Query 041228
Match_columns 538
No_of_seqs 251 out of 1398
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 2.4E-59 8.3E-64 499.3 27.1 341 175-538 7-384 (413)
2 3aup_A SBG7S, BG, basic 7S glo 100.0 5.8E-54 2E-58 455.8 27.9 334 177-538 10-371 (403)
3 1t6e_X Xylanase inhibitor; two 100.0 3.7E-52 1.3E-56 438.9 23.6 319 177-538 3-358 (381)
4 2apr_A Rhizopuspepsin; hydrola 100.0 2.8E-51 9.6E-56 423.2 28.1 285 187-538 12-309 (325)
5 3c9x_A Trichoderma reesei aspa 100.0 9.9E-51 3.4E-55 419.8 27.4 289 187-538 12-315 (329)
6 1oew_A Endothiapepsin; hydrola 100.0 9.5E-51 3.3E-55 419.9 26.6 288 187-538 12-314 (329)
7 1dpj_A Proteinase A; proteinas 100.0 1.5E-50 5.1E-55 418.0 28.0 293 179-538 5-314 (329)
8 1tzs_A Cathepsin E; hydrolase, 100.0 2E-50 6.8E-55 421.1 27.0 295 179-538 15-327 (351)
9 1am5_A Pepsin, acid proteinase 100.0 1.8E-50 6.3E-55 416.4 25.7 288 178-538 3-309 (324)
10 3cms_A Chymosin B; hydrolase, 100.0 2.3E-50 7.8E-55 415.8 25.7 288 179-538 6-308 (323)
11 2x0b_A Renin; hydrolase-hormon 100.0 1.9E-50 6.3E-55 426.9 24.8 294 178-538 52-368 (383)
12 1mpp_A Pepsin; hydrolase(acid 100.0 5.8E-50 2E-54 418.6 26.5 296 179-538 10-340 (361)
13 3psg_A Pepsinogen; hydrolase(a 100.0 6.2E-50 2.1E-54 420.8 26.8 287 186-538 52-355 (370)
14 4aa9_A Chymosin; hydrolase, as 100.0 2.7E-50 9.4E-55 413.9 23.0 286 186-538 7-305 (320)
15 1j71_A Candidapepsin, aspartic 100.0 4.4E-50 1.5E-54 415.5 23.9 286 177-538 3-309 (334)
16 2qzx_A Candidapepsin-5; aspart 100.0 7.1E-50 2.4E-54 415.0 24.2 290 177-538 3-316 (342)
17 1htr_B Gastricsin; aspartyl pr 100.0 5.2E-50 1.8E-54 413.9 22.7 286 187-538 9-314 (329)
18 3fv3_A SAPP1P-secreted asparti 100.0 1.6E-49 5.4E-54 411.4 25.4 287 177-538 3-314 (339)
19 2ewy_A Beta-secretase 2; BACE2 100.0 1.1E-48 3.7E-53 411.9 27.5 303 188-538 11-340 (383)
20 3k1w_A Renin; protease, altern 100.0 8.6E-49 2.9E-53 405.9 25.3 295 177-538 8-325 (341)
21 1miq_A Plasmepsin; aspartic pr 100.0 4.3E-49 1.5E-53 415.2 23.3 288 179-538 54-359 (375)
22 1yg9_A Aspartic protease BLA G 100.0 7E-49 2.4E-53 406.3 23.9 292 177-538 7-314 (330)
23 1ibq_A Aspergillopepsin; aspar 100.0 4.2E-48 1.5E-52 399.4 29.4 284 188-538 12-310 (325)
24 1izd_A Aspartic proteinase; su 100.0 3.6E-48 1.2E-52 399.8 27.0 282 188-538 13-308 (323)
25 3pvk_A Candidapepsin-2; hydrol 100.0 1.6E-48 5.3E-53 404.2 23.5 288 177-538 3-316 (342)
26 2bju_A Plasmepsin II; aspartic 100.0 3.2E-48 1.1E-52 417.7 25.9 290 178-538 129-435 (453)
27 2qp8_A Beta-secretase 1; BACE1 100.0 1.5E-48 5.3E-53 412.7 22.6 303 188-538 19-352 (395)
28 1qdm_A Prophytepsin; aspartic 100.0 6.8E-48 2.3E-52 418.1 28.1 295 187-538 49-463 (478)
29 1bxo_A Protein (penicillopepsi 100.0 4.2E-48 1.4E-52 399.1 24.1 282 188-538 13-308 (323)
30 3vf3_A Beta-secretase 1; struc 100.0 2.1E-47 7.3E-52 404.7 26.0 302 189-538 27-359 (402)
31 3lpj_A Beta-secretase 1; alzhe 100.0 2.3E-47 7.7E-52 411.4 25.1 304 188-538 72-405 (455)
32 3qvc_A Histo-aspartic protease 100.0 4.1E-46 1.4E-50 401.2 26.2 288 179-538 129-434 (451)
33 1wkr_A Polyporopepsin; hydrola 100.0 3E-45 1E-49 379.9 26.4 285 179-538 5-318 (340)
34 1b5f_A Protein (cardosin A); h 100.0 5.9E-41 2E-45 332.1 22.6 221 179-453 5-236 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 1.3E-30 4.4E-35 257.3 18.8 207 305-538 2-226 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 1.7E-21 5.9E-26 166.8 10.1 88 178-295 4-95 (97)
37 1b5f_B Protein (cardosin A); h 98.8 5.2E-09 1.8E-13 86.9 5.5 64 469-538 4-72 (87)
38 1fmb_A EIAV protease; hydrolas 72.1 3.3 0.00011 35.0 4.0 26 192-219 9-34 (104)
39 2hs1_A HIV-1 protease; ultra-h 70.2 3.8 0.00013 34.4 3.9 27 193-221 10-36 (99)
40 3liy_A Protease; hydrolase, hy 60.8 7.4 0.00025 33.5 3.9 31 193-223 12-45 (116)
41 2i1a_A DNA damage-inducible pr 60.6 6.4 0.00022 34.6 3.7 31 188-220 23-53 (148)
42 3ec0_A Protease; HIV-2, inhibi 60.6 7.3 0.00025 32.6 3.8 27 193-221 10-36 (99)
43 2hah_A Protease, retropepsin; 56.5 9 0.00031 33.0 3.7 25 193-220 16-40 (116)
44 3s8i_A Protein DDI1 homolog 1; 46.5 15 0.0005 32.8 3.6 30 190-221 23-52 (148)
45 3sqf_A Protease; folded monome 46.2 18 0.00062 31.0 4.0 29 193-223 11-39 (114)
46 2i1a_A DNA damage-inducible pr 40.1 23 0.00079 30.9 3.9 29 406-449 31-59 (148)
47 4ds7_E Spindle POLE BODY compo 36.8 20 0.00067 26.5 2.3 20 115-134 28-47 (55)
48 2rsp_A RSV protease; hydrolase 32.4 31 0.0011 30.0 3.3 21 203-223 30-50 (124)
49 3slz_A GAG-Pro-POL polyprotein 32.0 37 0.0013 29.8 3.8 28 192-221 23-50 (132)
50 3ka2_A [L-Ala51;Gly51']HIV-1 p 29.4 40 0.0014 31.8 3.8 26 192-219 9-34 (203)
51 3s8i_A Protein DDI1 homolog 1; 29.1 37 0.0013 30.1 3.4 21 429-449 37-57 (148)
52 1bxo_A Protein (penicillopepsi 25.6 55 0.0019 32.2 4.3 32 395-444 13-44 (323)
53 1izd_A Aspartic proteinase; su 23.2 63 0.0021 31.9 4.2 31 396-444 14-44 (323)
54 1mpp_A Pepsin; hydrolase(acid 22.2 77 0.0026 31.6 4.7 45 380-444 5-49 (361)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=2.4e-59 Score=499.30 Aligned_cols=341 Identities=23% Similarity=0.454 Sum_probs=278.1
Q ss_pred cceeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCC
Q 041228 175 GQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHL 254 (538)
Q Consensus 175 ~~~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~ 254 (538)
..+..|+... ..+++|+++|.||||+|+|.|+|||||+++||||.+| .+|+||+++.|.++.|..
T Consensus 7 ~~~~~pv~~d--~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~ 71 (413)
T 3vla_A 7 SALVVPVKKD--ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSL 71 (413)
T ss_dssp SEEEEEEEEC--TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHH
T ss_pred ccEEEEeeec--CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccccc
Confidence 4577898875 4789999999999999999999999999999999976 279999999999999987
Q ss_pred CCCCCC-------CCCCCCCCCceeeEEEe-CCCCceEEEEEEEEEEEcccCCCCCc--cCeeEeeeEEEEEEec--cCC
Q 041228 255 VSSPDP-------PRPCQAENQTCPYFYWY-GDSSNTTGDFALETFTVNLSTPTGKS--EFRQVENVMFGCGHWN--RGL 322 (538)
Q Consensus 255 ~~~~~~-------~~~C~~~~~~c~y~v~Y-gdGs~~~G~~~~Dtltl~~~s~~g~~--~~~~v~~~~FGc~~~~--~g~ 322 (538)
+..... ...|. ++.|.|.+.| +||+.+.|++++|+|+|+.+. |.. ....++++.|||++.+ .++
T Consensus 72 ~~~~~~~~c~s~~~~~c~--~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~--g~~~~~~~~v~~~~FGc~~~~~~~g~ 147 (413)
T 3vla_A 72 SGSIACGDCFNGPRPGCN--NNTCGVFPENPVINTATGGEVAEDVVSVESTD--GSSSGRVVTVPRFIFSCAPTSLLQNL 147 (413)
T ss_dssp TTCCEEECCSSCCBTTBC--SSEEEECCEETTTTEECCEEEEEEEEEEEEEC--SSBEEEEEEEEEEEEEEECGGGGTTS
T ss_pred cccCCCcccccCCCCCCC--CCcCcceeecCcCCceeeeEEEEEEEEecccC--CCCcccceeeCCEEEECcccccccCc
Confidence 643211 12454 2469999999 588889999999999997421 111 1357889999999986 566
Q ss_pred ccCcceeecccCCCCChhhHHhh--hccCceEEEecCCCCCCCCCcceEecCCCCCC-----CCCC-ceeEeeccCCCCC
Q 041228 323 FHGAAGLLGLGRGPLSFSSQLQS--LYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLL-----NHPN-LNFTSLVSGKENP 394 (538)
Q Consensus 323 f~~~dGILGLg~~~lSl~sQl~~--~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~-----~~g~-l~~tPl~~~~~~~ 394 (538)
+.+++||||||++.+|+++||.. .+.++|||||++. ....|+|+||+.+..+ +.++ +.||||+.++..+
T Consensus 148 ~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~---~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~ 224 (413)
T 3vla_A 148 ASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGS---TSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVST 224 (413)
T ss_dssp CTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSC---SSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCC
T ss_pred ccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCC---CCCceEEEECCCcccccccccccCCceeEeecccCCccc
Confidence 77889999999999999999944 4568999999863 2246999999987643 5677 9999999754211
Q ss_pred --------ccceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhc--CCcCCC
Q 041228 395 --------VDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVK--GYPLVK 464 (538)
Q Consensus 395 --------~~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~--~~~~~~ 464 (538)
...||+|+|++|+|||+.+.++++.|.++..+++++||||||++|+||+++|++|+++|.+++. .++...
T Consensus 225 ~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~ 304 (413)
T 3vla_A 225 SATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVA 304 (413)
T ss_dssp SSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEEC
T ss_pred cccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCC
Confidence 1379999999999999999999988887766778999999999999999999999999999885 444444
Q ss_pred CCCceecccCCCCCcc----cccceEEEEEec-CeEEEeCCCccEEEecCCCcEEEEEEecCC--CCceEecHhhhceee
Q 041228 465 DFPILDPCYNVSGIEK----MELPEFGIQFAD-GGVWNFPVENYFIRLDPEDVVCLAILGTPR--SALSIIGNYQQQNFH 537 (538)
Q Consensus 465 ~~~~ld~C~~~s~~~~----~~lP~I~f~F~g-g~~~~lp~~~yl~~~~~~~~~Claf~~~~~--~~~~IiGn~~qq~~~ 537 (538)
+...+++||+.+.... ..+|+|+|+|+| ++.|+|++++|+++.+ .+..|++|+.... ...||||++|||+++
T Consensus 305 ~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~-~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~ 383 (413)
T 3vla_A 305 SVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIN-DNVVCLGVVDGGSNLRTSIVIGGHQLEDNL 383 (413)
T ss_dssp CCTTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEE-TTEEEECEEEEESSCSSSEEECHHHHTTEE
T ss_pred CCCCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeC-CCcEEEEEEecCCCcccceeEehhhhcCeE
Confidence 4445689999875422 479999999965 4999999999999876 5678999887642 368999999999998
Q ss_pred C
Q 041228 538 I 538 (538)
Q Consensus 538 V 538 (538)
|
T Consensus 384 v 384 (413)
T 3vla_A 384 V 384 (413)
T ss_dssp E
T ss_pred E
Confidence 6
No 2
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=5.8e-54 Score=455.81 Aligned_cols=334 Identities=20% Similarity=0.372 Sum_probs=254.1
Q ss_pred eeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCC
Q 041228 177 LVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVS 256 (538)
Q Consensus 177 ~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~ 256 (538)
+..||.. ...+++|+++|.||||+|+|.|+|||||+++||+|.+| .+|+||+++.|.++.|..+.
T Consensus 10 ~~~pl~~--~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~-------------~~Sst~~~~~C~s~~C~~~~ 74 (403)
T 3aup_A 10 VVLPVQN--DGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ-------------YSSKTYQAPFCHSTQCSRAN 74 (403)
T ss_dssp EEEEEEE--CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC-------------CCCSSCBCCCTTBHHHHHTT
T ss_pred EEEeeec--CCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC-------------CCCCCCCccCCCCccccCcc
Confidence 4577774 24689999999999999999999999999999999875 37999999999999998764
Q ss_pred CC------CC-CCCCCCCCCceeeEEEeC-CCCceEEEEEEEEEEEcccCCCC--CccCeeEeeeEEEEEEecc---CCc
Q 041228 257 SP------DP-PRPCQAENQTCPYFYWYG-DSSNTTGDFALETFTVNLSTPTG--KSEFRQVENVMFGCGHWNR---GLF 323 (538)
Q Consensus 257 ~~------~~-~~~C~~~~~~c~y~v~Yg-dGs~~~G~~~~Dtltl~~~s~~g--~~~~~~v~~~~FGc~~~~~---g~f 323 (538)
.. .+ ...|.. ..|.|.+.|+ ||+.+.|++++|+|+|+...... ......++++.|||++... +.+
T Consensus 75 ~~~c~~c~~~~~s~~~~--~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~ 152 (403)
T 3aup_A 75 THQCLSCPAASRPGCHK--NTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLP 152 (403)
T ss_dssp CCCEEECSSSCBTTBCS--SEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSS
T ss_pred ccCccccCCCCCCCCCC--CcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCC
Confidence 32 11 134643 4799999998 78889999999999997421100 0001678999999999864 445
Q ss_pred cCcceeecccCCCCChhhHHhh--hccCceEEEecCCCCCCCCCcceEecCCCCCCC--C-C-----CceeEeeccCCCC
Q 041228 324 HGAAGLLGLGRGPLSFSSQLQS--LYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLN--H-P-----NLNFTSLVSGKEN 393 (538)
Q Consensus 324 ~~~dGILGLg~~~lSl~sQl~~--~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~--~-g-----~l~~tPl~~~~~~ 393 (538)
..++||||||++.+++++|++. +..++|||||++.. ...|.|+||| |+.++ . | ++.|+||+.++
T Consensus 153 ~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~---~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~-- 226 (403)
T 3aup_A 153 RNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYP---TSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL-- 226 (403)
T ss_dssp TTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCT---TSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT--
T ss_pred CCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCC---CCCeeEEECC-CchhccccccccccCceeecccccCC--
Confidence 5789999999999999999943 33569999997642 2369999999 87776 4 4 89999999642
Q ss_pred CccceEEEEEeeEEeCCeee-ccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecc
Q 041228 394 PVDTFYYLQIKSIIVGGEVL-SIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPC 472 (538)
Q Consensus 394 ~~~~~y~V~L~gIsVgG~~l-~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C 472 (538)
..||+|.|++|+|||+.+ .++...|.++..+.+++||||||++++||+++|++|+++|.++++.++.+.....++.|
T Consensus 227 --~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c 304 (403)
T 3aup_A 227 --QGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLC 304 (403)
T ss_dssp --TSCEEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCE
T ss_pred --CCcceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCce
Confidence 269999999999999999 88877776666667789999999999999999999999998887655443222223456
Q ss_pred cCCCCCcccccceEEEEEecC--eEEEeCCCccEEEecCCCcEEEEEEecCC--CCceEecHhhhceeeC
Q 041228 473 YNVSGIEKMELPEFGIQFADG--GVWNFPVENYFIRLDPEDVVCLAILGTPR--SALSIIGNYQQQNFHI 538 (538)
Q Consensus 473 ~~~s~~~~~~lP~I~f~F~gg--~~~~lp~~~yl~~~~~~~~~Claf~~~~~--~~~~IiGn~~qq~~~V 538 (538)
++-+.. ..+|+|+|+|+|+ ++|+|++++|+++.. .+.+|++|+.... ...||||++|||++||
T Consensus 305 ~~c~~~--~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~-~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yv 371 (403)
T 3aup_A 305 FNSNKI--NAYPSVDLVMDKPNGPVWRISGEDLMVQAQ-PGVTCLGVMNGGMQPRAEITLGARQLEENLV 371 (403)
T ss_dssp ECGGGC--CCCCCEEEEESSTTCCEEEECHHHHEEEC----CEEECEEECCSCCSSSEEECHHHHTTSCE
T ss_pred EECCCc--CcCCcEEEEEcCCCceEEEEcccceEEEcC-CCeEEEEEEcCCCCCCCcEEEChHHhcCeEE
Confidence 554321 1589999999665 799999999999875 4678999987653 3689999999999986
No 3
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=3.7e-52 Score=438.89 Aligned_cols=319 Identities=20% Similarity=0.424 Sum_probs=249.4
Q ss_pred eeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCC
Q 041228 177 LVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVS 256 (538)
Q Consensus 177 ~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~ 256 (538)
+.+||+. ...+++|+++|.|||| |+|||||+++||+|.+|. +|+.+.|+++.|....
T Consensus 3 ~~~pv~~--~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~----------------~~~~~~C~s~~C~~~~ 59 (381)
T 1t6e_X 3 VLAPVTK--DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ----------------PPAEIPCSSPTCLLAN 59 (381)
T ss_dssp EEEEEEE--CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC----------------CCCCCBTTSHHHHHHH
T ss_pred eEEeEEe--cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCC----------------CCCccCCCCchhcccc
Confidence 5567763 4567899999999998 999999999999998761 3667889999997643
Q ss_pred CCCCCCCCCC-------CCCce-eeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeee----EEEEEEec--cCC
Q 041228 257 SPDPPRPCQA-------ENQTC-PYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENV----MFGCGHWN--RGL 322 (538)
Q Consensus 257 ~~~~~~~C~~-------~~~~c-~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~----~FGc~~~~--~g~ 322 (538)
... ...|.. .+..| .|.+.|+||+.+.|++++|+|+|+... + ...++++ .|||++.+ .++
T Consensus 60 ~~~-~~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~--g---~~~v~~~~~~~~Fg~~~~~~~~~~ 133 (381)
T 1t6e_X 60 AYP-APGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTD--G---SKPVSKVNVGVLAACAPSKLLASL 133 (381)
T ss_dssp SSC-CTTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEES--S---SSEEEEEEEEEEEEECCGGGGTTS
T ss_pred CCC-CCCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccC--C---CccccceeeeeEeecCcccccCCC
Confidence 221 225643 23468 499999999888999999999997421 1 2356554 67999876 555
Q ss_pred ccCcceeecccCCCCChhhHHh--hhccCceEEEecCCCCCCCCCcceEecCCCCC--CCCCCceeEeeccCCCCCccce
Q 041228 323 FHGAAGLLGLGRGPLSFSSQLQ--SLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDL--LNHPNLNFTSLVSGKENPVDTF 398 (538)
Q Consensus 323 f~~~dGILGLg~~~lSl~sQl~--~~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~--~~~g~l~~tPl~~~~~~~~~~~ 398 (538)
+..++||||||++.+++++|+. .++.++|||||++. ..|+|+|||.+.. ++.+++.|+||+.++. ..+
T Consensus 134 ~~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~-----~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~---~~~ 205 (381)
T 1t6e_X 134 PRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTG-----GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGG---SPA 205 (381)
T ss_dssp CTTEEEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSS-----SCEEEEESCCSCSCHHHHTTCCEEECBCCTT---CCS
T ss_pred CCCCceEEEeCCCcchhHHHHhhhcccCceEEEEeCCC-----CCeeEEeCCcccccccccCcceeeccccCCC---Ccc
Confidence 5678999999999999999994 35678999999753 3699999998653 3678999999997532 245
Q ss_pred EEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhc-------CCcCC-CCCCcee
Q 041228 399 YYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVK-------GYPLV-KDFPILD 470 (538)
Q Consensus 399 y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~-------~~~~~-~~~~~ld 470 (538)
|+|.|++|+|||+.+.++...|. ++++||||||++++||+++|++|+++|.+++. .++.. .....++
T Consensus 206 y~v~l~~i~vg~~~~~~~~~~~~-----~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 280 (381)
T 1t6e_X 206 HYISARSIVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFG 280 (381)
T ss_dssp CEECEEEEEETTEECCCCTTCSC-----TTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCS
T ss_pred eEEEEEEEEEcCEEecCCHHHcc-----CCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCC
Confidence 77999999999999988776663 46899999999999999999999999998874 23332 2333457
Q ss_pred cccCCCCCc----ccccceEEEEEecCeEEEeCCCccEEEecCCCcEEEEEEecCC-------CCceEecHhhhceeeC
Q 041228 471 PCYNVSGIE----KMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPR-------SALSIIGNYQQQNFHI 538 (538)
Q Consensus 471 ~C~~~s~~~----~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~~~~~Claf~~~~~-------~~~~IiGn~~qq~~~V 538 (538)
+|++..... ...+|+|+|+|+||++|+||+++|+++.. .+..|++|+.... ...||||++|||++||
T Consensus 281 ~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~-~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yv 358 (381)
T 1t6e_X 281 VCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVK-QGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVL 358 (381)
T ss_dssp CEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHHHEEEEE-TTEEEESEEECCCCC------CSEEECHHHHTTEEE
T ss_pred ccCCCCCCcccccCCcCCeEEEEECCCcEEEeCCCeEEEEcC-CCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEE
Confidence 999876422 13689999999767999999999999876 4678999987643 2589999999999986
No 4
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=2.8e-51 Score=423.19 Aligned_cols=285 Identities=21% Similarity=0.307 Sum_probs=237.6
Q ss_pred cCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCC
Q 041228 187 LGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQA 266 (538)
Q Consensus 187 ~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~ 266 (538)
..+++|+++|.||||+|++.|+|||||+++||+|.+|..| ++.++.|||++|+||+..
