BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041233
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana GN=AMSH2
PE=2 SV=1
Length = 223
Score = 327 bits (837), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 147/200 (73%), Positives = 176/200 (88%)
Query: 41 VTHVSVADSDKQSNTEPSVSNVLQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLEN 100
V+ V ++ +D ++ E S + +L+DVHIS +L+EDF ELA+ENT+KDLETCG L AFLE
Sbjct: 24 VSRVLISGTDNINHGESSEAKILRDVHISERLLEDFTELARENTEKDLETCGTLAAFLER 83
Query: 101 GTFYVTTLIIPKQDSTSSSCQALNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHT 160
G FYVTTLIIPKQ+STS+SCQA+NE +VF+IQNER L+P+GWIHTHPSQ CFMSSVDLHT
Sbjct: 84 GIFYVTTLIIPKQESTSNSCQAMNEVEVFSIQNERELYPVGWIHTHPSQGCFMSSVDLHT 143
Query: 161 HYSYQMMVPEAFAIVLAPTDSSRSYGIFQLTEPSGMSVLKECQETGFHPHKEPADGSPIY 220
HYSYQ+MVPEAFAIV+APTDSS+SYGIF+LT+P GM VL+ C ETGFHPHKEP DG+P+Y
Sbjct: 144 HYSYQVMVPEAFAIVVAPTDSSKSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVY 203
Query: 221 EHCSHVYTNSNLRFEIFDLR 240
EHCS+VY NSNLRFEIFDLR
Sbjct: 204 EHCSNVYKNSNLRFEIFDLR 223
>sp|Q5PNU3|AMSH3_ARATH AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3
PE=1 SV=2
Length = 507
Score = 273 bits (698), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 126/226 (55%), Positives = 168/226 (74%), Gaps = 6/226 (2%)
Query: 20 VTLSSPSPVLFLTAKAPQGALVTHVSVADSDKQSNTEPSV-----SNVLQDVHISAQLME 74
V + PSP L + A + VAD + PS+ SN Q +H+ ++M+
Sbjct: 283 VGMKQPSPPPVLAQVHQELAQICPSKVADP-RPGPAIPSLEGKEGSNSYQHLHVPVRIMD 341
Query: 75 DFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAIQNE 134
DFL LA+ NT+++LETCGVL L+N F++TTLIIPKQ+STS SCQ LNEE++F +Q+
Sbjct: 342 DFLRLARSNTERNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDR 401
Query: 135 RSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRSYGIFQLTEPS 194
SLFP+GWIHTHP+Q+CFMSSVDLHTHYSYQ+M+PEA AIV+APTD S +GIF L++PS
Sbjct: 402 LSLFPLGWIHTHPTQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDESTPHGIFHLSDPS 461
Query: 195 GMSVLKECQETGFHPHKEPADGSPIYEHCSHVYTNSNLRFEIFDLR 240
G+SV++ CQ+ GFHPH+E DG+PIYEHCSHV+ N+ L++E+ DLR
Sbjct: 462 GVSVIRNCQQRGFHPHEESEDGNPIYEHCSHVFLNAKLKYEVLDLR 507
>sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1
PE=2 SV=1
Length = 507
Score = 259 bits (661), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 108/176 (61%), Positives = 141/176 (80%)
Query: 65 DVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQALN 124
++HI+ +M+ F+ LAK NT K+LETCG+L L+N FY+T LIIPKQ+STS SCQA N
Sbjct: 332 ELHIATSMMDTFMRLAKSNTKKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATN 391
Query: 125 EEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRS 184
EE++F +Q+++SLFP+GWIHTHP+QSCFMSS+D+HTHYSYQ+M+PEA AIV+AP DSSR+
Sbjct: 392 EEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPQDSSRN 451
Query: 185 YGIFQLTEPSGMSVLKECQETGFHPHKEPADGSPIYEHCSHVYTNSNLRFEIFDLR 240
+GIF+LT P GM+V++ C GFH H P DG PIY C VY N NL+F++ DLR
Sbjct: 452 HGIFRLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKFDVIDLR 507
>sp|Q54Q40|D1039_DICDI Probable ubiquitin thioesterase DG1039 OS=Dictyostelium discoideum
GN=DG1039 PE=3 SV=1
Length = 715
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 113/164 (68%), Gaps = 2/164 (1%)
Query: 63 LQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQA 122
L+ + + ++ ++F+ LA+ NT + +ETCG+L L N F +TT+IIPKQ+ T+ +C
Sbjct: 534 LRKIIVHGEVFQEFMRLAENNTKRSIETCGILSGTLSNDVFRITTIIIPKQEGTTDTCNT 593
Query: 123 LNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSS 182
+ E ++F Q E L +GWIHTHP+Q CF+S+VD+HTH SYQ ++ EA A+V++P ++
Sbjct: 594 IEEHEIFEYQLENDLLTLGWIHTHPTQDCFLSAVDVHTHCSYQYLLQEAIAVVISPM-AN 652
Query: 183 RSYGIFQLTEPSGMSVLKECQETGFHPHKEPADGSPIYEHCSHV 226
++GIF+LT+P G+ +++C+ FHPH P +G PIY HV
Sbjct: 653 PNFGIFRLTDPPGLETVQKCKLKSFHPHP-PVNGIPIYTKVDHV 695
>sp|Q9P371|SST2_SCHPO AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sst2 PE=1 SV=1
