q ss_pred CCCccccceeeechhhhccccCccceeeccCC
Q 041227 77 SSRSGIVGEALVNLASYMNSKTSVPLTLPLKK 108 (1468)
Q Consensus 77 SSRSgiLGEasINLAdYaeAtkP~sVSLPLK~ 108 (1468)
.++..+||++.|+|++..... +....+||.+
T Consensus 110 ~~~d~~iG~~~i~l~~l~~~~-~~~~~~~L~~ 140 (142)
T 2chd_A 110 FGHNEFIGETRFSLKKLKANQ-RKNFNICLER 140 (142)
T ss_dssp TSCEEEEEEEEEEGGGCCTTC-CEEEEEECBC
T ss_pred CCCCcEEEEEEEEHHHcCCCC-ccEEEEeccc
Confidence 345789999999999987544 6788888864
No 51
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=44.01 E-value=1.7e+02 Score=27.52 Aligned_cols=77 Identities=18% Similarity=0.353 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccc
Q 041227 293 KIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKF 372 (1468)
Q Consensus 293 tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~ 372 (1468)
.|+.+..+-..+.-.-+.+...++.+|.-+-.|....+....++.+||...|.+- +.+.
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~-------------l~r~-------- 66 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS-------------LARL-------- 66 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH-------------HHHH--------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------------HHHH--------
Confidence 4455555555566666666677888888888999998888888888877766541 1111
Q ss_pred cccChhHHHHHHHHHHhhhhh
Q 041227 373 QARDTDKKINELEDEIKFQKE 393 (1468)
Q Consensus 373 e~eD~~~lleELrdEL~yEKE 393 (1468)
|.-..++-|++||.|.|-
T Consensus 67 ---dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 67 ---DLERKVESLQEEIAFLKK 84 (86)
T ss_dssp ---HHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHHHhh
Confidence 333456778888888763
No 52
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.89 E-value=36 Score=33.34 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=22.3
Q ss_pred hHHHHHhhhHHhhhHHHHHHHHHHHhhhh
Q 041227 331 SLEMELSKSHAQCDGLKQEIEWLKKLAKE 359 (1468)
Q Consensus 331 dLs~EvS~Lk~ERD~LK~E~EqLKss~k~ 359 (1468)
.|..+|..|+.||+.|+++++.|...+.+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888877764
No 53
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.42 E-value=51 Score=32.63 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=45.8
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 041227 985 HLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRW 1060 (1468)
Q Consensus 985 hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~w 1060 (1468)
.|..|+.|..-|--..+.||++|+.+-. .+.+++.+....+..|..++.++..+|+.|..+.. .|....-++
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq-~LlnvKl~L 115 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQKAKQDMARLLREYQ-ELMNTKLAL 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4455555555555555666666654433 34567777778888888888888888888877663 444444444
No 54
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=42.98 E-value=3.5e+02 Score=29.21 Aligned_cols=141 Identities=21% Similarity=0.237 Sum_probs=83.9
Q ss_pred HHHhhhHHHhHHHHHHHHhhhhhhhHH-------HHHHhhhhh--hhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHH
Q 041227 1085 IEECSLLQKSNAELRKQKVNLHEHCAV-------LEAQLGESE--KGFSSLSMKVEALEEKYLSMLEEISSKEKALNLEL 1155 (1468)
Q Consensus 1085 ieec~slQ~~~~eLr~qklelh~~~t~-------lE~kL~eS~--~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~EL 1155 (1468)
+|=+.+|++....|+..+..|++.+.. +|+.+.+.= .-|..|.++|.+|+.-++.+|-
T Consensus 18 ~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLs------------- 84 (190)
T 3thf_A 18 DELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLS------------- 84 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 445678999999999999988887754 344444332 2467777888888876664442
Q ss_pred HHHHHHhhhhcchhhhHHHHHHHhhhhhHHHhhhHHHHHHHHHHhhhhhh------cccccchhHHH---------HHHh
Q 041227 1156 DALLHENRKHKDKSVTEESLLNQMYMEKTVEAQNLQREVAHLTEQISATY------DEKDGTHSEAV---------LEVS 1220 (1468)
Q Consensus 1156 e~l~qE~~~~~ek~~~~~~llnq~~~Ek~vevenLqrEv~~Lt~QiSat~------dere~~~s~av---------~EvS 1220 (1468)
.-.|+.|.++-|+..--||. .|..=..-|..|....+ |.|++.-+..+ ..--
T Consensus 85 ---------Ls~RLaRvenaL~~~~~Er~----sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~ 151 (190)
T 3thf_A 85 ---------LSERLAQTESSLETRQQERG----ALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYD 151 (190)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ---------HHhHHHHHHHHHccChhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 11234444444433322222 22222233444444443 45554443332 2223
Q ss_pred hhhhhhHHHHHHHHHHHhHhhhhhcchhhhh
Q 041227 1221 HLRADKAVLEAALQEVQGKLKLSESNLGTLR 1251 (1468)
Q Consensus 1221 ~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~ 1251 (1468)
++=+-||.|=..-.++.+++++.|.||..|.
T Consensus 152 ~fv~mKa~Ll~eqReLddkIklgeEQL~~L~ 182 (190)
T 3thf_A 152 YFINMKAKLIADARDLAVRIKGSEEQLSSLS 182 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 4456788888888889999999998888876
No 55
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=42.94 E-value=2.3e+02 Score=27.74 Aligned_cols=94 Identities=23% Similarity=0.327 Sum_probs=71.5
Q ss_pred HHHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHh--hcCchhHHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHH
Q 041227 1367 EELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLR--LEGDLAAIEALGSQEAALKNELAQIRRENSQFQRRIKC 1444 (1468)
Q Consensus 1367 eeLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~r--le~dl~a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~ 1444 (1468)
.+|..+++-....++..+.+-++++ +.|..|+.++.+ .+...-+.+..++-+ .+++||..=+..-..+++.+..
T Consensus 4 i~LLRK~aE~~KqL~~~~q~~~e~e---~~k~eL~~~~~~~~~~~~~k~~eq~~~le-~lk~eL~~~~~el~~lq~~l~~ 79 (107)
T 2no2_A 4 ADLLRKNAEVTKQVSMARQAQVDLE---REKKELEDSLERISDQGQRKTQEQLEVLE-SLKQELATSQRELQVLQGSLET 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777666 445688999988 677777888877755 5777888777777778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041227 1445 LEKEKEDCLSRAQAIEEELK 1464 (1468)
Q Consensus 1445 le~E~ee~~~r~q~lE~elk 1464 (1468)
.++++..+..+...++.+..
T Consensus 80 ~~~~~~~l~~~~~~l~~Ek~ 99 (107)
T 2no2_A 80 SAQSEANWAAEFAELEKERD 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888877654
No 56
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.91 E-value=34 Score=33.54 Aligned_cols=28 Identities=39% Similarity=0.387 Sum_probs=25.0
Q ss_pred hhhhhhhhhhHHHHHHHhhHHHHHhhhh
Q 041227 984 VHLHELEEENLQLSERICGLEAQLRYLT 1011 (1468)
Q Consensus 984 ~hls~Le~En~qLserisgLEaql~~lt 1011 (1468)
.-|..|+.||..|-++|..||++|-..+
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999996654
No 57
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=42.83 E-value=43 Score=33.42 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=42.7
Q ss_pred ccCccccccccchhcccccCcchhhhhhhheeeEE-ec-cCCCccccceeeechhhhccccCccc-----eeeccCC---
Q 041227 39 RNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVP-----LTLPLKK--- 108 (1468)
Q Consensus 39 RnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~s-----VSLPLK~--- 108 (1468)
++-+-.|...++=.|. + .....+|.| .- ..++..+||+|.|+|++......... ..+||..
T Consensus 55 ~t~nP~Wne~f~f~v~----~-----~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~ 125 (176)
T 3m7f_B 55 KSLNPKWNEEILFRVL----P-----QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSH 125 (176)
T ss_dssp SCSSCEEEEEEEEEEC----T-----TTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSST
T ss_pred CCCCCcccceEEEEEc----C-----CCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCC
Confidence 4556677755432221 1 123445555 22 33467899999999999987654311 4667753
Q ss_pred -CCCCCeEEEEeeeecC
Q 041227 109 -CNSGTSLQLKIQCLTP 124 (1468)
Q Consensus 109 -cnsGTVLHVtIQ~Lt~ 124 (1468)
......|||+|..+..
