Query 041235
Match_columns 362
No_of_seqs 140 out of 1526
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 6.1E-34 1.3E-38 246.5 26.0 217 104-338 1-230 (230)
2 PLN03215 ascorbic acid mannose 99.6 1E-13 2.2E-18 124.5 23.8 320 1-359 1-372 (373)
3 PF07734 FBA_1: F-box associat 99.6 2.1E-14 4.5E-19 117.2 17.2 139 213-358 1-164 (164)
4 PF08268 FBA_3: F-box associat 99.6 2.6E-14 5.6E-19 111.8 14.6 106 213-324 1-118 (129)
5 PHA02713 hypothetical protein; 99.3 9.8E-11 2.1E-15 113.8 16.1 198 117-348 320-545 (557)
6 KOG4441 Proteins containing BT 99.2 4.6E-10 1E-14 108.8 18.1 193 117-344 349-554 (571)
7 PLN02153 epithiospecifier prot 99.2 5.2E-09 1.1E-13 96.1 20.8 207 117-344 50-292 (341)
8 PHA02713 hypothetical protein; 99.2 2.5E-09 5.4E-14 104.0 18.5 194 118-344 273-497 (557)
9 PHA03098 kelch-like protein; P 99.1 2.4E-09 5.3E-14 104.4 17.9 194 117-344 311-519 (534)
10 PLN02193 nitrile-specifier pro 99.1 1.1E-08 2.4E-13 97.8 21.0 207 117-345 193-419 (470)
11 PHA02790 Kelch-like protein; P 99.1 8.3E-09 1.8E-13 98.8 19.0 183 117-342 287-476 (480)
12 KOG4441 Proteins containing BT 99.1 4.9E-09 1.1E-13 101.8 16.6 195 117-344 301-507 (571)
13 PF12937 F-box-like: F-box-lik 98.9 2.3E-10 5E-15 72.2 1.2 43 4-46 1-43 (47)
14 TIGR03548 mutarot_permut cycli 98.9 2.4E-07 5.2E-12 84.4 18.8 150 181-344 88-287 (323)
15 TIGR03547 muta_rot_YjhT mutatr 98.9 4.7E-07 1E-11 83.4 20.2 203 117-344 29-306 (346)
16 PF00646 F-box: F-box domain; 98.8 6.2E-10 1.3E-14 70.7 -0.1 46 3-48 2-47 (48)
17 PRK14131 N-acetylneuraminic ac 98.8 3.7E-07 8E-12 84.9 18.3 217 105-344 35-328 (376)
18 PLN02153 epithiospecifier prot 98.8 7.8E-07 1.7E-11 81.7 18.6 153 181-345 50-234 (341)
19 PLN02193 nitrile-specifier pro 98.7 3.7E-06 8E-11 80.5 22.1 152 182-345 194-360 (470)
20 smart00256 FBOX A Receptor for 98.7 3.4E-09 7.3E-14 64.8 0.8 39 7-45 1-39 (41)
21 PHA03098 kelch-like protein; P 98.7 5.5E-07 1.2E-11 87.9 15.9 193 118-344 265-472 (534)
22 PHA02790 Kelch-like protein; P 98.6 1.5E-06 3.4E-11 83.3 15.5 143 181-344 287-431 (480)
23 PRK14131 N-acetylneuraminic ac 98.5 1.8E-05 3.8E-10 73.7 20.2 153 181-341 189-373 (376)
24 TIGR03548 mutarot_permut cycli 98.5 8.5E-06 1.8E-10 74.3 17.7 183 117-326 88-311 (323)
25 TIGR03547 muta_rot_YjhT mutatr 98.3 6.5E-05 1.4E-09 69.2 19.0 137 181-326 168-329 (346)
26 KOG4693 Uncharacterized conser 98.2 6E-05 1.3E-09 63.8 14.5 212 117-348 44-288 (392)
27 KOG1230 Protein containing rep 98.2 5.3E-05 1.1E-09 68.0 14.3 211 117-347 98-351 (521)
28 KOG4693 Uncharacterized conser 98.1 6.5E-05 1.4E-09 63.7 12.3 183 118-325 106-309 (392)
29 KOG0379 Kelch repeat-containin 97.6 0.0043 9.3E-08 59.6 17.4 208 118-347 89-312 (482)
30 KOG2120 SCF ubiquitin ligase, 97.6 1.5E-05 3.3E-10 68.8 0.7 40 3-42 97-136 (419)
31 KOG0379 Kelch repeat-containin 97.5 0.0055 1.2E-07 58.9 16.8 154 182-347 89-260 (482)
32 KOG1230 Protein containing rep 96.7 0.2 4.2E-06 45.8 16.4 145 182-337 99-276 (521)
33 PF02191 OLF: Olfactomedin-lik 96.3 0.33 7.1E-06 42.3 15.7 128 209-345 70-212 (250)
34 KOG0281 Beta-TrCP (transducin 96.1 0.0018 3.9E-08 57.0 0.7 42 5-46 76-121 (499)
35 KOG2997 F-box protein FBX9 [Ge 96.1 0.0018 4E-08 56.5 0.7 46 4-49 107-157 (366)
36 smart00284 OLF Olfactomedin-li 95.7 0.87 1.9E-05 39.5 15.2 128 209-345 75-217 (255)
37 TIGR01640 F_box_assoc_1 F-box 95.7 0.47 1E-05 40.7 14.0 121 215-346 3-137 (230)
38 PF13964 Kelch_6: Kelch motif 95.6 0.037 8.1E-07 34.8 5.1 40 211-250 5-47 (50)
39 PF08450 SGL: SMP-30/Gluconola 95.2 1.8 4E-05 37.4 21.8 197 105-346 8-223 (246)
40 PF13360 PQQ_2: PQQ-like domai 94.6 2.5 5.4E-05 36.1 17.6 194 107-343 35-237 (238)
41 PF01344 Kelch_1: Kelch motif; 94.3 0.12 2.6E-06 31.9 4.6 37 211-247 5-43 (47)
42 PF10282 Lactonase: Lactonase, 94.1 4.7 0.0001 37.0 21.3 170 149-344 146-332 (345)
43 PF07646 Kelch_2: Kelch motif; 93.6 0.26 5.7E-06 30.7 5.2 40 210-249 4-47 (49)
44 PF02897 Peptidase_S9_N: Proly 93.1 7.8 0.00017 36.5 19.2 119 214-344 284-412 (414)
45 PF13964 Kelch_6: Kelch motif 92.2 0.19 4.1E-06 31.5 3.1 23 116-138 27-49 (50)
46 KOG0274 Cdc4 and related F-box 91.5 15 0.00033 36.0 19.8 42 4-45 108-149 (537)
47 COG3055 Uncharacterized protei 91.4 2.2 4.7E-05 38.5 9.7 113 181-306 113-268 (381)
48 KOG1963 WD40 repeat protein [G 91.2 18 0.00039 36.5 18.0 100 232-341 432-544 (792)
49 PF13360 PQQ_2: PQQ-like domai 90.9 9.2 0.0002 32.5 15.2 112 213-343 32-147 (238)
50 KOG4341 F-box protein containi 89.6 0.11 2.5E-06 47.6 0.3 36 6-41 74-109 (483)
51 KOG3545 Olfactomedin and relat 89.2 12 0.00026 32.3 11.9 128 209-345 69-211 (249)
52 PF01344 Kelch_1: Kelch motif; 88.8 1.5 3.3E-05 26.7 5.1 30 315-344 8-44 (47)
53 PRK11138 outer membrane biogen 88.6 15 0.00032 34.4 13.8 106 211-342 250-359 (394)
54 KOG4152 Host cell transcriptio 88.1 20 0.00043 34.3 13.5 203 117-345 57-311 (830)
55 PF06433 Me-amine-dh_H: Methyl 88.0 6.5 0.00014 35.7 10.2 122 217-344 195-329 (342)
56 PF13418 Kelch_4: Galactose ox 86.5 1.2 2.6E-05 27.6 3.5 37 211-247 5-44 (49)
57 PF07762 DUF1618: Protein of u 86.0 8.3 0.00018 29.7 8.8 73 233-305 7-98 (131)
58 TIGR03300 assembly_YfgL outer 85.9 17 0.00037 33.6 12.5 109 212-342 100-214 (377)
59 PF10282 Lactonase: Lactonase, 85.6 29 0.00063 31.8 15.8 115 217-344 154-285 (345)
60 KOG0293 WD40 repeat-containing 84.9 22 0.00047 33.0 11.7 123 191-341 347-475 (519)
61 PF13418 Kelch_4: Galactose ox 84.7 3.5 7.5E-05 25.4 5.0 28 316-343 10-44 (49)
62 COG1520 FOG: WD40-like repeat 84.5 26 0.00056 32.4 12.9 107 213-343 64-178 (370)
63 TIGR03300 assembly_YfgL outer 84.3 25 0.00054 32.5 12.8 106 211-342 59-169 (377)
64 PF07893 DUF1668: Protein of u 83.8 35 0.00076 31.3 13.8 127 111-253 80-223 (342)
65 COG3055 Uncharacterized protei 83.2 37 0.00079 31.0 16.3 135 181-326 196-357 (381)
66 smart00612 Kelch Kelch domain. 83.1 4.1 8.9E-05 24.4 4.9 22 231-252 14-36 (47)
67 KOG0310 Conserved WD40 repeat- 82.5 44 0.00096 31.5 14.5 133 181-339 48-187 (487)
68 PRK11138 outer membrane biogen 82.3 18 0.00039 33.8 11.0 110 211-342 114-229 (394)
69 COG4257 Vgb Streptogramin lyas 81.3 28 0.00061 30.7 10.5 122 103-253 194-318 (353)
70 smart00564 PQQ beta-propeller 80.2 6.3 0.00014 21.7 4.5 26 317-342 5-30 (33)
71 PF13415 Kelch_3: Galactose ox 80.1 6.7 0.00015 24.2 5.1 36 218-253 2-41 (49)
72 PF07646 Kelch_2: Kelch motif; 79.1 4.6 0.0001 24.9 4.1 38 266-303 5-48 (49)
73 cd01206 Homer Homer type EVH1 77.9 5.2 0.00011 29.5 4.4 40 117-167 11-51 (111)
74 PF08450 SGL: SMP-30/Gluconola 76.3 49 0.0011 28.4 15.5 110 213-343 5-129 (246)
75 TIGR02658 TTQ_MADH_Hv methylam 76.2 65 0.0014 29.7 13.8 119 216-343 204-338 (352)
76 PF13570 PQQ_3: PQQ-like domai 75.7 5.3 0.00012 23.4 3.5 26 211-241 15-40 (40)
77 PF01011 PQQ: PQQ enzyme repea 74.7 6.2 0.00013 22.9 3.5 25 320-344 2-26 (38)
78 TIGR03075 PQQ_enz_alc_DH PQQ-d 74.4 91 0.002 30.6 14.0 118 211-343 63-196 (527)
79 TIGR03074 PQQ_membr_DH membran 74.3 87 0.0019 32.3 13.6 32 210-246 187-220 (764)
80 PF07250 Glyoxal_oxid_N: Glyox 74.1 55 0.0012 28.4 10.5 148 181-344 46-206 (243)
81 KOG2437 Muskelin [Signal trans 71.6 6.9 0.00015 37.1 4.7 149 120-280 232-393 (723)
82 COG2706 3-carboxymuconate cycl 70.4 85 0.0019 28.6 18.7 154 181-345 167-332 (346)
83 PF13415 Kelch_3: Galactose ox 70.0 5.3 0.00012 24.6 2.6 21 117-137 19-39 (49)
84 cd01207 Ena-Vasp Enabled-VASP- 69.7 13 0.00028 27.8 4.9 43 117-167 9-51 (111)
85 PF03088 Str_synth: Strictosid 69.3 11 0.00024 27.0 4.4 18 327-344 36-53 (89)
86 COG4946 Uncharacterized protei 69.1 1.1E+02 0.0024 29.2 12.9 112 213-344 327-439 (668)
87 KOG2502 Tub family proteins [G 68.0 3.4 7.3E-05 37.2 1.8 39 2-40 43-89 (355)
88 KOG2055 WD40 repeat protein [G 68.0 1.1E+02 0.0024 28.9 15.6 142 181-342 235-380 (514)
89 PLN02772 guanylate kinase 65.7 48 0.001 31.0 8.8 75 210-294 27-107 (398)
90 KOG0649 WD40 repeat protein [G 65.0 93 0.002 26.9 10.3 102 217-339 126-238 (325)
91 COG3386 Gluconolactonase [Carb 64.4 1.1E+02 0.0024 27.6 12.5 106 218-342 37-157 (307)
92 PRK11028 6-phosphogluconolacto 62.1 1.2E+02 0.0026 27.3 21.6 118 216-344 184-314 (330)
93 KOG0301 Phospholipase A2-activ 60.4 1.9E+02 0.0041 29.0 12.0 87 233-336 201-288 (745)
94 KOG0321 WD40 repeat-containing 59.0 55 0.0012 32.2 8.1 106 219-339 66-178 (720)
95 PF05096 Glu_cyclase_2: Glutam 58.5 1.3E+02 0.0028 26.5 14.5 112 216-346 54-168 (264)
96 PRK11028 6-phosphogluconolacto 58.4 1.4E+02 0.003 26.8 14.6 135 181-337 12-157 (330)
97 COG4257 Vgb Streptogramin lyas 57.9 1.4E+02 0.003 26.6 15.9 224 101-345 65-314 (353)
98 PF13013 F-box-like_2: F-box-l 53.4 5.2 0.00011 29.8 0.4 29 4-32 22-50 (109)
99 KOG0289 mRNA splicing factor [ 51.3 2.2E+02 0.0047 26.9 12.5 116 212-344 353-470 (506)
100 KOG0772 Uncharacterized conser 50.4 25 0.00055 33.5 4.3 73 269-347 372-457 (641)
101 KOG0649 WD40 repeat protein [G 46.4 87 0.0019 27.1 6.5 60 284-343 80-151 (325)
102 PF03178 CPSF_A: CPSF A subuni 46.2 2.2E+02 0.0048 25.5 13.5 73 265-344 91-167 (321)
103 PF08268 FBA_3: F-box associat 45.5 53 0.0011 25.1 5.0 31 316-346 3-38 (129)
104 KOG0294 WD40 repeat-containing 42.5 2.6E+02 0.0056 25.3 11.6 112 210-340 45-161 (362)
105 PLN02919 haloacid dehalogenase 41.7 4.9E+02 0.011 28.2 23.4 70 269-340 811-892 (1057)
106 COG2706 3-carboxymuconate cycl 41.6 2.8E+02 0.0061 25.4 15.1 116 217-345 155-285 (346)
107 KOG2437 Muskelin [Signal trans 40.7 66 0.0014 30.9 5.4 128 209-344 262-420 (723)
108 cd00216 PQQ_DH Dehydrogenases 40.5 3.5E+02 0.0076 26.2 11.6 31 211-246 55-87 (488)
109 PF12768 Rax2: Cortical protei 40.2 2.7E+02 0.0059 24.8 10.1 109 181-302 16-130 (281)
110 TIGR03866 PQQ_ABC_repeats PQQ- 39.9 2.5E+02 0.0053 24.2 20.6 112 216-342 124-243 (300)
111 KOG0639 Transducin-like enhanc 39.0 1.9E+02 0.0041 27.9 8.1 102 232-341 440-544 (705)
112 KOG0291 WD40-repeat-containing 39.0 4.5E+02 0.0097 27.0 13.1 123 211-338 249-382 (893)
113 cd00837 EVH1 EVH1 (Enabled, Va 38.9 66 0.0014 23.7 4.4 40 117-167 9-48 (104)
114 KOG0303 Actin-binding protein 38.2 3.4E+02 0.0074 25.4 11.9 113 215-339 182-297 (472)
115 KOG0279 G protein beta subunit 38.2 1.5E+02 0.0034 26.2 6.9 63 272-340 203-266 (315)
116 PTZ00420 coronin; Provisional 37.5 4.3E+02 0.0092 26.3 16.1 117 217-344 178-301 (568)
117 TIGR03866 PQQ_ABC_repeats PQQ- 37.4 2.7E+02 0.0058 24.0 22.6 121 217-348 167-292 (300)
118 KOG0306 WD40-repeat-containing 36.1 3.7E+02 0.008 27.5 9.8 92 233-337 44-138 (888)
119 PF07250 Glyoxal_oxid_N: Glyox 36.1 1.2E+02 0.0026 26.4 6.0 84 233-326 47-136 (243)
120 PLN00181 protein SPA1-RELATED; 35.6 5.2E+02 0.011 26.8 22.5 94 232-338 640-740 (793)
121 KOG0316 Conserved WD40 repeat- 35.6 3E+02 0.0064 23.9 14.0 180 108-340 28-217 (307)
122 COG3823 Glutamine cyclotransfe 35.5 1.3E+02 0.0028 25.5 5.8 79 267-348 50-132 (262)
123 PF00400 WD40: WD domain, G-be 35.0 85 0.0018 17.5 6.3 38 297-334 1-39 (39)
124 KOG0292 Vesicle coat complex C 34.4 1.3E+02 0.0027 31.3 6.6 70 269-339 212-283 (1202)
125 KOG0266 WD40 repeat-containing 34.3 4.2E+02 0.0092 25.3 12.8 107 217-339 214-321 (456)
126 PF07893 DUF1668: Protein of u 34.1 3.7E+02 0.0081 24.6 12.9 102 233-344 87-215 (342)
127 PLN02772 guanylate kinase 34.0 3.6E+02 0.0078 25.4 9.1 60 266-325 28-93 (398)
128 COG4946 Uncharacterized protei 34.0 4.4E+02 0.0095 25.4 12.5 30 317-346 276-305 (668)
129 KOG0295 WD40 repeat-containing 33.6 3.9E+02 0.0084 24.7 8.8 58 283-342 312-370 (406)
130 KOG0281 Beta-TrCP (transducin 33.4 3.9E+02 0.0084 24.6 11.4 68 210-294 322-389 (499)
131 KOG4152 Host cell transcriptio 33.4 66 0.0014 31.0 4.2 117 192-323 18-152 (830)
132 PF13088 BNR_2: BNR repeat-lik 31.8 3.4E+02 0.0073 23.5 15.1 126 183-323 136-275 (275)
133 KOG0289 mRNA splicing factor [ 31.7 4.6E+02 0.0099 24.9 11.9 61 283-345 367-429 (506)
134 KOG4649 PQQ (pyrrolo-quinoline 31.4 3.7E+02 0.008 23.8 13.9 46 186-243 80-126 (354)
135 KOG1920 IkappaB kinase complex 31.0 7.3E+02 0.016 27.1 15.1 66 233-305 267-334 (1265)
136 PF14339 DUF4394: Domain of un 30.9 1.7E+02 0.0038 25.2 6.1 53 107-165 37-92 (236)
137 PF00568 WH1: WH1 domain; Int 30.4 1.1E+02 0.0025 22.7 4.5 38 118-167 17-55 (111)
138 KOG0645 WD40 repeat protein [G 29.5 4E+02 0.0087 23.6 9.6 76 273-350 27-106 (312)
139 KOG0271 Notchless-like WD40 re 29.4 2.6E+02 0.0057 26.0 7.2 47 283-341 135-192 (480)
140 KOG4378 Nuclear protein COP1 [ 29.1 2.1E+02 0.0046 27.6 6.7 53 283-340 185-243 (673)
141 KOG3926 F-box proteins [Amino 27.8 34 0.00074 29.9 1.4 37 3-39 201-238 (332)
142 PF06058 DCP1: Dcp1-like decap 27.7 1.2E+02 0.0027 23.1 4.3 27 322-348 23-49 (122)
143 PF15525 DUF4652: Domain of un 27.1 3.7E+02 0.008 22.4 7.8 18 327-344 139-156 (200)
144 cd00200 WD40 WD40 domain, foun 27.1 3.6E+02 0.0079 22.3 19.8 93 233-340 158-253 (289)
145 PF13018 ESPR: Extended Signal 27.0 51 0.0011 17.1 1.4 16 120-135 7-22 (24)
146 KOG1310 WD40 repeat protein [G 26.7 3E+02 0.0065 27.0 7.3 112 107-241 60-179 (758)
147 KOG2106 Uncharacterized conser 26.7 6E+02 0.013 24.7 18.9 23 231-253 307-329 (626)
148 KOG0300 WD40 repeat-containing 26.7 2.3E+02 0.005 25.6 6.2 60 283-344 376-436 (481)
149 KOG1274 WD40 repeat protein [G 26.3 7.8E+02 0.017 25.8 15.2 155 150-340 17-172 (933)
150 PF14157 YmzC: YmzC-like prote 26.0 1.2E+02 0.0025 20.0 3.2 18 327-344 40-57 (63)
151 TIGR02658 TTQ_MADH_Hv methylam 26.0 5.3E+02 0.012 23.8 12.8 102 233-348 28-149 (352)
152 KOG2096 WD40 repeat protein [G 25.6 5.2E+02 0.011 23.6 11.3 34 311-344 191-225 (420)
153 PF12768 Rax2: Cortical protei 25.1 2.7E+02 0.0058 24.8 6.5 61 283-345 14-81 (281)
154 KOG2055 WD40 repeat protein [G 25.0 6.2E+02 0.013 24.3 10.6 132 181-336 280-417 (514)
155 KOG0973 Histone transcription 24.9 3.8E+02 0.0082 28.3 8.2 68 269-338 77-161 (942)
156 KOG1036 Mitotic spindle checkp 24.7 5.2E+02 0.011 23.3 11.7 90 233-339 76-166 (323)
157 PF15408 PH_7: Pleckstrin homo 24.0 22 0.00047 25.0 -0.4 23 22-44 77-99 (104)
158 KOG0265 U5 snRNP-specific prot 22.9 4.6E+02 0.0099 23.6 7.3 63 272-340 58-124 (338)
159 KOG1240 Protein kinase contain 22.8 4.2E+02 0.0091 28.9 8.0 55 283-339 1171-1228(1431)
160 PF14583 Pectate_lyase22: Olig 22.5 2.5E+02 0.0055 26.2 6.0 103 231-343 167-279 (386)
161 KOG1523 Actin-related protein 22.0 5E+02 0.011 23.6 7.4 61 283-343 30-93 (361)
162 KOG0283 WD40 repeat-containing 21.6 6E+02 0.013 26.0 8.6 53 283-341 430-486 (712)
163 PLN02919 haloacid dehalogenase 21.3 1.1E+03 0.023 25.7 24.3 122 217-344 694-841 (1057)
164 PTZ00420 coronin; Provisional 21.2 7.5E+02 0.016 24.6 9.4 55 283-340 146-201 (568)
165 PF02393 US22: US22 like; Int 20.9 1.8E+02 0.0039 21.8 4.2 26 319-344 82-107 (125)
166 KOG0278 Serine/threonine kinas 20.5 5.6E+02 0.012 22.5 7.1 109 213-337 106-214 (334)
167 PF07370 DUF1489: Protein of u 20.5 59 0.0013 25.2 1.3 29 213-241 43-71 (137)
168 PF07569 Hira: TUP1-like enhan 20.4 5.3E+02 0.012 21.8 9.7 74 268-344 17-103 (219)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=6.1e-34 Score=246.48 Aligned_cols=217 Identities=24% Similarity=0.404 Sum_probs=163.2
Q ss_pred eecccccEEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccE
Q 041235 104 LGPCDGIFCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPV 183 (362)
Q Consensus 104 ~~s~~GLl~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 183 (362)
++|||||||+.....++||||+||+++.||+++...... ....++||||+.+++||||++....... ....+
T Consensus 1 ~~sCnGLlc~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~---~~~~~~~G~d~~~~~YKVv~~~~~~~~~-----~~~~~ 72 (230)
T TIGR01640 1 VVPCDGLICFSYGKRLVVWNPSTGQSRWLPTPKSRRSNK---ESDTYFLGYDPIEKQYKVLCFSDRSGNR-----NQSEH 72 (230)
T ss_pred CcccceEEEEecCCcEEEECCCCCCEEecCCCCCccccc---ccceEEEeecccCCcEEEEEEEeecCCC-----CCccE
Confidence 479999999988788999999999999999865421111 0115899999999999999996432111 11689
Q ss_pred EEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCc-cEEEEEECCCceee-EecCCCCCCCCCCCCC
Q 041235 184 AIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYN-ASILSFSMSDEVFE-EIKGPNFPQITTYDES 261 (362)
Q Consensus 184 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~ 261 (362)
+||++++++||.++...... . ....+|++||++||++....+.. ..|++||+.+|+|+ .+++|.... .
T Consensus 73 ~Vys~~~~~Wr~~~~~~~~~--~--~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~------~ 142 (230)
T TIGR01640 73 QVYTLGSNSWRTIECSPPHH--P--LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS------D 142 (230)
T ss_pred EEEEeCCCCccccccCCCCc--c--ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc------c
Confidence 99999999999988522211 1 12349999999999997652222 37999999999999 589997651 1
Q ss_pred CCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC---CeeeEEEEecCC--Ccc---eeeEEEeeCCeEEEEEeC--Ce-E
Q 041235 262 EMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG---GFWTKHLSFGPF--MEA---YQPLGFWRNGEFFLESSD--NR-L 330 (362)
Q Consensus 262 ~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~---~~W~~~~~i~~~--~~~---~~~~~~~~~~~i~~~~~~--~~-l 330 (362)
......|++++|+|+++.......+++||+|++ .+|++.++|+.. ... ..++++..+|+|++.... .. +
T Consensus 143 ~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~ 222 (230)
T TIGR01640 143 SVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYI 222 (230)
T ss_pred cccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEE
Confidence 122457999999999999865446799999997 679999999842 122 347888889999887653 44 9
Q ss_pred EEEECCCC
Q 041235 331 VLYDSRYE 338 (362)
Q Consensus 331 ~~yd~~t~ 338 (362)
+.||++++
T Consensus 223 ~~y~~~~~ 230 (230)
T TIGR01640 223 FYYNVGEN 230 (230)
T ss_pred EEEeccCC
Confidence 99999985
No 2
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.64 E-value=1e-13 Score=124.47 Aligned_cols=320 Identities=15% Similarity=0.132 Sum_probs=163.2
Q ss_pred CCCCCCCCHHHHHHHHccCC-ccccccccccccchhhhcCCHHHHHHhhccCCCCce-EEEEeecCccCCCCCCCC----
Q 041235 1 MTGYRELSHDLLVETLSRLP-VKSLMRFRCVSKSWFSLLKDPNFIYKHLNRDDNMRL-MVRVTYENYDVKDPFNDL---- 74 (362)
Q Consensus 1 ~~~~~~LP~dll~~IL~rLp-~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~---- 74 (362)
|+.|++||+|||..|..||| ..++.|||+|||+||+.+.... +. ....++|+ ++...... . ....+
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-~~~~~~~~~~~~~~~~~--~--~~~~~~~~~ 72 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-NPFRTRPLILFNPINPS--E--TLTDDRSYI 72 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-CCcccccccccCcccCC--C--Ccccccccc
Confidence 89999999999999999997 6799999999999999987411 00 00111122 21000000 0 00000
Q ss_pred -ceeeeecCCCcceecccCCCccccCCceeeecccccEEEee----cCcEEEEeccccceecccCCCCCCCCCCc-ccee
Q 041235 75 -ITCFFLIPDKTLTDLHFQDLEAEMKDHNPLGPCDGIFCFFE----NENIYLWNVSMNEYRIVTKRKARLPCNTS-IYCY 148 (362)
Q Consensus 75 -~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~s~~GLl~~~~----~~~~~v~NP~T~~~~~LP~~~~~~~~~~~-~~~~ 148 (362)
....+.++. .+... . ...++..|+|.-.. ..++.+.||+++.-..+|+........+. ....
