Query 041231
Match_columns 345
No_of_seqs 193 out of 1332
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 9E-106 2E-110 773.5 26.1 298 41-345 22-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1E-100 3E-105 735.4 26.6 298 43-344 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 9.4E-72 2E-76 518.7 9.5 229 60-309 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 4.9E-69 1.1E-73 511.9 22.4 231 58-341 15-256 (289)
5 cd00691 ascorbate_peroxidase A 100.0 1.8E-66 3.9E-71 488.8 20.9 231 55-331 11-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 4.8E-65 1E-69 477.7 21.8 232 46-330 3-248 (250)
7 PLN02879 L-ascorbate peroxidas 100.0 5.5E-63 1.2E-67 463.1 21.4 219 59-330 19-248 (251)
8 cd00692 ligninase Ligninase an 100.0 8E-63 1.7E-67 476.9 22.4 236 56-345 16-287 (328)
9 cd00314 plant_peroxidase_like 100.0 6E-59 1.3E-63 438.3 18.9 224 59-326 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 2.9E-56 6.3E-61 437.9 19.8 259 58-335 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 4E-53 8.7E-58 439.1 20.1 254 58-331 55-404 (716)
12 cd08201 plant_peroxidase_like_ 100.0 8.7E-52 1.9E-56 387.5 9.0 245 31-326 1-264 (264)
13 PRK15061 catalase/hydroperoxid 100.0 7.5E-50 1.6E-54 412.7 20.8 265 49-332 47-411 (726)
14 cd08200 catalase_peroxidase_2 100.0 1.9E-39 4.1E-44 307.8 18.0 220 62-328 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.9E-34 4.1E-39 300.0 19.4 216 64-329 437-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 6.6E-34 1.4E-38 294.6 18.5 221 62-329 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 5.3E-29 1.2E-33 247.9 17.7 251 59-328 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.4 1.4E-12 3E-17 131.4 14.4 216 62-328 452-725 (730)
19 PTZ00411 transaldolase-like pr 56.2 74 0.0016 31.7 9.1 48 154-201 180-230 (333)
20 PF11895 DUF3415: Domain of un 50.0 14 0.0003 29.2 2.3 19 312-330 2-20 (80)
21 TIGR00874 talAB transaldolase. 38.3 2E+02 0.0043 28.5 8.8 51 152-202 166-219 (317)
22 PRK05269 transaldolase B; Prov 35.9 1.8E+02 0.0039 28.7 8.2 50 153-202 169-221 (318)
23 PF13956 Ibs_toxin: Toxin Ibs, 34.8 17 0.00037 20.8 0.5 14 4-17 2-15 (19)
24 PRK12309 transaldolase/EF-hand 32.2 2.9E+02 0.0064 28.1 9.2 64 137-201 155-224 (391)
25 PRK14758 hypothetical protein; 21.0 1.2E+02 0.0027 18.9 2.5 20 3-22 4-26 (27)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=8.8e-106 Score=773.45 Aligned_cols=298 Identities=43% Similarity=0.750 Sum_probs=283.5
Q ss_pred ccCcccccccCCChhHHHHHHHHHHHHHHhCCCcchhhHHhhhccccccCCCceeecCCCcccccccCCCCCCCchhhHH
Q 041231 41 FYGLFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAIVSEKNSVPNRNSLRGFE 120 (345)
Q Consensus 41 ~~~L~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~GCDgSill~~~~~~~~E~~~~~N~~~l~g~~ 120 (345)
..+|+++||++|||++|+||++.|++++.+||+++|++|||+||||||+||||||||+++ .+||++++|. +++||+
T Consensus 22 ~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~-~l~Gf~ 97 (324)
T PLN03030 22 GQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNL-LLRGYD 97 (324)
T ss_pred hccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCc-CcchHH
Confidence 346999999999999999999999999999999999999999999999999999999865 3699999998 789999
Q ss_pred HHHHHHHHHHhhCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcccCCCCCCCCCCCCCHHHHHHHHHHcCCC
Q 041231 121 VIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTASLSGSNSNIPPPNSTVQNLIASFKRQGLN 200 (345)
Q Consensus 121 ~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls 200 (345)
+|+.||++||++||++|||||||+|||||||+++|||.|+|++||||+++|.+.++. +||.|+.++++|++.|+++||+
T Consensus 98 ~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~ 176 (324)
T PLN03030 98 VIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLN 176 (324)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999877775 8999999999999999999999
Q ss_pred ccccccccccceeccccccccccccccCCCCC-CCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHh
Q 041231 201 EVDLVSLSGGHTIGVARCVTFKQRLYNQNGNN-QPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVL 279 (345)
Q Consensus 201 ~~dlVaLsGaHTiG~ahc~~f~~Rl~~~~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~ 279 (345)
.+|||+||||||||++||.+|.+|||||.|++ .+||+||+.|++.|++.||..++++..++||+.||.+|||+||+||+
T Consensus 177 ~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll 256 (324)
T PLN03030 177 TQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLK 256 (324)
T ss_pred HHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHH
Confidence 99999999999999999999999999999875 58999999999999999996433345789999999999999999999
Q ss_pred hcCcccccchhhccCchhhHHHHHHHHhhCH----HHHHHHHHHHHHHhhcCCCCCCCCCccccccccCC
Q 041231 280 LGKGLLTSDEVLLTGDVGNIVQLVKSYAEDD----ELFFKQFAQSMVKMGNISPLTGFNGEVRKNCRLVN 345 (345)
Q Consensus 280 ~~~glL~SD~~L~~d~~~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~n 345 (345)
.++|+|+|||+|+.|+ +|+++|++||.|+ +.|+++|++||+|||+|+|+||.+||||++|+++|
T Consensus 257 ~~rGlL~SDq~L~~d~--~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 257 NGRGILESDQKLWTDA--STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred hcCCCcCCchHhhcCc--cHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999999 9999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.3e-100 Score=735.44 Aligned_cols=298 Identities=55% Similarity=0.949 Sum_probs=288.5
Q ss_pred CcccccccCCChhHHHHHHHHHHHHHHhCCCcchhhHHhhhccccccCCCceeecCCCcccccccCCCCCCCchhhHHHH
Q 041231 43 GLFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDDSAAIVSEKNSVPNRNSLRGFEVI 122 (345)
Q Consensus 43 ~L~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~GCDgSill~~~~~~~~E~~~~~N~~~l~g~~~I 122 (345)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++.++.+|+++++|. +++||++|
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i 79 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVI 79 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHH
Confidence 59999999999999999999999999999999999999999999999999999999887778999999999 68999999
Q ss_pred HHHHHHHHhhCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcccCCCCCCCCCCCCCHHHHHHHHHHcCCCcc
Q 041231 123 DEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTASLSGSNSNIPPPNSTVQNLIASFKRQGLNEV 202 (345)
Q Consensus 123 ~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~ 202 (345)
+.||+++|+.||++|||||||+||||+||+++|||.|+|++||+|+.+|.+..+ +.||+|+.+++++++.|+++||+++
T Consensus 80 ~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~ 158 (298)
T cd00693 80 DDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVT 158 (298)
T ss_pred HHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999999999999999999999999998877665 7899999999999999999999999
Q ss_pred ccccccccceeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHhhcC
Q 041231 203 DLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK 282 (345)
Q Consensus 203 dlVaLsGaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~~ 282 (345)
|||+|+||||||++||.+|.+|||||+|++.+||+||+.|+..|++.||+.++++..++||+.||.+|||+||++|+.++
T Consensus 159 d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~ 238 (298)
T cd00693 159 DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR 238 (298)
T ss_pred HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcc
Confidence 99999999999999999999999999999899999999999999999998665667899999999999999999999999
Q ss_pred cccccchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccccC
Q 041231 283 GLLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNCRLV 344 (345)