T Consensus 126 ~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 126 KSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp TCCCCSEEEEEEEECC-
T ss_pred CCccCEEEEEEEEEEeC
Confidence 2245689999987654
No 58
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=42.68 E-value=33 Score=32.92 Aligned_cols=100 Identities=7% Similarity=-0.007 Sum_probs=53.0
Q ss_pred ccccccCC---cc-ce-eEEEEEEcccCcccccccccccccCccccccccch-hcccccCcchhhhhhhheeeEE-e-cc
Q 041227 5 IWELQVPK---GW-DK-LVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSE-SIWIPQDNALKEIEECLIKLVV-T-MG 76 (1468)
Q Consensus 5 FhATQVP~---Gw-Dk-LfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyE-Tvkl~qD~KTkk~~EKIYKfVV-S-mG 76 (1468)
++|..+|. |. |- ..|++.|...+....||. |..++| +|+|. +..|. ......+..+...|.| . -.
T Consensus 27 ~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~---v~~~t~---nP~wnE~f~f~-~v~~~~l~~~~L~~~V~d~d~ 99 (134)
T 2b3r_A 27 MHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTK---ISRKTR---NPTFNEMLVYS-GYSKETLRQRELQLSVLSAES 99 (134)
T ss_dssp EEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECC---CCCSCS---SCEEEEEEEEE-SCCHHHHTTCEEEEEEEECCS
T ss_pred EEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCC---cCcCCC---CCCCccEEEEC-CcCHHHhCcCEEEEEEEECCC
Confidence 45666663 33 33 334566643344444443 333332 44442 33332 1122234456667777 2 23
Q ss_pred CCCccccceeeechhhhccccCccceeeccCCCCCC
Q 041227 77 SSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSG 112 (1468)
Q Consensus 77 SSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsG 112 (1468)
.++..+||++.|+|++.... .+...-+||....+|
T Consensus 100 ~~~~~~lG~~~i~l~~l~~~-~~~~~W~~L~~~~~g 134 (134)
T 2b3r_A 100 LRENFFLGGITLPLKDFNLS-KETVKWYQLTAATYL 134 (134)
T ss_dssp SSCCEEEEEEEEEGGGSCTT-SCEEEEEECBC----
T ss_pred CCCCcEEEEEEEEhhhccCC-CCcceeEECCCccCC
Confidence 45678999999999998653 456777888876655
No 59
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.31 E-value=16 Score=31.88 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHhHHHHHHhh
Q 041227 587 EVDVLKQKVLELEKDCNELTEENLALLFKLK 617 (1468)
Q Consensus 587 Eie~Lk~kvqeLE~dc~ELtdEnl~l~~klk 617 (1468)
++++|++.+++|...+.+|+.++=+|=-+|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777888888888888888877777755554
No 60
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.97 E-value=54 Score=32.59 Aligned_cols=72 Identities=25% Similarity=0.266 Sum_probs=44.9
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 041227 985 HLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRW 1060 (1468)
Q Consensus 985 hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~w 1060 (1468)
.|..|+.|..-|--..+.||++|+.+-. .+.+++.+....+..|..++.++..+|+.|..+.. .|....-++
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq-~Ll~vKl~L 117 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK-ILLDVKTRL 117 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4445555555555555566666554433 34566777777888888888888888888877653 444444443
No 61
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=41.96 E-value=2.3e+02 Score=27.72 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=33.0
Q ss_pred HhhhhHHHHHHHhhhhhHHHH-------HHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHH
Q 041227 1320 EISSLKVQLERTAQFQDEVLS-------LKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQ 1378 (1468)
Q Consensus 1320 E~s~LkvQlqk~~~lqdEv~~-------lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~ 1378 (1468)
.+..++-|...+..++.||-+ |+..++....++..|.+.+ ..+-++|..|..
T Consensus 45 ~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~-------~~l~~Ek~~L~~ 103 (107)
T 2no2_A 45 GQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF-------AELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 344566777777777777666 6666666666666665555 666666666554
No 62
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.96 E-value=2e+02 Score=28.67 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=36.3
Q ss_pred hhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhhHhhhhhhhccccccccChhHHHHHHHHHHhhhhhhchhHHHhHhhhh
Q 041227 327 ARQASLEMELSKSHAQCDGLKQEIEWLKKLAKESEVQSTATENLKFQARDTDKKINELEDEIKFQKESNANLAIQLNKTQ 406 (1468)
Q Consensus 327 KrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~~~~~q~~~~~lk~e~eD~~~lleELrdEL~yEKE~NaNL~LQLqKTQ 406 (1468)
|+..+|-..+..|+.|+|.+|.-+.+.+. ++...+..|.+||.-.+..|.+|...+..+-
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~--------------------e~~~~~~~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYA--------------------QSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777766655432 1233455666666655555555555555544
Q ss_pred hhh
Q 041227 407 ESN 409 (1468)
Q Consensus 407 ESN 409 (1468)
-.|
T Consensus 63 q~N 65 (111)
T 2v66_B 63 QAN 65 (111)
T ss_dssp HHH
T ss_pred Hhc
Confidence 444
No 63
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.34 E-value=1.8e+02 Score=29.17 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhhhh
Q 041227 292 VKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAKE 359 (1468)
Q Consensus 292 ~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~k~ 359 (1468)
..|+.|+.|+.+|.-.-+.++.|-|..=-|+-. +-..|..|+..-+..++..+.||+.|+.-...
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~---~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKG---HVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999988888888876643333322 23468888888887777777777777755543
No 64
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=40.20 E-value=44 Score=31.16 Aligned_cols=94 Identities=13% Similarity=0.219 Sum_probs=46.1
Q ss_pred ccccccCC----cc-ce-eEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-ec--
Q 041227 5 IWELQVPK----GW-DK-LVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-- 75 (1468)
Q Consensus 5 FhATQVP~----Gw-Dk-LfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-- 75 (1468)
+.|..+|. |. |- ..|++.|...|....||. +.-++-+..|.. +..|.- ...........+|-| .-
T Consensus 25 ~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~-v~~~t~nP~wne----~f~f~~-~~~~~~~~~~l~~~V~d~d~ 98 (129)
T 2bwq_A 25 LGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK-TVKKTLEPKWNQ----TFIYSP-VHRREFRERMLEITLWDQAR 98 (129)
T ss_dssp EEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECC-CCSSBSSCEEEE----EEEECS-CCGGGGGGCEEEEEEEEC--
T ss_pred EEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecc-cccCCCCCcccc----EEEEcc-CCHHHhcCCeEEEEEEECCc
Confidence 45667663 32 32 344556644444444433 222333444543 333321 111223445666666 22
Q ss_pred -cCCCccccceeeechhhhccccCccceeecc
Q 041227 76 -GSSRSGIVGEALVNLASYMNSKTSVPLTLPL 106 (1468)
Q Consensus 76 -GSSRSgiLGEasINLAdYaeAtkP~sVSLPL 106 (1468)
|..+..+||++.|+|++..... ..--+||
T Consensus 99 ~~~~~~~~lG~~~i~l~~l~~~~--~~~W~~L 128 (129)
T 2bwq_A 99 VREEESEFLGEILIELETALLDD--EPHWYKL 128 (129)
T ss_dssp -----CEEEEEEEEEGGGCCCSS--CEEEEEC
T ss_pred CcCcCCceeEEEEEEccccCCCc--CCccEEC
Confidence 2224789999999999876532 3444554
No 65
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=39.75 E-value=48 Score=31.11 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=29.5
Q ss_pred chhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 041227 1017 SRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRW 1060 (1468)
Q Consensus 1017 ~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~w 1060 (1468)
+..++.+....+..|..++.++.++|+.|..+. |.|..+.-+|
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EY-q~LlnvK~~L 68 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKLAL 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 345666777777788888888888888887765 3444444443
No 66
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.79 E-value=2.3e+02 Score=26.76 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=20.4
Q ss_pred HhhhhchHHHHHHHhhHHHhhhhHHHHHhhhhh
Q 041227 1360 QILSGDYEELKAERISFMQKISTSQQVVSELDD 1392 (1468)
Q Consensus 1360 ~~~S~e~eeLkaek~~~~~kis~~q~~~seled 1392 (1468)
.-+..+...|......+..+|..+.+.+..++.
