BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041228
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/383 (21%), Positives = 146/383 (38%), Gaps = 60/383 (15%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDP 250
+Y + TP ++D G W+ C +QN SS+++ + C
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLWVDC-------DQN------YVSSTYRPVRCRTS 67
Query: 251 RCHLVSSP------DPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSE 304
+C L S + PRP N TC F + TG E V++ + G S
Sbjct: 68 QCSLSGSIACGDCFNGPRP-GCNNNTCGVFPENPVINTATGGEVAEDV-VSVESTDGSSS 125
Query: 305 FR--QVENVMFGCGHWNXXXXXXXXXXXXXXXXXXXXX--SQLQSLYG--HSFSYCLVDR 358
R V +F C + SQ S + F+ CL
Sbjct: 126 GRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL--- 182
Query: 359 NSDTNVSSKLIFGED------KDLLNHPNLNFTSLVSGKENPVDTF-----------YYL 401
+ T+ +S +IFG D +++ L +T L++ NPV T Y++
Sbjct: 183 SGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLT---NPVSTSATSTQGEPSVEYFI 239
Query: 402 QIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKK--VKG 459
+KSI + +++++ +S G GGT I + + Y+ + +AF+K+ +
Sbjct: 240 GVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARN 299
Query: 460 YPLVKDFPILDPCYNVSGIEKMEL----PEFGIQF-ADGGVWNFPVENYFIRLDPEDVVC 514
V C++ I L P + ++ VW N + ++ ++VVC
Sbjct: 300 ITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIN-DNVVC 358
Query: 515 LAIL--GTPRSALSIIGNYQQQN 535
L ++ G+ +IG +Q ++
Sbjct: 359 LGVVDGGSNLRTSIVIGGHQLED 381
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/382 (20%), Positives = 146/382 (38%), Gaps = 58/382 (15%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDP 250
+Y + TP ++D G W+ C +QN SS+++ + C
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLWVDC-------DQN------YVSSTYRPVRCRTS 67
Query: 251 RCHLVSSP------DPPRPCQAENQTCPYFYWY-GDSSNTTGDFALETFTVNLSTPTGKS 303
+C L S + PRP N TC F ++ T G+ A + +V + +
Sbjct: 68 QCSLSGSIACGDCFNGPRP-GCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSG 126
Query: 304 EFRQVENVMFGCGHWNXXXXXXXXXXXXXXXXXXXXX--SQLQSLYG--HSFSYCLVDRN 359
V +F C + SQ S + F+ CL +
Sbjct: 127 RVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL---S 183
Query: 360 SDTNVSSKLIFGED------KDLLNHPNLNFTSLVSGKENPVDTF-----------YYLQ 402
T+ +S +IFG D +++ L +T L++ NPV T Y++
Sbjct: 184 GSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLT---NPVSTSATSTQGEPSVEYFIG 240
Query: 403 IKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKK--VKGY 460
+KSI + +++++ +S G GGT I + + Y+ + +AF+K+ +
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNI 300
Query: 461 PLVKDFPILDPCYNVSGIEKMEL----PEFGIQF-ADGGVWNFPVENYFIRLDPEDVVCL 515
V C++ I L P + ++ VW N + ++ ++VVCL
Sbjct: 301 TRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIN-DNVVCL 359
Query: 516 AIL--GTPRSALSIIGNYQQQN 535
++ G+ +IG +Q ++
Sbjct: 360 GVVDGGSNLRTSIVIGGHQLED 381
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNI 245
+YF +++GTPP+ + + DTGS W+ + C +N +DP+ SS+F+N+
Sbjct: 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNL 66
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNI 245
+YF +++GTPP+ + + DTGS W+ + C +N +DP+ SS+F+N+
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNI 245
+YF +++GTPP+ + + DTGS W+ + C +N +DP+ SS+F+N+
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDP 250
EY+ V +GTP K + DTGS WI C +C + YDP SS+++ D
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQ-TKYDPNQSSTYQ----ADG 70
Query: 251 RCHLVSSPD 259
R +S D
Sbjct: 71 RTWSISYGD 79
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNIS 246
EYF + +GTP + + + DTGS W+ V C N ++P+DSS++++ S
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQSTS 68
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNIS 246
EYF + +GTP + + + DTGS W+ V C N ++P+DSS++++ S
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQSTS 68
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDP 250
EY+ V +GTP K + DTGS WI C +C YDP SS+++ D
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQ-TKYDPNQSSTYQ----ADG 70
Query: 251 RCHLVSSPD 259
R +S D
Sbjct: 71 RTWSISYGD 79
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNIS 246
EYF + +GTP + + I DTGS W+ V C + ++P DSS+F+ S
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS 112
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 427 AGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEF 486
+GGT+I + T + YQ Q F +++ VK C+N + I +
Sbjct: 259 SGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINAYPSVDL 318
Query: 487 GIQFADGGVWNFPVENYFIRLDPEDVVCLAILG---TPRSALSIIGNYQQQNFHI 538