Q Consensus 283 glL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~ 344 (345)
|+|+|||+|+.|+ +|+++|++||.||+.|+++|+.||+||++++|+||.+||||++|+++
T Consensus 239 glL~SD~~L~~d~--~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 239 GLLTSDQALLSDP--RTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cCccCCHHhccCc--cHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 9999999999999 99999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=9.4e-72 Score=518.74 Aligned_cols=229 Identities=53% Similarity=0.899 Sum_probs=208.8
Q ss_pred HHHHHHHHHHhCCCcchhhHHhhhccccc-cCCCceeecCCCcccccccCCCCCCCchhhHHHHHHHHHHHHhhCCCccC
Q 041231 60 VMSVLQKAIARQPRIAASLLRLHFHDCFV-QGCDASVLLDDSAAIVSEKNSVPNRNSLRGFEVIDEIKAKLEEACPQTVS 138 (345)
Q Consensus 60 V~~~v~~~~~~d~~~a~~llRL~FHDcfv-~GCDgSill~~~~~~~~E~~~~~N~~~l~g~~~I~~iK~~le~~cp~~VS 138 (345)
||++|++.+.++++++|++|||+|||||+ +|||||||+. .+|+++++|.++.+++++|+.||+++|++||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 79999999999999999999999999999 9999999983 47999999995444999999999999999999999
Q ss_pred HHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcccCCCCCCCCCCCCCHHHHHHHHHHcCCCccccccccccceeccccc
Q 041231 139 CADIVALAARGSVVLSGGPSWELPLGRRDSRTASLSGSNSNIPPPNSTVQNLIASFKRQGLNEVDLVSLSGGHTIGVARC 218 (345)
Q Consensus 139 cADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHTiG~ahc 218 (345)
|||||+||||+||+.+|||.|+|++||+|+.+++..++ .+||.|+.++++|++.|+++|||++|||||+||||||++||
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999988766 68999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHhhcCcccccchhhccCchhh
Q 041231 219 VTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKGLLTSDEVLLTGDVGN 298 (345)
Q Consensus 219 ~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~~~ 298 (345)
.+|. ||| + .+||+||+.|+.. .| ..+++ ..+++| ||.+|||+||++++.++|+|+||++|+.|+ +
T Consensus 155 ~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~-~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~--~ 219 (230)
T PF00141_consen 155 SSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGD-NGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDP--E 219 (230)
T ss_dssp GCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGC-TCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHST--T
T ss_pred cccc-ccc-c----cccccccccccee---cc-CCCcc-cccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCH--H
Confidence 9999 999 4 4799999999988 99 43333 378899 999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhC
Q 041231 299 IVQLVKSYAED 309 (345)
Q Consensus 299 t~~~V~~yA~d 309 (345)
|+++|++||+|
T Consensus 220 t~~~V~~yA~d 230 (230)
T PF00141_consen 220 TRPIVERYAQD 230 (230)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
Confidence 99999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=4.9e-69 Score=511.88 Aligned_cols=231 Identities=30% Similarity=0.477 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHhCCCcchhhHHhhhcccc-------ccCCCceeecCCCcccccccCCCCCCCchhhHHHHHHHHHHHH
Q 041231 58 NIVMSVLQKAIARQPRIAASLLRLHFHDCF-------VQGCDASVLLDDSAAIVSEKNSVPNRNSLRGFEVIDEIKAKLE 130 (345)
Q Consensus 58 ~iV~~~v~~~~~~d~~~a~~llRL~FHDcf-------v~GCDgSill~~~~~~~~E~~~~~N~~~l~g~~~I~~iK~~le 130 (345)
+.+++++ ..+.++|.++|.+|||+||||| ++||||||++. +|+++++|.++.+|+++|++||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-
Confidence 3556677 4477899999999999999999 89999999984 5999999994447999999999987
Q ss_pred hhCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcccCCCCCCCCCCCCCHHHHHHHHHHcCCCcccccccccc
Q 041231 131 EACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTASLSGSNSNIPPPNSTVQNLIASFKRQGLNEVDLVSLSGG 210 (345)
Q Consensus 131 ~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsGa 210 (345)
++|||||||+||||+||+.+|||.|+|++||+|+.++++ +++||+|+.+++++++.|+++||+++|||+|+||
T Consensus 87 ----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGA 159 (289)
T PLN02608 87 ----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGG 159 (289)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccc
Confidence 489999999999999999999999999999999998853 5689999999999999999999999999999999
Q ss_pred ceeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHhhc--Ccc--cc
Q 041231 211 HTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLG--KGL--LT 286 (345)
Q Consensus 211 HTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~--~gl--L~ 286 (345)
||||++||. |+ +|.|. ++ .||.+|||+||++++.+ +|+ |+
T Consensus 160 HTiG~ahc~----r~-g~~g~------------------------------~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~ 203 (289)
T PLN02608 160 HTLGRAHPE----RS-GFDGP------------------------------WT-KEPLKFDNSYFVELLKGESEGLLKLP 203 (289)
T ss_pred ccccccccc----CC-CCCCC------------------------------CC-CCCCccChHHHHHHHcCCcCCccccc
Confidence 999999995 55 44321 11 69999999999999998 788 79
Q ss_pred cchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccc
Q 041231 287 SDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRKNC 341 (345)
Q Consensus 287 SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C 341 (345)
|||+|+.|+ +|+++|++||.|++.|+++|++||+||++|+|+||++||+.+.-
T Consensus 204 SD~~L~~d~--~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 204 TDKALLEDP--EFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred cCHhhhcCh--hHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 999999999 99999999999999999999999999999999999999998754
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.8e-66 Score=488.78 Aligned_cols=231 Identities=27% Similarity=0.383 Sum_probs=208.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcchhhHHhhhccccccCCCceeecCC---CcccccccCCCCCCCchhhHHHHHHHHHHHHh
Q 041231 55 QVDNIVMSVLQKAIARQPRIAASLLRLHFHDCFVQGCDASVLLDD---SAAIVSEKNSVPNRNSLRGFEVIDEIKAKLEE 131 (345)
Q Consensus 55 ~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~GCDgSill~~---~~~~~~E~~~~~N~~~l~g~~~I~~iK~~le~ 131 (345)
..++||+++|++.+. +++++|++|||+|||||+ ||+|+++++ +..+.+|+++++|.++.+||++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 557899999999999 999999999999999994 777777743 333457999999995559999999999987
Q ss_pred hCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcccCCCCCCCCCCCCCHHHHHHHHHHcCCCccccccccccc
Q 041231 132 ACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTASLSGSNSNIPPPNSTVQNLIASFKRQGLNEVDLVSLSGGH 211 (345)
Q Consensus 132 ~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaH 211 (345)
| +|||||||+||||+||+.+|||.|+|++||+|+.++....++.+||.|+.+++++++.|+++||+++|||+|+|||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 4 8999999999999999999999999999999999998777788999999999999999999999999999999999
Q ss_pred eeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHhhcCc--------
Q 041231 212 TIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGKG-------- 283 (345)
Q Consensus 212 TiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~~g-------- 283 (345)
|||++||.. ++|.|. + ..||.+|||+||++|+.++|
T Consensus 163 TiG~a~c~~-----~~~~g~---~----------------------------~~tp~~FDn~Yy~~ll~~~g~~~~~~~~ 206 (253)
T cd00691 163 TLGRCHKER-----SGYDGP---W----------------------------TKNPLKFDNSYFKELLEEDWKLPTPGLL 206 (253)
T ss_pred eeecccccC-----CCCCCC---C----------------------------CCCCCcccHHHHHHHhcCCCccCcCcce
Confidence 999999953 244321 0 15999999999999999999
Q ss_pred ccccchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCC
Q 041231 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLT 331 (345)
Q Consensus 284 lL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~t 331 (345)
+|+||++|+.|+ +|+++|+.||.|++.|+++|++||+||+++||..
