BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041231
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 308 bits (788), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 191/298 (64%)
Query: 48 FYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAIVSEK 107
FY +CP IV S +Q+A+ RI ASL+RLHFHDCFV GCDAS+LLDD+ +I SEK
Sbjct: 7 FYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEK 66
Query: 108 NSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRD 167
N+ PN NS RGF V+D IK LE ACP VSC+D++ALA+ SV L+GGPSW + LGRRD
Sbjct: 67 NAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRD 126
Query: 168 SRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQRLYN 227
S TA ++ N+ F GLN DLV+LSG HT G ARC F RL+N
Sbjct: 127 SLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFN 186
Query: 228 QNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKGLLTS 287
+G PD TL T L+ +CP+ G + I+ LD ++P FDN YF + GLL S
Sbjct: 187 FSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDGLLQS 246
Query: 288 DEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNCRLVN 345
D+ L + + + +V S+A + LFF+ FAQSM+ MGNISPLTG NGE+R +C+ VN
Sbjct: 247 DQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 288 bits (738), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/302 (47%), Positives = 189/302 (62%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L FY +CP +V +++Q+A RI ASL+RLHFHDCFV GCDAS+LLD+S +I
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+SEKN+ PN NS RGF V+D IK LE ACP VSC D++ALA++ SV LSGGPSW + L
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
GRRD+ TA + N+ + F GLN DLV+LSG HT G A C F
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
RL+N +G PD TL T L+ +CP+ G + + LD ++P FDN YF + G
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNG 243
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNCRL 343
LL SD+ L + + +V S+A + LFF+ FAQSM+ MGNISPLTG +GE+R +C+
Sbjct: 244 LLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKK 303
Query: 344 VN 345
N
Sbjct: 304 TN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 286 bits (733), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 143/302 (47%), Positives = 188/302 (62%), Gaps = 9/302 (2%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L FY CP + + S + A+A++ R+ ASLLRLHFHDCFVQGCDASVLLDD++
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
EK + PN NS+RGFEVID IK+++E CP VSCADI+A+AAR SVV GG SW + L
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
GRRDS TA + LI++F +G +LV+LSG HTIG A+C F+
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
R+YN+ ++ TY L++ CP GGD N+SP D +P KFDN Y+ + KG
Sbjct: 182 RIYNE-------SNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKG 234
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNCRL 343
LL SD+ L G V Q V +Y+ + F F +M+KMGN+SPLTG +G++R NCR
Sbjct: 235 LLHSDQQLFNG-VSTDSQ-VTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRK 292
Query: 344 VN 345
N
Sbjct: 293 TN 294
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 191/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHFHDCFV GCDAS+LLD++ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGHT G +C +
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 342 RLVN 345
R+VN
Sbjct: 303 RVVN 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 282 bits (722), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/302 (48%), Positives = 193/302 (63%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY+ +CP + IV V+ A PRI ASL+RLHFHDCFVQGCD SVLL+++ I
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
SE++++PN NS+RG +V+++IK +E +CP TVSCADI+A+AA + VL GGP W +PL
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
GRRDS TA + L ASF QGLN +DLV+LSGGHT G ARC TF
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
RLYN + PD TL TY L++ CP+ +N++ LD ++P +FDN Y+ +L G
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNG 241
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNCRL 343
LL SD+ L + + + +V S++ + FF F SM+KMGNI LTG GE+R C
Sbjct: 242 LLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNF 301
Query: 344 VN 345
VN
Sbjct: 302 VN 303
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 191/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHFHDCFV GCDAS+LLD++ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGHT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + +D +P FDN Y+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQK 242
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 342 RLVN 345
R+VN
Sbjct: 303 RVVN 306
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/304 (49%), Positives = 191/304 (62%), Gaps = 8/304 (2%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P Y SCP + IV + A+ + R+AASL+RLHFHDCFV GCDAS+LLD +
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGAD-- 59
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
SEK ++PN NS RGFEVID IKA +E ACP VSCADI+ LAAR SVVLSGGP W + L
Sbjct: 60 -SEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
GR+D A + +IA F LN D+V+LSG HT G A+C F
Sbjct: 119 GRKDGLVANQNSANNLPSPFE-PLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSN 177
