Query 041228
Match_columns 538
No_of_seqs 251 out of 1398
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 9E-68 2E-72 568.3 38.0 382 94-538 25-412 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.3E-55 2.8E-60 470.0 33.0 329 186-538 41-377 (398)
3 cd05489 xylanase_inhibitor_I_l 100.0 1.6E-53 3.4E-58 448.6 30.6 318 198-538 2-347 (362)
4 cd05472 cnd41_like Chloroplast 100.0 4.8E-51 1E-55 418.0 29.9 281 191-538 1-283 (299)
5 cd05478 pepsin_A Pepsin A, asp 100.0 8.6E-49 1.9E-53 404.9 30.1 287 186-538 5-304 (317)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 3.3E-48 7.2E-53 401.7 31.6 290 188-538 3-312 (325)
7 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.6E-48 5.7E-53 403.1 27.6 287 190-538 2-309 (326)
8 cd05486 Cathespin_E Cathepsin 100.0 9.4E-48 2E-52 397.0 28.4 285 192-538 1-303 (316)
9 cd05477 gastricsin Gastricsins 100.0 3E-47 6.4E-52 393.4 30.8 285 190-538 2-304 (318)
10 cd05488 Proteinase_A_fungi Fun 100.0 1E-46 2.2E-51 390.1 29.6 286 186-538 5-307 (320)
11 cd05485 Cathepsin_D_like Cathe 100.0 2.5E-46 5.4E-51 388.9 31.1 289 186-538 6-316 (329)
12 cd06098 phytepsin Phytepsin, a 100.0 2.8E-46 6E-51 386.5 30.2 279 186-538 5-304 (317)
13 PTZ00165 aspartyl protease; Pr 100.0 3.2E-46 6.9E-51 405.0 30.7 294 178-538 110-432 (482)
14 cd05487 renin_like Renin stimu 100.0 8.5E-46 1.8E-50 384.2 30.4 289 187-538 4-312 (326)
15 cd05473 beta_secretase_like Be 100.0 1.4E-45 3.1E-50 388.2 28.1 302 190-538 2-331 (364)
16 PTZ00147 plasmepsin-1; Provisi 100.0 5.1E-45 1.1E-49 392.9 32.5 289 179-538 130-435 (453)
17 cd05475 nucellin_like Nucellin 100.0 5.6E-45 1.2E-49 369.2 26.1 244 190-538 1-257 (273)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 8.9E-44 1.9E-48 382.7 32.6 285 186-538 133-434 (450)
19 cd05476 pepsin_A_like_plant Ch 100.0 6.8E-44 1.5E-48 359.5 25.4 248 191-538 1-249 (265)
20 cd06097 Aspergillopepsin_like 100.0 1.1E-41 2.3E-46 345.7 25.8 252 192-538 1-265 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 4.5E-41 9.7E-46 342.5 26.6 262 191-538 2-281 (295)
22 cd05471 pepsin_like Pepsin-lik 100.0 3.4E-39 7.3E-44 324.5 27.2 257 192-538 1-270 (283)
23 PF00026 Asp: Eukaryotic aspar 100.0 7.4E-40 1.6E-44 335.3 22.3 284 191-538 1-303 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 4.6E-33 1E-37 262.2 16.3 164 192-372 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.3E-24 2.7E-29 203.9 11.2 139 398-538 1-148 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1.1E-22 2.4E-27 177.4 12.9 105 194-332 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.6 0.00022 4.8E-09 59.8 7.9 93 190-333 1-93 (96)
28 PF13650 Asp_protease_2: Aspar 94.2 0.64 1.4E-05 38.1 10.3 89 194-333 1-89 (90)
29 TIGR02281 clan_AA_DTGA clan AA 93.9 0.38 8.2E-06 43.1 8.9 95 188-333 8-102 (121)
30 cd05479 RP_DDI RP_DDI; retrope 87.5 4.5 9.8E-05 36.1 9.2 32 188-221 13-44 (124)
31 cd05484 retropepsin_like_LTR_2 86.3 0.7 1.5E-05 38.8 3.1 29 192-222 1-29 (91)
32 PF13975 gag-asp_proteas: gag- 77.6 3.2 6.9E-05 33.5 3.8 34 188-223 5-38 (72)
33 PF00077 RVP: Retroviral aspar 76.0 3.1 6.8E-05 35.1 3.5 28 193-222 7-34 (100)
34 PF13650 Asp_protease_2: Aspar 68.2 5.5 0.00012 32.4 3.1 21 429-449 11-31 (90)
35 TIGR02281 clan_AA_DTGA clan AA 68.2 11 0.00024 33.6 5.3 36 396-449 9-44 (121)
36 cd05484 retropepsin_like_LTR_2 60.4 11 0.00023 31.5 3.5 30 405-449 4-33 (91)
37 cd05483 retropepsin_like_bacte 58.1 16 0.00035 29.9 4.2 21 429-449 15-35 (96)
38 PF13975 gag-asp_proteas: gag- 56.9 20 0.00044 28.7 4.5 29 406-449 13-41 (72)
39 cd05482 HIV_retropepsin_like R 52.4 16 0.00034 31.0 3.2 25 195-221 2-26 (87)
40 cd06095 RP_RTVL_H_like Retrope 42.8 25 0.00054 29.1 3.0 26 195-222 2-27 (86)
41 cd06095 RP_RTVL_H_like Retrope 41.5 28 0.0006 28.9 3.0 21 429-449 11-31 (86)
42 PF00077 RVP: Retroviral aspar 40.9 22 0.00047 29.9 2.4 27 405-446 9-35 (100)
43 cd05479 RP_DDI RP_DDI; retrope 37.2 36 0.00079 30.3 3.3 21 429-449 29-49 (124)
44 PF12384 Peptidase_A2B: Ty3 tr 36.8 37 0.0008 32.3 3.3 29 193-221 34-62 (177)
45 cd05481 retropepsin_like_LTR_1 32.3 43 0.00094 28.4 2.8 22 428-449 11-32 (93)
46 PF11925 DUF3443: Protein of u 31.8 2E+02 0.0043 30.9 8.1 124 169-333 1-147 (370)
47 PF13956 Ibs_toxin: Toxin Ibs, 30.9 29 0.00063 20.8 1.0 13 3-15 2-14 (19)
48 COG3577 Predicted aspartyl pro 28.2 1.4E+02 0.0031 29.4 5.9 71 187-295 101-171 (215)
49 PF14851 FAM176: FAM176 family 22.8 2E+02 0.0044 27.0 5.7 15 116-130 119-133 (153)
50 COG5550 Predicted aspartyl pro 21.6 54 0.0012 29.7 1.5 21 429-449 28-49 (125)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=9e-68 Score=568.25 Aligned_cols=382 Identities=36% Similarity=0.660 Sum_probs=306.1
Q ss_pred ceeEEEeccCCCCCCCC----CCCChhHHHHhHHHHHHHHHHHHhhhccccchhhhhhhhcccccccCCccCCCCCCCCc
Q 041228 94 QKVKLHLKHRSKNRETE----PKKSVSESTIRDLTRIQALHRRIIEKKNQNTVSRLKKESQKSKKQIKPVVTPAASPESY 169 (538)
Q Consensus 94 ~~~~l~~~~~~~~~~~~----~~~~~~~~l~rD~~R~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (538)
-+++|.|+|.+|+|... ..+.+.++++||.+|+++|.+|.. . .
T Consensus 25 ~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----~-----------------------~----- 71 (431)
T PLN03146 25 FTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDA-----S-----------------------P----- 71 (431)
T ss_pred eEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccc-----c-----------------------C-----
Confidence 34455555557887321 225578889999999888754320 0 0
Q ss_pred cCCcccceeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCC
Q 041228 170 ASGVSGQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHD 249 (538)
Q Consensus 170 ~~~~~~~~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s 249 (538)
.|+.++...+.++|+++|.||||+|++.|+|||||+++||||.+|..|+.|.++.|||++|+||+.++|++
T Consensus 72 ---------~~~~~~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s 142 (431)
T PLN03146 72 ---------NDPQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDS 142 (431)
T ss_pred ---------CccccCcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCC
Confidence 12222334578899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCcc-Ccce
Q 041228 250 PRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFH-GAAG 328 (538)
Q Consensus 250 ~~C~~~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~-~~dG 328 (538)
+.|+.+.. ...|..+ +.|.|.+.|+||+.+.|++++|+|+|+... + ....++++.|||++.+.|.|. ..+|
T Consensus 143 ~~C~~~~~---~~~c~~~-~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~--~--~~~~v~~~~FGc~~~~~g~f~~~~~G 214 (431)
T PLN03146 143 SQCQALGN---QASCSDE-NTCTYSYSYGDGSFTKGNLAVETLTIGSTS--G--RPVSFPGIVFGCGHNNGGTFDEKGSG 214 (431)
T ss_pred cccccCCC---CCCCCCC-CCCeeEEEeCCCCceeeEEEEEEEEeccCC--C--CcceeCCEEEeCCCCCCCCccCCCce
Confidence 99987643 2347543 469999999999988999999999997421 1 124688999999999988775 5799
Q ss_pred eecccCCCCChhhHHhhhccCceEEEecCCCCCCCCCcceEecCCCCCCCC-CCceeEeeccCCCCCccceEEEEEeeEE
Q 041228 329 LLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNH-PNLNFTSLVSGKENPVDTFYYLQIKSII 407 (538)
Q Consensus 329 ILGLg~~~lSl~sQl~~~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~-g~l~~tPl~~~~~~~~~~~y~V~L~gIs 407 (538)
|||||++++|+++|+...++++|||||++..++....|.|+||+. .++. ..+.||||+.+. .+.||+|.|++|+
T Consensus 215 ilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~---~~~~y~V~L~gIs 289 (431)
T PLN03146 215 IVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKD---PDTFYYLTLEAIS 289 (431)
T ss_pred eEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCC---CCCeEEEeEEEEE
Confidence 999999999999999877778999999865443334699999985 2333 458999998542 2579999999999
Q ss_pred eCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEE
Q 041228 408 VGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFG 487 (538)
Q Consensus 408 VgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~ 487 (538)
|||+.+++++..|. ..+.+++||||||++|+||+++|++|+++|.++++..+.......+++||+... ...+|+|+
T Consensus 290 Vgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~ 365 (431)
T PLN03146 290 VGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIIT 365 (431)
T ss_pred ECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEE
Confidence 99999999887764 234568999999999999999999999999999976444344445689998643 25689999
Q ss_pred EEEecCeEEEeCCCccEEEecCCCcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 488 IQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 488 f~F~gg~~~~lp~~~yl~~~~~~~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
|+| +|+++.|++++|+++.. .+.+|++|+.. .+.|||||+|||+++|
T Consensus 366 ~~F-~Ga~~~l~~~~~~~~~~-~~~~Cl~~~~~--~~~~IlG~~~q~~~~v 412 (431)
T PLN03146 366 AHF-TGADVKLQPLNTFVKVS-EDLVCFAMIPT--SSIAIFGNLAQMNFLV 412 (431)
T ss_pred EEE-CCCeeecCcceeEEEcC-CCcEEEEEecC--CCceEECeeeEeeEEE
Confidence 999 58999999999999876 56789999865 3469999999999986
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-55 Score=470.04 Aligned_cols=329 Identities=38% Similarity=0.730 Sum_probs=273.0
Q ss_pred ccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC-CCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCC
Q 041228 186 SLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY-DCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPC 264 (538)
Q Consensus 186 ~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~-~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C 264 (538)
....++|+++|.||||+|.|.|+|||||+++||+|.+|. .|+.+.++.|||++|+||++++|.++.|...... |
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-----~ 115 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-----C 115 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-----c
Confidence 356679999999999999999999999999999999999 8998777779999999999999999999987532 4
Q ss_pred CCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecccCCCCChhh
Q 041228 265 QAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLGRGPLSFSS 341 (538)
Q Consensus 265 ~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg~~~lSl~s 341 (538)
.. +..|.|.+.||||+.+.|++++|+|+|+.++ ...++++.|||++.+.|. . ...+||||||++.+|+++
T Consensus 116 ~~-~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~------~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~ 188 (398)
T KOG1339|consen 116 SP-NSSCPYSIQYGDGSSTSGYLATDTVTFGGTT------SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPS 188 (398)
T ss_pred cc-CCcCceEEEeCCCCceeEEEEEEEEEEcccc------ccccccEEEEeeecCccccccccccceEeecCCCCcccee
Confidence 43 3579999999998889999999999998421 145677999999999764 2 357999999999999999
Q ss_pred HHhhhccC--ceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCCcc
Q 041228 342 QLQSLYGH--SFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDET 419 (538)
Q Consensus 342 Ql~~~~~~--~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~~~ 419 (538)
|+...+.. +|||||..........|.|+||+.+..++.+.+.||||+.+. ..||.|.|.+|.|||+. .+++..