T Consensus 207 ~L~sD~~L~~d~--~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 207 MLPTDKALLEDP--KFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred echhhHHHHcCc--cHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999 9999999999999999999999999999999963
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=4.8e-65 Score=477.65 Aligned_cols=232 Identities=28% Similarity=0.469 Sum_probs=208.3
Q ss_pred ccccc--CCChhHHHHHHHHHHHHHHhCCCcchhhHHhhhc-----ccccc--CCCceeecCCCcccccccCCCCCCCch
Q 041231 46 PQFYQ--FSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFH-----DCFVQ--GCDASVLLDDSAAIVSEKNSVPNRNSL 116 (345)
Q Consensus 46 ~~fY~--~sCP~~e~iV~~~v~~~~~~d~~~a~~llRL~FH-----Dcfv~--GCDgSill~~~~~~~~E~~~~~N~~~l 116 (345)
.+||. +-|+.+++.+++.+++.+ .+++++|.+|||+|| ||+++ ||||||.. .+|+++++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~ 75 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIH 75 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHH
Confidence 35665 458999999999999987 789999999999999 88876 99999944 3699999999655
Q ss_pred hhHHHHHHHHHHHHhhCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcccCCCCCCCCCCCCCHHHHHHHHHH
Q 041231 117 RGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTASLSGSNSNIPPPNSTVQNLIASFKR 196 (345)
Q Consensus 117 ~g~~~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~ 196 (345)
+||++|+.||+++ ++|||||||+||||+||+.+|||.|+|++||+|+.++++ +++||.|+.++++|++.|++
T Consensus 76 ~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~ 147 (250)
T PLN02364 76 IALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAK 147 (250)
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHH
Confidence 8999999999998 589999999999999999999999999999999999864 56899999999999999997
Q ss_pred -cCCCccccccccccceeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHH
Q 041231 197 -QGLNEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYF 275 (345)
Q Consensus 197 -~Gls~~dlVaLsGaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~FDn~Yy 275 (345)
+|||++|||+|+||||||++|| .|+ +|.|. ++ .||.+|||+||
T Consensus 148 ~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~------------------------------~~-~tp~~fDn~Yy 191 (250)
T PLN02364 148 QMGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA------------------------------WT-SNPLIFDNSYF 191 (250)
T ss_pred hcCCCHHHheeeecceeeccccC----CCC-CCCCC------------------------------CC-CCCCccchHHH
Confidence 5999999999999999999999 454 44321 11 69999999999
Q ss_pred HHHhhc--Ccccc--cchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 041231 276 KLVLLG--KGLLT--SDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPL 330 (345)
Q Consensus 276 ~~l~~~--~glL~--SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 330 (345)
++|+.+ +|+|. |||+|+.|+ +|+.+|++||.|++.|+++|++||+||++||+-
T Consensus 192 ~~ll~~~~~gll~l~sD~~L~~d~--~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 192 KELLSGEKEGLLQLVSDKALLDDP--VFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHhcCCcCCCccccchHHHccCc--hHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999 89865 999999999 999999999999999999999999999999973
No 7
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=5.5e-63 Score=463.15 Aligned_cols=219 Identities=30% Similarity=0.467 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhCCCcchhhHHhhhccccc-------cCCCceeecCCCcccccccCCCCCCCchhhHHHHHHHHHHHHh
Q 041231 59 IVMSVLQKAIARQPRIAASLLRLHFHDCFV-------QGCDASVLLDDSAAIVSEKNSVPNRNSLRGFEVIDEIKAKLEE 131 (345)
Q Consensus 59 iV~~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GCDgSill~~~~~~~~E~~~~~N~~~l~g~~~I~~iK~~le~ 131 (345)
-+++.+++.+ .+...+|.+|||+||||.+ |||||||.+. .|+++++|.|+..++++|++||+++
T Consensus 19 ~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~-- 89 (251)
T PLN02879 19 RCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF-- 89 (251)
T ss_pred HHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc--
Confidence 4566777766 4679999999999999964 8999999763 5999999996545999999999998
Q ss_pred hCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcccCCCCCCCCCCCCCHHHHHHHHHHcCCCccccccccccc
Q 041231 132 ACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTASLSGSNSNIPPPNSTVQNLIASFKRQGLNEVDLVSLSGGH 211 (345)
Q Consensus 132 ~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaH 211 (345)
++|||||||+||+|+||+.+|||.|+|++||+|+.++++ +++||.|+.++++|++.|++|||+++|||||+|||
T Consensus 90 ---~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaH 163 (251)
T PLN02879 90 ---PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGH 163 (251)
T ss_pred ---CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccc
Confidence 589999999999999999999999999999999998753 56899999999999999999999999999999999
Q ss_pred eeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHhhc--Ccc--ccc
Q 041231 212 TIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLG--KGL--LTS 287 (345)
Q Consensus 212 TiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~--~gl--L~S 287 (345)
|||++||. | ++|.|. +| .||.+|||+||++|+.+ +|+ |+|
T Consensus 164 TiG~ah~~----r-~g~~g~------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll~L~S 207 (251)
T PLN02879 164 TLGRCHKE----R-SGFEGA------------------------------WT-PNPLIFDNSYFKEILSGEKEGLLQLPT 207 (251)
T ss_pred cccccccc----c-ccCCCC------------------------------CC-CCccceeHHHHHHHHcCCcCCCccchh
Confidence 99999995 4 444331 23 58999999999999999 888 679
Q ss_pred chhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 041231 288 DEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPL 330 (345)
Q Consensus 288 D~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 330 (345)
|++|+.|+ +|+++|++||.||+.||++|++||+||++||+.
T Consensus 208 D~aL~~D~--~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 208 DKALLDDP--LFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hHHHhcCC--cHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999 999999999999999999999999999999985
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=8e-63 Score=476.90 Aligned_cols=236 Identities=25% Similarity=0.378 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHhCCC---cchhhHHhhhccccc------------cCCCceeecCCCcccccccCCCCCCCchhhHH
Q 041231 56 VDNIVMSVLQKAIARQPR---IAASLLRLHFHDCFV------------QGCDASVLLDDSAAIVSEKNSVPNRNSLRGFE 120 (345)
Q Consensus 56 ~e~iV~~~v~~~~~~d~~---~a~~llRL~FHDcfv------------~GCDgSill~~~~~~~~E~~~~~N~~~l~g~~ 120 (345)
+|..|+++|++.+..+.. .|+.+|||+||||++ +|||||||++.+ .|+++++|. +++ +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~-gL~--~ 88 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANI-GLD--E 88 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCC-CHH--H
Confidence 588999999999985544 567799999999996 899999999753 599999998 455 8
Q ss_pred HHHHHHHHHHhhCCCccCHHhHHHHhhhhhhhh-cCCCCcccCCCCcCCCCcccCCCCCCCCCCCCCHHHHHHHHHHcCC
Q 041231 121 VIDEIKAKLEEACPQTVSCADIVALAARGSVVL-SGGPSWELPLGRRDSRTASLSGSNSNIPPPNSTVQNLIASFKRQGL 199 (345)
Q Consensus 121 ~I~~iK~~le~~cp~~VScADilalAar~Av~~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl 199 (345)
+|+.+|..+|+.| |||||||+||||+||+. .|||.|+|++||+|++++.+ +++||.|+.++++|++.|+++||
T Consensus 89 vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf 162 (328)
T cd00692 89 IVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGF 162 (328)
T ss_pred HHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCC
Confidence 9999999999998 99999999999999995 59999999999999998864 56899999999999999999999
Q ss_pred CccccccccccceeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHh
Q 041231 200 NEVDLVSLSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVL 279 (345)
Q Consensus 200 s~~dlVaLsGaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~ 279 (345)
|++|||+|+||||||++|. +||+++ .+++| .||.+|||+||+|++
T Consensus 163 ~~~E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~ll 207 (328)
T cd00692 163 SPDELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIETL 207 (328)
T ss_pred CHHHHhhhcccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHHHH
Confidence 9999999999999999982 366653 14678 699999999999987
Q ss_pred -hcCc-------------------ccccchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccc
Q 041231 280 -LGKG-------------------LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNISPLTGFNGEVRK 339 (345)
Q Consensus 280 -~~~g-------------------lL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~ 339 (345)
.+++ +|+||++|+.|+ +|+.+|++||+||+.|+++|++||+||++|||. .....