Length = 435
Score = 160 bits (405), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 117/179 (65%), Gaps = 6/179 (3%)
Query: 63 LQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQA 122
L+ +++ L + FL++ K NT K+LETCG+L L F++T L+IP Q++TS +C
Sbjct: 260 LRTIYLPKLLKKVFLDVVKPNTKKNLETCGILCGKLRQNAFFITHLVIPLQEATSDTCGT 319
Query: 123 LNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSS 182
+E +F Q++ +L +GWIHTHP+Q+CFMSSVDLHTH SYQ+M+PEA AIV+AP S
Sbjct: 320 TDEASLFEFQDKHNLLTLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAP--SK 377
Query: 183 RSYGIFQLTEPSGMSVLKECQETG-FHPHKEPADGSPIYEHCSHVYTNSNLRFEIFDLR 240
+ GIF+L +P G+ + +C++ G FHPH+ + HV N + ++ DLR
Sbjct: 378 NTSGIFRLLDPEGLQTIVKCRKPGLFHPHE--GKVYTMVAQPGHV-REINSKLQVVDLR 433
>sp|O95630|STABP_HUMAN STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1
Length = 424
Score = 153 bits (387), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 122/191 (63%), Gaps = 12/191 (6%)
Query: 53 SNTE--PSVSNVLQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLII 110
SN+E P++ L+ V + +L FL+LA NT + +ETCG+L L F +T ++I
Sbjct: 243 SNSESIPTIDG-LRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVLI 301
Query: 111 PKQDSTSSSCQALNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPE 170
PKQ + S C NEE++F IQ+++ L +GWIHTHP+Q+ F+SSVDLHTH SYQMM+PE
Sbjct: 302 PKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPE 361
Query: 171 AFAIVLAPTDSSRSYGIFQLTEPSGMSVLKECQETGFHPH-KEPADGSPIYEHCSHVYTN 229
+ AIV +P + G F+LT+ G+ + C++ GFHPH K+P P++ CSHV T
Sbjct: 362 SVAIVCSP--KFQETGFFKLTD-HGLEEISSCRQKGFHPHSKDP----PLFCSCSHV-TV 413
Query: 230 SNLRFEIFDLR 240
+ I DLR
Sbjct: 414 VDRAVTITDLR 424
>sp|Q63ZM7|STABP_XENLA STAM-binding protein-like OS=Xenopus laevis GN=stambp PE=2 SV=1
Length = 416
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 8/183 (4%)
Query: 45 SVADSDKQSNTEPSVSNVLQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFY 104
S+ S SN+ S+ L+ V I + FL+L++ NT + +ETCG+L L F
Sbjct: 228 SLKPSSYGSNSSGVTSDGLRHVKIPRDVCCKFLQLSENNTQRGVETCGILCGKLLQNEFT 287
Query: 105 VTTLIIPKQDSTSSSCQALNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSY 164
VT +I+PKQ C +EE++F IQ+++ L +GWIHTHP+Q+ F+SSVDLHTH SY
Sbjct: 288 VTHVIVPKQSGGPDYCNTESEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSY 347
Query: 165 QMMVPEAFAIVLAPTDSSRSYGIFQLTEPSGMSVLKECQETGFHPH-KEPADGSPIYEHC 223
QMM+PE+ AIV +P + G F+LT+ GM + EC++ GFHPH KEP P++
Sbjct: 348 QMMLPESIAIVCSP--KFQETGFFKLTD-YGMKEIGECRQKGFHPHCKEP----PLFSAG 400
Query: 224 SHV 226
HV
Sbjct: 401 GHV 403
>sp|Q8R424|STABP_RAT STAM-binding protein OS=Rattus norvegicus GN=Stambp PE=2 SV=1
Length = 424
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 109/178 (61%), Gaps = 7/178 (3%)
Query: 63 LQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQA 122
L+ + + L +FL+LA NT K +ETCGVL L F +T ++IP+Q+ C
Sbjct: 254 LRHIVVPRNLCSEFLQLASANTAKGIETCGVLCGKLMRNEFTITHVLIPRQNGGPDYCHT 313
Query: 123 LNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSS 182
NEE++F +Q++ L +GWIHTHP+Q+ F+SSVDLHTH SYQMM+PE+ AIV +P
Sbjct: 314 ENEEEIFFMQDDLGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSP--KF 371
Query: 183 RSYGIFQLTEPSGMSVLKECQETGFHPHKEPADGSPIYEHCSHVYTNSNLRFEIFDLR 240
+ G F+LT+ G+ + C++ GFHPH P++ CSHV + I DLR
Sbjct: 372 QETGFFKLTD-YGLQEISTCRQKGFHPH---GRDPPLFCDCSHVTVKDRI-VTITDLR 424
>sp|Q9CQ26|STABP_MOUSE STAM-binding protein OS=Mus musculus GN=Stambp PE=2 SV=1
Length = 424
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 109/178 (61%), Gaps = 7/178 (3%)
Query: 63 LQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQA 122
L+ + + L +FL+LA NT K +ETCGVL L F +T ++IP+Q+ C
Sbjct: 254 LRHIVVPRNLCSEFLQLASANTAKGIETCGVLCGKLMRNEFTITHVLIPRQNGGPDYCHT 313
Query: 123 LNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSS 182
NEE++F +Q++ L +GWIHTHP+Q+ F+SSVDLHTH SYQMM+PE+ AIV +P