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
RL+N G PD TLE + L++VCP G N +PLD ++ FDN YFK +L GKG
Sbjct: 178 RLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKG 237
Query: 284 LLTSDEVLLTGD--VGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
LL+SD++L + D V +LV++Y+ LFF+ F +M++MGNIS G +GEVR NC
Sbjct: 238 LLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTNC 295
Query: 342 RLVN 345
R++N
Sbjct: 296 RVIN 299
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 281 bits (720), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 190/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHFHDCFV GCDAS+LLD++ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGHT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 342 RLVN 345
R+VN
Sbjct: 302 RVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 281 bits (719), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 190/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHFHDCFV GCDAS+LLD++ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGHT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 342 RLVN 345
R+VN
Sbjct: 303 RVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 281 bits (719), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 190/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHFHDCFV GCDAS+LLD++ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGHT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 342 RLVN 345
R+VN
Sbjct: 302 RVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 281 bits (718), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 190/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHFHDCFV GCDAS+LLD++ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGHT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 342 RLVN 345
R+VN
Sbjct: 302 RVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 281 bits (718), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 190/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHFHDCFV GCDAS+LLD++ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGHT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 342 RLVN 345
R+VN
Sbjct: 303 RVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 280 bits (717), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 190/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHFHDCFV GCDAS+LLD++ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGHT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 342 RLVN 345
R+VN
Sbjct: 303 RVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 142/304 (46%), Positives = 190/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHFHDCFV GCDAS+LLD++ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGH+ G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 342 RLVN 345
R+VN
Sbjct: 302 RVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 142/304 (46%), Positives = 189/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHFHDCFV GCDAS+LLD++ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+L GGHT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 342 RLVN 345
R+VN
Sbjct: 302 RVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/304 (46%), Positives = 189/304 (62%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+LRLHF DCFV GCDAS+LLD++ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGHT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 342 RLVN 345
R+VN
Sbjct: 303 RVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/304 (46%), Positives = 188/304 (61%), Gaps = 2/304 (0%)
Query: 44 LFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAI 103
L P FY SCP V NIV + + PRIAAS+L LHF DCFV GCDAS+LLD++ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 104 VSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPL 163
+EK++ N NS RGF VID +KA +E ACP+TVSCAD++ +AA+ SV L+GGPSW +PL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 164 GRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNE-VDLVSLSGGHTIGVARCVTFK 222
GRRDS A T+ L SF+ GLN DLV+LSGGHT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
RLYN + PD TL TY L+ +CP G + + D +P FDN Y+ + K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 283 GLLTSDEVLLTG-DVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341
GL+ SD+ L + + + + LV+S+A + FF F ++M +MGNI+PLTG G++R NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 342 RLVN 345
R+VN
Sbjct: 302 RVVN 305
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/302 (44%), Positives = 179/302 (59%), Gaps = 8/302 (2%)
Query: 48 FYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAIVSEK 107
FY SCP +++V + A A IA L+R+HFHDCFV+GCDASVLLD +A +EK
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEK 65
Query: 108 NSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRD 167
+++PN SLRGFEVI K+ +E ACPQTVSCADI+A AAR S L+G ++++P GRRD
Sbjct: 66 DAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRD 125
Query: 168 SRTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQRLYN 227
+ LI SF + L ++V+LSG H+IGVA C +F RLYN
Sbjct: 126 GTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYN 185
Query: 228 QNGNNQPDETLERTYYFGLKSVCPRTGGDNNISP----LDFASPAKFDNTYFKLVLLGKG 283