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333445555666666667777777777766643
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.73 E-value=1.7e+02 Score=33.75 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=58.7
Q ss_pred HHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhhccchhhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhh
Q 041227 904 ALRHCQNELENQISDLQKEKSQLEESIEIMLREGTVASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEME 983 (1468)
Q Consensus 904 ~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e~~i~skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE 983 (1468)
.++..+.++|..++.++.+....+..+.....+ .|
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~e 398 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ---------------------------------------------IE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---------------------------------------------SC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhch---------------------------------------------hh
Confidence 566777888888888887777665444332222 11
Q ss_pred -hhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHH---HHhHHHHHHHHHHH
Q 041227 984 -VHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEM---EAQKVETKQKLQDM 1056 (1468)
Q Consensus 984 -~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~---e~qk~~~kqk~qe~ 1056 (1468)
-|..+.-.-...+-.+|...|+-...+-.||+-.+-.+......+..|+.+-.|++-++ +.+..+.+++|++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 399 LQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 23333334444555566666655555555555554455555555555555555555433 33444444444443
No 68
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.73 E-value=81 Score=29.99 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=45.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhH
Q 041227 1328 LERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTS 1383 (1468)
Q Consensus 1328 lqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~ 1383 (1468)
|..|+.||-||-.||..-+.+..+...+...-..+-.++.-|+.+...+-.+|..+
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888888888777778888899999988888888765
No 69
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.71 E-value=47 Score=31.92 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=26.9
Q ss_pred hhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 041227 1018 RLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRW 1060 (1468)
Q Consensus 1018 ~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~w 1060 (1468)
..++.+....+..|..++.++.++|+.|..+. |.|....-+|
T Consensus 36 ~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EY-q~LlnvKl~L 77 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMAEIRDQMQQQLNDY-EQLLDVKLAL 77 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34556666677777777888888888876665 2444444444
No 70
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=37.77 E-value=2.8e+02 Score=26.49 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041227 1440 RRIKCLEKEKEDCLSRAQAIEE 1461 (1468)
Q Consensus 1440 ~ki~~le~E~ee~~~r~q~lE~ 1461 (1468)
.....-+.+..-|.||+|.||+
T Consensus 79 k~~~~AE~evasLnRriqllEE 100 (101)
T 3u59_A 79 KKATDAEAEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3444556777778888887775
No 71
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=37.67 E-value=43 Score=31.82 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=32.8
Q ss_pred hhhhheeeEE-ec-cCCCccccceeeechhhhccccCccceeeccCCCCC
Q 041227 64 IEECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNS 111 (1468)
Q Consensus 64 ~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cns 111 (1468)
+.....+|-| .- ..++..+||.+.|+|++.... .+...-+||.....
T Consensus 93 l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~-~~~~~W~~L~~~~~ 141 (142)
T 1rh8_A 93 LMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL-DNTPRWYPLKEQTE 141 (142)
T ss_dssp HTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGG-TTCCEEEECBCCCC
T ss_pred ccCCEEEEEEEECCCCCCCceEEEEEEeccccccC-CCCCeEEECCccCC
Confidence 3455666666 22 345678999999999987653 45677888887654
No 72
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.07 E-value=2.3e+02 Score=28.71 Aligned_cols=82 Identities=23% Similarity=0.281 Sum_probs=52.2
Q ss_pred hhhhhhHHHHHHhhhhhhhhh-------hhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHHHHH
Q 041227 1104 NLHEHCAVLEAQLGESEKGFS-------SLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLL 1176 (1468)
Q Consensus 1104 elh~~~t~lE~kL~eS~~~f~-------~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~~ll 1176 (1468)
|.++--.+|+.+|.+++..|. -|-.+|+.|=+.|.-..-.. +..-.||. ..| --|
T Consensus 22 ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~----q~~vqeLq----------gEI----~~L 83 (121)
T 3mq7_A 22 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG----QKKVEELE----------GEI----TTL 83 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----------HHH----HHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----------HHH----HHH
Confidence 345555688999999988874 57788998877665221111 11122221 222 137
Q ss_pred HHhhhhhHHHhhhHHHHHHHHHHhhhh
Q 041227 1177 NQMYMEKTVEAQNLQREVAHLTEQISA 1203 (1468)
Q Consensus 1177 nq~~~Ek~vevenLqrEv~~Lt~QiSa 1203 (1468)
|+.--+..++|+.|.++...|...|-.
T Consensus 84 nq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 84 NHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 887888889999999998877766544
No 73
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.72 E-value=1.4e+02 Score=30.27 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=56.9
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHh
Q 041227 1080 TAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKAL 1151 (1468)
Q Consensus 1080 T~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l 1151 (1468)
+|=|+.+|.-.++...+.|+.+.-++......|=.+|-..+......-+.++.|..++..+++.|.-.|..+
T Consensus 62 aALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 62 MYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344888888888888888888888888877778788888888888888888888888888888877665444
No 74
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=36.28 E-value=18 Score=31.14 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=19.0
Q ss_pred HHHHHHhhhCcchHhhhhhhhhhccc
Q 041227 1281 KLLNLLEDVKPNEEKFRGTIRGLELK 1306 (1468)
Q Consensus 1281 k~~~lle~~kSneeklk~t~~~LElk 1306 (1468)
++-+||.+|.|-.-|+|.+|..||.+
T Consensus 20 r~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 20 RFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777888888888754
No 75
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.76 E-value=26 Score=32.77 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=28.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhh
Q 041227 981 EMEVHLHELEEENLQLSERICGLEAQLRYLTN 1012 (1468)
Q Consensus 981 elE~hls~Le~En~qLserisgLEaql~~lt~ 1012 (1468)
+++..+..|+.||..|-.+|..|..++.+|.+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999998863
No 76
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=35.52 E-value=1.1e+02 Score=28.87 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhhhhchHHHHH
Q 041227 1336 DEVLSLKKLLNEAKFENERLEASFQILSGDYEELKA 1371 (1468)
Q Consensus 1336 dEv~~lk~sL~~~kfek~rLe~sl~~~S~e~eeLka 1371 (1468)
.|+-.++..|......+..|+..+..+..+..+|-.
T Consensus 21 eel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ 56 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFG 56 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333333333
No 77
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=35.38 E-value=37 Score=34.52 Aligned_cols=41 Identities=7% Similarity=0.090 Sum_probs=32.8
Q ss_pred CCccccceeeechhhhccc---cCccceeeccCCCCCCCeEEEEeee
Q 041227 78 SRSGIVGEALVNLASYMNS---KTSVPLTLPLKKCNSGTSLQLKIQC 121 (1468)
Q Consensus 78 SRSgiLGEasINLAdYaeA---tkP~sVSLPLK~cnsGTVLHVtIQ~ 121 (1468)
++..++|.++|+|.++... ..+...-+||.. +.-|||.|+.
T Consensus 112 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~---~G~i~l~l~~ 155 (157)
T 2fk9_A 112 GYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP---EGKVFVVITL 155 (157)
T ss_dssp SSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS---SCEEEEEEEE
T ss_pred CCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC---CcEEEEEEEE
Confidence 4678999999999999876 256778899964 5577998875
No 78
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.32 E-value=1.1e+02 Score=28.10 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=22.8
Q ss_pred hHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhh
Q 041227 1083 GLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSL 1126 (1468)
Q Consensus 1083 ~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~ 1126 (1468)
.+-++-.+|++-+.-|...--...+++...-.+|.++.+...+|
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~~~ 81 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATDC 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34455555555555555555555555555555565555554443
No 79
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=35.26 E-value=1e+02 Score=29.27 Aligned_cols=68 Identities=22% Similarity=0.372 Sum_probs=55.1
Q ss_pred cccccchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHHhh
Q 041227 869 EFKSDVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLRE 936 (1468)
Q Consensus 869 e~e~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~~e 936 (1468)
.||.+|...=.....-.-||+.||..+..-.++.+.++...-.|...+..|+.|...-.+++..++..
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666667788889999888888899999999999999999999999999998777653
No 80
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=35.23 E-value=1.6e+02 Score=33.78 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=46.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHh-hcCchhhhhhh-hHHHHhhhHHHhHHHHHHH
Q 041227 1024 SATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLK-VANPKLQATAE-GLIEECSLLQKSNAELRKQ 1101 (1468)
Q Consensus 1024 S~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr-~~N~kLQaT~e-~lieec~slQ~~~~eLr~q 1101 (1468)
.+..+..+++++.+.=.++-++. +.+..-..+|++++++|..---+| .+|. +- -+|-=--||.+--..--+.
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 444 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAAT-----ANHTVMALMASLDAEKAQGQKK 444 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhh-----cchhHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444443 455667778888888887654442 2221 11 1111112333322222245
Q ss_pred HhhhhhhhHHHHHHhhhh
Q 041227 1102 KVNLHEHCAVLEAQLGES 1119 (1468)
Q Consensus 1102 klelh~~~t~lE~kL~eS 1119 (1468)
.-||++++|.|+++|.+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777777777777654
No 81
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.09 E-value=40 Score=32.46 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=29.9
Q ss_pred hhhhhhhhcchhhhhhhhhhhhh----hhHHHHHHHhhHHHHHhhhhhhhcc
Q 041227 969 ESKSLELESSKHEMEVHLHELEE----ENLQLSERICGLEAQLRYLTNERES 1016 (1468)
Q Consensus 969 e~k~~eles~K~elE~hls~Le~----En~qLserisgLEaql~~lt~E~es 1016 (1468)
+.++..|++-++.||..|.++|. +..++-..|+.||++|..+..+.+.