Sbjct: 314 ENEEEIFFMQDDLGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSP--KF 371
Query: 183 RSYGIFQLTEPSGMSVLKECQETGFHPHKEPADGSPIYEHCSHVYTNSNLRFEIFDLR 240
+ G F+LT+ G+ + C++ GFHPH P++ CSHV + I DLR
Sbjct: 372 QETGFFKLTD-YGLQEISTCRQKGFHPH---GRDPPLFCDCSHVTVKDRI-VTITDLR 424
>sp|Q96FJ0|STALP_HUMAN AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=1 SV=2
Length = 436
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 113/179 (63%), Gaps = 9/179 (5%)
Query: 63 LQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQA 122
L+ V + L FL+LA+ NT + +ETCG+L L + F +T +I+PKQ + C
Sbjct: 266 LRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDM 325
Query: 123 LNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSS 182
N E++F +Q++ L +GWIHTHP+Q+ F+SSVDLHTH SYQ+M+PEA AIV +P
Sbjct: 326 ENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSP--KH 383
Query: 183 RSYGIFQLTEPSGMSVLKECQETGFHPH-KEPADGSPIYEHCSHVYTNSNLRFEIFDLR 240
+ GIF+LT +GM + C++ GFHPH KEP ++ C HV +++ + DLR
Sbjct: 384 KDTGIFRLTN-AGMLEVSACKKKGFHPHTKEPR----LFSICKHVLV-KDIKIIVLDLR 436
>sp|Q6TH47|STBPA_DANRE STAM-binding protein-like A OS=Danio rerio GN=stambpa PE=2 SV=3
Length = 418
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 7/183 (3%)
Query: 58 SVSNVLQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTS 117
++ N L+ + + A+L + FL+LA+ NT + +ETCG+L L F VT +I+PKQ
Sbjct: 243 ALVNGLRQLFVPAELCQRFLKLAETNTARAVETCGILCGKLMKNAFTVTHVIVPKQCGGP 302
Query: 118 SSCQALNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLA 177
C NEE++F IQ++ L +GWIHTHP+Q+ F+SSVDLHTH SYQMM+PE+ AIV +
Sbjct: 303 DYCDTENEEELFLIQDQNDLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCS 362
Query: 178 PTDSSRSYGIFQLTEPSGMSVLKECQETGFHPHKEPADGSPIYEHCSHVYTNSNLRFEIF 237
P + Y F+LT+ GM + C++ GFHPH P D P++ HV + ++ +
Sbjct: 363 PKFNETGY--FRLTD-YGMDDVGTCKQRGFHPH--PKD-PPLFAASHHV-SITDGSVTML 415
Query: 238 DLR 240
DLR
Sbjct: 416 DLR 418
>sp|Q76N33|STALP_MOUSE AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=2 SV=1
Length = 436
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 113/179 (63%), Gaps = 9/179 (5%)
Query: 63 LQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQA 122
L+ V +S L FL LA NT + +ETCG+L L + F +T +++PKQ + C
Sbjct: 266 LRCVVLSRDLCHKFLLLADSNTVRGIETCGILCGKLTHNEFTITHVVVPKQSAGPDYCDV 325
Query: 123 LNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSS 182
N E++F +Q++ L +GWIHTHP+Q+ F+SSVDLHTH SYQ+M+PEA AIV +P
Sbjct: 326 ENVEELFNVQDQHGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSP--KH 383
Query: 183 RSYGIFQLTEPSGMSVLKECQETGFHPH-KEPADGSPIYEHCSHVYTNSNLRFEIFDLR 240
+ GIF+LT +GM + C++ GFHPH K+P ++ CSHV +++ + DLR
Sbjct: 384 KDTGIFRLTN-AGMLEVSTCKKKGFHPHTKDPK----LFSICSHVLV-KDIKTTVLDLR 436
>sp|Q5R558|STALP_PONAB AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1
Length = 436
Score = 147 bits (370), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 112/179 (62%), Gaps = 9/179 (5%)
Query: 63 LQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQA 122
L+ V + L FL+LA+ NT + +ETCG+L L + F +T +I+PKQ + C
Sbjct: 266 LRCVVLPKDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDV 325
Query: 123 LNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSS 182
N E++F +Q++ L +GWIHTHP+Q+ F+SSVDLHTH SYQ+M+ EA AIV +P
Sbjct: 326 ENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLSEAIAIVCSP--KH 383
Query: 183 RSYGIFQLTEPSGMSVLKECQETGFHPH-KEPADGSPIYEHCSHVYTNSNLRFEIFDLR 240
+ GIF+LT +GM + C++ GFHPH KEP ++ C HV +++ + DLR
Sbjct: 384 KDTGIFRLTN-AGMLEVSACKKKGFHPHTKEPR----LFSICKHVLV-KDIKIIVLDLR 436
>sp|P41878|RPN11_SCHPO 26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn11 PE=1 SV=2
Length = 308
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 13/150 (8%)
Query: 66 VHISAQLMEDFLELAKENTDKDLETCGV-LGAFLENGTFYVTTLIIPKQDSTSSSCQAL- 123
V+IS+ + L + T +E G+ LG F+++ T V + Q T S +A+