T Consensus 73 ~~~~~~ls~~-~~~r~-------~----~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~ 140 (373)
T PLN03215 73 SRPGAFLSRA-AFFRV-------T----LSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIRE 140 (373)
T ss_pred ccccceeeee-EEEEe-------e----cCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccc
Confidence 001111110 00000 0 01235678887754 36899999999997777653221111100 0000
Q ss_pred eeEE-eecCC---CCCeEEEEEEEEecCCcccccCCccEEEEEc------CCCCceecccCcccceeecCCCCccEEECc
Q 041235 149 NFGL-GLDPT---TNDFKLVLILTLYDGKRLSVHDLLPVAIYNF------STNSWRDLEGLFQMGHYYGSDSTDNVYLNG 218 (362)
Q Consensus 149 ~~~l-~~d~~---~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss------~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G 218 (362)
.+.+ +.+.. ...|+-+.+.....+++ .+...+.|+.. ..+.|+.++.. ...+ ...++++|
T Consensus 141 ~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~i~~~g~l~~w~~~~Wt~l~~~---~~~~----~DIi~~kG 210 (373)
T PLN03215 141 AYQVLDWAKRRETRPGYQRSALVKVKEGDN---HRDGVLGIGRDGKINYWDGNVLKALKQM---GYHF----SDIIVHKG 210 (373)
T ss_pred eEEEEecccccccccceeEEEEEEeecCCC---cceEEEEEeecCcEeeecCCeeeEccCC---Ccee----eEEEEECC
Confidence 1111 11100 00121111111100000 00012222221 24788877641 1122 56899999
Q ss_pred eEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecC---------------C
Q 041235 219 YCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEE---------------S 283 (362)
Q Consensus 219 ~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~---------------~ 283 (362)
.+|.+...+ .+.++|..-+ -+.+..+-... ...+.......|++..|+|.+|.... .
T Consensus 211 kfYAvD~~G-----~l~~i~~~l~-i~~v~~~i~~~--~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~ 282 (373)
T PLN03215 211 QTYALDSIG-----IVYWINSDLE-FSRFGTSLDEN--ITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSR 282 (373)
T ss_pred EEEEEcCCC-----eEEEEecCCc-eeeecceeccc--ccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccc
Confidence 999996655 6777774322 12221111000 00011113467899999999998742 1
Q ss_pred CCEEEEEEEcC--CeeeEEEEecCCC---cceeeEEE-------eeCCeEEEEEeCCeEEEEECCCCeEEEEEEe--ccc
Q 041235 284 GHSFSLWMMKG--GFWTKHLSFGPFM---EAYQPLGF-------WRNGEFFLESSDNRLVLYDSRYEEIRDLEIT--GIW 349 (362)
Q Consensus 284 ~~~~~iW~l~~--~~W~~~~~i~~~~---~~~~~~~~-------~~~~~i~~~~~~~~l~~yd~~t~~~~~i~~~--~~~ 349 (362)
...++|++++. .+|+++..++-.- +....+++ ...+.|||. ++....+||++.++...|... ...
T Consensus 283 t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-dd~~~~v~~~~dg~~~~~~~~~~~~~ 361 (373)
T PLN03215 283 TVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-EDTMPKVFKLDNGNGSSIETTISESS 361 (373)
T ss_pred eeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-CCCcceEEECCCCCccceEeecCccc
Confidence 25789999987 8999999887321 11112222 124556665 677788999999997776543 222
Q ss_pred cee-eeeeecc
Q 041235 350 FSV-NILKESL 359 (362)
Q Consensus 350 ~~~-~~y~~sl 359 (362)
.++ ..+.+|.
T Consensus 362 ~~~~~~~~~~~ 372 (373)
T PLN03215 362 QSSFEMFVPSF 372 (373)
T ss_pred cchheeecccc
Confidence 223 5666654
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.64 E-value=2.1e-14 Score=117.19 Aligned_cols=139 Identities=19% Similarity=0.310 Sum_probs=97.9
Q ss_pred cEEECceEEEEeecCCCC-ccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEE-EEcCeEEEEEecCCCCEEEE
Q 041235 213 NVYLNGYCYWVASGHNSY-NASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIG-IYDGSLSLLYSEESGHSFSL 289 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~-~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~i 289 (362)
+|++||++||++...... ...|++||+++|+| +.+++|... ........|. ..+|+||++........++|
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~------~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~I 74 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCN------DDDDDSVSLSVVRGDCLCVLYQCDETSKIEI 74 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCcc------CccCCEEEEEEecCCEEEEEEeccCCccEEE
Confidence 589999999999876321 22799999999999 889999887 2233455674 44789999987556667999
Q ss_pred EEEcC-----CeeeEEEEecCCCcc-------eeeEEEeeCCeEEEEEe---C----CeEEEEECCCCeEEEEEEeccc-
Q 041235 290 WMMKG-----GFWTKHLSFGPFMEA-------YQPLGFWRNGEFFLESS---D----NRLVLYDSRYEEIRDLEITGIW- 349 (362)
Q Consensus 290 W~l~~-----~~W~~~~~i~~~~~~-------~~~~~~~~~~~i~~~~~---~----~~l~~yd~~t~~~~~i~~~~~~- 349 (362)
|+|++ .+|+|.++|+..... ...+.+..++++++.-. . ..++.|+ +++.++++.+....
T Consensus 75 Wvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~ 153 (164)
T PF07734_consen 75 WVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSS 153 (164)
T ss_pred EEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCC
Confidence 99995 699999999843211 12334445566655432 1 4578888 77888888774322
Q ss_pred -cee-eeeeec
Q 041235 350 -FSV-NILKES 358 (362)
Q Consensus 350 -~~~-~~y~~s 358 (362)
.+. ..|+||
T Consensus 154 ~~~~~~~YvpS 164 (164)
T PF07734_consen 154 CWPSICNYVPS 164 (164)
T ss_pred CCCCEEEECCC
Confidence 223 788887
No 4
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.61 E-value=2.6e-14 Score=111.81 Aligned_cols=106 Identities=29% Similarity=0.485 Sum_probs=83.0
Q ss_pred cEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCC--CEEEEE
Q 041235 213 NVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESG--HSFSLW 290 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~--~~~~iW 290 (362)
++++||++||++.........|++||+++|+|+.|++|... ........|++++|+|+++...... ..++||
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~------~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iW 74 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDP------YSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIW 74 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeee------ccccCccEEEEeCCeEEEEEecCCCCcceEEEE
Confidence 58999999999987434567999999999999999999221 1234567899999999999886533 579999
Q ss_pred EEcC---CeeeEEEEecCCC-------cceeeEEEeeCCeEEEE
Q 041235 291 MMKG---GFWTKHLSFGPFM-------EAYQPLGFWRNGEFFLE 324 (362)
Q Consensus 291 ~l~~---~~W~~~~~i~~~~-------~~~~~~~~~~~~~i~~~ 324 (362)
+|+| .+|++...+.+.. ....++++.++|++++.
T Consensus 75 vLeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 75 VLEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred EeeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 9998 7899987754431 23567777788888877
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.28 E-value=9.8e-11 Score=113.76 Aligned_cols=198 Identities=8% Similarity=0.053 Sum_probs=127.7
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..++.+||.+++|..+|+++.+... .....++ + +|..++.. .+. .....+|+|+..+++|+.+
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~-------~~~~~~~---g--~IYviGG~-~~~----~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCR-------FSLAVID---D--TIYAIGGQ-NGT----NVERTIECYTMGDDKWKML 382 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhc-------eeEEEEC---C--EEEEECCc-CCC----CCCceEEEEECCCCeEEEC
Confidence 3578999999999999998753221 1111222 2 44444321 111 0114699999999999998
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCCC-------------------CccEEEEEECCCceeeEe-cCCCCCCCC
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS-------------------YNASILSFSMSDEVFEEI-KGPNFPQIT 256 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------~~~~il~fD~~~~~~~~i-~~P~~~~~~ 256 (362)
+..+. + . .....+.++|.+|.+++.... ....+.+||+.+++|+.+ ++|...
T Consensus 383 ~~mp~-~--r--~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r--- 454 (557)
T PHA02713 383 PDMPI-A--L--SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT--- 454 (557)
T ss_pred CCCCc-c--c--ccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc---
Confidence 76211 1 1 234678899999999874310 124699999999999877 444433
Q ss_pred CCCCCCCceeEEEEEcCeEEEEEecCCC----CEEEEEEEcC-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CC--
Q 041235 257 TYDESEMTSWRIGIYDGSLSLLYSEESG----HSFSLWMMKG-GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DN-- 328 (362)
Q Consensus 257 ~~~~~~~~~~~l~~~~g~L~l~~~~~~~----~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~-- 328 (362)
....+++.+|+|+++.+.... ..+..+..+. .+|+.+..++-... ...+.+ -+|+|++++. ++
T Consensus 455 -------~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~-~~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 455 -------IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTIL-HDNTIMMLHCYESYM 525 (557)
T ss_pred -------ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEE-ECCEEEEEeeeccee
Confidence 234678999999999875321 2334444444 58999887763221 222222 3788988865 22
Q ss_pred eEEEEECCCCeEEEEEEecc
Q 041235 329 RLVLYDSRYEEIRDLEITGI 348 (362)
Q Consensus 329 ~l~~yd~~t~~~~~i~~~~~ 348 (362)
.+-.||++|++|..+.-++.
T Consensus 526 ~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 526 LQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred ehhhcCcccccccchhhhcC
Confidence 48899999999998875544
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.24 E-value=4.6e-10 Score=108.82 Aligned_cols=193 Identities=14% Similarity=0.219 Sum_probs=132.0
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
+....+||.+++|..+|++...+ ..++.....+ ++..++.... ......+|.|+..++.|..+
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R----------~~~~v~~l~g--~iYavGG~dg-----~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKR----------SDFGVAVLDG--KLYAVGGFDG-----EKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred ceEEEecCCCCceeccCCccCcc----------ccceeEEECC--EEEEEecccc-----ccccccEEEecCCCCccccc
Confidence 47899999999999999988643 2233222223 3444432111 11115799999999999999
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCCC--CccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcC
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS--YNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDG 273 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g 273 (362)
+.... + . .....+.++|.+|-+++.... .-..+.+||+.+++|+.+ +++... ....++.++|
T Consensus 412 a~m~~-~-r---~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R----------~~~g~a~~~~ 476 (571)
T KOG4441|consen 412 APMLT-R-R---SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR----------SGFGVAVLNG 476 (571)
T ss_pred CCCCc-c-e---eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc----------ccceEEEECC
Confidence 88322 1 1 235688999999999986532 236899999999999887 566555 2345899999
Q ss_pred eEEEEEecCC---CCEEEEEEEcCCeeeEEEEecCCCcceeeEE-EeeCCeEEEEEe------CCeEEEEECCCCeEEEE
Q 041235 274 SLSLLYSEES---GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLG-FWRNGEFFLESS------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 274 ~L~l~~~~~~---~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~-~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i 343 (362)
+|+++.+... ..+++.+..+...|..+..+.... ...+ +.-++.+|++.. -..+-.||+++++|+..
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r---s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR---SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeEcccCcccc---ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 9999998764 334444444448999996665431 2222 224677777754 24588999999999987
Q ss_pred E
Q 041235 344 E 344 (362)
Q Consensus 344 ~ 344 (362)
.
T Consensus 554 ~ 554 (571)
T KOG4441|consen 554 T 554 (571)
T ss_pred C
Confidence 4
No 7
>PLN02153 epithiospecifier protein
Probab=99.17 E-value=5.2e-09 Score=96.08 Aligned_cols=207 Identities=11% Similarity=0.114 Sum_probs=118.8
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..++++||.+++|..+|+........ ..+++.....+ +++.+...... .....+++|+..+++|+.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~------~~~~~~~~~~~--~iyv~GG~~~~-----~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRIS------CLGVRMVAVGT--KLYIFGGRDEK-----REFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCc------cCceEEEEECC--EEEEECCCCCC-----CccCcEEEEECCCCEEEEe
Confidence 46899999999999998754211111 11111111122 34443211111 1114789999999999987
Q ss_pred ccC-c-ccceeecCCCCccEEECceEEEEeecCCC-------CccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeE
Q 041235 197 EGL-F-QMGHYYGSDSTDNVYLNGYCYWVASGHNS-------YNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWR 267 (362)
Q Consensus 197 ~~~-~-~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~ 267 (362)
+.. . ..+... ....++..+|.+|.+++.... .-..+.+||+.+++|+.++.+... ........
T Consensus 117 ~~~~~~~~p~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~------~~~r~~~~ 188 (341)
T PLN02153 117 TKLDEEGGPEAR--TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN------FEKRGGAG 188 (341)
T ss_pred ccCCCCCCCCCc--eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC------CCCCCcce
Confidence 652 1 011111 234568899999999875311 113588999999999987543211 00112235
Q ss_pred EEEEcCeEEEEEecC-----------CCCEEEEEEEcCCeeeEEEEecC-CCcceeeEEEeeCCeEEEEEeC--------
Q 041235 268 IGIYDGSLSLLYSEE-----------SGHSFSLWMMKGGFWTKHLSFGP-FMEAYQPLGFWRNGEFFLESSD-------- 327 (362)
Q Consensus 268 l~~~~g~L~l~~~~~-----------~~~~~~iW~l~~~~W~~~~~i~~-~~~~~~~~~~~~~~~i~~~~~~-------- 327 (362)
++..+|+|+++.... ....+.++.++...|+++..... +......-++.-++.||++...
T Consensus 189 ~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 268 (341)
T PLN02153 189 FAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGH 268 (341)
T ss_pred EEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccc
Confidence 677899999986531 01234444444489999875431 1111111122235777776441
Q ss_pred -------CeEEEEECCCCeEEEEE
Q 041235 328 -------NRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 328 -------~~l~~yd~~t~~~~~i~ 344 (362)
..++.||+++++|+.+.
T Consensus 269 ~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 269 LGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred cccccccccEEEEEcCccEEEecc
Confidence 26899999999999885
No 8
>PHA02713 hypothetical protein; Provisional
Probab=99.15 E-value=2.5e-09 Score=104.02 Aligned_cols=194 Identities=10% Similarity=0.157 Sum_probs=122.6
Q ss_pred cEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceecc
Q 041235 118 NIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLE 197 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 197 (362)
.+..+||.+++|..+++++.+... .+.+. ..+ +|+.++...... .....++.|+..++.|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~--------~~~a~--l~~--~IYviGG~~~~~----~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN--------YASAI--VDN--EIIIAGGYNFNN----PSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc--------eEEEE--ECC--EEEEEcCCCCCC----CccceEEEEECCCCeEeeCC
Confidence 467899999999999987753221 11111 112 344443211010 01147899999999998877
Q ss_pred cCcccceeecCCCCccEEECceEEEEeecCC-CCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCeE
Q 041235 198 GLFQMGHYYGSDSTDNVYLNGYCYWVASGHN-SYNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGSL 275 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L 275 (362)
..+ .+ . .....+.++|.+|.+++... .....+..||+.+++|+.+ ++|... .....+.++|+|
T Consensus 337 ~m~-~~--R--~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r----------~~~~~~~~~g~I 401 (557)
T PHA02713 337 PMI-KN--R--CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL----------SSYGMCVLDQYI 401 (557)
T ss_pred CCc-ch--h--hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc----------ccccEEEECCEE
Confidence 621 11 1 23467899999999998642 1234699999999999987 455444 233567899999
Q ss_pred EEEEecCC---------------------CCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeC-------
Q 041235 276 SLLYSEES---------------------GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSD------- 327 (362)
Q Consensus 276 ~l~~~~~~---------------------~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~------- 327 (362)
+++.+... ...+..+..+...|+.+..++.... ... .+.-+|+||+++..
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~-~~~~~~~IYv~GG~~~~~~~~ 479 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPG-VVSHKDDIYVVCDIKDEKNVK 479 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-cCc-EEEECCEEEEEeCCCCCCccc
Confidence 99987531 1233333333389998877653221 122 23347888887641
Q ss_pred CeEEEEECCC-CeEEEEE
Q 041235 328 NRLVLYDSRY-EEIRDLE 344 (362)
Q Consensus 328 ~~l~~yd~~t-~~~~~i~ 344 (362)
..+..||+++ ++|+.+.
T Consensus 480 ~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 480 TCIFRYNTNTYNGWELIT 497 (557)
T ss_pred eeEEEecCCCCCCeeEcc
Confidence 2367999999 8999765
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.14 E-value=2.4e-09 Score=104.38 Aligned_cols=194 Identities=13% Similarity=0.124 Sum_probs=122.9
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..++.+||.|++|..+|+++.+... ++... ..+ +++.++..... .....+++|+..+++|+..
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~--------~~~~~--~~~--~lyv~GG~~~~-----~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKN--------PGVTV--FNN--RIYVIGGIYNS-----ISLNTVESWKPGESKWREE 373 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCccccc--------ceEEE--ECC--EEEEEeCCCCC-----EecceEEEEcCCCCceeeC
Confidence 3689999999999999987643221 11111 112 34433321111 1114789999999999987
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCC--CCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcC
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHN--SYNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDG 273 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g 273 (362)
+..+ .+. ....++.++|.+|.+++... .....+..||+.+++|+.+ ++|... .....+..+|
T Consensus 374 ~~lp-~~r----~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----------~~~~~~~~~~ 438 (534)
T PHA03098 374 PPLI-FPR----YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----------YGGCAIYHDG 438 (534)
T ss_pred CCcC-cCC----ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----------cCceEEEECC
Confidence 7621 111 23456889999999987431 1135799999999999887 445433 1235677899
Q ss_pred eEEEEEecCCCC----EEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEE
Q 041235 274 SLSLLYSEESGH----SFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIR 341 (362)
Q Consensus 274 ~L~l~~~~~~~~----~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~ 341 (362)
+|+++.+..... .-.+|..+. .+|+++..++... .....++ -++.+++++. ...+..||+++++|+
T Consensus 439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 439 KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 999988653111 123666665 8999886554221 1222233 3788887754 246899999999998
Q ss_pred EEE
Q 041235 342 DLE 344 (362)
Q Consensus 342 ~i~ 344 (362)
.++
T Consensus 517 ~~~ 519 (534)
T PHA03098 517 LFC 519 (534)
T ss_pred ecC
Confidence 775
No 10
>PLN02193 nitrile-specifier protein
Probab=99.12 E-value=1.1e-08 Score=97.76 Aligned_cols=207 Identities=10% Similarity=0.080 Sum_probs=122.5
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..++++||.+++|..+|+........+ .......++ + +++.+....... ....+++|++.+++|+.+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~---~~~~~v~~~---~--~lYvfGG~~~~~-----~~ndv~~yD~~t~~W~~l 259 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSC---LGVRMVSIG---S--TLYVFGGRDASR-----QYNGFYSFDTTTNEWKLL 259 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcc---cceEEEEEC---C--EEEEECCCCCCC-----CCccEEEEECCCCEEEEc
Confidence 358999999999998876432111010 001111222 2 333332111110 114789999999999988
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCC-CCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeE
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHN-SYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSL 275 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L 275 (362)
+.....+... ....++..++.+|.++.... .....+.+||+.+++|+.++.|... ........++..+|++
T Consensus 260 ~~~~~~P~~R--~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~------~~~R~~~~~~~~~gki 331 (470)
T PLN02193 260 TPVEEGPTPR--SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDS------FSIRGGAGLEVVQGKV 331 (470)
T ss_pred CcCCCCCCCc--cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCC------CCCCCCcEEEEECCcE
Confidence 6621111111 23456788999999987542 1234688999999999988654322 1111234567789999
Q ss_pred EEEEecCCCCEEEEEEEcC--CeeeEEEEec--CCCcceeeEEEeeCCeEEEEEeC---------------CeEEEEECC
Q 041235 276 SLLYSEESGHSFSLWMMKG--GFWTKHLSFG--PFMEAYQPLGFWRNGEFFLESSD---------------NRLVLYDSR 336 (362)
Q Consensus 276 ~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~i~~~~~~---------------~~l~~yd~~ 336 (362)
+++........-++|+++. .+|+++..+. |..... .-++.-++.|++.... ..+..||++
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSV-FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcce-eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 9988753222345666654 8999987653 211111 2223346777776431 248999999
Q ss_pred CCeEEEEEE
Q 041235 337 YEEIRDLEI 345 (362)
Q Consensus 337 t~~~~~i~~ 345 (362)
|++|+.+..
T Consensus 411 t~~W~~~~~ 419 (470)
T PLN02193 411 TLQWERLDK 419 (470)
T ss_pred cCEEEEccc
Confidence 999998863
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.09 E-value=8.3e-09 Score=98.84 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=120.1
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
.....+||.+++|..+|+++.+.... .+...+ + ++..++.. ... ..++.|+..+++|..+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~-------~~v~~~---~--~iYviGG~-~~~-------~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYA-------SGVPAN---N--KLYVVGGL-PNP-------TSVERWFHGDAAWVNM 346 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcc-------eEEEEC---C--EEEEECCc-CCC-------CceEEEECCCCeEEEC
Confidence 35778999999999999887533211 111222 2 34444321 111 3679999999999988
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEec-CCCCCCCCCCCCCCCceeEEEEEcCeE
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIK-GPNFPQITTYDESEMTSWRIGIYDGSL 275 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~L 275 (362)
+..+ .+. ....++.++|.+|.+++... ....+..||+.+++|+.++ +|... .....+..+|+|
T Consensus 347 ~~l~-~~r----~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~~r----------~~~~~~~~~~~I 410 (480)
T PHA02790 347 PSLL-KPR----CNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYYPH----------YKSCALVFGRRL 410 (480)
T ss_pred CCCC-CCC----cccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCCcc----------ccceEEEECCEE
Confidence 7622 111 23567899999999988542 2346889999999999874 34332 224567899999
Q ss_pred EEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEE
Q 041235 276 SLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 276 ~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~ 342 (362)
+++.. ..+++..+...|+.+..++.... ....+ .-+|+|++++. ...+..||+++++|+-
T Consensus 411 Yv~GG-----~~e~ydp~~~~W~~~~~m~~~r~-~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 411 FLVGR-----NAEFYCESSNTWTLIDDPIYPRD-NPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEECC-----ceEEecCCCCcEeEcCCCCCCcc-ccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 99864 24555555589998876653221 22222 24788888764 1458899999999974
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.07 E-value=4.9e-09 Score=101.76 Aligned_cols=195 Identities=13% Similarity=0.160 Sum_probs=134.0
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..+..+||.+++|..+.+++.+.. ..+.+.-. + +|..++.... +......++.|++.+++|..+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~--------~~~~~~~~--~--~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC--------RVGVAVLN--G--KLYVVGGYDS----GSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc--------cccEEEEC--C--EEEEEccccC----CCcccceEEEecCCCCceecc
Confidence 467899999999999999885432 22233211 2 4444432111 111226899999999999997
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCC-CCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCe
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHN-SYNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGS 274 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~ 274 (362)
+...... .....+.++|.+|.+++... ..-..+..||+.+++|+.+ +++... .....++.+|+
T Consensus 365 a~M~~~R-----~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r----------~~~gv~~~~g~ 429 (571)
T KOG4441|consen 365 APMNTKR-----SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR----------SGHGVAVLGGK 429 (571)
T ss_pred CCccCcc-----ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce----------eeeEEEEECCE
Confidence 7722111 23567899999999998762 3345799999999999987 466533 34577999999
Q ss_pred EEEEEecCCC----CEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEEEE
Q 041235 275 LSLLYSEESG----HSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 275 L~l~~~~~~~----~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i~ 344 (362)
|+++.+.... .+++.+......|+.+..|..... ...+++ -++.||.++. ...+-.||+++++|..+.
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-GFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-cceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 9999986522 455666555599999998874322 222333 4788888765 234889999999999886
No 13
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.95 E-value=2.3e-10 Score=72.21 Aligned_cols=43 Identities=23% Similarity=0.484 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHccCCccccccccccccchhhhcCCHHHHHH
Q 041235 4 YRELSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDPNFIYK 46 (362)
Q Consensus 4 ~~~LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~ 46 (362)
|..||+|++.+||+.||.+++.++++|||+|+.++.++.+-+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5789999999999999999999999999999999987755443
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.87 E-value=2.4e-07 Score=84.43 Aligned_cols=150 Identities=9% Similarity=0.071 Sum_probs=96.9
Q ss_pred ccEEEEEcCCCCc----eecccCcccceeecCCCCccEEECceEEEEeecCC-CCccEEEEEECCCceeeEec-CCCCCC
Q 041235 181 LPVAIYNFSTNSW----RDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHN-SYNASILSFSMSDEVFEEIK-GPNFPQ 254 (362)
Q Consensus 181 ~~~~vyss~~~~W----~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~~~~~~i~-~P~~~~ 254 (362)
..++.|+..++.| +.++. ++... ....++.++|.+|.+++... .....+.+||+.+++|+.++ +|...+
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~---lp~~~--~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r 162 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGN---LPFTF--ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR 162 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCC---CCcCc--cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence 4688899999988 33333 22211 23567889999999987531 12357999999999999884 664221
Q ss_pred CCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCC---Cc-ceeeEEEeeCCeEEEEEeC-
Q 041235 255 ITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPF---ME-AYQPLGFWRNGEFFLESSD- 327 (362)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~---~~-~~~~~~~~~~~~i~~~~~~- 327 (362)
....++..+|+|+++.........+++..+. .+|+++..+... .. ......+..++.|+++...
T Consensus 163 ---------~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 163 ---------VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ---------CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 2235578899999998754333345566654 899987655311 01 1111122235777776431
Q ss_pred -------------------------------------CeEEEEECCCCeEEEEE
Q 041235 328 -------------------------------------NRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 328 -------------------------------------~~l~~yd~~t~~~~~i~ 344 (362)
..+..||+++++|..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 234 KDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred HHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 46999999999999875
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.86 E-value=4.7e-07 Score=83.37 Aligned_cols=203 Identities=15% Similarity=0.166 Sum_probs=118.7
Q ss_pred CcEEEEec--cccceecccCCCC-CCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCc-ccccCCccEEEEEcCCCC
Q 041235 117 ENIYLWNV--SMNEYRIVTKRKA-RLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKR-LSVHDLLPVAIYNFSTNS 192 (362)
Q Consensus 117 ~~~~v~NP--~T~~~~~LP~~~~-~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~-~~~~~~~~~~vyss~~~~ 192 (362)
..++++++ .+++|..+|+++. .+. .++++. ..+ +|..+........ ........++.|+..+++
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~--------~~~~~~--~~~--~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRN--------QAVAAA--IDG--KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcc--------cceEEE--ECC--EEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 46778774 6788999998763 211 112221 112 3443332111000 000011478999999999
Q ss_pred ceecccCcccceeecCCCCccE-EECceEEEEeecCCC-----------------------------------CccEEEE
Q 041235 193 WRDLEGLFQMGHYYGSDSTDNV-YLNGYCYWVASGHNS-----------------------------------YNASILS 236 (362)
Q Consensus 193 W~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~-----------------------------------~~~~il~ 236 (362)
|+.++.+.+.. . ....++ .++|.||.+++.... ....+..