T Consensus 12 ~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c-~~~~~~y~~~~SsT~~~~--------------------- 69 (325)
T 2apr_A 12 GNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSGQTKYDPNQSSTYQAD--------------------- 69 (325)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC-CTTSCCBCGGGCTTCEEE---------------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH-hcCCCCCCcccCCCeeeC---------------------
Confidence 5788999999999999999999999999999999999999 788899999999999864
Q ss_pred CCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCcc--CcceeecccCCCCC------
Q 041228 267 ENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFH--GAAGLLGLGRGPLS------ 338 (538)
Q Consensus 267 ~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~--~~dGILGLg~~~lS------ 338 (538)
.|.|.+.|++|+.+.|.+++|+|+|+ +..++++.|||++...+.|. ..+||||||++.++
T Consensus 70 ---~~~~~i~Yg~Gs~~~G~~~~D~v~~g---------~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~ 137 (325)
T 2apr_A 70 ---GRTWSISYGDGSSASGILAKDNVNLG---------GLLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVK 137 (325)
T ss_dssp ---EEEEEEECTTSCEEEEEEEEEEEEET---------TEEEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCC
T ss_pred ---CCEEEEEECCCCCEEEEEEEEEEEEC---------CEEECcEEEEEEeccCcccccCCCceEEEeCCcccccccCCC
Confidence 27899999999889999999999998 56899999999998766553 37999999998765
Q ss_pred -hhhHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeec
Q 041228 339 -FSSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLS 414 (538)
Q Consensus 339 -l~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~ 414 (538)
++.+| ++++ .++||+||.+... ...|.|+|||+|+.++.+++.|+|+.. ...||.|.|++|+||++ +.
T Consensus 138 ~~~~~l~~qg~i~~~~FS~~l~~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~-----~~~~~~v~l~~i~vg~~-~~ 209 (325)
T 2apr_A 138 TPMDNLISQGLISRPIFGVYLGKAKN--GGGGEYIFGGYDSTKFKGSLTTVPIDN-----SRGWWGITVDRATVGTS-TV 209 (325)
T ss_dssp CHHHHHHHTTSCSSSEEEEEECCGGG--TCCEEEEETCCCGGGBCSCCEEEECBC-----TTSSCEEEECEEEETTE-EE
T ss_pred CHHHHHHhcCCCCCceEEEEecCCCC--CCCCEEEEccCCchhccCceEEEEccC-----CCCEEEEEEeEEEECCE-ec
Confidence 44566 3335 4699999965321 236999999999999999999999974 34789999999999993 32
Q ss_pred cCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCe
Q 041228 415 IPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGG 494 (538)
Q Consensus 415 i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~ 494 (538)
. ....+||||||++++||+++|++++++|.+.+... + .+..+|+.. .+|+|+|+| +|.
T Consensus 210 --~--------~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~----g-~~~~~C~~~------~~p~i~f~f-~g~ 267 (325)
T 2apr_A 210 --A--------SSFDGILDTGTTLLILPNNIAASVARAYGASDNGD----G-TYTISCDTS------AFKPLVFSI-NGA 267 (325)
T ss_dssp --E--------CCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSS----S-CEEECSCGG------GCCCEEEEE-TTE
T ss_pred --C--------CCceEEEecCCccEECCHHHHHHHHHHHhcccCCC----C-eEEEECCCC------CCCcEEEEE-CCE
Confidence 1 24689999999999999999999999887665432 2 234589842 389999999 556
Q ss_pred EEEeCCCccEEEecCCCcEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 495 VWNFPVENYFIRLDPEDVVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 495 ~~~lp~~~yl~~~~~~~~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|+||+++|+++.. +..|++ |.... .+.||||+.|||++||
T Consensus 268 ~~~ip~~~~~~~~~--~~~C~~~i~~~~-~~~~iLG~~fl~~~y~ 309 (325)
T 2apr_A 268 SFQVSPDSLVFEEF--QGQCIAGFGYGN-WGFAIIGDTFLKNNYV 309 (325)
T ss_dssp EEEECGGGGEEEEE--TTEEEESEEEES-SSSEEECHHHHTTEEE
T ss_pred EEEECHHHEEEcCC--CCeEEEEEEcCC-CCCEEECHHHhcceEE
Confidence 99999999998764 578997 45444 5689999999999985
No 5
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=9.9e-51 Score=419.75 Aligned_cols=289 Identities=20% Similarity=0.258 Sum_probs=238.0
Q ss_pred cCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCC
Q 041228 187 LGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQA 266 (538)
Q Consensus 187 ~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~ 266 (538)
..+++|+++|.||||+|++.|+|||||+++||+|.+|..|.++.++.|||++|+||+.+.
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~-------------------- 71 (329)
T 3c9x_A 12 SADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVS-------------------- 71 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECT--------------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcC--------------------
Confidence 467889999999999999999999999999999999999988888999999999998764
Q ss_pred CCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc---cCcceeecccCCCCCh----
Q 041228 267 ENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF---HGAAGLLGLGRGPLSF---- 339 (538)
Q Consensus 267 ~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f---~~~dGILGLg~~~lSl---- 339 (538)
.|.|.+.|++|+.+.|.+++|+|+|+ +..++++.|||++...+.| ...+||||||++.++.
T Consensus 72 ---~~~~~i~Yg~Gs~~~G~~~~D~v~ig---------~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~ 139 (329)
T 3c9x_A 72 ---GASWSISYGDGSSSSGDVYTDKVTIG---------GFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPH 139 (329)
T ss_dssp ---TCBEEEECTTSCEEEEEEEEEEEEET---------TEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSS
T ss_pred ---CCeEEEEeCCCCcEEEEEEEEEEEEC---------CEEEcceEEEEEEecCccccccCCCceeEEeCcccccccCCC
Confidence 26899999999889999999999998 5689999999999877655 3679999999987664
Q ss_pred -----hhHHhhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeee
Q 041228 340 -----SSQLQSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVL 413 (538)
Q Consensus 340 -----~sQl~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l 413 (538)
..+|...+ .++||+||.+. ..|.|+|||+|+.++.+++.|+|+.. ...||.|.|++|+|||+.+
T Consensus 140 ~~~~~~~~l~~~i~~~~FS~~l~~~-----~~G~l~fGg~d~~~~~g~l~~~p~~~-----~~~~~~v~l~~i~v~~~~~ 209 (329)
T 3c9x_A 140 PQKTWFSNAASSLAEPLFTADLRHG-----QNGSYNFGYIDTSVAKGPVAYTPVDN-----SQGFWEFTASGYSVGGGKL 209 (329)
T ss_dssp CCCCHHHHHHTTSSSSEEEEECCSS-----SCEEEEESSCCGGGCSSCEEEEECBC-----TTSSCEEEECCEEETTCCC
T ss_pred CCCCHHHHHHHhcCCCEEEEEecCC-----CCcEEEEeCcChhhcccceEEEEccC-----CCceEEEEEeeEEECCEec
Confidence 34453324 56999999642 36999999999999999999999984 3478999999999999865
Q ss_pred ccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecC
Q 041228 414 SIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADG 493 (538)
Q Consensus 414 ~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg 493 (538)
. . ....+||||||++++||+++|++|.++|..+. +....+. +..+|+. .+|+|+|+| +|
T Consensus 210 ~--~--------~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~--~~~~~~~-~~~~C~~-------~~P~i~f~f-~g 268 (329)
T 3c9x_A 210 N--R--------NSIDGIADTGTTLLLLDDNVVDAYYANVQSAQ--YDNQQEG-VVFDCDE-------DLPSFSFGV-GS 268 (329)
T ss_dssp C--S--------CCEEEEECTTCCSEEECHHHHHHHHTTCTTCE--EETTTTE-EEEETTC-------CCCCEEEEE-TT
T ss_pred c--C--------CCceEEEECCCCcEeCCHHHHHHHHHhCCCcE--EcCCCCE-EEEECCC-------CCCcEEEEE-CC
Confidence 3 1 24689999999999999999999765542211 1111222 3358983 489999999 69
Q ss_pred eEEEeCCCccEEEecC-CCcEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 494 GVWNFPVENYFIRLDP-EDVVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 494 ~~~~lp~~~yl~~~~~-~~~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
++|+||+++|+++... +...|++ |......+.||||+.|||++||
T Consensus 269 ~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~ 315 (329)
T 3c9x_A 269 STITIPGDLLNLTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALV 315 (329)
T ss_dssp EEEEECGGGGEEEESSTTCSEEEESEEECTTTTSEEECHHHHTTEEE
T ss_pred EEEEECHHHeeeeccCCCCCeEEEEEEcCCCCCcEEEChHHhccEEE
Confidence 9999999999987642 2478997 6665545789999999999985
No 6
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=9.5e-51 Score=419.89 Aligned_cols=288 Identities=19% Similarity=0.233 Sum_probs=236.3
Q ss_pred cCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCC
Q 041228 187 LGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQA 266 (538)
Q Consensus 187 ~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~ 266 (538)
..+++|+++|.||||+|++.|+|||||+++||+|.+|..|.+ .++.|||++|+||+.+.
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~-~~~~y~~~~SsT~~~~~-------------------- 70 (329)
T 1oew_A 12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV-XQTIYTPSKSTTAKLLS-------------------- 70 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC--CCCBCGGGCTTCEEEE--------------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc-ccCccCCccCccceecC--------------------
Confidence 367889999999999999999999999999999999998887 77899999999999874
Q ss_pred CCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc---cCcceeecccCCCCCh----
Q 041228 267 ENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF---HGAAGLLGLGRGPLSF---- 339 (538)
Q Consensus 267 ~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f---~~~dGILGLg~~~lSl---- 339 (538)
.|.|.+.|++|+.+.|.+++|+|+|+ +..++++.|||++...+.| ...+||||||++.++.
T Consensus 71 ---~~~~~i~Yg~Gs~~~G~~~~D~v~~g---------~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~ 138 (329)
T 1oew_A 71 ---GATWSISYGDGSSSSGDVYTDTVSVG---------GLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPT 138 (329)
T ss_dssp ---EEEEEEECTTSCEEEEEEEEEEEEET---------TEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSS
T ss_pred ---CCeEEEEeCCCCcEEEEEEEEEEEEC---------CEEEeeeEEEEEEecCccccccCCCceEEEeccccccccCcC
Confidence 27899999999888999999999998 5689999999999887655 3679999999987664
Q ss_pred -----hhHHhhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeee
Q 041228 340 -----SSQLQSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVL 413 (538)
Q Consensus 340 -----~sQl~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l 413 (538)
..++...+ .++||+||.+. ..|.|+|||+|+.++.+++.|+|++. ...||.|.|++|+||++.+
T Consensus 139 ~~~~~~~~l~~~i~~~~FS~~L~~~-----~~G~l~fGg~d~~~~~g~l~~~p~~~-----~~~~~~v~l~~i~v~~~~~ 208 (329)
T 1oew_A 139 QQKTFFDNAKASLDSPVFTADLGYH-----APGTYNFGFIDTTAYTGSITYTAVST-----KQGFWEWTSTGYAVGSGTF 208 (329)
T ss_dssp CCCCHHHHHTTTSSSSEEEEECCSS-----SCEEEEESCCCTTSSSSCCEEEECBC-----TTSSCEEEEEEEEETTSCC
T ss_pred CCCCHHHHHHHhccCcEEEEEccCC-----CCeEEEEeccChHhcccceEEEEccC-----CCceEEEEEeeEEECCeec
Confidence 34553324 56999999641 36999999999999999999999984 3478999999999999765
Q ss_pred ccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecC
Q 041228 414 SIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADG 493 (538)
Q Consensus 414 ~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg 493 (538)
. . ....+||||||++++||+++|++|+++|..+. +....+. +..+|+. .+|+|+|+| ||
T Consensus 209 ~--~--------~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~--~~~~~g~-~~~~C~~-------~~P~i~f~f-gg 267 (329)
T 1oew_A 209 K--S--------TSIDGIADTGTTLLYLPATVVSAYWAQVSGAK--SSSSVGG-YVFPCSA-------TLPSFTFGV-GS 267 (329)
T ss_dssp E--E--------EEEEEEECTTCCSEEECHHHHHHHHTTSTTCE--EETTTTE-EEEETTC-------CCCCEEEEE-TT
T ss_pred c--C--------CCceEEEeCCCCCEECCHHHHHHHHHhCCCcE--EcCCCCE-EEEECCC-------CCCcEEEEE-CC
Confidence 3 1 13589999999999999999999766542211 1111222 3468983 489999999 89
Q ss_pred eEEEeCCCccEEEecC-CCcEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 494 GVWNFPVENYFIRLDP-EDVVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 494 ~~~~lp~~~yl~~~~~-~~~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
++|+||+++|+++... +...|++ |......+.||||+.|||++||
T Consensus 268 ~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~ 314 (329)
T 1oew_A 268 ARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFV 314 (329)
T ss_dssp EEEEECHHHHEEEESSTTCSEEEESEEESTTTSSEEECHHHHTTEEE
T ss_pred EEEEECHHHeeeeecCCCCCeEEEEEEeCCCCCceEEChHHhcCEEE
Confidence 9999999999987632 3478997 6655545789999999999985
No 7
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=1.5e-50 Score=417.98 Aligned_cols=293 Identities=23% Similarity=0.383 Sum_probs=238.9
Q ss_pred eeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCC
Q 041228 179 ATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSP 258 (538)
Q Consensus 179 ~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~ 258 (538)
+||. ...+++|+++|.||||+|++.|+|||||+++||+|.+|..|.+..++.|||++|+||+...
T Consensus 5 ~~l~---~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~------------ 69 (329)
T 1dpj_A 5 VPLT---NYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANG------------ 69 (329)
T ss_dssp EECE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEE------------
T ss_pred eeee---ecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECC------------
Confidence 4555 3567899999999999999999999999999999999987433445899999999998653
Q ss_pred CCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccC-Cc--cCcceeecccCC
Q 041228 259 DPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRG-LF--HGAAGLLGLGRG 335 (538)
Q Consensus 259 ~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g-~f--~~~dGILGLg~~ 335 (538)
|.|.+.|++| .+.|.+++|+|+|+ +..++++.|||++...+ .| ...+||||||++
T Consensus 70 ------------~~~~i~Yg~G-s~~G~~~~D~v~ig---------~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~ 127 (329)
T 1dpj_A 70 ------------TEFAIQYGTG-SLEGYISQDTLSIG---------DLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYD 127 (329)
T ss_dssp ------------EEEEEEETTE-EEEEEEEEEEEEET---------TEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCG
T ss_pred ------------cEEEEEECCc-eEEEEEEEEEEEEC---------CeEECCeEEEEEEecCccccccCCcceEEEeCCc
Confidence 7899999999 58999999999998 56899999999998776 23 367999999998
Q ss_pred CCChh------hHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeE
Q 041228 336 PLSFS------SQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSI 406 (538)
Q Consensus 336 ~lSl~------sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gI 406 (538)
.+++. .+| ++++ .++||+||.+........|.|+|||+|+.++.+++.|+|+. ...||.|.|++|
T Consensus 128 ~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~~~v~l~~i 201 (329)
T 1dpj_A 128 TISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVR------RKAYWEVKFEGI 201 (329)
T ss_dssp GGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECS------SBTTBEEEEEEE
T ss_pred hhhccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcC------CCceEEEEeeeE
Confidence 87754 334 3345 46999999764322223699999999999999999999998 347999999999
Q ss_pred EeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceE
Q 041228 407 IVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEF 486 (538)
Q Consensus 407 sVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I 486 (538)
+|+++.+.. .+..+||||||++++||+++|++|+++|.+. ....+ .+..+|+... .+|+|
T Consensus 202 ~v~~~~~~~----------~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~~~~g-~~~~~C~~~~-----~~P~i 261 (329)
T 1dpj_A 202 GLGDEYAEL----------ESHGAAIDTGTSLITLPSGLAEMINAEIGAK----KGWTG-QYTLDCNTRD-----NLPDL 261 (329)
T ss_dssp EETTEEEEC----------SSCEEEECTTCSCEEECHHHHHHHHHHHTCE----ECTTS-SEEECGGGGG-----GCCCE
T ss_pred EECCeEecC----------CCccEEeeCCCCcEECCHHHHHHHHHHhCCc----cCCCC-eEEEECCCCC-----cCCcE
Confidence 999988752 2468999999999999999999988777432 11222 2335898654 58999
Q ss_pred EEEEecCeEEEeCCCccEEEecCCCcEEE-EEEec----CCCCceEecHhhhceeeC
Q 041228 487 GIQFADGGVWNFPVENYFIRLDPEDVVCL-AILGT----PRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 487 ~f~F~gg~~~~lp~~~yl~~~~~~~~~Cl-af~~~----~~~~~~IiGn~~qq~~~V 538 (538)
+|+| +|++|+||+++|+++.. ..|+ +|.+. +....||||+.|||++||
T Consensus 262 ~f~f-~g~~~~i~~~~y~~~~~---~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~ 314 (329)
T 1dpj_A 262 IFNF-NGYNFTIGPYDYTLEVS---GSCISAITPMDFPEPVGPLAIVGDAFLRKYYS 314 (329)
T ss_dssp EEEE-TTEEEEECTTTSEEEET---TEEEECEEECCCCTTTCSEEEECHHHHTTEEE
T ss_pred EEEE-CCEEEEECHHHhEecCC---CEEEEEEEecccCCCCCCcEEEChHHhcceEE
Confidence 9999 78999999999999864 5899 57765 235689999999999985
No 8
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=2e-50 Score=421.06 Aligned_cols=295 Identities=22% Similarity=0.340 Sum_probs=237.5
Q ss_pred eeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCC
Q 041228 179 ATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSP 258 (538)
Q Consensus 179 ~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~ 258 (538)
.||. ...+++|+++|.||||+|++.|+|||||+++||+|.+|..+.+..++.|||++|+||+...