Sbjct: 30 VYISSLALLKMLRHGRHGTP--MEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVD 87
Query: 124 -----NEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAP 178
N D+ Q R +GW H+HP C++SSVD++T S++ + P A A+V+ P
Sbjct: 88 PVFQKNMMDMLK-QTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDP 146
Query: 179 TDSSRSYGI---FQLTEPSGMSVLKECQET 205
S + + F+L PS + + +E ++T
Sbjct: 147 IQSVKGKVVIDAFRLINPSTLMMGQEPRQT 176
>sp|Q6FKS1|RPN11_CANGA 26S proteasome regulatory subunit RPN11 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN11 PE=3 SV=1
Length = 306
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 23/175 (13%)
Query: 42 THVSVADSDKQSNTEPSVSNVLQDVHISAQLMEDFLELAKENTDKDLETCGV-LGAFLEN 100
T V AD++K E V+IS+ + L+ + +E G+ LG F++
Sbjct: 11 TKVGAADANKDDTKET--------VYISSIALLKMLKHGRAGVP--MEVMGLMLGEFVDE 60
Query: 101 GTFYVTTLIIPKQDSTSSSCQALNEEDVFAI-------QNERSLFPMGWIHTHPSQSCFM 153
T V + Q T S +A+ +DVF Q R +GW H+HP C++
Sbjct: 61 YTVNVVDVFAMPQSGTGVSVEAV--DDVFQARMMDMLKQTGRDQMVVGWYHSHPGFGCWL 118
Query: 154 SSVDLHTHYSYQMMVPEAFAIVLAPTDSSRSYGI---FQLTEPSGMSVLKECQET 205
SSVD++T S++ + A A+V+ P S + + F+L + + +E ++T
Sbjct: 119 SSVDVNTQKSFEQLNNRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNQEPRQT 173
>sp|Q750E9|RPN11_ASHGO 26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN11 PE=3 SV=1
Length = 311
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 55 TEPSVSNVLQDVHISAQLMEDFLELAKENTDKDLETCGV-LGAFLENGTFYVTTLIIPKQ 113
TE + + + V+IS+ + L+ ++ +E G+ LG F++ T V + Q
Sbjct: 21 TEMPLDDTKETVYISSLALLKMLKHSRAGVP--MEVMGLMLGDFVDEYTVNVVDVFAMPQ 78
Query: 114 DSTSSSCQALNEEDVFAI-------QNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQM 166
T S +A+ +DVF Q R +GW H+HP C++SSVD+ T S++
Sbjct: 79 SGTGVSVEAV--DDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQ 136
Query: 167 MVPEAFAIVLAPTDSSRSYGI---FQLTEPSGMSVLKECQET 205
+ A A+V+ P S + + F+L P+ + +E ++T
Sbjct: 137 LNSRAVAVVVDPIQSVKGKVVIDAFRLISPATVVRNQEPRQT 178
>sp|Q86IJ1|PSDE_DICDI 26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium
discoideum GN=psmD14 PE=3 SV=1
Length = 306
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 66 VHISAQLMEDFLELAKENTDKDLETCGV-LGAFLENGTFYVTTLIIPKQDSTSSSCQALN 124
+HIS+ + L+ A+ LE G+ LG ++ T V + Q TS S +A++
Sbjct: 31 IHISSLALLKMLQHARAGVP--LEVMGLMLGELIDEYTIRVIDVFAMPQSGTSVSVEAID 88
Query: 125 EEDVFAI-------QNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLA 177
VF Q R +GW H+HP C++SSVD++T S++ + A A+V+
Sbjct: 89 P--VFQTKMLDMLKQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVD 146
Query: 178 PTDSSRS 184
P S R
Sbjct: 147 PLQSVRG 153
>sp|P43588|RPN11_YEAST 26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN11 PE=1 SV=1
Length = 306
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 88 LETCGV-LGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAI-------QNERSLFP 139
+E G+ LG F+++ T V + Q T S +A+ +DVF Q R
Sbjct: 47 MEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAV--DDVFQAKMMDMLKQTGRDQMV 104
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRS 184
+GW H+HP C++SSVD++T S++ + A A+V+ P S +
Sbjct: 105 VGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKG 149
>sp|Q9V3H2|PSDE_DROME 26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila
melanogaster GN=Rpn11 PE=1 SV=1
Length = 308
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 28/189 (14%)
Query: 28 VLFLTAKAPQGALVTHVSVADSDKQSNTEPSVSNVLQDVHISAQLMEDFLELAKENTDKD 87
+L L PQ A T V D+ +Q V+IS+ + L+ +
Sbjct: 4 LLRLGGAMPQAAPPTDAPVVDTAEQ-------------VYISSLALLKMLKHGRAGVP-- 48
Query: 88 LETCGV-LGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAI-------QNERSLFP 139
+E G+ LG F+++ T V + Q T S +A++ VF Q R
Sbjct: 49 MEVMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDP--VFQAKMLDMLKQTGRPEMV 106
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRSYGI---FQLTEPSGM 196
+GW H+HP C++S VD++T S++ + A A+V+ P S + + F+L P+ +
