BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041235
         (362 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QW5|A Chain A, Crystal Structure Of A Putative Sugar Phosphate
           IsomeraseEPIMERASE (Ava4194) From Anabaena Variabilis
           Atcc 29413 At 1.78 A Resolution
 pdb|2QW5|B Chain B, Crystal Structure Of A Putative Sugar Phosphate
           IsomeraseEPIMERASE (Ava4194) From Anabaena Variabilis
           Atcc 29413 At 1.78 A Resolution
          Length = 335

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 138 RLPCNTSIYC--YNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDL-LPVAIYNFSTNSWR 194
           +LP  + IY   + F   L P   D++ +++  +   +R        P+A      N  +
Sbjct: 4   KLPATSDIYISFFXFTTNLQPDNLDYRRIVVAHIKKLQRFGYSGFEFPIAP-GLPENYAQ 62

Query: 195 DLEGLFQMGHYYGSDSTDNVYLN 217
           DLE    + HY  S+  +NV ++
Sbjct: 63  DLENYTNLRHYLDSEGLENVKIS 85


>pdb|2NX2|A Chain A, Crystal Structure Of Protein Ypsa From Bacillus Subtilis,
           Pfam Duf1273
          Length = 181

 Score = 28.5 bits (62), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 312 PLGFWRNGEFFLESSDNRLVLYDSRYE 338
           PL F +  +FF++ SD  L+LYD   E
Sbjct: 117 PLQFKQKNQFFIDKSDGLLLLYDPEKE 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,497,015
Number of Sequences: 62578
Number of extensions: 489204
Number of successful extensions: 838
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 2
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)