T Consensus 189 q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~----~~~y~v~l~~I~vgg~~-~~~~~~ 263 (398)
T KOG1339|consen 189 QLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNP----STYYQVNLDGISVGGKR-PIGSSL 263 (398)
T ss_pred ecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCC----CccEEEEEeEEEECCcc-CCCcce
Confidence 99765544 699999876543334799999999999999999999999642 16999999999999988 777777
Q ss_pred cccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEEEeC
Q 041228 420 WRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFP 499 (538)
Q Consensus 420 f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~~lp 499 (538)
|..+ .+++||||||++++||+++|++|+++|.+.+.. .......+++|+...... ..+|.|.|+|.+|+.|.|+
T Consensus 264 ~~~~---~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~ 337 (398)
T KOG1339|consen 264 FCTD---GGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLP 337 (398)
T ss_pred EecC---CCCEEEECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeC
Confidence 7532 579999999999999999999999999887511 111222346999988543 4599999999669999999
Q ss_pred CCccEEEecCCCcE-EEEEEecCCC-CceEecHhhhceeeC
Q 041228 500 VENYFIRLDPEDVV-CLAILGTPRS-ALSIIGNYQQQNFHI 538 (538)
Q Consensus 500 ~~~yl~~~~~~~~~-Claf~~~~~~-~~~IiGn~~qq~~~V 538 (538)
+++|+++.+. +.. |++++..... ..||||++|||+++|
T Consensus 338 ~~~y~~~~~~-~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~ 377 (398)
T KOG1339|consen 338 PKNYLVEVSD-GGGVCLAFFNGMDSGPLWILGDVFQQNYLV 377 (398)
T ss_pred ccceEEEECC-CCCceeeEEecCCCCceEEEchHHhCCEEE
Confidence 9999999873 333 9997776433 589999999999875
No 3
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.6e-53 Score=448.57 Aligned_cols=318 Identities=25% Similarity=0.432 Sum_probs=254.6
Q ss_pred eCCCCce-eeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCC--------CCCCCCC
Q 041228 198 VGTPPKH-YYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPP--------RPCQAEN 268 (538)
Q Consensus 198 IGTP~q~-~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~--------~~C~~~~ 268 (538)
+|||-.. +.|+|||||+++||||.+| +|+||..++|+++.|+.+....+. ..|..
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~--------------~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-- 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG--------------HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-- 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC--------------CcCCCCccCcCChhhccccccCCCccccCCCCCCCCC--
Confidence 5788787 9999999999999999864 688999999999999876533222 25633
Q ss_pred CceeeEEE-eCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEecc--CCccCcceeecccCCCCChhhHHhh
Q 041228 269 QTCPYFYW-YGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNR--GLFHGAAGLLGLGRGPLSFSSQLQS 345 (538)
Q Consensus 269 ~~c~y~v~-YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~--g~f~~~dGILGLg~~~lSl~sQl~~ 345 (538)
+.|.|.+. |++|+.+.|++++|+|+|+.+...... ...++++.|||++++. +.+.+++||||||++++|+++|+..
T Consensus 66 ~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~-~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~ 144 (362)
T cd05489 66 NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPL-LVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLAS 144 (362)
T ss_pred CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcc-cceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhh
Confidence 46999765 889988999999999999742110000 1368899999998864 4555789999999999999999965
Q ss_pred hc--cCceEEEecCCCCCCCCCcceEecCCCCCCCC------CCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCC
Q 041228 346 LY--GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNH------PNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPD 417 (538)
Q Consensus 346 ~~--~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~------g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~ 417 (538)
.. .++|||||++.. ...|.|+||+.+..++. +.+.||||+.++. ...||+|+|++|+||++.+.+++
T Consensus 145 ~~~~~~~FS~CL~~~~---~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~--~~~~Y~v~l~~IsVg~~~l~~~~ 219 (362)
T cd05489 145 AFGVARKFALCLPSSP---GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPR--KSGEYYIGVTSIAVNGHAVPLNP 219 (362)
T ss_pred hcCCCcceEEEeCCCC---CCCeeEEECCCchhcccccccccCCccccccccCCC--CCCceEEEEEEEEECCEECCCCc
Confidence 43 479999998642 23699999998876553 6799999997542 34799999999999999999988
Q ss_pred cccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCC-CceecccCCCCCc----ccccceEEEEEec
Q 041228 418 ETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDF-PILDPCYNVSGIE----KMELPEFGIQFAD 492 (538)
Q Consensus 418 ~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~-~~ld~C~~~s~~~----~~~lP~I~f~F~g 492 (538)
..|.+...+.+++||||||++|+||+++|++|+++|.+++..++..... ..++.||+..... ...+|+|+|+|+|
T Consensus 220 ~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g 299 (362)
T cd05489 220 TLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDG 299 (362)
T ss_pred hhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeC
Confidence 8777666667899999999999999999999999999998765433321 2237999865431 3579999999976
Q ss_pred -CeEEEeCCCccEEEecCCCcEEEEEEecCC--CCceEecHhhhceeeC
Q 041228 493 -GGVWNFPVENYFIRLDPEDVVCLAILGTPR--SALSIIGNYQQQNFHI 538 (538)
Q Consensus 493 -g~~~~lp~~~yl~~~~~~~~~Claf~~~~~--~~~~IiGn~~qq~~~V 538 (538)
|++|+|+++||+++.. .+.+|++|+..+. ...||||++|||+++|
T Consensus 300 ~g~~~~l~~~ny~~~~~-~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~v 347 (362)
T cd05489 300 GGVNWTIFGANSMVQVK-GGVACLAFVDGGSEPRPAVVIGGHQMEDNLL 347 (362)
T ss_pred CCeEEEEcCCceEEEcC-CCcEEEEEeeCCCCCCceEEEeeheecceEE
Confidence 7999999999999876 5678999987642 4589999999999986
No 4
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.8e-51 Score=418.02 Aligned_cols=281 Identities=46% Similarity=0.814 Sum_probs=236.4
Q ss_pred eEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCCc
Q 041228 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQT 270 (538)
Q Consensus 191 ~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~~ 270 (538)
+|+++|.||||+|++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999998765
Q ss_pred eeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCe-eEeeeEEEEEEeccCCccCcceeecccCCCCChhhHHhhhccC
Q 041228 271 CPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFR-QVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSLYGH 349 (538)
Q Consensus 271 c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~-~v~~~~FGc~~~~~g~f~~~dGILGLg~~~lSl~sQl~~~~~~ 349 (538)
|.|.+.|++|+.+.|++++|+|+|+ +. .++++.|||+..+.+.|...+||||||++.+++++|+...+++
T Consensus 34 ~~~~i~Yg~Gs~~~G~~~~D~v~ig---------~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~ 104 (299)
T cd05472 34 CLYQVSYGDGSYTTGDLATDTLTLG---------SSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGG 104 (299)
T ss_pred CeeeeEeCCCceEEEEEEEEEEEeC---------CCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcC
Confidence 2589999999878999999999997 23 6789999999988887778899999999999999999766778
Q ss_pred ceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCCcccccCCCCCCc
Q 041228 350 SFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGG 429 (538)
Q Consensus 350 ~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~ 429 (538)
+||+||.+.. ....|+|+|||+|+. .+++.|+||+.++. ...+|.|+|++|+||++.+.+++.. ....+
T Consensus 105 ~FS~~L~~~~--~~~~G~l~fGg~d~~--~g~l~~~pv~~~~~--~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~ 173 (299)
T cd05472 105 VFSYCLPDRS--SSSSGYLSFGAAASV--PAGASFTPMLSNPR--VPTFYYVGLTGISVGGRRLPIPPAS-----FGAGG 173 (299)
T ss_pred ceEEEccCCC--CCCCceEEeCCcccc--CCCceECCCccCCC--CCCeEEEeeEEEEECCEECCCCccc-----cCCCC
Confidence 9999997643 133699999999987 78999999996532 3479999999999999998765422 12468
Q ss_pred EEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEEEeCCCccEEEecC
Q 041228 430 TIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDP 509 (538)
Q Consensus 430 aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~ 509 (538)
+||||||++++||+++|++|.++|.+.+..++...+...++.||+.+......+|+|+|+|++|+.|.|++++|+++...
T Consensus 174 ~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~ 253 (299)
T cd05472 174 VIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDD 253 (299)
T ss_pred eEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecC
Confidence 99999999999999999999999998876554444445556799876555567999999997689999999999995433
Q ss_pred CCcEEEEEEecC-CCCceEecHhhhceeeC
Q 041228 510 EDVVCLAILGTP-RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 510 ~~~~Claf~~~~-~~~~~IiGn~~qq~~~V 538 (538)
.+..|++|.... ....||||+.|||+++|
T Consensus 254 ~~~~C~~~~~~~~~~~~~ilG~~fl~~~~v 283 (299)
T cd05472 254 SSQVCLAFAGTSDDGGLSIIGNVQQQTFRV 283 (299)
T ss_pred CCCEEEEEeCCCCCCCCEEEchHHccceEE
Confidence 567899987753 35679999999999985
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=8.6e-49 Score=404.93 Aligned_cols=287 Identities=23% Similarity=0.401 Sum_probs=237.4
Q ss_pred ccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCC
Q 041228 186 SLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQ 265 (538)
Q Consensus 186 ~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~ 265 (538)
+..+.+|+++|.||||+|++.|+|||||+++||+|..|..|.++.++.|||++|+||+...
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~------------------- 65 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG------------------- 65 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC-------------------
Confidence 3457899999999999999999999999999999999987666777999999999998653
Q ss_pred CCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCcc---CcceeecccCCCCC----
Q 041228 266 AENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFH---GAAGLLGLGRGPLS---- 338 (538)
Q Consensus 266 ~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~---~~dGILGLg~~~lS---- 338 (538)
|.|.+.|++|+ +.|.++.|+|+|+ +..++++.|||++...+.+. ..+||||||++.++
T Consensus 66 -----~~~~~~yg~gs-~~G~~~~D~v~ig---------~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 130 (317)
T cd05478 66 -----QPLSIQYGTGS-MTGILGYDTVQVG---------GISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGA 130 (317)
T ss_pred -----cEEEEEECCce-EEEEEeeeEEEEC---------CEEECCEEEEEEEecCccccccccccceeeeccchhcccCC
Confidence 57999999997 7999999999998 46789999999998777542 46999999987654
Q ss_pred --hhhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeee
Q 041228 339 --FSSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVL 413 (538)
Q Consensus 339 --l~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l 413 (538)
++.|| ++++. ++||+||.+.. ...|+|+|||+|+.++.++++|+|+. ...||.|.|++|.|+|+.+
T Consensus 131 ~~~~~~L~~~g~i~~~~FS~~L~~~~---~~~g~l~~Gg~d~~~~~g~l~~~p~~------~~~~w~v~l~~v~v~g~~~ 201 (317)
T cd05478 131 TPVFDNMMSQGLVSQDLFSVYLSSNG---QQGSVVTFGGIDPSYYTGSLNWVPVT------AETYWQITVDSVTINGQVV 201 (317)
T ss_pred CCHHHHHHhCCCCCCCEEEEEeCCCC---CCCeEEEEcccCHHHccCceEEEECC------CCcEEEEEeeEEEECCEEE
Confidence 56666 34554 69999997532 23589999999999999999999997 3589999999999999987
Q ss_pred ccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecC
Q 041228 414 SIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADG 493 (538)
Q Consensus 414 ~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg 493 (538)
... .+..+||||||++++||+++|++|.+++.... ...+ .+..+|+... .+|.|+|+| +|
T Consensus 202 ~~~---------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~----~~~~-~~~~~C~~~~-----~~P~~~f~f-~g 261 (317)
T cd05478 202 ACS---------GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ----NQNG-EMVVNCSSIS-----SMPDVVFTI-NG 261 (317)
T ss_pred ccC---------CCCEEEECCCchhhhCCHHHHHHHHHHhCCcc----ccCC-cEEeCCcCcc-----cCCcEEEEE-CC
Confidence 632 24589999999999999999999887663321 1122 2235998765 589999999 78
Q ss_pred eEEEeCCCccEEEecCCCcEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 494 GVWNFPVENYFIRLDPEDVVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 494 ~~~~lp~~~yl~~~~~~~~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
+.|.||+++|+++. ..+|+. |+.......||||+.|||++|+
T Consensus 262 ~~~~i~~~~y~~~~---~~~C~~~~~~~~~~~~~IlG~~fl~~~y~ 304 (317)
T cd05478 262 VQYPLPPSAYILQD---QGSCTSGFQSMGLGELWILGDVFIRQYYS 304 (317)
T ss_pred EEEEECHHHheecC---CCEEeEEEEeCCCCCeEEechHHhcceEE
Confidence 99999999999864 468985 6665445689999999999985
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.3e-48 Score=401.69 Aligned_cols=290 Identities=22% Similarity=0.439 Sum_probs=231.5
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCC--cCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDC--FEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQ 265 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C--~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~ 265 (538)
.+.+|+++|.||||+|+|.|+|||||+++||+|..|..| .+..++.|||++|+||+..
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~-------------------- 62 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKN-------------------- 62 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeC--------------------
Confidence 467899999999999999999999999999999999631 2234579999999999753
Q ss_pred CCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecccCCCCChh--
Q 041228 266 AENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLGRGPLSFS-- 340 (538)
Q Consensus 266 ~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg~~~lSl~-- 340 (538)
.|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||+....+. | ...+||||||++.++..
T Consensus 63 ----~~~~~i~Yg~G~-~~G~~~~D~v~~g---------~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 128 (325)
T cd05490 63 ----GTEFAIQYGSGS-LSGYLSQDTVSIG---------GLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGV 128 (325)
T ss_pred ----CcEEEEEECCcE-EEEEEeeeEEEEC---------CEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCC
Confidence 268999999996 7999999999998 467899999999987663 3 25699999999877643
Q ss_pred ----hHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeee
Q 041228 341 ----SQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVL 413 (538)
Q Consensus 341 ----sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l 413 (538)
.+| ++++ .++||+||.... +....|+|+|||+|+.++.+++.|+|+. ...+|.|+|++|.||++..