T Consensus 15 ~~l~---n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~------------ 79 (351)
T 1tzs_A 15 EPLI---NYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPG------------ 79 (351)
T ss_dssp CTTG---GGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCS------------
T ss_pred eece---ecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECC------------
Confidence 4555 3567899999999999999999999999999999999973333455899999999998653
Q ss_pred CCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc---cCcceeecccCC
Q 041228 259 DPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF---HGAAGLLGLGRG 335 (538)
Q Consensus 259 ~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f---~~~dGILGLg~~ 335 (538)
|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||++...+.+ ...+||||||++
T Consensus 80 ------------~~~~i~Yg~Gs-~~G~~~~D~v~ig---------~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 137 (351)
T 1tzs_A 80 ------------QSFSIQYGTGS-LSGIIGADQVSVE---------GLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYP 137 (351)
T ss_dssp ------------CEEEEESSSCE-EEEEEEEEEEEET---------TEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCG
T ss_pred ------------CEEEEEeCCCC-eEEEEEEeEEEEC---------CeEECCeEEEEEEeccccccccCCCceEEecCCc
Confidence 78999999997 8899999999998 5689999999999876642 357999999998
Q ss_pred CCCh------hhHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeE
Q 041228 336 PLSF------SSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSI 406 (538)
Q Consensus 336 ~lSl------~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gI 406 (538)
.++. ..+| ++++ .++||+||.+.... ...|.|+|||+|+.++.+++.|+|+. ...||.|.|++|
T Consensus 138 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~~~v~l~~i 210 (351)
T 1tzs_A 138 SLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEG-GAGSELIFGGYDHSHFSGSLNWVPVT------KQAYWQIALDNI 210 (351)
T ss_dssp GGSGGGCCCHHHHHHHTTCCSSSEEEEECCCCC---CTTCEEEETSCCGGGBCSCCEEEECS------EETTEEEEEEEE
T ss_pred cccccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCC-CCCCEEEECCCCHHHcCCceEEEecC------CCceEEEEeCEE
Confidence 8764 3455 3345 46999999764322 23699999999999999999999998 357999999999
Q ss_pred EeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceE
Q 041228 407 IVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEF 486 (538)
Q Consensus 407 sVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I 486 (538)
+|+|+.+.. ..+..+||||||++++||+++|++|+++|.+.. .. + .+..+|++.. .+|+|
T Consensus 211 ~v~~~~~~~---------~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~----~~-g-~~~~~C~~~~-----~~P~i 270 (351)
T 1tzs_A 211 QVGGTVMFC---------SEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAP----VD-G-EYAVECANLN-----VMPDV 270 (351)
T ss_dssp EETTEEEEC---------TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE----CS-S-SEEECGGGGG-----GSCCE
T ss_pred EECCceEEc---------CCCceEEeccCCcceeCCHHHHHHHHHHhCCcc----cC-C-eEEEeCCCCc-----cCCcE
Confidence 999987642 234689999999999999999999887764321 11 2 2346999765 58999
Q ss_pred EEEEecCeEEEeCCCccEEEecC-CCcEEE-EEEecC----CCCceEecHhhhceeeC
Q 041228 487 GIQFADGGVWNFPVENYFIRLDP-EDVVCL-AILGTP----RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 487 ~f~F~gg~~~~lp~~~yl~~~~~-~~~~Cl-af~~~~----~~~~~IiGn~~qq~~~V 538 (538)
+|+| +|++|+||+++|+++... ++..|+ +|.+.. ....||||+.|||++||
T Consensus 271 ~f~f-~g~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~ 327 (351)
T 1tzs_A 271 TFTI-NGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYS 327 (351)
T ss_dssp EEEE-TTEEEEECTTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEE
T ss_pred EEEE-CCEEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEE
Confidence 9999 899999999999997542 246899 587652 35689999999999985
No 9
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=1.8e-50 Score=416.44 Aligned_cols=288 Identities=22% Similarity=0.365 Sum_probs=238.4
Q ss_pred eeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC--CCcCCCCCCCCCCCCCcccccccCCccCCCC
Q 041228 178 VATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY--DCFEQNGPHYDPKDSSSFKNISCHDPRCHLV 255 (538)
Q Consensus 178 ~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~--~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~ 255 (538)
..||.. ..+++|+++|.||||+|++.|+|||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 3 ~~~l~n---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~--~~~~y~~~~SsT~~~~~--------- 68 (324)
T 1am5_A 3 TEQMKN---EADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACS--NHNKFKPRQSSTYVETG--------- 68 (324)
T ss_dssp EEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHH--TSCCBCGGGCTTCEEEE---------
T ss_pred eeeeec---CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccc--CCCcCCCccCCCeEeCC---------
Confidence 356663 56789999999999999999999999999999999997 465 45899999999998764
Q ss_pred CCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecc
Q 041228 256 SSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGL 332 (538)
Q Consensus 256 ~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGL 332 (538)
|.|.+.|++|+ ..|.+++|+|+|+ +..++++.|||++...+. | ...+|||||
T Consensus 69 ---------------~~~~i~Yg~Gs-~~G~~~~D~v~~g---------~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 123 (324)
T 1am5_A 69 ---------------KTVDLTYGTGG-MRGILGQDTVSVG---------GGSDPNQELGESQTEPGPFQAAAPFDGILGL 123 (324)
T ss_dssp ---------------EEEEEECSSCE-EEEEEEEEEEESS---------SSCEEEEEEEEEEECCSTTTTTCSSSEEEEC
T ss_pred ---------------cEEEEEECCCC-eEEEEEECceeEC---------CcEEcccEEEEEEecccccccCCCCceEEec
Confidence 78999999997 5999999999997 467899999999988764 3 357999999
Q ss_pred cCCCCCh------hhHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEE
Q 041228 333 GRGPLSF------SSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQI 403 (538)
Q Consensus 333 g~~~lSl------~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L 403 (538)
|++.++. +.+| ++++ .++||+||.+.. ...|.|+|||+|+.++.+++.|+|+. ...||.|.|
T Consensus 124 g~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~~~v~l 194 (324)
T 1am5_A 124 AYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGG---ANGSEVMLGGVDNSHYTGSIHWIPVT------AEKYWQVAL 194 (324)
T ss_dssp SCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTT---CSCEEEEESSCCGGGBCSCCEEEEEE------EETTEEEEE
T ss_pred CCccccccCCCchHHhHHhcCCCCCCEEEEEecCCC---CCCcEEEECccCHHHcCCceEEEecC------CCcEEEEEE
Confidence 9987764 3455 3344 469999997643 23699999999999999999999998 357999999
Q ss_pred eeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCccccc
Q 041228 404 KSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMEL 483 (538)
Q Consensus 404 ~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~l 483 (538)
++|+|+|+.+.. .+ ..+||||||++++||+++|++|+++|.+. ...+ .+..+|++.. .+
T Consensus 195 ~~i~v~~~~~~~---------~~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-----~~~g-~~~~~C~~~~-----~~ 253 (324)
T 1am5_A 195 DGITVNGQTAAC---------EG-CQAIVDTGTSKIVAPVSALANIMKDIGAS-----ENQG-EMMGNCASVQ-----SL 253 (324)
T ss_dssp CEEEETTEECCC---------CC-EEEEECTTCSSEEECTTTHHHHHHHHTCE-----ECCC-CEECCTTSSS-----SS
T ss_pred eEEEECCceeec---------cC-ceEEEecCCccEECCHHHHHHHHHHhCCc-----ccCC-cEEEeCCCcc-----cC
Confidence 999999987531 12 68999999999999999999998877543 1122 2356999865 58
Q ss_pred ceEEEEEecCeEEEeCCCccEEEecCCCcEEE-EEEecC----CCCceEecHhhhceeeC
Q 041228 484 PEFGIQFADGGVWNFPVENYFIRLDPEDVVCL-AILGTP----RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 484 P~I~f~F~gg~~~~lp~~~yl~~~~~~~~~Cl-af~~~~----~~~~~IiGn~~qq~~~V 538 (538)
|+|+|+| +|++|+||+++|+++. +..|+ +|.+.. ....||||+.|||++||
T Consensus 254 P~i~f~f-~g~~~~i~~~~y~~~~---~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~ 309 (324)
T 1am5_A 254 PDITFTI-NGVKQPLPPSAYIEGD---QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYT 309 (324)
T ss_dssp CCEEEEE-TTEEEEECHHHHEEES---SSCEEECEEECCSCCSSSCEEEECHHHHHHEEE
T ss_pred CcEEEEE-CCEEEEECHHHhcccC---CCeEEEEEEECccCCCCCCcEEEChHHhccEEE
Confidence 9999999 7899999999999985 46899 587653 35689999999999985
No 10
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=2.3e-50 Score=415.82 Aligned_cols=288 Identities=22% Similarity=0.374 Sum_probs=237.1
Q ss_pred eeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC--CCcCCCCCCCCCCCCCcccccccCCccCCCCC
Q 041228 179 ATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY--DCFEQNGPHYDPKDSSSFKNISCHDPRCHLVS 256 (538)
Q Consensus 179 ~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~--~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~ 256 (538)
.||. ...+++|+++|.||||+|++.|+|||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 6 ~~l~---n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~--~~~y~~~~SsT~~~~~---------- 70 (323)
T 3cms_A 6 VPLT---NYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKN--HQRFDPRKSSTFQNLG---------- 70 (323)
T ss_dssp EEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT--SCCBCGGGCTTCEEEE----------
T ss_pred eeeE---eccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccC--CCCCCCccCCCeEECC----------
Confidence 4566 356789999999999999999999999999999999994 5754 4899999999998764
Q ss_pred CCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeeccc
Q 041228 257 SPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLG 333 (538)
Q Consensus 257 ~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg 333 (538)
|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||++...+. | ...+||||||
T Consensus 71 --------------~~~~i~Yg~Gs-~~G~~~~D~v~ig---------~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 126 (323)
T 3cms_A 71 --------------KPLSIHYGTGS-MQGILGYDTVTVS---------NIVDIQQTVGLSTQEPGDFFTYAEFDGILGMA 126 (323)
T ss_dssp --------------EEEEEEETTEE-EEEEEEEEEEEET---------TEEEEEEEEEEEEECCSHHHHHSSCSEEEECS
T ss_pred --------------cEEEEEeCCCC-eEEEEEEEEEEEC---------CeEEeccEEEEEEecccccccccCCceEEecC
Confidence 78999999997 8999999999998 568999999999988763 3 3679999999
Q ss_pred CCCCCh------hhHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEe
Q 041228 334 RGPLSF------SSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIK 404 (538)
Q Consensus 334 ~~~lSl------~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~ 404 (538)
++.++. +.+| ++++ .++||+||.+... .|.|+|||+|+.++.+++.|+|+.. ..||.|.|+
T Consensus 127 ~~~~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~----~G~l~fGg~d~~~~~g~l~~~p~~~------~~~~~v~l~ 196 (323)
T 3cms_A 127 YPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQ----ESMLTLGAIDPSYYTGSLHWVPVTV------QQYWQFTVD 196 (323)
T ss_dssp CGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTTSS----CEEEEESCCCGGGEEEEEEEEECSS------BTTBEEEEE
T ss_pred cchhhccCCCCHHHHHHHCCCCCCCEEEEEECCCCC----CEEEEECCCChhhccCceEEEECcc------CCeEEEEEe
Confidence 987653 4455 3344 4699999976422 3999999999999999999999983 479999999
Q ss_pred eEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccc
Q 041228 405 SIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELP 484 (538)
Q Consensus 405 gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP 484 (538)
+|+|+|+.+.++ .+..+||||||++++||+++|++|+++|.+ .+...+ .+..+|++.. .+|
T Consensus 197 ~i~v~~~~~~~~---------~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~----~~~~~g-~~~~~C~~~~-----~~P 257 (323)
T 3cms_A 197 SVTISGVVVACE---------GGCQAILDTGTSKLVGPSSDILNIQQAIGA----TQNQYG-EFDIDCDNLS-----YMP 257 (323)
T ss_dssp EEEETTEEEEST---------TCEEEEECTTCCSEEECHHHHHHHHHHHTC----EEETTT-EEEECTTCTT-----TSC
T ss_pred eEEECCEEeecC---------CCcEEEEecCCccEeCCHHHHHHHHHHhCC----eecCCC-cEEEECCCCc-----cCc
Confidence 999999887642 246899999999999999999998877632 222222 2346999865 589
Q ss_pred eEEEEEecCeEEEeCCCccEEEecCCCcEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 485 EFGIQFADGGVWNFPVENYFIRLDPEDVVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 485 ~I~f~F~gg~~~~lp~~~yl~~~~~~~~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|+|+| +|++|+||+++|+++ . +..|+. |.+......||||+.|||++||
T Consensus 258 ~i~f~f-~g~~~~i~~~~y~~~-~--~~~C~~~i~~~~~~~~~iLG~~fl~~~y~ 308 (323)
T 3cms_A 258 TVVFEI-NGKMYPLTPSAYTSQ-D--QGFCTSGFQSENHSQKWILGDVFIREYYS 308 (323)
T ss_dssp CEEEEE-TTEEEEECHHHHEEE-E--TTEEEESEEEC---CCEEECHHHHTTEEE
T ss_pred eEEEEE-CCEEEEECHHHhccC-C--CCEEEEEEEeCCCCCcEEECHHHhhceEE
Confidence 999999 799999999999998 2 578995 8776445689999999999985
No 11
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=1.9e-50 Score=426.86 Aligned_cols=294 Identities=19% Similarity=0.338 Sum_probs=240.3
Q ss_pred eeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC----CCcCCCCCCCCCCCCCcccccccCCccCC
Q 041228 178 VATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY----DCFEQNGPHYDPKDSSSFKNISCHDPRCH 253 (538)
Q Consensus 178 ~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~----~C~~q~~~~FdPs~SSTy~~~~C~s~~C~ 253 (538)
..||. ...+.+|+++|.||||+|+|.|+|||||+++||+|..|. .|..+ +.|||++|+||+...
T Consensus 52 ~~~l~---n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~--~~y~~~~SsT~~~~~------- 119 (383)
T 2x0b_A 52 SVILT---NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHNG------- 119 (383)
T ss_dssp EEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTS--CCBCGGGCTTCEEEE-------
T ss_pred eEeee---ecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCC--CCCCCCCCCcEEECC-------
Confidence 35666 356789999999999999999999999999999999996 58654 899999999998764
Q ss_pred CCCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceee
Q 041228 254 LVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLL 330 (538)
Q Consensus 254 ~~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGIL 330 (538)
|.|.+.||+|+ +.|++++|+|+|+ +..++ +.|||++...|. | ...+|||
T Consensus 120 -----------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig---------~~~v~-~~Fg~a~~~~g~~f~~~~~dGIl 171 (383)
T 2x0b_A 120 -----------------TELTLRYSTGT-VSGFLSQDIITVG---------GITVT-QMFGEVTEMPALPFMLAEFDGVV 171 (383)
T ss_dssp -----------------EEEEEECSSCE-EEEEEEEEEEEET---------TEEEE-EEEEEEEECCHHHHTTCSSSEEE
T ss_pred -----------------cEEEEEcCCcc-EEEEEEeeEEEEc---------CceEE-EEEEEEEecCCcccccCCCceEe
Confidence 78999999997 8999999999998 56889 999999998763 2 3679999
Q ss_pred cccCCCCCh------hhHH--hhhc-cCceEEEecCCCCC-CCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEE
Q 041228 331 GLGRGPLSF------SSQL--QSLY-GHSFSYCLVDRNSD-TNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYY 400 (538)
Q Consensus 331 GLg~~~lSl------~sQl--~~~~-~~~FSycL~~~~~~-~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~ 400 (538)
|||++.++. ..+| ++++ .++||+||.+.... ....|.|+|||+|+.++.+++.|+|+. ...||.
T Consensus 172 GLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~------~~~~w~ 245 (383)
T 2x0b_A 172 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLI------KTGVWQ 245 (383)
T ss_dssp ECSCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBS------STTSCE
T ss_pred ccCCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcC------CCceEE
Confidence 999988774 3344 3445 46999999764322 113699999999999999999999998 347999
Q ss_pred EEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcc
Q 041228 401 LQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEK 480 (538)
Q Consensus 401 V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~ 480 (538)
|.|++|+|||+.+. +..++.+||||||++++||+++|++|.++|.+ .+ ..+. +..+|++..
T Consensus 246 v~l~~i~v~~~~~~---------~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a----~~-~~g~-~~v~C~~~~---- 306 (383)
T 2x0b_A 246 IQMKGVSVGSSTLL---------CEDGCLALVDTGASYISGSTSSIEKLMEALGA----KK-RLFD-YVVKCNEGP---- 306 (383)
T ss_dssp EEECEEEESSCCCB---------STTCEEEEECTTCSSEEECHHHHHHHHHHHTC----EE-CSSC-EEEEGGGTT----
T ss_pred EEEeEEEeCCceEE---------cCCCcEEEEcCCCceEEcCHHHHHHHHHHhCC----cc-cCCc-EEEeccccc----
Confidence 99999999998653 12357899999999999999999998777633 22 2333 346899865
Q ss_pred cccceEEEEEecCeEEEeCCCccEEEecCC-CcEEE-EEEecC----CCCceEecHhhhceeeC
Q 041228 481 MELPEFGIQFADGGVWNFPVENYFIRLDPE-DVVCL-AILGTP----RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 481 ~~lP~I~f~F~gg~~~~lp~~~yl~~~~~~-~~~Cl-af~~~~----~~~~~IiGn~~qq~~~V 538 (538)
.+|+|+|+| +|++|+||+++|+++.... +..|+ +|.+.. ....||||++|||++||
T Consensus 307 -~~P~i~f~~-~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~ 368 (383)
T 2x0b_A 307 -TLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYT 368 (383)
T ss_dssp -TCCCEEEEE-TTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEE
T ss_pred -cCceEEEEE-CCEEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEE
Confidence 589999999 7999999999999976532 46899 587652 35689999999999985
No 12
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=5.8e-50 Score=418.60 Aligned_cols=296 Identities=19% Similarity=0.306 Sum_probs=242.3
Q ss_pred eeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC---CCcCCCCCCCCCCCCCcccccccCCccCCCC
Q 041228 179 ATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY---DCFEQNGPHYDPKDSSSFKNISCHDPRCHLV 255 (538)
Q Consensus 179 ~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~---~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~ 255 (538)
.||.. ..+++|+++|.||||+|++.|+|||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 10 ~~l~~---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~--~~~y~~~~SsT~~~~~--------- 75 (361)
T 1mpp_A 10 PGLYD---FDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVG--KRFFDPSSSSTFKETD--------- 75 (361)
T ss_dssp EEEEE---TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCS--SCCBCGGGCTTCEEEE---------
T ss_pred EEeec---CCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCC--CCcCCCccCCceEecC---------
Confidence 57763 57889999999999999999999999999999999998 6764 5899999999998764
Q ss_pred CCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccC------Cc--cCcc
Q 041228 256 SSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRG------LF--HGAA 327 (538)
Q Consensus 256 ~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g------~f--~~~d 327 (538)
|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||++...+ .| ...+
T Consensus 76 ---------------~~~~i~Yg~Gs-~~G~~~~D~v~~g---------~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~ 130 (361)
T 1mpp_A 76 ---------------YNLNITYGTGG-ANGIYFRDSITVG---------GATVKQQTLAYVDNVSGPTAEQSPDSELFLD 130 (361)
T ss_dssp ---------------EEEEEECSSCE-EEEEEEEEEEEET---------TEEEEEEEEEEEEEEESGGGSSCTTCSSCCC
T ss_pred ---------------CeEEEEECCce-EEEEEEEEEEEEC---------CEEEeceEEEEEEeccCccccccccccCCCC
Confidence 78999999997 8999999999998 57899999999998866 33 3579
Q ss_pred eeecccCCCCChhh------------HH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCC
Q 041228 328 GLLGLGRGPLSFSS------------QL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKE 392 (538)
Q Consensus 328 GILGLg~~~lSl~s------------Ql--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~ 392 (538)
||||||++.+++.. +| ++++ .++||+||.+. ...|.|+|||+|+.++.+++.|+|++....
T Consensus 131 GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~----~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~ 206 (361)
T 1mpp_A 131 GIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN----DGGGQVVFGGVNNTLLGGDIQYTDVLKSRG 206 (361)
T ss_dssp EEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS----SSEEEEEESSCCGGGBSSCCEEEECEEETT
T ss_pred CEEEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCC----CCCcEEEEecCChhhcCCceEEEEcccCCC
Confidence 99999998776543 45 3334 46999999763 236999999999999999999999985321
Q ss_pred CCccceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEE-EeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceec
Q 041228 393 NPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTI-IDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDP 471 (538)
Q Consensus 393 ~~~~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aI-IDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~ 471 (538)
...||.|.|++|+|+|+.+..+ .+..+| |||||++++||+++|++|+++|.+. ++...+. +..+
T Consensus 207 --~~~~~~v~l~~i~v~~~~~~~~---------~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~---~~~~~g~-~~~~ 271 (361)
T 1mpp_A 207 --GYFFWDAPVTGVKIDGSDAVSF---------DGAQAFTIDTGTNFFIAPSSFAEKVVKAALPD---ATESQQG-YTVP 271 (361)
T ss_dssp --EEEEEEEEEEEEEETTEEEEEE---------EEEEEEEEETTCCSEEEEHHHHHHHHHHHCTT---CEEETTE-EEEE
T ss_pred --ceeEEEEEEeEEEECCeeeccC---------CCCEEEEECCCCCceeCCHHHHHHHHHHhCCc---ccCCCCc-EEEE
Confidence 2239999999999999877421 136899 9999999999999999988877443 3322332 3469
Q ss_pred ccCCCCCccccc-ceEEEEEe-c-----CeEEEeCCCccEEEecCCCcEEE-EEEecCCCCceEecHhhhceeeC
Q 041228 472 CYNVSGIEKMEL-PEFGIQFA-D-----GGVWNFPVENYFIRLDPEDVVCL-AILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 472 C~~~s~~~~~~l-P~I~f~F~-g-----g~~~~lp~~~yl~~~~~~~~~Cl-af~~~~~~~~~IiGn~~qq~~~V 538 (538)
|+... .+ |+|+|+|. + |++|+||+++|+++...++..|+ +|.+. ....||||+.|||++||
T Consensus 272 C~~~~-----~~~p~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~-~~~~~iLG~~fl~~~yv 340 (361)
T 1mpp_A 272 CSKYQ-----DSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPD-GGNQFIVGNLFLRFFVN 340 (361)
T ss_dssp HHHHT-----TCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEE-SSSCCEEEHHHHTTEEE
T ss_pred CCCcc-----cCCCcEEEEEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeC-CCCCEEEChHHhccEEE
Confidence 99754 47 99999994 4 89999999999998753356898 68775 35689999999999985
No 13
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=6.2e-50 Score=420.83 Aligned_cols=287 Identities=25% Similarity=0.411 Sum_probs=236.9
Q ss_pred ccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCC
Q 041228 186 SLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQ 265 (538)
Q Consensus 186 ~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~ 265 (538)
+..+.+|+++|.||||+|+|.|+|||||+++||+|..|..|.++.++.|||++|+||+...
T Consensus 52 n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~------------------- 112 (370)
T 3psg_A 52 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS------------------- 112 (370)
T ss_dssp GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE-------------------
T ss_pred eccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECC-------------------
Confidence 4668899999999999999999999999999999999988777788999999999998764
Q ss_pred CCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc---cCcceeecccCCCCCh---
Q 041228 266 AENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF---HGAAGLLGLGRGPLSF--- 339 (538)
Q Consensus 266 ~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f---~~~dGILGLg~~~lSl--- 339 (538)
|.|.+.||+|+ +.|.++.|+|+|+ +..++++.|||++...+.+ ...+||||||++.++.
T Consensus 113 -----~~~~i~Yg~Gs-~~G~~~~Dtv~ig---------~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~ 177 (370)
T 3psg_A 113 -----QELSITYGTGS-MTGILGYDTVQVG---------GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGA 177 (370)
T ss_dssp -----EEEEEESSSCE-EEEEEEEEEEEET---------TEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGC
T ss_pred -----cEEEEEeCCce-EEEEEEEEEEeeC---------CcccCCeEEEEEEeecccccccCCccceeccCCccccccCC
Confidence 78999999997 8999999999998 5789999999999887642 3579999999988764
Q ss_pred ---hhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeee
Q 041228 340 ---SSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVL 413 (538)
Q Consensus 340 ---~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l 413 (538)
..+| ++++. ++||+||.+.. ...|.|+|||+|+.++.+++.|+|+. ...||.|.|++|+|+|+.+
T Consensus 178 ~~~~~~l~~qg~i~~~~FS~~L~~~~---~~~G~l~fGg~D~~~y~g~l~~~pv~------~~~~w~v~l~~i~v~g~~~ 248 (370)
T 3psg_A 178 TPVFDNLWDQGLVSQDLFSVYLSSND---DSGSVVLLGGIDSSYYTGSLNWVPVS------VEGYWQITLDSITMDGETI 248 (370)
T ss_dssp CCHHHHHHHTTCSSSSEEEEEEC--------CEEEEETCCCGGGBSSCCEEEECS------EETTEEEEECEEESSSSEE
T ss_pred CCHHHHHHHCCCCCCCEEEEEEccCC---CCCeEEEEEeeChHhcCCcceeeccc------ccceeEEEEeEEEECCEEE
Confidence 3444 34454 59999997642 23699999999999999999999998 3579999999999999877
Q ss_pred ccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecC
Q 041228 414 SIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADG 493 (538)
Q Consensus 414 ~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg 493 (538)
.. ..+..+||||||++++||+++|++|.++|. ......+ .+..+|.... .+|+|+|+| ||
T Consensus 249 ~~---------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~----a~~~~~g-~~~v~C~~~~-----~lP~i~f~~-~g 308 (370)
T 3psg_A 249 AC---------SGGCQAIVDTGTSLLTGPTSAIANIQSDIG----ASENSDG-EMVISCSSID-----SLPDIVFTI-DG 308 (370)
T ss_dssp EC---------TTCEEEEECTTCCSEEEEHHHHHHHHHHTT----CEECTTC-CEECCGGGGG-----GCCCEEEEE-TT
T ss_pred ec---------CCCceEEEcCCCCcEECCHHHHHHHHHHhC----CcccCCC-cEEEECCCcc-----cCCcEEEEE-CC
Confidence 52 235789999999999999999999876653 3222223 2456998765 589999999 89
Q ss_pred eEEEeCCCccEEEecCCCcEEEE-EEecC----CCCceEecHhhhceeeC
Q 041228 494 GVWNFPVENYFIRLDPEDVVCLA-ILGTP----RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 494 ~~~~lp~~~yl~~~~~~~~~Cla-f~~~~----~~~~~IiGn~~qq~~~V 538 (538)
++|+||+++|+++ . ...|+. |.+.. .+..||||++|||++||
T Consensus 309 ~~~~l~~~~yi~~-~--~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~ 355 (370)
T 3psg_A 309 VQYPLSPSAYILQ-D--DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYT 355 (370)
T ss_dssp EEEEECHHHHEEE-C--SSCEEESEEEECCCTTSCCEEEECHHHHTTEEE
T ss_pred EEEEECHHHhccc-C--CCEEEEEEEeCCCCCCCCCcEEeChHHhcceEE
Confidence 9999999999998 3 346985 76642 23479999999999985
No 14
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=2.7e-50 Score=413.93 Aligned_cols=286 Identities=22% Similarity=0.384 Sum_probs=238.4
Q ss_pred ccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCC
Q 041228 186 SLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQ 265 (538)
Q Consensus 186 ~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~ 265 (538)
+..+.+|+++|.||||+|++.|+|||||+++||+|.+|..|.++.++.|||++|+||+...