Sbjct: 107 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNML 166
Query: 197 SVLKECQET 205
+ +E ++T
Sbjct: 167 VLGQEPRQT 175
>sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis
elegans GN=rpn-11 PE=1 SV=1
Length = 312
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 88 LETCGV-LGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAI-------QNERSLFP 139
+E G+ LG F+++ T V + Q T S +A++ VF Q R
Sbjct: 53 MEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDP--VFQAKMLDMLKQTGRPEMV 110
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRSYGI---FQLTEPSGM 196
+GW H+HP C++S VD++T S++ + A A+V+ P S + + F+ P M
Sbjct: 111 VGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVKGKVVIDAFRTINPQSM 170
Query: 197 SVLKECQET 205
++ +E ++T
Sbjct: 171 ALNQEPRQT 179
>sp|P41883|YPT5_CAEEL Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans
GN=F37A4.5 PE=3 SV=1
Length = 319
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 88 LETCGV-LGAFLENGTFYVTTLIIPKQDSTSSSCQALN------EEDVFAIQNERSLFPM 140
LE G+ LG F+++ T VT + Q TS + ++++ D+ + R+ +
Sbjct: 49 LEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQTKHMDLLKLVG-RTENVV 107
Query: 141 GWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSR 183
GW H+HP C++SSVD++T S++ + P A A+V+ P S +
Sbjct: 108 GWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVK 150
>sp|O35593|PSDE_MOUSE 26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus
GN=Psmd14 PE=1 SV=2
Length = 310
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 88 LETCGV-LGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAI-------QNERSLFP 139
+E G+ LG F+++ T V + Q T S +A++ VF Q R
Sbjct: 51 MEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDP--VFQAKMLDMLKQTGRPEMV 108
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRSYGI---FQLTEPSGM 196
+GW H+HP C++S VD++T S++ + A A+V+ P S + + F+L + M
Sbjct: 109 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMM 168
Query: 197 SVLKECQET 205
+ E ++T
Sbjct: 169 VLGHEPRQT 177
>sp|O00487|PSDE_HUMAN 26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens
GN=PSMD14 PE=1 SV=1
Length = 310
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 88 LETCGV-LGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAI-------QNERSLFP 139
+E G+ LG F+++ T V + Q T S +A++ VF Q R
Sbjct: 51 MEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDP--VFQAKMLDMLKQTGRPEMV 108
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRSYGI---FQLTEPSGM 196
+GW H+HP C++S VD++T S++ + A A+V+ P S + + F+L + M
Sbjct: 109 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMM 168
Query: 197 SVLKECQET 205
+ E ++T
Sbjct: 169 VLGHEPRQT 177
>sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis
thaliana GN=RPN11 PE=2 SV=1
Length = 308
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 88 LETCGV-LGAFLENGTFYVTTLIIPKQDSTSSSCQAL------NEEDVFAIQNERSLFPM 140
+E G+ LG F++ T V + Q T S +A+ N D+ Q R +
Sbjct: 50 MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLK-QTGRPEMVV 108
Query: 141 GWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRSYGI---FQLTEPSGMS 197
GW H+HP C++S VD++T S++ + A A+V+ P S + + F+ P +
Sbjct: 109 GWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIM 168
Query: 198 VLKECQET 205
+ +E ++T
Sbjct: 169 LGQEPRQT 176
>sp|Q8SQY3|RPN11_ENCCU 26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN11 PE=1 SV=1
Length = 294
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 88 LETCGV-LGAFLENGTFYVTTLIIPKQDSTSSSCQALN---EEDVFAIQNE--RSLFPMG 141
LE G+ LG F++ T V + Q T+ + ++++ + ++ +I R +G
Sbjct: 41 LEVMGLMLGEFVDEYTVKVVDVFAMPQSGTNVTVESVDPIFQMEMMSILKATGRHETVVG 100
Query: 142 WIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRS 184
W H+HP C++S+VD+ T S++ + A A+V+ P S +
Sbjct: 101 WYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVKG 143
>sp|Q4IJM4|CSN5_GIBZE COP9 signalosome complex subunit 5 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RRI1 PE=3