T Consensus 129 ~~~~~~l~~~g~i~~~~FS~~L~~~~-~~~~~G~l~~Gg~d~~~~~g~l~~~~~~------~~~~w~v~l~~i~vg~~~~ 201 (325)
T cd05490 129 TPVFDNIMAQKLVEQNVFSFYLNRDP-DAQPGGELMLGGTDPKYYTGDLHYVNVT------RKAYWQIHMDQVDVGSGLT 201 (325)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEeCCC-CCCCCCEEEECccCHHHcCCceEEEEcC------cceEEEEEeeEEEECCeee
Confidence 354 3344 469999997432 2223699999999999999999999996 3479999999999998643
Q ss_pred ccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecC
Q 041228 414 SIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADG 493 (538)
Q Consensus 414 ~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg 493 (538)
.. ..+..+||||||++++||.++|++|.++|. ..+...+. +..+|++.. .+|+|+|+| +|
T Consensus 202 ~~---------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~----~~~~~~~~-~~~~C~~~~-----~~P~i~f~f-gg 261 (325)
T cd05490 202 LC---------KGGCEAIVDTGTSLITGPVEEVRALQKAIG----AVPLIQGE-YMIDCEKIP-----TLPVISFSL-GG 261 (325)
T ss_pred ec---------CCCCEEEECCCCccccCCHHHHHHHHHHhC----CccccCCC-EEecccccc-----cCCCEEEEE-CC
Confidence 21 124689999999999999999999877663 23333333 346999765 589999999 89
Q ss_pred eEEEeCCCccEEEecC-CCcEEEE-EEec----CCCCceEecHhhhceeeC
Q 041228 494 GVWNFPVENYFIRLDP-EDVVCLA-ILGT----PRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 494 ~~~~lp~~~yl~~~~~-~~~~Cla-f~~~----~~~~~~IiGn~~qq~~~V 538 (538)
+.|.|++++|+++... ....|++ |+.. +....||||+.|||++|+
T Consensus 262 ~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~ 312 (325)
T cd05490 262 KVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYT 312 (325)
T ss_pred EEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEE
Confidence 9999999999997653 2468984 6652 234689999999999985
No 7
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.6e-48 Score=403.12 Aligned_cols=287 Identities=25% Similarity=0.424 Sum_probs=229.2
Q ss_pred eeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCC
Q 041228 190 GEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQ 269 (538)
Q Consensus 190 ~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~ 269 (538)
+.|+++|.||||+|++.|+|||||+++||+|.+|..|..+.++.|||++|+|++.+.|++..|.. ...|. ++
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~------~~~~~--~~ 73 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY------CLSCL--NN 73 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc------cCcCC--CC
Confidence 58999999999999999999999999999999999999888899999999999999999999943 12453 34
Q ss_pred ceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCcc--CcceeecccCCCCCh-hh---HH
Q 041228 270 TCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFH--GAAGLLGLGRGPLSF-SS---QL 343 (538)
Q Consensus 270 ~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~--~~dGILGLg~~~lSl-~s---Ql 343 (538)
.|.|.+.|++|+.+.|.+++|+|+|+..... .......++.|||+....+.|. ..+||||||+...+. .. ++
T Consensus 74 ~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~--~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l 151 (326)
T cd06096 74 KCEYSISYSEGSSISGFYFSDFVSFESYLNS--NSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILL 151 (326)
T ss_pred cCcEEEEECCCCceeeEEEEEEEEeccCCCC--ccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHH
Confidence 6999999999988999999999999732110 0001123588999998877663 679999999987532 11 11
Q ss_pred -h-h-hc--cCceEEEecCCCCCCCCCcceEecCCCCCCCC----------CCceeEeeccCCCCCccceEEEEEeeEEe
Q 041228 344 -Q-S-LY--GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNH----------PNLNFTSLVSGKENPVDTFYYLQIKSIIV 408 (538)
Q Consensus 344 -~-~-~~--~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~----------g~l~~tPl~~~~~~~~~~~y~V~L~gIsV 408 (538)
+ . .. .++||+||++. .|+|+|||+|+.++. +++.|+|+.. ..+|.|.|++|+|
T Consensus 152 ~~~~~~~~~~~~FS~~l~~~------~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~------~~~y~v~l~~i~v 219 (326)
T cd06096 152 FTKRPKLKKDKIFSICLSED------GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR------KYYYYVKLEGLSV 219 (326)
T ss_pred HHhcccccCCceEEEEEcCC------CeEEEECccChhhhcccccccccccCCceEEeccC------CceEEEEEEEEEE
Confidence 1 1 12 37999999742 489999999988876 7899999983 3789999999999
Q ss_pred CCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEE
Q 041228 409 GGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGI 488 (538)
Q Consensus 409 gG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f 488 (538)
+++...+. ......+||||||++++||+++|++|+++| |+|+|
T Consensus 220 g~~~~~~~-------~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~ 262 (326)
T cd06096 220 YGTTSNSG-------NTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITI 262 (326)
T ss_pred ccccccee-------cccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEE
Confidence 98861110 123578999999999999999999987665 89999
Q ss_pred EEecCeEEEeCCCccEEEecCCCcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 489 QFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 489 ~F~gg~~~~lp~~~yl~~~~~~~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|++|++++|+|++|+++.+ ....|+++... .+.||||+.|||++||
T Consensus 263 ~f~~g~~~~i~p~~y~~~~~-~~~c~~~~~~~--~~~~ILG~~flr~~y~ 309 (326)
T cd06096 263 IFENNLKIDWKPSSYLYKKE-SFWCKGGEKSV--SNKPILGASFFKNKQI 309 (326)
T ss_pred EEcCCcEEEECHHHhccccC-CceEEEEEecC--CCceEEChHHhcCcEE
Confidence 99668999999999999865 33345556543 4689999999999985
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=9.4e-48 Score=397.01 Aligned_cols=285 Identities=22% Similarity=0.363 Sum_probs=228.7
Q ss_pred EEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCCce
Q 041228 192 YFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTC 271 (538)
Q Consensus 192 Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~~c 271 (538)
|+++|.||||+|+++|+|||||+++||+|..|..+.++.++.|||++|+||+... |
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~------------------------~ 56 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG------------------------E 56 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC------------------------c
Confidence 8999999999999999999999999999999974333455899999999997653 6
Q ss_pred eeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecccCCCCCh------hhH
Q 041228 272 PYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLGRGPLSF------SSQ 342 (538)
Q Consensus 272 ~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg~~~lSl------~sQ 342 (538)
.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||+....+. | ...+||||||++.++. ..+
T Consensus 57 ~~~i~Yg~g~-~~G~~~~D~v~ig---------~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~ 126 (316)
T cd05486 57 AFSIQYGTGS-LTGIIGIDQVTVE---------GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDN 126 (316)
T ss_pred EEEEEeCCcE-EEEEeeecEEEEC---------CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHH
Confidence 8999999996 8999999999997 568899999999877653 3 2579999999987663 344
Q ss_pred H--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCCcc
Q 041228 343 L--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDET 419 (538)
Q Consensus 343 l--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~~~ 419 (538)
| ++++. ++||+||.+... ....|.|+|||+|+.++.+++.|+|+. ...||.|.|++|.|||+.+..+
T Consensus 127 l~~qg~i~~~~FS~~L~~~~~-~~~~g~l~fGg~d~~~~~g~l~~~pi~------~~~~w~v~l~~i~v~g~~~~~~--- 196 (316)
T cd05486 127 MMAQNLVELPMFSVYMSRNPN-SADGGELVFGGFDTSRFSGQLNWVPVT------VQGYWQIQLDNIQVGGTVIFCS--- 196 (316)
T ss_pred HHhcCCCCCCEEEEEEccCCC-CCCCcEEEEcccCHHHcccceEEEECC------CceEEEEEeeEEEEecceEecC---
Confidence 4 34454 589999975322 223699999999999999999999997 3579999999999999876532
Q ss_pred cccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEEEeC
Q 041228 420 WRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFP 499 (538)
Q Consensus 420 f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~~lp 499 (538)
.+..+||||||++++||+++|++|.+++. ... ..+. +..+|+... .+|+|+|+| +|+.|+|+
T Consensus 197 ------~~~~aiiDTGTs~~~lP~~~~~~l~~~~~----~~~-~~~~-~~~~C~~~~-----~~p~i~f~f-~g~~~~l~ 258 (316)
T cd05486 197 ------DGCQAIVDTGTSLITGPSGDIKQLQNYIG----ATA-TDGE-YGVDCSTLS-----LMPSVTFTI-NGIPYSLS 258 (316)
T ss_pred ------CCCEEEECCCcchhhcCHHHHHHHHHHhC----Ccc-cCCc-EEEeccccc-----cCCCEEEEE-CCEEEEeC
Confidence 23689999999999999999999866552 211 1222 345998765 489999999 78999999
Q ss_pred CCccEEEecC-CCcEEE-EEEecC----CCCceEecHhhhceeeC
Q 041228 500 VENYFIRLDP-EDVVCL-AILGTP----RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 500 ~~~yl~~~~~-~~~~Cl-af~~~~----~~~~~IiGn~~qq~~~V 538 (538)
+++|++.... .+.+|+ +|+... ....||||+.|||++|+
T Consensus 259 ~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~ 303 (316)
T cd05486 259 PQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYS 303 (316)
T ss_pred HHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEE
Confidence 9999987532 356897 576532 34579999999999985
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3e-47 Score=393.43 Aligned_cols=285 Identities=23% Similarity=0.418 Sum_probs=232.2
Q ss_pred eeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCC
Q 041228 190 GEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQ 269 (538)
Q Consensus 190 ~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~ 269 (538)
..|+++|.||||+|++.|+|||||+++||+|..|..+.+..++.|||++|+||+..
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~------------------------ 57 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTN------------------------ 57 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceEC------------------------
Confidence 57999999999999999999999999999999998655555689999999999754
Q ss_pred ceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecccCCCC------Chh
Q 041228 270 TCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLGRGPL------SFS 340 (538)
Q Consensus 270 ~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg~~~l------Sl~ 340 (538)
.|.|.+.|++|+ +.|.++.|+|+|+ +..++++.|||++...+. | ...+||||||++.+ +++
T Consensus 58 ~~~~~~~Yg~Gs-~~G~~~~D~i~~g---------~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~ 127 (318)
T cd05477 58 GETFSLQYGSGS-LTGIFGYDTVTVQ---------GIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVM 127 (318)
T ss_pred CcEEEEEECCcE-EEEEEEeeEEEEC---------CEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHH
Confidence 268999999997 7999999999998 568899999999987654 2 35699999998643 456
Q ss_pred hHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCC
Q 041228 341 SQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPD 417 (538)
Q Consensus 341 sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~ 417 (538)
.|| ++.+ .++||+||.+... ...|.|+|||+|+.++.+++.|+|+. ...+|.|.|++|.|||+.+.+..
T Consensus 128 ~~L~~~g~i~~~~FS~~L~~~~~--~~~g~l~fGg~d~~~~~g~l~~~pv~------~~~~w~v~l~~i~v~g~~~~~~~ 199 (318)
T cd05477 128 QGMMQQNLLQAPIFSFYLSGQQG--QQGGELVFGGVDNNLYTGQIYWTPVT------SETYWQIGIQGFQINGQATGWCS 199 (318)
T ss_pred HHHHhcCCcCCCEEEEEEcCCCC--CCCCEEEEcccCHHHcCCceEEEecC------CceEEEEEeeEEEECCEEecccC
Confidence 676 3344 4699999976422 23599999999999999999999997 35799999999999998875422
Q ss_pred cccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEEE
Q 041228 418 ETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWN 497 (538)
Q Consensus 418 ~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~~ 497 (538)
.+..+||||||++++||+++|++|+++|..... ..+. +..+|+... .+|+|+|+| +|+++.
T Consensus 200 --------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~----~~~~-~~~~C~~~~-----~~p~l~~~f-~g~~~~ 260 (318)
T cd05477 200 --------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD----QYGQ-YVVNCNNIQ-----NLPTLTFTI-NGVSFP 260 (318)
T ss_pred --------CCceeeECCCCccEECCHHHHHHHHHHhCCccc----cCCC-EEEeCCccc-----cCCcEEEEE-CCEEEE
Confidence 235799999999999999999998877754322 1222 346999865 489999999 789999
Q ss_pred eCCCccEEEecCCCcEEE-EEEec-----CCCCceEecHhhhceeeC
Q 041228 498 FPVENYFIRLDPEDVVCL-AILGT-----PRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 498 lp~~~yl~~~~~~~~~Cl-af~~~-----~~~~~~IiGn~~qq~~~V 538 (538)
||+++|++.. ..+|+ +|.+. .+...||||+.|||++|+
T Consensus 261 v~~~~y~~~~---~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~ 304 (318)
T cd05477 261 LPPSAYILQN---NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYS 304 (318)
T ss_pred ECHHHeEecC---CCeEEEEEEecccCCCCCCceEEEcHHHhhheEE
Confidence 9999999864 46896 67653 123579999999999885
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1e-46 Score=390.06 Aligned_cols=286 Identities=22% Similarity=0.377 Sum_probs=230.0
Q ss_pred ccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCC
Q 041228 186 SLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQ 265 (538)
Q Consensus 186 ~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~ 265 (538)
...+.+|+++|.||||+|++.|+|||||+++||+|.+|..+.+..++.|||++|+|++..
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~-------------------- 64 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKAN-------------------- 64 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeC--------------------
Confidence 345788999999999999999999999999999999997533344579999999998743
Q ss_pred CCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc---cCcceeecccCCCCChhh-
Q 041228 266 AENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF---HGAAGLLGLGRGPLSFSS- 341 (538)
Q Consensus 266 ~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f---~~~dGILGLg~~~lSl~s- 341 (538)
.|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||++...|.. ...+||||||++.++...