T Consensus 208 ~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~--~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~ 281 (328)
T cd00692 208 LKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDP--RTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLT 281 (328)
T ss_pred HcCCCCCCccccccccccCccccccccchHHHhcCC--cHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhc
Confidence 4555 499999999999 999999999999999999999999999999986 33778
Q ss_pred ccccCC
Q 041231 340 NCRLVN 345 (345)
Q Consensus 340 ~C~~~n 345 (345)
+|+.|+
T Consensus 282 dcs~v~ 287 (328)
T cd00692 282 DCSDVI 287 (328)
T ss_pred cCcccC
Confidence 999875
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=6e-59 Score=438.34 Aligned_cols=224 Identities=34% Similarity=0.511 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHhCCCcchhhHHhhhcccccc--------CCCceeecCCCcccccccCCCCCCCchhhHHHHHHHHHHHH
Q 041231 59 IVMSVLQKAIARQPRIAASLLRLHFHDCFVQ--------GCDASVLLDDSAAIVSEKNSVPNRNSLRGFEVIDEIKAKLE 130 (345)
Q Consensus 59 iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~--------GCDgSill~~~~~~~~E~~~~~N~~~l~g~~~I~~iK~~le 130 (345)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|.++.+++++|++||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcC
Confidence 5888999999999999999999999999996 999999997 39999999976799999999999999
Q ss_pred hhCCCccCHHhHHHHhhhhhhhhc--CCCCcccCCCCcCCCCcc--cCCCCCCCCCCCCCHHHHHHHHHHcCCCcccccc
Q 041231 131 EACPQTVSCADIVALAARGSVVLS--GGPSWELPLGRRDSRTAS--LSGSNSNIPPPNSTVQNLIASFKRQGLNEVDLVS 206 (345)
Q Consensus 131 ~~cp~~VScADilalAar~Av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVa 206 (345)
. |++|||||||++|+++||+.+ |||.|+|++||+|+..+. ...+...+|.|..+++++++.|+++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999764 3345667899999999999999999999999999
Q ss_pred cc-cccee-ccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHhhcC--
Q 041231 207 LS-GGHTI-GVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDNTYFKLVLLGK-- 282 (345)
Q Consensus 207 Ls-GaHTi-G~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~~-- 282 (345)
|+ ||||| |++||..|..|+ | .+|+.||.+|||+||++++.++
T Consensus 154 L~~GaHti~G~~~~~~~~~~~------------------------~----------~~~~~tp~~fDN~yy~~l~~~~~~ 199 (255)
T cd00314 154 LSAGAHTLGGKNHGDLLNYEG------------------------S----------GLWTSTPFTFDNAYFKNLLDMNWE 199 (255)
T ss_pred hccCCeeccCcccCCCCCccc------------------------C----------CCCCCCCCccchHHHHHHhcCCcc
Confidence 99 99999 999998877664 1 1244799999999999999998
Q ss_pred --------------cccccchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 041231 283 --------------GLLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGN 326 (345)
Q Consensus 283 --------------glL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 326 (345)
++|+||++|+.|+ +|+.+|++||.|++.|+++|++||+||++
T Consensus 200 ~~~~~~~~~~~~~~~~l~sD~~L~~d~--~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 200 WRVGSPDPDGVKGPGLLPSDYALLSDS--ETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cccCCccCCCcccCCCchhhHHHhcCH--hHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 8999999999999 99999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=2.9e-56 Score=437.86 Aligned_cols=259 Identities=21% Similarity=0.311 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHhC--------CCcchhhHHhhhccccc-------cCCC-ceeecCCCcccccccCCCCCCCchhhHHH
Q 041231 58 NIVMSVLQKAIARQ--------PRIAASLLRLHFHDCFV-------QGCD-ASVLLDDSAAIVSEKNSVPNRNSLRGFEV 121 (345)
Q Consensus 58 ~iV~~~v~~~~~~d--------~~~a~~llRL~FHDcfv-------~GCD-gSill~~~~~~~~E~~~~~N~~~l~g~~~ 121 (345)
+.|+++|++.+... ...+|.+|||+|||+.+ ||++ |+|.+. +|++++.|.++.+++.+
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL~~a~~~ 118 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNLDKARRL 118 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhHHHHHHH
Confidence 67889999988764 47999999999999986 8996 788764 69999999988789999
Q ss_pred HHHHHHHHHhhCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcccC---------------------------
Q 041231 122 IDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTASLS--------------------------- 174 (345)
Q Consensus 122 I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~--------------------------- 174 (345)
+++||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|...+...
T Consensus 119 L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a 194 (409)
T cd00649 119 LWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAA 194 (409)
T ss_pred HHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhh
Confidence 99999988 44799999999999999999999999999999999754320
Q ss_pred --------CCCC--CCCCCCCCHHHHHHHHHHcCCCccccccc-cccceeccccccccccccccCCCCCCCCCcccHHHH
Q 041231 175 --------GSNS--NIPPPNSTVQNLIASFKRQGLNEVDLVSL-SGGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYY 243 (345)
Q Consensus 175 --------~~~~--~lP~p~~~~~~l~~~F~~~Gls~~dlVaL-sGaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~ 243 (345)
.+++ .||+|..++.+|++.|.+||||++||||| +||||||++||.+|.+||. +||++++.|+
T Consensus 195 ~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~~~~ 267 (409)
T cd00649 195 VQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAPIEQ 267 (409)
T ss_pred hhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCHHHH
Confidence 1223 69999999999999999999999999999 5999999999999999982 6999999999
Q ss_pred HHhh--hcCCCCCC-CCCCCCCC---CCCCCccChHHHHHHhh------------------------------------c
Q 041231 244 FGLK--SVCPRTGG-DNNISPLD---FASPAKFDNTYFKLVLL------------------------------------G 281 (345)
Q Consensus 244 ~~L~--~~Cp~~~~-~~~~~~~D---~~Tp~~FDn~Yy~~l~~------------------------------------~ 281 (345)
+.|+ ..||...+ ++....+| +.||.+|||+||++|+. +
T Consensus 268 ~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~ 347 (409)
T cd00649 268 QGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHA 347 (409)
T ss_pred HhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccC
Confidence 9996 89997433 34456788 57999999999999998 5
Q ss_pred CcccccchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 041231 282 KGLLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKM--GNISPLTGFNG 335 (345)
Q Consensus 282 ~glL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgv~tg~~G 335 (345)
+|||+||++|+.|+ +|+++|++||.|++.||++|++||+|| +.+|+++--.|
T Consensus 348 ~gmL~SD~aL~~Dp--~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 348 PMMLTTDLALRFDP--EYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cccchhhHhhhcCc--cHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 69999999999999 999999999999999999999999999 68999885544
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=4e-53 Score=439.13 Aligned_cols=254 Identities=22% Similarity=0.297 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHhC--------CCcchhhHHhhhccccc-------cCC-CceeecCCCcccccccCCCCCCCchhhHHH
Q 041231 58 NIVMSVLQKAIARQ--------PRIAASLLRLHFHDCFV-------QGC-DASVLLDDSAAIVSEKNSVPNRNSLRGFEV 121 (345)
Q Consensus 58 ~iV~~~v~~~~~~d--------~~~a~~llRL~FHDcfv-------~GC-DgSill~~~~~~~~E~~~~~N~~~l~g~~~ 121 (345)
+.|+++|++.+... ...+|-+|||+||++.+ ||| .|+|.+. +|++++.|.++.+++.+
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw~~N~~Ldka~~l 128 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSWPDNVNLDKARRL 128 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCchhhhhHHHHHHH
Confidence 46899999988764 47899999999999986 888 4778764 69999999987788999
Q ss_pred HHHHHHHHHhhCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcc-----------------------------
Q 041231 122 IDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTAS----------------------------- 172 (345)
Q Consensus 122 I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~----------------------------- 172 (345)
+++||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 129 L~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~ 204 (716)
T TIGR00198 129 LWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAAT 204 (716)
T ss_pred HHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhh
Confidence 9998885 7899999999999999999999999999999999994321
Q ss_pred --------cCCCCCCCCCCCCCHHHHHHHHHHcCCCcccccccc-ccceeccccccccccccccCCCCCCCCCcccHHHH
Q 041231 173 --------LSGSNSNIPPPNSTVQNLIASFKRQGLNEVDLVSLS-GGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYY 243 (345)
Q Consensus 173 --------~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~ 243 (345)
+.. ...+|+|..++.+|++.|.+||||++|||||+ ||||||++||.+|.+|| ++||++++.|+
T Consensus 205 ~~Gliyvnpeg-~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~dP~~~~~~~ 276 (716)
T TIGR00198 205 EMGLIYVNPEG-PDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GPDPEGAPIEE 276 (716)
T ss_pred hccccccCccc-ccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CCCCCcCHHHH
Confidence 111 22699999999999999999999999999996 99999999999999998 27999999999
Q ss_pred HHhhhcCCCCC---CCCCCCCCC---CCCCCccChHHHHHHhhc----------------------------------Cc
Q 041231 244 FGLKSVCPRTG---GDNNISPLD---FASPAKFDNTYFKLVLLG----------------------------------KG 283 (345)
Q Consensus 244 ~~L~~~Cp~~~---~~~~~~~~D---~~Tp~~FDn~Yy~~l~~~----------------------------------~g 283 (345)
+.|+.+||... +++..+.+| +.||.+|||+||+||+.+ .+
T Consensus 277 ~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~ 356 (716)
T TIGR00198 277 QGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPI 356 (716)
T ss_pred HHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccC
Confidence 99999998532 233356788 579999999999999975 68
Q ss_pred ccccchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhh--cCCCCC
Q 041231 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMG--NISPLT 331 (345)
Q Consensus 284 lL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~t 331 (345)
+|+||++|..|+ +|+++|++||.|++.|+++|++||+||+ .+|++.