T Consensus 7 n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~------------------- 67 (320)
T 4aa9_A 7 SYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLG------------------- 67 (320)
T ss_dssp -CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEE-------------------
T ss_pred eccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCC-------------------
Confidence 4567899999999999999999999999999999999986555566899999999998764
Q ss_pred CCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecccCCCCC----
Q 041228 266 AENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLGRGPLS---- 338 (538)
Q Consensus 266 ~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg~~~lS---- 338 (538)
|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||++...+. | ...+||||||++.++
T Consensus 68 -----~~~~i~Yg~gs-~~G~~~~D~v~ig---------~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 132 (320)
T 4aa9_A 68 -----KPLSIHYGTGS-MEGFLGYDTVTVS---------NIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYS 132 (320)
T ss_dssp -----EEEEEEETTEE-EEEEEEEEEEEET---------TEEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTC
T ss_pred -----cEEEEEECCcE-EEEEEEEEEEEEC---------CEeecCeEEEEEEEcccccccccCcccEEecCcccccccCC
Confidence 78999999997 8999999999998 578999999999988763 3 246899999997655
Q ss_pred --hhhHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeee
Q 041228 339 --FSSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVL 413 (538)
Q Consensus 339 --l~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l 413 (538)
+..+| ++++ .++||+||.+. ...|.|+|||+|+.++.+++.|+|+. ...||.|.|++|.|+|+.+
T Consensus 133 ~~~~~~l~~~g~i~~~~Fs~~l~~~----~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~w~v~l~~i~v~~~~~ 202 (320)
T 4aa9_A 133 VPVFDNMMDRHLVARDLFSVYMDRN----GQGSMLTLGAIDPSYYTGSLHWVPVT------LQQYWQFTVDSVTINGVAV 202 (320)
T ss_dssp CCHHHHHHHTTCSSSSEEEEECCSS----SSCCEEEETCCCGGGEEEEEEEEECS------SBTTBEEEECEEEETTEEE
T ss_pred CCHHHHHHhCCCCCCceEEEEeCCC----CCCeEEEEcccCHHHccCceEEEEcc------cCCceEEEEeEEEECCEEe
Confidence 44555 3345 45899999764 23699999999999999999999997 3579999999999999887
Q ss_pred ccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecC
Q 041228 414 SIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADG 493 (538)
Q Consensus 414 ~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg 493 (538)
..+ .+..+||||||++++||+++|++|.++|.+. ....+ .+..+|+... .+|+|+|+| +|
T Consensus 203 ~~~---------~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~----~~~~g-~~~~~C~~~~-----~~p~i~f~f-~g 262 (320)
T 4aa9_A 203 ACV---------GGCQAILDTGTSVLFGPSSDILKIQMAIGAT----ENRYG-EFDVNCGNLR-----SMPTVVFEI-NG 262 (320)
T ss_dssp EST---------TCEEEEECTTCSSEEEEHHHHHHHHHHTTCE----ECTTS-CEEECGGGGG-----GCCCEEEEE-TT
T ss_pred ccC---------CCcEEEEECCCCcEECCHHHHHHHHHHhCCc----ccCCC-cEEEeCCCCC-----cCceEEEEE-CC
Confidence 642 2468999999999999999999987766322 22222 3456999765 589999999 79
Q ss_pred eEEEeCCCccEEEecCCCcEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 494 GVWNFPVENYFIRLDPEDVVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 494 ~~~~lp~~~yl~~~~~~~~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
++|+||+++|+.+. +..|+. |........||||+.|||++||
T Consensus 263 ~~~~l~~~~y~~~~---~~~C~~~i~~~~~~~~~ilG~~fl~~~y~ 305 (320)
T 4aa9_A 263 RDYPLSPSAYTSKD---QGFCTSGFQGDNNSELWILGDVFIREYYS 305 (320)
T ss_dssp EEEEECHHHHEEEE---TTEEEESEEEETTCCCEEECHHHHTTEEE
T ss_pred EEEEECHHHhccCC---CCeEEEEEEcCCCCCcEEEChHHhcceEE
Confidence 99999999999763 478995 8776555789999999999985
No 15
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=4.4e-50 Score=415.51 Aligned_cols=286 Identities=21% Similarity=0.329 Sum_probs=235.1
Q ss_pred eeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECC--CCCCC-------cCCCCCCCCCCCCCccccccc
Q 041228 177 LVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCV--PCYDC-------FEQNGPHYDPKDSSSFKNISC 247 (538)
Q Consensus 177 ~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~--~C~~C-------~~q~~~~FdPs~SSTy~~~~C 247 (538)
+.+||.. +..+|+++|.||||+|++.|+|||||+++||+|. +|..| .++.++.|||++|+||+...
T Consensus 3 ~~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~- 77 (334)
T 1j71_A 3 VPTTLIN----EGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLN- 77 (334)
T ss_dssp EEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEE-
T ss_pred eeEEEec----CCcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCC-
Confidence 4467764 4688999999999999999999999999999876 67643 23456899999999998764
Q ss_pred CCccCCCCCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCccCcc
Q 041228 248 HDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAA 327 (538)
Q Consensus 248 ~s~~C~~~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~~~d 327 (538)
|.|.+.|+||+.+.|.+++|+|+|+ +..++++.|||++... ..+
T Consensus 78 -----------------------~~~~i~Yg~Gs~~~G~~~~D~v~~g---------~~~~~~~~fg~~~~~~----~~~ 121 (334)
T 1j71_A 78 -----------------------QDFSIEYGDLTSSQGSFYKDTVGFG---------GISIKNQQFADVTTTS----VDQ 121 (334)
T ss_dssp -----------------------EEEEEEBTTSCEEEEEEEEEEEEET---------TEEEEEEEEEEEEEES----SSS
T ss_pred -----------------------CceEEEECCCCEEEEEEEEEEEEEC---------CEEEccEEEEEEEecC----CCc
Confidence 7899999999888999999999998 5689999999999764 579
Q ss_pred eeecccCCCC--------ChhhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCcc
Q 041228 328 GLLGLGRGPL--------SFSSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVD 396 (538)
Q Consensus 328 GILGLg~~~l--------Sl~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~ 396 (538)
||||||++.+ +++.|| ++++. ++||+||.+.. ...|.|+|||+|+.++.+++.|+|++. .
T Consensus 122 GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~------~ 192 (334)
T 1j71_A 122 GIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSED---ASTGKIIFGGVDNAKYTGTLTALPVTS------S 192 (334)
T ss_dssp CEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTT---CSEEEEEETEEETTSEEEEEEEEECCC------S
T ss_pred cEEEEcCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCC---CCCeEEEEeeechHHccCceEEEEccC------C
Confidence 9999999865 567777 34554 69999997642 236999999999999999999999983 3
Q ss_pred ceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCC
Q 041228 397 TFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVS 476 (538)
Q Consensus 397 ~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s 476 (538)
.+|.|.|++|.|+|+.+.. +..+||||||++++||+++|++|+++|.+.+. ...+.+.+.+|+.
T Consensus 193 ~~~~v~l~~i~v~g~~~~~-----------~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~---~~~~~~~~~~C~~-- 256 (334)
T 1j71_A 193 VELRVHLGSINFDGTSVST-----------NADVVLDSGTTITYFSQSTADKFARIVGATWD---SRNEIYRLPSCDL-- 256 (334)
T ss_dssp SSCEEEEEEEEETTEEEEE-----------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEE---TTTTEEECSSSCC--
T ss_pred CeEEEEEeEEEECCEeccC-----------CccEEEeCCCCcEecCHHHHHHHHHHcCCccc---CCCceEEEEcCCC--
Confidence 5899999999999998753 25799999999999999999999888765442 1122222269974
Q ss_pred CCcccccceEEEEEecCeEEEeCCCccEEEecCCCcEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 477 GIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 477 ~~~~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~~~~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|.|+|+|.||++|+||+++|+++.. .+..|++ +... +.||||+.|||++||
T Consensus 257 ------~p~i~f~f~~g~~~~i~~~~y~~~~~-~~~~C~~~i~~~---~~~iLG~~fl~~~y~ 309 (334)
T 1j71_A 257 ------SGDAVFNFDQGVKITVPLSELILKDS-DSSICYFGISRN---DANILGDNFLRRAYI 309 (334)
T ss_dssp ------CSEEEEEESTTCEEEEEGGGGEEECS-SSSCEEESEEEC---TTCEECHHHHTTEEE
T ss_pred ------CCceEEEEcCCcEEEECHHHheeecC-CCCeeEEEEeEC---CCcEEChHhhccEEE
Confidence 69999999878999999999999865 3446986 5443 369999999999985
No 16
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=7.1e-50 Score=415.01 Aligned_cols=290 Identities=22% Similarity=0.326 Sum_probs=235.3
Q ss_pred eeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECC--CCCCC-------cCCCCCCCCCCCCCccccccc
Q 041228 177 LVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCV--PCYDC-------FEQNGPHYDPKDSSSFKNISC 247 (538)
Q Consensus 177 ~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~--~C~~C-------~~q~~~~FdPs~SSTy~~~~C 247 (538)
+.+|+.. +.++|+++|.||||+|++.|+|||||+++||+|. +|..| .++.++.|||++|+||+...
T Consensus 3 v~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~- 77 (342)
T 2qzx_A 3 VAVTLHN----EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLN- 77 (342)
T ss_dssp EEEEEEE----CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEE-
T ss_pred eeEEEec----CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCC-
Confidence 4466664 5689999999999999999999999999999866 67533 23456899999999998764
Q ss_pred CCccCCCCCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCccCcc
Q 041228 248 HDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAA 327 (538)
Q Consensus 248 ~s~~C~~~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~~~d 327 (538)
|.|.+.|+||+.+.|.+++|+|+|+ +..++++.|||++... ..+
T Consensus 78 -----------------------~~~~i~Yg~Gs~~~G~~~~D~v~~g---------~~~v~~~~fg~~~~~~----~~~ 121 (342)
T 2qzx_A 78 -----------------------TRFDIKYGDGSYAKGKLYKDTVGIG---------GVSVRDQLFANVWSTS----ARK 121 (342)
T ss_dssp -----------------------EEEEEECTTSCEEEEEEEEEEEEET---------TEEEEEEEEEEEEEEC----SSS
T ss_pred -----------------------CcEEEEeCCCCeEEEEEEEEEEEEC---------CEEecceEEEEEEecC----CCc
Confidence 7899999999888999999999998 5689999999999764 579
Q ss_pred eeecccCCCC--------ChhhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCcc
Q 041228 328 GLLGLGRGPL--------SFSSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVD 396 (538)
Q Consensus 328 GILGLg~~~l--------Sl~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~ 396 (538)
||||||++.+ +++.|| ++++. ++||+||.+.. ...|.|+|||+|+.++.+++.|+|++. .
T Consensus 122 GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~------~ 192 (342)
T 2qzx_A 122 GILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAE---ASTGQIIFGGIDKAKYSGSLVDLPITS------E 192 (342)
T ss_dssp CEEECSCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTT---CSEEEEEETEEETTSBSSCCEEEECCC------S
T ss_pred CEEEEccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCC---CCCeEEEECccchhhEecceEEEeccC------C
Confidence 9999999765 567777 34554 69999997642 236999999999999999999999983 3
Q ss_pred ceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCC
Q 041228 397 TFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVS 476 (538)
Q Consensus 397 ~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s 476 (538)
.+|.|.|++|+|+|+.+.. +..+||||||++++||+++|++|+++|.+.+. +....+..+..+|+.
T Consensus 193 ~~~~v~l~~i~v~g~~~~~-----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-~~~~~~~~~~~~C~~-- 258 (342)
T 2qzx_A 193 KKLTVGLRSVNVRGRNVDA-----------NTNVLLDSGTTISYFTRSIVRNILYAIGAQMK-FDSAGNKVYVADCKT-- 258 (342)
T ss_dssp SSCEEEEEEEEETTEEEEE-----------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEE-ECTTSCEEEEECTTC--
T ss_pred ceEEEEEeEEEECCEecCC-----------CcCEEEeCCCCCEEcCHHHHHHHHHHhCCeee-eccCCCcEEEEECCC--
Confidence 5899999999999998753 25799999999999999999999888865543 111122123458974
Q ss_pred CCcccccceEEEEEecCeEEEeCCCccEEEec----CCCcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 477 GIEKMELPEFGIQFADGGVWNFPVENYFIRLD----PEDVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 477 ~~~~~~lP~I~f~F~gg~~~~lp~~~yl~~~~----~~~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|.|+|+|.||++|+||+++|+++.. ..+..|++.+... +.||||+.|||++||
T Consensus 259 ------~p~i~f~f~~g~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~ 316 (342)
T 2qzx_A 259 ------SGTIDFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRES--EDNILGDNFLRSAYV 316 (342)
T ss_dssp ------CCEEEEEETTTEEEEEEGGGGEECCBCTTSCBCSSEEESEEEC--SSCEECHHHHTTEEE
T ss_pred ------CCcEEEEECCCcEEEEcHHHhcccccccCCCCCCccEEEEecC--CCcEeChHhhhcEEE
Confidence 69999999778999999999999742 1346799743332 369999999999985
No 17
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=5.2e-50 Score=413.92 Aligned_cols=286 Identities=23% Similarity=0.431 Sum_probs=235.8
Q ss_pred cCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCC--CcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCC
Q 041228 187 LGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYD--CFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPC 264 (538)
Q Consensus 187 ~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~--C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C 264 (538)
..+++|+++|.||||+|++.|+|||||+++||+|.+|.. |. .++.|||++|+||+...
T Consensus 9 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~--~~~~y~~~~SsT~~~~~------------------ 68 (329)
T 1htr_B 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACT--SHSRFNPSESSTYSTNG------------------ 68 (329)
T ss_dssp GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHH--TSCCBCGGGCTTCEEEE------------------
T ss_pred EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccC--CCCcCCCccCCCeEECC------------------
Confidence 467899999999999999999999999999999999975 65 45899999999998764
Q ss_pred CCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecccCCCCCh--
Q 041228 265 QAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLGRGPLSF-- 339 (538)
Q Consensus 265 ~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg~~~lSl-- 339 (538)
|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||++...+. | ...+||||||++.++.
T Consensus 69 ------~~~~i~Yg~gs-~~G~~~~D~v~~g---------~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 132 (329)
T 1htr_B 69 ------QTFSLQYGSGS-LTGFFGYDTLTVQ---------SIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDE 132 (329)
T ss_dssp ------EEEEEEETTEE-EEEEEEEEEEEET---------TEEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTT
T ss_pred ------cEEEEEeCCCC-eEEEEEeeeEEEc---------ceEECceEEEEEEEccccccccCCCceEEecCCCcccccC
Confidence 78999999997 5999999999998 578999999999987664 3 3679999999988764
Q ss_pred ----hhHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCee
Q 041228 340 ----SSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEV 412 (538)
Q Consensus 340 ----~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~ 412 (538)
+.+| ++++ .++||+||.+.... ..|.|+|||+|+.++.+++.|+|+.. ..||.|.|++|+|+|+.
T Consensus 133 ~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~------~~~~~v~l~~i~v~~~~ 204 (329)
T 1htr_B 133 ATTAMQGMVQEGALTSPVFSVYLSNQQGS--SGGAVVFGGVDSSLYTGQIYWAPVTQ------ELYWQIGIEEFLIGGQA 204 (329)
T ss_dssp CCSHHHHHHHTTCSSSSEEEEEECSSCSS--EEEEEEESSCCGGGEEEEEEEEEBCS------SSSCEEEECEEEETTEE
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEcCCCCC--CCcEEEEcccCHHHcCCceEEEECCC------CceEEEEEeEEEECCce
Confidence 4455 3344 46999999765321 36999999999999999999999983 47999999999999987
Q ss_pred eccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEec
Q 041228 413 LSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFAD 492 (538)
Q Consensus 413 l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~g 492 (538)
+.. +..+..+||||||++++||+++|++|+++|.+.. ...+ .+..+|++.. .+|+|+|+| +
T Consensus 205 ~~~--------~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~----~~~g-~~~~~C~~~~-----~~P~i~f~f-~ 265 (329)
T 1htr_B 205 SGW--------CSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQE----DEYG-QFLVNCNSIQ-----NLPSLTFII-N 265 (329)
T ss_dssp CCT--------TTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEE----CTTS-CEEECGGGGG-----GSCCEEEEE-T
T ss_pred eee--------cCCCceEEEecCCccEECCHHHHHHHHHHhCCee----cCCC-eEEEeCCCcc-----cCCcEEEEE-C
Confidence 541 1234689999999999999999999887764322 1222 2356999765 589999999 7
Q ss_pred CeEEEeCCCccEEEecCCCcEEE-EEEecC----CCC-ceEecHhhhceeeC
Q 041228 493 GGVWNFPVENYFIRLDPEDVVCL-AILGTP----RSA-LSIIGNYQQQNFHI 538 (538)
Q Consensus 493 g~~~~lp~~~yl~~~~~~~~~Cl-af~~~~----~~~-~~IiGn~~qq~~~V 538 (538)
|++|+||+++|+++.. + .|+ +|.+.. ... .||||+.|||++||
T Consensus 266 g~~~~i~~~~y~~~~~--g-~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yv 314 (329)
T 1htr_B 266 GVEFPLPPSSYILSNN--G-YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYS 314 (329)
T ss_dssp TEEEEECHHHHEEECS--S-CEEESEEEECCCCTTSSCEEEECHHHHTTEEE
T ss_pred CEEEEECHHHhcccCC--C-EEEEEEEECCCCCCCCCceEEEChHHhccEEE
Confidence 9999999999999865 3 899 577642 244 89999999999985
No 18
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=1.6e-49 Score=411.42 Aligned_cols=287 Identities=23% Similarity=0.336 Sum_probs=237.6
Q ss_pred eeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEE-----CCCCCCCcCCCCCCCCCCCCCcccccccCCcc
Q 041228 177 LVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQ-----CVPCYDCFEQNGPHYDPKDSSSFKNISCHDPR 251 (538)
Q Consensus 177 ~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~-----c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~ 251 (538)
+.+||.. ..++|+++|.||||+|++.|+|||||+++||+ |.+|..|.. ++.|||++|+||+...
T Consensus 3 i~~~l~~----~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~--~~~y~~~~SsT~~~~~----- 71 (339)
T 3fv3_A 3 ISLSLIN----EGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKS--SGTFTPSSSSSYKNLG----- 71 (339)
T ss_dssp EEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTT--TCCBCGGGCTTCEEEE-----
T ss_pred eeeEEEc----CCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCC--CCcCCCccCcceeeCC-----
Confidence 5567764 45789999999999999999999999999998 777777864 5899999999999874
Q ss_pred CCCCCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCccCcceeec
Q 041228 252 CHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLG 331 (538)
Q Consensus 252 C~~~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~~~dGILG 331 (538)
|.|.+.|++|+.+.|.+++|+|+|+ +..++++.|||++...+ .+||||
T Consensus 72 -------------------~~~~i~Yg~gs~~~G~~~~D~v~~g---------~~~v~~~~fg~~~~~~~----~~GilG 119 (339)
T 3fv3_A 72 -------------------AAFTIRYGDGSTSQGTWGKDTVTIN---------GVSITGQQIADVTQTSV----DQGILG 119 (339)
T ss_dssp -------------------EEEEEECTTSCEEEEEEEEEEEEET---------TEEEEEEEEEEEEEESS----SSCEEE
T ss_pred -------------------ceEEEEECCCceEEEEEEEEEEEEC---------CEEECceEEEEEEecCC----CceeEE
Confidence 7899999999889999999999998 57899999999998764 699999
Q ss_pred ccCCCCC----------------hhhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCC
Q 041228 332 LGRGPLS----------------FSSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKE 392 (538)
Q Consensus 332 Lg~~~lS----------------l~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~ 392 (538)
||++.++ ++.|| ++++. ++||+||.+.. ...|.|+|||+|+.++.+++.|+|+..
T Consensus 120 Lg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~--- 193 (339)
T 3fv3_A 120 IGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPS---AETGTIIFGGVDNAKYSGKLVAEQVTS--- 193 (339)
T ss_dssp CSCGGGCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTT---CSEEEEEETEEETTSBSSCCEEEEBCC---
T ss_pred ecCccccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCC---CCCeEEEEeeechHHeecceEEEeccc---
Confidence 9998754 56677 34555 59999997543 236999999999999999999999983
Q ss_pred CCccceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecc
Q 041228 393 NPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPC 472 (538)
Q Consensus 393 ~~~~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C 472 (538)
..+|.|.|++|.|+|+.+.. ...+||||||++++||+++|++|.++|.+.....+...+ .+..+|
T Consensus 194 ---~~~~~v~l~~i~v~g~~~~~-----------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~-~~~~~C 258 (339)
T 3fv3_A 194 ---SQALTISLASVNLKGSSFSF-----------GDGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQY-LYFIDC 258 (339)
T ss_dssp ---SSSCEEEEEEEEESSCEEEE-----------EEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEE-EEEECT
T ss_pred ---CccEEEEEEEEEECCEeecC-----------CccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCc-eEEEec
Confidence 35899999999999988763 257999999999999999999998888643321111222 234699
Q ss_pred cCCCCCcccccceEEEEEecCeEEEeCCCccEEEecCCCcEEE-EEEecCCCCceEecHhhhceeeC
Q 041228 473 YNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCL-AILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 473 ~~~s~~~~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~~~~~Cl-af~~~~~~~~~IiGn~~qq~~~V 538 (538)
+.. .+|+|+|+|++|++|+||+++|+++.. ...|+ +|.+ .+.||||+.|||++||
T Consensus 259 ~~~------~~p~i~f~f~~g~~~~v~~~~~~~~~~--~~~C~~~i~~---~~~~ilG~~fl~~~y~ 314 (339)
T 3fv3_A 259 NTD------TSGTTVFNFGNGAKITVPNTEYVYQNG--DGTCLWGIQP---SDDTILGDNFLRHAYL 314 (339)
T ss_dssp TCC------CCSEEEEEETTSCEEEEEGGGGEEECS--SSCEEESEEE---CSSCEECHHHHTTEEE
T ss_pred CCC------CCCcEEEEECCCCEEEECHHHheeeCC--CCeEEEEEEe---CCcEEeChHHHhCEEE
Confidence 972 489999999768999999999999864 46795 6776 3579999999999985
No 19
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-48 Score=411.88 Aligned_cols=303 Identities=19% Similarity=0.274 Sum_probs=236.7
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAE 267 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~ 267 (538)
....|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+||+...