T Consensus 97 W~~~~~~~p~~--~--~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (346)
T TIGR03547 97 WQKLDTRSPVG--L--LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLS 172 (346)
T ss_pred EecCCCCCCCc--c--cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEE
Confidence 99987422211 1 112234 689999999875310 0147999
Q ss_pred EECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecC--CCCEEEEEEE--cC--CeeeEEEEecCCCc-
Q 041235 237 FSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEE--SGHSFSLWMM--KG--GFWTKHLSFGPFME- 308 (362)
Q Consensus 237 fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~--~~~~~~iW~l--~~--~~W~~~~~i~~~~~- 308 (362)
||+.+++|+.+ ++|... .....++..+|+|+++.... ......+|.. +. ..|+++..++....
T Consensus 173 YDp~t~~W~~~~~~p~~~---------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~ 243 (346)
T TIGR03547 173 YDPSTNQWRNLGENPFLG---------TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS 243 (346)
T ss_pred EECCCCceeECccCCCCc---------CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCC
Confidence 99999999987 455322 02345678899999998753 1223445544 33 69998887753211
Q ss_pred ----ceeeEEEeeCCeEEEEEeC-----------------------CeEEEEECCCCeEEEEE
Q 041235 309 ----AYQPLGFWRNGEFFLESSD-----------------------NRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 309 ----~~~~~~~~~~~~i~~~~~~-----------------------~~l~~yd~~t~~~~~i~ 344 (362)
......+.-+++|+++... ..+-.||+++++|+.+.
T Consensus 244 ~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 244 SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 1111123347888877541 14679999999998764
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.82 E-value=6.2e-10 Score=70.71 Aligned_cols=46 Identities=37% Similarity=0.555 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHccCCccccccccccccchhhhcCCHHHHHHhh
Q 041235 3 GYRELSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDPNFIYKHL 48 (362)
Q Consensus 3 ~~~~LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~ 48 (362)
+|..||+|++.+||.+|+.+++.+++.|||+|+.++.++.+...+.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 3568999999999999999999999999999999999998876553
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.82 E-value=3.7e-07 Score=84.92 Aligned_cols=217 Identities=14% Similarity=0.129 Sum_probs=122.7
Q ss_pred ecccccEEEee---cCcEEEEecc--ccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccC
Q 041235 105 GPCDGIFCFFE---NENIYLWNVS--MNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHD 179 (362)
Q Consensus 105 ~s~~GLl~~~~---~~~~~v~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~ 179 (362)
...++-|.+.. ...++++++. +++|..+|+++..... .++.+. ..+...|++.... .........
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~-------~~~~v~--~~~~IYV~GG~~~-~~~~~~~~~ 104 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPRE-------QAVAAF--IDGKLYVFGGIGK-TNSEGSPQV 104 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcc-------cceEEE--ECCEEEEEcCCCC-CCCCCceeE
Confidence 33455444432 3456777765 5789999876531111 111111 1233334432110 000000001
Q ss_pred CccEEEEEcCCCCceecccCcccceeecCCCCccEE-ECceEEEEeecCCC-----------------------------
Q 041235 180 LLPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVY-LNGYCYWVASGHNS----------------------------- 229 (362)
Q Consensus 180 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~----------------------------- 229 (362)
...+++|+..+++|+.++...+.+. ....++. .+|.||.+++....
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~----~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~ 180 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGL----AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDK 180 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcc----cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcC
Confidence 1468999999999999875222111 1123344 79999999875310
Q ss_pred ------CccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecC--CCCEEEEEEE--cC--Ce
Q 041235 230 ------YNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEE--SGHSFSLWMM--KG--GF 296 (362)
Q Consensus 230 ------~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~--~~~~~~iW~l--~~--~~ 296 (362)
....+..||+.+++|+.+ ++|... .....++..+++|+++.... .....++|.. +. ..
T Consensus 181 ~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~---------~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
T PRK14131 181 KPEDYFFNKEVLSYDPSTNQWKNAGESPFLG---------TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLK 251 (376)
T ss_pred ChhhcCcCceEEEEECCCCeeeECCcCCCCC---------CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcc
Confidence 014699999999999987 455322 12335677899999998743 2344556644 32 79
Q ss_pred eeEEEEecCCCc------ceeeEEEeeCCeEEEEEeCC-----------------------eEEEEECCCCeEEEEE
Q 041235 297 WTKHLSFGPFME------AYQPLGFWRNGEFFLESSDN-----------------------RLVLYDSRYEEIRDLE 344 (362)
Q Consensus 297 W~~~~~i~~~~~------~~~~~~~~~~~~i~~~~~~~-----------------------~l~~yd~~t~~~~~i~ 344 (362)
|+++..++.... .....+..-+++|+++.... .+-.||+++++|+.+.
T Consensus 252 W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 252 WQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred eeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 999887753221 11111233467888765311 2457999999998764
No 18
>PLN02153 epithiospecifier protein
Probab=98.77 E-value=7.8e-07 Score=81.71 Aligned_cols=153 Identities=10% Similarity=0.145 Sum_probs=96.2
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCC-CccEEEEEECCCceeeEec-C-----CCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS-YNASILSFSMSDEVFEEIK-G-----PNFP 253 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~il~fD~~~~~~~~i~-~-----P~~~ 253 (362)
..+++|+..++.|+..+.....+... ......+.++|.+|.+++.... ....+.+||+.+++|+.++ + |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRIS-CLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCc-cCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 36899999999999876522111110 0124568889999999875421 1246899999999999874 2 2222
Q ss_pred CCCCCCCCCCceeEEEEEcCeEEEEEecCCCC------E-EEEEEEc--CCeeeEEEEecC--CCcceeeEEEeeCCeEE
Q 041235 254 QITTYDESEMTSWRIGIYDGSLSLLYSEESGH------S-FSLWMMK--GGFWTKHLSFGP--FMEAYQPLGFWRNGEFF 322 (362)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~------~-~~iW~l~--~~~W~~~~~i~~--~~~~~~~~~~~~~~~i~ 322 (362)
....++..+++|+++....... . -++++++ ..+|+.+..+.. .......+++ -+++++
T Consensus 129 ----------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iy 197 (341)
T PLN02153 129 ----------TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIW 197 (341)
T ss_pred ----------eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEE
Confidence 2445678899999988753111 1 1355554 389998765431 1111112222 367776
Q ss_pred EEEe--------------CCeEEEEECCCCeEEEEEE
Q 041235 323 LESS--------------DNRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 323 ~~~~--------------~~~l~~yd~~t~~~~~i~~ 345 (362)
++.. ...+..||+++++|+.+..
T Consensus 198 v~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 198 VVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred EEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 6532 2468999999999998864
No 19
>PLN02193 nitrile-specifier protein
Probab=98.72 E-value=3.7e-06 Score=80.48 Aligned_cols=152 Identities=11% Similarity=0.161 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCC-CCccEEEEEECCCceeeEec-C---CCCCCCC
Q 041235 182 PVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHN-SYNASILSFSMSDEVFEEIK-G---PNFPQIT 256 (362)
Q Consensus 182 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~~~~~~i~-~---P~~~~~~ 256 (362)
.+++|+.++++|..++.....|... .....++.+++.+|.++.... .....+.+||+.+++|+.+. + |...
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~-~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R--- 269 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLS-CLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR--- 269 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCc-ccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc---
Confidence 5899999999999765421122100 012456789999999987542 12346899999999999874 3 3222
Q ss_pred CCCCCCCceeEEEEEcCeEEEEEecCC---CCEEEEEEEcCCeeeEEEEecC-CC-cceeeEEEeeCCeEEEEEe-----
Q 041235 257 TYDESEMTSWRIGIYDGSLSLLYSEES---GHSFSLWMMKGGFWTKHLSFGP-FM-EAYQPLGFWRNGEFFLESS----- 326 (362)
Q Consensus 257 ~~~~~~~~~~~l~~~~g~L~l~~~~~~---~~~~~iW~l~~~~W~~~~~i~~-~~-~~~~~~~~~~~~~i~~~~~----- 326 (362)
....++..+++|+++..... ...+.++.++..+|+.+..... .. .....+.+ -+++++++..
T Consensus 270 -------~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~ 341 (470)
T PLN02193 270 -------SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCE 341 (470)
T ss_pred -------cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCc
Confidence 23456778999999987542 2233344344489987654221 11 11122222 3677776643
Q ss_pred CCeEEEEECCCCeEEEEEE
Q 041235 327 DNRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 327 ~~~l~~yd~~t~~~~~i~~ 345 (362)
...+..||+++++|+.+..
T Consensus 342 ~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 342 VDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred cCceEEEECCCCEEEEecc
Confidence 2569999999999998864
No 20
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.71 E-value=3.4e-09 Score=64.81 Aligned_cols=39 Identities=44% Similarity=0.801 Sum_probs=36.6
Q ss_pred CCHHHHHHHHccCCccccccccccccchhhhcCCHHHHH
Q 041235 7 LSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDPNFIY 45 (362)
Q Consensus 7 LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 45 (362)
||+|++.+||.+|+.+++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887754
No 21
>PHA03098 kelch-like protein; Provisional
Probab=98.69 E-value=5.5e-07 Score=87.94 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=118.3
Q ss_pred cEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceecc
Q 041235 118 NIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLE 197 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 197 (362)
.+.-+|+.+++|..+++.+.... ..+...+ + +++.++... ... .....+..|+..+++|...+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~--~lyv~GG~~-~~~---~~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYC--------FGSVVLN---N--VIYFIGGMN-KNN---LSVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred eeeecchhhhhcccccCcccccc--------ceEEEEC---C--EEEEECCCc-CCC---CeeccEEEEeCCCCeeeECC
Confidence 35567888999988876543110 0111111 1 344332111 110 00136889999999998876
Q ss_pred cCcccceeecCCCCccEEECceEEEEeecCC-CCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCeE
Q 041235 198 GLFQMGHYYGSDSTDNVYLNGYCYWVASGHN-SYNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGSL 275 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L 275 (362)
..+ .+. .....+.++|.+|.+++... .....+..||+.+++|+.+ ++|... .....+..+|+|
T Consensus 328 ~~~-~~R----~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r----------~~~~~~~~~~~i 392 (534)
T PHA03098 328 ELI-YPR----KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR----------YNPCVVNVNNLI 392 (534)
T ss_pred CCC-ccc----ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC----------ccceEEEECCEE
Confidence 622 111 23567889999999988652 1234688999999999987 455433 223567789999
Q ss_pred EEEEecCC----CCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeC---------CeEEEEECCCCeEEE
Q 041235 276 SLLYSEES----GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSD---------NRLVLYDSRYEEIRD 342 (362)
Q Consensus 276 ~l~~~~~~----~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~---------~~l~~yd~~t~~~~~ 342 (362)
+++.+... ...+.++..+..+|+.+..++... ....++..++.+++++.. ..+..||+++++|+.
T Consensus 393 Yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 393 YVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH--YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred EEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc--cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 99987431 134444444448999876654221 122233357788776531 248999999999998
Q ss_pred EE
Q 041235 343 LE 344 (362)
Q Consensus 343 i~ 344 (362)
+.
T Consensus 471 ~~ 472 (534)
T PHA03098 471 LS 472 (534)
T ss_pred CC
Confidence 75
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=98.59 E-value=1.5e-06 Score=83.30 Aligned_cols=143 Identities=11% Similarity=0.079 Sum_probs=102.0
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEe-cCCCCCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEI-KGPNFPQITTYD 259 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~ 259 (362)
..++.|+..++.|..++..+. +. .....+.++|.+|.+++... ...+..||+.+++|+.+ ++|...
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~-~r----~~~~~v~~~~~iYviGG~~~--~~sve~ydp~~n~W~~~~~l~~~r------ 353 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNS-PR----LYASGVPANNKLYVVGGLPN--PTSVERWFHGDAAWVNMPSLLKPR------ 353 (480)
T ss_pred CeEEEEECCCCEEEECCCCCc-hh----hcceEEEECCEEEEECCcCC--CCceEEEECCCCeEEECCCCCCCC------
Confidence 468899999999999887321 11 12456889999999998642 24688999999999887 455433
Q ss_pred CCCCceeEEEEEcCeEEEEEecC-CCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCC
Q 041235 260 ESEMTSWRIGIYDGSLSLLYSEE-SGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYE 338 (362)
Q Consensus 260 ~~~~~~~~l~~~~g~L~l~~~~~-~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~ 338 (362)
.....++++|+|+++.+.. ....+..+..+...|+.+..++... .....+.-+|+|++++ +....||++++
T Consensus 354 ----~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--~~~~~~~~~~~IYv~G--G~~e~ydp~~~ 425 (480)
T PHA02790 354 ----CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--YKSCALVFGRRLFLVG--RNAEFYCESSN 425 (480)
T ss_pred ----cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--ccceEEEECCEEEEEC--CceEEecCCCC
Confidence 2346789999999998754 2345677766569999876665322 1222334578888875 34678999999
Q ss_pred eEEEEE
Q 041235 339 EIRDLE 344 (362)
Q Consensus 339 ~~~~i~ 344 (362)
+|+.+.
T Consensus 426 ~W~~~~ 431 (480)
T PHA02790 426 TWTLID 431 (480)
T ss_pred cEeEcC
Confidence 999775
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.53 E-value=1.8e-05 Score=73.71 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=93.1
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCC----CCccEEEEEECCCceeeEe-cCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHN----SYNASILSFSMSDEVFEEI-KGPNFPQI 255 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~~il~fD~~~~~~~~i-~~P~~~~~ 255 (362)
..+++|+..++.|+.++..+..+. .....+.++|.||.+++... ........||+.+.+|..+ ++|....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~----~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~- 263 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGT----AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG- 263 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCC----CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc-
Confidence 368999999999998776221111 23456788999999987431 1123455678899999876 4554320
Q ss_pred CCCCCCCCceeEEEEEcCeEEEEEecCCC--------------------CEEEEEEEcCCeeeEEEEecCCCcceeeEEE
Q 041235 256 TTYDESEMTSWRIGIYDGSLSLLYSEESG--------------------HSFSLWMMKGGFWTKHLSFGPFMEAYQPLGF 315 (362)
Q Consensus 256 ~~~~~~~~~~~~l~~~~g~L~l~~~~~~~--------------------~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 315 (362)
............+..+|+|+++...... ..++++..+...|+++..++.... ...++
T Consensus 264 -~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~--~~~av 340 (376)
T PRK14131 264 -GSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA--YGVSV 340 (376)
T ss_pred -CCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc--ceEEE
Confidence 0000011112246789999998864210 134566666689998876653221 12244
Q ss_pred eeCCeEEEEEeC-------CeEEEEECCCCeEE
Q 041235 316 WRNGEFFLESSD-------NRLVLYDSRYEEIR 341 (362)
Q Consensus 316 ~~~~~i~~~~~~-------~~l~~yd~~t~~~~ 341 (362)
.-+++||++... ..+..|+++++.+.
T Consensus 341 ~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 341 SWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred EeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 457888887641 35788888877654
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.52 E-value=8.5e-06 Score=74.27 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=104.0
Q ss_pred CcEEEEeccccce----ecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCC
Q 041235 117 ENIYLWNVSMNEY----RIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNS 192 (362)
Q Consensus 117 ~~~~v~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~ 192 (362)
..++.+|+.+++| ..+|+++.+.... .+..++ + +|+.+....... . ...+++|+..++.
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-------~~~~~~---~--~iYv~GG~~~~~--~---~~~v~~yd~~~~~ 150 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENG-------SACYKD---G--TLYVGGGNRNGK--P---SNKSYLFNLETQE 150 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCc-------eEEEEC---C--EEEEEeCcCCCc--c---CceEEEEcCCCCC
Confidence 4688899999987 6777766432211 112222 2 344433211111 0 1478999999999
Q ss_pred ceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecC-CCCCCCCCCCCCC-CceeEEEE
Q 041235 193 WRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKG-PNFPQITTYDESE-MTSWRIGI 270 (362)
Q Consensus 193 W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~-P~~~~~~~~~~~~-~~~~~l~~ 270 (362)
|+.++..+..+. .....+.++|.+|.+++........+.+||+.+++|+.++- +... .... .....++.
T Consensus 151 W~~~~~~p~~~r----~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-----~p~~~~~~~~~~~ 221 (323)
T TIGR03548 151 WFELPDFPGEPR----VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDS-----EPISLLGAASIKI 221 (323)
T ss_pred eeECCCCCCCCC----CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCC-----CceeccceeEEEE
Confidence 998875211111 22445789999999987542222357899999999998742 2110 0000 11223455
Q ss_pred EcCeEEEEEecCC-----------------------------------CCEEEEEEEcCCeeeEEEEecCCCcceeeEEE
Q 041235 271 YDGSLSLLYSEES-----------------------------------GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGF 315 (362)
Q Consensus 271 ~~g~L~l~~~~~~-----------------------------------~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 315 (362)
.+++|+++..... ...+.++......|+.+..++........+..
T Consensus 222 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~ 301 (323)
T TIGR03548 222 NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLL 301 (323)
T ss_pred CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEE
Confidence 5788988876531 13445555555899998765422222222332
Q ss_pred eeCCeEEEEEe
Q 041235 316 WRNGEFFLESS 326 (362)
Q Consensus 316 ~~~~~i~~~~~ 326 (362)
-+++|+++..
T Consensus 302 -~~~~iyv~GG 311 (323)
T TIGR03548 302 -TGNNIFSING 311 (323)
T ss_pred -ECCEEEEEec
Confidence 3677877654
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.34 E-value=6.5e-05 Score=69.17 Aligned_cols=137 Identities=16% Similarity=0.180 Sum_probs=83.6
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCC--CccEEEEE--ECCCceeeEe-cCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS--YNASILSF--SMSDEVFEEI-KGPNFPQI 255 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~f--D~~~~~~~~i-~~P~~~~~ 255 (362)
..+++|+..+++|+.++..+..+. .....+.++|+||.+++.... ....+..| |..+++|+.+ ++|....
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~- 242 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGT----AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKS- 242 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcC----CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCC-
Confidence 468999999999999876221111 124567889999999875311 11234445 4577799876 4553220
Q ss_pred CCCCCCCCceeEEEEEcCeEEEEEecCC--------------------CCEEEEEEEcCCeeeEEEEecCCCcceeeEEE
Q 041235 256 TTYDESEMTSWRIGIYDGSLSLLYSEES--------------------GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGF 315 (362)
Q Consensus 256 ~~~~~~~~~~~~l~~~~g~L~l~~~~~~--------------------~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 315 (362)
. ..........+..+|+|+++..... ...+++|..+...|+.+..++... .....+
T Consensus 243 -~-~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~--~~~~~~ 318 (346)
T TIGR03547 243 -S-SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL--AYGVSV 318 (346)
T ss_pred -C-ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc--eeeEEE
Confidence 0 0011112346788999999987421 025778888778999988775432 122233
Q ss_pred eeCCeEEEEEe
Q 041235 316 WRNGEFFLESS 326 (362)
Q Consensus 316 ~~~~~i~~~~~ 326 (362)
.-+++|+++..
T Consensus 319 ~~~~~iyv~GG 329 (346)
T TIGR03547 319 SWNNGVLLIGG 329 (346)
T ss_pred EcCCEEEEEec
Confidence 34788887754
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.24 E-value=6e-05 Score=63.85 Aligned_cols=212 Identities=11% Similarity=0.126 Sum_probs=124.1
Q ss_pred CcEEEEeccccceecccCCCCCC-CCC--CccceeeeEEeecCCCCCeEEEEEEEE---ecCCcccccCCccEEEEEcCC
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARL-PCN--TSIYCYNFGLGLDPTTNDFKLVLILTL---YDGKRLSVHDLLPVAIYNFST 190 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~-~~~--~~~~~~~~~l~~d~~~~~ykvv~~~~~---~~~~~~~~~~~~~~~vyss~~ 190 (362)
-.+.+.|-.+-+|..+||--... ... ....+.++| ..||..... +.+..+.++-...+.-|+.++
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYG---------HtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t 114 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYG---------HTVVEYQDKAYVWGGRNDDEGACNLLYEFDPET 114 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcC---------ceEEEEcceEEEEcCccCcccccceeeeecccc
Confidence 46899999999999999832211 111 001111111 123322211 222222222225678899999
Q ss_pred CCceecccCcccceeecCCCCccEEECceEEEEeecCCC---CccEEEEEECCCceeeEec---CCCCCCCCCCCCCCCc
Q 041235 191 NSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS---YNASILSFSMSDEVFEEIK---GPNFPQITTYDESEMT 264 (362)
Q Consensus 191 ~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---~~~~il~fD~~~~~~~~i~---~P~~~~~~~~~~~~~~ 264 (362)
+.|+..+...-.|-.. ....++.++..+|-+++-.+. -..-+.++|+.|.+|+.+. -|+..+ .
T Consensus 115 ~~W~~p~v~G~vPgaR--DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR---------D 183 (392)
T KOG4693|consen 115 NVWKKPEVEGFVPGAR--DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR---------D 183 (392)
T ss_pred ccccccceeeecCCcc--CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh---------h
Confidence 9999877622122111 456778889999998864321 1236889999999999884 455541 2
Q ss_pred eeEEEEEcCeEEEEEecC------------CCCEEEEEEEcCCeeeEEEEecCCC-cceeeEEEeeCCeEEEEEe-----
Q 041235 265 SWRIGIYDGSLSLLYSEE------------SGHSFSLWMMKGGFWTKHLSFGPFM-EAYQPLGFWRNGEFFLESS----- 326 (362)
Q Consensus 265 ~~~l~~~~g~L~l~~~~~------------~~~~~~iW~l~~~~W~~~~~i~~~~-~~~~~~~~~~~~~i~~~~~----- 326 (362)
+....+++|..+++.... -..++..-.++.+.|.....-.... +-.....+.-+|++++...
T Consensus 184 FH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l 263 (392)
T KOG4693|consen 184 FHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL 263 (392)
T ss_pred hhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhh
Confidence 334466677777776532 1234444444448888763222111 2222333445888887754
Q ss_pred ---CCeEEEEECCCCeEEEEEEecc
Q 041235 327 ---DNRLVLYDSRYEEIRDLEITGI 348 (362)
Q Consensus 327 ---~~~l~~yd~~t~~~~~i~~~~~ 348 (362)
-+.++.||++|..|+.|..+|.
T Consensus 264 n~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 264 NVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred hhhhcceeecccccchheeeeccCC
Confidence 3669999999999999998764
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.21 E-value=5.3e-05 Score=68.01 Aligned_cols=211 Identities=15% Similarity=0.213 Sum_probs=125.4
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCC--cccccCCccEEEEEcCCCCce
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGK--RLSVHDLLPVAIYNFSTNSWR 194 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~--~~~~~~~~~~~vyss~~~~W~ 194 (362)
..+|++|--+..|+.+-.+..+.+.. .+.++..++. + +..++...... ....| -....+|++.+..|.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRs------shq~va~~s~--~-l~~fGGEfaSPnq~qF~H-YkD~W~fd~~trkwe 167 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRS------SHQAVAVPSN--I-LWLFGGEFASPNQEQFHH-YKDLWLFDLKTRKWE 167 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCc------cceeEEeccC--e-EEEeccccCCcchhhhhh-hhheeeeeeccchhe
Confidence 36899999999999885443322222 3344444433 2 22222222221 11111 146789999999999
Q ss_pred eccc-CcccceeecCCCCccEEECceEEEEeecCC-----CCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE
Q 041235 195 DLEG-LFQMGHYYGSDSTDNVYLNGYCYWVASGHN-----SYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI 268 (362)
Q Consensus 195 ~~~~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-----~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l 268 (362)
.+.. -.+.+. ..+.+|...-.|.-+++-+. .+-.-+.+||+++=+|+.+..+... +.-..-.++
T Consensus 168 ql~~~g~PS~R----SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~------PtpRSGcq~ 237 (521)
T KOG1230|consen 168 QLEFGGGPSPR----SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAG------PTPRSGCQF 237 (521)
T ss_pred eeccCCCCCCC----ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCC------CCCCCcceE
Confidence 9876 222221 22445555554444443321 2345699999999999988654321 111123355
Q ss_pred EEE-cCeEEEEEecC----------CCCEEEEEEEcC-------CeeeEEEEec--CCCcceeeEEEeeCCeEEEEEe--
Q 041235 269 GIY-DGSLSLLYSEE----------SGHSFSLWMMKG-------GFWTKHLSFG--PFMEAYQPLGFWRNGEFFLESS-- 326 (362)
Q Consensus 269 ~~~-~g~L~l~~~~~----------~~~~~~iW~l~~-------~~W~~~~~i~--~~~~~~~~~~~~~~~~i~~~~~-- 326 (362)
.+. .|.+.+-..+. ....-++|.|+. ..|+++..+. |.......++++.+++-++...
T Consensus 238 ~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~ 317 (521)
T KOG1230|consen 238 SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC 317 (521)
T ss_pred EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee
Confidence 555 78887776542 344568999987 4688877665 3334566778888866544322
Q ss_pred -------------CCeEEEEECCCCeEEEEEEec
Q 041235 327 -------------DNRLVLYDSRYEEIRDLEITG 347 (362)
Q Consensus 327 -------------~~~l~~yd~~t~~~~~i~~~~ 347 (362)
.+.|+.||+..++|..-++++
T Consensus 318 D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 318 DLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred cccccchhhhhhhhhhhhheecccchhhHhhhcc
Confidence 256999999999998766554
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.12 E-value=6.5e-05 Score=63.66 Aligned_cols=183 Identities=12% Similarity=0.184 Sum_probs=111.6
Q ss_pred cEEEEeccccceecccCCCCC--CCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 118 NIYLWNVSMNEYRIVTKRKAR--LPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~--~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
.++-++|-|.+|...--...- ..++ ..++.+| ++-.|++..++... ... -.+++++..+..|+.
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDG----HsAcV~g-----n~MyiFGGye~~a~--~FS---~d~h~ld~~TmtWr~ 171 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVPGARDG----HSACVWG-----NQMYIFGGYEEDAQ--RFS---QDTHVLDFATMTWRE 171 (392)
T ss_pred eeeeeccccccccccceeeecCCccCC----ceeeEEC-----cEEEEecChHHHHH--hhh---ccceeEeccceeeee
Confidence 578889999999864221110 0011 1133333 34444443321111 111 356788889999999
Q ss_pred ccc---CcccceeecCCCCccEEECceEEEEeecCC----------CCccEEEEEECCCceeeEecCCCCCCCCCCCCCC
Q 041235 196 LEG---LFQMGHYYGSDSTDNVYLNGYCYWVASGHN----------SYNASILSFSMSDEVFEEIKGPNFPQITTYDESE 262 (362)
Q Consensus 196 ~~~---~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----------~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~ 262 (362)
+.+ |+.+. .-..++..+|.+|-++++.. .+...|+++|+.|+.|..-+--... ..+
T Consensus 172 ~~Tkg~PprwR-----DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~------P~G 240 (392)
T KOG4693|consen 172 MHTKGDPPRWR-----DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK------PGG 240 (392)
T ss_pred hhccCCCchhh-----hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC------CCc
Confidence 876 33322 33567788899999987651 2467899999999999765211111 223
Q ss_pred CceeEEEEEcCeEEEEEecC---CCCEEEEEEEcC--CeeeEEEEecCC-CcceeeEEEeeCCeEEEEE
Q 041235 263 MTSWRIGIYDGSLSLLYSEE---SGHSFSLWMMKG--GFWTKHLSFGPF-MEAYQPLGFWRNGEFFLES 325 (362)
Q Consensus 263 ~~~~~l~~~~g~L~l~~~~~---~~~~~~iW~l~~--~~W~~~~~i~~~-~~~~~~~~~~~~~~i~~~~ 325 (362)
.......++||+++++.... ...--++|.++. ..|+++..-+-. ..-.+--++..++++++..