T Consensus 357 mL~SDlaL~~Dp--~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 357 MLDADLALRFDP--EFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred ccchhHHhccCc--cHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 999999999999 9999999999999999999999999998 566654
No 12
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=8.7e-52 Score=387.47 Aligned_cols=245 Identities=24% Similarity=0.285 Sum_probs=191.7
Q ss_pred cCCCCCCCCCccCcccccccCCChhHHHHHHHHHHHHHHhCCCcchhhHHhhhcccc-------ccCCCceeecCCCccc
Q 041231 31 WGGNGQYGGSFYGLFPQFYQFSCPQVDNIVMSVLQKAIARQPRIAASLLRLHFHDCF-------VQGCDASVLLDDSAAI 103 (345)
Q Consensus 31 ~~~~~~~~~~~~~L~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcf-------v~GCDgSill~~~~~~ 103 (345)
||+.-.+.+....++.+||...- .+.|.-.-..+...++++++++|||+||||| ++||||||+++..
T Consensus 1 wp~~~d~le~i~~~~~g~~~~~f---~~~v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~--- 74 (264)
T cd08201 1 WPSQIDELEDILYLQSGYSARGF---VAGVTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD--- 74 (264)
T ss_pred CCChHHHHHHHHHhcccceeccc---ccccccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---
Confidence 77633333444456777776421 1222223333455789999999999999999 8999999999742
Q ss_pred ccccC-CCCCCCchhhHHHHHHHHHHHHhhCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcccCCCCCCCCC
Q 041231 104 VSEKN-SVPNRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTASLSGSNSNIPP 182 (345)
Q Consensus 104 ~~E~~-~~~N~~~l~g~~~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~ 182 (345)
.+|+. .+.|. ++++|+.|+.+ +||||||||||+|+||+.+|||.|+|++||+|+.++.+. .||.
T Consensus 75 ~~En~G~~~n~-~l~~~~~i~~~----------~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~ 139 (264)
T cd08201 75 RPENIGSGFNT-TLNFFVNFYSP----------RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPE 139 (264)
T ss_pred ChhhccCchhh-ccccceeeccC----------ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCC
Confidence 36777 44454 67788776543 699999999999999999999999999999999988652 4999
Q ss_pred CCCCHHHHHHHHHHcCCCccccccccc-cceeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCC
Q 041231 183 PNSTVQNLIASFKRQGLNEVDLVSLSG-GHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISP 261 (345)
Q Consensus 183 p~~~~~~l~~~F~~~Gls~~dlVaLsG-aHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~ 261 (345)
|+.++++|++.|++|||+++|||+|+| |||||++||..|.+++- |. ...+...+
T Consensus 140 P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~---------~g----------------~~~~~~~p 194 (264)
T cd08201 140 PQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVP---------PG----------------SVPDTVLQ 194 (264)
T ss_pred CccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcC---------Cc----------------cccCCCCC
Confidence 999999999999999999999999995 99999999998877642 10 00012356
Q ss_pred CCCCCCCccChHHHHHHhhcCc----------ccccchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 041231 262 LDFASPAKFDNTYFKLVLLGKG----------LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGN 326 (345)
Q Consensus 262 ~D~~Tp~~FDn~Yy~~l~~~~g----------lL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 326 (345)
+| .||.+|||+||.+++.+.. .+.||..++..++|.|.. .+| +++.|.+.++..+.||.+
T Consensus 195 ~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~t~~---~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 195 FF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNVTMN---ELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccHHHH---Hhc-ChHHHHHHHHHHHHHHhC
Confidence 77 7999999999999998742 368999999877556554 566 799999999999999974
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=7.5e-50 Score=412.71 Aligned_cols=265 Identities=20% Similarity=0.281 Sum_probs=226.8
Q ss_pred ccCCChhH-HHHHHHHHHHHHHhC--------CCcchhhHHhhhccccc-------cCCC-ceeecCCCcccccccCCCC
Q 041231 49 YQFSCPQV-DNIVMSVLQKAIARQ--------PRIAASLLRLHFHDCFV-------QGCD-ASVLLDDSAAIVSEKNSVP 111 (345)
Q Consensus 49 Y~~sCP~~-e~iV~~~v~~~~~~d--------~~~a~~llRL~FHDcfv-------~GCD-gSill~~~~~~~~E~~~~~ 111 (345)
|.+-+-.+ .+.|+++|++.+... ...+|.+|||+||++.+ |||+ |+|.+ .+|++++.
T Consensus 47 y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf------~pe~~w~~ 120 (726)
T PRK15061 47 YAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------APLNSWPD 120 (726)
T ss_pred HHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC------cccccchh
Confidence 34444333 357899999988764 47999999999999986 8986 77766 46999999
Q ss_pred CCCchhhHHHHHHHHHHHHhhCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCcccC-----------------
Q 041231 112 NRNSLRGFEVIDEIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTASLS----------------- 174 (345)
Q Consensus 112 N~~~l~g~~~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~----------------- 174 (345)
|.++.+++.++++||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|...+...