N + D TL +Y L++ CP +P LD +P+ DN Y+ V L G
Sbjct: 186 FNSGSGIDPTLSPSYAALLRNTCP--ANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLG 243
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNCRL 343
LLTSD+ L+T N+ VK+ A + + +FAQ+MVKMG I LTG GE+R NC +
Sbjct: 244 LLTSDQALVTE--ANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSV 301
Query: 344 VN 345
VN
Sbjct: 302 VN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 185/302 (61%), Gaps = 13/302 (4%)
Query: 48 FYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAIVSEK 107
FY +CP+ ++IV +Q+A+ + +AA LLRLHFHDCFVQGCDASVLLD SA E+
Sbjct: 13 FYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQ 72
Query: 108 NSVPNRNSLR--GFEVIDEIKAKLEEACP-QTVSCADIVALAARGSVVLSGGPSWELPLG 164
+ PN +LR F+ +++I+ +LE C VSC+DI+ALAAR SVV+SGGP + +PLG
Sbjct: 73 QAPPNL-TLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRVPLG 131
Query: 165 RRDSRT-AXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
RRDSR+ A VQ+L+A R GL+ DLV++SGGHTIG+A C +F+
Sbjct: 132 RRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSSFED 191
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
RL+ +PD T+ T+ LK CP G D LD +P FDN Y+ ++ +G
Sbjct: 192 RLF-----PRPDPTISPTFLSRLKRTCPAKGTDRRTV-LDVRTPNVFDNKYYIDLVNREG 245
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNCRL 343
L SD+ L T + +V+ +A+ + FF+QF S+ KMG + T GEVR+NC +
Sbjct: 246 LFVSDQDLFTNAITR--PIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSV 303
Query: 344 VN 345
N
Sbjct: 304 RN 305
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 45/214 (21%)
Query: 118 GFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXX 177
G ++ + ++E P VS AD LA +V ++GGP GR D
Sbjct: 72 GLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGRL 130
Query: 178 XXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDET 237
++++ K GL++ D+V+LSGGHTIG A
Sbjct: 131 PDATKGSDHLRDVFG--KAMGLSDQDIVALSGGHTIGAAHK------------------- 169
Query: 238 LERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK--GLL--TSDEVLLT 293
ER+ + G P T ++P FDN+YF +L G+ GLL SD+ LLT
Sbjct: 170 -ERSGFEG-----PWT-----------SNPLIFDNSYFTELLTGEKDGLLQLPSDKALLT 212
Query: 294 GDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNI 327
V LV+ YA D+++FF +A++ +K+ +
Sbjct: 213 DSV--FRPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 34/209 (16%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXX--XXXXXXXXXXXXTVQNLIASF 194
V+ AD+ LA+ ++ +GGP + GR D Q+L F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 195 KRQGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTG 254
R GLN+ ++V+LSG HT+G +R +++G +P+ + P
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRP--------DRSGWGKPETKYTKD--------GPGAP 190
Query: 255 GDNNISPLDFASPAKFDNTYFKLVLLGKGLLTSDEVLLTGDVG-----NIVQLVKSYAED 309
G + + A KFDN+YFK + K D ++L D + + YA D
Sbjct: 191 GGQSWT----AQWLKFDNSYFKDI---KERRDEDLLVLPTDAALFEDPSFKVYAEKYAAD 243
Query: 310 DELFFKQFAQSMVKMGNI----SPLTGFN 334
E FFK +A++ K+ N+ P GF+
Sbjct: 244 PEAFFKDYAEAHAKLSNLGAKFGPAEGFS 272
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 159
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A ER+ + G P T
Sbjct: 160 MGLTDQDIVALSGGHTIGAAHK--------------------ERSGFEG-----PWT--- 191
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 192 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 241
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 242 FFADYAEAHQKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 159
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A ER+ + G P T
Sbjct: 160 MGLTDQDIVALSGGHTIGAAHK--------------------ERSGFEG-----PWT--- 191
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 192 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 241
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 242 FFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 147
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A ER+ + G P T
Sbjct: 148 MGLTDQDIVALSGGHTIGAAHK--------------------ERSGFEG-----PWT--- 179
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 180 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 229
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 230 FFADYAEAHQKLSEL 244
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 159
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A ER+ + G P T
Sbjct: 160 MGLTDQDIVALSGGHTIGAAHK--------------------ERSGFEG-----PWT--- 191
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 192 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 241
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 242 FFADYAEAHQKLSEL 256
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 147
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A ER+ + G P T
Sbjct: 148 MGLTDQDIVALSGGHTIGAAHK--------------------ERSGFEG-----PWT--- 179
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 180 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 229
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 230 FFADYAEAHQKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 147
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A ER+ + G P T