T Consensus 65 ----~~~~~~~y~~g~-~~G~~~~D~v~ig---------~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~ 130 (320)
T cd05488 65 ----GTEFKIQYGSGS-LEGFVSQDTLSIG---------DLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKI 130 (320)
T ss_pred ----CCEEEEEECCce-EEEEEEEeEEEEC---------CEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCC
Confidence 268999999997 7999999999997 4678899999998877652 357999999998877543
Q ss_pred -----HH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeee
Q 041228 342 -----QL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVL 413 (538)
Q Consensus 342 -----Ql--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l 413 (538)
++ ++++ .++||+||.+.. ...|.|+|||+|+.++.+++.|+|++ ...+|.|+|++|+||++.+
T Consensus 131 ~~~~~~l~~qg~i~~~~FS~~L~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~w~v~l~~i~vg~~~~ 201 (320)
T cd05488 131 VPPFYNMINQGLLDEPVFSFYLGSSE---EDGGEATFGGIDESRFTGKITWLPVR------RKAYWEVELEKIGLGDEEL 201 (320)
T ss_pred CCHHHHHHhcCCCCCCEEEEEecCCC---CCCcEEEECCcCHHHcCCceEEEeCC------cCcEEEEEeCeEEECCEEe
Confidence 22 3444 458999997643 23699999999999999999999997 3479999999999999877
Q ss_pred ccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecC
Q 041228 414 SIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADG 493 (538)
Q Consensus 414 ~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg 493 (538)
... +..+||||||++++||++++++|.+++. ......+.+ ..+|++.. .+|.|+|+| +|
T Consensus 202 ~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~----~~~~~~~~~-~~~C~~~~-----~~P~i~f~f-~g 260 (320)
T cd05488 202 ELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIG----AKKSWNGQY-TVDCSKVD-----SLPDLTFNF-DG 260 (320)
T ss_pred ccC----------CCeEEEcCCcccccCCHHHHHHHHHHhC----CccccCCcE-Eeeccccc-----cCCCEEEEE-CC
Confidence 532 3579999999999999999999776653 221122222 35898765 589999999 78
Q ss_pred eEEEeCCCccEEEecCCCcEEEE-EEecC----CCCceEecHhhhceeeC
Q 041228 494 GVWNFPVENYFIRLDPEDVVCLA-ILGTP----RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 494 ~~~~lp~~~yl~~~~~~~~~Cla-f~~~~----~~~~~IiGn~~qq~~~V 538 (538)
++|.||+++|+++. ...|+. +.... ....||||+.|||++|+
T Consensus 261 ~~~~i~~~~y~~~~---~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~ 307 (320)
T cd05488 261 YNFTLGPFDYTLEV---SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYS 307 (320)
T ss_pred EEEEECHHHheecC---CCeEEEEEEECcCCCCCCCeEEEchHHhhheEE
Confidence 99999999999864 357985 54421 23479999999999885
No 11
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.5e-46 Score=388.90 Aligned_cols=289 Identities=23% Similarity=0.440 Sum_probs=234.0
Q ss_pred ccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC----CCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCC
Q 041228 186 SLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY----DCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPP 261 (538)
Q Consensus 186 ~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~----~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~ 261 (538)
+..+.+|+++|.||||+|++.|+|||||+++||+|..|. .|. .++.|||++|+|++...
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~--~~~~y~~~~Sst~~~~~--------------- 68 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACL--LHNKYDSTKSSTYKKNG--------------- 68 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCcccc--CCCeECCcCCCCeEECC---------------
Confidence 577899999999999999999999999999999999996 454 35789999999987643
Q ss_pred CCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecccCCCCC
Q 041228 262 RPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLGRGPLS 338 (538)
Q Consensus 262 ~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg~~~lS 338 (538)
|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||+....+. | ...+||||||++.++
T Consensus 69 ---------~~~~i~Y~~g~-~~G~~~~D~v~ig---------~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s 129 (329)
T cd05485 69 ---------TEFAIQYGSGS-LSGFLSTDTVSVG---------GVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSIS 129 (329)
T ss_pred ---------eEEEEEECCce-EEEEEecCcEEEC---------CEEECCEEEEEEEecCCccccccccceEEEcCCcccc
Confidence 78999999997 8999999999997 467889999999887663 3 256999999998776
Q ss_pred h------hhHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeC
Q 041228 339 F------SSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVG 409 (538)
Q Consensus 339 l------~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVg 409 (538)
. ..|| ++++ .++||+||..... ....|+|+|||+|+.++.+++.|+|+. ...+|.|.+++|.|+
T Consensus 130 ~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~-~~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~~~v~~~~i~v~ 202 (329)
T cd05485 130 VDGVVPVFYNMVNQKLVDAPVFSFYLNRDPS-AKEGGELILGGSDPKHYTGNFTYLPVT------RKGYWQFKMDSVSVG 202 (329)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEecCCCC-CCCCcEEEEcccCHHHcccceEEEEcC------CceEEEEEeeEEEEC
Confidence 4 3455 3455 4599999975332 223699999999999999999999997 357999999999999
Q ss_pred CeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEE
Q 041228 410 GEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQ 489 (538)
Q Consensus 410 G~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~ 489 (538)
++.+. .....+||||||++++||+++|++|.+++.. .....+. +..+|+... .+|+|+|+
T Consensus 203 ~~~~~----------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~----~~~~~~~-~~~~C~~~~-----~~p~i~f~ 262 (329)
T cd05485 203 EGEFC----------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGA----KPIIGGE-YMVNCSAIP-----SLPDITFV 262 (329)
T ss_pred Ceeec----------CCCcEEEEccCCcceeCCHHHHHHHHHHhCC----ccccCCc-EEEeccccc-----cCCcEEEE
Confidence 98654 1235899999999999999999998776632 1112222 346998755 48999999
Q ss_pred EecCeEEEeCCCccEEEecC-CCcEEE-EEEec----CCCCceEecHhhhceeeC
Q 041228 490 FADGGVWNFPVENYFIRLDP-EDVVCL-AILGT----PRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 490 F~gg~~~~lp~~~yl~~~~~-~~~~Cl-af~~~----~~~~~~IiGn~~qq~~~V 538 (538)
| ||+.+.|++++|+++... +..+|+ +|+.. .....||||+.|||++|+
T Consensus 263 f-gg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~ 316 (329)
T cd05485 263 L-GGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYT 316 (329)
T ss_pred E-CCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceE
Confidence 9 789999999999998753 346898 47653 234579999999999985
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.8e-46 Score=386.54 Aligned_cols=279 Identities=24% Similarity=0.451 Sum_probs=226.5
Q ss_pred ccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC---CCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCC
Q 041228 186 SLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY---DCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPR 262 (538)
Q Consensus 186 ~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~---~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~ 262 (538)
...+.+|+++|.||||+|++.|+|||||+++||+|..|. .|.. ++.|||++|+||+...
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~--~~~y~~~~SsT~~~~~---------------- 66 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF--HSKYKSSKSSTYKKNG---------------- 66 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc--cCcCCcccCCCcccCC----------------
Confidence 467899999999999999999999999999999999995 6764 4799999999987543
Q ss_pred CCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecccCCCCCh
Q 041228 263 PCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLGRGPLSF 339 (538)
Q Consensus 263 ~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg~~~lSl 339 (538)
+.+.+.|++|+ +.|.++.|+|+|+ +..++++.|||++...+. | ...+||||||++.++.
T Consensus 67 --------~~~~i~Yg~G~-~~G~~~~D~v~ig---------~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~ 128 (317)
T cd06098 67 --------TSASIQYGTGS-ISGFFSQDSVTVG---------DLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISV 128 (317)
T ss_pred --------CEEEEEcCCce-EEEEEEeeEEEEC---------CEEECCEEEEEEEecCCccccccccceeccccccchhh
Confidence 36889999996 7899999999998 468899999999876553 2 3569999999987664
Q ss_pred h------hHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCC
Q 041228 340 S------SQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGG 410 (538)
Q Consensus 340 ~------sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG 410 (538)
. .+| ++++. ++||+||.+... ....|.|+|||+|+.++.+++.|+|+. ...||.|.|++|.|||
T Consensus 129 ~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~-~~~~G~l~fGg~d~~~~~g~l~~~pv~------~~~~w~v~l~~i~v~g 201 (317)
T cd06098 129 GKAVPVWYNMVEQGLVKEPVFSFWLNRNPD-EEEGGELVFGGVDPKHFKGEHTYVPVT------RKGYWQFEMGDVLIGG 201 (317)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEecCCC-CCCCcEEEECccChhhcccceEEEecC------cCcEEEEEeCeEEECC
Confidence 2 344 34454 589999975322 223699999999999999999999997 3479999999999999
Q ss_pred eeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEE
Q 041228 411 EVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQF 490 (538)
Q Consensus 411 ~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F 490 (538)
+.+.++. ....+||||||++++||+++++++. ...+|++.. .+|+|+|+|
T Consensus 202 ~~~~~~~--------~~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~~~-----~~P~i~f~f 251 (317)
T cd06098 202 KSTGFCA--------GGCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNSLS-----SMPNVSFTI 251 (317)
T ss_pred EEeeecC--------CCcEEEEecCCcceeCCHHHHHhhh-----------------ccCCccccc-----cCCcEEEEE
Confidence 8876432 2358999999999999998776642 124899765 589999999
Q ss_pred ecCeEEEeCCCccEEEecC-CCcEEEE-EEecC----CCCceEecHhhhceeeC
Q 041228 491 ADGGVWNFPVENYFIRLDP-EDVVCLA-ILGTP----RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 491 ~gg~~~~lp~~~yl~~~~~-~~~~Cla-f~~~~----~~~~~IiGn~~qq~~~V 538 (538)
+|+.|+|++++|+++... ....|++ |.... ....||||+.|||++|+
T Consensus 252 -~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~ 304 (317)
T cd06098 252 -GGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHT 304 (317)
T ss_pred -CCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEE
Confidence 789999999999997653 2458984 65432 34579999999999985
No 13
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=3.2e-46 Score=405.03 Aligned_cols=294 Identities=21% Similarity=0.380 Sum_probs=233.1
Q ss_pred eeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCC
Q 041228 178 VATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSS 257 (538)
Q Consensus 178 ~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~ 257 (538)
..||. +..+.+|+++|.||||||+|.|+|||||+++||+|..|..|.++.++.|||++|+||+.+.++.
T Consensus 110 ~~~l~---n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~-------- 178 (482)
T PTZ00165 110 QQDLL---NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD-------- 178 (482)
T ss_pred ceecc---cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC--------
Confidence 34555 5789999999999999999999999999999999999986555667899999999999753111
Q ss_pred CCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-cc--CcceeecccC
Q 041228 258 PDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-FH--GAAGLLGLGR 334 (538)
Q Consensus 258 ~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f~--~~dGILGLg~ 334 (538)
..+.+.+.||+|+ ..|.++.|+|+|+ +..++++.|||++...+. |. .+|||||||+
T Consensus 179 -----------~~~~~~i~YGsGs-~~G~l~~DtV~ig---------~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~ 237 (482)
T PTZ00165 179 -----------ESAETYIQYGTGE-CVLALGKDTVKIG---------GLKVKHQSIGLAIEESLHPFADLPFDGLVGLGF 237 (482)
T ss_pred -----------ccceEEEEeCCCc-EEEEEEEEEEEEC---------CEEEccEEEEEEEeccccccccccccceeecCC
Confidence 0124679999996 7799999999998 578999999999987653 43 5799999999
Q ss_pred CCCC---------hhhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCC--CCCceeEeeccCCCCCccceEE
Q 041228 335 GPLS---------FSSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLN--HPNLNFTSLVSGKENPVDTFYY 400 (538)
Q Consensus 335 ~~lS---------l~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~--~g~l~~tPl~~~~~~~~~~~y~ 400 (538)
+.++ ++.++ ++++. ++||+||.... ...|+|+|||+|+.++ .+++.|+|+. ...||.
T Consensus 238 ~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~---~~~G~l~fGGiD~~~~~~~g~i~~~Pv~------~~~yW~ 308 (482)
T PTZ00165 238 PDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDL---NQPGSISFGSADPKYTLEGHKIWWFPVI------STDYWE 308 (482)
T ss_pred CcccccccCCCCCHHHHHHHcCCcccceEEEEeccCC---CCCCEEEeCCcCHHHcCCCCceEEEEcc------ccceEE
Confidence 8763 33445 34554 59999996432 2269999999998766 5689999997 357999
Q ss_pred EEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcc
Q 041228 401 LQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEK 480 (538)
Q Consensus 401 V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~ 480 (538)
|.|++|.|||+.+.+.. ....+||||||+++++|+++|++|.+++ +. ..+|++..
T Consensus 309 i~l~~i~vgg~~~~~~~--------~~~~aIiDTGTSli~lP~~~~~~i~~~i----~~---------~~~C~~~~---- 363 (482)
T PTZ00165 309 IEVVDILIDGKSLGFCD--------RKCKAAIDTGSSLITGPSSVINPLLEKI----PL---------EEDCSNKD---- 363 (482)
T ss_pred EEeCeEEECCEEeeecC--------CceEEEEcCCCccEeCCHHHHHHHHHHc----CC---------cccccccc----
Confidence 99999999998876532 2468999999999999999999877654 21 13898765
Q ss_pred cccceEEEEEec--C--eEEEeCCCccEEEe---cCCCcEEE-EEEecC----CCCceEecHhhhceeeC
Q 041228 481 MELPEFGIQFAD--G--GVWNFPVENYFIRL---DPEDVVCL-AILGTP----RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 481 ~~lP~I~f~F~g--g--~~~~lp~~~yl~~~---~~~~~~Cl-af~~~~----~~~~~IiGn~~qq~~~V 538 (538)
.+|+|+|+|.| | ++|.|+|++|+++. ...+..|+ +|.+.+ .+..||||++|||++|+
T Consensus 364 -~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~ 432 (482)
T PTZ00165 364 -SLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYS 432 (482)
T ss_pred -cCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEE
Confidence 48999999942 2 38999999999974 22456896 677642 34689999999999984
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=8.5e-46 Score=384.19 Aligned_cols=289 Identities=20% Similarity=0.357 Sum_probs=229.2
Q ss_pred cCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCC--cCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCC
Q 041228 187 LGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDC--FEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPC 264 (538)
Q Consensus 187 ~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C--~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C 264 (538)
..+..|+++|.||||+|++.|+|||||+++||+|..|..| .+..++.|||++|+||+..