T Consensus 11 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~----~~~f~~~~SsT~~~~~--------------------- 65 (383)
T 2ewy_A 11 SGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYI----DTYFDTERSSTYRSKG--------------------- 65 (383)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTB----SCCCCGGGCTTCEEEE---------------------
T ss_pred CCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCcc----ccCcccccCccceeCC---------------------
Confidence 345799999999999999999999999999999999766 3689999999998774
Q ss_pred CCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEe-eeEEEEEEeccCCcc---CcceeecccCCCCCh----
Q 041228 268 NQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVE-NVMFGCGHWNRGLFH---GAAGLLGLGRGPLSF---- 339 (538)
Q Consensus 268 ~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~-~~~FGc~~~~~g~f~---~~dGILGLg~~~lSl---- 339 (538)
|.|.+.|++|+ +.|.+++|+|+|+. ...+. .+.|+|.....+.|. ..+||||||++.++.
T Consensus 66 ---~~~~i~Yg~Gs-~~G~~~~Dtv~i~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 133 (383)
T 2ewy_A 66 ---FDVTVKYTQGS-WTGFVGEDLVTIPK--------GFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSS 133 (383)
T ss_dssp ---EEEEEECSSCE-EEEEEEEEEEEETT--------TEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTT
T ss_pred ---ceEEEEECCcE-EEEEEEEEEEEECC--------CccceeEEEEEEEEeecceeeccCcCceEEecCchhccccccc
Confidence 78999999997 68999999999973 12222 477899887776663 569999999987654
Q ss_pred ----hhHH--hhhccCceEEEecCC----CCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeC
Q 041228 340 ----SSQL--QSLYGHSFSYCLVDR----NSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVG 409 (538)
Q Consensus 340 ----~sQl--~~~~~~~FSycL~~~----~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVg 409 (538)
..+| +..+.++||+||... +......|.|+|||+|+.++.+++.|+|++. ..||.|.|++|+||
T Consensus 134 ~~~~~~~l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~------~~~~~v~l~~i~v~ 207 (383)
T 2ewy_A 134 LETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE------EWYYQIEILKLEIG 207 (383)
T ss_dssp SCCHHHHHHHHHTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSS------BTTBBCCEEEEEET
T ss_pred ccCHHHHHHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCC------CceEEEEEEEEEEC
Confidence 2344 344567999998531 1122346999999999999999999999983 47999999999999
Q ss_pred CeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCC--CceecccCCCCCcccccceEE
Q 041228 410 GEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDF--PILDPCYNVSGIEKMELPEFG 487 (538)
Q Consensus 410 G~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~--~~ld~C~~~s~~~~~~lP~I~ 487 (538)
|+.+.++...|. ...+||||||++++||+++|++|+++|.+.........++ ..+.+|++........+|+|+
T Consensus 208 g~~~~~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~ 282 (383)
T 2ewy_A 208 GQSLNLDCREYN-----ADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKIS 282 (383)
T ss_dssp TEECCCCTTTTT-----SSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSSCCCHHHHHTSEEEEECSSSCGGGGSCCEE
T ss_pred CEEccccccccC-----CccEEEEcCCccccCCHHHHHHHHHHHhhhcccccCccccccccccccccCCcccHhhCCcEE
Confidence 999887665542 4689999999999999999999999998765421111111 235799987654445689999
Q ss_pred EEEecC-----eEEEeCCCccEEEecC--CCcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 488 IQFADG-----GVWNFPVENYFIRLDP--EDVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 488 f~F~gg-----~~~~lp~~~yl~~~~~--~~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
|+|+|+ .+|+||+++|+++... .+..|++|.-.+....||||+.|||++||
T Consensus 283 f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~~~~~ILG~~fl~~~yv 340 (383)
T 2ewy_A 283 IYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYV 340 (383)
T ss_dssp EEEECSSTTEEEEEEECHHHHEEEECCCTTCSEEEEESEEEESSCEEECHHHHTTEEE
T ss_pred EEECCCCCCceEEEEEChHHheeecccCCCCceeEEEEecCCCCcEEEChHHhCCeeE
Confidence 999654 4899999999998742 35689875222224579999999999985
No 20
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=8.6e-49 Score=405.93 Aligned_cols=295 Identities=20% Similarity=0.359 Sum_probs=240.5
Q ss_pred eeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC----CCcCCCCCCCCCCCCCcccccccCCccC
Q 041228 177 LVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY----DCFEQNGPHYDPKDSSSFKNISCHDPRC 252 (538)
Q Consensus 177 ~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~----~C~~q~~~~FdPs~SSTy~~~~C~s~~C 252 (538)
+..||.. ..+.+|+++|.||||+|++.|+|||||+++||+|..|. .|. .++.|||++|+||+...
T Consensus 8 ~~~~l~n---~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~--~~~~y~~~~SsT~~~~~------ 76 (341)
T 3k1w_A 8 SSVILTN---YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV--YHKLFDASDSSSYKHNG------ 76 (341)
T ss_dssp EEEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHH--TSCCBCGGGCTTCEEEE------
T ss_pred ccccceE---ccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCccc--CCCCCCCCcCcCeeECC------
Confidence 4567774 56789999999999999999999999999999999997 565 45899999999998653
Q ss_pred CCCCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCccee
Q 041228 253 HLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGL 329 (538)
Q Consensus 253 ~~~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGI 329 (538)
|.|.+.|++|+ +.|.+++|+|+|+ +..+ ++.|||++...+. | ...+||
T Consensus 77 ------------------~~~~i~Yg~gs-~~G~~~~D~v~ig---------~~~v-~~~fg~~~~~~~~~~~~~~~~Gi 127 (341)
T 3k1w_A 77 ------------------TELTLRYSTGT-VSGFLSQDIITVG---------GITV-TQMFGEVTEMPALPFMLAEFDGV 127 (341)
T ss_dssp ------------------EEEEEEETTEE-EEEEEEEEEEEET---------TEEE-EEEEEEEEECCHHHHTTCSSSEE
T ss_pred ------------------CEEEEEECCcE-EEEEEEEEEEEEC---------Ccee-eEEEEEEEEccccccccCCcceE
Confidence 78999999997 8999999999998 5678 9999999988764 3 356999
Q ss_pred ecccCCCCC------hhhHH--hhhc-cCceEEEecCCCC-CCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceE
Q 041228 330 LGLGRGPLS------FSSQL--QSLY-GHSFSYCLVDRNS-DTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFY 399 (538)
Q Consensus 330 LGLg~~~lS------l~sQl--~~~~-~~~FSycL~~~~~-~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y 399 (538)
||||++.++ ++.+| ++++ .++||+||.+... .....|.|+|||+|+.++.+++.|+|+. ...||
T Consensus 128 lGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~w 201 (341)
T 3k1w_A 128 VGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLI------KTGVW 201 (341)
T ss_dssp EECSCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECS------STTSC
T ss_pred EECCchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecC------CCCEE
Confidence 999998776 45555 3445 4699999976431 1123699999999999999999999998 35799
Q ss_pred EEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCc
Q 041228 400 YLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIE 479 (538)
Q Consensus 400 ~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~ 479 (538)
.|.|++|.|+++.+..+ .+..+||||||++++||+++|++|.++|.+.. ...+ +..+|....
T Consensus 202 ~v~l~~i~v~~~~~~~~---------~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~----~~~g--~~~~C~~~~--- 263 (341)
T 3k1w_A 202 QIQMKGVSVGSSTLLCE---------DGCLALVDTGASYISGSTSSIEKLMEALGAKK----RLFD--YVVKCNEGP--- 263 (341)
T ss_dssp EEEECCEEETTEEEECT---------TCEEEEECTTCSSEEECHHHHHHHHHHHTCEE----CSSC--EEEEGGGGG---
T ss_pred EEEEeEEEECCEEeecC---------CCCEEEEECCCChhcCCHHHHHHHHHHcCCee----cCCC--eEEeCCCCC---
Confidence 99999999999875432 24689999999999999999999887774332 2223 456898754
Q ss_pred ccccceEEEEEecCeEEEeCCCccEEEecC-CCcEEE-EEEec----CCCCceEecHhhhceeeC
Q 041228 480 KMELPEFGIQFADGGVWNFPVENYFIRLDP-EDVVCL-AILGT----PRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 480 ~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~-~~~~Cl-af~~~----~~~~~~IiGn~~qq~~~V 538 (538)
.+|+|+|+| +|++|+||+++|+++... ++..|+ +|... .....||||+.|||++||
T Consensus 264 --~~p~i~f~f-~g~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~ 325 (341)
T 3k1w_A 264 --TLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYT 325 (341)
T ss_dssp --GCCCEEEEE-TTEEEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEE
T ss_pred --cCCcEEEEE-CCEEEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEE
Confidence 589999999 799999999999987643 367899 47663 235689999999999985
No 21
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=4.3e-49 Score=415.16 Aligned_cols=288 Identities=20% Similarity=0.306 Sum_probs=237.1
Q ss_pred eeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCC
Q 041228 179 ATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSP 258 (538)
Q Consensus 179 ~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~ 258 (538)
.||. ...+++|+++|.||||+|++.|+|||||+++||+|.+|..+.|+.++.|||++|+||+...
T Consensus 54 ~pl~---~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~------------ 118 (375)
T 1miq_A 54 IELD---DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDG------------ 118 (375)
T ss_dssp CCGG---GTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEE------------
T ss_pred EEcc---cCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECC------------
Confidence 4555 3567899999999999999999999999999999999974333446899999999998764
Q ss_pred CCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEe----ccCCc--cCcceeecc
Q 041228 259 DPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHW----NRGLF--HGAAGLLGL 332 (538)
Q Consensus 259 ~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~----~~g~f--~~~dGILGL 332 (538)
|.|.+.|++|+ +.|.++.|+|+|+ +..+++ .|||++. +. .| ...+|||||
T Consensus 119 ------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig---------~~~v~~-~Fg~~~~~~~~~~-~f~~~~~dGilGL 174 (375)
T 1miq_A 119 ------------TKVDITYGSGT-VKGFFSKDLVTLG---------HLSMPY-KFIEVTDTDDLEP-IYSSVEFDGILGL 174 (375)
T ss_dssp ------------EEEEEEETTEE-EEEEEEEEEEEET---------TEEEEE-EEEEEEECGGGTT-HHHHSCCCEEEEC
T ss_pred ------------cEEEEEeCCCe-EEEEEEEEEEEEc---------CceECc-EEEEEEecccccc-ccccCCCceEEeC
Confidence 78999999997 8999999999998 568899 9999998 54 44 367999999
Q ss_pred cCCCCCh------hhHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEE
Q 041228 333 GRGPLSF------SSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQI 403 (538)
Q Consensus 333 g~~~lSl------~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L 403 (538)
|++.++. +.+| ++++ .++||+||.+.. ...|.|+|||+|+.++.+++.|+|+. ...||.|.|
T Consensus 175 g~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~w~v~l 245 (375)
T 1miq_A 175 GWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD---VHAGYLTIGGIEEKFYEGNITYEKLN------HDLYWQIDL 245 (375)
T ss_dssp SSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTC---TTEEEEEESSCCGGGEEEEEEEEEBS------SSSSSEEEE
T ss_pred CCCcccccCCCCHHHHHHhccCcCCCEEEEEecCCC---CCCeEEEEcccCHHHcCCceEEEecC------CCceEEEEE
Confidence 9988764 3455 3445 469999997642 24699999999999999999999997 347999999
Q ss_pred eeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCccccc
Q 041228 404 KSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMEL 483 (538)
Q Consensus 404 ~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~l 483 (538)
+ |+|||+.+ . +..+||||||++++||+++|++|+++|.+. ++...+. ++.+|+. . .+
T Consensus 246 ~-i~v~g~~~----~--------~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~~~g~-~~~~C~~-~-----~~ 302 (375)
T 1miq_A 246 D-VHFGKQTM----E--------KANVIVDSGTTTITAPSEFLNKFFANLNVI---KVPFLPF-YVTTCDN-K-----EM 302 (375)
T ss_dssp E-EEETTEEE----E--------EEEEEECTTBSSEEECHHHHHHHHHHHTCE---ECTTSSC-EEEETTC-T-----TC
T ss_pred E-EEECCEEc----c--------cceEEecCCCccEEcCHHHHHHHHHHhCCc---ccCCCCe-EEEECCC-C-----CC
Confidence 9 99999876 1 368999999999999999999988777432 2222332 4569997 3 58
Q ss_pred ceEEEEEecCeEEEeCCCccEEEecC-CCcEEE-EEEecCC-CCceEecHhhhceeeC
Q 041228 484 PEFGIQFADGGVWNFPVENYFIRLDP-EDVVCL-AILGTPR-SALSIIGNYQQQNFHI 538 (538)
Q Consensus 484 P~I~f~F~gg~~~~lp~~~yl~~~~~-~~~~Cl-af~~~~~-~~~~IiGn~~qq~~~V 538 (538)
|+|+|+| +|++|+||+++|+++... +...|+ +|.+... ...||||++|||++||
T Consensus 303 P~i~f~f-~g~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yv 359 (375)
T 1miq_A 303 PTLEFKS-ANNTYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFT 359 (375)
T ss_dssp CCEEEEC-SSCEEEECGGGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEE
T ss_pred CcEEEEE-CCEEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEE
Confidence 9999999 789999999999998752 346898 6887642 3689999999999985
No 22
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=7e-49 Score=406.25 Aligned_cols=292 Identities=14% Similarity=0.179 Sum_probs=238.6
Q ss_pred eeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC--CCcCCCCCCCCCCCCCcccccccCCccCCC
Q 041228 177 LVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY--DCFEQNGPHYDPKDSSSFKNISCHDPRCHL 254 (538)
Q Consensus 177 ~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~--~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~ 254 (538)
+..||. ...+.+|+++|.|| +|++.|+|||||+++||+|.+|. .|+.+.++.|||++| ||+...
T Consensus 7 ~~~~l~---n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~~-------- 72 (330)
T 1yg9_A 7 LYKLVH---VFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISDG-------- 72 (330)
T ss_dssp SCSCEE---EEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEEE--------
T ss_pred eEeeee---cCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEECC--------
Confidence 445666 35678899999999 89999999999999999999997 685566689999999 998753
Q ss_pred CCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc--cCcceeecc
Q 041228 255 VSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF--HGAAGLLGL 332 (538)
Q Consensus 255 ~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f--~~~dGILGL 332 (538)
|.|.+.|++|+ ..|.+++|+|+|+ +..++++.|||++.....| ...+|||||
T Consensus 73 ----------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig---------~~~~~~~~fg~~~~~~~~f~~~~~~GilGL 126 (330)
T 1yg9_A 73 ----------------NVQVKFFDTGS-AVGRGIEDSLTIS---------QLTTSQQDIVLADELSQEVCILSADVVVGI 126 (330)
T ss_dssp ----------------EEEEEETTTEE-EEEEEEEEEEEET---------TEEEEEEEEEEEEEECTHHHHTTCSEEEEC
T ss_pred ----------------CEEEEEECCce-EEEEEEEEEEEEC---------CEEEcCeEEEEEEEcccccccccCceEEEc
Confidence 68999999997 5999999999998 5689999999999873334 357999999
Q ss_pred cCCCCC-------hhhHH--hhhccCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEE
Q 041228 333 GRGPLS-------FSSQL--QSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQI 403 (538)
Q Consensus 333 g~~~lS-------l~sQl--~~~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L 403 (538)
|++.++ ++.+| ++++.++||+||.+... ....|.|+|||+|+.++.+++.|+|+. ...||.|.|
T Consensus 127 g~~~~s~~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~-~~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~w~v~l 199 (330)
T 1yg9_A 127 AAPGCPNALKGKTVLENFVEENLIAPVFSIHHARFQD-GEHFGEIIFGGSDWKYVDGEFTYVPLV------GDDSWKFRL 199 (330)
T ss_dssp SCTTSCCTTSCCCHHHHHHHTTSSCSEEEEEEEECTT-SCEEEEEEETSCCGGGEEEEEEEEEBS------CTTSCCEEC
T ss_pred CcchhccccCCCCHHHHHHhcCCCCceEEEEEcCCCC-CCCCCEEEECCcCHHHccCceEEEECC------CCCEEEEEe
Confidence 998877 55666 34457799999976432 223699999999999999999999998 347999999
Q ss_pred eeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCC-CCc-eecccCCCCCccc
Q 041228 404 KSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKD-FPI-LDPCYNVSGIEKM 481 (538)
Q Consensus 404 ~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~-~~~-ld~C~~~s~~~~~ 481 (538)
++|+|+++.+. ..+..+||||||++++||+++|++|+++|.+. ....+ ..+ ..+|+...
T Consensus 200 ~~i~v~~~~~~----------~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~----~~~~g~~~~~~~~C~~~~----- 260 (330)
T 1yg9_A 200 DGVKIGDTTVA----------PAGTQAIIDTSKAIIVGPKAYVNPINEAIGCV----VEKTTTRRICKLDCSKIP----- 260 (330)
T ss_dssp SEEEETTEEEE----------CTTCEEEECTTCSSEEEEHHHHHHHHHHHTCE----EEECSSCEEEEECGGGGG-----
T ss_pred CeEEECCEEEc----------CCCcEEEEecCCccccCCHHHHHHHHHHhCCc----ccCCCceEEEEEECCCcc-----
Confidence 99999998764 12468999999999999999999988776332 11122 123 45898754
Q ss_pred ccceEEEEEecCeEEEeCCCccEEEecCCCcEEE-EEEecCCCCceEecHhhhceeeC
Q 041228 482 ELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCL-AILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 482 ~lP~I~f~F~gg~~~~lp~~~yl~~~~~~~~~Cl-af~~~~~~~~~IiGn~~qq~~~V 538 (538)
.+|+|+|+| ||++|+||+++|+++. +..|+ +|.+.+..+.||||+.|||++||
T Consensus 261 ~~p~i~f~f-gg~~~~l~~~~y~~~~---~~~C~~~i~~~~~~~~~ilG~~fl~~~y~ 314 (330)
T 1yg9_A 261 SLPDVTFVI-NGRNFNISSQYYIQQN---GNLCYSGFQPCGHSDHFFIGDFFVDHYYS 314 (330)
T ss_dssp GSCCEEEEE-TTEEEEECHHHHEEEE---TTEEEESEEEETTCSSEEECHHHHTTEEE
T ss_pred ccCcEEEEE-CCEEEEECHHHhcccC---CCcEEEEEEeCCCCCeEEecHHHhhheEE
Confidence 589999999 8999999999999986 46898 57765445689999999999985
No 23
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=4.2e-48 Score=399.41 Aligned_cols=284 Identities=20% Similarity=0.207 Sum_probs=233.4
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAE 267 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~ 267 (538)
.+++|+++|.|| +|++.|+|||||+++||+|.+|..|.++.++.|||++|+ ++..
T Consensus 12 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~---------------------- 66 (325)
T 1ibq_A 12 NDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSA-TKLS---------------------- 66 (325)
T ss_dssp TTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSC-EECT----------------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcC-CccC----------------------
Confidence 678999999999 899999999999999999999999888888999999998 5421
Q ss_pred CCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc---cCcceeecccCCCCCh-----
Q 041228 268 NQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF---HGAAGLLGLGRGPLSF----- 339 (538)
Q Consensus 268 ~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f---~~~dGILGLg~~~lSl----- 339 (538)
.|.|.+.|++|+.+.|.+++|+|+|+ +..++++.|||++...+.| ...+||||||++.++.
T Consensus 67 --~~~~~i~Yg~Gs~~~G~~~~D~v~ig---------~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~ 135 (325)
T 1ibq_A 67 --GYSWDISYGDGSSASGDVYRDTVTVG---------GVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKA 135 (325)
T ss_dssp --TCBEEEECSSSCEEEEEEEEEEEEET---------TEEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSC
T ss_pred --CCEEEEEeCCCCEEEEEEEEeEEEEC---------CEEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCC
Confidence 37899999999889999999999998 5689999999999877655 3679999999987664
Q ss_pred ----hhHHhhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeec
Q 041228 340 ----SSQLQSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLS 414 (538)
Q Consensus 340 ----~sQl~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~ 414 (538)
..||...+ .++||+||.+. ..|.|+|||+|+.++.+++.|+|++. ...||.|.|++|+|+++.+.
T Consensus 136 ~~~~~~~l~~~i~~~~FS~~l~~~-----~~G~l~fGg~d~~~~~g~l~~~p~~~-----~~~~w~v~l~~i~v~~~~~~ 205 (325)
T 1ibq_A 136 QTTFFDTVKSQLDSPLFAVQLKHD-----APGVYDFGYIDDSKYTGSITYTDADS-----SQGYWGFSTDGYSIGDGSSS 205 (325)
T ss_dssp CCCHHHHHGGGSSSSEEEEEEETT-----EEEEEEESSCCGGGBSSCCEEEECBC-----TTSSCEEEECEEEETTSCCB
T ss_pred CCCHHHHHHHhcCCcEEEEEecCC-----CCceEEECCcChhhccCceEEEEcCC-----CCceEEEEECcEEECCeecc
Confidence 45663334 56999999752 36999999999999999999999984 34789999999999998653
Q ss_pred cCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCe
Q 041228 415 IPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGG 494 (538)
Q Consensus 415 i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~ 494 (538)
..+..+||||||++++||+++|++|+++|..+. +....+.+ ..+|+. .+|+|+|+| ||+
T Consensus 206 ----------~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~--~~~~~g~~-~~~C~~-------~~P~i~f~f-gg~ 264 (325)
T 1ibq_A 206 ----------SSGFSAIADTGTTLILLDDEIVSAYYEQVSGAQ--ESYEAGGY-VFSCST-------DLPDFTVVI-GDY 264 (325)
T ss_dssp ----------SCCEEEEECTTCCSEEECHHHHHHHHTTSTTCB--CCSSSSSC-EEETTC-------CCCCEEEEE-TTE
T ss_pred ----------CCCceEEEeCCCCcEeCCHHHHHHHHHhCCCce--EcCcCCeE-EEEcCC-------CCCcEEEEE-CCE
Confidence 124689999999999999999999876653221 22222333 458983 489999999 899
Q ss_pred EEEeCCCccEEEecC-CCcEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 495 VWNFPVENYFIRLDP-EDVVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 495 ~~~lp~~~yl~~~~~-~~~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|+||+++|+++... +...|++ |.+....+.||||+.|||++||
T Consensus 265 ~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~ 310 (325)
T 1ibq_A 265 KAVVPGKYINYAPVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYV 310 (325)
T ss_dssp EEEECHHHHEEEESSTTCSEEEESEEECTTTCSEEECHHHHTTEEE
T ss_pred EEEECHHHhcccccCCCCCeEEEEEEcCCCCCceEEChHHhcCEEE
Confidence 999999999987642 2378997 6665445789999999999985
No 24
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=3.6e-48 Score=399.80 Aligned_cols=282 Identities=20% Similarity=0.216 Sum_probs=231.9
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAE 267 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~ 267 (538)
.+.+|+++|.|| +|++.|+|||||+++||+|.+|..|.++.++.|||++|+ ++..