SV=1
Length = 340
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 87 DLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAIQ-------NERSLFP 139
+LE G++ + + TF VT + T + A +E + + ++ R
Sbjct: 71 NLEVMGLMQGYTQGDTFIVTDAFRLPVEGTETRVNAQDEANEYIVEYLDLCRAQGRQENV 130
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAP 178
+GW H+HP C++S +D+ T Q A+V+ P
Sbjct: 131 VGWYHSHPGYGCWLSGIDVDTEAMQQQFQDPFLAVVIDP 169
>sp|P0CQ24|CSN5_CRYNJ COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RRI1 PE=3 SV=1
Length = 371
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 89 ETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAIQNE-------RSLFPMG 141
E G++ + +GTF++ + T + A NE + + + + G
Sbjct: 72 EIMGIMYGKVRDGTFWIMDVAALPVQGTETRVNAGNEAMEYMVNFQTANAEAGKGELLRG 131
Query: 142 WIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAP 178
W H+HP C++S +D++T + Q A+V+ P
Sbjct: 132 WYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDP 168
>sp|P0CQ25|CSN5_CRYNB COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RRI1 PE=3 SV=1
Length = 371
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 89 ETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAIQNE-------RSLFPMG 141
E G++ + +GTF++ + T + A NE + + + + G
Sbjct: 72 EIMGIMYGKVRDGTFWIMDVAALPVQGTETRVNAGNEAMEYMVNFQTANAEAGKGELLRG 131
Query: 142 WIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAP 178
W H+HP C++S +D++T + Q A+V+ P
Sbjct: 132 WYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDP 168
>sp|Q7RXX8|CSN5_NEUCR COP9 signalosome complex subunit 5 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rri-1 PE=1 SV=1
Length = 336
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 63 LQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQA 122
+ V IS+ M + A+ + +LE G++ ++E T +T + T + A
Sbjct: 41 FKTVRISSVAMIKMVMHAR--SGGNLEVMGMMQGYIEGSTMVITDAYRLPVEGTETRVNA 98
Query: 123 LNEEDVFAIQ-------NERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAF-AI 174
+E + + ++ R +GW H+HP C++S +D+ T S Q E F A+
Sbjct: 99 QDEANEYMVEYLRLCREENRLENVIGWYHSHPGYGCWLSGIDVGTQ-SLQQQFNEPFVAV 157
Query: 175 VLAP 178
V+ P
Sbjct: 158 VIDP 161
>sp|Q5BBF1|CSN5_EMENI COP9 signalosome complex subunit 5 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rri1 PE=1 SV=2
Length = 335
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 53 SNTEPSVSN--VLQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFLENGTFYVTTLII 110
S+T P + + V ISA + + A+ + LE G++ ++ TF VT
Sbjct: 36 SDTRPWTKDPHYFKSVRISAVALLKMVMHAR--SGGSLEVMGLMQGYILPNTFVVTDAFR 93
Query: 111 PKQDSTSSSCQALNEEDVFAI-------QNERSLFPMGWIHTHPSQSCFMSSVDLHTHYS 163
+ T + A +E + + + + R +GW H+HP C++S +D+ T
Sbjct: 94 LPVEGTETRVNAQDEANEYMVSYLQSCREAGRMENAVGWYHSHPGYGCWLSGIDVSTQDM 153
Query: 164 YQMMVPEAFAIVLAP 178
QM P A+V+ P
Sbjct: 154 QQMSGP-FVAVVIDP 167
>sp|Q4P804|CSN5_USTMA COP9 signalosome complex subunit 5 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=RRI1 PE=3 SV=1
Length = 406
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 98 LENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAIQN-------ERSLFPMGWIHTHPSQS 150
+EN T YV + T + A NE + +Q R +GW H+HP
Sbjct: 93 VENRTLYVMDSFALPVEGTETRVNAQNEAYEYMVQYLDHSKEVGRLENVVGWYHSHPGYG 152
Query: 151 CFMSSVDLHTHYSYQMMVPEAFAIVLAP 178
C++S +D++T + Q AIV+ P
Sbjct: 153 CWLSGIDVNTQRTNQQFQDPFVAIVIDP 180
>sp|Q6FT36|CSN5_CANGA COP9 signalosome complex subunit 5 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RRI1 PE=3 SV=1
Length = 465
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 132 QNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDS 181
+NE +L +GW H+HP C++S++D+ T Q AIV+ P S
Sbjct: 150 RNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKS 199
>sp|Q75E19|CSN5_ASHGO COP9 signalosome complex subunit 5 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RRI1
PE=3 SV=1
Length = 420