+ +G VW E+ ++ P V CL ++ PR+ +++ ++N +
Sbjct: 319 VMDKPNGPVWRISGEDLMVQAQP-GVTCLGVMNGGMQPRAEITLGARQLEENLVV 372
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNIS 246
EYF + +GTP + + I DTGS W+ V C + ++P DSS+F+ S
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS 68
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPC--YDCFEQNGPHYDPKDSSSFK 243
+Y+ D+ +GTPP+++ ILDTGS W+ C CF + YD + SSS+K
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHS--KYDHEASSSYK 66
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNIS 246
EYF + +GTP + + I DTGS W+ V C + ++P DSS+F+ S
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS 68
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNIS 246
EYF + +GTP + + I DTGS W+ V C + ++P DSS+F+ S
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS 68
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFK 243
EYF + +GTP + + I DTGS W+ V C + ++P DSS+F+
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE 109
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPC--YDCFEQNGPHYDPKDSSSFK 243
+Y+ D+ +GTPP+++ ILDTGS W+ C CF + YD + SSS+K
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHS--KYDHEASSSYK 66
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPC--YDCFEQNGPHYDPKDSSSFK 243
+Y+ D+ +GTPP+++ ILDTGS W+ C CF + YD + SSS+K
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHS--KYDHEASSSYK 66
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFK 243
EYF + +GTP + + I DTGS W+ V C + ++P DSS+F+
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE 65
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFK 243
EYF + +GTP + + I DTGS W+ V C + ++P DSS+F+
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE 65
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 192 YFMDVFVGTPPKHYYFILDTGSDLNWI---QCVPCYDCFEQNGPHYDPKDSSSFK 243
YF ++ +GTPP+ + I DTGS + W+ +C+ C + Y+ DSS++K
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHS--MYESSDSSTYK 67
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY---DCFEQNGPHYDPKDSSSFKN 244
+YF ++ VGTPP+ + I DTGS W+ CY C+ + Y SS++K
Sbjct: 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHS--RYKAGASSTYKK 107
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPH--YDPKDSSSFKN 244
+Y+ ++ +GTPP+ + + DTGS W+ C + H +D DSSS+K+
Sbjct: 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 117
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPH--YDPKDSSSFKN 244
+Y+ ++ +GTPP+ + + DTGS W+ C + H +D DSSS+K+
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 74
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPH--YDPKDSSSFKN 244
+Y+ ++ +GTPP+ + + DTGS W+ C + H +D DSSS+K+
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 74
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPH--YDPKDSSSFKN 244
+Y+ ++ +GTPP+ + + DTGS W+ C + H +D DSSS+K+
Sbjct: 16 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 71
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPH--YDPKDSSSFKN 244
+Y+ ++ +GTPP+ + + DTGS W+ C + H +D DSSS+K+
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 74
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPH--YDPKDSSSFKN 244
+Y+ ++ +GTPP+ + + DTGS W+ C + H +D DSSS+K+
Sbjct: 12 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 67
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPH--YDPKDSSSFKN 244
+Y+ ++ +GTPP+ + + DTGS W+ C + H +D DSSS+K+
Sbjct: 15 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 70
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 192 YFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFK 243
YF ++ +GTPP+++ + DTGS W+ V C + ++P +SS++
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYS 65
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPH--YDPKDSSSFKN 244
+Y+ ++ +GTPP+ + + DTGS W+ C + H +D DSSS+K+
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 74
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFK 243
EYF + +G+PP+++ I DTGS W+ V C + + P SS++
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYS 76
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSF 242
EY+ + +GTPP+ + I DTGS W+ C N + P+ SS++
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTY 64
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNG----PHYDPKDSSSFK 243
EY + V +GTP + +Y + DTGS W VP C G +DP SS+FK
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDTW---VPHKGCDNSEGCVGKRFFDPSSSSTFK 72
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 106/278 (38%), Gaps = 54/278 (19%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWI-----QCVPCYDCFEQNGPHYDPKDSSSFKNI 245