T Consensus 241 RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFG 309 (392)
T KOG4693|consen 241 RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFG 309 (392)
T ss_pred ccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEec
Confidence 34567799999999998875 233458899988 889988765421 1223334444567776654
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.63 E-value=0.0043 Score=59.61 Aligned_cols=208 Identities=12% Similarity=0.093 Sum_probs=121.6
Q ss_pred cEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceecc
Q 041235 118 NIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLE 197 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 197 (362)
+++++|-.+..|...+...... .. ..+....... + +++.++.... . ......+..|+..++.|+...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p-~~------r~g~~~~~~~-~-~l~lfGG~~~-~---~~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEP-SP------RYGHSLSAVG-D-KLYLFGGTDK-K---YRNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCCC-Cc------ccceeEEEEC-C-eEEEEccccC-C---CCChhheEeccCCCCcEEEec
Confidence 4999999998888776544322 11 1111111111 2 2222221111 0 111258899999999999887
Q ss_pred cCcccceeecCCCCccEEECceEEEEeecCCC--CccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeE
Q 041235 198 GLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS--YNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSL 275 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L 275 (362)
.....|... ..+..+..+-.+|.+++.+.. ....+.+||+.+.+|..+...... ......+.++..++++
T Consensus 156 ~~~~~P~~r--~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~------P~pR~gH~~~~~~~~~ 227 (482)
T KOG0379|consen 156 PTGDPPPPR--AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEA------PSPRYGHAMVVVGNKL 227 (482)
T ss_pred CcCCCCCCc--ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCC------CCCCCCceEEEECCeE
Confidence 621111111 345677778888888876521 356799999999999987543222 1112345778889999
Q ss_pred EEEEecC-CCCEE-EEEEEcC--CeeeEEEEec--CCCcceeeEEEeeCCeEEEEEe--------CCeEEEEECCCCeEE
Q 041235 276 SLLYSEE-SGHSF-SLWMMKG--GFWTKHLSFG--PFMEAYQPLGFWRNGEFFLESS--------DNRLVLYDSRYEEIR 341 (362)
Q Consensus 276 ~l~~~~~-~~~~~-~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~i~~~~~--------~~~l~~yd~~t~~~~ 341 (362)
+++.... .+..+ ++|.|+- ..|.++.... |......... ..+..++++.. ...++.||.+++.|.
T Consensus 228 ~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~ 306 (482)
T KOG0379|consen 228 LVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWS 306 (482)
T ss_pred EEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCccccccccccccccccccccee
Confidence 9998865 33333 8898876 6777444333 1112223333 33445554432 245889999999998
Q ss_pred EEEEec
Q 041235 342 DLEITG 347 (362)
Q Consensus 342 ~i~~~~ 347 (362)
.+...+
T Consensus 307 ~~~~~~ 312 (482)
T KOG0379|consen 307 KVESVG 312 (482)
T ss_pred eeeccc
Confidence 876433
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.5e-05 Score=68.85 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHccCCccccccccccccchhhhcCCHH
Q 041235 3 GYRELSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDPN 42 (362)
Q Consensus 3 ~~~~LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~ 42 (362)
+|..||||+++.||+.|+.|+|.++..|||+|+.+-++..
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 4889999999999999999999999999999999987654
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.54 E-value=0.0055 Score=58.91 Aligned_cols=154 Identities=10% Similarity=0.077 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCC--CCccEEEEEECCCceeeEec----CCCCCCC
Q 041235 182 PVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHN--SYNASILSFSMSDEVFEEIK----GPNFPQI 255 (362)
Q Consensus 182 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~~~~~~i~----~P~~~~~ 255 (362)
.+.+++..+..|.........+... .....+.++..+|.+++... .....+..||+.|.+|..+. .|+..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r--~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r-- 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPR--YGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR-- 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcc--cceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc--
Confidence 4788888889998766522222111 34677888999999988752 22347999999999998763 23333
Q ss_pred CCCCCCCCceeEEEEEcCeEEEEEecCCC--CEEEEEEEcC--CeeeEEEEecCCC-cceeeEEEeeCCeEEEEEe-C--
Q 041235 256 TTYDESEMTSWRIGIYDGSLSLLYSEESG--HSFSLWMMKG--GFWTKHLSFGPFM-EAYQPLGFWRNGEFFLESS-D-- 327 (362)
Q Consensus 256 ~~~~~~~~~~~~l~~~~g~L~l~~~~~~~--~~~~iW~l~~--~~W~~~~~i~~~~-~~~~~~~~~~~~~i~~~~~-~-- 327 (362)
..+.++..+.+|.+....... ..-++|+++- ..|.++...+... ....+..+..++.++++.. +
T Consensus 165 --------~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~ 236 (482)
T KOG0379|consen 165 --------AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDG 236 (482)
T ss_pred --------ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccC
Confidence 345677778888888876522 4668888876 7899999887432 2344444444556555433 2
Q ss_pred ----CeEEEEECCCCeEEEEEEec
Q 041235 328 ----NRLVLYDSRYEEIRDLEITG 347 (362)
Q Consensus 328 ----~~l~~yd~~t~~~~~i~~~~ 347 (362)
..+..+|+.+.+|+.+...+
T Consensus 237 ~~~l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 237 DVYLNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred CceecceEeeecccceeeeccccC
Confidence 44899999999998665444
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.67 E-value=0.2 Score=45.82 Aligned_cols=145 Identities=14% Similarity=0.173 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCceeccc-CcccceeecCCCCccE-EECceEEEEeecCCC-------CccEEEEEECCCceeeEecCCCC
Q 041235 182 PVAIYNFSTNSWRDLEG-LFQMGHYYGSDSTDNV-YLNGYCYWVASGHNS-------YNASILSFSMSDEVFEEIKGPNF 252 (362)
Q Consensus 182 ~~~vyss~~~~W~~~~~-~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~-------~~~~il~fD~~~~~~~~i~~P~~ 252 (362)
.+..|+-+.+.|+.+.. ..+.+. ....+| +-.|.+|.++++..+ .---+-.||+.+++|+.+.++..
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pR----sshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPR----SSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCC----ccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 56789999999999887 233332 223444 445877777766521 12248899999999999988764
Q ss_pred CCCCCCCCCCCceeEEEEEcCeEEEEEecCCCC-E----EEEEEEcC--CeeeEEEEec--CCCcceeeEEEeeCCeEEE
Q 041235 253 PQITTYDESEMTSWRIGIYDGSLSLLYSEESGH-S----FSLWMMKG--GFWTKHLSFG--PFMEAYQPLGFWRNGEFFL 323 (362)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~-~----~~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~i~~ 323 (362)
- ....-+.++..+.+|.++....+.. . =+||.++- ..|.++..-. |......-+.+..+|.|++
T Consensus 175 P-------S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~v 247 (521)
T KOG1230|consen 175 P-------SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVV 247 (521)
T ss_pred C-------CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEE
Confidence 3 2334567899999999988754221 1 15666554 8999987622 2111223344455677766
Q ss_pred EEe---------------CCeEEEEECCC
Q 041235 324 ESS---------------DNRLVLYDSRY 337 (362)
Q Consensus 324 ~~~---------------~~~l~~yd~~t 337 (362)
-.. ...++..++++
T Consensus 248 yGGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 248 YGGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred EcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 432 23477888887
No 33
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.34 E-value=0.33 Score=42.28 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=85.1
Q ss_pred CCCccEEECceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCC--CCCCCCCCceeEEEEEcCeEEEEEecCCC-
Q 041235 209 DSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQI--TTYDESEMTSWRIGIYDGSLSLLYSEESG- 284 (362)
Q Consensus 209 ~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~--~~~~~~~~~~~~l~~~~g~L~l~~~~~~~- 284 (362)
.....|..||.+|+-... ...|+.||+.++.-. ...+|...-. ..+.........+++-+..|.++......
T Consensus 70 ~GtG~vVYngslYY~~~~----s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYN----SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN 145 (250)
T ss_pred ccCCeEEECCcEEEEecC----CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC
Confidence 456788999999998874 348999999999987 7778766521 12223445667888888889998876543
Q ss_pred CEEEEEEEcC------CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-----CCeEEEEECCCCeEEEEEE
Q 041235 285 HSFSLWMMKG------GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-----DNRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 285 ~~~~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----~~~l~~yd~~t~~~~~i~~ 345 (362)
..+.|=+|+. ..|.... + .......+-+ .|.++.... ..--++||+.+++-+.+.+
T Consensus 146 g~ivvskld~~tL~v~~tw~T~~--~-k~~~~naFmv--CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNTSY--P-KRSAGNAFMV--CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred CcEEEEeeCcccCceEEEEEecc--C-chhhcceeeE--eeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 3688888887 4555322 1 1122222222 266766654 2346899999888776554
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.13 E-value=0.0018 Score=56.99 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=37.9
Q ss_pred CCCC----HHHHHHHHccCCccccccccccccchhhhcCCHHHHHH
Q 041235 5 RELS----HDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDPNFIYK 46 (362)
Q Consensus 5 ~~LP----~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~ 46 (362)
+.|| +++.+.||+.|...+|..+..|||+|+.+++++-.-+.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 4689 99999999999999999999999999999998875443
No 35
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.12 E-value=0.0018 Score=56.47 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHccC-----CccccccccccccchhhhcCCHHHHHHhhc
Q 041235 4 YRELSHDLLVETLSRL-----PVKSLMRFRCVSKSWFSLLKDPNFIYKHLN 49 (362)
Q Consensus 4 ~~~LP~dll~~IL~rL-----p~~~l~r~r~VcK~W~~li~~p~F~~~~~~ 49 (362)
+..||||+|.+||.++ ++.+|.++.+|||.|+...++|+|-+.-..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 3579999999999874 469999999999999999999998775543
No 36
>smart00284 OLF Olfactomedin-like domains.
Probab=95.71 E-value=0.87 Score=39.53 Aligned_cols=128 Identities=16% Similarity=0.259 Sum_probs=80.9
Q ss_pred CCCccEEECceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCC--CCCCCCCCCCceeEEEEEcCeEEEEEecC-CC
Q 041235 209 DSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFP--QITTYDESEMTSWRIGIYDGSLSLLYSEE-SG 284 (362)
Q Consensus 209 ~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~--~~~~~~~~~~~~~~l~~~~g~L~l~~~~~-~~ 284 (362)
.....|..||.+|+-... ...|+.||+.+++-.. -.+|... +.-.+...+.....|++-+..|.++-... ..
T Consensus 75 ~GtG~VVYngslYY~~~~----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 75 QGTGVVVYNGSLYFNKFN----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA 150 (255)
T ss_pred ccccEEEECceEEEEecC----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC
Confidence 446789999999996654 3479999999999863 3466431 10111123445678888888888887654 45
Q ss_pred CEEEEEEEcC------CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-----CCeEEEEECCCCeEEEEEE
Q 041235 285 HSFSLWMMKG------GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-----DNRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 285 ~~~~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----~~~l~~yd~~t~~~~~i~~ 345 (362)
..+.|-+|+. ..|...+. .......+-+ -|.++.... ..-.++||..|++-+.+.+
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~~~---k~sa~naFmv--CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITTYN---KRSASNAFMI--CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcCCC---cccccccEEE--eeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 7788899987 45554221 1112222222 266666542 3447899999887665543
No 37
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.71 E-value=0.47 Score=40.74 Aligned_cols=121 Identities=12% Similarity=0.200 Sum_probs=70.5
Q ss_pred EECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEE--cC--eEEEEEec---CCCCEE
Q 041235 215 YLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIY--DG--SLSLLYSE---ESGHSF 287 (362)
Q Consensus 215 ~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~--~g--~L~l~~~~---~~~~~~ 287 (362)
.|||.+ .+.... .+...|+.|+++..+|.|+.... +... ....++-. .+ |+.-+... .....+
T Consensus 3 sCnGLl-c~~~~~-----~~~V~NP~T~~~~~LP~~~~~~~--~~~~--~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~ 72 (230)
T TIGR01640 3 PCDGLI-CFSYGK-----RLVVWNPSTGQSRWLPTPKSRRS--NKES--DTYFLGYDPIEKQYKVLCFSDRSGNRNQSEH 72 (230)
T ss_pred ccceEE-EEecCC-----cEEEECCCCCCEEecCCCCCccc--cccc--ceEEEeecccCCcEEEEEEEeecCCCCCccE
Confidence 578988 444433 79999999999999986654200 0000 01112111 11 22222221 124578
Q ss_pred EEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-C-----CeEEEEECCCCeEEE-EEEe
Q 041235 288 SLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-D-----NRLVLYDSRYEEIRD-LEIT 346 (362)
Q Consensus 288 ~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~-----~~l~~yd~~t~~~~~-i~~~ 346 (362)
+|+.++..+|..+...++....... ++.-+|.+++... . ..++.||+++++++. ++..
T Consensus 73 ~Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 73 QVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EEEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 8999988999988743222111222 5555788876543 1 169999999999994 6643
No 38
>PF13964 Kelch_6: Kelch motif
Probab=95.63 E-value=0.037 Score=34.82 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=32.4
Q ss_pred CccEEECceEEEEeecCC--CCccEEEEEECCCceeeEe-cCC
Q 041235 211 TDNVYLNGYCYWVASGHN--SYNASILSFSMSDEVFEEI-KGP 250 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~~~~~~i-~~P 250 (362)
..+|.++|.||.+++... .....+..||+.+++|+.+ ++|
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 567899999999998763 2346899999999999988 344
No 39
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.22 E-value=1.8 Score=37.41 Aligned_cols=197 Identities=18% Similarity=0.151 Sum_probs=108.8
Q ss_pred ecccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCcc
Q 041235 105 GPCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLP 182 (362)
Q Consensus 105 ~s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 182 (362)
...+|-|.+.+ ...++.++|.+++......+. ..++.++...+.+ +++.. ..
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l-~v~~~-------------~~ 61 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRL-YVADS-------------GG 61 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEE-EEEET-------------TC
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEE-EEEEc-------------Cc
Confidence 33456666665 568999999999876644433 3556666323322 22221 35
Q ss_pred EEEEEcCCCCceecccCc-cc-ceeecCCCCccEEECceEEEEeecCC--CCc--cEEEEEECCCceeeEe----cCCCC
Q 041235 183 VAIYNFSTNSWRDLEGLF-QM-GHYYGSDSTDNVYLNGYCYWVASGHN--SYN--ASILSFSMSDEVFEEI----KGPNF 252 (362)
Q Consensus 183 ~~vyss~~~~W~~~~~~~-~~-~~~~~~~~~~~v~~~G~lywl~~~~~--~~~--~~il~fD~~~~~~~~i----~~P~~ 252 (362)
..+++..++.++.+.... .- +... .+--.+--+|.+|.-..... ... ..+..+|.. ++.+.+ ..|..
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~--~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG 138 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNR--PNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG 138 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEE--EEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCC--CceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc
Confidence 567788888887765521 11 1111 12234555788776654331 111 579999999 544433 33322
Q ss_pred CCCCCCCCCCCceeEEEEEcCe-EEEEEecCCCCEEEEEEEcC--CeeeEEEEe-cCCC--cceeeEEEeeCCeEEEEEe
Q 041235 253 PQITTYDESEMTSWRIGIYDGS-LSLLYSEESGHSFSLWMMKG--GFWTKHLSF-GPFM--EAYQPLGFWRNGEFFLESS 326 (362)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~g~-L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i-~~~~--~~~~~~~~~~~~~i~~~~~ 326 (362)
+ ...-+|+ |++... ....+..+.++. ..+.....+ .... ....-+++..+|.|++...
T Consensus 139 i--------------~~s~dg~~lyv~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 139 I--------------AFSPDGKTLYVADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp E--------------EEETTSSEEEEEET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred e--------------EECCcchheeeccc--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence 2 2334565 444433 345555555544 335544333 2222 2355677777888887754
Q ss_pred -CCeEEEEECCCCeEEEEEEe
Q 041235 327 -DNRLVLYDSRYEEIRDLEIT 346 (362)
Q Consensus 327 -~~~l~~yd~~t~~~~~i~~~ 346 (362)
..++..||++.+.++.|.+.
T Consensus 203 ~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 203 GGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp TTTEEEEEETTSCEEEEEE-S
T ss_pred CCCEEEEECCCccEEEEEcCC
Confidence 89999999997778888876
No 40
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.64 E-value=2.5 Score=36.09 Aligned_cols=194 Identities=13% Similarity=0.113 Sum_probs=93.9
Q ss_pred ccccEEEee-cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEE
Q 041235 107 CDGIFCFFE-NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAI 185 (362)
Q Consensus 107 ~~GLl~~~~-~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 185 (362)
.+|.+.... +..++.+|+.||+.+.--..+... .. . .... +=+|+... .. -.+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~------~-~~~~-----~~~v~v~~----~~-------~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI-SG------A-PVVD-----GGRVYVGT----SD-------GSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG-GS------G-EEEE-----TTEEEEEE----TT-------SEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc-cc------e-eeec-----cccccccc----ce-------eeeEe
Confidence 567776664 678999999999855433322110 00 0 0111 11222221 11 23455
Q ss_pred EEcCCC--Ccee-cccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCcee--eE-ecCCCCCCCCCCC
Q 041235 186 YNFSTN--SWRD-LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVF--EE-IKGPNFPQITTYD 259 (362)
Q Consensus 186 yss~~~--~W~~-~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~--~~-i~~P~~~~~~~~~ 259 (362)
++..++ .|+. ....+.... . ........++.+|.....+ .|.++|+.+++- +. +..|.... ...
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~g-----~l~~~d~~tG~~~w~~~~~~~~~~~--~~~ 160 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGV-R--SSSSPAVDGDRLYVGTSSG-----KLVALDPKTGKLLWKYPVGEPRGSS--PIS 160 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCST-B----SEEEEETTEEEEEETCS-----EEEEEETTTTEEEEEEESSTT-SS----EE
T ss_pred cccCCcceeeeecccccccccc-c--cccCceEecCEEEEEeccC-----cEEEEecCCCcEEEEeecCCCCCCc--cee
Confidence 554443 7873 333111111 1 1233444467777776666 899999887654 32 33333210 000
Q ss_pred CCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCC--eeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCC
Q 041235 260 ESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGG--FWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRY 337 (362)
Q Consensus 260 ~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~--~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t 337 (362)
........++..+|.+++... ....+.+ .++.. .|+.. +. . ........++.+++...+++++++|++|
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~--~g~~~~~-d~~tg~~~w~~~--~~---~-~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 161 SFSDINGSPVISDGRVYVSSG--DGRVVAV-DLATGEKLWSKP--IS---G-IYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EETTEEEEEECCTTEEEEECC--TSSEEEE-ETTTTEEEEEEC--SS-----ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred eecccccceEEECCEEEEEcC--CCeEEEE-ECCCCCEEEEec--CC---C-ccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 001112344444675555544 2334555 55443 36222 22 1 1111222345555555689999999999
Q ss_pred CeEEEE
Q 041235 338 EEIRDL 343 (362)
Q Consensus 338 ~~~~~i 343 (362)
++..+.
T Consensus 232 G~~~W~ 237 (238)
T PF13360_consen 232 GKVVWQ 237 (238)
T ss_dssp TEEEEE
T ss_pred CCEEeE
Confidence 998764
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.28 E-value=0.12 Score=31.87 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=31.1
Q ss_pred CccEEECceEEEEeecCC--CCccEEEEEECCCceeeEe
Q 041235 211 TDNVYLNGYCYWVASGHN--SYNASILSFSMSDEVFEEI 247 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~~~~~~i 247 (362)
..++.++|.+|.+++... .....+..||+.+++|+.+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 567899999999998653 3356899999999999887
No 42
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.08 E-value=4.7 Score=37.00 Aligned_cols=170 Identities=17% Similarity=0.216 Sum_probs=89.5
Q ss_pred eeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCC--ceecccCcccceeecCCCCccEEECce-EEEEee
Q 041235 149 NFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNS--WRDLEGLFQMGHYYGSDSTDNVYLNGY-CYWVAS 225 (362)
Q Consensus 149 ~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~--W~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~ 225 (362)
.+.+.++|..+ |-+|. ..+. -.+.+|+.+.+. ....... ..+...+ +..-...-+|. +|....
T Consensus 146 ~H~v~~~pdg~-~v~v~----dlG~-------D~v~~~~~~~~~~~l~~~~~~-~~~~G~G-PRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 146 PHQVVFSPDGR-FVYVP----DLGA-------DRVYVYDIDDDTGKLTPVDSI-KVPPGSG-PRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp EEEEEE-TTSS-EEEEE----ETTT-------TEEEEEEE-TTS-TEEEEEEE-ECSTTSS-EEEEEE-TTSSEEEEEET
T ss_pred ceeEEECCCCC-EEEEE----ecCC-------CEEEEEEEeCCCceEEEeecc-ccccCCC-CcEEEEcCCcCEEEEecC
Confidence 67788888644 32222 1122 477888887655 4332220 0110010 11111222665 555544
Q ss_pred cCCCCccEEEEEECC--CceeeEe----cCCCCCCCCCCCCCCCceeEEEEE-cCe-EEEEEecCCCCEEEEEEEcC--C
Q 041235 226 GHNSYNASILSFSMS--DEVFEEI----KGPNFPQITTYDESEMTSWRIGIY-DGS-LSLLYSEESGHSFSLWMMKG--G 295 (362)
Q Consensus 226 ~~~~~~~~il~fD~~--~~~~~~i----~~P~~~~~~~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~iW~l~~--~ 295 (362)
. ...|.+|+.. +..++.+ .+|... ........+... +|+ |++... ....+.++.+++ +
T Consensus 212 ~----s~~v~v~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 212 L----SNTVSVFDYDPSDGSLTEIQTISTLPEGF------TGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPATG 279 (345)
T ss_dssp T----TTEEEEEEEETTTTEEEEEEEEESCETTS------CSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTT
T ss_pred C----CCcEEEEeecccCCceeEEEEeeeccccc------cccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecCCC
Confidence 3 3366666666 6666554 355433 111123344443 566 444443 688999999965 5
Q ss_pred eeeEEEEecCCCcceeeEEEeeCCeEEEEEe--CCeEEEE--ECCCCeEEEEE
Q 041235 296 FWTKHLSFGPFMEAYQPLGFWRNGEFFLESS--DNRLVLY--DSRYEEIRDLE 344 (362)
Q Consensus 296 ~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~--~~~l~~y--d~~t~~~~~i~ 344 (362)
.-+.+..++......+.+.+..+|+.+++.. ++.+.+| |.+++.++.+.
T Consensus 280 ~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 280 TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 5555555543233467788888888776654 6677776 56788998775
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=93.56 E-value=0.26 Score=30.72 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=32.1
Q ss_pred CCccEEECceEEEEeec--C--CCCccEEEEEECCCceeeEecC
Q 041235 210 STDNVYLNGYCYWVASG--H--NSYNASILSFSMSDEVFEEIKG 249 (362)
Q Consensus 210 ~~~~v~~~G~lywl~~~--~--~~~~~~il~fD~~~~~~~~i~~ 249 (362)
...++.++|++|.+++. + ......+..||+++.+|+.++.
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 35678999999999987 2 2345679999999999998754
No 44
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.13 E-value=7.8 Score=36.49 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=69.0
Q ss_pred EEECceEEEEeecCCCCccEEEEEECCCce---eeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEE
Q 041235 214 VYLNGYCYWVASGHNSYNASILSFSMSDEV---FEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLW 290 (362)
Q Consensus 214 v~~~G~lywl~~~~~~~~~~il~fD~~~~~---~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW 290 (362)
-+.+|.+|.++..+ +....|++.|+.+-. |..+-.|..- ......+...++.|.+.........+.|+
T Consensus 284 ~~~~~~~yi~Tn~~-a~~~~l~~~~l~~~~~~~~~~~l~~~~~--------~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 284 DHHGDRLYILTNDD-APNGRLVAVDLADPSPAEWWTVLIPEDE--------DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp EEETTEEEEEE-TT--TT-EEEEEETTSTSGGGEEEEEE--SS--------SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred EccCCEEEEeeCCC-CCCcEEEEecccccccccceeEEcCCCC--------ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 35588899888754 456799999988765 6543333221 11334556678888888886555666666
Q ss_pred EEcCCeeeEEEEecCCCcceeeEEEe---eCCeEEEEEe----CCeEEEEECCCCeEEEEE
Q 041235 291 MMKGGFWTKHLSFGPFMEAYQPLGFW---RNGEFFLESS----DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 291 ~l~~~~W~~~~~i~~~~~~~~~~~~~---~~~~i~~~~~----~~~l~~yd~~t~~~~~i~ 344 (362)
.++. .|.......+.. ....++. ..+.+++.-. ...++.||+++++.+.+.
T Consensus 355 ~~~~-~~~~~~~~~p~~--g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 355 DLDD-GKESREIPLPEA--GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ETT--TEEEEEEESSSS--SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred ECCC-CcEEeeecCCcc--eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 6651 344333222221 2212222 2345655433 578999999999998775
No 45
>PF13964 Kelch_6: Kelch motif
Probab=92.17 E-value=0.19 Score=31.50 Aligned_cols=23 Identities=4% Similarity=0.166 Sum_probs=19.9
Q ss_pred cCcEEEEeccccceecccCCCCC
Q 041235 116 NENIYLWNVSMNEYRIVTKRKAR 138 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~ 138 (362)
...+.++||.|++|..+|+++.+
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCCC
Confidence 35799999999999999988753
No 46
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.45 E-value=15 Score=35.98 Aligned_cols=42 Identities=29% Similarity=0.447 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHccCCccccccccccccchhhhcCCHHHHH
Q 041235 4 YRELSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDPNFIY 45 (362)
Q Consensus 4 ~~~LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 45 (362)
...||.++...||..|+.+++.++++||+.|+.++.+...-.
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 457999999999999999999999999999999998655544
No 47
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.36 E-value=2.2 Score=38.53 Aligned_cols=113 Identities=21% Similarity=0.306 Sum_probs=72.3
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECc-eEEEEeecCC---------------C---------------
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNG-YCYWVASGHN---------------S--------------- 229 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~---------------~--------------- 229 (362)
..+..|++.+++|...++..+... ....++.++| .+|+++.-.. +
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl----~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~ 188 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGL----VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK 188 (381)
T ss_pred eeeEEecCCCChhheecccccccc----ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCC
Confidence 467889999999999988333221 2245566666 8888874320 0
Q ss_pred -----CccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecC--CCCEEEEEEEc--C--Cee
Q 041235 230 -----YNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEE--SGHSFSLWMMK--G--GFW 297 (362)
Q Consensus 230 -----~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~--~~~~~~iW~l~--~--~~W 297 (362)
....+++||+.+++|+.. ..|..- .. -...+..+++|.++..+- .-++-.+|+.+ + ..|
T Consensus 189 ~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~------~a---Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w 259 (381)
T COG3055 189 AEDYFFNKEVLSYDPSTNQWRNLGENPFYG------NA---GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKW 259 (381)
T ss_pred HHHhcccccccccccccchhhhcCcCcccC------cc---CcceeecCCeEEEEcceecCCccccceeEEEeccCceee
Confidence 235799999999999987 466554 11 123455567788888753 33444444433 2 789
Q ss_pred eEEEEecCC
Q 041235 298 TKHLSFGPF 306 (362)
Q Consensus 298 ~~~~~i~~~ 306 (362)
.+.-.+++.