Sbjct: 148 MGLTDQDIVALSGGHTIGAAHK--------------------ERSGFEG-----PWT--- 179
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 180 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 229
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 230 FFADYAEAHQKLSEL 244
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 147
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A ER+ + G P T
Sbjct: 148 MGLTDQDIVALSGGHTIGAAHK--------------------ERSGFEG-----PWT--- 179
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 180 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 229
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 230 FFADYAEAHQKLSEL 244
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 159
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A ER+ + G P T
Sbjct: 160 MGLTDQDIVALSGGHTIGAAHK--------------------ERSGFEG-----PWT--- 191
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 192 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 241
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 242 FFADYAEAHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 159
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A ER+ + G P T
Sbjct: 160 MGLTDQDIVALSGGHTIGAAHK--------------------ERSGFEG-----PWT--- 191
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 192 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 241
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 242 FFADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 159
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A ER+ + G P T
Sbjct: 160 MGLTDQDIVALSGGHTIGAAHK--------------------ERSGFEG-----PWT--- 191
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 192 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 241
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 242 FFADYAEAHQKLSEL 256
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 82/195 (42%), Gaps = 44/195 (22%)
Query: 137 VSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQNLIASFKR 196
+S AD LA +V ++GGP GR D ++++ K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG--KA 159
Query: 197 QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGD 256
GL + D+V+LSGGHTIG A E + + G P T
Sbjct: 160 MGLTDQDIVALSGGHTIGAAHK--------------------EASGFEG-----PWT--- 191
Query: 257 NNISPLDFASPAKFDNTYFKLVLLG--KGL--LTSDEVLLTGDVGNIVQLVKSYAEDDEL 312
++P FDN+YF +L G +GL L SD+ LL+ V LV YA D++
Sbjct: 192 --------SNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPV--FRPLVDKYAADEDA 241
Query: 313 FFKQFAQSMVKMGNI 327
FF +A++ K+ +
Sbjct: 242 FFADYAEAHQKLSEL 256
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 113/293 (38%), Gaps = 79/293 (26%)
Query: 64 LQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAIVSEKNSVPNRNSLR------ 117
++ I+ + + SL+RL +H+ C +K+ PN S+R
Sbjct: 16 IEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFKPECL 62
Query: 118 -----GFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAX 172
G ++ + L++ PQ +S AD+ LAA ++ GGP+ GR D++
Sbjct: 63 YAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGS 121
Query: 173 XXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNN 232
T ++ F+R G N+ + V+L G HT G
Sbjct: 122 VCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG------------------ 163
Query: 233 QPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKGLL------- 285
+ +E + Y G P T N FDN++F +L +L
Sbjct: 164 --ETHIEFSGYHG-----PWTHDKNG-----------FDNSFFTQLLDEDWVLNPKVEQM 205
Query: 286 ------TSDEVLLTGDVGNIV-----QLVKSYAEDDELFFKQFAQSMVKMGNI 327
T+ ++L DV ++ + V+ YA+D++ F K FA + K+ +
Sbjct: 206 QLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 112/293 (38%), Gaps = 79/293 (26%)
Query: 64 LQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAIVSEKNSVPNRNSLR------ 117
++ I+ + + SL+RL +H+ C +K+ PN S+R
Sbjct: 15 IEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFKPECL 61
Query: 118 -----GFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAX 172
G ++ + L++ PQ +S AD+ LAA ++ GGP+ GR D++
Sbjct: 62 YAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGS 120
Query: 173 XXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNN 232
T ++ F+R G N+ + V+L G HT G
Sbjct: 121 VCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECH--------------- 165
Query: 233 QPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKGLL------- 285
+E + Y G P T N FDN++F +L +L
Sbjct: 166 -----IEFSGYHG-----PWTHDKNG-----------FDNSFFTQLLDEDWVLNPKVEQM 204
Query: 286 ------TSDEVLLTGDVGNIV-----QLVKSYAEDDELFFKQFAQSMVKMGNI 327
T+ ++L DV ++ + V+ YA+D++ F K FA + K+ +
Sbjct: 205 QLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 112/293 (38%), Gaps = 79/293 (26%)
Query: 64 LQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAIVSEKNSVPNRNSLR------ 117
++ I+ + + SL+RL +H+ C +K+ PN S+R
Sbjct: 16 IEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFKPECL 62
Query: 118 -----GFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAX 172
G ++ + L++ PQ +S AD+ LAA ++ GGP+ GR D++
Sbjct: 63 YAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGS 121
Query: 173 XXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNN 232