T Consensus 121 N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~ 196 (726)
T PRK15061 121 NVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYS 196 (726)
T ss_pred hhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccc
Confidence 998888999999999998 45799999999999999999999999999999998654320
Q ss_pred ---------------------CCCCCCCCCCCCHHHHHHHHHHcCCCcccccccc-ccceeccccccccccccccCCCCC
Q 041231 175 ---------------------GSNSNIPPPNSTVQNLIASFKRQGLNEVDLVSLS-GGHTIGVARCVTFKQRLYNQNGNN 232 (345)
Q Consensus 175 ---------------------~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~ahc~~f~~Rl~~~~g~~ 232 (345)
+-...+|+|..++.+|++.|++||||++|||||+ ||||||++||..|.+||
T Consensus 197 ~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl------- 269 (726)
T PRK15061 197 GERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV------- 269 (726)
T ss_pred cccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-------
Confidence 0012389999999999999999999999999995 99999999999999998
Q ss_pred CCCCcccHHHHHHhh--hcCCCCC-CCCCCCCCC---CCCCCccChHHHHHHhhc-------------------------
Q 041231 233 QPDETLERTYYFGLK--SVCPRTG-GDNNISPLD---FASPAKFDNTYFKLVLLG------------------------- 281 (345)
Q Consensus 233 ~~dp~~d~~~~~~L~--~~Cp~~~-~~~~~~~~D---~~Tp~~FDn~Yy~~l~~~------------------------- 281 (345)
++||++++.+++.|. ..||... +++....+| +.||.+|||+||++|+.+
T Consensus 270 gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~ 349 (726)
T PRK15061 270 GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTV 349 (726)
T ss_pred CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccC
Confidence 279999999999986 8999743 334456788 579999999999999985
Q ss_pred -----------CcccccchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhh--cCCCCCC
Q 041231 282 -----------KGLLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMG--NISPLTG 332 (345)
Q Consensus 282 -----------~glL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~tg 332 (345)
.+||+||++|..|| +|+++|++||.|++.|+++|++||.||+ .+|+++-
T Consensus 350 pd~~~~~~~~~~~MLtSD~AL~~DP--~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 350 PDAHDPSKKHAPTMLTTDLALRFDP--EYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred CcccccccccCcccccccHHhhcCC--cHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhh
Confidence 58999999999999 9999999999999999999999999994 4776653
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.9e-39 Score=307.78 Aligned_cols=220 Identities=20% Similarity=0.282 Sum_probs=180.8
Q ss_pred HHHHHHHHhCCCcchhhHHhhhccccc-------cCCCce-eecCCCcccccccCCCCCCC--chhhHHHHHHHHHHHHh
Q 041231 62 SVLQKAIARQPRIAASLLRLHFHDCFV-------QGCDAS-VLLDDSAAIVSEKNSVPNRN--SLRGFEVIDEIKAKLEE 131 (345)
Q Consensus 62 ~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GCDgS-ill~~~~~~~~E~~~~~N~~--~l~g~~~I~~iK~~le~ 131 (345)
+.+++.+.....+++.||||+||++.+ |||+|+ |.+ .+|++++.|.+ +.+.+.++++||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 478888888889999999999999986 899999 665 47999999997 66889999999999842
Q ss_pred hC-C-CccCHHhHHHHhhhhhhhhcCC-----CCcccCCCCcCCCCcccCCCC---CCCCCCC------------CCHHH
Q 041231 132 AC-P-QTVSCADIVALAARGSVVLSGG-----PSWELPLGRRDSRTASLSGSN---SNIPPPN------------STVQN 189 (345)
Q Consensus 132 ~c-p-~~VScADilalAar~Av~~~GG-----P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~~ 189 (345)
.- + ..||.||+|+||+..|||.+|| |.|++.+||.|...+... ++ ..+|.+. ...++
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td-~~sf~~l~P~adg~rny~~~~~~~~~~~~ 169 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTD-VESFEVLEPKADGFRNYLKKGYRVPPEEM 169 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCC-cccccccCCCCcccccccccCCCCCHHHH
Confidence 21 1 2699999999999999999999 999999999999876432 11 1345332 23478
Q ss_pred HHHHHHHcCCCccccccccccc-eeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCC
Q 041231 190 LIASFKRQGLNEVDLVSLSGGH-TIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPA 268 (345)
Q Consensus 190 l~~~F~~~Gls~~dlVaLsGaH-TiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~ 268 (345)
|++.|.++|||++|||||+||| ++|..|..+ +.| |++ .+|.
T Consensus 170 Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G--------------------~wT-----------~~p~ 211 (297)
T cd08200 170 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG--------------------VFT-----------DRPG 211 (297)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCC--------------------CCc-----------CCCC
Confidence 9999999999999999999997 799887422 112 221 5899
Q ss_pred ccChHHHHHHhhcC--------------------c-----ccccchhhccCchhhHHHHHHHHhhC--HHHHHHHHHHHH
Q 041231 269 KFDNTYFKLVLLGK--------------------G-----LLTSDEVLLTGDVGNIVQLVKSYAED--DELFFKQFAQSM 321 (345)
Q Consensus 269 ~FDn~Yy~~l~~~~--------------------g-----lL~SD~~L~~d~~~~t~~~V~~yA~d--~~~F~~~Fa~Am 321 (345)
+|||.||++|+... | .+.+|..|..|+ +.|++|+.||.| ++.||+||++||
T Consensus 212 ~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~--~~R~~ve~YA~dd~~~~F~~DF~~A~ 289 (297)
T cd08200 212 VLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNS--ELRAVAEVYASDDAQEKFVKDFVAAW 289 (297)
T ss_pred ccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCH--HHHHHHHHHhcccchhHHHHHHHHHH
Confidence 99999999999520 1 267899999999 999999999998 999999999999
Q ss_pred HHhhcCC
Q 041231 322 VKMGNIS 328 (345)
Q Consensus 322 ~Km~~lg 328 (345)
.||+++.
T Consensus 290 ~Klmeld 296 (297)
T cd08200 290 TKVMNLD 296 (297)
T ss_pred HHHHhcC
Confidence 9999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.9e-34 Score=300.05 Aligned_cols=216 Identities=22% Similarity=0.294 Sum_probs=175.3
Q ss_pred HHHHHHhCCCcchhhHHhhhccccc-------cCCCce-eecCCCcccccccCCCCC--CCchhhHHHHHHHHHHHHhhC
Q 041231 64 LQKAIARQPRIAASLLRLHFHDCFV-------QGCDAS-VLLDDSAAIVSEKNSVPN--RNSLRGFEVIDEIKAKLEEAC 133 (345)
Q Consensus 64 v~~~~~~d~~~a~~llRL~FHDcfv-------~GCDgS-ill~~~~~~~~E~~~~~N--~~~l~g~~~I~~iK~~le~~c 133 (345)
+++.+......++.|||++||++.+ ||++|+ |.+. +|++++.| .++.+.++++|.||+++..
T Consensus 437 lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~-- 508 (716)
T TIGR00198 437 LKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKIQAEFAK-- 508 (716)
T ss_pred HHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHHHHHcCC--
Confidence 4445666778899999999999986 899999 7664 69999999 7677889999999998842
Q ss_pred CCccCHHhHHHHhhhhhhhhc---CCC--CcccCCCCcCCCCcccCCCCCCCC---CC------------CCCHHHHHHH
Q 041231 134 PQTVSCADIVALAARGSVVLS---GGP--SWELPLGRRDSRTASLSGSNSNIP---PP------------NSTVQNLIAS 193 (345)
Q Consensus 134 p~~VScADilalAar~Av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP---~p------------~~~~~~l~~~ 193 (345)
..||+||+|+||+..|||.+ ||| .|++.+||.|...+.. +++...| .+ ....+.|++.