T Consensus 260 ~~l~~lp~~ 268 (381)
T COG3055 260 LKLSDLPAP 268 (381)
T ss_pred eeccCCCCC
Confidence 998777653
No 48
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=91.24 E-value=18 Score=36.48 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=62.7
Q ss_pred cEEEEEECCCceee---EecCCCCCCCCCCCCCCCceeEEEEEcCe-EEEEEecCCCCEEEEEEEcC--------CeeeE
Q 041235 232 ASILSFSMSDEVFE---EIKGPNFPQITTYDESEMTSWRIGIYDGS-LSLLYSEESGHSFSLWMMKG--------GFWTK 299 (362)
Q Consensus 232 ~~il~fD~~~~~~~---~i~~P~~~~~~~~~~~~~~~~~l~~~~g~-L~l~~~~~~~~~~~iW~l~~--------~~W~~ 299 (362)
.+.-.||.....|. .|..|.+. ......+...-.+ -|+... .+..+.||++.+ ..|..
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~--------~~vat~~~~~~rs~~~vta~--~dg~~KiW~~~~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGN--------AFVATIFLNPTRSVRCVTAS--VDGDFKIWVFTDDSNIYKKSSNWTC 501 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCc--------eeEEEEEecCcccceeEEec--cCCeEEEEEEecccccCcCccceEE
Confidence 35667777788884 46788765 1111122222222 333333 578999999954 68998
Q ss_pred EEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCC-CeEE
Q 041235 300 HLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRY-EEIR 341 (362)
Q Consensus 300 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t-~~~~ 341 (362)
...=.....-....++.++|.++...-++.+-.||..+ ++.+
T Consensus 502 ~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 502 KAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELL 544 (792)
T ss_pred eeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhh
Confidence 76432212223344556789999998999999999999 4443
No 49
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.90 E-value=9.2 Score=32.52 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=64.0
Q ss_pred cEEECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEE
Q 041235 213 NVYLNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWM 291 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~ 291 (362)
++.-+|.+|....++ .+.++|..+++- -...++.... . .....++.+++... ...+..+.
T Consensus 32 ~~~~~~~v~~~~~~~-----~l~~~d~~tG~~~W~~~~~~~~~----------~-~~~~~~~~v~v~~~---~~~l~~~d 92 (238)
T PF13360_consen 32 AVPDGGRVYVASGDG-----NLYALDAKTGKVLWRFDLPGPIS----------G-APVVDGGRVYVGTS---DGSLYALD 92 (238)
T ss_dssp EEEETTEEEEEETTS-----EEEEEETTTSEEEEEEECSSCGG----------S-GEEEETTEEEEEET---TSEEEEEE
T ss_pred EEEeCCEEEEEcCCC-----EEEEEECCCCCEEEEeecccccc----------c-eeeecccccccccc---eeeeEecc
Confidence 455888998886665 999999866543 2344454431 1 13667788876663 33333333
Q ss_pred EcC--CeeeE-EEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEEE
Q 041235 292 MKG--GFWTK-HLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 292 l~~--~~W~~-~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~i 343 (362)
.++ ..|.. ...-+.............++.+++...+..++.+|+++++..+-
T Consensus 93 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp TTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred cCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 333 67874 33222222111111222244555555689999999999987543
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.62 E-value=0.11 Score=47.56 Aligned_cols=36 Identities=33% Similarity=0.415 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHccCCccccccccccccchhhhcCCH
Q 041235 6 ELSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDP 41 (362)
Q Consensus 6 ~LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p 41 (362)
.||++++..||+-|+.++++|++.+|+.|+.+..|-
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 699999999999999999999999999999987753
No 51
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=89.24 E-value=12 Score=32.26 Aligned_cols=128 Identities=16% Similarity=0.283 Sum_probs=74.7
Q ss_pred CCCccEEECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCC--CCCCCCCceeEEEEEcCeEEEEEecC-CC
Q 041235 209 DSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQIT--TYDESEMTSWRIGIYDGSLSLLYSEE-SG 284 (362)
Q Consensus 209 ~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~--~~~~~~~~~~~l~~~~g~L~l~~~~~-~~ 284 (362)
....-|..||++|+..... ..|+.||+.++.- ....+|...-.+ .+...+.....+++.+..|.++.... ..
T Consensus 69 ~gTg~VVynGs~yynk~~t----~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~ 144 (249)
T KOG3545|consen 69 DGTGHVVYNGSLYYNKAGT----RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENA 144 (249)
T ss_pred cccceEEEcceEEeeccCC----cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccC
Confidence 3467899999999988653 4899999998533 333444332111 11123345566777776677776554 45
Q ss_pred CEEEEEEEcC------CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe----CCeE-EEEECCCCeEEEEEE
Q 041235 285 HSFSLWMMKG------GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS----DNRL-VLYDSRYEEIRDLEI 345 (362)
Q Consensus 285 ~~~~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~----~~~l-~~yd~~t~~~~~i~~ 345 (362)
..+.|-.|+. ..|.....- .....-+-+ -|.++.+.. ...+ ++||..+++-+.+.+
T Consensus 145 g~iv~skLdp~tl~~e~tW~T~~~k---~~~~~aF~i--CGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 145 GTIVLSKLDPETLEVERTWNTTLPK---RSAGNAFMI--CGVLYVVHSYNCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred CcEEeeccCHHHhheeeeeccccCC---CCcCceEEE--eeeeEEEeccccCCceEEEEEEcCCCceecccc
Confidence 5666677776 455433221 111222222 256666553 2333 699999988877654
No 52
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=88.84 E-value=1.5 Score=26.70 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=23.3
Q ss_pred EeeCCeEEEEEe-------CCeEEEEECCCCeEEEEE
Q 041235 315 FWRNGEFFLESS-------DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 315 ~~~~~~i~~~~~-------~~~l~~yd~~t~~~~~i~ 344 (362)
+.-+++||++.. ...+..||+++++|+.+.
T Consensus 8 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 8 VVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred EEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 345788888764 245999999999999875
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.56 E-value=15 Score=34.37 Aligned_cols=106 Identities=14% Similarity=0.207 Sum_probs=61.9
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCCc--eeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSDE--VFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFS 288 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 288 (362)
..++..+|.+|..+.++ .+.++|..++ .|+. +.+.. ..++..+|.|++... ...+.
T Consensus 250 ~sP~v~~~~vy~~~~~g-----~l~ald~~tG~~~W~~-~~~~~-------------~~~~~~~~~vy~~~~---~g~l~ 307 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG-----NLVALDLRSGQIVWKR-EYGSV-------------NDFAVDGGRIYLVDQ---NDRVY 307 (394)
T ss_pred CCcEEECCEEEEEEcCC-----eEEEEECCCCCEEEee-cCCCc-------------cCcEEECCEEEEEcC---CCeEE
Confidence 45778899999988776 8999998865 4543 22111 123445566665543 22333
Q ss_pred EEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEE
Q 041235 289 LWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 289 iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~ 342 (362)
....++ ..|.... .. ......|+. .++.+++...++.++++|.++++..+
T Consensus 308 ald~~tG~~~W~~~~-~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 308 ALDTRGGVELWSQSD-LL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EEECCCCcEEEcccc-cC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 333333 3454321 10 011233433 36778887778899999999998754
No 54
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.08 E-value=20 Score=34.30 Aligned_cols=203 Identities=15% Similarity=0.220 Sum_probs=96.3
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEE--EecCCcccccCCccEEEEEcCCCC--
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILT--LYDGKRLSVHDLLPVAIYNFSTNS-- 192 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--~~~~~~~~~~~~~~~~vyss~~~~-- 192 (362)
..+.|+|-+|+||.. |.-....+.+ ...+||.+|.. +++.+.. +|.. ..-+.|.+....
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpg----cAA~GfvcdGt----rilvFGGMvEYGk--------YsNdLYELQasRWe 119 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPG----CAAFGFVCDGT----RILVFGGMVEYGK--------YSNDLYELQASRWE 119 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCc----hhhcceEecCc----eEEEEccEeeecc--------ccchHHHhhhhhhh
Confidence 478999999999984 3222212222 22566666653 4444432 2322 233567776654
Q ss_pred ceeccc-Ccccce-eecCCCCccEEECceEEEEeecCC---C---------CccEEEEEECCCc--eeeEe----cCCCC
Q 041235 193 WRDLEG-LFQMGH-YYGSDSTDNVYLNGYCYWVASGHN---S---------YNASILSFSMSDE--VFEEI----KGPNF 252 (362)
Q Consensus 193 W~~~~~-~~~~~~-~~~~~~~~~v~~~G~lywl~~~~~---~---------~~~~il~fD~~~~--~~~~i----~~P~~ 252 (362)
|+.+.. ++.-.. .+....+.-+..+.+.|.+++-.+ + ...+++-+-...+ .|... .+|..
T Consensus 120 Wkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~p 199 (830)
T KOG4152|consen 120 WKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199 (830)
T ss_pred HhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCC
Confidence 555543 111110 111123445666778888875331 0 1234444433333 34321 34544
Q ss_pred CCCCCCCCCCCceeEEEEEcC-e--EEEEEecCCCCEEEEEEEcC--CeeeEEEEec--CC-CcceeeEEEeeCCeEEEE
Q 041235 253 PQITTYDESEMTSWRIGIYDG-S--LSLLYSEESGHSFSLWMMKG--GFWTKHLSFG--PF-MEAYQPLGFWRNGEFFLE 324 (362)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~g-~--L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~--~~-~~~~~~~~~~~~~~i~~~ 324 (362)
. +.+.. ..-.+.+. + +.+...-...+-=++|.|+- ..|.+...-+ |. ...-....+ .+++|+.
T Consensus 200 R------ESHTA-ViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I--GnKMyvf 270 (830)
T KOG4152|consen 200 R------ESHTA-VIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI--GNKMYVF 270 (830)
T ss_pred c------cccee-EEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceee--cceeEEe
Confidence 4 11111 11123332 2 33333222333348999986 7898864222 21 111111111 2333332
Q ss_pred Ee--------------------CCeEEEEECCCCeEEEEEE
Q 041235 325 SS--------------------DNRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 325 ~~--------------------~~~l~~yd~~t~~~~~i~~ 345 (362)
.. ...+.++|+.|.+|+.+..
T Consensus 271 GGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 271 GGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLM 311 (830)
T ss_pred cceeeeeccccccccccceeeeccceeeeeecchheeeeee
Confidence 11 2448899999999998764
No 55
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=87.96 E-value=6.5 Score=35.66 Aligned_cols=122 Identities=12% Similarity=0.138 Sum_probs=69.6
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEe---cCCCCC-CCCCCCCCCCceeEEEEEcCeEEEEEecC-----CCCEE
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEI---KGPNFP-QITTYDESEMTSWRIGIYDGSLSLLYSEE-----SGHSF 287 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~-~~~~~~~~~~~~~~l~~~~g~L~l~~~~~-----~~~~~ 287 (362)
+|.+||.+..+ .|...|++.+.-... .+-... .-+.|...+.....+-.-.|+|++..... +...-
T Consensus 195 ~~~~~F~Sy~G-----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 195 GGRLYFVSYEG-----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp TTEEEEEBTTS-----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred CCeEEEEecCC-----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 46899999888 899999888764332 221111 01234344433222222356788765322 56678
Q ss_pred EEEEEcCCeeeEEEEecCCCcceeeEEEeeCCe-EEE-EEe-CCeEEEEECCCCeEE-EEE
Q 041235 288 SLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGE-FFL-ESS-DNRLVLYDSRYEEIR-DLE 344 (362)
Q Consensus 288 ~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~-~~~-~~~l~~yd~~t~~~~-~i~ 344 (362)
+||+++-..=.++.+++... ....+.+..+++ +++ ... +..+.+||..|++.. .+.
T Consensus 270 eVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 99999885445677776421 123566766655 444 333 678999999998653 454
No 56
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=86.48 E-value=1.2 Score=27.59 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=22.7
Q ss_pred CccEEE-CceEEEEeecCCC--CccEEEEEECCCceeeEe
Q 041235 211 TDNVYL-NGYCYWVASGHNS--YNASILSFSMSDEVFEEI 247 (362)
Q Consensus 211 ~~~v~~-~G~lywl~~~~~~--~~~~il~fD~~~~~~~~i 247 (362)
..++.+ +|.+|.+++.... .-..+..||+.+++|+.+
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 445666 5888888765521 234689999999999988
No 57
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=86.02 E-value=8.3 Score=29.73 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=51.0
Q ss_pred EEEEEECCCc--eeeEecCCCCCCCCCC----CCCCCceeEEEEEcCeEEEEEecC--------CCCEEEEEEEcC----
Q 041235 233 SILSFSMSDE--VFEEIKGPNFPQITTY----DESEMTSWRIGIYDGSLSLLYSEE--------SGHSFSLWMMKG---- 294 (362)
Q Consensus 233 ~il~fD~~~~--~~~~i~~P~~~~~~~~----~~~~~~~~~l~~~~g~L~l~~~~~--------~~~~~~iW~l~~---- 294 (362)
.|+..|+-.+ .++-+++|........ ...-...+.++..+|+|-.+.... ...++.+|.|+.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5788887765 5567888877632111 111234567888999999888754 255799999987
Q ss_pred -CeeeEEEEecC
Q 041235 295 -GFWTKHLSFGP 305 (362)
Q Consensus 295 -~~W~~~~~i~~ 305 (362)
..|++.+.+..
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 68999998874
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=85.91 E-value=17 Score=33.62 Aligned_cols=109 Identities=10% Similarity=0.059 Sum_probs=58.4
Q ss_pred ccEEECceEEEEeecCCCCccEEEEEECCCc--eeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEE
Q 041235 212 DNVYLNGYCYWVASGHNSYNASILSFSMSDE--VFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSL 289 (362)
Q Consensus 212 ~~v~~~G~lywl~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~i 289 (362)
.++..+|.+|.-+.++ .+.+||..++ .|+ ..++... .......++.+.+.. ....+..
T Consensus 100 ~p~v~~~~v~v~~~~g-----~l~ald~~tG~~~W~-~~~~~~~-----------~~~p~v~~~~v~v~~---~~g~l~a 159 (377)
T TIGR03300 100 GVGADGGLVFVGTEKG-----EVIALDAEDGKELWR-AKLSSEV-----------LSPPLVANGLVVVRT---NDGRLTA 159 (377)
T ss_pred ceEEcCCEEEEEcCCC-----EEEEEECCCCcEeee-eccCcee-----------ecCCEEECCEEEEEC---CCCeEEE
Confidence 4566688888766665 8999998654 454 2333221 111223445544432 2344555
Q ss_pred EEEcC--CeeeEEEEecCCC--cceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEE
Q 041235 290 WMMKG--GFWTKHLSFGPFM--EAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 290 W~l~~--~~W~~~~~i~~~~--~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~ 342 (362)
+..+. ..|+.....+... ....|.. .++.+++...+++++.+|+++++..+
T Consensus 160 ~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 160 LDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred EEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 55544 4565443221110 1123332 24555555567899999999987544
No 59
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.59 E-value=29 Score=31.80 Aligned_cols=115 Identities=16% Similarity=0.227 Sum_probs=71.6
Q ss_pred CceEEEEeecCCCCccEEEEEECCCce--ee---EecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEE
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEV--FE---EIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWM 291 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~--~~---~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~ 291 (362)
+|...|....+ ...|..|++..+. .. .+.+|... + ...-...-+|+.+.+... ....+.++.
T Consensus 154 dg~~v~v~dlG---~D~v~~~~~~~~~~~l~~~~~~~~~~G~--------G-PRh~~f~pdg~~~Yv~~e-~s~~v~v~~ 220 (345)
T PF10282_consen 154 DGRFVYVPDLG---ADRVYVYDIDDDTGKLTPVDSIKVPPGS--------G-PRHLAFSPDGKYAYVVNE-LSNTVSVFD 220 (345)
T ss_dssp TSSEEEEEETT---TTEEEEEEE-TTS-TEEEEEEEECSTTS--------S-EEEEEE-TTSSEEEEEET-TTTEEEEEE
T ss_pred CCCEEEEEecC---CCEEEEEEEeCCCceEEEeeccccccCC--------C-CcEEEEcCCcCEEEEecC-CCCcEEEEe
Confidence 57766666655 4578888887665 53 34666654 1 222334446665544433 688999999
Q ss_pred EcC--CeeeEEEEecCCC------cceeeEEEeeCCeEEEEE-e-CCeEEEEEC--CCCeEEEEE
Q 041235 292 MKG--GFWTKHLSFGPFM------EAYQPLGFWRNGEFFLES-S-DNRLVLYDS--RYEEIRDLE 344 (362)
Q Consensus 292 l~~--~~W~~~~~i~~~~------~~~~~~~~~~~~~i~~~~-~-~~~l~~yd~--~t~~~~~i~ 344 (362)
++. ..++.+..+.... ....-+.+..+|+.+++. . .+.+.+|++ ++++++.+.
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 993 7777777776431 134556777788865554 3 677888887 567887765
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.89 E-value=22 Score=33.00 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=67.2
Q ss_pred CCceecccCcccceeecCCCCccEEECce-EEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEE
Q 041235 191 NSWRDLEGLFQMGHYYGSDSTDNVYLNGY-CYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRI 268 (362)
Q Consensus 191 ~~W~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l 268 (362)
+.|+-+..+.-.. -++.-||+ ++-.+.+. .|.-|+.++..-+ .+..-..+ ...-
T Consensus 347 ~~W~gvr~~~v~d--------lait~Dgk~vl~v~~d~-----~i~l~~~e~~~dr~lise~~~i-----------ts~~ 402 (519)
T KOG0293|consen 347 GNWEGVRDPKVHD--------LAITYDGKYVLLVTVDK-----KIRLYNREARVDRGLISEEQPI-----------TSFS 402 (519)
T ss_pred hcccccccceeEE--------EEEcCCCcEEEEEeccc-----ceeeechhhhhhhccccccCce-----------eEEE
Confidence 5898877632111 12333554 44444433 5666776654443 22222111 1122
Q ss_pred EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEec-CCC-cceeeEEEeeC-CeEEEEEe-CCeEEEEECCCCeEE
Q 041235 269 GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFG-PFM-EAYQPLGFWRN-GEFFLESS-DNRLVLYDSRYEEIR 341 (362)
Q Consensus 269 ~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~-~~~-~~~~~~~~~~~-~~i~~~~~-~~~l~~yd~~t~~~~ 341 (362)
..-+|+++++.. ...++.+|.++| |..+.+.. ... .+.-.-|+++. ++++..+. +.+++.+|.++++.-
T Consensus 403 iS~d~k~~LvnL--~~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 403 ISKDGKLALVNL--QDQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred EcCCCcEEEEEc--ccCeeEEeecch--hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence 445799999998 588999999975 33332221 111 12222344444 35666554 788999999988764
No 61
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=84.69 E-value=3.5 Score=25.41 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=17.5
Q ss_pred eeCCeEEEEEe-------CCeEEEEECCCCeEEEE
Q 041235 316 WRNGEFFLESS-------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 316 ~~~~~i~~~~~-------~~~l~~yd~~t~~~~~i 343 (362)
..++.+++... -..+..||+++++|+++
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 34567766542 34689999999999987
No 62
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=84.47 E-value=26 Score=32.44 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=64.7
Q ss_pred cEEECceEEEEeecCCCCccEEEEEECCCce--eeEecCC--CCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEE
Q 041235 213 NVYLNGYCYWVASGHNSYNASILSFSMSDEV--FEEIKGP--NFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFS 288 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fD~~~~~--~~~i~~P--~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 288 (362)
++.-+|.+|....++ .|.+||..+.. |+.-..+ ... ...+...+|+|++-... . .
T Consensus 64 ~~~~dg~v~~~~~~G-----~i~A~d~~~g~~~W~~~~~~~~~~~-----------~~~~~~~~G~i~~g~~~--g---~ 122 (370)
T COG1520 64 PADGDGTVYVGTRDG-----NIFALNPDTGLVKWSYPLLGAVAQL-----------SGPILGSDGKIYVGSWD--G---K 122 (370)
T ss_pred cEeeCCeEEEecCCC-----cEEEEeCCCCcEEecccCcCcceec-----------cCceEEeCCeEEEeccc--c---e
Confidence 599999999997776 89999999876 7544332 111 11223337775554432 2 6
Q ss_pred EEEEcC----CeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEEE
Q 041235 289 LWMMKG----GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 289 iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~i 343 (362)
++.+++ ..|.....- . .....+ .+..++.+++...++.++..|.+|++.++-
T Consensus 123 ~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 123 LYALDASTGTLVWSRNVGG-S-PYYASP-PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred EEEEECCCCcEEEEEecCC-C-eEEecC-cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 777766 345544332 0 011111 222355555555689999999999887654
No 63
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.28 E-value=25 Score=32.52 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=58.3
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCCce--eeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSDEV--FEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFS 288 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 288 (362)
..++..+|.+|..+..+ .+.+||..+++ |+ ..++.... ...+..++.+++... ...+.
T Consensus 59 ~~p~v~~~~v~v~~~~g-----~v~a~d~~tG~~~W~-~~~~~~~~-----------~~p~v~~~~v~v~~~---~g~l~ 118 (377)
T TIGR03300 59 LQPAVAGGKVYAADADG-----TVVALDAETGKRLWR-VDLDERLS-----------GGVGADGGLVFVGTE---KGEVI 118 (377)
T ss_pred cceEEECCEEEEECCCC-----eEEEEEccCCcEeee-ecCCCCcc-----------cceEEcCCEEEEEcC---CCEEE
Confidence 45678899999888776 89999976543 43 34443330 112333454443332 23333
Q ss_pred EEEEcC--CeeeEEEEecCCCcc-eeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEE
Q 041235 289 LWMMKG--GFWTKHLSFGPFMEA-YQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 289 iW~l~~--~~W~~~~~i~~~~~~-~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~ 342 (362)
.+..+. ..|.... + ... ..|+ + .++.+++...++.++.+|+++++..+
T Consensus 119 ald~~tG~~~W~~~~--~--~~~~~~p~-v-~~~~v~v~~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 119 ALDAEDGKELWRAKL--S--SEVLSPPL-V-ANGLVVVRTNDGRLTALDAATGERLW 169 (377)
T ss_pred EEECCCCcEeeeecc--C--ceeecCCE-E-ECCEEEEECCCCeEEEEEcCCCceee
Confidence 333322 4565321 1 111 1222 2 35566665568889999999887543
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=83.84 E-value=35 Score=31.32 Aligned_cols=127 Identities=11% Similarity=0.064 Sum_probs=67.1
Q ss_pred EEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEE--E-
Q 041235 111 FCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIY--N- 187 (362)
Q Consensus 111 l~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy--s- 187 (362)
|+........|+++.|+....+|.+...... .+.+.. .+ +++.+.................|++ +
T Consensus 80 v~~d~~~~t~vyDt~t~av~~~P~l~~pk~~-------pisv~V---G~--~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 80 VAVDQSGRTLVYDTDTRAVATGPRLHSPKRC-------PISVSV---GD--KLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred EEEcCCCCeEEEECCCCeEeccCCCCCCCcc-------eEEEEe---CC--eEEEeeccCccccccCccceeEEEecccc
Confidence 3333456789999999999999986643221 122221 22 2444422111110000000133444 3
Q ss_pred -------cCCCCceecccCcccceeecC----CCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEe---cCCCCC
Q 041235 188 -------FSTNSWRDLEGLFQMGHYYGS----DSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEI---KGPNFP 253 (362)
Q Consensus 188 -------s~~~~W~~~~~~~~~~~~~~~----~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~ 253 (362)
.++.+|+.++.|+ +...... ....+|+ +|.--|+...+. ...-.+||..+.+|+.. .||..-
T Consensus 148 ~~~~~~~~~~w~W~~LP~PP-f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~--~~GTysfDt~~~~W~~~GdW~LPF~G 223 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPP-FVRDRRYSDYRITSYAVV-DGRTIFVSVNGR--RWGTYSFDTESHEWRKHGDWMLPFHG 223 (342)
T ss_pred ccccccCCCcceEEcCCCCC-ccccCCcccceEEEEEEe-cCCeEEEEecCC--ceEEEEEEcCCcceeeccceecCcCC
Confidence 2234777766632 2221110 2345677 898888866531 13589999999999875 677653
No 65
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.16 E-value=37 Score=31.01 Aligned_cols=135 Identities=15% Similarity=0.185 Sum_probs=75.0
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecC-----CCCccEEEEEECCCceeeEe-cCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGH-----NSYNASILSFSMSDEVFEEI-KGPNFPQ 254 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-----~~~~~~il~fD~~~~~~~~i-~~P~~~~ 254 (362)
..+-+|+..++.|+.....+-.+ .+..++...|..-++.... .+......-|.-...+|... ++|....
T Consensus 196 ~ev~sy~p~~n~W~~~G~~pf~~-----~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~ 270 (381)
T COG3055 196 KEVLSYDPSTNQWRNLGENPFYG-----NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIG 270 (381)
T ss_pred ccccccccccchhhhcCcCcccC-----ccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCC
Confidence 46778999999999987632222 1233445455444443322 12233556666678899876 6666652
Q ss_pred CCCCCCC-CCceeEEEEEcCeEEEEEecC--------------------CCCEEEEEEEcCCeeeEEEEecCCCcceeeE
Q 041235 255 ITTYDES-EMTSWRIGIYDGSLSLLYSEE--------------------SGHSFSLWMMKGGFWTKHLSFGPFMEAYQPL 313 (362)
Q Consensus 255 ~~~~~~~-~~~~~~l~~~~g~L~l~~~~~--------------------~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~ 313 (362)
++. ...-..-...+|.+.+...-. ..-.=+||.+++..|..+..++. ....-+
T Consensus 271 ----~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~--~l~YG~ 344 (381)
T COG3055 271 ----SNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ--GLAYGV 344 (381)
T ss_pred ----CCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC--CccceE
Confidence 111 111111233445554443211 22345899998999999999874 233334
Q ss_pred EEeeCCeEEEEEe
Q 041235 314 GFWRNGEFFLESS 326 (362)
Q Consensus 314 ~~~~~~~i~~~~~ 326 (362)
.+.-++.++++..
T Consensus 345 s~~~nn~vl~IGG 357 (381)
T COG3055 345 SLSYNNKVLLIGG 357 (381)
T ss_pred EEecCCcEEEEcc
Confidence 4445677777654
No 66
>smart00612 Kelch Kelch domain.
Probab=83.07 E-value=4.1 Score=24.37 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=16.6
Q ss_pred ccEEEEEECCCceeeEe-cCCCC
Q 041235 231 NASILSFSMSDEVFEEI-KGPNF 252 (362)
Q Consensus 231 ~~~il~fD~~~~~~~~i-~~P~~ 252 (362)
...+..||+.+++|+.+ ++|..
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCc
Confidence 34788999999999876 34443
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.53 E-value=44 Score=31.55 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=74.4
Q ss_pred ccEEEEEcCCCCcee-cccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCcee-eEe---cCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRD-LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVF-EEI---KGPNFPQI 255 (362)
Q Consensus 181 ~~~~vyss~~~~W~~-~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i---~~P~~~~~ 255 (362)
.++.+|++.+.+=+. ... +.-. .....+..||.+...+... ..|-.||+.+... +.+ +.|...