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888876 4456667788888888776655444
No 82
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=34.74 E-value=2.5e+02 Score=27.33 Aligned_cols=70 Identities=23% Similarity=0.197 Sum_probs=55.3
Q ss_pred hhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHh
Q 041227 1082 EGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKAL 1151 (1468)
Q Consensus 1082 e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l 1151 (1468)
|-||---+-|.++++.||-+.-+...+.+.|++++++.=+...+--..-=.||..|+-+-+|-|--|-.|
T Consensus 21 eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkL 90 (101)
T 1d7m_A 21 EQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKL 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3455566678888899999999999999999999999988888777777788888888777766554443
No 83
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.72 E-value=51 Score=31.47 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041227 1435 NSQFQRRIKCLEKEKEDCLSRAQAIEEELKQT 1466 (1468)
Q Consensus 1435 n~e~q~ki~~le~E~ee~~~r~q~lE~elk~~ 1466 (1468)
+.+++.+...|++||..|..+++.|+.++...
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888888888887654
No 84
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=34.03 E-value=1.3e+02 Score=27.92 Aligned_cols=57 Identities=28% Similarity=0.296 Sum_probs=36.4
Q ss_pred HhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 041227 1000 ICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRW 1060 (1468)
Q Consensus 1000 isgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~w 1060 (1468)
.+.||++|+.+.. .+.+++.+....+..|..++.++.++|+.|..+. |.|....-++
T Consensus 10 ~~sLE~~l~e~e~---~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EY-q~LlnvK~~L 66 (84)
T 1gk4_A 10 NESLERQMREMEE---NFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY-QDLLNVKMAL 66 (84)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 3444555444332 2345677778888888888888888888887766 3444444443
No 85
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.81 E-value=2.9e+02 Score=26.54 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHH
Q 041227 1048 ETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNA 1096 (1468)
Q Consensus 1048 ~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~ 1096 (1468)
-+|.|.+-|+..--.|++..+-+....-.+-..+.-+-+|-.+||+-+.
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3566777777666666666665543333333333344455555554443
No 86
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=33.66 E-value=2.4e+02 Score=26.92 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhh
Q 041227 1046 KVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFS 1124 (1468)
Q Consensus 1046 k~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~ 1124 (1468)
+.-+|.|.+-|+..--.|++..+-+..-.-.+-..++-+-++-.+|++-+.-|..+--...+++...-.+|.++.+...
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777666666666655443333333344445555555555444444433344444444444444444433
No 87
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=33.65 E-value=79 Score=30.29 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=27.0
Q ss_pred CCccccceeeechhhhccccCccceeeccCCC-----CCCCeEEEEee
Q 041227 78 SRSGIVGEALVNLASYMNSKTSVPLTLPLKKC-----NSGTSLQLKIQ 120 (1468)
Q Consensus 78 SRSgiLGEasINLAdYaeAtkP~sVSLPLK~c-----nsGTVLHVtIQ 120 (1468)
++..+||.+.|++.+.. .+...-+||..- ..| -|||+|.
T Consensus 101 ~~~~~lG~~~i~l~~l~---~~~~~w~~L~~~~~~~~~~G-~i~l~l~ 144 (148)
T 3kwu_A 101 ESDDFLGQTIIEVRTLS---GEMDVWYNLDKRTDKSAVSG-AIRLHIS 144 (148)
T ss_dssp CSSEEEEEEEEEGGGCC---SEEEEEEECBCSSTTCCCCC-EEEEEEE
T ss_pred CCCccEEEEEEEHHHCc---CCCCEEEEcccCCCCCCCce-EEEEEEE
Confidence 68899999999999983 334566777532 234 5677664
No 88
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.61 E-value=1.5e+02 Score=27.97 Aligned_cols=64 Identities=22% Similarity=0.111 Sum_probs=54.8
Q ss_pred hHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhh
Q 041227 1083 GLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISS 1146 (1468)
Q Consensus 1083 ~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~iss 1146 (1468)
.+.=+...++-...++|..-.+=...++.+|..+.--++-..+....=..||.++.|+.++|+.
T Consensus 18 ~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 18 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677788888888887777777889999999999999999999999999999999999874
No 89
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=33.51 E-value=1.4e+02 Score=29.85 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=40.4
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHH
Q 041227 1185 VEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKI 1258 (1468)
Q Consensus 1185 vevenLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki 1258 (1468)
-.+..||.++..|.+|++.+-++|..+-.. +..-+..-....+.+.+++..+|+.|.+||.-+..--
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~-------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q 72 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF-------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAK 72 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999988877666544322 2222333334444555566666666666665544433
No 90
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=33.47 E-value=13 Score=34.74 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=22.9
Q ss_pred HHHHHHhhhCcchHhhhhhhhhhccccc
Q 041227 1281 KLLNLLEDVKPNEEKFRGTIRGLELKLK 1308 (1468)
Q Consensus 1281 k~~~lle~~kSneeklk~t~~~LElklk 1308 (1468)
++-+||..|.|-.-|+|.+|..||.+++
T Consensus 22 rfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 22 RFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777788888889999999998877
No 91
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.26 E-value=77 Score=29.57 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHhHHhHHHHhHHHHHHHHHHH
Q 041227 511 TVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAEWRSRIAEKEENIVNLEAKLSEV 565 (1468)
Q Consensus 511 ~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e~~~kls~kE~eI~~L~~KL~~~ 565 (1468)
+|+.|+..|..|+++|.... ..=++...+|..|+.+|..|+..|+..
T Consensus 20 ti~eLq~~L~~K~eELr~kd--------~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRD--------ALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888888888888765422 111346678999999999999988653
No 92
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=33.03 E-value=60 Score=30.87 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHH
Q 041227 292 VKIEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLK 354 (1468)
Q Consensus 292 ~tIEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLK 354 (1468)
+.|+.||.+++-|.+.|-...++|..|.-.+=.--.+--+++.+.-..+.+-+.+|+++..+.
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999988877666566666777788888888888888776655
No 93
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.93 E-value=1e+02 Score=28.79 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=35.6
Q ss_pred hHHHHHhHhHhhhHHHHHHHHHHHHhhhhcccccchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhhh
Q 041227 644 SEVVQLKSQICKLEEELQERNALIERLSTYENRSDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELFQ 723 (1468)
Q Consensus 644 s~~~~l~~q~~~leee~~~~~~~~~~~~~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~~ 723 (1468)
+.+-+|+-.+.+..++++.+... ++....++.++..+|..|+.+|.-|+
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~-------------------------------I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDAL-------------------------------IDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667777777777777777553 34445566788888999999998887
Q ss_pred h
Q 041227 724 G 724 (1468)
Q Consensus 724 ~ 724 (1468)
+
T Consensus 68 S 68 (72)
T 3nmd_A 68 S 68 (72)
T ss_dssp T
T ss_pred c
Confidence 6
No 94
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.61 E-value=2.7e+02 Score=26.56 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=15.5
Q ss_pred hhhhhhhhhHHHHHHHHH
Q 041227 1121 KGFSSLSMKVEALEEKYL 1138 (1468)
Q Consensus 1121 ~~f~~~~k~Ve~LE~kl~ 1138 (1468)
-+|+.|..+|-+||..=.
T Consensus 16 dRlAsyIdKVR~LEqqN~ 33 (93)
T 3s4r_A 16 DRFANLIDKVRFLEQQNK 33 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 489999999999998755
No 95
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=32.35 E-value=65 Score=30.22 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=34.9
Q ss_pred hHHHHHhHhHhhhHHHHHHHHHHHHhhhhcccccchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHH
Q 041227 644 SEVVQLKSQICKLEEELQERNALIERLSTYENRSDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIA 713 (1468)
Q Consensus 644 s~~~~l~~q~~~leee~~~~~~~~~~~~~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~ 713 (1468)
.++..|++|...||..+...+. ....++..|.....+||.+|...+.+...+.-+..
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~-------------~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLED-------------SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp ---------CTTHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776666544 24567888888888889888888887777665543
No 96
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.15 E-value=1.5e+02 Score=27.92 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=20.8
Q ss_pred hhhHHHhHHHHHHHHhhhhhhhHHHHHHhhh
Q 041227 1088 CSLLQKSNAELRKQKVNLHEHCAVLEAQLGE 1118 (1468)
Q Consensus 1088 c~slQ~~~~eLr~qklelh~~~t~lE~kL~e 1118 (1468)
|.-.+-....|-.+|.+|++.+..|++.|.+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555566667777777777777777654
No 97
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.62 E-value=1.5e+02 Score=29.39 Aligned_cols=64 Identities=30% Similarity=0.387 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCc-hh-hhhhhhHHHHhhhHHHhHHHHHHHHhh
Q 041227 1027 HAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANP-KL-QATAEGLIEECSLLQKSNAELRKQKVN 1104 (1468)
Q Consensus 1027 ~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~-kL-QaT~e~lieec~slQ~~~~eLr~qkle 1104 (1468)
-+..||++|. ..|.|.+-..|||.+..+.. ..+| .+ +.|..+=-.+-+.||.-.++||+|--+
T Consensus 36 ~ieeLQ~Ei~----~~E~QL~iArQKLkdAe~~~-----------E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 36 TLQELQENIT----AHEQQLVTARQKLKDAEKAV-----------EVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh-----------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888887 67889999999999887765 2233 33 344555556678888888888887654
Q ss_pred h
Q 041227 1105 L 1105 (1468)
Q Consensus 1105 l 1105 (1468)
.