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~------------------- 64 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKEN------------------- 64 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeEC-------------------
Confidence 4578899999999999999999999999999999988642 3345579999999999854
Q ss_pred CCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccC-Cc--cCcceeecccCCCCCh--
Q 041228 265 QAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRG-LF--HGAAGLLGLGRGPLSF-- 339 (538)
Q Consensus 265 ~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g-~f--~~~dGILGLg~~~lSl-- 339 (538)
.|.|.+.|++|+ +.|.+++|+|+|+ +..+ ++.|||.....+ .| ...+||||||++..+.
T Consensus 65 -----~~~~~~~Yg~g~-~~G~~~~D~v~~g---------~~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 128 (326)
T cd05487 65 -----GTEFTIHYASGT-VKGFLSQDIVTVG---------GIPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGG 128 (326)
T ss_pred -----CEEEEEEeCCce-EEEEEeeeEEEEC---------CEEe-eEEEEEEEeccCCccceeecceEEecCChhhcccC
Confidence 278999999996 8999999999997 3455 478999887543 12 3679999999976652
Q ss_pred ----hhHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCee
Q 041228 340 ----SSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEV 412 (538)
Q Consensus 340 ----~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~ 412 (538)
+.+| ++.+ .++||+||.+.+ .....|+|+|||+|+.++.+++.|+|+. ...+|.|.|++|+||++.
T Consensus 129 ~~~~~~~L~~qg~i~~~~FS~~L~~~~-~~~~~G~l~fGg~d~~~y~g~l~~~~~~------~~~~w~v~l~~i~vg~~~ 201 (326)
T cd05487 129 VTPVFDNIMSQGVLKEDVFSVYYSRDS-SHSLGGEIVLGGSDPQHYQGDFHYINTS------KTGFWQIQMKGVSVGSST 201 (326)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEeCCC-CCCCCcEEEECCcChhhccCceEEEECC------cCceEEEEecEEEECCEE
Confidence 2333 3444 459999997543 2233699999999999999999999986 357999999999999987
Q ss_pred eccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEec
Q 041228 413 LSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFAD 492 (538)
Q Consensus 413 l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~g 492 (538)
+... .+..+||||||++++||.++|++|.+++... .. .+ .+..+|+... .+|+|+|+| +
T Consensus 202 ~~~~---------~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~----~~-~~-~y~~~C~~~~-----~~P~i~f~f-g 260 (326)
T cd05487 202 LLCE---------DGCTAVVDTGASFISGPTSSISKLMEALGAK----ER-LG-DYVVKCNEVP-----TLPDISFHL-G 260 (326)
T ss_pred EecC---------CCCEEEECCCccchhCcHHHHHHHHHHhCCc----cc-CC-CEEEeccccC-----CCCCEEEEE-C
Confidence 6532 2358999999999999999999987766322 11 22 2356999765 589999999 8
Q ss_pred CeEEEeCCCccEEEecC-CCcEEE-EEEec----CCCCceEecHhhhceeeC
Q 041228 493 GGVWNFPVENYFIRLDP-EDVVCL-AILGT----PRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 493 g~~~~lp~~~yl~~~~~-~~~~Cl-af~~~----~~~~~~IiGn~~qq~~~V 538 (538)
|+.++|++++|+++... .+..|+ +|... +.++.||||+.|||++|+
T Consensus 261 g~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~ 312 (326)
T cd05487 261 GKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYT 312 (326)
T ss_pred CEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEE
Confidence 99999999999997642 356897 67653 233579999999999985
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.4e-45 Score=388.17 Aligned_cols=302 Identities=17% Similarity=0.246 Sum_probs=227.1
Q ss_pred eeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCC
Q 041228 190 GEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQ 269 (538)
Q Consensus 190 ~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~ 269 (538)
.+|+++|.||||+|+|.|+|||||+++||+|.+|.. .++.|||++|+||+...
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~----~~~~f~~~~SsT~~~~~----------------------- 54 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF----IHTYFHRELSSTYRDLG----------------------- 54 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc----ccccCCchhCcCcccCC-----------------------
Confidence 369999999999999999999999999999998832 34689999999998664
Q ss_pred ceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCcc---CcceeecccCCCCCh-------
Q 041228 270 TCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFH---GAAGLLGLGRGPLSF------- 339 (538)
Q Consensus 270 ~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~---~~dGILGLg~~~lSl------- 339 (538)
|.|.+.|++|+ +.|.+++|+|+|+... ...+ .+.|++.....+.|. ..+||||||++.++.
T Consensus 55 -~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~------~~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~ 125 (364)
T cd05473 55 -KGVTVPYTQGS-WEGELGTDLVSIPKGP------NVTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEP 125 (364)
T ss_pred -ceEEEEECcce-EEEEEEEEEEEECCCC------ccce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCC
Confidence 67999999996 6899999999997210 1122 244667766665542 469999999987642
Q ss_pred -hhHH--hhhccCceEEEecCC----CC--CCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCC
Q 041228 340 -SSQL--QSLYGHSFSYCLVDR----NS--DTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGG 410 (538)
Q Consensus 340 -~sQl--~~~~~~~FSycL~~~----~~--~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG 410 (538)
..+| +..+.++||++|... +. .....|.|+|||+|+.++.+++.|+|++ ...+|.|.|++|.||+
T Consensus 126 ~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~------~~~~~~v~l~~i~vg~ 199 (364)
T cd05473 126 FFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR------EEWYYEVIILKLEVGG 199 (364)
T ss_pred HHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC------cceeEEEEEEEEEECC
Confidence 2233 333556999976321 11 1223699999999999999999999997 3478999999999999
Q ss_pred eeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCC--CCceecccCCCCCcccccceEEE
Q 041228 411 EVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKD--FPILDPCYNVSGIEKMELPEFGI 488 (538)
Q Consensus 411 ~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~--~~~ld~C~~~s~~~~~~lP~I~f 488 (538)
+.+.++...+. ...+||||||++++||+++|++|+++|.+++........ .....+|++........+|+|+|
T Consensus 200 ~~~~~~~~~~~-----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~ 274 (364)
T cd05473 200 QSLNLDCKEYN-----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISI 274 (364)
T ss_pred Eeccccccccc-----CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEE
Confidence 98876544331 247999999999999999999999999887642111111 11235899865332345899999
Q ss_pred EEecC-----eEEEeCCCccEEEecC--CCcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 489 QFADG-----GVWNFPVENYFIRLDP--EDVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 489 ~F~gg-----~~~~lp~~~yl~~~~~--~~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|.|+ ..+.|+|++|+..... .+..|+++......+.||||++|||++||
T Consensus 275 ~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yv 331 (364)
T cd05473 275 YLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYV 331 (364)
T ss_pred EEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEE
Confidence 99652 4789999999986532 24689876544334579999999999986
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=5.1e-45 Score=392.86 Aligned_cols=289 Identities=19% Similarity=0.316 Sum_probs=229.1
Q ss_pred eeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCC
Q 041228 179 ATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSP 258 (538)
Q Consensus 179 ~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~ 258 (538)
+||. ...+.+|+++|.||||+|+|.|+|||||+++||+|..|..|.|+.++.|||++|+||+...
T Consensus 130 v~L~---n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~------------ 194 (453)
T PTZ00147 130 VELK---DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG------------ 194 (453)
T ss_pred eecc---ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC------------
Confidence 4554 4677899999999999999999999999999999999986666667899999999997653
Q ss_pred CCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC---c--cCcceeeccc
Q 041228 259 DPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL---F--HGAAGLLGLG 333 (538)
Q Consensus 259 ~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~---f--~~~dGILGLg 333 (538)
|.|.+.||+|+ +.|.++.|+|+|+ +..++ ++|+|+.+..+. + ...+||||||
T Consensus 195 ------------~~f~i~Yg~Gs-vsG~~~~DtVtiG---------~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG 251 (453)
T PTZ00147 195 ------------TKVEMNYVSGT-VSGFFSKDLVTIG---------NLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLG 251 (453)
T ss_pred ------------CEEEEEeCCCC-EEEEEEEEEEEEC---------CEEEE-EEEEEEEeccCcccccccccccceeccc
Confidence 57999999996 8999999999998 45677 689998876552 1 2579999999
Q ss_pred CCCCCh------hhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEe
Q 041228 334 RGPLSF------SSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIK 404 (538)
Q Consensus 334 ~~~lSl------~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~ 404 (538)
++.++. +.+| ++++. ++||+||+... ...|.|+|||+|+.++.+++.|+|+. ...||.|.++
T Consensus 252 ~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~---~~~G~L~fGGiD~~ky~G~l~y~pl~------~~~~W~V~l~ 322 (453)
T PTZ00147 252 WKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPED---KHKGYLTIGGIEERFYEGPLTYEKLN------HDLYWQVDLD 322 (453)
T ss_pred CCccccccCCCHHHHHHHcCCCCccEEEEEecCCC---CCCeEEEECCcChhhcCCceEEEEcC------CCceEEEEEE
Confidence 987764 3355 44554 48999997532 23699999999999999999999996 3479999998
Q ss_pred eEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccc
Q 041228 405 SIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELP 484 (538)
Q Consensus 405 gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP 484 (538)
+.+|+... ....+||||||++++||+++++++.+++.... .+.. + ...++|+.. .+|
T Consensus 323 -~~vg~~~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~-~-~y~~~C~~~------~lP 379 (453)
T PTZ00147 323 -VHFGNVSS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL-P-LYVTTCNNT------KLP 379 (453)
T ss_pred -EEECCEec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC-C-eEEEeCCCC------CCC
Confidence 57776432 13689999999999999999999877663211 1211 1 235699963 489
Q ss_pred eEEEEEecCeEEEeCCCccEEEecC-CCcEEE-EEEecC-CCCceEecHhhhceeeC
Q 041228 485 EFGIQFADGGVWNFPVENYFIRLDP-EDVVCL-AILGTP-RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 485 ~I~f~F~gg~~~~lp~~~yl~~~~~-~~~~Cl-af~~~~-~~~~~IiGn~~qq~~~V 538 (538)
+|+|+| +|..++|+|++|+.+... ....|+ +|++.+ ..+.||||++|||++|+
T Consensus 380 ~~~f~f-~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Yt 435 (453)
T PTZ00147 380 TLEFRS-PNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFT 435 (453)
T ss_pred eEEEEE-CCEEEEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEE
Confidence 999999 789999999999986432 345797 577654 34589999999999985
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=5.6e-45 Score=369.25 Aligned_cols=244 Identities=32% Similarity=0.662 Sum_probs=200.7
Q ss_pred eeEEEEEEeCCCCceeeEEEecCCCceeEECC-CCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCC
Q 041228 190 GEYFMDVFVGTPPKHYYFILDTGSDLNWIQCV-PCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAEN 268 (538)
Q Consensus 190 ~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~-~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~ 268 (538)
|+|+++|.||||+|++.|+|||||+++||+|. +|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 57999999999999999999999999999994 67555
Q ss_pred CceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc----cCcceeecccCCCCChhhHHh
Q 041228 269 QTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF----HGAAGLLGLGRGPLSFSSQLQ 344 (538)
Q Consensus 269 ~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f----~~~dGILGLg~~~lSl~sQl~ 344 (538)
.|.|.+.|+||+.+.|.+++|+|+|+... + ...++++.|||+..+.+.+ ...+||||||++++++++|+.
T Consensus 39 -~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~--~---~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~ 112 (273)
T cd05475 39 -QCDYEIEYADGGSSMGVLVTDIFSLKLTN--G---SRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLA 112 (273)
T ss_pred -cCccEeEeCCCCceEEEEEEEEEEEeecC--C---CcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHH
Confidence 16799999988889999999999996321 1 2467789999998876643 257999999999999999984
Q ss_pred --hhccCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCCccccc
Q 041228 345 --SLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRL 422 (538)
Q Consensus 345 --~~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~~~f~~ 422 (538)
++++++||+||++. ..|.|+||+. .++.++++|+||..++ ...+|.|+|.+|+||++.+.
T Consensus 113 ~~~~i~~~Fs~~l~~~-----~~g~l~~G~~--~~~~g~i~ytpl~~~~---~~~~y~v~l~~i~vg~~~~~-------- 174 (273)
T cd05475 113 SQGIIKNVIGHCLSSN-----GGGFLFFGDD--LVPSSGVTWTPMRRES---QKKHYSPGPASLLFNGQPTG-------- 174 (273)
T ss_pred hcCCcCceEEEEccCC-----CCeEEEECCC--CCCCCCeeecccccCC---CCCeEEEeEeEEEECCEECc--------
Confidence 45677999999751 2589999943 4456789999998643 34799999999999998532
Q ss_pred CCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecC---eEEEeC
Q 041228 423 SPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADG---GVWNFP 499 (538)
Q Consensus 423 ~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg---~~~~lp 499 (538)
.....+||||||++++||+++| +|+|+|+|+++ ++|+||
T Consensus 175 --~~~~~~ivDTGTt~t~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~ 216 (273)
T cd05475 175 --GKGLEVVFDSGSSYTYFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIP 216 (273)
T ss_pred --CCCceEEEECCCceEEcCCccc------------------------------------cccEEEEECCCCceeEEEeC
Confidence 1246899999999999999877 58999999544 799999
Q ss_pred CCccEEEecCCCcEEEEEEecC---CCCceEecHhhhceeeC
Q 041228 500 VENYFIRLDPEDVVCLAILGTP---RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 500 ~~~yl~~~~~~~~~Claf~~~~---~~~~~IiGn~~qq~~~V 538 (538)
+++|+++.. .+..|+++.... ....||||+.|||+++|
T Consensus 217 ~~~y~~~~~-~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~ 257 (273)
T cd05475 217 PENYLIISE-KGNVCLGILNGSEIGLGNTNIIGDISMQGLMV 257 (273)
T ss_pred CCceEEEcC-CCCEEEEEecCCCcCCCceEEECceEEEeeEE
Confidence 999999765 567899987643 23579999999999985
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=8.9e-44 Score=382.72 Aligned_cols=285 Identities=19% Similarity=0.286 Sum_probs=223.0
Q ss_pred ccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCC
Q 041228 186 SLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQ 265 (538)
Q Consensus 186 ~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~ 265 (538)
.....+|+++|.||||+|++.|+|||||+++||+|..|..+.|+.++.|||++|+||+..+
T Consensus 133 d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~------------------- 193 (450)
T PTZ00013 133 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG------------------- 193 (450)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC-------------------
Confidence 3567899999999999999999999999999999999975444556899999999997653
Q ss_pred CCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC---c--cCcceeecccCCCCCh-
Q 041228 266 AENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL---F--HGAAGLLGLGRGPLSF- 339 (538)
Q Consensus 266 ~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~---f--~~~dGILGLg~~~lSl- 339 (538)
|.|.+.||+|+ +.|.++.|+|+|+ +..++ ++|+|+....+. + ..++||||||++.++.