T ++ F+R G N+ + V+L G HT G
Sbjct: 122 VCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECH--------------- 166
Query: 233 QPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKGLL------- 285
+E + Y G P T N FDN++F +L +L
Sbjct: 167 -----IEFSGYHG-----PWTHDKNG-----------FDNSFFTQLLDEDWVLNPKVEQM 205
Query: 286 ------TSDEVLLTGDVGNIV-----QLVKSYAEDDELFFKQFAQSMVKMGNI 327
T+ ++L DV ++ + V+ YA+D++ F K FA + K+ +
Sbjct: 206 QLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 80/222 (36%), Gaps = 31/222 (13%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G HT+G K
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTF---FQRLNMNDREVVALMGAHTLGKTHL---KN 184
Query: 224 RLYNQNGNNQPDETLERTYYFGL-KSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
Y P+ + ++Y L D N D S G
Sbjct: 185 SGYEGPWTANPN-VFDNSFYLNLLNEDWKLEKNDANNEQWDSKS--------------GY 229
Query: 283 GLLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
+L +D L+ + +VK YA D + FFK F+++ K+
Sbjct: 230 MMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 81/225 (36%), Gaps = 37/225 (16%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G HT+G K
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTF---FQRLNMNDREVVALMGAHTLG-------KT 180
Query: 224 RLYNQNGNNQPDET---LERTYYFGL-KSVCPRTGGDNNISPLDFASPAKFDNTYFKLVL 279
L N D T + ++Y L D N D S
Sbjct: 181 HLKNSGYEGPWDATNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKS------------- 227
Query: 280 LGKGLLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
G +L +D L+ + +VK YA D + FFK F+++ K+
Sbjct: 228 -GYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 31/222 (13%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCV-TFK 222
D+ T V+ F+R +N+ ++V+LSG HT+G +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTF---FQRLNMNDREVVALSGAHTLGKTHLKNSGY 187
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
+ + N N + ++Y L + D + D A+ ++D+ L L
Sbjct: 188 EGPWTANNN-----VFDNSFYLNLLNE------DWKLEKND-ANNEQWDSKSGYLQLPTD 235
Query: 283 GLLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
L D L+ +VK YA D + FFK F+++ K+
Sbjct: 236 YSLIQDPKYLS--------IVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 33/223 (14%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCV-TFK 222
D+ T V+ F+R +N+ ++V+L G HT+G +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTF---FQRLNMNDREVVALMGAHTLGKTHLKNSGY 187
Query: 223 QRLYNQNGNNQPDETLERTYYFGL-KSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLG 281
+ + N N + ++Y L D N D S G
Sbjct: 188 EGPWTANNN-----VFDNSFYLNLLNEDWKLEKNDANNEQWDSKS--------------G 228
Query: 282 KGLLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
+L +D L+ + +VK YA D + FFK F+++ K+
Sbjct: 229 YMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 82/221 (37%), Gaps = 31/221 (14%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G H +G K
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTF---FQRLNMNDREVVALMGAHALGKTHL---KN 181
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
Y G N +Y L + D + D A+ ++D+ ++L
Sbjct: 182 SGYEGGGANN---VFTNEFYLNLLNE------DWKLEKND-ANNEQWDSKSGYMMLPTDY 231
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
L D L+ +VK YA D + FFK F+++ K+
Sbjct: 232 SLIQDPKYLS--------IVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 82/221 (37%), Gaps = 31/221 (14%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 74 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 128
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G H +G K
Sbjct: 129 VDTPEDTTPDNGRLPDADKDAGYVRTF---FQRLNMNDREVVALMGAHALGKTHL---KN 182
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
Y G N +Y L + D + D A+ ++D+ ++L
Sbjct: 183 SGYEGGGANN---VFTNEFYLNLLNE------DWKLEKND-ANNEQWDSKSGYMMLPTDY 232
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
L D L+ +VK YA D + FFK F+++ K+
Sbjct: 233 SLIQDPKYLS--------IVKEYANDQDKFFKDFSKAFEKL 265
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 82/221 (37%), Gaps = 31/221 (14%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 79 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 133
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G H +G K
Sbjct: 134 VDTPEDTTPDNGRLPDADKDAGYVRTF---FQRLNMNDREVVALMGAHALGKTHL---KN 187
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
Y G N +Y L + D + D A+ ++D+ ++L
Sbjct: 188 SGYEGGGANN---VFTNEFYLNLLNE------DWKLEKND-ANNEQWDSKSGYMMLPTDY 237
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
L D L+ +VK YA D + FFK F+++ K+
Sbjct: 238 SLIQDPKYLS--------IVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 31/222 (13%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCV-TFK 222
D+ T V+ F+R +N+ ++V+L G HT+G +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTF---FQRLNMNDREVVALMGAHTLGKTHLKNSGY 187
Query: 223 QRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282
+ + N N + ++Y L + D + D A+ ++D+ L L
Sbjct: 188 EGPWTANNN-----VFDNSFYLNLLNE------DWKLEKND-ANNEQWDSKSGYLQLPTD 235
Query: 283 GLLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
L D L+ +VK YA D + FFK F+++ K+
Sbjct: 236 YSLIQDPKYLS--------IVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 64 LQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAIVSEKNSVPNRNSLRGFEVI- 122