T Consensus 48 ~rvqly~~~~~~~~k~~sr---Fk~~---v~s~~fR~DG~LlaaGD~s----G~V~vfD~k~r~iLR~~~ah~apv~~-- 115 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSR---FKDV---VYSVDFRSDGRLLAAGDES----GHVKVFDMKSRVILRQLYAHQAPVHV-- 115 (487)
T ss_pred cEEEEEecchhhhhhhHHh---hccc---eeEEEeecCCeEEEccCCc----CcEEEeccccHHHHHHHhhccCceeE--
Confidence 689999998753322 111 0000 0122344569998776653 3789999666322 222 223221
Q ss_pred CCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEe-eCCeEEEEEe-CCeEEEE
Q 041235 256 TTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFW-RNGEFFLESS-DNRLVLY 333 (362)
Q Consensus 256 ~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~i~~~~~-~~~l~~y 333 (362)
.+....++.+.+.+. ++..+.+|.+.... . ...+.-.....+-..+. .++.+++.+. ++.+=.|
T Consensus 116 ----------~~f~~~d~t~l~s~s--Dd~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 116 ----------TKFSPQDNTMLVSGS--DDKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred ----------EEecccCCeEEEecC--CCceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 222334555555444 58899999998833 2 33444333333333333 3455777665 7889999
Q ss_pred ECCCCe
Q 041235 334 DSRYEE 339 (362)
Q Consensus 334 d~~t~~ 339 (362)
|.++.+
T Consensus 182 DtR~~~ 187 (487)
T KOG0310|consen 182 DTRSLT 187 (487)
T ss_pred EeccCC
Confidence 999886
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.29 E-value=18 Score=33.81 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=60.1
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCC--ceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSD--EVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFS 288 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~--~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 288 (362)
..++..+|.+|....++ .+.+||..+ ..|+ .+++... ....+..+|.+.+... ...+.
T Consensus 114 ~~~~v~~~~v~v~~~~g-----~l~ald~~tG~~~W~-~~~~~~~-----------~ssP~v~~~~v~v~~~---~g~l~ 173 (394)
T PRK11138 114 GGVTVAGGKVYIGSEKG-----QVYALNAEDGEVAWQ-TKVAGEA-----------LSRPVVSDGLVLVHTS---NGMLQ 173 (394)
T ss_pred cccEEECCEEEEEcCCC-----EEEEEECCCCCCccc-ccCCCce-----------ecCCEEECCEEEEECC---CCEEE
Confidence 34678899999876665 899999865 4554 3333322 0111333555444322 22232
Q ss_pred EEEEcC--CeeeEEEEecCC--CcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEE
Q 041235 289 LWMMKG--GFWTKHLSFGPF--MEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 289 iW~l~~--~~W~~~~~i~~~--~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~ 342 (362)
-...++ ..|......+.. .....|.. .++.+++...++.++++|.++++..+
T Consensus 174 ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W 229 (394)
T PRK11138 174 ALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIW 229 (394)
T ss_pred EEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhh
Confidence 223323 456654332211 11234443 24667776678899999999987543
No 69
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.31 E-value=28 Score=30.66 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=71.3
Q ss_pred eeecccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCC
Q 041235 103 PLGPCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDL 180 (362)
Q Consensus 103 ~~~s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 180 (362)
+...-+|=|-... .+-+...||.++.-..+|++....... -.+..|+.. -+.+. ....
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gs-------Rriwsdpig----~~wit--twg~------- 253 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGS-------RRIWSDPIG----RAWIT--TWGT------- 253 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccc-------cccccCccC----cEEEe--ccCC-------
Confidence 3444445554442 456788999999877777766422211 123334432 23332 1122
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECce-EEEEeecCCCCccEEEEEECCCceeeEecCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGY-CYWVASGHNSYNASILSFSMSDEVFEEIKGPNFP 253 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~ 253 (362)
-.+.-|+..+.+|.+-.-+..- ......++|.. .-|+..-+ ...|..||.++++|++++.|...
T Consensus 254 g~l~rfdPs~~sW~eypLPgs~------arpys~rVD~~grVW~sea~---agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGSK------ARPYSMRVDRHGRVWLSEAD---AGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred ceeeEeCcccccceeeeCCCCC------CCcceeeeccCCcEEeeccc---cCceeecCcccceEEEecCCCCC
Confidence 4677888888889876543211 12233444322 33665443 45899999999999999998765
No 70
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.17 E-value=6.3 Score=21.70 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=20.5
Q ss_pred eCCeEEEEEeCCeEEEEECCCCeEEE
Q 041235 317 RNGEFFLESSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 317 ~~~~i~~~~~~~~l~~yd~~t~~~~~ 342 (362)
.++.+++...++.++++|.++++..+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 35566776678999999999988765
No 71
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=80.07 E-value=6.7 Score=24.17 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=23.3
Q ss_pred ceEEEEeecC---CCCccEEEEEECCCceeeEe-cCCCCC
Q 041235 218 GYCYWVASGH---NSYNASILSFSMSDEVFEEI-KGPNFP 253 (362)
Q Consensus 218 G~lywl~~~~---~~~~~~il~fD~~~~~~~~i-~~P~~~ 253 (362)
+.+|..++.. ......+.+||+.+.+|+.+ +.|...
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCc
Confidence 4555555443 12234689999999999988 444443
No 72
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=79.15 E-value=4.6 Score=24.94 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=28.8
Q ss_pred eEEEEEcCeEEEEEec----CCCCEEEEEEEcC--CeeeEEEEe
Q 041235 266 WRIGIYDGSLSLLYSE----ESGHSFSLWMMKG--GFWTKHLSF 303 (362)
Q Consensus 266 ~~l~~~~g~L~l~~~~----~~~~~~~iW~l~~--~~W~~~~~i 303 (362)
...++.+++|+++... .....-++|+++. ..|+++..+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 3567889999999987 2555668888876 899887543
No 73
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=77.89 E-value=5.2 Score=29.53 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=29.7
Q ss_pred CcEEEEecccc-ceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEE
Q 041235 117 ENIYLWNVSMN-EYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLIL 167 (362)
Q Consensus 117 ~~~~v~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 167 (362)
-+++++||.|| .|...-+ . . ..+.+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~WvPs~~--~---~------~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWIPASK--H---A------VTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeEeCCC--C---c------eeEEEEecCCCcEEEEEEec
Confidence 46899999996 7874332 1 1 16778889999999999864
No 74
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=76.31 E-value=49 Score=28.40 Aligned_cols=110 Identities=16% Similarity=0.091 Sum_probs=67.7
Q ss_pred cEEE--CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEE
Q 041235 213 NVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSL 289 (362)
Q Consensus 213 ~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~i 289 (362)
+++. +|.+||..... ..|..+|..+++.+.+.+|... ...+. -+|+|.+... ..+.+
T Consensus 5 p~~d~~~g~l~~~D~~~----~~i~~~~~~~~~~~~~~~~~~~------------G~~~~~~~g~l~v~~~----~~~~~ 64 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG----GRIYRVDPDTGEVEVIDLPGPN------------GMAFDRPDGRLYVADS----GGIAV 64 (246)
T ss_dssp EEEETTTTEEEEEETTT----TEEEEEETTTTEEEEEESSSEE------------EEEEECTTSEEEEEET----TCEEE
T ss_pred eEEECCCCEEEEEEcCC----CEEEEEECCCCeEEEEecCCCc------------eEEEEccCCEEEEEEc----CceEE
Confidence 4555 69999997654 3899999999999888877532 11222 3566655543 23344
Q ss_pred EEEcCCeeeEEEEecCCC-cc--eeeEEEeeCCeEEEEEeC---------CeEEEEECCCCeEEEE
Q 041235 290 WMMKGGFWTKHLSFGPFM-EA--YQPLGFWRNGEFFLESSD---------NRLVLYDSRYEEIRDL 343 (362)
Q Consensus 290 W~l~~~~W~~~~~i~~~~-~~--~~~~~~~~~~~i~~~~~~---------~~l~~yd~~t~~~~~i 343 (362)
..++...++.+....... .. ..-+.+..+|.+++.... .+++.++++ ++.+.+
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 444447888887774221 22 334566677888776431 468889998 665544
No 75
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=76.24 E-value=65 Score=29.73 Aligned_cols=119 Identities=11% Similarity=0.141 Sum_probs=69.5
Q ss_pred ECceEEEEeecCCCCccEEEEEECCCc------eeeEecCCCCCCCCCCCCCCCceeEEEEEcC-eEEEEEecC-----C
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMSDE------VFEEIKGPNFPQITTYDESEMTSWRIGIYDG-SLSLLYSEE-----S 283 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~~~------~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g-~L~l~~~~~-----~ 283 (362)
.+|..+|.+.++ .|...|++.. .|..+..-... +.|...+..... ..-+| +|++..... .
T Consensus 204 ~dg~~~~vs~eG-----~V~~id~~~~~~~~~~~~~~~~~~~~~--~~wrP~g~q~ia-~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 204 KSGRLVWPTYTG-----KIFQIDLSSGDAKFLPAIEAFTEAEKA--DGWRPGGWQQVA-YHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred CCCcEEEEecCC-----eEEEEecCCCcceecceeeeccccccc--cccCCCcceeEE-EcCCCCEEEEEecCCcccccc
Confidence 379999999987 8999996543 23333211110 112222222111 22234 455544211 1
Q ss_pred CCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCe-EEEEEe--CCeEEEEECCCCe-EEEE
Q 041235 284 GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGE-FFLESS--DNRLVLYDSRYEE-IRDL 343 (362)
Q Consensus 284 ~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~~--~~~l~~yd~~t~~-~~~i 343 (362)
...=.||+++-.+++.+.+|... .....+.+..+++ .++..+ ++.+.++|..+++ ++.+
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 22237888877888999988743 2345667778888 665443 5779999999975 4666
No 76
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=75.72 E-value=5.3 Score=23.40 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=19.5
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCC
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSD 241 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~ 241 (362)
..++..+|.+|..+.++ .+.+||..+
T Consensus 15 ~~~~v~~g~vyv~~~dg-----~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-----NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-----EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-----EEEEEeCCC
Confidence 45688899999999887 899999865
No 77
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=74.68 E-value=6.2 Score=22.92 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=19.4
Q ss_pred eEEEEEeCCeEEEEECCCCeEEEEE
Q 041235 320 EFFLESSDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 320 ~i~~~~~~~~l~~yd~~t~~~~~i~ 344 (362)
.+++...++.++++|.+|++..+-.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEee
Confidence 4555555889999999999987643
No 78
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=74.43 E-value=91 Score=30.60 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=61.9
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCC--ceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSD--EVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSF 287 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~--~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 287 (362)
..++..+|.+|..+..+ .|.++|..+ +.|+.- ..|.... .-.........++..+|++++.... .
T Consensus 63 stPvv~~g~vyv~s~~g-----~v~AlDa~TGk~lW~~~~~~~~~~~--~~~~~~~~~rg~av~~~~v~v~t~d--g--- 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-----RVYALDAKTGKELWKYDPKLPDDVI--PVMCCDVVNRGVALYDGKVFFGTLD--A--- 130 (527)
T ss_pred cCCEEECCEEEEECCCC-----cEEEEECCCCceeeEecCCCCcccc--cccccccccccceEECCEEEEEcCC--C---
Confidence 46788899999977766 799999876 456542 3332220 0000001112344556666654431 1
Q ss_pred EEEEEcC----CeeeEEEEecCCC---cceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEEE
Q 041235 288 SLWMMKG----GFWTKHLSFGPFM---EAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 288 ~iW~l~~----~~W~~~~~i~~~~---~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i 343 (362)
.+..|+- ..|..... .+.. ....|+.. ++.+++... .+.+++||.+|++..+-
T Consensus 131 ~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEEECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 2334433 45654321 1110 11233332 456655432 46899999999987653
No 79
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=74.31 E-value=87 Score=32.29 Aligned_cols=32 Identities=6% Similarity=0.202 Sum_probs=25.6
Q ss_pred CCccEEECceEEEEeecCCCCccEEEEEECCC--ceeeE
Q 041235 210 STDNVYLNGYCYWVASGHNSYNASILSFSMSD--EVFEE 246 (362)
Q Consensus 210 ~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~--~~~~~ 246 (362)
...++.++|.+|..+..+ .|+++|..| +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~-----~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN-----KVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCC-----eEEEEECCCCcEEEEE
Confidence 466889999999987766 899999775 56654
No 80
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=74.10 E-value=55 Score=28.41 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=80.5
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCC----ceeeEecCCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSD----EVFEEIKGPNFPQIT 256 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~----~~~~~i~~P~~~~~~ 256 (362)
....+|+..+++++.+..... .++ +...+.-||.+.-.++.. .....+-.|+..+ ..|... +....
T Consensus 46 a~s~~yD~~tn~~rpl~v~td--~FC---Sgg~~L~dG~ll~tGG~~-~G~~~ir~~~p~~~~~~~~w~e~--~~~m~-- 115 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTD--TFC---SGGAFLPDGRLLQTGGDN-DGNKAIRIFTPCTSDGTCDWTES--PNDMQ-- 115 (243)
T ss_pred EEEEEEecCCCcEEeccCCCC--Ccc---cCcCCCCCCCEEEeCCCC-ccccceEEEecCCCCCCCCceEC--ccccc--
Confidence 456789999999998776322 123 234566688877665543 2344677888765 455433 22221
Q ss_pred CCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcC-----CeeeEEEEec--CCCcceeeEEEeeCCeEEEEEeCC
Q 041235 257 TYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKG-----GFWTKHLSFG--PFMEAYQPLGFWRNGEFFLESSDN 328 (362)
Q Consensus 257 ~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~-----~~W~~~~~i~--~~~~~~~~~~~~~~~~i~~~~~~~ 328 (362)
.......... -+|++.++.... .-+.+.|--+. ..|....... .....+=.+.+..+|++|+... .
T Consensus 116 ----~~RWYpT~~~L~DG~vlIvGG~~-~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-~ 189 (243)
T PF07250_consen 116 ----SGRWYPTATTLPDGRVLIVGGSN-NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-R 189 (243)
T ss_pred ----CCCccccceECCCCCEEEEeCcC-CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-C
Confidence 1123334433 378888887653 33344443211 1121111111 0112233445567899887754 4
Q ss_pred eEEEEECCCCeE-EEEE
Q 041235 329 RLVLYDSRYEEI-RDLE 344 (362)
Q Consensus 329 ~l~~yd~~t~~~-~~i~ 344 (362)
+-..||.+++++ +.++
T Consensus 190 ~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 190 GSIIYDYKTNTVVRTLP 206 (243)
T ss_pred CcEEEeCCCCeEEeeCC
Confidence 567789999976 5554
No 81
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=71.63 E-value=6.9 Score=37.10 Aligned_cols=149 Identities=10% Similarity=0.049 Sum_probs=80.8
Q ss_pred EEEeccccceecccCCCCCC--CCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceecc
Q 041235 120 YLWNVSMNEYRIVTKRKARL--PCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLE 197 (362)
Q Consensus 120 ~v~NP~T~~~~~LP~~~~~~--~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 197 (362)
..=-|.+-.|-.+|+..... .......+..+.|.+++.++--++.+. +.+. .......+|+-+.+.|..+.
T Consensus 232 i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGG---WdG~----~~l~DFW~Y~v~e~~W~~iN 304 (723)
T KOG2437|consen 232 ISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGG---WDGT----QDLADFWAYSVKENQWTCIN 304 (723)
T ss_pred hhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecC---cccc----hhHHHHHhhcCCcceeEEee
Confidence 33445677777777654211 111222344666777776654444433 2221 11135678999999999876
Q ss_pred cCcccceeecCCCCccEEECc--eEEEEeecCC-------CCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE
Q 041235 198 GLFQMGHYYGSDSTDNVYLNG--YCYWVASGHN-------SYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI 268 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~v~~~G--~lywl~~~~~-------~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l 268 (362)
.....|.-. .+..+|..-. ++|.++..-. +.+.-+-.||.+++.|..+..-...+ + .+...-.+++
T Consensus 305 ~~t~~PG~R--sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~d--G-GP~~vfDHqM 379 (723)
T KOG2437|consen 305 RDTEGPGAR--SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAAD--G-GPKLVFDHQM 379 (723)
T ss_pred cCCCCCcch--hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccccccc--C-Ccceeeccee
Confidence 522222111 2345565544 7887764321 34667999999999999886544331 0 0111123445
Q ss_pred EEEcCe--EEEEEe
Q 041235 269 GIYDGS--LSLLYS 280 (362)
Q Consensus 269 ~~~~g~--L~l~~~ 280 (362)
++...+ +|+..+
T Consensus 380 ~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 380 CVDSEKHMIYVFGG 393 (723)
T ss_pred eEecCcceEEEecC
Confidence 555444 666654
No 82
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=70.44 E-value=85 Score=28.56 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=84.6
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEec----CCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIK----GPNFPQIT 256 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~ 256 (362)
-++.+|+..++.=...... ..+-..| +.+-..+-||.+=++..+- ++.-.++.||....+++.++ +|....
T Consensus 167 Dri~~y~~~dg~L~~~~~~-~v~~G~G-PRHi~FHpn~k~aY~v~EL-~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~-- 241 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPA-EVKPGAG-PRHIVFHPNGKYAYLVNEL-NSTVDVLEYNPAVGKFEELQTIDTLPEDFT-- 241 (346)
T ss_pred ceEEEEEcccCcccccccc-ccCCCCC-cceEEEcCCCcEEEEEecc-CCEEEEEEEcCCCceEEEeeeeccCccccC--
Confidence 4788999988766555441 0111111 2222334467644444432 23445666666668887663 677652
Q ss_pred CCCCCCCceeEE-EEEcCe-EEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe--CCe-
Q 041235 257 TYDESEMTSWRI-GIYDGS-LSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS--DNR- 329 (362)
Q Consensus 257 ~~~~~~~~~~~l-~~~~g~-L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~--~~~- 329 (362)
+ ......+ +.-+|+ |++... ..+.+.+..+++ ..=+.+...+..--..+.+-+..+|++++... +..
T Consensus 242 ---g-~~~~aaIhis~dGrFLYasNR--g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 242 ---G-TNWAAAIHISPDGRFLYASNR--GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNI 315 (346)
T ss_pred ---C-CCceeEEEECCCCCEEEEecC--CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcE
Confidence 2 2223334 445666 444433 566788888877 33222222221112367778878888776643 333
Q ss_pred -EEEEECCCCeEEEEEE
Q 041235 330 -LVLYDSRYEEIRDLEI 345 (362)
Q Consensus 330 -l~~yd~~t~~~~~i~~ 345 (362)
++.-|.+|+++..+..
T Consensus 316 ~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 316 TVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEEcCCCceEEeccc
Confidence 6666888898887753
No 83
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=70.00 E-value=5.3 Score=24.65 Aligned_cols=21 Identities=5% Similarity=0.395 Sum_probs=17.7
Q ss_pred CcEEEEeccccceecccCCCC
Q 041235 117 ENIYLWNVSMNEYRIVTKRKA 137 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~ 137 (362)
.+++++||.|++|..++..|.
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred cCEEEEECCCCEEEECCCCCC
Confidence 468999999999999966554
No 84
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=69.74 E-value=13 Score=27.82 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=29.3
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEE
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLIL 167 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 167 (362)
-.+.+.||.||.|... .+.... ...+.+-+++..+.|+|++..
T Consensus 9 A~Vm~~d~~tk~W~P~--~~~~~~------ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPA--GGGSQG------FSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcC--CCCCCC------cceEEEEEcCCCCEEEEEEee
Confidence 3578999999987643 321111 125667778888999999864
No 85
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=69.29 E-value=11 Score=26.98 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=14.7
Q ss_pred CCeEEEEECCCCeEEEEE
Q 041235 327 DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 327 ~~~l~~yd~~t~~~~~i~ 344 (362)
.++++.||++||+.+.+.
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 488999999999987654
No 86
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=69.12 E-value=1.1e+02 Score=29.24 Aligned_cols=112 Identities=12% Similarity=0.090 Sum_probs=66.3
Q ss_pred cEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEE
Q 041235 213 NVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMM 292 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l 292 (362)
-..++|-.+.+..++ ....++...+---++.-+..+ ...++...+. .++....++..+.|...
T Consensus 327 fa~~~Gd~ia~VSRG-----kaFi~~~~~~~~iqv~~~~~V----------rY~r~~~~~e--~~vigt~dgD~l~iyd~ 389 (668)
T COG4946 327 FAVVNGDYIALVSRG-----KAFIMRPWDGYSIQVGKKGGV----------RYRRIQVDPE--GDVIGTNDGDKLGIYDK 389 (668)
T ss_pred hccCCCcEEEEEecC-----cEEEECCCCCeeEEcCCCCce----------EEEEEccCCc--ceEEeccCCceEEEEec
Confidence 356789889888887 666676555444333333322 3334444444 33333335678888877
Q ss_pred cCCeeeEEEEecCCCcceeeEEEeeCCeE-EEEEeCCeEEEEECCCCeEEEEE
Q 041235 293 KGGFWTKHLSFGPFMEAYQPLGFWRNGEF-FLESSDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 293 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~~~l~~yd~~t~~~~~i~ 344 (362)
+.. ++.++...-+....+.+..+|+. ++.++..++.++|.+|++.+.+.
T Consensus 390 ~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 390 DGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred CCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 652 22333322223344556677775 45555678999999999988765
No 87
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=68.03 E-value=3.4 Score=37.20 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=32.9
Q ss_pred CCCCCCCHHHHHHHHccCC--------ccccccccccccchhhhcCC
Q 041235 2 TGYRELSHDLLVETLSRLP--------VKSLMRFRCVSKSWFSLLKD 40 (362)
Q Consensus 2 ~~~~~LP~dll~~IL~rLp--------~~~l~r~r~VcK~W~~li~~ 40 (362)
..|+.||.+++.+|+.|.. .++.+.+..||+.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4688999999999999985 23688999999999997653
No 88
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=68.02 E-value=1.1e+02 Score=28.95 Aligned_cols=142 Identities=11% Similarity=0.143 Sum_probs=76.0
Q ss_pred ccEEEEEcCCCCceeccc--CcccceeecCCCCccEEECce-EEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEG--LFQMGHYYGSDSTDNVYLNGY-CYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITT 257 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~--~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 257 (362)
-.+.+|..+...=..++. ....|+ .....+-+|. .-+.+.. +-.+.+||+.+.+.+.+..|....
T Consensus 235 ~~lrifqvDGk~N~~lqS~~l~~fPi-----~~a~f~p~G~~~i~~s~r----rky~ysyDle~ak~~k~~~~~g~e--- 302 (514)
T KOG2055|consen 235 GTLRIFQVDGKVNPKLQSIHLEKFPI-----QKAEFAPNGHSVIFTSGR----RKYLYSYDLETAKVTKLKPPYGVE--- 302 (514)
T ss_pred CcEEEEEecCccChhheeeeeccCcc-----ceeeecCCCceEEEeccc----ceEEEEeeccccccccccCCCCcc---
Confidence 356777766543333333 122222 2233444666 3333333 448999999999999998887762
Q ss_pred CCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEE-EEeCCeEEEEECC
Q 041235 258 YDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFL-ESSDNRLVLYDSR 336 (362)
Q Consensus 258 ~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~~~l~~yd~~ 336 (362)
...+.... +.-.+...++.+ ...-+.+--.+.++|..-..|+ +....+++..+++.++ +..++.++.+|++
T Consensus 303 --~~~~e~Fe-VShd~~fia~~G--~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~ 374 (514)
T KOG2055|consen 303 --EKSMERFE-VSHDSNFIAIAG--NNGHIHLLHAKTKELITSFKIE---GVVSDFTFSSDSKELLASGGTGEVYVWNLR 374 (514)
T ss_pred --cchhheeE-ecCCCCeEEEcc--cCceEEeehhhhhhhhheeeec---cEEeeEEEecCCcEEEEEcCCceEEEEecC
Confidence 11111111 112222222221 1223333333336666666664 3355666667777554 5568899999999
Q ss_pred CCeEEE
Q 041235 337 YEEIRD 342 (362)
Q Consensus 337 t~~~~~ 342 (362)
++....
T Consensus 375 ~~~~~~ 380 (514)
T KOG2055|consen 375 QNSCLH 380 (514)
T ss_pred CcceEE
Confidence 986643
No 89
>PLN02772 guanylate kinase
Probab=65.71 E-value=48 Score=31.01 Aligned_cols=75 Identities=11% Similarity=0.181 Sum_probs=50.2
Q ss_pred CCccEEECceEEEEeecCCC--CccEEEEEECCCceeeEe----cCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCC
Q 041235 210 STDNVYLNGYCYWVASGHNS--YNASILSFSMSDEVFEEI----KGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEES 283 (362)
Q Consensus 210 ~~~~v~~~G~lywl~~~~~~--~~~~il~fD~~~~~~~~i----~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~ 283 (362)
...+|..++++|.+++.... ....+..||..+.+|..- ..|... ..+..++.-+++|.++... .
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r---------~GhSa~v~~~~rilv~~~~-~ 96 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC---------KGYSAVVLNKDRILVIKKG-S 96 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC---------CcceEEEECCceEEEEeCC-C
Confidence 46688999999999875421 345899999999999753 234433 1233444456788777654 3
Q ss_pred CCEEEEEEEcC
Q 041235 284 GHSFSLWMMKG 294 (362)
Q Consensus 284 ~~~~~iW~l~~ 294 (362)
...=+||-|+-
T Consensus 97 ~~~~~~w~l~~ 107 (398)
T PLN02772 97 APDDSIWFLEV 107 (398)
T ss_pred CCccceEEEEc
Confidence 33468898864
No 90
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=64.96 E-value=93 Score=26.95 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=59.4
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEE--EEcCeEEEEEecCCCCEEEEEEEc
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIG--IYDGSLSLLYSEESGHSFSLWMMK 293 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~--~~~g~L~l~~~~~~~~~~~iW~l~ 293 (362)
.|.+..-++++ .+...|+++++++.. .--.. ..+.++ +.+|.+ +. ..++.+++||..+
T Consensus 126 enSi~~AgGD~-----~~y~~dlE~G~i~r~~rGHtD-----------YvH~vv~R~~~~qi--ls-G~EDGtvRvWd~k 186 (325)
T KOG0649|consen 126 ENSILFAGGDG-----VIYQVDLEDGRIQREYRGHTD-----------YVHSVVGRNANGQI--LS-GAEDGTVRVWDTK 186 (325)
T ss_pred CCcEEEecCCe-----EEEEEEecCCEEEEEEcCCcc-----------eeeeeeecccCcce--ee-cCCCccEEEEecc
Confidence 36776666655 899999999999764 32211 122322 233432 22 2267899999998
Q ss_pred CCeeeEEEEecCCC--c-----c-eeeEEEeeCCeEEEEEeCCeEEEEECCCCe
Q 041235 294 GGFWTKHLSFGPFM--E-----A-YQPLGFWRNGEFFLESSDNRLVLYDSRYEE 339 (362)
Q Consensus 294 ~~~W~~~~~i~~~~--~-----~-~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~ 339 (362)
... .+-.|.+.+ . . .-.-++..+.+.+++..+.++-.+++..-+
T Consensus 187 t~k--~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse 238 (325)
T KOG0649|consen 187 TQK--HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSE 238 (325)
T ss_pred ccc--eeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCC
Confidence 721 122233221 1 1 123445556778888778888888887654
No 91
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=64.42 E-value=1.1e+02 Score=27.61 Aligned_cols=106 Identities=15% Similarity=-0.013 Sum_probs=60.4
Q ss_pred ceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC-Ce
Q 041235 218 GYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG-GF 296 (362)
Q Consensus 218 G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~-~~ 296 (362)
+.+||....+. .|..+|..++.-+.++.|... ....+...+|.|..+. ..+.++..+. ..