T Consensus 194 -----~~~~i~YG~Gs-v~G~~~~Dtv~iG---------~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~ 257 (450)
T PTZ00013 194 -----TKVDITYGSGT-VKGFFSKDLVTLG---------HLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIG 257 (450)
T ss_pred -----cEEEEEECCce-EEEEEEEEEEEEC---------CEEEc-cEEEEEEeccccccceecccccceecccCCccccc
Confidence 67999999997 8999999999998 45666 689988765432 2 2579999999987653
Q ss_pred -----hhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCe
Q 041228 340 -----SSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGE 411 (538)
Q Consensus 340 -----~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~ 411 (538)
+.+| ++++. ++||+||+... ...|.|+|||+|+.++.+++.|+|+. ...||.|+|+ +.+|..
T Consensus 258 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~---~~~G~L~fGGiD~~~y~G~L~y~pv~------~~~yW~I~l~-v~~G~~ 327 (450)
T PTZ00013 258 SIDPIVVELKNQNKIDNALFTFYLPVHD---VHAGYLTIGGIEEKFYEGNITYEKLN------HDLYWQIDLD-VHFGKQ 327 (450)
T ss_pred cCCCHHHHHHhccCcCCcEEEEEecCCC---CCCCEEEECCcCccccccceEEEEcC------cCceEEEEEE-EEECce
Confidence 4455 44555 48999997532 23699999999999999999999996 3579999998 677654
Q ss_pred eeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEe
Q 041228 412 VLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFA 491 (538)
Q Consensus 412 ~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~ 491 (538)
... ...+||||||+++++|+++++++.+++ ..........+.++|+.. .+|+|+|+|
T Consensus 328 ~~~------------~~~aIlDSGTSli~lP~~~~~~i~~~l----~~~~~~~~~~y~~~C~~~------~lP~i~F~~- 384 (450)
T PTZ00013 328 TMQ------------KANVIVDSGTTTITAPSEFLNKFFANL----NVIKVPFLPFYVTTCDNK------EMPTLEFKS- 384 (450)
T ss_pred ecc------------ccceEECCCCccccCCHHHHHHHHHHh----CCeecCCCCeEEeecCCC------CCCeEEEEE-
Confidence 321 367999999999999999988876554 221111111235699863 489999999
Q ss_pred cCeEEEeCCCccEEEecC-CCcEEE-EEEecC-CCCceEecHhhhceeeC
Q 041228 492 DGGVWNFPVENYFIRLDP-EDVVCL-AILGTP-RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 492 gg~~~~lp~~~yl~~~~~-~~~~Cl-af~~~~-~~~~~IiGn~~qq~~~V 538 (538)
+|.+++|+|++|+.+... .+..|+ ++++.+ ..+.||||++|||++|+
T Consensus 385 ~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~ 434 (450)
T PTZ00013 385 ANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFT 434 (450)
T ss_pred CCEEEEECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEE
Confidence 789999999999976431 356897 576643 34689999999999985
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=6.8e-44 Score=359.49 Aligned_cols=248 Identities=51% Similarity=0.905 Sum_probs=210.1
Q ss_pred eEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCCc
Q 041228 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQT 270 (538)
Q Consensus 191 ~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~~ 270 (538)
+|+++|.||||+|++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 699999999999999999999999999987
Q ss_pred eeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-ccCcceeecccCCCCChhhHHhhhccC
Q 041228 271 CPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-FHGAAGLLGLGRGPLSFSSQLQSLYGH 349 (538)
Q Consensus 271 c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f~~~dGILGLg~~~lSl~sQl~~~~~~ 349 (538)
|.|.+.|+||+.+.|.+++|+|+|+.. ...++++.|||+....+. ...++||||||+..++++.|+...- +
T Consensus 31 ~~~~~~Y~dg~~~~G~~~~D~v~~g~~-------~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~-~ 102 (265)
T cd05476 31 CSYEYSYGDGSSTSGVLATETFTFGDS-------SVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG-N 102 (265)
T ss_pred CceEeEeCCCceeeeeEEEEEEEecCC-------CCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc-C
Confidence 138899999989999999999999821 016789999999988762 2367999999999999999995433 7
Q ss_pred ceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCCcccccCCCCCCc
Q 041228 350 SFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGG 429 (538)
Q Consensus 350 ~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~ 429 (538)
+||+||++.. .....|+|+||++|+. +.+++.|+|++.++. ...+|.|+|++|+|+++.+.+++..+.........
T Consensus 103 ~Fs~~l~~~~-~~~~~G~l~fGg~d~~-~~~~l~~~p~~~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 178 (265)
T cd05476 103 KFSYCLVPHD-DTGGSSPLILGDAADL-GGSGVVYTPLVKNPA--NPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGG 178 (265)
T ss_pred eeEEEccCCC-CCCCCCeEEECCcccc-cCCCceEeecccCCC--CCCceEeeeEEEEECCEEecCCchhcccccCCCCc
Confidence 9999998642 1234699999999988 889999999996532 35799999999999999998776655444455678
Q ss_pred EEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEEEeCCCccEEEecC
Q 041228 430 TIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDP 509 (538)
Q Consensus 430 aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~ 509 (538)
+||||||++++||+.+| |.|+|+|++|++|.|++++|+++..
T Consensus 179 ai~DTGTs~~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~- 220 (265)
T cd05476 179 TIIDSGTTLTYLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVDVG- 220 (265)
T ss_pred EEEeCCCcceEcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEECC-
Confidence 99999999999999888 8999999668999999999999755
Q ss_pred CCcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 510 EDVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 510 ~~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
.+..|+++...+..+.||||+.|||+++|
T Consensus 221 ~~~~C~~~~~~~~~~~~ilG~~fl~~~~~ 249 (265)
T cd05476 221 EGVVCLAILSSSSGGVSILGNIQQQNFLV 249 (265)
T ss_pred CCCEEEEEecCCCCCcEEEChhhcccEEE
Confidence 57799998876556789999999999985
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.1e-41 Score=345.69 Aligned_cols=252 Identities=23% Similarity=0.302 Sum_probs=204.4
Q ss_pred EEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCCce
Q 041228 192 YFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTC 271 (538)
Q Consensus 192 Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~~c 271 (538)
|+++|.||||+|++.|+|||||+++||+|..|..|.++.++.|||++|+|++... .|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~-----------------------~~ 57 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP-----------------------GA 57 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC-----------------------Cc
Confidence 8999999999999999999999999999999999988878889999999987653 36
Q ss_pred eeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecccCCCCChh--------
Q 041228 272 PYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLGRGPLSFS-------- 340 (538)
Q Consensus 272 ~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg~~~lSl~-------- 340 (538)
.|.+.|++|+.+.|.++.|+|+|+ +..++++.|||++...+. + ...+||||||++.++..
T Consensus 58 ~~~i~Y~~G~~~~G~~~~D~v~ig---------~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~ 128 (278)
T cd06097 58 TWSISYGDGSSASGIVYTDTVSIG---------GVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTF 128 (278)
T ss_pred EEEEEeCCCCeEEEEEEEEEEEEC---------CEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCH
Confidence 899999999889999999999998 467899999999987652 2 36799999999876532
Q ss_pred -hHHh-hhccCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCCc
Q 041228 341 -SQLQ-SLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDE 418 (538)
Q Consensus 341 -sQl~-~~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~~ 418 (538)
.++. ....++||+||.. ...|+|+|||+|+.++.+++.|+|+.. ...+|.|+|++|.||++.+..
T Consensus 129 ~~~l~~~~~~~~Fs~~l~~-----~~~G~l~fGg~D~~~~~g~l~~~pi~~-----~~~~w~v~l~~i~v~~~~~~~--- 195 (278)
T cd06097 129 FENALSSLDAPLFTADLRK-----AAPGFYTFGYIDESKYKGEISWTPVDN-----SSGFWQFTSTSYTVGGDAPWS--- 195 (278)
T ss_pred HHHHHHhccCceEEEEecC-----CCCcEEEEeccChHHcCCceEEEEccC-----CCcEEEEEEeeEEECCcceee---
Confidence 2331 2224699999964 125999999999999999999999984 257999999999999974321
Q ss_pred ccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEEEe
Q 041228 419 TWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNF 498 (538)
Q Consensus 419 ~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~~l 498 (538)
.....+||||||++++||.+++++|.+++... .+....+ .+..+|... +|+|+|+|
T Consensus 196 ------~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~--~~~~~~~-~~~~~C~~~-------~P~i~f~~-------- 251 (278)
T cd06097 196 ------RSGFSAIADTGTTLILLPDAIVEAYYSQVPGA--YYDSEYG-GWVFPCDTT-------LPDLSFAV-------- 251 (278)
T ss_pred ------cCCceEEeecCCchhcCCHHHHHHHHHhCcCC--cccCCCC-EEEEECCCC-------CCCEEEEE--------
Confidence 12468999999999999999998876655211 1212222 234689852 79999999
Q ss_pred CCCccEEEecCCCcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 499 PVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 499 p~~~yl~~~~~~~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
.||||+.|||++|+
T Consensus 252 --------------------------~~ilGd~fl~~~y~ 265 (278)
T cd06097 252 --------------------------FSILGDVFLKAQYV 265 (278)
T ss_pred --------------------------EEEEcchhhCceeE
Confidence 69999999999885
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4.5e-41 Score=342.49 Aligned_cols=262 Identities=21% Similarity=0.355 Sum_probs=213.6
Q ss_pred eEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCCc
Q 041228 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQT 270 (538)
Q Consensus 191 ~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~~ 270 (538)
.|+++|.||||+|++.|+|||||+++||+ .
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------~------------------------ 31 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------D------------------------ 31 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------e------------------------
Confidence 59999999999999999999999999998 1
Q ss_pred eeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCccCcceeecccCCCC-----------Ch
Q 041228 271 CPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPL-----------SF 339 (538)
Q Consensus 271 c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~~~dGILGLg~~~l-----------Sl 339 (538)
|.+.|++|+.+.|.+++|+|+|+ +..++++.|||++... ..+||||||++.+ ++
T Consensus 32 --~~~~Y~~g~~~~G~~~~D~v~~g---------~~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~ 96 (295)
T cd05474 32 --FSISYGDGTSASGTWGTDTVSIG---------GATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNF 96 (295)
T ss_pred --eEEEeccCCcEEEEEEEEEEEEC---------CeEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCH
Confidence 78899998889999999999997 4578899999999842 5799999999886 57
Q ss_pred hhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccC
Q 041228 340 SSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIP 416 (538)
Q Consensus 340 ~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~ 416 (538)
+.|| ++++. ++||+||.+.. ...|.|+|||+|..++.+++.|+|++.++......+|.|.|++|+|+++.+.++
T Consensus 97 ~~~L~~~g~i~~~~Fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~ 173 (295)
T cd05474 97 PIALKKQGLIKKNAYSLYLNDLD---ASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTT 173 (295)
T ss_pred HHHHHHCCcccceEEEEEeCCCC---CCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccc
Confidence 7887 34554 59999997542 236999999999989999999999986432112379999999999999887542
Q ss_pred CcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEE
Q 041228 417 DETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVW 496 (538)
Q Consensus 417 ~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~ 496 (538)
.. .....+||||||++++||.++|++|.++|.+.... ..+ .+..+|+... . |+|+|+| +|+++
T Consensus 174 ~~------~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~---~~~-~~~~~C~~~~-----~-p~i~f~f-~g~~~ 236 (295)
T cd05474 174 LL------SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS---DEG-LYVVDCDAKD-----D-GSLTFNF-GGATI 236 (295)
T ss_pred cc------CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC---CCc-EEEEeCCCCC-----C-CEEEEEE-CCeEE
Confidence 21 23578999999999999999999998888654432 122 3457999864 3 9999999 78999
Q ss_pred EeCCCccEEEecC---CCcEEE-EEEecCCCCceEecHhhhceeeC
Q 041228 497 NFPVENYFIRLDP---EDVVCL-AILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 497 ~lp~~~yl~~~~~---~~~~Cl-af~~~~~~~~~IiGn~~qq~~~V 538 (538)
+||+++|+++... .+..|+ +|.+... +.||||+.|||++|+
T Consensus 237 ~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~iLG~~fl~~~y~ 281 (295)
T cd05474 237 SVPLSDLVLPASTDDGGDGACYLGIQPSTS-DYNILGDTFLRSAYV 281 (295)
T ss_pred EEEHHHhEeccccCCCCCCCeEEEEEeCCC-CcEEeChHHhhcEEE
Confidence 9999999998642 357895 7877643 689999999999985
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.4e-39 Score=324.52 Aligned_cols=257 Identities=33% Similarity=0.585 Sum_probs=207.1
Q ss_pred EEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCC--CCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCC
Q 041228 192 YFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPH--YDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQ 269 (538)
Q Consensus 192 Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~--FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~ 269 (538)
|+++|.||||+|++.|+|||||+++||+|..|..|.++.... |++..|+++.. .