T Consensus 13 ~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~---------------------- 67 (323)
T 1izd_A 13 NDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSA-QKID---------------------- 67 (323)
T ss_dssp GGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTC-EEEE----------------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccC-CccC----------------------
Confidence 578899999999 899999999999999999999998888888999999998 5422
Q ss_pred CCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc---cCcceeecccCCCCCh-----
Q 041228 268 NQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF---HGAAGLLGLGRGPLSF----- 339 (538)
Q Consensus 268 ~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f---~~~dGILGLg~~~lSl----- 339 (538)
.|.|.+.|++|+.+.|.+++|+|+|+ +..++++.|||++...+.| ...+||||||++.++.
T Consensus 68 --~~~~~i~Yg~Gs~~~G~~~~D~v~ig---------~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~ 136 (323)
T 1izd_A 68 --GATWSISYGDGSSASGDVYKDKVTVG---------GVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTP 136 (323)
T ss_dssp --EEEEEEECTTSCEEEEEEEEEEEEET---------TEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSC
T ss_pred --CCeEEEEcCCCCeEEEEEEEEEEEEC---------CEEECceEEEEEEeccccccccCCCceEEecCcccccccCCCC
Confidence 37899999999888999999999998 5789999999999877655 3679999999987664
Q ss_pred ----hhHHhh-hccCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeec
Q 041228 340 ----SSQLQS-LYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLS 414 (538)
Q Consensus 340 ----~sQl~~-~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~ 414 (538)
..+|.. +..++||+||.+. ..|.|+|||+|+.++.+++.|+|++. ...||.|.|++|+||+ .+.
T Consensus 137 ~~~~~~~l~~~i~~~~FS~~L~~~-----~~G~l~fGg~d~~~~~g~l~~~p~~~-----~~~~w~v~l~~i~v~~-~~~ 205 (323)
T 1izd_A 137 QKTFFDNVKSSLSEPIFAVALKHN-----APGVYDFGYTDSSKYTGSITYTDVDN-----SQGFWGFTADGYSIGS-DSS 205 (323)
T ss_dssp CCCHHHHHGGGSSSSEEEEECCTT-----SCEEEEESSCCTTSEEEEEEEEECBC-----TTSSCEEEESEEEETT-EEE
T ss_pred CCCHHHHHHHhccCcEEEEEccCC-----CCCEEEECCcCccccccceEEEECCC-----CCceEEEEECeEEECC-ccc
Confidence 345532 3346999999642 26999999999999999999999984 3578999999999999 442
Q ss_pred cCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCe
Q 041228 415 IPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGG 494 (538)
Q Consensus 415 i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~ 494 (538)
..+..+||||||++++||+++|++|.++|..+. +....+. +..+|+. .+|+|+|+| ||+
T Consensus 206 ----------~~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~--~~~~~g~-~~~~C~~-------~~P~i~f~f-gg~ 264 (323)
T 1izd_A 206 ----------SDSITGIADTGTTLLLLDDSIVDAYYEQVNGAS--YDSSQGG-YVFPSSA-------SLPDFSVTI-GDY 264 (323)
T ss_dssp ----------CCCEEEEECTTCCSEEECHHHHHHHHTTSTTCE--EETTTTE-EEEETTC-------CCCCEEEEE-TTE
T ss_pred ----------CCCceEEEeCCCcceeCCHHHHHHHHHhCCCcE--EcCcCCE-EEEECCC-------CCceEEEEE-CCE
Confidence 124689999999999999999999876553211 1112232 3357983 489999999 899
Q ss_pred EEEeCCCccEEEecCCCcEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 495 VWNFPVENYFIRLDPEDVVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 495 ~~~lp~~~yl~~~~~~~~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|+||+++|+++.. ++..|++ |.+....+.||||+.|||++||
T Consensus 265 ~~~i~~~~~~~~~~-~~~~C~~~i~~~~~~~~~IlG~~fl~~~y~ 308 (323)
T 1izd_A 265 TATVPGEYISFADV-GNGQTFGGIQSNSGIGFSIFGDVFLKSQYV 308 (323)
T ss_dssp EEEECHHHHEEEEC-STTEEEESEEECTTTSSEEECHHHHTTEEE
T ss_pred EEecCHHHeEEecC-CCCeEEEEEEcCCCCCcEEEChHHhcCEEE
Confidence 99999999999864 4678997 7765545789999999999985
No 25
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=1.6e-48 Score=404.15 Aligned_cols=288 Identities=22% Similarity=0.317 Sum_probs=231.3
Q ss_pred eeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCC--C---------CCCcCCCCCCCCCCCCCccccc
Q 041228 177 LVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVP--C---------YDCFEQNGPHYDPKDSSSFKNI 245 (538)
Q Consensus 177 ~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~--C---------~~C~~q~~~~FdPs~SSTy~~~ 245 (538)
+.+|+.. +.++|+++|.||||+|++.|+|||||+++||+|.. | ..|. .++.|||++|+||+..
T Consensus 3 v~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~--~~~~y~~~~SsT~~~~ 76 (342)
T 3pvk_A 3 VPVTLHN----EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCK--QKGTYDPSGSSASQDL 76 (342)
T ss_dssp EEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGG--TTCCBCGGGCTTCEEE
T ss_pred cceEEec----CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCC--CCCcCCCccCcceeec
Confidence 4556663 56889999999999999999999999999998543 4 2454 4589999999999977
Q ss_pred ccCCccCCCCCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCccC
Q 041228 246 SCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHG 325 (538)
Q Consensus 246 ~C~s~~C~~~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~~ 325 (538)
. |.|.+.|+||+.+.|.+++|+|+|+ +..++++.|||++... .
T Consensus 77 ~------------------------~~~~i~Yg~gs~~~G~~~~D~v~ig---------~~~v~~~~fg~~~~~~----~ 119 (342)
T 3pvk_A 77 N------------------------TPFKIGYGDGSSSQGTLYKDTVGFG---------GVSIKNQVLADVDSTS----I 119 (342)
T ss_dssp E------------------------EEEEEECSSSCEEEEEEEEEEEEET---------TEEEEEEEEEEEEEES----S
T ss_pred C------------------------CeEEEEecCCCeEEEEEEEEEEEEC---------CEEecceEEEEEEccC----C
Confidence 4 7899999999889999999999998 5789999999998765 5
Q ss_pred cceeecccCCCC-------ChhhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCc
Q 041228 326 AAGLLGLGRGPL-------SFSSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPV 395 (538)
Q Consensus 326 ~dGILGLg~~~l-------Sl~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~ 395 (538)
.+||||||++.+ +++.|| ++++. ++||+||.+.. ...|.|+|||+|+.++.+++.|+|+..
T Consensus 120 ~~GilGLg~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~------ 190 (342)
T 3pvk_A 120 DQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPD---AATGQIIFGGVDNAKYSGSLIALPVTS------ 190 (342)
T ss_dssp SSCEEECSCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTT---CSEEEEEETEEETTSBSSCCEEEECCC------
T ss_pred CccEEEecCccccccccCCcHHHHHHhcCCCCCceEEEEeCCCC---CCCcEEEECccCccceeeeeEEeecCc------
Confidence 799999999874 577777 34554 59999997543 236999999999999999999999983
Q ss_pred cceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCC
Q 041228 396 DTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNV 475 (538)
Q Consensus 396 ~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~ 475 (538)
..+|.|.|++|.|+|+.+..+ +..+||||||++++||+++|++|.++|...... .......++.+|+.
T Consensus 191 ~~~~~v~l~~i~v~g~~~~~~----------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~-~~~~~~~~~~~C~~- 258 (342)
T 3pvk_A 191 DRELRISLGSVEVSGKTINTD----------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQ-DSNGNSFYEVDCNL- 258 (342)
T ss_dssp SSSCEEEEEEEEETTEEEEEE----------EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEE-CTTSCEEEEECSCC-
T ss_pred cceEEEEEeEEEECCEEecCC----------CceEEEeCCCCCeecCHHHHHHHHHHcCCeecc-cCCCceEEEEecCC-
Confidence 358999999999999988642 258999999999999999999988777543321 11111124579984
Q ss_pred CCCcccccceEEEEEecCeEEEeCCCccEEEecC-CC---cEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 476 SGIEKMELPEFGIQFADGGVWNFPVENYFIRLDP-ED---VVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 476 s~~~~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~-~~---~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|+|+|+|++|++|+||+++|+++... .+ ..|+. +.+ .+.||||+.|||++||
T Consensus 259 -------~p~i~f~f~~g~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~---~~~~ilG~~fl~~~y~ 316 (342)
T 3pvk_A 259 -------SGDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDV---NDANILGDNFLRSAYI 316 (342)
T ss_dssp -------CSEEEEEESTTCEEEEEGGGGEEC----------CEEESEEE---CTTCEECHHHHTTEEE
T ss_pred -------CCceEEEECCCCEEEEcHHHheeeccccCCCcCCeeEEEEee---CCCeEeCHHHHhcEEE
Confidence 599999997689999999999997421 22 67986 544 3589999999999985
No 26
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=3.2e-48 Score=417.66 Aligned_cols=290 Identities=21% Similarity=0.294 Sum_probs=237.1
Q ss_pred eeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCC
Q 041228 178 VATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSS 257 (538)
Q Consensus 178 ~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~ 257 (538)
..||. ...+++|+++|.||||+|++.|+|||||+++||+|.+|..+.|+.++.|||++|+||+...
T Consensus 129 ~~~L~---n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~----------- 194 (453)
T 2bju_A 129 NIELV---DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDG----------- 194 (453)
T ss_dssp EEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEE-----------
T ss_pred ceeeE---ecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECC-----------
Confidence 35666 3567899999999999999999999999999999999974444456899999999998764
Q ss_pred CCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEecc--CC-c--cCcceeecc
Q 041228 258 PDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNR--GL-F--HGAAGLLGL 332 (538)
Q Consensus 258 ~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~--g~-f--~~~dGILGL 332 (538)
|.|.+.|++|+ +.|.+++|+|+|+ +..++ +.|||++... |. | ...+|||||
T Consensus 195 -------------~~~~i~YgdGs-~~G~~~~Dtv~ig---------~~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGL 250 (453)
T 2bju_A 195 -------------TKVEMNYVSGT-VSGFFSKDLVTVG---------NLSLP-YKFIEVIDTNGFEPTYTASTFDGILGL 250 (453)
T ss_dssp -------------EEEEEECSSSE-EEEEEEEEEEEET---------TEEEE-EEEEEEEECGGGTTHHHHSSCCEEEEC
T ss_pred -------------cEEEEEcCCCC-eEEEEEEEEEEEe---------CcEEE-EEEEEEEEecccCccccccCCceeEec
Confidence 78999999997 8999999999998 56889 9999999987 64 3 367999999
Q ss_pred cCCCCCh------hhHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEE
Q 041228 333 GRGPLSF------SSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQI 403 (538)
Q Consensus 333 g~~~lSl------~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L 403 (538)
|++.++. +.+| ++++ .++||+||.+.+ ...|.|+|||+|+.++.+++.|+|+. ...||.|.|
T Consensus 251 g~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~---~~~G~l~fGg~D~~~y~G~l~~~pv~------~~~~w~V~l 321 (453)
T 2bju_A 251 GWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHD---KHTGFLTIGGIEERFYEGPLTYEKLN------HDLYWQITL 321 (453)
T ss_dssp SCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTT---TBCEEEEESSCCGGGEEEEEEEEEEE------EETTEEEEE
T ss_pred cCCcccccCCCcHHHHHHHCCCCCCCEEEEEeCCCC---CCCeEEEECCCCHHHcCCceEEEecC------CCceEEEEE
Confidence 9987664 3455 3445 469999998752 34699999999999999999999998 357999999
Q ss_pred eeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCccccc
Q 041228 404 KSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMEL 483 (538)
Q Consensus 404 ~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~l 483 (538)
+ |+|||+ + + .+..+||||||++++||+++|++|+++| +..+...+..+..+|+. . .+
T Consensus 322 ~-I~Vgg~-~-~----------~~~~aIiDSGTsl~~lP~~~~~~l~~~i----~~~~~~~g~~~~v~C~~-~-----~~ 378 (453)
T 2bju_A 322 D-AHVGNI-M-L----------EKANCIVDSGTSAITVPTDFLNKMLQNL----DVIKVPFLPFYVTLCNN-S-----KL 378 (453)
T ss_dssp E-EEETTE-E-E----------EEEEEEECTTCCSEEECHHHHHHHTTTS----SCEECTTSSCEEEETTC-T-----TC
T ss_pred E-EEECcE-E-e----------ccccEEEcCCCCeEecCHHHHHHHHHHh----CCcccCCCceEEEecCC-C-----CC
Confidence 9 999993 3 1 1368999999999999999999977655 33332233134579997 3 58
Q ss_pred ceEEEEEecCeEEEeCCCccEEEecC-CCcEEE-EEEecCC-CCceEecHhhhceeeC
Q 041228 484 PEFGIQFADGGVWNFPVENYFIRLDP-EDVVCL-AILGTPR-SALSIIGNYQQQNFHI 538 (538)
Q Consensus 484 P~I~f~F~gg~~~~lp~~~yl~~~~~-~~~~Cl-af~~~~~-~~~~IiGn~~qq~~~V 538 (538)
|+|+|+| +|++|+||+++|+++... +...|+ +|.+... .+.||||++|||++||
T Consensus 379 P~itf~f-gg~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yv 435 (453)
T 2bju_A 379 PTFEFTS-ENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFT 435 (453)
T ss_dssp CCEEEEC-SSCEEEECHHHHEEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEE
T ss_pred CcEEEEE-CCEEEEECHHHhEeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEE
Confidence 9999999 789999999999998753 346898 5877642 4589999999999985
No 27
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=1.5e-48 Score=412.74 Aligned_cols=303 Identities=17% Similarity=0.245 Sum_probs=237.3
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAE 267 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~ 267 (538)
...+|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+||+...
T Consensus 19 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~----~~~y~~~~SsT~~~~~--------------------- 73 (395)
T 2qp8_A 19 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFL----HRYYQRQLSSTYRDLR--------------------- 73 (395)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTC----SCCCCGGGCTTCEEEE---------------------
T ss_pred CCceEEEEEEecCCCceEEEEEecCCCceEEECCCCccc----cCCcCcccCCCceeCC---------------------
Confidence 356799999999999999999999999999999999655 3789999999998764
Q ss_pred CCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEe-eeEEEEEEeccCCcc---CcceeecccCCCCChh---
Q 041228 268 NQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVE-NVMFGCGHWNRGLFH---GAAGLLGLGRGPLSFS--- 340 (538)
Q Consensus 268 ~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~-~~~FGc~~~~~g~f~---~~dGILGLg~~~lSl~--- 340 (538)
|.|.+.|++|+ +.|.+++|+|+|+. +..++ .+.|+|.....+.|. ..+||||||++.++.+
T Consensus 74 ---~~~~i~Yg~Gs-~~G~~~~Dtv~ig~--------g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~ 141 (395)
T 2qp8_A 74 ---KGVYVPYTQGK-WEGELGTDLVSIPH--------GPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDS 141 (395)
T ss_dssp ---EEEEEECSSCE-EEEEEEEEEEECTT--------SCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTT
T ss_pred ---ceEEEEECCcE-EEEEEEeEEEEECC--------CCCceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCC
Confidence 78999999997 58999999999972 11222 367888877666663 5699999999876543
Q ss_pred -----hHH--hhhccCceEEEecCCC-------CCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeE
Q 041228 341 -----SQL--QSLYGHSFSYCLVDRN-------SDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSI 406 (538)
Q Consensus 341 -----sQl--~~~~~~~FSycL~~~~-------~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gI 406 (538)
.+| +..+.++||+||.... ......|.|+|||+|+.++.+++.|+|+.. ..||.|.|++|
T Consensus 142 ~~~~~~~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~------~~~~~v~l~~i 215 (395)
T 2qp8_A 142 LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR------EWYYEVIIVRV 215 (395)
T ss_dssp SCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS------BTTBBCCEEEE
T ss_pred CCCHHHHHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCC------CceEEEEEEEE
Confidence 355 4456679999996421 001236999999999999999999999983 47999999999
Q ss_pred EeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCC--CceecccCCCCCcccccc
Q 041228 407 IVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDF--PILDPCYNVSGIEKMELP 484 (538)
Q Consensus 407 sVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~--~~ld~C~~~s~~~~~~lP 484 (538)
+|+|+.+.++...|. ...+||||||++++||+++|++|+++|.+.+.......++ ....+|++........+|
T Consensus 216 ~v~g~~~~~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P 290 (395)
T 2qp8_A 216 EINGQDLKMDCKEYN-----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFP 290 (395)
T ss_dssp EETTEECCCCGGGGG-----SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSC
T ss_pred EECCEEcccCccccC-----CceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCccccccccccccccccchHhhCC
Confidence 999999887765552 3689999999999999999999999998775421111111 123689987755555799
Q ss_pred eEEEEEecCe-----EEEeCCCccEEEecC---CCcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 485 EFGIQFADGG-----VWNFPVENYFIRLDP---EDVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 485 ~I~f~F~gg~-----~~~lp~~~yl~~~~~---~~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|+|+|+|+. +|+|++++|+++... ....|++|.-.+....||||+.|||++||
T Consensus 291 ~i~f~f~g~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~~~~~ILG~~fl~~~yv 352 (395)
T 2qp8_A 291 VISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYV 352 (395)
T ss_dssp CEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEE
T ss_pred cEEEEEccCCCCceEEEEECHHHhEeecccCCCCCceEEEEEecCCCCcEEEChHHhCCeeE
Confidence 9999997653 799999999998753 23589854322224679999999999985
No 28
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=6.8e-48 Score=418.10 Aligned_cols=295 Identities=23% Similarity=0.396 Sum_probs=234.1
Q ss_pred cCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC---CCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCC
Q 041228 187 LGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY---DCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRP 263 (538)
Q Consensus 187 ~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~---~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~ 263 (538)
..+++|+++|.||||+|+|.|+|||||+++||+|..|. .|..+ +.|||++|+||+...
T Consensus 49 ~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~----------------- 109 (478)
T 1qdm_A 49 YMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLH--SRYKAGASSTYKKNG----------------- 109 (478)
T ss_dssp GGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGS--CCBCGGGCTTCBCCC-----------------
T ss_pred ccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCC--CCCCcccCCCeeeCC-----------------
Confidence 45789999999999999999999999999999999996 68754 799999999998653
Q ss_pred CCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecccCCCCChh
Q 041228 264 CQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGLGRGPLSFS 340 (538)
Q Consensus 264 C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGLg~~~lSl~ 340 (538)
|.|.+.|++|+ +.|++++|+|+|+ +..++++.|||++...+. | ...+||||||++.+++.
T Consensus 110 -------~~~~i~Yg~Gs-~~G~~~~Dtv~ig---------~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~ 172 (478)
T 1qdm_A 110 -------KPAAIQYGTGS-IAGYFSEDSVTVG---------DLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVG 172 (478)
T ss_dssp -------CEEEEEETTEE-EEEEEEEEEEEET---------TEEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGG
T ss_pred -------cEEEEEcCCCC-eEEEEEEEEEEEC---------CeEECCEEEEEEEecCCcccccccccceecccccccccC
Confidence 67999999997 8999999999998 568999999999987764 3 36799999999988753
Q ss_pred ------hHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCe
Q 041228 341 ------SQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGE 411 (538)
Q Consensus 341 ------sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~ 411 (538)
.+| ++++ .++||+||.+... ....|.|+|||+|+.++.+++.|+|+. ...||.|.|++|.|||+
T Consensus 173 ~~~p~~~~l~~qg~i~~~~FS~~L~~~~~-~~~~G~l~fGg~d~~~~~G~l~~~pv~------~~~~w~v~l~~i~v~g~ 245 (478)
T 1qdm_A 173 KAVPVWYKMIEQGLVSDPVFSFWLNRHVD-EGEGGEIIFGGMDPKHYVGEHTYVPVT------QKGYWQFDMGDVLVGGK 245 (478)
T ss_dssp GCCCHHHHHTTTTCCSSSEEEEECCCC------CEEEEETCCCTTSEEEEEEEEEEE------EETTEEEEECCEEETTE
T ss_pred CCCcHHHHHHHCCCCCCCEEEEEeecCCC-CCCCeEEEeCCcCHhhcCCCceEEecc------CCCeEEEEEeEEEECCE
Confidence 234 3445 3699999976421 223699999999999999999999997 35799999999999998
Q ss_pred eeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHh----------------------cCCc--------
Q 041228 412 VLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKV----------------------KGYP-------- 461 (538)
Q Consensus 412 ~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~----------------------~~~~-------- 461 (538)
.+.++. .+..+||||||++++||+++|++|.++|.+.. ...+
T Consensus 246 ~~~~~~--------~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~i 317 (478)
T 1qdm_A 246 STGFCA--------GGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQV 317 (478)
T ss_dssp ECSTTT--------TCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHT
T ss_pred EEeecC--------CCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccc
Confidence 876532 34789999999999999999999988874310 0000
Q ss_pred ---------------------------------------------------------------------CCCCCCceecc
Q 041228 462 ---------------------------------------------------------------------LVKDFPILDPC 472 (538)
Q Consensus 462 ---------------------------------------------------------------------~~~~~~~ld~C 472 (538)
......+..+|
T Consensus 318 glC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C 397 (478)
T 1qdm_A 318 GLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDC 397 (478)
T ss_dssp TCC---------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECG
T ss_pred cccccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeec
Confidence 00011123455
Q ss_pred cCCCCCcccccceEEEEEecCeEEEeCCCccEEEecCC-CcEEEE-EEecC----CCCceEecHhhhceeeC
Q 041228 473 YNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPE-DVVCLA-ILGTP----RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 473 ~~~s~~~~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~~-~~~Cla-f~~~~----~~~~~IiGn~~qq~~~V 538 (538)
.... .+|+|+|+| ||+.|+|+|++|+++...+ ...|++ |.... .+..||||++|||++||
T Consensus 398 ~~~~-----~lP~i~f~~-gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~ 463 (478)
T 1qdm_A 398 GSLG-----SMPDIEFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHT 463 (478)
T ss_dssp GGGT-----TCCCEEEEE-TTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEE
T ss_pred cccc-----ccccEEEEE-CCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEE
Confidence 5433 589999999 7999999999999987532 357996 76532 35689999999999985
No 29
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=4.2e-48 Score=399.13 Aligned_cols=282 Identities=19% Similarity=0.235 Sum_probs=230.8
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAE 267 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~ 267 (538)
...+|+++|.|| +|++.|+|||||+++||+|.+|..|.++.++.|||++|+ ++..