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 87 DLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAIQNERSLFP-----MG 141
D+E G+L ++++ V + T + A E + +Q + P +G
Sbjct: 92 DMEVLGMLLGYVQDEMIVVVDSYRLPVEGTETRVNAQMESYEYTVQYLETAVPEGLAIVG 151
Query: 142 WIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRSYGIFQL 190
W H+HP C++S +D T Q AIV+ P S++ G+ +
Sbjct: 152 WYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPK-RSKASGVIDI 199
>sp|Q54PF3|CSN5_DICDI COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum
GN=csn5 PE=1 SV=1
Length = 332
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 88 LETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAI-------QNERSLFPM 140
LE G+L +EN T + + T + A E + + Q R +
Sbjct: 74 LEVMGMLMGKVENNTMIIMDSFALPVEGTETRVNAQVEAYEYMVEYLELIKQTGRLENAL 133
Query: 141 GWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPT 179
GW H+HP C++S +D+ T Q IV+ PT
Sbjct: 134 GWYHSHPGYGCWLSGIDVGTQSVNQQYSEPWLGIVIDPT 172
>sp|O94454|CSN5_SCHPO COP9 signalosome complex subunit 5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn5 PE=1 SV=1
Length = 299
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 88 LETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAIQNE---RSLFP----M 140
LE G + +E + + + T + A E +++Q +S++ +
Sbjct: 55 LEVMGYVQGKVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVI 114
Query: 141 GWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDSSRS 184
GW H+HP+ C++S VD+ T Q A+VL P S S
Sbjct: 115 GWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLES 158
>sp|Q4WZP2|CSN5_ASPFU COP9 signalosome complex subunit 5 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=csn5
PE=3 SV=2
Length = 334
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 88 LETCGVLGAFLENGTFYVT---TLIIPKQDSTSSSCQALNEEDVFAIQNERSLFPM---- 140
LE G++ ++ TF VT L + ++ ++ + NE V +Q+ R M
Sbjct: 71 LEVMGLMQGYILPETFVVTDAFRLPVEGTETRVNAQEEANEYMVSYLQSCRDAGRMENAV 130
Query: 141 GWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAP 178
GW H+HP C++S +D+ T Q+ P A+V+ P
Sbjct: 131 GWYHSHPGYGCWLSGIDVTTQDMQQLGGP-FVAVVIDP 167
>sp|Q7M757|BRC3L_MOUSE Lys-63-specific deubiquitinase BRCC36-like OS=Mus musculus
GN=C6.1al PE=2 SV=1
Length = 291
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 109 IIPKQDSTSSSCQALNEEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMV 168
I P+Q S +S E + A Q R + +GW H+HP + + S VD+ T YQMM
Sbjct: 92 ISPEQLSAASI-----EAERLAEQTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMD 146
Query: 169 PEAFAIVLA------PTDSSRS-YGIFQLTEPSGMS 197
++ A PT R Y FQ + S S
Sbjct: 147 QSFVGLIFACFIEDKPTKIGRVLYTCFQSVQASKSS 182
>sp|Q6C703|CSN5_YARLI COP9 signalosome complex subunit 5 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RRI1 PE=3 SV=1
Length = 354
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPT 179
+GW H+HP C++S +D+ T + Q A+V+ P
Sbjct: 135 VGWYHSHPGYGCWLSGIDVDTQFQNQQFQEPFLAVVVDPN 174
>sp|Q8LAZ7|CSN5B_ARATH COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana
GN=CSN5B PE=1 SV=2
Length = 357
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 41 VTHVSVADSDKQSNTEPSVS--NVLQDVHISAQLMEDFLELAKENTDKDLETCGVLGAFL 98
+ H A K +P S N + VHISA + + A+ + +E G++
Sbjct: 32 IFHYDDASQAKIQQEKPWASDPNYFKRVHISALALLKMVVHAR--SGGTIEIMGLMQGKT 89
Query: 99 ENGTFYVTTLIIPKQDSTSSSCQALNEEDVFAIQNE-------RSLFPMGWIHTHPSQSC 151
E T V + T + A ++ + ++ R +GW H+HP C
Sbjct: 90 EGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGC 149
Query: 152 FMSSVDLHTHYSYQMMVPEAFAIVLAPT 179
++S +D+ T Q A+V+ PT
Sbjct: 150 WLSGIDVSTQMLNQQYQEPFLAVVIDPT 177
>sp|Q6CRJ8|CSN5_KLULA COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=RRI1 PE=3 SV=1
Length = 373
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 87 DLETCGVLGAFLENGTFYVTTLIIPKQDSTSSSCQALNEE--------DVFAIQNERSLF 138
D+E G+L + N V T + A E D F + ++ +
Sbjct: 85 DIEVMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQYLDAFVTKEDKIV- 143