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~------------------------~ 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKD------------------------T 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeec------------------------C
Confidence 889999999999999999999999999999999887766555 67777666542 2
Q ss_pred ceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc--cCcceeecccCCC------CChhh
Q 041228 270 TCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF--HGAAGLLGLGRGP------LSFSS 341 (538)
Q Consensus 270 ~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f--~~~dGILGLg~~~------lSl~s 341 (538)
.|.|.+.|++|+ +.|.++.|+|+|+ +..++++.|||++...+.+ ...+||||||+.. .+++.
T Consensus 57 ~~~~~~~Y~~g~-~~g~~~~D~v~~~---------~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~ 126 (283)
T cd05471 57 GCTFSITYGDGS-VTGGLGTDTVTIG---------GLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFD 126 (283)
T ss_pred CCEEEEEECCCe-EEEEEEEeEEEEC---------CEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHH
Confidence 488999999985 8899999999998 3468899999999887633 4679999999988 78899
Q ss_pred HHhh--h-ccCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCCc
Q 041228 342 QLQS--L-YGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDE 418 (538)
Q Consensus 342 Ql~~--~-~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~~ 418 (538)
|+.. . ..++||+||.... .....|.|+|||+++.++.+++.|+|++.. ...+|.|.|++|.|+++....
T Consensus 127 ~l~~~~~i~~~~Fs~~l~~~~-~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~----~~~~~~v~l~~i~v~~~~~~~--- 198 (283)
T cd05471 127 QLKSQGLISSPVFSFYLGRDG-DGGNGGELTFGGIDPSKYTGDLTYTPVVSN----GPGYWQVPLDGISVGGKSVIS--- 198 (283)
T ss_pred HHHHCCCCCCCEEEEEEcCCC-CCCCCCEEEEcccCccccCCceEEEecCCC----CCCEEEEEeCeEEECCceeee---
Confidence 9843 3 3469999997642 223469999999999888999999999953 268999999999999975111
Q ss_pred ccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEEEe
Q 041228 419 TWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNF 498 (538)
Q Consensus 419 ~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~~l 498 (538)
......+||||||++++||+++|++|.++|.+.... ........|.... .+|.|+|+|
T Consensus 199 -----~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~-----~~p~i~f~f-------- 256 (283)
T cd05471 199 -----SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS----SDGGYGVDCSPCD-----TLPDITFTF-------- 256 (283)
T ss_pred -----cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc----cCCcEEEeCcccC-----cCCCEEEEE--------
Confidence 123578999999999999999999998888666543 1111223555544 589999999
Q ss_pred CCCccEEEecCCCcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 499 PVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 499 p~~~yl~~~~~~~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
.||||+.|||++|+
T Consensus 257 --------------------------~~ilG~~fl~~~y~ 270 (283)
T cd05471 257 --------------------------LWILGDVFLRNYYT 270 (283)
T ss_pred --------------------------EEEccHhhhhheEE
Confidence 68999999999885
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=7.4e-40 Score=335.26 Aligned_cols=284 Identities=26% Similarity=0.483 Sum_probs=231.0
Q ss_pred eEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCC-cCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCC
Q 041228 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDC-FEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQ 269 (538)
Q Consensus 191 ~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C-~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~ 269 (538)
+|+++|.||||+|++.|+|||||+.+||++..|..| .+.....|||++|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-----------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-----------------------
Confidence 699999999999999999999999999999999877 55666899999999988764
Q ss_pred ceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC---ccCcceeecccCCC-------CCh
Q 041228 270 TCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL---FHGAAGLLGLGRGP-------LSF 339 (538)
Q Consensus 270 ~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~---f~~~dGILGLg~~~-------lSl 339 (538)
+.+.+.|++|+ +.|.++.|+|+|+ +..+.++.||++....+. ....+||||||+.. .++
T Consensus 58 -~~~~~~y~~g~-~~G~~~~D~v~ig---------~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~ 126 (317)
T PF00026_consen 58 -KPFSISYGDGS-VSGNLVSDTVSIG---------GLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTF 126 (317)
T ss_dssp -EEEEEEETTEE-EEEEEEEEEEEET---------TEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SH
T ss_pred -eeeeeeccCcc-cccccccceEeee---------eccccccceeccccccccccccccccccccccCCcccccccCCcc
Confidence 57999999997 9999999999998 568889999999986553 35779999999753 345
Q ss_pred hhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccC
Q 041228 340 SSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIP 416 (538)
Q Consensus 340 ~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~ 416 (538)
+.+| ++.+. ++||++|.+.. ...|.|+|||+|+.++.+++.|+|+. ...+|.|.+++|.++++.....
T Consensus 127 ~~~l~~~g~i~~~~fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~~~~------~~~~w~v~~~~i~i~~~~~~~~ 197 (317)
T PF00026_consen 127 LDQLVQQGLISSNVFSLYLNPSD---SQNGSLTFGGYDPSKYDGDLVWVPLV------SSGYWSVPLDSISIGGESVFSS 197 (317)
T ss_dssp HHHHHHTTSSSSSEEEEEEESTT---SSEEEEEESSEEGGGEESEEEEEEBS------STTTTEEEEEEEEETTEEEEEE
T ss_pred eecchhhccccccccceeeeecc---cccchheeeccccccccCceeccCcc------cccccccccccccccccccccc
Confidence 5666 33454 58999997754 34699999999999999999999998 4588999999999999833211
Q ss_pred CcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEE
Q 041228 417 DETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVW 496 (538)
Q Consensus 417 ~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~ 496 (538)
....++|||||++++||..++++|.+++...... ..+..+|.... .+|.|+|.| ++.++
T Consensus 198 ---------~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~------~~~~~~c~~~~-----~~p~l~f~~-~~~~~ 256 (317)
T PF00026_consen 198 ---------SGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD------GVYSVPCNSTD-----SLPDLTFTF-GGVTF 256 (317)
T ss_dssp ---------EEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC------SEEEEETTGGG-----GSEEEEEEE-TTEEE
T ss_pred ---------cceeeecccccccccccchhhHHHHhhhcccccc------eeEEEeccccc-----ccceEEEee-CCEEE
Confidence 1247999999999999999999987766444332 33456998765 489999999 79999
Q ss_pred EeCCCccEEEecCC-CcEEEE-EEe---cCCCCceEecHhhhceeeC
Q 041228 497 NFPVENYFIRLDPE-DVVCLA-ILG---TPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 497 ~lp~~~yl~~~~~~-~~~Cla-f~~---~~~~~~~IiGn~~qq~~~V 538 (538)
+||+++|+.+.... ...|+. |.. ......||||..|||++|+
T Consensus 257 ~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~ 303 (317)
T PF00026_consen 257 TIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYV 303 (317)
T ss_dssp EEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEE
T ss_pred EecchHhcccccccccceeEeeeecccccccCCceEecHHHhhceEE
Confidence 99999999987632 348974 666 3456789999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=4.6e-33 Score=262.20 Aligned_cols=164 Identities=45% Similarity=0.865 Sum_probs=131.6
Q ss_pred EEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCCce
Q 041228 192 YFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTC 271 (538)
Q Consensus 192 Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~~c 271 (538)
|+++|.||||+|++.|+|||||+++|+|| .++.|||++|+||+.++|+++.|...... ...|...+..|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~--~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF--CPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSS--BTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccc--cccCCCCcCcc
Confidence 89999999999999999999999999999 34899999999999999999999976432 22344445689
Q ss_pred eeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCccCcceeecccCCCCChhhHHhhhccCce
Q 041228 272 PYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSLYGHSF 351 (538)
Q Consensus 272 ~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~~~dGILGLg~~~lSl~sQl~~~~~~~F 351 (538)
.|.+.|+|++.+.|.+++|+|+++..... ...+.++.|||++.+.|++..++||||||++++||++|+.....++|
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~----~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~F 145 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGG----SNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKF 145 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSS----SEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEE
T ss_pred cceeecCCCccccCceEEEEEEecCCCCC----CceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeE
Confidence 99999999999999999999999743211 25788999999999999999999999999999999999977677899
Q ss_pred EEEecCCCCCCCCCcceEecC
Q 041228 352 SYCLVDRNSDTNVSSKLIFGE 372 (538)
Q Consensus 352 SycL~~~~~~~~~~G~LtfGg 372 (538)
||||++ ++....|+|+||+
T Consensus 146 SyCL~~--~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 146 SYCLPS--SSPSSSGFLSFGD 164 (164)
T ss_dssp EEEB-S---SSSSEEEEEECS
T ss_pred EEECCC--CCCCCCEEEEeCc
Confidence 999998 2334579999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.91 E-value=1.3e-24 Score=203.94 Aligned_cols=139 Identities=39% Similarity=0.767 Sum_probs=113.1
Q ss_pred eEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCc--C-CCCCCceecccC
Q 041228 398 FYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYP--L-VKDFPILDPCYN 474 (538)
Q Consensus 398 ~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~--~-~~~~~~ld~C~~ 474 (538)
||+|+|++|+|||+++++++..|+. ..+.+++||||||++|+||+++|++|+++|.+++.... . ......++.||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 6999999999999999999999977 77789999999999999999999999999999998753 2 344556789999
Q ss_pred CCC----CcccccceEEEEEecCeEEEeCCCccEEEecCCCcEEEEEEec--CCCCceEecHhhhceeeC
Q 041228 475 VSG----IEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGT--PRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 475 ~s~----~~~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~~~~~Claf~~~--~~~~~~IiGn~~qq~~~V 538 (538)
.++ .....+|+|+|+|.||+.|+|++++|+++.+ .+.+|++|..+ ...+.+|||+.|||+++|
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~-~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v 148 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS-PGVFCLAFVPSDADDDGVSVIGNFQQQNYHV 148 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC-TTEEEESEEEETSTTSSSEEE-HHHCCTEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeecc-CCCEEEEEEccCCCCCCcEEECHHHhcCcEE
Confidence 998 3567899999999989999999999999987 67899999998 467789999999999975
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.1e-22 Score=177.45 Aligned_cols=105 Identities=30% Similarity=0.583 Sum_probs=92.6
Q ss_pred EEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCC-CCCCCCcccccccCCccCCCCCCCCCCCCCCCCCCcee
Q 041228 194 MDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHY-DPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCP 272 (538)
Q Consensus 194 v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~F-dPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~~c~ 272 (538)
++|.||||+|++.|+|||||+++||+|..|..|.++.++.| ||+.|++++.. .|.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~------------------------~~~ 56 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDN------------------------GCT 56 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCC------------------------CcE
Confidence 47999999999999999999999999999998887777777 99999988754 378
Q ss_pred eEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc---cCcceeecc
Q 041228 273 YFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF---HGAAGLLGL 332 (538)
Q Consensus 273 y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f---~~~dGILGL 332 (538)
|.+.|++|+ ..|.++.|+|+|+ ...++++.|||++...+.+ ...+|||||
T Consensus 57 ~~~~Y~~g~-~~g~~~~D~v~ig---------~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 57 FSITYGTGS-LSGGLSTDTVSIG---------DIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEeCCCe-EEEEEEEEEEEEC---------CEEECCEEEEEEEecCCccccccccccccCC
Confidence 999999996 7799999999997 4578899999999998764 467999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.63 E-value=0.00022 Score=59.77 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=64.9
Q ss_pred eeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCC
Q 041228 190 GEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQ 269 (538)
Q Consensus 190 ~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~ 269 (538)
+.|++++.|+. +++.++||||++.+|+.-.-...+.. ... .
T Consensus 1 ~~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~~l~~------------~~~-------------------------~ 41 (96)
T cd05483 1 GHFVVPVTING--QPVRFLLDTGASTTVISEELAERLGL------------PLT-------------------------L 41 (96)
T ss_pred CcEEEEEEECC--EEEEEEEECCCCcEEcCHHHHHHcCC------------Ccc-------------------------C
Confidence 35899999994 99999999999999996642211100 000 0
Q ss_pred ceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCccCcceeeccc
Q 041228 270 TCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLG 333 (538)
Q Consensus 270 ~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~~~dGILGLg 333 (538)
.....+.+.+|.........+.|+|+ +..++++.+........ ..+||||+.
T Consensus 42 ~~~~~~~~~~G~~~~~~~~~~~i~ig---------~~~~~~~~~~v~d~~~~---~~~gIlG~d 93 (96)
T cd05483 42 GGKVTVQTANGRVRAARVRLDSLQIG---------GITLRNVPAVVLPGDAL---GVDGLLGMD 93 (96)
T ss_pred CCcEEEEecCCCccceEEEcceEEEC---------CcEEeccEEEEeCCccc---CCceEeChH
Confidence 12366777888766677778889997 45778888776655432 579999985
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.23 E-value=0.64 Score=38.07 Aligned_cols=89 Identities=22% Similarity=0.217 Sum_probs=51.9
Q ss_pred EEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCCceee
Q 041228 194 MDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCPY 273 (538)
Q Consensus 194 v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~~c~y 273 (538)
|++.|+. +++.++||||++.+.+.-.-+.... ..+.. .....