T Consensus 101 ~ 101 (107)
T 2k48_A 101 L 101 (107)
T ss_dssp H
T ss_pred H
Confidence 3
No 98
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.48 E-value=1.5e+02 Score=28.00 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=10.2
Q ss_pred CCCCCCCCccccch
Q 041227 630 SHECPDNKSVFESE 643 (1468)
Q Consensus 630 ~~~~~~~~~~~~~e 643 (1468)
.++||-=+++...+
T Consensus 47 g~~CPvCgs~l~~~ 60 (112)
T 1l8d_A 47 KGKCPVCGRELTDE 60 (112)
T ss_dssp SEECTTTCCEECHH
T ss_pred CCCCCCCCCcCCHH
Confidence 45799888887643
No 99
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=31.40 E-value=49 Score=27.10 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=12.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1432 RRENSQFQRRIKCLEKEKEDCLSRAQAI 1459 (1468)
Q Consensus 1432 ~r~n~e~q~ki~~le~E~ee~~~r~q~l 1459 (1468)
||.|...|+.|..|...|.-|..++..|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 4445555544444444444444444333
No 100
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=31.36 E-value=62 Score=25.66 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=21.5
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhHHHHH
Q 041227 1331 TAQFQDEVLSLKKLLNEAKFENERLEA 1357 (1468)
Q Consensus 1331 ~~~lqdEv~~lk~sL~~~kfek~rLe~ 1357 (1468)
|+.|..||-+||+++...|||..-|..
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566777888999999999998876653
No 101
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.85 E-value=71 Score=28.46 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041227 1435 NSQFQRRIKCLEKEKEDCLSRAQAIEEELKQTK 1467 (1468)
Q Consensus 1435 n~e~q~ki~~le~E~ee~~~r~q~lE~elk~~k 1467 (1468)
..+++.+...|+.+|.+|..++..|+.++...|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777788888888888888877775543
No 102
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=30.65 E-value=1.3e+02 Score=28.23 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=32.8
Q ss_pred hhhhheeeEE-ec---cCCCccccceeeechhhhccccCccceeeccCCCCCCC
Q 041227 64 IEECLIKLVV-TM---GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGT 113 (1468)
Q Consensus 64 ~~EKIYKfVV-Sm---GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGT 113 (1468)
......+|-| .- |..+..+||.+.|+|++.... ...--+||...+.|.
T Consensus 87 ~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~--~~~~W~~L~~~~~g~ 138 (141)
T 1v27_A 87 FRERMLEITLWDQARVREEESEFLGEILIELETALLD--DEPHWYKLQTHDSGP 138 (141)
T ss_dssp GGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCS--SEEEEEECBCCSSCC
T ss_pred hcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCC--CCCceEECcccccCC
Confidence 3445666766 22 222388999999999997653 366778888777664
No 103
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.30 E-value=87 Score=26.81 Aligned_cols=40 Identities=38% Similarity=0.522 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHHHHHHHH
Q 041227 982 MEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEM 1042 (1468)
Q Consensus 982 lE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~r~~~e~ 1042 (1468)
|-..|..|...|.||-.--..||. .|.||.|+|.|+++|+
T Consensus 8 lrkkiarlkkdnlqlerdeqnlek---------------------iianlrdeiarlenev 47 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEK---------------------IIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHH---------------------HHHHHHHHHHHHHHHH
No 104
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=29.24 E-value=95 Score=29.35 Aligned_cols=41 Identities=22% Similarity=0.414 Sum_probs=27.6
Q ss_pred hhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhh
Q 041227 974 ELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNER 1014 (1468)
Q Consensus 974 eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~ 1014 (1468)
.|++...++--.+-++|.+|-.|-++|.+||.+|..=-.++
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q 43 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAER 43 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778889999999999999999999876544333
No 105
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=28.62 E-value=65 Score=37.10 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=36.0
Q ss_pred heeeEE-ec-cCCCccccceeeechhhhccc---cCccceeeccCCCCCCCeEEEEe
Q 041227 68 LIKLVV-TM-GSSRSGIVGEALVNLASYMNS---KTSVPLTLPLKKCNSGTSLQLKI 119 (1468)
Q Consensus 68 IYKfVV-Sm-GSSRSgiLGEasINLAdYaeA---tkP~sVSLPLK~cnsGTVLHVtI 119 (1468)
..+|.| .- ..++..++|.|+|++++.... ..|...-+||++..+|.| ||.+
T Consensus 449 ~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i-~l~~ 504 (510)
T 3jzy_A 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEV-WVRF 504 (510)
T ss_dssp EEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEE-EEEE
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceE-EEEE
Confidence 355655 22 335678999999999998753 335777899998888864 5554
No 106
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=28.50 E-value=38 Score=34.47 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=39.3
Q ss_pred hhheeeEE-ec-cCCCccccceeeechhhhccccC----ccceeeccCCCC----CCCeEEEEeeeecC
Q 041227 66 ECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKT----SVPLTLPLKKCN----SGTSLQLKIQCLTP 124 (1468)
Q Consensus 66 EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtk----P~sVSLPLK~cn----sGTVLHVtIQ~Lt~ 124 (1468)
.....|.| .- ..++..+||++.|++.++..... ...+.+||+..+ ...-|+|.+..+.-
T Consensus 94 ~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 94 VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 44456666 22 23467799999999999876432 346788886542 23458898888754
No 107
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=28.50 E-value=1.2e+02 Score=28.59 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=30.8
Q ss_pred ccccceeeechhhhccccCccceeeccCCCC------CCCeEEEEee
Q 041227 80 SGIVGEALVNLASYMNSKTSVPLTLPLKKCN------SGTSLQLKIQ 120 (1468)
Q Consensus 80 SgiLGEasINLAdYaeAtkP~sVSLPLK~cn------sGTVLHVtIQ 120 (1468)
..+||.+.|.+++......+....+||..-+ ...-|||.++
T Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~ 130 (132)
T 3pyc_A 84 AGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ 130 (132)
T ss_dssp TTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred CCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence 5899999999999877777666778886542 1346777765
No 108
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=27.87 E-value=1.1e+02 Score=29.21 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=33.6
Q ss_pred HHHHHhhhhcccccchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhh
Q 041227 664 NALIERLSTYENRSDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLEL 721 (1468)
Q Consensus 664 ~~~~~~~~~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~ 721 (1468)
+-|+.++.+|.-|.+++|+.=..|.-+---=.+++...+..|+.++-+|..|+.+|.+
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 3444444444444444444433333333333367777788888888888888888743
No 109
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.85 E-value=1.4e+02 Score=27.92 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=24.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041227 1428 LAQIRRENSQFQRRIKCLEKEKEDCLSRAQAIEEELKQ 1465 (1468)
Q Consensus 1428 l~ri~r~n~e~q~ki~~le~E~ee~~~r~q~lE~elk~ 1465 (1468)
|--....|..+.++++.|++..++++.+-..+..+||.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444557777777777777777777665555555543
No 110
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.78 E-value=1.6e+02 Score=28.12 Aligned_cols=47 Identities=19% Similarity=0.058 Sum_probs=30.8
Q ss_pred hhhhhhheeeEEe--ccCCCccccceeeechhhhccccCccceeeccCCC
Q 041227 62 KEIEECLIKLVVT--MGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKC 109 (1468)
Q Consensus 62 kk~~EKIYKfVVS--mGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~c 109 (1468)
..+..+..+|-|= -..++..+||.+.|+|++.... .+...-.||...
T Consensus 94 ~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~ 142 (147)
T 2enp_A 94 LEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLV-KGGHWWKALIPS 142 (147)
T ss_dssp HHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTT-TCCCEEECCBCC
T ss_pred HHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCC-CCccEEEEeecC
Confidence 3445566777772 2335677999999999988543 344566677543
No 111
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=27.66 E-value=96 Score=29.74 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=30.9
Q ss_pred hhhhheeeEE-e-ccCCCccccceeeechhhhccccCccceeeccCCCC
Q 041227 64 IEECLIKLVV-T-MGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCN 110 (1468)
Q Consensus 64 ~~EKIYKfVV-S-mGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cn 110 (1468)
+..+..+|.| . -..++..+||++.|+|+++.- ..+...-.||....