T Consensus 509 -~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~ 586 (716)
T TIGR00198 509 -GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEELLLDK 586 (716)
T ss_pred -CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHHHHHHH
Confidence 26999999999999999998 898 5899999999987643 3333332 11 1235668899
Q ss_pred HHHcCCCcccccccccc-ceeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccCh
Q 041231 194 FKRQGLNEVDLVSLSGG-HTIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKFDN 272 (345)
Q Consensus 194 F~~~Gls~~dlVaLsGa-HTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~FDn 272 (345)
|.++|||++|||||+|| |++|+.|..+ +.|. + - .+|.+|||
T Consensus 587 a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G~--------------------~----------T-~~p~~f~N 628 (716)
T TIGR00198 587 AQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHGV--------------------F----------T-DRVGVLSN 628 (716)
T ss_pred HHhCCCChHHHHheecchhhccccCCCC-------CCCC--------------------C----------c-CCCCcccc
Confidence 99999999999999998 5999998532 1121 1 1 48899999
Q ss_pred HHHHHHhhcC--------------------c---cc--ccchhhccCchhhHHHHHHHHhhCH--HHHHHHHHHHHHHhh
Q 041231 273 TYFKLVLLGK--------------------G---LL--TSDEVLLTGDVGNIVQLVKSYAEDD--ELFFKQFAQSMVKMG 325 (345)
Q Consensus 273 ~Yy~~l~~~~--------------------g---lL--~SD~~L~~d~~~~t~~~V~~yA~d~--~~F~~~Fa~Am~Km~ 325 (345)
.||++|+... | ++ .+|..|..|+ +.|++|+.||+|+ ++||+||++||.|++
T Consensus 629 dfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~--~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm 706 (716)
T TIGR00198 629 DFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNS--ILRAVAEVYAQDDAREKFVKDFVAAWTKVM 706 (716)
T ss_pred HHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCH--HHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 9999998621 1 22 6799999999 9999999999997 899999999999999
Q ss_pred cCCC
Q 041231 326 NISP 329 (345)
Q Consensus 326 ~lgv 329 (345)
+++-
T Consensus 707 ~ldr 710 (716)
T TIGR00198 707 NLDR 710 (716)
T ss_pred hCCC
Confidence 9874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=6.6e-34 Score=294.58 Aligned_cols=221 Identities=22% Similarity=0.306 Sum_probs=182.0
Q ss_pred HHHHHHHHhCCCcchhhHHhhhccccc-------cCCCce-eecCCCcccccccCCCCCC--CchhhHHHHHHHHHHHHh
Q 041231 62 SVLQKAIARQPRIAASLLRLHFHDCFV-------QGCDAS-VLLDDSAAIVSEKNSVPNR--NSLRGFEVIDEIKAKLEE 131 (345)
Q Consensus 62 ~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GCDgS-ill~~~~~~~~E~~~~~N~--~~l~g~~~I~~iK~~le~ 131 (345)
..+++.+.......+.|||++||++.+ ||++|+ |.|. +|++++.|. ++.+.+++++.||++++.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 478888888888999999999999986 899999 7774 699999998 667889999999999965
Q ss_pred hC--CCccCHHhHHHHhhhhhhhhc---CC--CCcccCCCCcCCCCcccCCCCC---CCCCCC------------CCHHH
Q 041231 132 AC--PQTVSCADIVALAARGSVVLS---GG--PSWELPLGRRDSRTASLSGSNS---NIPPPN------------STVQN 189 (345)
Q Consensus 132 ~c--p~~VScADilalAar~Av~~~---GG--P~~~v~~GR~D~~~s~~~~~~~---~lP~p~------------~~~~~ 189 (345)
.- ...||.||+|+||+..|||.+ || |.|++.+||.|...+.. +++. .+|.+. ...+.
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHH
Confidence 32 136999999999999999998 68 99999999999987543 3322 456543 12478
Q ss_pred HHHHHHHcCCCccccccccccc-eeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCC
Q 041231 190 LIASFKRQGLNEVDLVSLSGGH-TIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPA 268 (345)
Q Consensus 190 l~~~F~~~Gls~~dlVaLsGaH-TiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~ 268 (345)
|++.|.++|||+.|||||+||| ++|..|-.+ +.| |++ .+|.
T Consensus 595 L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S-------~~G--------------------~~T-----------~~p~ 636 (726)
T PRK15061 595 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG--------------------VFT-----------DRPG 636 (726)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCC--------------------CCc-----------CCCC
Confidence 9999999999999999999997 788877322 112 111 4889
Q ss_pred ccChHHHHHHhhcC--------------------c---c--cccchhhccCchhhHHHHHHHHhhC--HHHHHHHHHHHH
Q 041231 269 KFDNTYFKLVLLGK--------------------G---L--LTSDEVLLTGDVGNIVQLVKSYAED--DELFFKQFAQSM 321 (345)
Q Consensus 269 ~FDn~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~~~t~~~V~~yA~d--~~~F~~~Fa~Am 321 (345)
+|||.||+||+... | + +.+|..|..|+ +.|++|+.||.| +++||+||++||
T Consensus 637 ~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds--~lRa~aEvYA~dd~~~kF~~DF~~Aw 714 (726)
T PRK15061 637 VLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNS--QLRALAEVYASDDAKEKFVRDFVAAW 714 (726)
T ss_pred ccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCH--HHHHHHHHHhcccchhHHHHHHHHHH
Confidence 99999999999420 1 1 47899999999 999999999999 999999999999
Q ss_pred HHhhcCCC
Q 041231 322 VKMGNISP 329 (345)
Q Consensus 322 ~Km~~lgv 329 (345)
.|+++++-
T Consensus 715 ~Kvmeldr 722 (726)
T PRK15061 715 TKVMNLDR 722 (726)
T ss_pred HHHHhCCC
Confidence 99999873
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.3e-29 Score=247.89 Aligned_cols=251 Identities=20% Similarity=0.282 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhC--------CCcchhhHHhhhccccc-------cCCCceeecCCCcccccccCCCCCCCchhhHHHHH
Q 041231 59 IVMSVLQKAIARQ--------PRIAASLLRLHFHDCFV-------QGCDASVLLDDSAAIVSEKNSVPNRNSLRGFEVID 123 (345)
Q Consensus 59 iV~~~v~~~~~~d--------~~~a~~llRL~FHDcfv-------~GCDgSill~~~~~~~~E~~~~~N~~~l~g~~~I~ 123 (345)
.|+..++..+... ...+|-+|||+||-+.+ +|..+. ..++.++.++|.|.++.+++.++.
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G-----~qRFaPlnSWPDN~nLDKarRLLW 145 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGG-----QQRFAPLNSWPDNANLDKARRLLW 145 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCC-----ceecccccCCCcccchHHHHHHhh
Confidence 3455666555543 35799999999999986 444332 245678899999998889999999
Q ss_pred HHHHHHHhhCCCccCHHhHHHHhhhhhhhhcCCCCcccCCCCcCCCCccc------------------------------
Q 041231 124 EIKAKLEEACPQTVSCADIVALAARGSVVLSGGPSWELPLGRRDSRTASL------------------------------ 173 (345)
Q Consensus 124 ~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~------------------------------ 173 (345)
+||+++ +..||.||+|+||+.+|++.+|++.+.+..||.|--.+..
T Consensus 146 PIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaavq 221 (730)
T COG0376 146 PIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQ 221 (730)
T ss_pred hHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhhe
Confidence 999998 5689999999999999999999999999999999766543
Q ss_pred --------CCCCCCCCCCCCCHHHHHHHHHHcCCCcccccccc-ccceeccccccccccccccCCCCCCCCCcccHHHHH
Q 041231 174 --------SGSNSNIPPPNSTVQNLIASFKRQGLNEVDLVSLS-GGHTIGVARCVTFKQRLYNQNGNNQPDETLERTYYF 244 (345)
Q Consensus 174 --------~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~ 244 (345)
.+ +...|+|..+..+++..|++|+++++|.|||+ ||||+|++|...-.+- -+++|.-.+--.+
T Consensus 222 MGLIYVNPEG-png~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~-------vg~ePe~a~ie~q 293 (730)
T COG0376 222 MGLIYVNPEG-PNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASN-------VGPEPEAAPIEQQ 293 (730)
T ss_pred eeeEEeCCCC-CCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhh-------cCCCccccchhhh
Confidence 22 23589999999999999999999999999998 7999999996541111 1356654444444
Q ss_pred Hhhh--cCCCCCCC-CCCCCCC---CCCCCccChHHHHHHhhc-----------------------------------Cc
Q 041231 245 GLKS--VCPRTGGD-NNISPLD---FASPAKFDNTYFKLVLLG-----------------------------------KG 283 (345)
Q Consensus 245 ~L~~--~Cp~~~~~-~~~~~~D---~~Tp~~FDn~Yy~~l~~~-----------------------------------~g 283 (345)
.|-. .|-...+. +-...+. ..||++|||.||.+|... -.