Y V VG+ + I+DTGS W+ QC DC ++ + P SSS+KN+
Sbjct: 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNL 70
Query: 246 SCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGK--S 303
+ YGD S + G + +T T+N + TG+ +
Sbjct: 71 GA------------------------AFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIA 106
Query: 304 EFRQ--VENVMFGCGHWNXXXXXXXXXXXXXXXXXXXXXSQLQSLYGHSFSYCLVDRNSD 361
+ Q V+ + G G+ + + + + +Y L NS
Sbjct: 107 DVTQTSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLY-LNSP 165
Query: 362 TNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWR 421
+ + +IFG N ++ + ++ + + S+ + G S D
Sbjct: 166 SAETGTIIFG------GVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGD---- 215
Query: 422 LSPEGAGGTIIDSGTTLSYF-AEPAYQIIKQAFMKKVK 458
G ++DSGTTL+YF ++ A Q+ +A + V+
Sbjct: 216 -------GALLDSGTTLTYFPSDFAAQLADKAGARLVQ 246
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNG----PHYDPKDSSSFK 243
EY + V +GTP + + + DTGS W VP C + G +DP SS+FK
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTW---VPHKGCTKSEGCVGSRFFDPSASSTFK 72
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPH 233
+Y+ ++ +GTPP+ + I DTGS W+ C + G H
Sbjct: 16 QYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIH 58
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY 224
+Y ++V VG+P Y ++DTGS W+ Y
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSY 46
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 190 GEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPC 223
+Y+ ++ +GTPP+ + + DTGS W+ + C
Sbjct: 13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHC 46
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 29/108 (26%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDP 250
Y D+ +G+ + + I+DTGS W+ D+S ++C P
Sbjct: 13 SYAADITIGSNKQKFNVIVDTGSSDLWV------------------PDAS----VTCDKP 50
Query: 251 R-------CHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALET 291
R C P ++N P++ YGD S++ G +T
Sbjct: 51 RPGQSADFCKGKGIYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDT 98
>pdb|1LFW|A Chain A, Crystal Structure Of Pepv
Length = 470
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 22/98 (22%)
Query: 201 PPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDP 260
P K F+L T + NW+ G Y K H+P +V SPD
Sbjct: 141 PKKKIDFVLGTNEETNWV------------GIDYYLK----------HEPTPDIVFSPDA 178
Query: 261 PRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLST 298
P Q + + +T GD+ L+ F ++T
Sbjct: 179 EYPIINGEQGIFTLEFSFKNDDTKGDYVLDKFKAGIAT 216
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 165 SPESYASGV---SGQLVATLESGVSLGAG---EYFMDVFVGTPP----KHYYFILDTGSD 214
SPE+ A + S +LV T + GV GA + +D + P +H + TGSD
Sbjct: 167 SPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD 226
Query: 215 LNWIQCVPCY--DCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCP 272
++W + + D E+ P + P + ++ DP L +S +P + T
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQP------EAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 273 YF 274
Y
Sbjct: 281 YL 282
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 192 YFMDVFVGTPPKHYYFILDTGS 213
Y++++ +GTPP+ ++DTGS
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGS 36
>pdb|4HBQ|A Chain A, Crystal Structure Of A Loop Deleted Mutant Of Human
Madcam-1 D1d2
pdb|4HBQ|B Chain B, Crystal Structure Of A Loop Deleted Mutant Of Human
Madcam-1 D1d2
pdb|4HC1|A Chain A, Crystal Structure Of A Loop Deleted Mutant Of Human
Madcam-1 D1d2 Complexed With Fab 10g3
pdb|4HC1|B Chain B, Crystal Structure Of A Loop Deleted Mutant Of Human
Madcam-1 D1d2 Complexed With Fab 10g3
Length = 206
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 380 PN-LNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEG 426
PN L+F+ LV G+E +++ +GG+VL E WRL P G
Sbjct: 122 PNALSFSLLVGGQELEGAQALGPEVQQEPIGGDVLFRVTERWRLPPLG 169
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 192 YFMDVFVGTPPKHYYFILDTGSDLNWI-----QCVPCY----DCFEQNGPHYDPKDSSSF 242
Y D+ VG+ + ++DTGS W+ +C Y + F + +DP SSS
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 243 KNI 245
+N+
Sbjct: 74 QNL 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,340,809
Number of Sequences: 62578
Number of extensions: 646453
Number of successful extensions: 1234
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1182
Number of HSP's gapped (non-prelim): 62
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)