T Consensus 13 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~---------------------- 67 (323)
T 1bxo_A 13 NDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATG-KELS---------------------- 67 (323)
T ss_dssp GGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHC-EEEE----------------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCC-cccC----------------------
Confidence 578899999999 899999999999999999999999888888999999988 5432
Q ss_pred CCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc---cCcceeecccCCCCCh-----
Q 041228 268 NQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF---HGAAGLLGLGRGPLSF----- 339 (538)
Q Consensus 268 ~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f---~~~dGILGLg~~~lSl----- 339 (538)
.|.|.+.|++|+.+.|.+++|+|+|+ +..++++.|||++...+.| ...+||||||++.++.
T Consensus 68 --~~~~~i~Yg~Gs~~~G~~~~D~v~ig---------~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~ 136 (323)
T 1bxo_A 68 --GYTWSISYGDGSSASGNVFTDSVTVG---------GVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQS 136 (323)
T ss_dssp --EEEEEEECTTSCEEEEEEEEEEEEET---------TEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSC
T ss_pred --CCeEEEEeCCCCeEEEEEEEEEEEEC---------CEEECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCC
Confidence 37899999999888999999999998 5689999999999877655 3679999999986654
Q ss_pred ----hhHHhh-hccCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeec
Q 041228 340 ----SSQLQS-LYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLS 414 (538)
Q Consensus 340 ----~sQl~~-~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~ 414 (538)
..+|.. +..++||+||.+. ..|.|+|||+|+.++.+++.|+|++. ...||.|.|++|+||+ ...
T Consensus 137 ~~~~~~~l~~~i~~~~FS~~L~~~-----~~G~l~fGg~d~~~~~g~l~~~p~~~-----~~~~w~v~l~~i~v~~-~~~ 205 (323)
T 1bxo_A 137 QTTFFDTVKSSLAQPLFAVALKHQ-----QPGVYDFGFIDSSKYTGSLTYTGVDN-----SQGFWSFNVDSYTAGS-QSG 205 (323)
T ss_dssp CCCHHHHHGGGBSSSEEEEECCSS-----SCEEEEESSCCGGGBSSCCEEEECBC-----TTSSCEEEEEEEEETT-EEE
T ss_pred CCCHHHHHHHhcCCcEEEEEEeCC-----CCceEEEeCcChhhccCceEEEECCC-----CCCeEEEEEeeEEECC-ccC
Confidence 345533 3346999999642 36999999999999999999999984 3478999999999999 211
Q ss_pred cCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCe
Q 041228 415 IPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGG 494 (538)
Q Consensus 415 i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~ 494 (538)
.+..+||||||++++||+++|++|.++|..+. +....+. +..+|+. .+|+|+|+| ||+
T Consensus 206 -----------~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~--~~~~~g~-~~~~C~~-------~~P~i~f~f-gg~ 263 (323)
T 1bxo_A 206 -----------DGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQ--QDSNAGG-YVFDCST-------NLPDFSVSI-SGY 263 (323)
T ss_dssp -----------EEEEEEECTTCSSEEECHHHHHHHHTTSTTCE--EETTTTE-EEECTTC-------CCCCEEEEE-TTE
T ss_pred -----------CCceEEEeCCCCceeCCHHHHHHHHHhCCCce--EcCcCCE-EEEECCC-------CCceEEEEE-CCE
Confidence 13689999999999999999999876653211 1112232 3458983 489999999 899
Q ss_pred EEEeCCCccEEEecCCCcEEEE-EEecCCCCceEecHhhhceeeC
Q 041228 495 VWNFPVENYFIRLDPEDVVCLA-ILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 495 ~~~lp~~~yl~~~~~~~~~Cla-f~~~~~~~~~IiGn~~qq~~~V 538 (538)
+|+||+++|+++...+...|++ |.+....+.||||+.|||++||
T Consensus 264 ~~~l~~~~~~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~ 308 (323)
T 1bxo_A 264 TATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYV 308 (323)
T ss_dssp EEEECHHHHEEEECSSSSCEEESEEECTTCSSEEECHHHHTTEEE
T ss_pred EEEECHHHeEEeccCCCCeEEEEEECCCCCCcEEEChHHHcCEEE
Confidence 9999999999986423478997 7665545789999999999985
No 30
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=2.1e-47 Score=404.69 Aligned_cols=302 Identities=17% Similarity=0.267 Sum_probs=236.7
Q ss_pred CeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCC
Q 041228 189 AGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAEN 268 (538)
Q Consensus 189 ~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~ 268 (538)
..+|+++|.||||+|+|.|+|||||+++||+|.+| |. .++.|||++|+||+...
T Consensus 27 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~~--~~~~y~~~~SsT~~~~~---------------------- 80 (402)
T 3vf3_A 27 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PF--LHRYYQRQLSSTYRDLR---------------------- 80 (402)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TT--CSCCCCGGGCTTCEEEE----------------------
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--Cc--ccCCcCcccCcccccCC----------------------
Confidence 35799999999999999999999999999999998 43 45799999999999764
Q ss_pred CceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEe-eeEEEEEEeccCCc---cCcceeecccCCCCCh-----
Q 041228 269 QTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVE-NVMFGCGHWNRGLF---HGAAGLLGLGRGPLSF----- 339 (538)
Q Consensus 269 ~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~-~~~FGc~~~~~g~f---~~~dGILGLg~~~lSl----- 339 (538)
|.|.+.|++|+ +.|.+++|+|+|+.. ..+. .+.|+|.....+.| ...+||||||++.++.
T Consensus 81 --~~~~i~Yg~Gs-~~G~~~~D~v~ig~~--------~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~ 149 (402)
T 3vf3_A 81 --KGVYVPYTQGK-WEGELGTDLVSIPHG--------PNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSL 149 (402)
T ss_dssp --EEEEEECSSCE-EEEEEEEEEEECTTS--------CSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTS
T ss_pred --CEEEEEECcEE-EEEEEEEEEEEECCc--------cccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcC
Confidence 78999999997 699999999999721 1223 35688888777665 3569999999987654
Q ss_pred ---hhHH--hhhccCceEEEecCC----CCC---CCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEE
Q 041228 340 ---SSQL--QSLYGHSFSYCLVDR----NSD---TNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSII 407 (538)
Q Consensus 340 ---~sQl--~~~~~~~FSycL~~~----~~~---~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIs 407 (538)
+.+| +..+.++||+||.+. +.. ....|.|+|||+|+.++.+++.|+|+. ...||.|.|++|.
T Consensus 150 ~~~~~~L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~w~v~l~~i~ 223 (402)
T 3vf3_A 150 EPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR------REWYYEVIIVRVE 223 (402)
T ss_dssp CCHHHHHHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECS------SBTTBEECEEEEE
T ss_pred CcHHHHHHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCC------cCcEEEEEEeEEE
Confidence 3455 445667999999642 111 234699999999999999999999998 3579999999999
Q ss_pred eCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCC--CceecccCCCCCcccccce
Q 041228 408 VGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDF--PILDPCYNVSGIEKMELPE 485 (538)
Q Consensus 408 VgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~--~~ld~C~~~s~~~~~~lP~ 485 (538)
|+|+.+.++...|. ...+||||||++++||+++|++|+++|.+..........+ .++++|+.........+|+
T Consensus 224 v~g~~~~~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ 298 (402)
T 3vf3_A 224 INGQDLKMDCKEYN-----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 298 (402)
T ss_dssp ETTEECCCCGGGGG-----SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCC
T ss_pred ECCEEecccccccC-----CCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccchHhhCCc
Confidence 99999887655442 4689999999999999999999999998886421111221 1257999877555557999
Q ss_pred EEEEEecCe-----EEEeCCCccEEEecCC---CcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 486 FGIQFADGG-----VWNFPVENYFIRLDPE---DVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 486 I~f~F~gg~-----~~~lp~~~yl~~~~~~---~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
|+|+|.|+. +|+|++++|+++.... ...|++|........||||+.|||++||
T Consensus 299 i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~fl~~~yv 359 (402)
T 3vf3_A 299 ISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYV 359 (402)
T ss_dssp EEEEEECSSTTEEEEEEECHHHHEEECCCGGGTTEEEEEECEEEESSCEEECHHHHTTEEE
T ss_pred eEEEEecCCCCceEEEEECHHHheehhccCCCCCceEEEEeccCCCCcEEEChHHhCCeEE
Confidence 999996543 6999999999987531 1489975433335679999999999986
No 31
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=2.3e-47 Score=411.35 Aligned_cols=304 Identities=16% Similarity=0.246 Sum_probs=240.8
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAE 267 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~ 267 (538)
...+|+++|.||||+|+|.|+|||||+++||+|.+| |. .++.|||++|+||+...
T Consensus 72 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c~--~~~~y~~~~SsT~~~~~--------------------- 126 (455)
T 3lpj_A 72 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PF--LHRYYQRQLSSTYRDLR--------------------- 126 (455)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TT--CSCCCCGGGCTTCEEEE---------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--cc--cCCcccCCCCCCcccCC---------------------
Confidence 345899999999999999999999999999999998 53 45899999999998774
Q ss_pred CCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCc---cCcceeecccCCCCCh-----
Q 041228 268 NQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLF---HGAAGLLGLGRGPLSF----- 339 (538)
Q Consensus 268 ~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f---~~~dGILGLg~~~lSl----- 339 (538)
|.|.+.|++|+ +.|.+++|+|+|+... ...+ .+.|+|.....+.| ...+||||||++.++.
T Consensus 127 ---~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~------~~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~ 195 (455)
T 3lpj_A 127 ---KGVYVPYTQGK-WEGELGTDLVSIPHGP------NVTV-RANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSL 195 (455)
T ss_dssp ---EEEEEECSSCE-EEEEEEEEEEECTTSC------SCEE-EEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTS
T ss_pred ---ccEEEEeCCeE-EEEEEEEEEEEECCCc------ceee-EEEEEEEEccCcccccCCCcceEEEeCccccccccCCC
Confidence 78999999997 6999999999997210 1222 36799988877765 3569999999987654
Q ss_pred ---hhHH--hhhccCceEEEecCCCCC-------CCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEE
Q 041228 340 ---SSQL--QSLYGHSFSYCLVDRNSD-------TNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSII 407 (538)
Q Consensus 340 ---~sQl--~~~~~~~FSycL~~~~~~-------~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIs 407 (538)
+.+| +..+.++||+||.+.... ....|.|+|||+|+.++.+++.|+|+. ...||.|.|++|.
T Consensus 196 ~~~~~~L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~w~v~l~~i~ 269 (455)
T 3lpj_A 196 EPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR------REWYYEVIIVRVE 269 (455)
T ss_dssp CCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECC------SBTTBBCCEEEEE
T ss_pred CcHHHHHHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecC------CCceeEEEEeEEE
Confidence 3455 445667999999653110 233699999999999999999999998 3579999999999
Q ss_pred eCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCC--CCceecccCCCCCcccccce
Q 041228 408 VGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKD--FPILDPCYNVSGIEKMELPE 485 (538)
Q Consensus 408 VgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~--~~~ld~C~~~s~~~~~~lP~ 485 (538)
|+|+.+.++...|. ...+||||||++++||+++|++|.++|.+.......... ..++++|+.........+|+
T Consensus 270 v~g~~~~~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~~~~~~~P~ 344 (455)
T 3lpj_A 270 INGQDLKMDCKEYN-----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 344 (455)
T ss_dssp ETTEECCCCGGGGG-----SSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCC
T ss_pred ECCEEccccccccC-----CCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccCCchhcCCc
Confidence 99999887655442 468999999999999999999999999887642111111 12247999987655556999
Q ss_pred EEEEEecCe-----EEEeCCCccEEEecCC---CcEEEEEEecCCCCceEecHhhhceeeC
Q 041228 486 FGIQFADGG-----VWNFPVENYFIRLDPE---DVVCLAILGTPRSALSIIGNYQQQNFHI 538 (538)
Q Consensus 486 I~f~F~gg~-----~~~lp~~~yl~~~~~~---~~~Claf~~~~~~~~~IiGn~~qq~~~V 538 (538)
|+|+|+|+. +|+|++++|+++.... ...|++|........||||+.|||++||
T Consensus 345 i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~~~~~~ILG~~fl~~~yv 405 (455)
T 3lpj_A 345 ISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYV 405 (455)
T ss_dssp EEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEE
T ss_pred EEEEEcCCCcCceEEEEECHHHheEeccCCCCCCceEEEEeccCCCCcEEEChHHhCCeEE
Confidence 999996543 6999999999987632 2589986443335689999999999986
No 32
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=4.1e-46 Score=401.22 Aligned_cols=288 Identities=18% Similarity=0.262 Sum_probs=233.8
Q ss_pred eeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCC
Q 041228 179 ATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSP 258 (538)
Q Consensus 179 ~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~ 258 (538)
.||. ...+.+|+++|.||||+|++.|+|||||+++||+|..|....|+.++.|||++|+||+...
T Consensus 129 ~pL~---n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~------------ 193 (451)
T 3qvc_A 129 VELK---DLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDD------------ 193 (451)
T ss_dssp CCGG---GGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE------------
T ss_pred ccee---ecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCC------------
Confidence 3555 3567899999999999999999999999999999999953223455899999999998753
Q ss_pred CCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEe----ccCCc--cCcceeecc
Q 041228 259 DPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHW----NRGLF--HGAAGLLGL 332 (538)
Q Consensus 259 ~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~----~~g~f--~~~dGILGL 332 (538)
|.|.+.|+||+ +.|.++.|+|+|+ +..++ +.|||++. ..+ | ...+|||||
T Consensus 194 ------------~~f~i~YgdGs-~~G~~~~Dtv~ig---------g~~v~-~~Fg~a~~t~~~~~~-f~~~~~dGILGL 249 (451)
T 3qvc_A 194 ------------TPVKLTSKAGT-ISGIFSKDLVTIG---------KLSVP-YKFIEMTEIVGFEPF-YSESDVDGVFGL 249 (451)
T ss_dssp ------------EEEEEECSSEE-EEEEEEEEEEEET---------TEEEE-EEEEEEEEEEECTTH-HHHSCCCEEEEC
T ss_pred ------------CEEEEEECCCE-EEEEEEEEEEEEC---------CEEEE-EEEEEEEeccccCCC-ccCCCCCEEEec
Confidence 78999999997 9999999999998 57889 99999998 666 5 256999999
Q ss_pred cCCCCC------hhhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEE
Q 041228 333 GRGPLS------FSSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQI 403 (538)
Q Consensus 333 g~~~lS------l~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L 403 (538)
|++.++ ++.+| ++++. ++||+||.+.. ...|.|+|||+|+.++.+++.|+|+. ...||.|.|
T Consensus 250 g~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~---~~~G~l~fGgiD~s~y~G~l~~~pv~------~~~~w~v~l 320 (451)
T 3qvc_A 250 GWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPEN---KNKGYLTIGGIEERFFDGPLNYEKLN------HDLMWQVDL 320 (451)
T ss_dssp SSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTC---TTEEEEEESSCCGGGEEEEEEEEECS------STTSSEEEE
T ss_pred CCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCC---CCCCEEEECCcchhhcCCceEEEEcc------cCCeeEEEE
Confidence 998754 45566 34454 59999997652 23699999999999999999999998 357999999
Q ss_pred eeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCccccc
Q 041228 404 KSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMEL 483 (538)
Q Consensus 404 ~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~l 483 (538)
+ |.|||+ .. ....+||||||++++||+++|++|.+++... +....+ .+..+|. .. .+
T Consensus 321 ~-I~Vgg~-~~-----------~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~---~~~~~g-~y~v~C~-~~-----~~ 377 (451)
T 3qvc_A 321 D-VHFGNV-SS-----------KKANVILDSATSVITVPTEFFNQFVESASVF---KVPFLS-LYVTTCG-NT-----KL 377 (451)
T ss_dssp E-EEETTE-EE-----------EEEEEEECTTBSSEEECHHHHHHHHTTTTCE---ECTTSS-CEEEETT-CT-----TC
T ss_pred E-EEECCc-cC-----------CCceEEEeCCCccccCCHHHHHHHHHHcCCe---ecCCCC-eEEeeCC-cC-----cC
Confidence 9 999998 11 2468999999999999999999987665322 111122 3456998 33 58
Q ss_pred ceEEEEEecCeEEEeCCCccEEEecC-CCcEEEE-EEecCC-CCceEecHhhhceeeC
Q 041228 484 PEFGIQFADGGVWNFPVENYFIRLDP-EDVVCLA-ILGTPR-SALSIIGNYQQQNFHI 538 (538)
Q Consensus 484 P~I~f~F~gg~~~~lp~~~yl~~~~~-~~~~Cla-f~~~~~-~~~~IiGn~~qq~~~V 538 (538)
|+|+|+| +|++++||+++|+++... ++..|+. |.+... ...||||+.|||++||
T Consensus 378 P~itf~f-gg~~i~lp~~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~Yv 434 (451)
T 3qvc_A 378 PTLEYRS-PNKVYTLEPKQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFT 434 (451)
T ss_dssp CCEEEEE-TTEEEEECHHHHEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEE
T ss_pred CcEEEEE-CCEEEEEcHHHheeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEE
Confidence 9999999 799999999999998652 3578985 766542 5689999999999985
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=3e-45 Score=379.93 Aligned_cols=285 Identities=20% Similarity=0.279 Sum_probs=225.0
Q ss_pred eeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCC
Q 041228 179 ATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSP 258 (538)
Q Consensus 179 ~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~ 258 (538)
.||.. ...+|+++|.||||+|++.|+|||||+++||+|. +.|||++|+++.
T Consensus 5 ~~l~n----~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~----------~~y~~s~Ss~~~--------------- 55 (340)
T 1wkr_A 5 VPATN----QLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD----------KSYVKTSTSSAT--------------- 55 (340)
T ss_dssp EEEEE----CSSCEEEEEEETTTTEEEEEEEETTCCCCEECSS----------SCCCCCTTCEEE---------------
T ss_pred Eeeec----cCcEEEEEEEECCCCcEEEEEEeCCChhheecCC----------CccCCcCCcccc---------------
Confidence 46664 2468999999999999999999999999999875 479999887542
Q ss_pred CCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCccCcceeecccCCCCC
Q 041228 259 DPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPLS 338 (538)
Q Consensus 259 ~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~~~dGILGLg~~~lS 338 (538)
.|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||++...+ |...+||||||++.++
T Consensus 56 -----------~~~~~i~Yg~Gs-~~G~~~~Dtv~~g---------~~~v~~~~fg~~~~~~~-~~~~~GilGLg~~~~s 113 (340)
T 1wkr_A 56 -----------SDKVSVTYGSGS-FSGTEYTDTVTLG---------SLTIPKQSIGVASRDSG-FDGVDGILGVGPVDLT 113 (340)
T ss_dssp -----------EEEEEEECSSCE-EEEEEEEEEEEET---------TEEEEEEEEEEEEEEES-CTTCSEEEECSCGGGG
T ss_pred -----------CceEEEEECCcE-EEEEEEEEEEEEC---------CEEEcceEEEEEEccCC-CcCCCcEEECCccccc
Confidence 378999999997 8999999999998 57899999999999877 5678999999998776
Q ss_pred h--------------hhHH--hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEE
Q 041228 339 F--------------SSQL--QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYL 401 (538)
Q Consensus 339 l--------------~sQl--~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V 401 (538)
+ +.+| ++++. ++||+||.+..+.....|.|+|||+|+.++.+++.|+|++.++ +...||.|
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~--~~~~~w~v 191 (340)
T 1wkr_A 114 VGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTS--PASAYWGI 191 (340)
T ss_dssp TTSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSST--TGGGSSEE
T ss_pred cccccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCC--CCcceEEE
Confidence 5 2333 33454 5999999754322334699999999999999999999998642 13689999
Q ss_pred EEeeEEeCC-eeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcc
Q 041228 402 QIKSIIVGG-EVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEK 480 (538)
Q Consensus 402 ~L~gIsVgG-~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~ 480 (538)
. ++|.|++ +.+.. +..+||||||++++||+++|++|.+++.+... ...+ .+..+|....