T Consensus 87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~-~~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV-PLGAAQWGELKTSG 134 (138)
T ss_dssp STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSS-CTTCCEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccC-cccccceeeCcCCC
Confidence 4455667766 2 234678899999999999742 34566667776543
No 112
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.49 E-value=1.9e+02 Score=26.89 Aligned_cols=30 Identities=23% Similarity=0.117 Sum_probs=18.2
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHhhhhhhh
Q 041227 985 HLHELEEENLQLSERICGLEAQLRYLTNER 1014 (1468)
Q Consensus 985 hls~Le~En~qLserisgLEaql~~lt~E~ 1014 (1468)
.+..|+.....+...|..|+.++.++..+-
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l 95 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556677777777776665543
No 113
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.28 E-value=1.1e+02 Score=28.40 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=47.5
Q ss_pred hhhhcccccchHHHHHHhhhhhhcchhhHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 041227 669 RLSTYENRSDDLENQLQAFKDKVCYLDGELCKSRFRAQEQEVQIAALQQQLELF 722 (1468)
Q Consensus 669 ~~~~~~~k~~dlel~~~~fk~~~~~le~~l~~~~~~~~~~~~ei~~l~~~l~~~ 722 (1468)
+-++|+.+..+|+-.|.+-+..-.++..+++....-|--+--++++|+++|...
T Consensus 15 ~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 15 RNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 444677788889999999999999999999999999999999999999999664
No 114
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.27 E-value=2.7e+02 Score=32.88 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=42.1
Q ss_pred hhHHHHHHhHHhHHHHhHHHHHHHHHHHHHHhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHhh
Q 041227 538 MHYEAEWRSRIAEKEENIVNLEAKLSEVLCAQALKEKSFGNEDDHDLVKEVDVLKQKVLELEKDC 602 (1468)
Q Consensus 538 ~~~e~e~~~kls~kE~eI~~L~~KL~~~~~~~~~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc 602 (1468)
.+++..|..-..++|..|.-|+.++..-+. +. .-|..=|+.+.+|||-||.|+
T Consensus 105 ~dndn~~~e~s~eLe~~i~~lk~~V~~q~~--~i----------r~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 105 NNNDNTFKQINEDLRSRIEILRRKVIEQVQ--RI----------NLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhH--HH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 456666777788999999999999988775 33 235566899999999999998
No 115
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.83 E-value=86 Score=29.37 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041227 1435 NSQFQRRIKCLEKEKEDCLSRAQAIEEELKQTK 1467 (1468)
Q Consensus 1435 n~e~q~ki~~le~E~ee~~~r~q~lE~elk~~k 1467 (1468)
..+++++...|++||..|..+++.|..++...+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999886554
No 116
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.29 E-value=2e+02 Score=27.58 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=60.3
Q ss_pred hhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhH
Q 041227 1067 CEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSM 1140 (1468)
Q Consensus 1067 ~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~ 1140 (1468)
.+.|...-.+|...-..|+.+...|.+-.+.+..+...+...+..|+.+=..--+.|.+|-..+-.++..+.|+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454455566777779999999999999999999999999999999988888888888888877777777754
No 117
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.62 E-value=1.7e+02 Score=27.82 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=50.2
Q ss_pred ccccccCC----ccce-eEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-e---c
Q 041227 5 IWELQVPK----GWDK-LVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-T---M 75 (1468)
Q Consensus 5 FhATQVP~----GwDk-LfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-S---m 75 (1468)
+.|..+|. |.|- ..|++.|...+....|| +..-.+-+..|..++ .|. .....+..+..+|.| . +
T Consensus 31 ~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT-~v~~~t~nP~wne~f----~f~--v~~~~l~~~~L~i~V~d~d~~ 103 (142)
T 2dmg_A 31 HACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKT-HVSKKTLNPVFDQSF----DFS--VSLPEVQRRTLDVAVKNSGGF 103 (142)
T ss_dssp EEEECCCCSSTTCCCEEEEEEEESCCCSSSCEEC-CCCCSCSSCEEEEEE----EEC--CCHHHHHHCEEEEEEEECCCS
T ss_pred EEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccC-CccCCCCCCCcCceE----EEE--ecHHHhCcCEEEEEEEECCCc
Confidence 56667663 3333 23344543322233333 322233345555433 222 222345556677777 2 2
Q ss_pred cCCCccccceeeechhhhccccCccceeeccCCC
Q 041227 76 GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKC 109 (1468)
Q Consensus 76 GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~c 109 (1468)
|+.+..+||.+.|+|++..... +..--+||...
T Consensus 104 ~~~~~~~iG~~~i~l~~~~~~~-~~~~W~~L~~~ 136 (142)
T 2dmg_A 104 LSKDKGLLGKVLVALASEELAK-GWTQWYDLTED 136 (142)
T ss_dssp SCCSCCCCEEEEEECCCSTTTT-CBCCBCCCBCS
T ss_pred cccCCcEEEEEEEecccccccc-cccceeeccCC
Confidence 3323469999999999876443 56666777544
No 118
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.33 E-value=50 Score=29.08 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=22.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhHHHHHhhhh
Q 041227 981 EMEVHLHELEEENLQLSERICGLEAQLRYLT 1011 (1468)
Q Consensus 981 elE~hls~Le~En~qLserisgLEaql~~lt 1011 (1468)
+||.-+..|+.+|..|...|..|..++..|.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777788888777777777776664
No 119
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.10 E-value=1.1e+02 Score=29.24 Aligned_cols=68 Identities=25% Similarity=0.349 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhhhhhHHHHhhhHHHhHHHHHHHHhhhhhhh
Q 041227 1037 RLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHC 1109 (1468)
Q Consensus 1037 r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT~e~lieec~slQ~~~~eLr~qklelh~~~ 1109 (1468)
|-.+-.-+++---|.|..+++. +...++|...|..|.+.++.|-.|...|......+.-+-+..-|.|
T Consensus 20 R~rNN~AarrSR~krk~r~~e~-----~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~~~~~ 87 (87)
T 1hjb_A 20 RERNNIAVRKSRDKAKMRNLET-----QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSGHC 87 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhccccCC
Confidence 4455555666656666655544 3377888889999999998888888888777766665555444443
No 120
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.04 E-value=2.3e+02 Score=27.51 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHhHHHHHHhhhhccccccCCCCCCCCCCCCccccchhHHHHHhHhHhhhHHHHHHHHHH
Q 041227 587 EVDVLKQKVLELEKDCNELTEENLALLFKLKESGKDLLTGGASSHECPDNKSVFESESEVVQLKSQICKLEEELQERNAL 666 (1468)
Q Consensus 587 Eie~Lk~kvqeLE~dc~ELtdEnl~l~~klkEs~~~~~~~~~s~~~~~~~~~~~~~es~~~~l~~q~~~leee~~~~~~~ 666 (1468)
=.-.|..||.+|++++..-++.. +-|.|++.+-. ..| ..+.+.+-+..+......|++|..++.++..+
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~r-egl~Km~~vY~--------~nP--~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~ 84 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQR-EALKKMKDVYE--------KTP--QMGDPASLEPQIAETLSNIERLKLEVQKYEAW 84 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHH--------HCG--GGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------cCC--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999988884 44477776532 111 12222333777888888888888888888776
Q ss_pred HHhh
Q 041227 667 IERL 670 (1468)
Q Consensus 667 ~~~~ 670 (1468)
+.++
T Consensus 85 L~e~ 88 (98)
T 2ke4_A 85 LAEA 88 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 121
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=24.83 E-value=72 Score=29.69 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041227 1435 NSQFQRRIKCLEKEKEDCLSRAQAIEEELKQ 1465 (1468)
Q Consensus 1435 n~e~q~ki~~le~E~ee~~~r~q~lE~elk~ 1465 (1468)
|++++..|..|..|++++..+.+.+++++.+
T Consensus 1 ~~~L~k~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 1 GSMLTKDIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777766654
No 122
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.81 E-value=2.1e+02 Score=28.64 Aligned_cols=64 Identities=28% Similarity=0.330 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCc-hh-hhhhhhHHHHhhhHHHhHHHHHHHHhh
Q 041227 1027 HAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANP-KL-QATAEGLIEECSLLQKSNAELRKQKVN 1104 (1468)
Q Consensus 1027 ~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~-kL-QaT~e~lieec~slQ~~~~eLr~qkle 1104 (1468)
.+..||++|. ..|.|.+-.-|||++..+.. .-|| .+ +.|...=-.+-+.||.-.++|++|--+
T Consensus 23 ~ieeLq~Ei~----~~E~QL~~ArQKLkdA~~~~-----------e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd 87 (113)
T 4fi5_A 23 TMEELQREIN----AHEGQLVIARQKVRDAEKQY-----------EKDPDELNKRTLTDREGVAVSIQAKIDELKRQLAD 87 (113)
T ss_dssp CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh-----------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899998 66788899999999887665 2233 23 344554455677888888888887554
Q ss_pred h
Q 041227 1105 L 1105 (1468)
Q Consensus 1105 l 1105 (1468)
.