T Consensus 294 GlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~ 373 (730)
T COG0376 294 GLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPM 373 (730)
T ss_pred ccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCce
Confidence 4442 23222222 2222333 269999999999999853 15
Q ss_pred ccccchhhccCchhhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCC
Q 041231 284 LLTSDEVLLTGDVGNIVQLVKSYAEDDELFFKQFAQSMVKMGNIS 328 (345)
Q Consensus 284 lL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lg 328 (345)
||.+|.+|--|| ..++|.++|.+|++.|.+.|++||-||.+-+
T Consensus 374 MlttDlaLr~DP--~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 374 MLTTDLALRFDP--EYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred eeccchhhhcCh--HHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 899999999999 9999999999999999999999999998643
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.4e-12 Score=131.35 Aligned_cols=216 Identities=23% Similarity=0.320 Sum_probs=157.6
Q ss_pred HHHHHHHHhCCCcchhhHHhhhccccc-------cCCCce-eecCCCcccccccCCCCCCC--chhhHHHHHHHHHHHHh
Q 041231 62 SVLQKAIARQPRIAASLLRLHFHDCFV-------QGCDAS-VLLDDSAAIVSEKNSVPNRN--SLRGFEVIDEIKAKLEE 131 (345)
Q Consensus 62 ~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GCDgS-ill~~~~~~~~E~~~~~N~~--~l~g~~~I~~iK~~le~ 131 (345)
..+++.+....-....|+-.+|-.+.+ +|.+|. |.|. +.++++.|.. +.+-+.+++.|.+.++
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 367888888888999999999998865 788877 5564 5899999964 2356788888888886
Q ss_pred hCCCccCHHhHHHHhhhhhhhhc---CCCC--cccCCCCcCCCCcccCCCCCC--C-CCC-----------CCCHH-HHH
Q 041231 132 ACPQTVSCADIVALAARGSVVLS---GGPS--WELPLGRRDSRTASLSGSNSN--I-PPP-----------NSTVQ-NLI 191 (345)
Q Consensus 132 ~cp~~VScADilalAar~Av~~~---GGP~--~~v~~GR~D~~~s~~~~~~~~--l-P~p-----------~~~~~-~l~ 191 (345)
..||.||+|+|++..+||.+ .|-. +|+.+||.|....... ++.. | |-. ..+.+ -|+
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 47999999999999999884 6654 5778999999776432 2221 1 221 12344 466
Q ss_pred HHHHHcCCCccccccccccc-eeccccccccccccccCCCCCCCCCcccHHHHHHhhhcCCCCCCCCCCCCCCCCCCCcc
Q 041231 192 ASFKRQGLNEVDLVSLSGGH-TIGVARCVTFKQRLYNQNGNNQPDETLERTYYFGLKSVCPRTGGDNNISPLDFASPAKF 270 (345)
Q Consensus 192 ~~F~~~Gls~~dlVaLsGaH-TiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~Tp~~F 270 (345)
+.-+-.+||.-||++|+||- -+|. ||.|+ ...++-| .|..+
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~-----------n~g~s-------------------------~~GVfT~--~pg~L 642 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGA-----------NYGGS-------------------------KHGVFTD--RPGVL 642 (730)
T ss_pred HHHHHhccCCccceEEEcceEeecc-----------CCCCC-------------------------ccceecc--Ccccc
Confidence 88888999999999999874 3332 22221 1223333 67777
Q ss_pred ChHHHHHHhhc----------C----------cc-----cccchhhccCchhhHHHHHHHHhhC--HHHHHHHHHHHHHH
Q 041231 271 DNTYFKLVLLG----------K----------GL-----LTSDEVLLTGDVGNIVQLVKSYAED--DELFFKQFAQSMVK 323 (345)
Q Consensus 271 Dn~Yy~~l~~~----------~----------gl-----L~SD~~L~~d~~~~t~~~V~~yA~d--~~~F~~~Fa~Am~K 323 (345)
.|.||.||+.- + |- -..|..+-+++ ..|.+.+-||.| +++|.+||++||.|
T Consensus 643 tndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns--~LRA~aEVYa~dda~ekFv~DFvaaw~k 720 (730)
T COG0376 643 TNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNS--ELRALAEVYASDDAKEKFVKDFVAAWTK 720 (730)
T ss_pred cchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcH--HHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 88888888742 1 21 24677777778 899999999975 78999999999999
Q ss_pred hhcCC
Q 041231 324 MGNIS 328 (345)
Q Consensus 324 m~~lg 328 (345)
..++.
T Consensus 721 VMn~D 725 (730)
T COG0376 721 VMNLD 725 (730)
T ss_pred Hhccc
Confidence 99875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=56.17 E-value=74 Score=31.67 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=28.5
Q ss_pred cCCCCcccCCCCcCCCCcccCCCCCCCCCC---CCCHHHHHHHHHHcCCCc
Q 041231 154 SGGPSWELPLGRRDSRTASLSGSNSNIPPP---NSTVQNLIASFKRQGLNE 201 (345)
Q Consensus 154 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gls~ 201 (345)
+|-..|..+.||-+...-.+.......+.. -..+.++...|++.|+..
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 577888999999855322111111111212 235777888898888864
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=50.03 E-value=14 Score=29.20 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 041231 312 LFFKQFAQSMVKMGNISPL 330 (345)
Q Consensus 312 ~F~~~Fa~Am~Km~~lgv~ 330 (345)
...++|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3568999999999999863
No 21
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=38.31 E-value=2e+02 Score=28.50 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=30.5
Q ss_pred hhcCCCCcccCCCCcCCCCcccCCCCCCCC---CCCCCHHHHHHHHHHcCCCcc
Q 041231 152 VLSGGPSWELPLGRRDSRTASLSGSNSNIP---PPNSTVQNLIASFKRQGLNEV 202 (345)
Q Consensus 152 ~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP---~p~~~~~~l~~~F~~~Gls~~ 202 (345)
..+|-..|..+.||-|-..-.........+ ++-..+.++.+.|++.|+..+
T Consensus 166 a~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~ 219 (317)
T TIGR00874 166 AEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTE 219 (317)
T ss_pred HHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcE
Confidence 345888999999998663211110000011 123467788889999998754
No 22
>PRK05269 transaldolase B; Provisional
Probab=35.89 E-value=1.8e+02 Score=28.70 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=30.6
Q ss_pred hcCCCCcccCCCCcCCCCcccCCCCCCCC---CCCCCHHHHHHHHHHcCCCcc
Q 041231 153 LSGGPSWELPLGRRDSRTASLSGSNSNIP---PPNSTVQNLIASFKRQGLNEV 202 (345)
Q Consensus 153 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP---~p~~~~~~l~~~F~~~Gls~~ 202 (345)
.+|-..+..+.||-|...-...+....-+ ++-..+.++...|++.|+..+
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 35778899999998854221100000111 123457888899999998765
No 23
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=34.76 E-value=17 Score=20.76 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 041231 4 FKFAITLLLLALIS 17 (345)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (345)
.|+.+.|++|++||
T Consensus 2 Mk~vIIlvvLLliS 15 (19)
T PF13956_consen 2 MKLVIILVVLLLIS 15 (19)
T ss_pred ceehHHHHHHHhcc
Confidence 36788888888875
No 24
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=32.18 E-value=2.9e+02 Score=28.07 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=36.0
Q ss_pred cCHHhHHHHhhhhhh--hhcCCCCcccCCCCcCCCCcccCCCCCCCCCCC----CCHHHHHHHHHHcCCCc
Q 041231 137 VSCADIVALAARGSV--VLSGGPSWELPLGRRDSRTASLSGSNSNIPPPN----STVQNLIASFKRQGLNE 201 (345)
Q Consensus 137 VScADilalAar~Av--~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~Gls~ 201 (345)
|.|-=.+.+....|+ ..+|-..|..+.||.|...-.... ...+|... ..+.++.+.|+..|+..
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T 224 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKT 224 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCc
Confidence 444333344333333 335888899999998763322111 11234332 24778888898888754
No 25
>PRK14758 hypothetical protein; Provisional
Probab=20.98 E-value=1.2e+02 Score=18.90 Aligned_cols=20 Identities=45% Similarity=0.788 Sum_probs=12.7
Q ss_pred hHHHHHHHHHH---HHHHhhhhh
Q 041231 3 FFKFAITLLLL---ALISARISL 22 (345)
Q Consensus 3 ~~~~~~~~~~~---~~~~~~~~~ 22 (345)
|.||-..|++| +++++++++
T Consensus 4 RYrFEliLivlIlCalia~~fy~ 26 (27)
T PRK14758 4 RYRFEFILIILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 56776665544 667777663
Done!