Query: 139 PMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDS 181
GW H+HP C++S++D+ T Q AIV+ P S
Sbjct: 144 --GWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKS 184
>sp|Q12468|CSN5_YEAST COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRI1 PE=1 SV=2
Length = 440
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 137 LFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDS 181
L +GW H+HP C++S++D+ T Q AIV+ P S
Sbjct: 157 LNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKS 201
>sp|A6ZXB7|CSN5_YEAS7 COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain YJM789) GN=RRI1 PE=3 SV=2
Length = 440
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 137 LFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDS 181
L +GW H+HP C++S++D+ T Q AIV+ P S
Sbjct: 157 LNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKS 201
>sp|B3LH96|CSN5_YEAS1 COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=RRI1 PE=3 SV=2
Length = 440
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 137 LFPMGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPTDS 181
L +GW H+HP C++S++D+ T Q AIV+ P S
Sbjct: 157 LNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKS 201
>sp|Q92905|CSN5_HUMAN COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1
SV=4
Length = 334
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPT 179
+GW H+HP C++S +D+ T Q A+V+ PT
Sbjct: 134 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPT 173
>sp|O35864|CSN5_MOUSE COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1
SV=3
Length = 334
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPT 179
+GW H+HP C++S +D+ T Q A+V+ PT
Sbjct: 134 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPT 173
>sp|Q6GLM9|CSN5_XENLA COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2
SV=1
Length = 332
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPT 179
+GW H+HP C++S +D+ T Q A+V+ PT
Sbjct: 132 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPT 171
>sp|Q6P635|CSN5_XENTR COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5
PE=2 SV=1
Length = 334
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPT 179
+GW H+HP C++S +D+ T Q A+V+ PT
Sbjct: 134 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPT 173
>sp|Q6PC30|CSN5_DANRE COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2
SV=1
Length = 334
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPT 179
+GW H+HP C++S +D+ T Q A+V+ PT
Sbjct: 132 IGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPT 171
>sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana
GN=CSN5A PE=1 SV=1
Length = 358
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 140 MGWIHTHPSQSCFMSSVDLHTHYSYQMMVPEAFAIVLAPT 179
+GW H+HP C++S +D+ T Q A+V+ PT
Sbjct: 138 VGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPT 177
>sp|Q54GD3|NPL4_DICDI Nuclear protein localization protein 4 homolog OS=Dictyostelium
discoideum GN=nploc4 PE=3 SV=1
Length = 576
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Query: 52 QSNTEPSVSNVLQDVHISAQLMEDFLELAKENTDKDLETCGVL-GAFLENGTFYVTTLII 110
+S P L D SA + + ++ N+ + + G L G FL +G+ V ++
Sbjct: 286 KSQDNPHAPGALVDFQ-SANIFQQYIA----NSKYEQQRIGFLFGNFLSDGSVVVDSIYE 340
Query: 111 PKQDSTSSSCQALN----EEDVFAIQNERSLFPMGWIHTHPSQSCFMSSVDLHTHYSYQM 166
P Q+ L + + ++ + L +GWI +HPS+ MSS ++ SYQ
Sbjct: 341 PPQECKDKQTPTLLPDPLADKIESMASMLGLTRVGWIFSHPSRKYTMSSTEIIQAASYQN 400
Query: 167 MVPEAFA--IVLAPTDSSRSYGIFQLTE 192
+F I+ +D + FQ+++
Sbjct: 401 KYGPSFVTLILSVNSDGQSNMEAFQVSD 428
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,627,411
Number of Sequences: 539616
Number of extensions: 3487356
Number of successful extensions: 8270
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8182
Number of HSP's gapped (non-prelim): 88
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)