T Consensus 37 ~~L~w~DI~~~----~i~r~~~~~g~~~~~~~p~~~----------~~~~~~d~~g~Lv~~~-----~g~~~~~~~~~~~ 97 (307)
T COG3386 37 GALLWVDILGG----RIHRLDPETGKKRVFPSPGGF----------SSGALIDAGGRLIACE-----HGVRLLDPDTGGK 97 (307)
T ss_pred CEEEEEeCCCC----eEEEecCCcCceEEEECCCCc----------ccceeecCCCeEEEEc-----cccEEEeccCCce
Confidence 46788877653 899999999999999999776 1223344444443332 2333344333 55
Q ss_pred eeEEEEecCCCc--ceeeEEEeeCCeEEEEEeC------------CeEEEEECCCCeEEE
Q 041235 297 WTKHLSFGPFME--AYQPLGFWRNGEFFLESSD------------NRLVLYDSRYEEIRD 342 (362)
Q Consensus 297 W~~~~~i~~~~~--~~~~~~~~~~~~i~~~~~~------------~~l~~yd~~t~~~~~ 342 (362)
|+.+........ ..--..+..+|.+++-... +.++.+|+..++.+.
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe
Confidence 555554442211 1222344556777664222 358999986555443
No 92
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=62.08 E-value=1.2e+02 Score=27.28 Aligned_cols=118 Identities=10% Similarity=0.111 Sum_probs=63.8
Q ss_pred ECceEEEEeecCCCCccEEEEEECC--CceeeEe----cCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEE
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMS--DEVFEEI----KGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFS 288 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~--~~~~~~i----~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~ 288 (362)
-+|...+.+.+. ...|.+||+. +++++.+ ..|.... ..... ..+ ..-+|+..++. ......+.
T Consensus 184 pdg~~lyv~~~~---~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~-~~i~~~pdg~~lyv~-~~~~~~I~ 253 (330)
T PRK11028 184 PNQQYAYCVNEL---NSSVDVWQLKDPHGEIECVQTLDMMPADFS-----DTRWA-ADIHITPDGRHLYAC-DRTASLIS 253 (330)
T ss_pred CCCCEEEEEecC---CCEEEEEEEeCCCCCEEEEEEEecCCCcCC-----CCccc-eeEEECCCCCEEEEe-cCCCCeEE
Confidence 455554444443 3478888876 3454332 2343320 11111 112 23356644443 33578999
Q ss_pred EEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe--CCeEEEEEC--CCCeEEEEE
Q 041235 289 LWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS--DNRLVLYDS--RYEEIRDLE 344 (362)
Q Consensus 289 iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~--~~~l~~yd~--~t~~~~~i~ 344 (362)
+|.++. ..++.+..++.. ...+.+.+..+|+.+++.. ++.+.+|+. +++.++.+.
T Consensus 254 v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred EEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 999976 466666655532 2234566777887666543 666777754 677777654
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=60.37 E-value=1.9e+02 Score=28.98 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=50.6
Q ss_pred EEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCccee
Q 041235 233 SILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQ 311 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~ 311 (362)
.|.-.|+..|...++..-.. ....+ ...++.+.+.+. +++++.||.-++ .+-.|.++.-..-
T Consensus 201 ~Ir~w~~~ge~l~~~~ghtn-----------~vYsis~~~~~~~Ivs~g--EDrtlriW~~~e----~~q~I~lPttsiW 263 (745)
T KOG0301|consen 201 SIRLWDLDGEVLLEMHGHTN-----------FVYSISMALSDGLIVSTG--EDRTLRIWKKDE----CVQVITLPTTSIW 263 (745)
T ss_pred eEEEEeccCceeeeeeccce-----------EEEEEEecCCCCeEEEec--CCceEEEeecCc----eEEEEecCccceE
Confidence 56666665555544432211 11233 355677777777 589999999874 3334443322233
Q ss_pred eEEEeeCCeEEEEEeCCeEEEEECC
Q 041235 312 PLGFWRNGEFFLESSDNRLVLYDSR 336 (362)
Q Consensus 312 ~~~~~~~~~i~~~~~~~~l~~yd~~ 336 (362)
...+..+|+|++...++.+.+|-.+
T Consensus 264 sa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 264 SAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEEeeCCCEEEeccCceEEEEEec
Confidence 4445567888777777777766655
No 94
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=59.05 E-value=55 Score=32.20 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=62.5
Q ss_pred eEEEEeecCCCCccEEEEEECCCceee----EecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC
Q 041235 219 YCYWVASGHNSYNASILSFSMSDEVFE----EIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 219 ~lywl~~~~~~~~~~il~fD~~~~~~~----~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
.||-..+++ .|.-||.....|+ .+..|... ......+.-..|+.++|... ++.++..|.++.
T Consensus 66 iLavadE~G-----~i~l~dt~~~~fr~ee~~lk~~~aH--------~nAifDl~wapge~~lVsas-GDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 66 ILAVADEDG-----GIILFDTKSIVFRLEERQLKKPLAH--------KNAIFDLKWAPGESLLVSAS-GDSTIRPWDVKT 131 (720)
T ss_pred eEEEecCCC-----ceeeecchhhhcchhhhhhcccccc--------cceeEeeccCCCceeEEEcc-CCceeeeeeecc
Confidence 345444555 8999999998887 13334333 22445565566888888876 788999999988
Q ss_pred CeeeEEE-EecCCCcceeeEEEeeCCeEEEEE--eCCeEEEEECCCCe
Q 041235 295 GFWTKHL-SFGPFMEAYQPLGFWRNGEFFLES--SDNRLVLYDSRYEE 339 (362)
Q Consensus 295 ~~W~~~~-~i~~~~~~~~~~~~~~~~~i~~~~--~~~~l~~yd~~t~~ 339 (362)
..=.-.. -++. .+-...+|+...+..+|+. .++.+.++|.+.+.
T Consensus 132 s~l~G~~~~~GH-~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 132 SRLVGGRLNLGH-TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred ceeecceeeccc-ccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 3211111 1111 1223445555555444432 36777777777655
No 95
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=58.46 E-value=1.3e+02 Score=26.46 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=68.4
Q ss_pred ECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
.+|.+|=-++.. ....|..+|+.+++. +..++|... ---.++..+++|+.+.- .....-++..+
T Consensus 54 ~~g~LyESTG~y--G~S~l~~~d~~tg~~~~~~~l~~~~----------FgEGit~~~d~l~qLTW--k~~~~f~yd~~- 118 (264)
T PF05096_consen 54 DDGTLYESTGLY--GQSSLRKVDLETGKVLQSVPLPPRY----------FGEGITILGDKLYQLTW--KEGTGFVYDPN- 118 (264)
T ss_dssp ETTEEEEEECST--TEEEEEEEETTTSSEEEEEE-TTT------------EEEEEEETTEEEEEES--SSSEEEEEETT-
T ss_pred CCCEEEEeCCCC--CcEEEEEEECCCCcEEEEEECCccc----------cceeEEEECCEEEEEEe--cCCeEEEEccc-
Confidence 467777766654 266899999999877 467899765 12357778999999886 35555555553
Q ss_pred CeeeEEEEecCCCcceeeEEEeeCC-eEEEEEeCCeEEEEECCCCe-EEEEEEe
Q 041235 295 GFWTKHLSFGPFMEAYQPLGFWRNG-EFFLESSDNRLVLYDSRYEE-IRDLEIT 346 (362)
Q Consensus 295 ~~W~~~~~i~~~~~~~~~~~~~~~~-~i~~~~~~~~l~~yd~~t~~-~~~i~~~ 346 (362)
..+++.++... ...=|++.++ .+++...+.++...|+++-+ .+.|.+.
T Consensus 119 -tl~~~~~~~y~---~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 119 -TLKKIGTFPYP---GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp -TTEEEEEEE-S---SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred -cceEEEEEecC---CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 34455555432 1222333454 46777778999999999854 4556543
No 96
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=58.41 E-value=1.4e+02 Score=26.85 Aligned_cols=135 Identities=11% Similarity=0.078 Sum_probs=67.3
Q ss_pred ccEEEEEcCC-CCceecccCcccceeecCCCCccEE--ECce-EEEEeecCCCCccEEEEEECC-CceeeEec-CCCCCC
Q 041235 181 LPVAIYNFST-NSWRDLEGLFQMGHYYGSDSTDNVY--LNGY-CYWVASGHNSYNASILSFSMS-DEVFEEIK-GPNFPQ 254 (362)
Q Consensus 181 ~~~~vyss~~-~~W~~~~~~~~~~~~~~~~~~~~v~--~~G~-lywl~~~~~~~~~~il~fD~~-~~~~~~i~-~P~~~~ 254 (362)
-.+.+|+..+ +.++.+..... . .....+. -+|. +|..... ...|.+|++. ++.++.+. .|...
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~----~--~~~~~l~~spd~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~~~~~- 80 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDV----P--GQVQPMVISPDKRHLYVGVRP----EFRVLSYRIADDGALTFAAESPLPG- 80 (330)
T ss_pred CCEEEEEECCCCceeeeeEEec----C--CCCccEEECCCCCEEEEEECC----CCcEEEEEECCCCceEEeeeecCCC-
Confidence 3567777753 56655544110 0 0112222 2564 4554432 3478888886 45555442 22111
Q ss_pred CCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcC-C-eeeEEEEecCCCcceeeEEEeeCCeEEEEEe--CCe
Q 041235 255 ITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKG-G-FWTKHLSFGPFMEAYQPLGFWRNGEFFLESS--DNR 329 (362)
Q Consensus 255 ~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~-~-~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~--~~~ 329 (362)
. . ..+ ..-+|+..++... ....+.+|.+++ . ....+..+... .....+.+..+++.+++.. ++.
T Consensus 81 -------~-p-~~i~~~~~g~~l~v~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~ 149 (330)
T PRK11028 81 -------S-P-THISTDHQGRFLFSASY-NANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDR 149 (330)
T ss_pred -------C-c-eEEEECCCCCEEEEEEc-CCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCE
Confidence 1 1 133 3346765444433 478999999974 2 22223322211 1123344566776655433 688
Q ss_pred EEEEECCC
Q 041235 330 LVLYDSRY 337 (362)
Q Consensus 330 l~~yd~~t 337 (362)
+.+||+++
T Consensus 150 v~v~d~~~ 157 (330)
T PRK11028 150 IRLFTLSD 157 (330)
T ss_pred EEEEEECC
Confidence 99999976
No 97
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=57.94 E-value=1.4e+02 Score=26.57 Aligned_cols=224 Identities=14% Similarity=0.062 Sum_probs=115.3
Q ss_pred ceeeecccccEEEee--cCcEEEEeccccceecccCCCCCCCCCC-------cc--ceeeeEEeecCCCCCeEEEEEEEE
Q 041235 101 HNPLGPCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNT-------SI--YCYNFGLGLDPTTNDFKLVLILTL 169 (362)
Q Consensus 101 ~~~~~s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~-------~~--~~~~~~l~~d~~~~~ykvv~~~~~ 169 (362)
+.+.-+-+|-|-+.. ...+--.||.|++....|......+... .+ .......-+|+.+..++=+-+-.
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~- 143 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL- 143 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc-
Confidence 344445577666655 3456667999999998887654332210 00 00001111223222222111110
Q ss_pred ecCCcccccCCccEEEEEcCCCCceeccc---------Cccccee---ec-CCCCccEEECceEEEEeecCCCCccEEEE
Q 041235 170 YDGKRLSVHDLLPVAIYNFSTNSWRDLEG---------LFQMGHY---YG-SDSTDNVYLNGYCYWVASGHNSYNASILS 236 (362)
Q Consensus 170 ~~~~~~~~~~~~~~~vyss~~~~W~~~~~---------~~~~~~~---~~-~~~~~~v~~~G~lywl~~~~~~~~~~il~ 236 (362)
+..+.+ +...||+...+.|-.-+. ...+..+ .+ ....-++.-||.+|+-.--+ ..|.-
T Consensus 144 --~~a~~n---let~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag----naiar 214 (353)
T COG4257 144 --EHADAN---LETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG----NAIAR 214 (353)
T ss_pred --ccCCCc---ccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc----cceEE
Confidence 001112 788899999999964332 0011111 11 01222345589998765443 37999
Q ss_pred EECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEE
Q 041235 237 FSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGF 315 (362)
Q Consensus 237 fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 315 (362)
.|.-+..-++++.|...- .. .+.+ ...-|++....- ....+.-..-...+|.. +.++-.......+.+
T Consensus 215 idp~~~~aev~p~P~~~~-----~g---sRriwsdpig~~wittw--g~g~l~rfdPs~~sW~e-ypLPgs~arpys~rV 283 (353)
T COG4257 215 IDPFAGHAEVVPQPNALK-----AG---SRRIWSDPIGRAWITTW--GTGSLHRFDPSVTSWIE-YPLPGSKARPYSMRV 283 (353)
T ss_pred cccccCCcceecCCCccc-----cc---ccccccCccCcEEEecc--CCceeeEeCccccccee-eeCCCCCCCcceeee
Confidence 999999999999998741 11 1111 222344333321 11122211111245543 344433333445566
Q ss_pred eeCCeEEEEE-eCCeEEEEECCCCeEEEEEE
Q 041235 316 WRNGEFFLES-SDNRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 316 ~~~~~i~~~~-~~~~l~~yd~~t~~~~~i~~ 345 (362)
+..|.+.+.. ..+-+.-||++|.++..+.+
T Consensus 284 D~~grVW~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 284 DRHGRVWLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ccCCcEEeeccccCceeecCcccceEEEecC
Confidence 6667777754 46779999999999998775
No 98
>PF13013 F-box-like_2: F-box-like domain
Probab=53.42 E-value=5.2 Score=29.84 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHccCCcccccccccccc
Q 041235 4 YRELSHDLLVETLSRLPVKSLMRFRCVSK 32 (362)
Q Consensus 4 ~~~LP~dll~~IL~rLp~~~l~r~r~VcK 32 (362)
..+||+||+..|+..-..+.+......|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56799999999999999888876666666
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.32 E-value=2.2e+02 Score=26.92 Aligned_cols=116 Identities=13% Similarity=0.155 Sum_probs=68.9
Q ss_pred ccEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEE
Q 041235 212 DNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLW 290 (362)
Q Consensus 212 ~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW 290 (362)
..++=||.++-.+... ..+-.||+.+.. ..-.+|..- .....+ ..-||- +|+... ++..+.+|
T Consensus 353 ~~fHpDgLifgtgt~d----~~vkiwdlks~~-~~a~Fpght---------~~vk~i~FsENGY-~Lat~a-dd~~V~lw 416 (506)
T KOG0289|consen 353 AAFHPDGLIFGTGTPD----GVVKIWDLKSQT-NVAKFPGHT---------GPVKAISFSENGY-WLATAA-DDGSVKLW 416 (506)
T ss_pred eeEcCCceEEeccCCC----ceEEEEEcCCcc-ccccCCCCC---------CceeEEEeccCce-EEEEEe-cCCeEEEE
Confidence 3456688887776654 367788988877 555667543 122233 333454 344433 35559999
Q ss_pred EEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEEEE
Q 041235 291 MMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 291 ~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~i~ 344 (362)
-|....=-+.+.++-. .-...+.++..|..+.+. .+-.++.|+.+++.|..+.
T Consensus 417 DLRKl~n~kt~~l~~~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 417 DLRKLKNFKTIQLDEK-KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred Eehhhcccceeecccc-ccceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 9977221122222211 123445566667766554 4677899999999998876
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=50.38 E-value=25 Score=33.55 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=45.2
Q ss_pred EEEcCeEEEEEecCCCCEEEEEEEcC-----CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-------CCeEEEEECC
Q 041235 269 GIYDGSLSLLYSEESGHSFSLWMMKG-----GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-------DNRLVLYDSR 336 (362)
Q Consensus 269 ~~~~g~L~l~~~~~~~~~~~iW~l~~-----~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-------~~~l~~yd~~ 336 (362)
..++|...+... .+.++.+|-|.+ ..|+-+.+.- -....|+..+.++++-.+ .+.|++||..
T Consensus 372 FS~dg~~LlSRg--~D~tLKvWDLrq~kkpL~~~tgL~t~~----~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 372 FSYDGNYLLSRG--FDDTLKVWDLRQFKKPLNVRTGLPTPF----PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred eccccchhhhcc--CCCceeeeeccccccchhhhcCCCccC----CCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 445565444444 588999999987 3444333322 234556667888888654 4569999987
Q ss_pred CC-eEEEEEEec
Q 041235 337 YE-EIRDLEITG 347 (362)
Q Consensus 337 t~-~~~~i~~~~ 347 (362)
|= ++.+|.+.+
T Consensus 446 t~d~v~ki~i~~ 457 (641)
T KOG0772|consen 446 TLDTVYKIDIST 457 (641)
T ss_pred ceeeEEEecCCC
Confidence 63 345565553
No 101
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=46.40 E-value=87 Score=27.14 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=39.8
Q ss_pred CCEEEEEEEcC--------CeeeEEEEecC-CCccee--eEEEe-eCCeEEEEEeCCeEEEEECCCCeEEEE
Q 041235 284 GHSFSLWMMKG--------GFWTKHLSFGP-FMEAYQ--PLGFW-RNGEFFLESSDNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 284 ~~~~~iW~l~~--------~~W~~~~~i~~-~~~~~~--~~~~~-~~~~i~~~~~~~~l~~yd~~t~~~~~i 343 (362)
+..+.=|...+ ..|+.+..+.- ...+.. .+.+. .++.+++...+..++..|++++++++.
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 46788888776 45766543321 111222 23333 457889988899999999999999865
No 102
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=46.18 E-value=2.2e+02 Score=25.54 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=43.9
Q ss_pred eeEEEEEcCeEEEEEecCCCCEEEEEEEcCCe-eeEEEEecCCCcceeeEEEeeCCeEEEEEe---CCeEEEEECCCCeE
Q 041235 265 SWRIGIYDGSLSLLYSEESGHSFSLWMMKGGF-WTKHLSFGPFMEAYQPLGFWRNGEFFLESS---DNRLVLYDSRYEEI 340 (362)
Q Consensus 265 ~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~-W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~---~~~l~~yd~~t~~~ 340 (362)
...+..++|+|.+.. +..+.++.+++.. +.+........ ....+...++.+++.+ +-.++.|+.+.+++
T Consensus 91 V~ai~~~~~~lv~~~----g~~l~v~~l~~~~~l~~~~~~~~~~---~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l 163 (321)
T PF03178_consen 91 VTAICSFNGRLVVAV----GNKLYVYDLDNSKTLLKKAFYDSPF---YITSLSVFKNYILVGDAMKSVSLLRYDEENNKL 163 (321)
T ss_dssp EEEEEEETTEEEEEE----TTEEEEEEEETTSSEEEEEEE-BSS---SEEEEEEETTEEEEEESSSSEEEEEEETTTE-E
T ss_pred ceEhhhhCCEEEEee----cCEEEEEEccCcccchhhheecceE---EEEEEeccccEEEEEEcccCEEEEEEEccCCEE
Confidence 457888899844443 6799999999965 88888776432 2223322244444443 33355667766667
Q ss_pred EEEE
Q 041235 341 RDLE 344 (362)
Q Consensus 341 ~~i~ 344 (362)
..+.
T Consensus 164 ~~va 167 (321)
T PF03178_consen 164 ILVA 167 (321)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 103
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=45.47 E-value=53 Score=25.05 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=24.3
Q ss_pred eeCCeEEEEEe-----CCeEEEEECCCCeEEEEEEe
Q 041235 316 WRNGEFFLESS-----DNRLVLYDSRYEEIRDLEIT 346 (362)
Q Consensus 316 ~~~~~i~~~~~-----~~~l~~yd~~t~~~~~i~~~ 346 (362)
.-+|-++.... ...+++||+++.+++.++..
T Consensus 3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P 38 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP 38 (129)
T ss_pred EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee
Confidence 34788866543 47799999999999998874
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.55 E-value=2.6e+02 Score=25.28 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=63.3
Q ss_pred CCccEEECceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEEEEcCeE---EEEEecCCCC
Q 041235 210 STDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIGIYDGSL---SLLYSEESGH 285 (362)
Q Consensus 210 ~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~~~~g~L---~l~~~~~~~~ 285 (362)
.-.+|-++|-.-.-+.. ...|-.||+.+..--. +--|... .....+.+.+ .|+... ++.
T Consensus 45 sitavAVs~~~~aSGss----DetI~IYDm~k~~qlg~ll~Hags------------itaL~F~~~~S~shLlS~s-dDG 107 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSS----DETIHIYDMRKRKQLGILLSHAGS------------ITALKFYPPLSKSHLLSGS-DDG 107 (362)
T ss_pred ceeEEEecceeEeccCC----CCcEEEEeccchhhhcceeccccc------------eEEEEecCCcchhheeeec-CCC
Confidence 34567777764333332 3479999988764422 2222211 1112222222 333333 577
Q ss_pred EEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEE-EEeCCeEEEEECCCCeE
Q 041235 286 SFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFL-ESSDNRLVLYDSRYEEI 340 (362)
Q Consensus 286 ~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~~~l~~yd~~t~~~ 340 (362)
.+.||.. ++|+.+..+-....-...+.+++.|++-+ +.++..+-.+|+-+++-
T Consensus 108 ~i~iw~~--~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 108 HIIIWRV--GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cEEEEEc--CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 8899988 67988888876655566677777777744 34455555666655443
No 105
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=41.72 E-value=4.9e+02 Score=28.23 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=43.8
Q ss_pred EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecC---C------Ccc--eeeEEEeeCCeEEEEEe-CCeEEEEECC
Q 041235 269 GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGP---F------MEA--YQPLGFWRNGEFFLESS-DNRLVLYDSR 336 (362)
Q Consensus 269 ~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~---~------~~~--~~~~~~~~~~~i~~~~~-~~~l~~yd~~ 336 (362)
+.-+|.|+++.. ...++.+|..+......+...+. . ... ...+++..+|.+|+... ++.+-.+|++
T Consensus 811 vd~dG~LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 811 CAKDGQIYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred EeCCCcEEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 345678877765 57789999876643333322110 0 011 23455667788887765 6779999999
Q ss_pred CCeE
Q 041235 337 YEEI 340 (362)
Q Consensus 337 t~~~ 340 (362)
+++.
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 9875
No 106
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=41.61 E-value=2.8e+02 Score=25.38 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=69.9
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEe---cCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEc
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEI---KGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMK 293 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~ 293 (362)
+|.+-|...-+ ...|..||+..+..+.. .+++.. ....-+.--+|+++.+..+ -..++.+|..+
T Consensus 155 ~~~~l~v~DLG---~Dri~~y~~~dg~L~~~~~~~v~~G~---------GPRHi~FHpn~k~aY~v~E-L~stV~v~~y~ 221 (346)
T COG2706 155 DGRYLVVPDLG---TDRIFLYDLDDGKLTPADPAEVKPGA---------GPRHIVFHPNGKYAYLVNE-LNSTVDVLEYN 221 (346)
T ss_pred CCCEEEEeecC---CceEEEEEcccCccccccccccCCCC---------CcceEEEcCCCcEEEEEec-cCCEEEEEEEc
Confidence 45555555444 55888888887666432 344443 2334456668998777654 78899999998
Q ss_pred C--CeeeEEEEecCC-C-----cceeeEEEeeCCeEEEEEe----CCeEEEEECCCCeEEEEEE
Q 041235 294 G--GFWTKHLSFGPF-M-----EAYQPLGFWRNGEFFLESS----DNRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 294 ~--~~W~~~~~i~~~-~-----~~~~~~~~~~~~~i~~~~~----~~~l~~yd~~t~~~~~i~~ 345 (362)
. .+-+.+-++... . ....-+-+..+|..+...+ .-.++.-|+.+++++-+..
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 8 555555555421 1 1234455667787655432 2235556667777776654
No 107
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=40.67 E-value=66 Score=30.89 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=74.7
Q ss_pred CCCccEEECc--eEEEEeecCCC-CccEEEEEECCCceeeEec----CCCCCCCCCCCCCCCceeEEEEEcCeEEEEEec
Q 041235 209 DSTDNVYLNG--YCYWVASGHNS-YNASILSFSMSDEVFEEIK----GPNFPQITTYDESEMTSWRIGIYDGSLSLLYSE 281 (362)
Q Consensus 209 ~~~~~v~~~G--~lywl~~~~~~-~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~ 281 (362)
....+|...| ++|..++=... .-.-.-+|+...+.|..+. .|.... ...+ .+-+...||+|...+
T Consensus 262 gGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs------CHRM--Vid~S~~KLYLlG~Y 333 (723)
T KOG2437|consen 262 GGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARS------CHRM--VIDISRRKLYLLGRY 333 (723)
T ss_pred CcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchh------hhhh--hhhhhHhHHhhhhhc
Confidence 3567899988 89988753311 1124677889999998874 454431 1111 122334567776543
Q ss_pred C-------CCCEEEEEEEcC--CeeeEEEEecCCC----c-ceeeEEEeeCCe-EEEEEe---------CCeEEEEECCC
Q 041235 282 E-------SGHSFSLWMMKG--GFWTKHLSFGPFM----E-AYQPLGFWRNGE-FFLESS---------DNRLVLYDSRY 337 (362)
Q Consensus 282 ~-------~~~~~~iW~l~~--~~W~~~~~i~~~~----~-~~~~~~~~~~~~-i~~~~~---------~~~l~~yd~~t 337 (362)
- ....-++|+.+- ..|.....=.-.+ . +-.-+++.++.. +++.+. -..+++||...
T Consensus 334 ~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~ 413 (723)
T KOG2437|consen 334 LDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQC 413 (723)
T ss_pred cccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCC
Confidence 2 455679999987 7898764211111 1 122344544433 444432 25699999999
Q ss_pred CeEEEEE
Q 041235 338 EEIRDLE 344 (362)
Q Consensus 338 ~~~~~i~ 344 (362)
..|+.+.
T Consensus 414 ~~w~~l~ 420 (723)
T KOG2437|consen 414 QTWKLLR 420 (723)
T ss_pred ccHHHHH
Confidence 9987543
No 108
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=40.48 E-value=3.5e+02 Score=26.18 Aligned_cols=31 Identities=10% Similarity=0.316 Sum_probs=24.6
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCC--ceeeE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSD--EVFEE 246 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~--~~~~~ 246 (362)
..++..+|.+|....++ .+.++|..+ ..|+.