T Consensus 88 ~ 88 (113)
T 4fi5_A 88 R 88 (113)
T ss_dssp H
T ss_pred H
Confidence 3
No 123
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.62 E-value=2.4e+02 Score=26.68 Aligned_cols=64 Identities=27% Similarity=0.359 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCc-hh-hhhhhhHHHHhhhHHHhHHHHHHHHhh
Q 041227 1027 HAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANP-KL-QATAEGLIEECSLLQKSNAELRKQKVN 1104 (1468)
Q Consensus 1027 ~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~-kL-QaT~e~lieec~slQ~~~~eLr~qkle 1104 (1468)
-+..||+++. ..|.|.+-..|||.+..+.. ..+| .+ +.|...=-.+-+.||.-.++|++|--+
T Consensus 6 ~l~eLq~e~~----~~E~QL~~A~QKLkdA~~~~-----------e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 6 TLKEVQDNIT----LHEQRLVTTRQKLKDAERAV-----------ELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh-----------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888887 67888999999999887766 2344 33 344554455677888888888877654
Q ss_pred h
Q 041227 1105 L 1105 (1468)
Q Consensus 1105 l 1105 (1468)
.
T Consensus 71 ~ 71 (78)
T 2ic6_A 71 L 71 (78)
T ss_dssp H
T ss_pred H
Confidence 3
No 124
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=24.28 E-value=43 Score=32.33 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=31.7
Q ss_pred heeeEE-ec-cCCCccccceeeechhhhccccCccceeeccCCCCCCCe
Q 041227 68 LIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTS 114 (1468)
Q Consensus 68 IYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGTV 114 (1468)
..+|.| .- ..++..+||++.|+|++.... +..--+||....+|.+
T Consensus 99 ~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~--~~~~W~~L~~~~~g~~ 145 (149)
T 1a25_A 99 RLSVEIWDWDLTSRNDFMGSLSFGISELQKA--GVDGWFKLLSQEEGEY 145 (149)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEEHHHHTTC--CEEEEEECBCHHHHTT
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEHHHhCcC--ccCCeEEccCCCCCcc
Confidence 355555 22 335678999999999999865 5666788877666554
No 125
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.84 E-value=66 Score=31.39 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=37.0
Q ss_pred HHHhHhHhhhHHHHHHHHHHHHhhhhcccccchHHHHHHhhhhh
Q 041227 647 VQLKSQICKLEEELQERNALIERLSTYENRSDDLENQLQAFKDK 690 (1468)
Q Consensus 647 ~~l~~q~~~leee~~~~~~~~~~~~~~~~k~~dlel~~~~fk~~ 690 (1468)
.+|+..|.+|+.+....+-.+++.+.+.||-..|+..|.+|...
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888889999999899988888764
No 126
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.53 E-value=1.2e+02 Score=26.60 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041227 1435 NSQFQRRIKCLEKEKEDCLSRAQAIEEELKQT 1466 (1468)
Q Consensus 1435 n~e~q~ki~~le~E~ee~~~r~q~lE~elk~~ 1466 (1468)
..+++.+...|+.+|.++...+..|..++...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888888888888877776544
No 127
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.39 E-value=26 Score=28.69 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041227 1436 SQFQRRIKCLEKEKEDCLSRAQAIEEEL 1463 (1468)
Q Consensus 1436 ~e~q~ki~~le~E~ee~~~r~q~lE~el 1463 (1468)
..+++||+.|+.+++.+..|+..+..+|
T Consensus 7 ~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 7 EAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999887654
No 128
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=23.38 E-value=35 Score=32.01 Aligned_cols=27 Identities=37% Similarity=0.577 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 041227 586 KEVDVLKQKVLELEKDCNELTEENLAL 612 (1468)
Q Consensus 586 kEie~Lk~kvqeLE~dc~ELtdEnl~l 612 (1468)
.|+|+||.+|-||+...++|.-||==|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999644
No 129
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.23 E-value=62 Score=28.36 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=17.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhHHHHHhhh
Q 041227 981 EMEVHLHELEEENLQLSERICGLEAQLRYL 1010 (1468)
Q Consensus 981 elE~hls~Le~En~qLserisgLEaql~~l 1010 (1468)
+||..+..|+.+|.+|...|..|..++..|
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666555544
No 130
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=22.53 E-value=2.7e+02 Score=27.33 Aligned_cols=65 Identities=26% Similarity=0.342 Sum_probs=45.6
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCc-hh-hhhhhhHHHHhhhHHHhHHHHHHHHhh
Q 041227 1027 HAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANP-KL-QATAEGLIEECSLLQKSNAELRKQKVN 1104 (1468)
Q Consensus 1027 ~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~-kL-QaT~e~lieec~slQ~~~~eLr~qkle 1104 (1468)
-+..||++|. ..|.|.+-..|||.+..+.. ..+| .+ +.|..+=-.+-+.||.-.++|++|--+
T Consensus 6 ~i~eLq~e~~----~~E~QL~~A~QKLkdA~~~~-----------e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 6 TLKEVQDNIT----LHEQRLVTTRQKLKDAERAV-----------ELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (96)
T ss_dssp THHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh-----------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888887 67788999999999887766 2234 33 344555556677888888888887655
Q ss_pred hh
Q 041227 1105 LH 1106 (1468)
Q Consensus 1105 lh 1106 (1468)
.-
T Consensus 71 ~v 72 (96)
T 2ic9_A 71 LI 72 (96)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 131
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.16 E-value=3.6e+02 Score=25.73 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=45.0
Q ss_pred HHHHHHhhHHHhhhhHHHHHhhhhhhhhhhhHHHHHHHhhcCchh--HHHhhhhhhHHHhhHHHHHHhhhHHHHHHHHHH
Q 041227 1368 ELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLA--AIEALGSQEAALKNELAQIRRENSQFQRRIKCL 1445 (1468)
Q Consensus 1368 eLkaek~~~~~kis~~q~~~seled~k~sk~sleeKl~rle~dl~--a~ea~~~~~aelk~el~ri~r~n~e~q~ki~~l 1445 (1468)
.|-..=++|++||-.|+..=..|+ .|+-.+.+.-+ ....+...=++|+..+..+...|..+.-.|+.|
T Consensus 13 ~LNdRlAsyIdKVR~LEqqN~~Le----------~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 13 ELNDRFANLIDKVRFLEQQNKILL----------AELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566899999999888766554 22222221111 112223333455566666666677777777777
Q ss_pred HHHHHHHHHH
Q 041227 1446 EKEKEDCLSR 1455 (1468)
Q Consensus 1446 e~E~ee~~~r 1455 (1468)
..+.++++.|
T Consensus 83 ~~~~~~~k~K 92 (93)
T 3s4r_A 83 AEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777766654
No 132
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=21.87 E-value=61 Score=32.29 Aligned_cols=95 Identities=15% Similarity=0.131 Sum_probs=50.1
Q ss_pred ccccccCC----cc-c-eeEEEEEEcccCcccccccccccccCccccccccch-hcccccCcchhhhhhhheeeEE-ec-
Q 041227 5 IWELQVPK----GW-D-KLVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSE-SIWIPQDNALKEIEECLIKLVV-TM- 75 (1468)
Q Consensus 5 FhATQVP~----Gw-D-kLfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyE-Tvkl~qD~KTkk~~EKIYKfVV-Sm- 75 (1468)
++|..+|. |. | -.-|.+.|.+.++...+-+|. ...+ -||+|- +..|. .....+..+..+|-| .-
T Consensus 50 i~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v--~~~t---lnP~wnE~F~f~--v~~~~l~~~~L~~~V~d~d 122 (155)
T 2z0u_A 50 IQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRP--LDAS---DTLVFNEVFWVS--MSYPALHQKTLRVDVCTTD 122 (155)
T ss_dssp EEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCC--EECC---SSEEEEEEEEEE--CCHHHHHHCEEEEEEEEEC
T ss_pred EEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCc--CCCC---CCCccccEEEEE--cCHHHhCcCEEEEEEEECC
Confidence 45566652 33 2 244566665555432222233 3333 255553 22232 233445666777777 22
Q ss_pred cCCCccccceeeechhhhccccCccceeecc
Q 041227 76 GSSRSGIVGEALVNLASYMNSKTSVPLTLPL 106 (1468)
Q Consensus 76 GSSRSgiLGEasINLAdYaeAtkP~sVSLPL 106 (1468)
..++..+||++.|+|+++.....+.+-=.||