T Consensus 192 ~-~~i~v~~~~~l~~-----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~---~~~g-~~~~~C~~~~---- 251 (340)
T 1wkr_A 192 N-QSIRYGSSTSILS-----------STAGIVDTGTTLTLIASDAFAKYKKATGAVAD---NNTG-LLRLTTAQYA---- 251 (340)
T ss_dssp E-EEEEETTTEEEEE-----------EEEEEECTTBCSEEECHHHHHHHHHHHTCEEC---TTTS-SEEECHHHHH----
T ss_pred E-eeEEECCCeEccC-----------CCeEEEeCCcccccCCHHHHHHHHHhhCCEEc---CCCC-eEEeeccccc----
Confidence 9 9999998 77641 25899999999999999999998776643321 1122 2346898644
Q ss_pred cccceEEEEEecCeEEEeCCCccEEEecC------CCcEEE-EEEecC----CCCceEecHhhhceeeC
Q 041228 481 MELPEFGIQFADGGVWNFPVENYFIRLDP------EDVVCL-AILGTP----RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 481 ~~lP~I~f~F~gg~~~~lp~~~yl~~~~~------~~~~Cl-af~~~~----~~~~~IiGn~~qq~~~V 538 (538)
.+|+|.|+| +|++|+|++++|+++... ....|+ +|.+.. .+..||||+.|||++||
T Consensus 252 -~~p~i~f~f-~g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~ 318 (340)
T 1wkr_A 252 -NLQSLFFTI-GGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYS 318 (340)
T ss_dssp -TCCCEEEEE-TTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEE
T ss_pred -cCCcEEEEE-CCEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEE
Confidence 489999999 789999999999987531 124675 576532 23469999999999985
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=5.9e-41 Score=332.10 Aligned_cols=221 Identities=24% Similarity=0.360 Sum_probs=185.6
Q ss_pred eeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC---CCcCCCCCCCCCCCCCcccccccCCccCCCC
Q 041228 179 ATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY---DCFEQNGPHYDPKDSSSFKNISCHDPRCHLV 255 (538)
Q Consensus 179 ~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~---~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~ 255 (538)
.||. ...+++|+++|.||||+|+|.|+|||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 5 ~~l~---n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~--------- 70 (239)
T 1b5f_A 5 VALT---NDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAH--SMYESSDSSTYKENG--------- 70 (239)
T ss_dssp EEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTS--CCBCGGGCTTCEEEE---------
T ss_pred eeee---ecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCC--CCCCCccCCCeeeCC---------
Confidence 4565 356789999999999999999999999999999999996 57654 799999999998764
Q ss_pred CCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCC-c--cCcceeecc
Q 041228 256 SSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGL-F--HGAAGLLGL 332 (538)
Q Consensus 256 ~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~-f--~~~dGILGL 332 (538)
|.|.+.|++|+ +.|.++.|+|+|+ +..++++.|||+....+. | ..++|||||
T Consensus 71 ---------------~~~~i~Yg~Gs-~~G~~~~D~v~~g---------~~~v~~~~fg~~~~~~~~~f~~~~~~GilGL 125 (239)
T 1b5f_A 71 ---------------TFGAIIYGTGS-ITGFFSQDSVTIG---------DLVVKEQDFIEATDEADNVFLHRLFDGILGL 125 (239)
T ss_dssp ---------------EEEEEECSSCE-EEEEEEEEEEEET---------TEEEEEEEEEEEEEECHHHHTTCSCCEEEEC
T ss_pred ---------------cEEEEEECCCc-EEEEEEEEEEEEC---------CcEEccEEEEEEEeccCccccccCcceEEec
Confidence 67999999997 7899999999998 568999999999987652 3 367999999
Q ss_pred cCCCCChh--hHH--hhhc-cCceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEE
Q 041228 333 GRGPLSFS--SQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSII 407 (538)
Q Consensus 333 g~~~lSl~--sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIs 407 (538)
|++.++.+ .+| ++++ .++|||||.+... ....|.|+|||+|+.++.+++.|+|+. ...||.|.|++|.
T Consensus 126 g~~~~s~p~~~~l~~qg~i~~~~FS~~l~~~~~-~~~~G~l~fGg~d~~~~~g~l~~~p~~------~~~~~~v~l~~i~ 198 (239)
T 1b5f_A 126 SFQTISVPVWYNMLNQGLVKERRFSFWLNRNVD-EEEGGELVFGGLDPNHFRGDHTYVPVT------YQYYWQFGIGDVL 198 (239)
T ss_dssp SCCSSSCCHHHHHHHTTCCSSSEEEEEECCSCS-SSCCEEEEETSCCGGGEEEEEEEEEEE------EETTEEEEECCEE
T ss_pred CccccccHHHHHHHHCCCCCCCEEEEEEeCCCC-CCCCeEEEECCcChhhccCceEEEEcc------cCCeEEEEeeEEE
Confidence 99998843 334 3444 4699999976422 234699999999999999999999998 3579999999999
Q ss_pred eCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHH
Q 041228 408 VGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAF 453 (538)
Q Consensus 408 VgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af 453 (538)
|+|+.+.++. .+..+||||||++++||+++|++|.++|
T Consensus 199 v~~~~~~~~~--------~~~~aiiDTGTt~~~lP~~~~~~i~~~i 236 (239)
T 1b5f_A 199 IGDKSTGFCA--------PGCQAFADSGTSLLSGPTAIVTQINHAI 236 (239)
T ss_dssp ETTEECCTTT--------TCEEEEECTTCSSEEECHHHHHHHHHHT
T ss_pred ECCEEecccC--------CCCEEEEecCcchhhCCHHHHHHHHHHh
Confidence 9999876532 2468999999999999999999987765
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=99.97 E-value=1.3e-30 Score=257.28 Aligned_cols=207 Identities=21% Similarity=0.388 Sum_probs=163.1
Q ss_pred CeeEeeeEEEEEEeccCC-cc--CcceeecccCCCCCh------hhHH--hhhc-cCceEEEecCCCCCCCCCcceEecC
Q 041228 305 FRQVENVMFGCGHWNRGL-FH--GAAGLLGLGRGPLSF------SSQL--QSLY-GHSFSYCLVDRNSDTNVSSKLIFGE 372 (538)
Q Consensus 305 ~~~v~~~~FGc~~~~~g~-f~--~~dGILGLg~~~lSl------~sQl--~~~~-~~~FSycL~~~~~~~~~~G~LtfGg 372 (538)
+.+++++.|||++.+.+. |. ..+||||||++.++. ..+| ++++ .++||+||.+.... ...|.|+|||
T Consensus 2 g~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~-~~~G~l~fGg 80 (241)
T 1lya_B 2 GVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDA-QPGGELMLGG 80 (241)
T ss_dssp CEEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTC-SSCEEEEETS
T ss_pred CeEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCC-CCCcEEEECC
Confidence 468999999999998774 32 579999999987764 3455 3344 46999999765322 2369999999
Q ss_pred CCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHH
Q 041228 373 DKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQA 452 (538)
Q Consensus 373 ~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~a 452 (538)
+|+.++.+++.|+|+. ...||.|.|++|+|+++.+.. ..+..+||||||++++||+++|++|.++
T Consensus 81 ~d~~~~~g~l~~~p~~------~~~~~~v~l~~i~v~~~~~~~---------~~~~~aiiDSGTt~~~lP~~~~~~l~~~ 145 (241)
T 1lya_B 81 TDSKYYKGSLSYLNVT------RKAYWQVHLDQVEVASGLTLC---------KEGCEAIVDTGTSLMVGPVDEVRELQKA 145 (241)
T ss_dssp CCGGGEEEEEEEEECS------SBTTBEEEEEEEEETTSCEES---------TTCEEEEECTTCSSEEECHHHHHHHHHH
T ss_pred cCHHHcCCceEEEECc------cccEEEEEEeEEEECCeeEec---------cCCCEEEEECCCccccCCHHHHHHHHHH
Confidence 9999999999999998 357999999999999976521 2346899999999999999999998877
Q ss_pred HHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEEEeCCCccEEEecCC-CcEEEE-EEecC----CCCce
Q 041228 453 FMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPE-DVVCLA-ILGTP----RSALS 526 (538)
Q Consensus 453 f~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~~-~~~Cla-f~~~~----~~~~~ 526 (538)
+.+. ....+. +..+|++.. .+|+|+|+| +|++|+||+++|+++.... +..|+. |.+.. ....|
T Consensus 146 ~~~~----~~~~g~-~~~~C~~~~-----~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 214 (241)
T 1lya_B 146 IGAV----PLIQGE-YMIPCEKVS-----TLPAITLKL-GGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLW 214 (241)
T ss_dssp HTCE----EEETTE-EEEEGGGGG-----GSCCEEEEE-TTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCE
T ss_pred hCCe----eccCCc-EEEECCCCc-----cCCeEEEEE-CCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeE
Confidence 6432 112232 346899765 589999999 8999999999999987532 468995 87652 35689
Q ss_pred EecHhhhceeeC
Q 041228 527 IIGNYQQQNFHI 538 (538)
Q Consensus 527 IiGn~~qq~~~V 538 (538)
|||+.|||++||
T Consensus 215 ilG~~fl~~~y~ 226 (241)
T 1lya_B 215 ILGDVFIGRYYT 226 (241)
T ss_dssp EECHHHHTTEEE
T ss_pred EechHHhcceEE
Confidence 999999999985
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.85 E-value=1.7e-21 Score=166.76 Aligned_cols=88 Identities=25% Similarity=0.563 Sum_probs=78.7
Q ss_pred eeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCC----CCcCCCCCCCCCCCCCcccccccCCccCC
Q 041228 178 VATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCY----DCFEQNGPHYDPKDSSSFKNISCHDPRCH 253 (538)
Q Consensus 178 ~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~----~C~~q~~~~FdPs~SSTy~~~~C~s~~C~ 253 (538)
..||. ...+.+|+++|.||||+|+|.|+|||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 4 ~~~l~---n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~--~~~y~p~~SsT~~~~~------- 71 (97)
T 1lya_A 4 PEVLK---NYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWI--HHKYNSDKSSTYVKNG------- 71 (97)
T ss_dssp EEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHT--SCCBCGGGCTTCEEEE-------
T ss_pred eEeeE---ECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCC--CCCCCchhCCCceeCC-------
Confidence 35665 357789999999999999999999999999999999997 6865 4899999999998764
Q ss_pred CCCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEc
Q 041228 254 LVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVN 295 (538)
Q Consensus 254 ~~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~ 295 (538)
|.|.+.|++|+ +.|.++.|+|+|+
T Consensus 72 -----------------~~~~i~Yg~Gs-~~G~~~~Dtv~i~ 95 (97)
T 1lya_A 72 -----------------TSFDIHYGSGS-LSGYLSQDTVSVP 95 (97)
T ss_dssp -----------------EEEEEECSSCE-EEEEEEEEEEEES
T ss_pred -----------------CcEEEEECCcE-EEEEEEEEEEEEC
Confidence 78999999997 8999999999997
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=98.78 E-value=5.2e-09 Score=86.90 Aligned_cols=64 Identities=17% Similarity=0.441 Sum_probs=52.0
Q ss_pred eecccCCCCCcccccceEEEEEecCeEEEeCCCccEEEecCC-CcEEEE-EEecC---CCCceEecHhhhceeeC
Q 041228 469 LDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPE-DVVCLA-ILGTP---RSALSIIGNYQQQNFHI 538 (538)
Q Consensus 469 ld~C~~~s~~~~~~lP~I~f~F~gg~~~~lp~~~yl~~~~~~-~~~Cla-f~~~~---~~~~~IiGn~~qq~~~V 538 (538)
..+|.... .+|+|+|+| ||++++|++++|+++.... ...|+. |++.. ..+.||||++|||++||
T Consensus 4 ~v~C~~~~-----~~P~i~f~~-gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~ 72 (87)
T 1b5f_B 4 QVDCNTLS-----SMPNVSFTI-GGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHT 72 (87)
T ss_dssp EECGGGGG-----GCCCEEEEE-TTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEE
T ss_pred EEECCCCC-----cCCcEEEEE-CCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEE
Confidence 45898755 589999999 7999999999999987532 368995 77642 35689999999999985
No 38
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=72.12 E-value=3.3 Score=34.99 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.9
Q ss_pred EEEEEEeCCCCceeeEEEecCCCceeEE
Q 041228 192 YFMDVFVGTPPKHYYFILDTGSDLNWIQ 219 (538)
Q Consensus 192 Y~v~I~IGTP~q~~~li~DTGS~~tWV~ 219 (538)
-+++|.||. |.+.+++|||.|+|-+.
T Consensus 9 P~v~v~I~G--q~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 9 PTTIVLIND--TPLNVLLDTGADTSVLT 34 (104)
T ss_dssp CEEEEEETT--EEEEEEECTTCSSCEEE
T ss_pred CEEEEEECC--EEEEEEeccCCCcEEEc
Confidence 357789997 99999999999999887
No 39
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=70.17 E-value=3.8 Score=34.37 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.3
Q ss_pred EEEEEeCCCCceeeEEEecCCCceeEECC
Q 041228 193 FMDVFVGTPPKHYYFILDTGSDLNWIQCV 221 (538)
Q Consensus 193 ~v~I~IGTP~q~~~li~DTGS~~tWV~c~ 221 (538)
+++|.||. |.+.+++|||.|++-+.-.
T Consensus 10 ~vtvkI~G--q~~eaLLDTGAD~TVl~~~ 36 (99)
T 2hs1_A 10 LVTIKIGG--QLKEALLDTGADDTIIEEM 36 (99)
T ss_dssp EEEEEETT--EEEEEEECTTCSSEEESCC
T ss_pred EEEEEECC--EEEEEEeccCCCcEEEecc
Confidence 56789997 9999999999999988644
No 40
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=60.80 E-value=7.4 Score=33.50 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=24.9
Q ss_pred EEEEEeC---CCCceeeEEEecCCCceeEECCCC
Q 041228 193 FMDVFVG---TPPKHYYFILDTGSDLNWIQCVPC 223 (538)
Q Consensus 193 ~v~I~IG---TP~q~~~li~DTGS~~tWV~c~~C 223 (538)
.++|.|| +|+|.+..++|||-|+|-+.-..+
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~l 45 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALF 45 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGS
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccC
Confidence 3455555 789999999999999999986554
No 41
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=60.62 E-value=6.4 Score=34.57 Aligned_cols=31 Identities=10% Similarity=0.195 Sum_probs=26.5
Q ss_pred CCeeEEEEEEeCCCCceeeEEEecCCCceeEEC
Q 041228 188 GAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQC 220 (538)
Q Consensus 188 g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c 220 (538)
..+.|++++.|+. +++.++||||++.+-+.-
T Consensus 23 ~~~~~~v~v~InG--~~~~~LvDTGAs~s~is~ 53 (148)
T 2i1a_A 23 QVPMLYINIEINN--YPVKAFVDTGAQTTIMST 53 (148)
T ss_dssp CCCCCEEEEEETT--EEEEEEECTTCSSCEEEH
T ss_pred ccceEEEEEEECC--EEEEEEEECCCCccccCH
Confidence 4567999999987 899999999999988753
No 42
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=60.56 E-value=7.3 Score=32.65 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=23.2
Q ss_pred EEEEEeCCCCceeeEEEecCCCceeEECC
Q 041228 193 FMDVFVGTPPKHYYFILDTGSDLNWIQCV 221 (538)
Q Consensus 193 ~v~I~IGTP~q~~~li~DTGS~~tWV~c~ 221 (538)
+++|.||. |.+.+++|||.|++-+.-.
T Consensus 10 ~vti~I~G--q~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 10 VVTAYIEG--QPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp EEEEEETT--EEEEEEECTTCSSCEESSC
T ss_pred eEEEEECC--EEEEEEEecCCCceEEcCc
Confidence 56789997 9999999999999988543
No 43
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=56.53 E-value=9 Score=33.02 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=21.7
Q ss_pred EEEEEeCCCCceeeEEEecCCCceeEEC
Q 041228 193 FMDVFVGTPPKHYYFILDTGSDLNWIQC 220 (538)
Q Consensus 193 ~v~I~IGTP~q~~~li~DTGS~~tWV~c 220 (538)
++ |.||. |.+.+++|||.|++-+.-
T Consensus 16 ~v-ikI~G--q~~eaLLDTGAD~TVi~~ 40 (116)
T 2hah_A 16 IL-IFVNG--YPIKFLLDTGADITVLNR 40 (116)
T ss_dssp EE-EEETT--EEEEEEECTTCSSCEEEG
T ss_pred EE-EEECC--EEEEEEecCCCCcEEEcc
Confidence 44 89997 999999999999998864
No 44
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=46.51 E-value=15 Score=32.80 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=25.7
Q ss_pred eeEEEEEEeCCCCceeeEEEecCCCceeEECC
Q 041228 190 GEYFMDVFVGTPPKHYYFILDTGSDLNWIQCV 221 (538)
Q Consensus 190 ~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~ 221 (538)
.-|++++.|.. +++.++||||+..+.+.-.
T Consensus 23 ~~l~v~~~Ing--~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 23 TMLYINCKVNG--HPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp CCCEEEEEETT--EEEEEEECTTCSSCEEEHH
T ss_pred CEEEEEEEECC--EEEEEEEeCCCCcEeeCHH
Confidence 45899999987 8999999999999988554
No 45
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=46.25 E-value=18 Score=31.02 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=24.3
Q ss_pred EEEEEeCCCCceeeEEEecCCCceeEECCCC
Q 041228 193 FMDVFVGTPPKHYYFILDTGSDLNWIQCVPC 223 (538)
Q Consensus 193 ~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C 223 (538)
.++|.||. |.+..++|||-|++-+.-...
T Consensus 11 ~vti~I~G--q~~eaLLDTGADdTVi~~~~l 39 (114)
T 3sqf_A 11 SLTLWLDD--KMFTGLINTGADVTIIKLEDW 39 (114)
T ss_dssp EEEEEETT--EEEEEEECTTCSSCEEEGGGS
T ss_pred eEEEEECC--EEEEEEEccCCCceEEecccC
Confidence 46788887 999999999999999876543
No 46
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=40.09 E-value=23 Score=30.87 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=23.2
Q ss_pred EEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHH
Q 041228 406 IIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQII 449 (538)
Q Consensus 406 IsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al 449 (538)
+.|+|+.+ .++||||++.+.++....+.+
T Consensus 31 v~InG~~~---------------~~LvDTGAs~s~is~~~a~~l 59 (148)
T 2i1a_A 31 IEINNYPV---------------KAFVDTGAQTTIMSTRLAKKT 59 (148)
T ss_dssp EEETTEEE---------------EEEECTTCSSCEEEHHHHHHH
T ss_pred EEECCEEE---------------EEEEECCCCccccCHHHHHHc
Confidence 67898843 599999999999998766553
No 47
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=36.80 E-value=20 Score=26.47 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=15.3
Q ss_pred hhHHHHhHHHHHHHHHHHHh
Q 041228 115 VSESTIRDLTRIQALHRRII 134 (538)
Q Consensus 115 ~~~~l~rD~~R~~~i~~r~~ 134 (538)
++...+.|+.|++||++|++
T Consensus 28 ~A~~~Rwd~qRi~YLqrKia 47 (55)
T 4ds7_E 28 IAFYRRSDDNRLRILRDRIE 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhhhHHHHHHHHHHHh
Confidence 34567899999999999995
No 48
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=32.38 E-value=31 Score=30.01 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=17.4
Q ss_pred ceeeEEEecCCCceeEECCCC
Q 041228 203 KHYYFILDTGSDLNWIQCVPC 223 (538)
Q Consensus 203 q~~~li~DTGS~~tWV~c~~C 223 (538)
|.+.+++|||-|++-+.-...
T Consensus 30 q~~eaLLDTGAD~TVl~~~~l 50 (124)
T 2rsp_A 30 VYITALLDSGADITIISEEDW 50 (124)
T ss_dssp EEEEEEECTTCSSCEEETTTS
T ss_pred EEEEEEecCCCCcEEEecccC
Confidence 667999999999999876543
No 49
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=31.98 E-value=37 Score=29.79 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.1
Q ss_pred EEEEEEeCCCCceeeEEEecCCCceeEECC
Q 041228 192 YFMDVFVGTPPKHYYFILDTGSDLNWIQCV 221 (538)
Q Consensus 192 Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~ 221 (538)
-++++.|+. |.+.+++|||.+.+-+.-.
T Consensus 23 P~v~i~I~G--~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 23 PRITLKVGG--QPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SEEEEEETT--EEEEEEECTTCSSCEECSC
T ss_pred CEEEEEECC--EEEEEEEeCCCCeEEEccc
Confidence 456788887 8999999999999988544
No 50
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=29.41 E-value=40 Score=31.79 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.9
Q ss_pred EEEEEEeCCCCceeeEEEecCCCceeEE
Q 041228 192 YFMDVFVGTPPKHYYFILDTGSDLNWIQ 219 (538)
Q Consensus 192 Y~v~I~IGTP~q~~~li~DTGS~~tWV~ 219 (538)
-.++|.||. |.+.+++|||-|.+-+.
T Consensus 9 P~vtv~I~G--q~~e~LLDTGAD~TVl~ 34 (203)
T 3ka2_A 9 PLVTIRIGG--QLKEALLDTGADDTVIE 34 (203)
T ss_dssp CEEEEEETT--EEEEEEECTTCSSCEEC
T ss_pred CeEEEEECC--EEEEEEEecCCCceEEe
Confidence 367899998 99999999999999885
No 51
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=29.07 E-value=37 Score=30.09 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=18.1
Q ss_pred cEEEeccccCccCCHHHHHHH
Q 041228 429 GTIIDSGTTLSYFAEPAYQII 449 (538)
Q Consensus 429 ~aIIDSGTs~t~LP~~~y~al 449 (538)
.++||||++.+.++....+.+
T Consensus 37 ~~LVDTGAs~s~Is~~~A~rl 57 (148)
T 3s8i_A 37 KAFVDSGAQMTIMSQACAERC 57 (148)
T ss_dssp EEEECTTCSSCEEEHHHHHHT
T ss_pred EEEEeCCCCcEeeCHHHHHHc
Confidence 589999999999998777664
No 52
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=25.64 E-value=55 Score=32.24 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=23.4
Q ss_pred ccceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHH
Q 041228 395 VDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEP 444 (538)
Q Consensus 395 ~~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~ 444 (538)
....|+++ |.||.+.+ .++||||++.+++|..
T Consensus 13 ~~~~Y~~~---i~iG~Q~~---------------~v~~DTGSs~lWv~~~ 44 (323)
T 1bxo_A 13 NDEEYITP---VTIGGTTL---------------NLNFDTGSADLWVFST 44 (323)
T ss_dssp GGSCEEEE---EEETTEEE---------------EEEEETTCCCEEECBT
T ss_pred CCCEEEEE---EEECCEEE---------------EEEEeCCCcceEEecC
Confidence 34567665 67884332 5999999999999874
No 53
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=23.24 E-value=63 Score=31.88 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=23.0
Q ss_pred cceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHH
Q 041228 396 DTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEP 444 (538)
Q Consensus 396 ~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~ 444 (538)
...|+++ |.||.+. ..++||||++.+++|..
T Consensus 14 ~~~Y~~~---i~iG~q~---------------~~v~~DTGSs~lWv~~~ 44 (323)
T 1izd_A 14 DEEYITQ---VTVGDDT---------------LGLDFDTGSADLWVFSS 44 (323)
T ss_dssp GCCEEEE---EEETTEE---------------EEEEEETTCCCEEECBT
T ss_pred CCEEEEE---EEECCEE---------------EEEEEcCCCcceEEecC
Confidence 4567655 6788332 26999999999999974
No 54
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=22.22 E-value=77 Score=31.64 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHH
Q 041228 380 PNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEP 444 (538)
Q Consensus 380 g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~ 444 (538)
+.+...||... ...+|+++ |.||. |+.. ..++||||++.+++|..
T Consensus 5 g~~~~~~l~~~----~~~~Y~~~---i~iGt-----P~q~--------~~v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 5 GSVDTPGLYDF----DLEEYAIP---VSIGT-----PGQD--------FYLLFDTGSSDTWVPHK 49 (361)
T ss_dssp CCEEEEEEEET----TTTEEEEE---EEETT-----TTEE--------EEEEEETTCCCCEEEBT
T ss_pred CccceEEeecC----CCCEEEEE---EEECC-----CCcE--------EEEEEcCCCCCeEECCC
Confidence 55666788742 34567664 77884 2222 26999999999999864
Done!