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~------------------------------~~~~~ 42 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSLAKKLG------LKPRP------------------------------KSVPI 42 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHHHHHcC------CCCcC------------------------------CceeE
Confidence 3566775 7999999999998777543221110 00000 01123
Q ss_pred EEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCccCcceeeccc
Q 041228 274 FYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLG 333 (538)
Q Consensus 274 ~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~~~dGILGLg 333 (538)
.+.-.+|.........+.++|+ +..+.++.|-... .-...+||||+-
T Consensus 43 ~~~~~~g~~~~~~~~~~~i~ig---------~~~~~~~~~~v~~----~~~~~~~iLG~d 89 (90)
T PF13650_consen 43 SVSGAGGSVTVYRGRVDSITIG---------GITLKNVPFLVVD----LGDPIDGILGMD 89 (90)
T ss_pred EEEeCCCCEEEEEEEEEEEEEC---------CEEEEeEEEEEEC----CCCCCEEEeCCc
Confidence 4444455544455666688887 4567777766555 123568999973
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=93.90 E-value=0.38 Score=43.11 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=60.4
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAE 267 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~ 267 (538)
..|.|++++.|.. +++.++||||++.+-+...--... ..++..
T Consensus 8 ~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~~L------gl~~~~----------------------------- 50 (121)
T TIGR02281 8 GDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQRL------GLDLNR----------------------------- 50 (121)
T ss_pred CCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHHHc------CCCccc-----------------------------
Confidence 5688999999986 799999999999887744321100 011100
Q ss_pred CCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCccCcceeeccc
Q 041228 268 NQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLG 333 (538)
Q Consensus 268 ~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~~~dGILGLg 333 (538)
..-...+.=..|......+.-|.++++ +..++|+++.+..... ..+||||+.
T Consensus 51 -~~~~~~~~ta~G~~~~~~~~l~~l~iG---------~~~~~nv~~~v~~~~~----~~~~LLGm~ 102 (121)
T TIGR02281 51 -LGYTVTVSTANGQIKAARVTLDRVAIG---------GIVVNDVDAMVAEGGA----LSESLLGMS 102 (121)
T ss_pred -CCceEEEEeCCCcEEEEEEEeCEEEEC---------CEEEeCcEEEEeCCCc----CCceEcCHH
Confidence 001233444556544455688889998 5688888877664321 137999986
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=87.49 E-value=4.5 Score=36.14 Aligned_cols=32 Identities=9% Similarity=0.188 Sum_probs=26.9
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEECC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCV 221 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~ 221 (538)
....+++++.|+. +++.++||||+..+++.-.
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCHH
Confidence 3456899999997 8899999999999988554
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=86.29 E-value=0.7 Score=38.79 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=25.2
Q ss_pred EEEEEEeCCCCceeeEEEecCCCceeEECCC
Q 041228 192 YFMDVFVGTPPKHYYFILDTGSDLNWIQCVP 222 (538)
Q Consensus 192 Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~ 222 (538)
|++++.|+. +++.+++||||+.+++.-+.
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHH
Confidence 578899997 89999999999999996553
No 32
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=77.62 E-value=3.2 Score=33.52 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=29.3
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPC 223 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C 223 (538)
..+.+++.+.||. +.+.+++|||++...|...-+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 4577999999998 999999999999998876644
No 33
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=75.99 E-value=3.1 Score=35.15 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=22.8
Q ss_pred EEEEEeCCCCceeeEEEecCCCceeEECCC
Q 041228 193 FMDVFVGTPPKHYYFILDTGSDLNWIQCVP 222 (538)
Q Consensus 193 ~v~I~IGTP~q~~~li~DTGS~~tWV~c~~ 222 (538)
+++|.+.. +++.+++||||+.+-|+...
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGG
T ss_pred eEEEeECC--EEEEEEEecCCCcceecccc
Confidence 45677776 79999999999999886653
No 34
>PF13650 Asp_protease_2: Aspartyl protease
Probab=68.18 E-value=5.5 Score=32.39 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.5
Q ss_pred cEEEeccccCccCCHHHHHHH
Q 041228 429 GTIIDSGTTLSYFAEPAYQII 449 (538)
Q Consensus 429 ~aIIDSGTs~t~LP~~~y~al 449 (538)
.++||||++.+.+.+..++.+
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 599999999999998887775
No 35
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=68.16 E-value=11 Score=33.60 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=27.3
Q ss_pred cceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHH
Q 041228 396 DTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQII 449 (538)
Q Consensus 396 ~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al 449 (538)
...|+++ +.|+|+.+ .++||||++.+.++++..+.|
T Consensus 9 ~g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 4556655 56888743 589999999999998776664
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=60.39 E-value=11 Score=31.51 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=24.9
Q ss_pred eEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHH
Q 041228 405 SIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQII 449 (538)
Q Consensus 405 gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al 449 (538)
.+.|+|+.+ .+.||||++.+.+++..+..+
T Consensus 4 ~~~Ing~~i---------------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL---------------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE---------------EEEEcCCcceEEeCHHHHHHh
Confidence 367888865 489999999999999888764
No 37
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=58.10 E-value=16 Score=29.86 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=17.6
Q ss_pred cEEEeccccCccCCHHHHHHH
Q 041228 429 GTIIDSGTTLSYFAEPAYQII 449 (538)
Q Consensus 429 ~aIIDSGTs~t~LP~~~y~al 449 (538)
.++||||++.+.++....+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 589999999999998766554
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=56.87 E-value=20 Score=28.74 Aligned_cols=29 Identities=21% Similarity=0.529 Sum_probs=24.1
Q ss_pred EEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHH
Q 041228 406 IIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQII 449 (538)
Q Consensus 406 IsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al 449 (538)
+.|+|+.+ .++||||.+.+.+++...+.|
T Consensus 13 ~~I~g~~~---------------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV---------------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE---------------EEEEeCCCcceecCHHHHHHh
Confidence 56888654 499999999999999887775
No 39
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=52.41 E-value=16 Score=30.98 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEeCCCCceeeEEEecCCCceeEECC
Q 041228 195 DVFVGTPPKHYYFILDTGSDLNWIQCV 221 (538)
Q Consensus 195 ~I~IGTP~q~~~li~DTGS~~tWV~c~ 221 (538)
++.|+. |.+.+++|||.|++-+.-.
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEccc
Confidence 456664 9999999999999988654
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=42.80 E-value=25 Score=29.12 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.1
Q ss_pred EEEeCCCCceeeEEEecCCCceeEECCC
Q 041228 195 DVFVGTPPKHYYFILDTGSDLNWIQCVP 222 (538)
Q Consensus 195 ~I~IGTP~q~~~li~DTGS~~tWV~c~~ 222 (538)
.+.|.. +++.+++|||.+.+-+.-..
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHHH
Confidence 345554 88999999999999886543
No 41
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=41.47 E-value=28 Score=28.87 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=17.9
Q ss_pred cEEEeccccCccCCHHHHHHH
Q 041228 429 GTIIDSGTTLSYFAEPAYQII 449 (538)
Q Consensus 429 ~aIIDSGTs~t~LP~~~y~al 449 (538)
..++|||...+.|++...+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 489999999999998777663
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=40.87 E-value=22 Score=29.92 Aligned_cols=27 Identities=19% Similarity=0.564 Sum_probs=21.2
Q ss_pred eEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHH
Q 041228 405 SIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAY 446 (538)
Q Consensus 405 gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y 446 (538)
.|.|+|+.+ .++||||+.++.+++..+
T Consensus 9 ~v~i~g~~i---------------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI---------------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE---------------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE---------------EEEEecCCCcceeccccc
Confidence 467777754 599999999999997543
No 43
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=37.23 E-value=36 Score=30.27 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=17.9
Q ss_pred cEEEeccccCccCCHHHHHHH
Q 041228 429 GTIIDSGTTLSYFAEPAYQII 449 (538)
Q Consensus 429 ~aIIDSGTs~t~LP~~~y~al 449 (538)
.++||||++.+.+.+...+.+
T Consensus 29 ~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 29 KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEEEeCCCceEEeCHHHHHHc
Confidence 589999999999998776663
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=36.85 E-value=37 Score=32.33 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=22.1
Q ss_pred EEEEEeCCCCceeeEEEecCCCceeEECC
Q 041228 193 FMDVFVGTPPKHYYFILDTGSDLNWIQCV 221 (538)
Q Consensus 193 ~v~I~IGTP~q~~~li~DTGS~~tWV~c~ 221 (538)
+..+.++.-..++.++|||||...+|...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34455555559999999999999888654
No 45
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=32.32 E-value=43 Score=28.40 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=19.0
Q ss_pred CcEEEeccccCccCCHHHHHHH
Q 041228 428 GGTIIDSGTTLSYFAEPAYQII 449 (538)
Q Consensus 428 ~~aIIDSGTs~t~LP~~~y~al 449 (538)
-.+.+|||++++.||...|..+
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhh
Confidence 3689999999999998888774
No 46
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=31.77 E-value=2e+02 Score=30.91 Aligned_cols=124 Identities=22% Similarity=0.221 Sum_probs=0.0
Q ss_pred ccCCcccceeeeeeeccccCCeeEEEEEEeCCCCcee-----eEEEecCCCceeEECCCCCCCcCCCCCCCCCCC-CCcc
Q 041228 169 YASGVSGQLVATLESGVSLGAGEYFMDVFVGTPPKHY-----YFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKD-SSSF 242 (538)
Q Consensus 169 ~~~~~~~~~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~-----~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~-SSTy 242 (538)
+.....-.+++.+..|...-...=++.|.|=-|.... .|++||||.-+ +++.-.. ++-.
T Consensus 1 s~~~~~N~~~itV~~~~~~~~N~p~VsVtVC~PGts~CqTIdnvlVDTGS~GL---------------Ri~~sAl~~~l~ 65 (370)
T PF11925_consen 1 SPATAANTVPITVDSGVSNVINIPTVSVTVCAPGTSNCQTIDNVLVDTGSYGL---------------RIFASALPSSLA 65 (370)
T ss_pred CCCCCCceEEEEEecCCCCcccceeeEEEEeCCCCCCceeeCcEEEeccchhh---------------hHHHhhhchhhh
Q ss_pred cccccCCccCCCCCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEe----
Q 041228 243 KNISCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHW---- 318 (538)
Q Consensus 243 ~~~~C~s~~C~~~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~---- 318 (538)
..++ .......+--.|.. |++| ++=|-+.+-+|+|+ +..-.++++-.+.+
T Consensus 66 ~~Lp------~~t~~g~~laEC~~----------F~sg-ytWGsVr~AdV~ig---------ge~A~~iPiQvI~D~~~~ 119 (370)
T PF11925_consen 66 GSLP------QQTGGGAPLAECAQ----------FASG-YTWGSVRTADVTIG---------GETASSIPIQVIGDSAAP 119 (370)
T ss_pred ccCC------cccCCCcchhhhhh----------ccCc-ccccceEEEEEEEc---------CeeccccCEEEEcCCCCC
Q ss_pred -------ccCC------ccCcceeeccc
Q 041228 319 -------NRGL------FHGAAGLLGLG 333 (538)
Q Consensus 319 -------~~g~------f~~~dGILGLg 333 (538)
+.|. ..++.||||+|
T Consensus 120 ~~P~sC~~~g~~~~t~~~lgaNGILGIg 147 (370)
T PF11925_consen 120 SVPSSCSNSGASMNTVADLGANGILGIG 147 (370)
T ss_pred CCCchhhcCCCCCCCcccccCceEEeec
No 47
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=30.92 E-value=29 Score=20.77 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=8.1
Q ss_pred cchhhhHHhhhhh
Q 041228 3 FKVSLVLVLLSIS 15 (538)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (538)
+|+.+||+.|++.
T Consensus 2 Mk~vIIlvvLLli 14 (19)
T PF13956_consen 2 MKLVIILVVLLLI 14 (19)
T ss_pred ceehHHHHHHHhc
Confidence 5777776655544
No 48
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=28.20 E-value=1.4e+02 Score=29.43 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=50.0
Q ss_pred cCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCC
Q 041228 187 LGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQA 266 (538)
Q Consensus 187 ~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~ 266 (538)
-+.|-|.++..|-. |.+.+++|||-+..-+.-.... .--||.+..
T Consensus 101 ~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~------RlGid~~~l--------------------------- 145 (215)
T COG3577 101 SRDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR------RLGIDLNSL--------------------------- 145 (215)
T ss_pred cCCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH------HhCCCcccc---------------------------
Confidence 46799999999987 9999999999887666443220 012444321
Q ss_pred CCCceeeEEEeCCCCceEEEEEEEEEEEc
Q 041228 267 ENQTCPYFYWYGDSSNTTGDFALETFTVN 295 (538)
Q Consensus 267 ~~~~c~y~v~YgdGs~~~G~~~~Dtltl~ 295 (538)
..++.+.-.+|......+-.|.|.|+
T Consensus 146 ---~y~~~v~TANG~~~AA~V~Ld~v~IG 171 (215)
T COG3577 146 ---DYTITVSTANGRARAAPVTLDRVQIG 171 (215)
T ss_pred ---CCceEEEccCCccccceEEeeeEEEc
Confidence 13577778889766666788888887
No 49
>PF14851 FAM176: FAM176 family
Probab=22.78 E-value=2e+02 Score=27.02 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=8.4
Q ss_pred hHHHHhHHHHHHHHH
Q 041228 116 SESTIRDLTRIQALH 130 (538)
Q Consensus 116 ~~~l~rD~~R~~~i~ 130 (538)
+|+..|=..|=+-|+
T Consensus 119 ~e~A~rlEeRe~iir 133 (153)
T PF14851_consen 119 LERAQRLEERERIIR 133 (153)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655443
No 50
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.61 E-value=54 Score=29.73 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.5
Q ss_pred cEEEecccc-CccCCHHHHHHH
Q 041228 429 GTIIDSGTT-LSYFAEPAYQII 449 (538)
Q Consensus 429 ~aIIDSGTs-~t~LP~~~y~al 449 (538)
..+||||-+ ++.||+.+++++
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhc
Confidence 348999999 999999999885
Done!