LQ+ I+ + A SL LH D F+ D++ + + ++ +V R +GFEV+
Sbjct: 158 LQEGISYE---ACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKXRFEAQGFEVLS 214
Query: 123 ------DEIKAKLEEACPQTVSCADIVALA-ARGSVVLSGG-PSWELPLGRRDSRTA 171
+EI LE+A T C I A+G+ L G S PLG + A
Sbjct: 215 INGHDYEEINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKA 271
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 64 LQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAIVSEKNSVPNRNSLRGFEVI- 122
LQ+ I+ + A SL LH D F+ D++ + + ++ +V R +GFEV+
Sbjct: 155 LQEGISYE---ACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKXRFEAQGFEVLS 211
Query: 123 ------DEIKAKLEEACPQTVSCADIVALA-ARGSVVLSGG-PSWELPLGRRDSRTA 171
+EI LE+A T C I A+G+ L G S PLG + A
Sbjct: 212 INGHDYEEINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKA 268
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 29/221 (13%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 132
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G H +G K
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGYVRTF---FQRLNMNDREVVALMGAHALGKTHL---KN 186
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
Y G + Y L D N D S G
Sbjct: 187 SGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYM 232
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
+L +D L+ + +VK YA D + FFK F+++ K+
Sbjct: 233 MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 29/221 (13%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 74 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 128
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G H +G K
Sbjct: 129 VDTPEDTTPDNGRLPDADKDAGYVRTF---FQRLNMNDREVVALMGAHALGKTHL---KN 182
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
Y G + Y L D N D S G
Sbjct: 183 SGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYM 228
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
+L +D L+ + +VK YA D + FFK F+++ K+
Sbjct: 229 MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 29/221 (13%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G H +G K
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGYVRTF---FQRLNMNDREVVALMGAHALGKTHL---KN 184
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
Y G + Y L D N D S G
Sbjct: 185 SGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYM 230
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
+L +D L+ + +VK YA D + FFK F+++ K+
Sbjct: 231 MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 29/221 (13%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G H +G K
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGYVRTF---FQRLNMNDREVVALMGAHALGKTHL---KN 184
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
Y G + Y L D N D S G
Sbjct: 185 SGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYM 230
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
+L +D L+ + +VK YA D + FFK F+++ K+
Sbjct: 231 MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 29/221 (13%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G H +G K
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTF---FQRLNMNDREVVALMGAHALGKTHL---KN 181
Query: 224 RLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG 283
Y G + Y L D N D S G
Sbjct: 182 SGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYM 227
Query: 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
+L +D L+ + +VK YA D + FFK F+++ K+
Sbjct: 228 MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 55/147 (37%), Gaps = 23/147 (15%)
Query: 79 LRLHFHDCFV-------QGCDASVLLDDSAAIVSEKNSVPNRNSLRGFEVIDEI-KAKLE 130
LRL FHD G D S++ D+ E N N IDEI A+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----ETNFPANAG-------IDEIVSAQKP 90
Query: 131 EACPQTVSCADIVALA-ARGSVVLSGGPSWELPLGRRDSRTAXXXXXXXXXXXXXXTVQN 189
+S D + A A G GG LGR D+ A +V +
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDS 147
Query: 190 LIASFKRQGLNEVDLVSLSGGHTIGVA 216
++A G + V++VSL H+I A
Sbjct: 148 ILARMGDAGFSPVEVVSLLASHSIAAA 174
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 85/225 (37%), Gaps = 37/225 (16%)
Query: 106 EKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGR 165
E N N GF+ ++ I + +S D+ +L +V GP GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 127
Query: 166 RDS--RTAXXXXXXXXXXXXXXTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARCVTFKQ 223
D+ T V+ F+R +N+ ++V+L G H +G K
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTF---FQRLNMNDREVVALMGAHALG-------KT 177
Query: 224 RLYNQNGNNQP----DETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVL 279
L N +G P + YY L + D + D A+ ++D+ ++L
Sbjct: 178 HLKN-SGYEGPWGAANNVFTNEYYLNLLNE------DWKLEKND-ANNEQWDSKSGYMML 229
Query: 280 LGKGLLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM 324
L D L+ +VK YA D + FFK F+++ K+
Sbjct: 230 PTDYSLIQDPKYLS--------IVKEYANDQDKFFKDFSKAFEKL 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,402,728
Number of Sequences: 62578
Number of extensions: 325657
Number of successful extensions: 950
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 176
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)