T Consensus 123 ~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L 153 (155)
T 2z0u_A 123 RSHLEECLGGAQISLAEVCRSGERSTRWYNL 153 (155)
T ss_dssp TTSCEEEEEEEEEECTTSCTTCCCEEEEEEE
T ss_pred CCCCCcEEEEEEEEHHHccCCCCccccceEc
Confidence 3467889999999999985433334333443
No 133
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=21.48 E-value=2.9e+02 Score=25.67 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=27.4
Q ss_pred HHhhhhhhhHHHHHHHHHHHhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHhhhHH
Q 041227 1218 EVSHLRADKAVLEAALQEVQGKLKLSESNLGTLRMESQTKIQQLKSELAAARQNQE 1273 (1468)
Q Consensus 1218 EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~l~~Es~~ki~~l~~~L~askqn~e 1273 (1468)
|+..|++-++.||..+.++..+... ++ ..+..+|..+-.+|+..|+..+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~---~~----~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAV---EA----ANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777554322 22 2233455555555555555433
No 134
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=21.44 E-value=6.4e+02 Score=25.46 Aligned_cols=43 Identities=21% Similarity=0.106 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhchHHHHHHHhhHHHhhhhH
Q 041227 1341 LKKLLNEAKFENERLEASFQILSGDYEELKAERISFMQKISTS 1383 (1468)
Q Consensus 1341 lk~sL~~~kfek~rLe~sl~~~S~e~eeLkaek~~~~~kis~~ 1383 (1468)
|+..+.+++.+.+++.....-+...+.+|+..+..|-.++-.+
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343433334433333333334444444444444333333
No 135
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.20 E-value=1.4e+02 Score=26.22 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041227 1434 ENSQFQRRIKCLEKEKEDCLSRAQAIEEELKQTK 1467 (1468)
Q Consensus 1434 ~n~e~q~ki~~le~E~ee~~~r~q~lE~elk~~k 1467 (1468)
...+++.++..|+.+|.+|..++..|..++...|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888888888888876554
No 136
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=21.09 E-value=1.3e+02 Score=25.31 Aligned_cols=31 Identities=32% Similarity=0.627 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041227 1438 FQRRIKCLEKEKEDCLSRAQAIEEELKQTKK 1468 (1468)
Q Consensus 1438 ~q~ki~~le~E~ee~~~r~q~lE~elk~~k~ 1468 (1468)
...||+.|..|++.-..|+..+|.+++..+|
T Consensus 8 IKKKMq~lK~ekd~A~drAe~~E~~~k~~~~ 38 (40)
T 2z5i_I 8 IKKKMQMLKLDKENALDRAEQLENEVARLKK 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 4689999999999999999999999988765
No 137
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.03 E-value=5.5e+02 Score=30.87 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHhH----------HhHHHHhHHHHHHHHHHHHHHhh
Q 041227 501 LQEAKKNLESTVQFLEKSLVEKSHEIEMERHLKTQTLMHYEAEWRSR----------IAEKEENIVNLEAKLSEVLCAQA 570 (1468)
Q Consensus 501 L~e~~knl~~~iq~Le~~l~ek~hei~~~~~~~~q~l~~~e~e~~~k----------ls~kE~eI~~L~~KL~~~~~~~~ 570 (1468)
|..-+.++...|+.|++.+.+...-..... +....+-..|..+ +.....+|.....-+.+.+....
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~----~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMY----QYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred hcccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhH
Q 041227 571 LKEKSFGNEDDHDLVKEVDVLKQKVLELEKDCNELTE 607 (1468)
Q Consensus 571 ~~~~~~~~~~d~~L~kEie~Lk~kvqeLE~dc~ELtd 607 (1468)
.... ..|..-++.|+.||+.|+.....+.+
T Consensus 167 ~~~i-------~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 167 PSSL-------RVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 138
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=20.96 E-value=3.6e+02 Score=28.97 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=35.8
Q ss_pred hhhheeeEE-ec-cCCCccccceeeec-hhhhccccCccceeeccCCCC-----CCCeEEEEeeeec
Q 041227 65 EECLIKLVV-TM-GSSRSGIVGEALVN-LASYMNSKTSVPLTLPLKKCN-----SGTSLQLKIQCLT 123 (1468)
Q Consensus 65 ~EKIYKfVV-Sm-GSSRSgiLGEasIN-LAdYaeAtkP~sVSLPLK~cn-----sGTVLHVtIQ~Lt 123 (1468)
..+..+|.| .- ..++..++|++.|+ +.+..+...+...-+||.... .| -|+|.+....
T Consensus 84 ~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G-~i~vsl~y~~ 149 (296)
T 1dqv_A 84 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLG-ELNFSLCYLP 149 (296)
T ss_dssp SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCC-EEEEEEEEET
T ss_pred cCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccc-eEEEEEEecc
Confidence 345566766 22 44678899999995 777766555566667774332 23 4566655543
No 139
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.89 E-value=3.2e+02 Score=26.74 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhHHhhhHHHHHHHHHHHhh
Q 041227 294 IEELHAEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLA 357 (1468)
Q Consensus 294 IEeLK~E~~~LeR~Adkl~~ELQtLRKQlakEsKrgqdLs~EvS~Lk~ERD~LK~E~EqLKss~ 357 (1468)
.+.||.++..++..-.....++..|...+..+-.+..... .++..+-.|+|.|..++
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE-------~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAE-------EEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3455555555555555566788888888888877766544 45567778888888776
No 140
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=20.39 E-value=3.7e+02 Score=28.36 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=37.4
Q ss_pred hhhhheeeEE-ec-cCCCccccceeeechhhhccccCccceeeccCCCC-----CCCeEEEEeeee
Q 041227 64 IEECLIKLVV-TM-GSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCN-----SGTSLQLKIQCL 122 (1468)
Q Consensus 64 ~~EKIYKfVV-Sm-GSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cn-----sGTVLHVtIQ~L 122 (1468)
+.....+|.| .- ..++..+||++.|+|++.... .+...-+||.... ...-+|+.+...
T Consensus 82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~ 146 (284)
T 2r83_A 82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG-HVTEEWRDLQSAEKEEQEKLGDICFSLRYV 146 (284)
T ss_dssp CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCS-SCEEEEEECBCCSSCCCCCCCEEEEEEEEE
T ss_pred hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccC-CcceeEEEeeccccccccccccEEEEEEec
Confidence 3445666766 22 345688999999999998653 4566667885432 223467776654
No 141
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=20.25 E-value=68 Score=30.09 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=54.2
Q ss_pred ccccccCC----cc-ce-eEEEEEEcccCcccccccccccccCccccccccchhcccccCcchhhhhhhheeeEE-ec-c
Q 041227 5 IWELQVPK----GW-DK-LVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLIKLVV-TM-G 76 (1468)
Q Consensus 5 FhATQVP~----Gw-Dk-LfVSiVp~DtGKtTAKteKA~VRnG~CrWedPIyETvkl~qD~KTkk~~EKIYKfVV-Sm-G 76 (1468)
+.|..+|. |. |- ..|++.|...|....|| +..-++-+..|...+ .|.-. .... ++..+|-| .- .
T Consensus 23 ~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT-~~~~~t~nP~wne~f----~f~~~--~~~~-~~~l~i~v~d~d~ 94 (137)
T 3rdl_A 23 RDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKT-KTIRSTLNPQWNESF----TFKLK--PSDK-DRRLSVEIWDWDR 94 (137)
T ss_dssp EEEESCCCCSTTSCCCEEEEEEEECCTTCCCCEEC-CCCCSCSSCEEEEEE----EEECC--GGGG-GCEEEEEEEECCS
T ss_pred EEeeCCCCCCCCCCCCeeEEEEEEcCCCCCeeecC-ceEcCCCCCCcccEE----EEEcC--chhc-CCEEEEEEEECCC
Confidence 45666663 22 33 23444444434444443 333334455565433 33211 1112 23455555 22 3
Q ss_pred CCCccccceeeechhhhccccCccceeeccCCCCCCCeEEE
Q 041227 77 SSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTSLQL 117 (1468)
Q Consensus 77 SSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGTVLHV 117 (1468)
.++..+||++.|+|++.... +..--+||.....|-.-||
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~--~~~~W~~L~~~~~g~~~~~ 133 (137)
T 3rdl_A 95 TTRNDFMGSLSFGVSELMKM--PASGWYKLLNQEEGEYYNV 133 (137)
T ss_dssp SSCCEEEEEEEEEHHHHHHS--CEEEEEECBCHHHHTTCCC
T ss_pred CCCCceEEEEEEeHHHhccC--ccCceEECcCccccccccC
Confidence 34678999999999999764 3667777776655554443
Done!