T Consensus 55 ~sPvv~~g~vy~~~~~g-----~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 55 GTPLVVDGDMYFTTSHS-----ALFALDAATGKVLWRY 87 (488)
T ss_pred cCCEEECCEEEEeCCCC-----cEEEEECCCChhhcee
Confidence 46789999999987776 899999875 45654
No 109
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.15 E-value=2.7e+02 Score=24.79 Aligned_cols=109 Identities=13% Similarity=0.233 Sum_probs=60.0
Q ss_pred ccEEEEEcCCCCceecccCc-c--cceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecC-C-CCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLF-Q--MGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKG-P-NFPQI 255 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~-~--~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~-P-~~~~~ 255 (362)
..+.+|+..+.+|....... . ....+ ....-+++.|.+-.-.. ....+..||..+.+|..+.- . ..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~--~~~~~Llv~G~ft~~~~----~~~~la~yd~~~~~w~~~~~~~s~~i-- 87 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQW--ASNNQLLVGGNFTLNGT----NSSNLATYDFKNQTWSSLGGGSSNSI-- 87 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEE--ecCCEEEEEEeeEECCC----CceeEEEEecCCCeeeecCCcccccC--
Confidence 57899999999999887621 1 01111 23455666665554331 25589999999999987754 2 122
Q ss_pred CCCCCCCCceeEEEEEcC-eEEEEEecCCCCEEEEEEEcCCeeeEEEE
Q 041235 256 TTYDESEMTSWRIGIYDG-SLSLLYSEESGHSFSLWMMKGGFWTKHLS 302 (362)
Q Consensus 256 ~~~~~~~~~~~~l~~~~g-~L~l~~~~~~~~~~~iW~l~~~~W~~~~~ 302 (362)
+...........++ .+.+.... ....--|...+...|..+..
T Consensus 88 ----pgpv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 88 ----PGPVTALTFISNDGSNFWVAGRS-ANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred ----CCcEEEEEeeccCCceEEEecee-cCCCceEEEEcCCceEeccc
Confidence 11111112222233 35444432 22223344446688988765
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=39.86 E-value=2.5e+02 Score=24.22 Aligned_cols=112 Identities=17% Similarity=0.077 Sum_probs=54.8
Q ss_pred ECceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
-+|.+.+.+... ...+..+|..+..... +..+... .. ....-+|+..++... ....+.+|.++.
T Consensus 124 ~dg~~l~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~----------~~-~~~s~dg~~l~~~~~-~~~~v~i~d~~~ 188 (300)
T TIGR03866 124 PDGKIVVNTSET---TNMAHFIDTKTYEIVDNVLVDQRP----------RF-AEFTADGKELWVSSE-IGGTVSVIDVAT 188 (300)
T ss_pred CCCCEEEEEecC---CCeEEEEeCCCCeEEEEEEcCCCc----------cE-EEECCCCCEEEEEcC-CCCEEEEEEcCc
Confidence 356665555443 2246667877654422 2211111 11 112335654444332 456899998866
Q ss_pred CeeeEEEEecCC---Ccc--eeeEEEeeCCeEEEE--EeCCeEEEEECCCCeEEE
Q 041235 295 GFWTKHLSFGPF---MEA--YQPLGFWRNGEFFLE--SSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 295 ~~W~~~~~i~~~---~~~--~~~~~~~~~~~i~~~--~~~~~l~~yd~~t~~~~~ 342 (362)
..-......... ... ...+.+..++..+++ ..+..+..||+++++...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 322111111110 011 123445567776443 235679999999877654
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=39.03 E-value=1.9e+02 Score=27.91 Aligned_cols=102 Identities=11% Similarity=0.124 Sum_probs=55.6
Q ss_pred cEEEEEECCCc--eeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcc
Q 041235 232 ASILSFSMSDE--VFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEA 309 (362)
Q Consensus 232 ~~il~fD~~~~--~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~ 309 (362)
.+|-+.|+..- .+-.-+++.. +...........-+|+-.++..+ ..++.||.|...+=.....+.-.-..
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl------~rdnyiRSckL~pdgrtLivGGe--astlsiWDLAapTprikaeltssapa 511 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCL------NRDNYIRSCKLLPDGRTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPA 511 (705)
T ss_pred CeEEEeeccCCCCCCcccccccc------CcccceeeeEecCCCceEEeccc--cceeeeeeccCCCcchhhhcCCcchh
Confidence 36777776643 1111133322 22333444555667877777764 88999999976211111111100011
Q ss_pred eeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 310 YQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 310 ~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
-.-+++..+.++.|.. .++++.+||+.++++.
T Consensus 512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred hhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 2234445677776654 5888999999988753
No 112
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.96 E-value=4.5e+02 Score=26.96 Aligned_cols=123 Identities=10% Similarity=0.183 Sum_probs=67.7
Q ss_pred CccEEECceEEEEeecCC-------CCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEc--Ce-EEEEEe
Q 041235 211 TDNVYLNGYCYWVASGHN-------SYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYD--GS-LSLLYS 280 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~-------~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~--g~-L~l~~~ 280 (362)
...++.-+..||+..... .....+++-+..++.|....+|...-++... .+.....-+..| |. |++-+.
T Consensus 249 ~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS-is~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 249 HKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS-ISDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred cceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee-cccceeeEEEecccCCEEEEcCC
Confidence 445777888888875531 1256899999999999999999765211110 111111112222 33 333332
Q ss_pred cCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCC
Q 041235 281 EESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYE 338 (362)
Q Consensus 281 ~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~ 338 (362)
....+-||+++.++...+-+=. .....-+...+||.++.-. .++++-+||...+
T Consensus 328 --klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 328 --KLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred --ccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 4668999988764433332210 0112233344566665544 3677777777654
No 113
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=38.93 E-value=66 Score=23.65 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=30.0
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEE
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLIL 167 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 167 (362)
-+++..+|.+++|...- . . ...+.+..|+..+.|.++...
T Consensus 9 a~v~~~~~~~~~W~~~~--~---~------~g~v~~~~d~~~~~y~i~~~~ 48 (104)
T cd00837 9 AQVYTADPSTGKWVPAS--G---G------TGAVSLVKDSTRNTYRIRGVD 48 (104)
T ss_pred EEEEEECCCCCceEECC--C---C------eEEEEEEEECCCCEEEEEEEe
Confidence 36889999999998532 1 1 126778889988899988874
No 114
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=38.24 E-value=3.4e+02 Score=25.39 Aligned_cols=113 Identities=9% Similarity=0.001 Sum_probs=68.7
Q ss_pred EECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecC-CCCEEEEEEEc
Q 041235 215 YLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEE-SGHSFSLWMMK 293 (362)
Q Consensus 215 ~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~-~~~~~~iW~l~ 293 (362)
..||.+...+..+ -.|-++|+++++--.-- +... .......+...+|++.-..+.. ..+.+.+|.-+
T Consensus 182 n~dGs~l~TtckD----KkvRv~dpr~~~~v~e~-~~he-------G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 182 NRDGSLLCTTCKD----KKVRVIDPRRGTVVSEG-VAHE-------GAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred ccCCceeeeeccc----ceeEEEcCCCCcEeeec-cccc-------CCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 3467777666654 38999999998774433 2211 1223345566677754444433 67889999887
Q ss_pred C-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCe
Q 041235 294 G-GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEE 339 (362)
Q Consensus 294 ~-~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~ 339 (362)
+ ++=.....++..+++..|+.-...+-+|+++. +..+=+|......
T Consensus 250 nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 250 NLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 7 22244556666666666766544455666654 5666677776655
No 115
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=38.18 E-value=1.5e+02 Score=26.15 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEI 340 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~ 340 (362)
+|.||.... .+.++-+|.|++ +. .+.++. ......+++.++.-.+....+..+-.+|++++..
T Consensus 203 DGslcasGg--kdg~~~LwdL~~~k~---lysl~a-~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 203 DGSLCASGG--KDGEAMLWDLNEGKN---LYSLEA-FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred CCCEEecCC--CCceEEEEEccCCce---eEeccC-CCeEeeEEecCCceeEeeccCCceEEEeccchhh
No 116
>PTZ00420 coronin; Provisional
Probab=37.55 E-value=4.3e+02 Score=26.33 Aligned_cols=117 Identities=13% Similarity=0.046 Sum_probs=60.0
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEEE--EcCeEEEEEecC--CCCEEEEEE
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIGI--YDGSLSLLYSEE--SGHSFSLWM 291 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~~--~~g~L~l~~~~~--~~~~~~iW~ 291 (362)
+|.+...+..+ ..|..||+.++.-. .+...... .......+.. .++...+.+... ..+.+.||.
T Consensus 178 dG~lLat~s~D----~~IrIwD~Rsg~~i~tl~gH~g~-------~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWD 246 (568)
T PTZ00420 178 KGNLLSGTCVG----KHMHIIDPRKQEIASSFHIHDGG-------KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWD 246 (568)
T ss_pred CCCEEEEEecC----CEEEEEECCCCcEEEEEecccCC-------ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEE
Confidence 56655444322 27999999886542 23222111 0001111111 244444444432 235899999
Q ss_pred EcC-CeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEEEE
Q 041235 292 MKG-GFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 292 l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~i~ 344 (362)
+.. ..=.....++.......|+.-..+|.+|+.. .+..+.+|+..++.+..+.
T Consensus 247 lr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 247 LKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred CCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 886 3322223333222222344433346677665 4788999999888766553
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=37.36 E-value=2.7e+02 Score=23.96 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=64.1
Q ss_pred CceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
+|...+.+... ...|..||+.+.+. ..+....... .........+ ..-+|+..++... ....+.+|.++
T Consensus 167 dg~~l~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~- 237 (300)
T TIGR03866 167 DGKELWVSSEI---GGTVSVIDVATRKVIKKITFEIPGV----HPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAK- 237 (300)
T ss_pred CCCEEEEEcCC---CCEEEEEEcCcceeeeeeeeccccc----ccccCCccceEECCCCCEEEEEcC-CCCeEEEEECC-
Confidence 56544444322 23788999987654 3333211000 0001111122 3345665444332 34578888774
Q ss_pred CeeeEEEEecCCCcceeeEEEeeCCeEEEEE--eCCeEEEEECCCCeE-EEEEEecc
Q 041235 295 GFWTKHLSFGPFMEAYQPLGFWRNGEFFLES--SDNRLVLYDSRYEEI-RDLEITGI 348 (362)
Q Consensus 295 ~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~--~~~~l~~yd~~t~~~-~~i~~~~~ 348 (362)
.|+.+..+.. ......+.+..+|+.++.. .++.+.+||+++++. +.+++.+.
T Consensus 238 -~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 292 (300)
T TIGR03866 238 -TYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL 292 (300)
T ss_pred -CCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc
Confidence 3444443322 1223445666788776654 378899999999885 66766433
No 118
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=36.08 E-value=3.7e+02 Score=27.49 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=55.1
Q ss_pred EEEEEECCCceeeE--ecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcce
Q 041235 233 SILSFSMSDEVFEE--IKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAY 310 (362)
Q Consensus 233 ~il~fD~~~~~~~~--i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~ 310 (362)
.|..+|+.++.-.. +..-.. .....+..+++.+.++.++ .+..++||.+..+ +...++.......
T Consensus 44 ~vn~WdlRtge~~~~l~~~~~k----------~evt~l~~~~d~l~lAVGY-aDGsVqif~~~s~--~~~~tfngHK~AV 110 (888)
T KOG0306|consen 44 QVNIWDLRTGEIEKKLILLKKK----------AEVTCLRSSDDILLLAVGY-ADGSVQIFSLESE--EILITFNGHKAAV 110 (888)
T ss_pred cEeEEeeecchhhhhhhhhccc----------ceEEEeeccCCcceEEEEe-cCceEEeeccCCC--ceeeeecccccce
Confidence 68899999875432 121111 1334677778887777665 7889999998753 2333333222233
Q ss_pred eeEEEeeCCeEEEEEe-CCeEEEEECCC
Q 041235 311 QPLGFWRNGEFFLESS-DNRLVLYDSRY 337 (362)
Q Consensus 311 ~~~~~~~~~~i~~~~~-~~~l~~yd~~t 337 (362)
.-+-+...|..+..+. +..+++||+-.
T Consensus 111 t~l~fd~~G~rlaSGskDt~IIvwDlV~ 138 (888)
T KOG0306|consen 111 TTLKFDKIGTRLASGSKDTDIIVWDLVG 138 (888)
T ss_pred EEEEEcccCceEeecCCCccEEEEEecc
Confidence 3344455566666543 77788888754
No 119
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=36.08 E-value=1.2e+02 Score=26.39 Aligned_cols=84 Identities=11% Similarity=0.118 Sum_probs=50.5
Q ss_pred EEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecC-CCCEEEEEEEcC----CeeeEEEE-ecCC
Q 041235 233 SILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEE-SGHSFSLWMMKG----GFWTKHLS-FGPF 306 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~-~~~~~~iW~l~~----~~W~~~~~-i~~~ 306 (362)
.-..||+.+++++.+..+... ++......-+|+|.....+. ....+++..-.+ ..|.+... |.-.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~---------FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~ 117 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDT---------FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG 117 (243)
T ss_pred EEEEEecCCCcEEeccCCCCC---------cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC
Confidence 355789999999988776443 12223344578888777654 344566555433 57877653 3322
Q ss_pred CcceeeEEEeeCCeEEEEEe
Q 041235 307 MEAYQPLGFWRNGEFFLESS 326 (362)
Q Consensus 307 ~~~~~~~~~~~~~~i~~~~~ 326 (362)
.++-......+|+++++..
T Consensus 118 -RWYpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 118 -RWYPTATTLPDGRVLIVGG 136 (243)
T ss_pred -CccccceECCCCCEEEEeC
Confidence 3344444446888877754
No 120
>PLN00181 protein SPA1-RELATED; Provisional
Probab=35.65 E-value=5.2e+02 Score=26.80 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=52.8
Q ss_pred cEEEEEECCCcee--eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC----CeeeEEEEecC
Q 041235 232 ASILSFSMSDEVF--EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG----GFWTKHLSFGP 305 (362)
Q Consensus 232 ~~il~fD~~~~~~--~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~----~~W~~~~~i~~ 305 (362)
..|..||+.+..- ..+. . .......+.-.++...+... .+..+.||.+.. ..|..+..+..
T Consensus 640 g~I~iwD~~~~~~~~~~~~--~---------h~~~V~~v~f~~~~~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMI--G---------HSKTVSYVRFVDSSTLVSSS--TDNTLKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred CeEEEEECCCCCccceEec--C---------CCCCEEEEEEeCCCEEEEEE--CCCEEEEEeCCCCccccCCcceEEEcC
Confidence 3889999876431 1121 1 11112233334666544444 477899999864 24656655543
Q ss_pred CCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCC
Q 041235 306 FMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYE 338 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~ 338 (362)
.......+++..++.++... .++.+..||..+.
T Consensus 707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 33333445555566666554 4788889987654
No 121
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.56 E-value=3e+02 Score=23.91 Aligned_cols=180 Identities=17% Similarity=0.240 Sum_probs=91.9
Q ss_pred cccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEE
Q 041235 108 DGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAI 185 (362)
Q Consensus 108 ~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 185 (362)
+|=-|+.. ++.+-+|||..+....-=..... . ..-..+.+|.+ |+- ...++ ..+.+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~---E----VlD~~~s~Dns----kf~----s~GgD-------k~v~v 85 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH---E----VLDAALSSDNS----KFA----SCGGD-------KAVQV 85 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCCc---e----eeecccccccc----ccc----cCCCC-------ceEEE
Confidence 44445544 56889999999876643221110 0 00122333332 111 11122 57778
Q ss_pred EEcCCC----CceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCC
Q 041235 186 YNFSTN----SWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDES 261 (362)
Q Consensus 186 yss~~~----~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~ 261 (362)
++-.++ .|+....... ...+ ....+|.+.|.+ .+.+-++|.+++.++.|+.=.... .
T Consensus 86 wDV~TGkv~Rr~rgH~aqVN-tV~f--NeesSVv~Sgsf----------D~s~r~wDCRS~s~ePiQildea~------D 146 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVN-TVRF--NEESSVVASGSF----------DSSVRLWDCRSRSFEPIQILDEAK------D 146 (307)
T ss_pred EEcccCeeeeecccccceee-EEEe--cCcceEEEeccc----------cceeEEEEcccCCCCccchhhhhc------C
Confidence 887775 5554333110 0011 344556665554 458999999999998887654431 1
Q ss_pred CCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceee---EEEeeCCeEEEEEe-CCeEEEEECCC
Q 041235 262 EMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQP---LGFWRNGEFFLESS-DNRLVLYDSRY 337 (362)
Q Consensus 262 ~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~---~~~~~~~~i~~~~~-~~~l~~yd~~t 337 (362)
. . .-+...+...+... .+.++..+-+..+ ++. .+++..| +++.+++...+... +..+-..|.+|
T Consensus 147 ~--V-~Si~v~~heIvaGS--~DGtvRtydiR~G------~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 147 G--V-SSIDVAEHEIVAGS--VDGTVRTYDIRKG------TLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred c--e-eEEEecccEEEeec--cCCcEEEEEeecc------eee-hhhcCCcceeEEecCCCCEEEEeeccceeeecccch
Confidence 1 1 11334454444444 3556666655431 111 2333443 44556666655543 66677777777
Q ss_pred CeE
Q 041235 338 EEI 340 (362)
Q Consensus 338 ~~~ 340 (362)
+++
T Consensus 215 Gkl 217 (307)
T KOG0316|consen 215 GKL 217 (307)
T ss_pred hHH
Confidence 665
No 122
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=35.47 E-value=1.3e+02 Score=25.53 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=46.5
Q ss_pred EEEEEcCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEE-EeCCeEEEEECCC-CeEEE
Q 041235 267 RIGIYDGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLE-SSDNRLVLYDSRY-EEIRD 342 (362)
Q Consensus 267 ~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~yd~~t-~~~~~ 342 (362)
.|.-.+|++.....-.....+.+|.|.. ..|+.... +...+...+... .+.++.+ ..++..+.||..| +++.+
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~-gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKL-GDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecC--Cccccccceeec-cceEEEEEeccceeEEEChHHhhhhcc
Confidence 4566778888877777889999999985 66665543 222222222222 2233333 3467777888776 33445
Q ss_pred EEEecc
Q 041235 343 LEITGI 348 (362)
Q Consensus 343 i~~~~~ 348 (362)
+...|+
T Consensus 127 ~~y~Ge 132 (262)
T COG3823 127 FSYEGE 132 (262)
T ss_pred cccCCc
Confidence 544443
No 123
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=34.96 E-value=85 Score=17.47 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=24.6
Q ss_pred eeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEE
Q 041235 297 WTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYD 334 (362)
Q Consensus 297 W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd 334 (362)
|+.+..+........-+.+..++..++... ++.+.+||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 566666665545556666666777666544 67787776
No 124
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.44 E-value=1.3e+02 Score=31.30 Aligned_cols=70 Identities=19% Similarity=0.397 Sum_probs=43.6
Q ss_pred EEEcCeEEEEEecCCCCEEEEEEEcC-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCe
Q 041235 269 GIYDGSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEE 339 (362)
Q Consensus 269 ~~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~ 339 (362)
+...+.|=++....+++.+.+|+|.+ +.|+.----+....+ ..+-++++.++++... ++.+=+||++.++
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV-ssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV-SSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCc-ceEEecCccceeEecCCCccEEEEeccccc
Confidence 33445444444444789999999999 889875433332222 2333445667777765 5668899998654
No 125
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=34.35 E-value=4.2e+02 Score=25.34 Aligned_cols=107 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCe
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGF 296 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~ 296 (362)
+|. |-++... ...|-.+|+....-....+.... .........-.|.+.+.+. .+.++.||.++.
T Consensus 214 d~~-~l~s~s~---D~tiriwd~~~~~~~~~~l~gH~--------~~v~~~~f~p~g~~i~Sgs--~D~tvriWd~~~-- 277 (456)
T KOG0266|consen 214 DGS-YLLSGSD---DKTLRIWDLKDDGRNLKTLKGHS--------TYVTSVAFSPDGNLLVSGS--DDGTVRIWDVRT-- 277 (456)
T ss_pred CCc-EEEEecC---CceEEEeeccCCCeEEEEecCCC--------CceEEEEecCCCCEEEEec--CCCcEEEEeccC--
Q ss_pred eeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCe
Q 041235 297 WTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEE 339 (362)
Q Consensus 297 W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~ 339 (362)
=+.+..+.....-...+++..++.++.... ++.+.+||..++.
T Consensus 278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 278 GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
No 126
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=34.12 E-value=3.7e+02 Score=24.63 Aligned_cols=102 Identities=11% Similarity=0.127 Sum_probs=55.5
Q ss_pred EEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCC---CC-----EEEEEEEc------C--Ce
Q 041235 233 SILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEES---GH-----SFSLWMMK------G--GF 296 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~---~~-----~~~iW~l~------~--~~ 296 (362)
..+.||..+......|..... . .....+..+|+|++...... .. .+++-... . ..
T Consensus 87 ~t~vyDt~t~av~~~P~l~~p--------k-~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~ 157 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSP--------K-RCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEES 157 (342)
T ss_pred CeEEEECCCCeEeccCCCCCC--------C-cceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCc
Confidence 588999888877744332111 1 11233445888888876531 11 55555333 1 33
Q ss_pred eeEEEEec--CCCcc-------eeeEEEeeCCeEEEEEeCC--eEEEEECCCCeEEEEE
Q 041235 297 WTKHLSFG--PFMEA-------YQPLGFWRNGEFFLESSDN--RLVLYDSRYEEIRDLE 344 (362)
Q Consensus 297 W~~~~~i~--~~~~~-------~~~~~~~~~~~i~~~~~~~--~l~~yd~~t~~~~~i~ 344 (362)
|.-.. ++ |.... ...-++..+..|++..... .-+.||.++.+|+++.
T Consensus 158 w~W~~-LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 158 WSWRS-LPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred ceEEc-CCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 43333 33 22110 2233444234456655555 7999999999999764
No 127
>PLN02772 guanylate kinase
Probab=34.00 E-value=3.6e+02 Score=25.39 Aligned_cols=60 Identities=7% Similarity=0.036 Sum_probs=40.4
Q ss_pred eEEEEEcCeEEEEEecCCC--CEEEEEEEcC--CeeeEEEEecC--CCcceeeEEEeeCCeEEEEE
Q 041235 266 WRIGIYDGSLSLLYSEESG--HSFSLWMMKG--GFWTKHLSFGP--FMEAYQPLGFWRNGEFFLES 325 (362)
Q Consensus 266 ~~l~~~~g~L~l~~~~~~~--~~~~iW~l~~--~~W~~~~~i~~--~~~~~~~~~~~~~~~i~~~~ 325 (362)
...++.+++++++....+. ....+|.++. ..|+.-...+. ........++.+++.|+++.
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 3568889999999865432 5789999988 88988765552 22234455555566666654
No 128
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=33.99 E-value=4.4e+02 Score=25.42 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=25.7
Q ss_pred eCCeEEEEEeCCeEEEEECCCCeEEEEEEe
Q 041235 317 RNGEFFLESSDNRLVLYDSRYEEIRDLEIT 346 (362)
Q Consensus 317 ~~~~i~~~~~~~~l~~yd~~t~~~~~i~~~ 346 (362)
.+|+-++.+..+.++.|||+|..++++.|.
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecC
Confidence 367777777889999999999999998874
No 129
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.58 E-value=3.9e+02 Score=24.71 Aligned_cols=58 Identities=14% Similarity=0.292 Sum_probs=41.6
Q ss_pred CCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEE
Q 041235 283 SGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 283 ~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~ 342 (362)
.++++.+|.+.-. ..+.++.-.+...+.+.+..+|+.++.- +++.+-+||+++++..+
T Consensus 312 rDktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 312 RDKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred ccceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 5889999988653 2344454445566777777789887764 57779999999987644
No 130
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=33.38 E-value=3.9e+02 Score=24.59 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=45.9
Q ss_pred CCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEE
Q 041235 210 STDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSL 289 (362)
Q Consensus 210 ~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~i 289 (362)
....|-++.+ |-.+..+ ...|-+.|+.|.+|-.+---.. .-.....++|+|.+... .+.++.+
T Consensus 322 aVNvVdfd~k-yIVsASg---DRTikvW~~st~efvRtl~gHk-----------RGIAClQYr~rlvVSGS--SDntIRl 384 (499)
T KOG0281|consen 322 AVNVVDFDDK-YIVSASG---DRTIKVWSTSTCEFVRTLNGHK-----------RGIACLQYRDRLVVSGS--SDNTIRL 384 (499)
T ss_pred heeeeccccc-eEEEecC---CceEEEEeccceeeehhhhccc-----------ccceehhccCeEEEecC--CCceEEE
Confidence 4456666777 5555544 5589999999988854422111 12345778999887776 5899999
Q ss_pred EEEcC
Q 041235 290 WMMKG 294 (362)
Q Consensus 290 W~l~~ 294 (362)
|...-
T Consensus 385 wdi~~ 389 (499)
T KOG0281|consen 385 WDIEC 389 (499)
T ss_pred Eeccc
Confidence 98755
No 131
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=33.35 E-value=66 Score=30.97 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=64.0
Q ss_pred Cceeccc---CcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEe----cCCCCCCCCCCCCCCCc
Q 041235 192 SWRDLEG---LFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEI----KGPNFPQITTYDESEMT 264 (362)
Q Consensus 192 ~W~~~~~---~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i----~~P~~~~~~~~~~~~~~ 264 (362)
.||.+.. +.+.+. ..+.+|.+.-.+--+++..++-...+.+||..+++|..- ++|+.+
T Consensus 18 rWrrV~~~tGPvPrpR----HGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgc----------- 82 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPR----HGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGC----------- 82 (830)
T ss_pred ceEEEecccCCCCCcc----ccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCch-----------
Confidence 6887765 333222 235677777776666654433355788999999999742 456554
Q ss_pred eeEEEEEcCe-EEEEEe--cCCCCEEEEEEEcC--CeeeEEEEecCCC------cceeeEEEeeCCeEEE
Q 041235 265 SWRIGIYDGS-LSLLYS--EESGHSFSLWMMKG--GFWTKHLSFGPFM------EAYQPLGFWRNGEFFL 323 (362)
Q Consensus 265 ~~~l~~~~g~-L~l~~~--~~~~~~~~iW~l~~--~~W~~~~~i~~~~------~~~~~~~~~~~~~i~~ 323 (362)
...-++++|. |.++.. ++..-+=++++|+. .+|.++..-.+.+ .+...+.+.++.+.+|
T Consensus 83 AA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlF 152 (830)
T KOG4152|consen 83 AAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLF 152 (830)
T ss_pred hhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEe
Confidence 1122455554 444432 12344556777776 4555554332222 2345555544333333
No 132
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=31.84 E-value=3.4e+02 Score=23.46 Aligned_cols=126 Identities=16% Similarity=0.231 Sum_probs=71.4
Q ss_pred EEEEEcCC-CCceecccCcccceeecCCCCccE--EECceEEEEeecCCCCccEEEEEECC-CceeeEe---cCCCCCCC
Q 041235 183 VAIYNFST-NSWRDLEGLFQMGHYYGSDSTDNV--YLNGYCYWVASGHNSYNASILSFSMS-DEVFEEI---KGPNFPQI 255 (362)
Q Consensus 183 ~~vyss~~-~~W~~~~~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~il~fD~~-~~~~~~i---~~P~~~~~ 255 (362)
..+|+.+. .+|+............ ...+ .-+|.+|.+.... ......++.-.. .++|+.. .+|...
T Consensus 136 ~~~~S~D~G~tW~~~~~~~~~~~~~----e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~D~G~TWs~~~~~~~~~~~-- 208 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIPDGQGEC----EPSIVELPDGRLLAVFRTE-GNDDIYISRSTDGGRTWSPPQPTNLPNPN-- 208 (275)
T ss_dssp EEEEESSTTSSEEEEEECECSEEEE----EEEEEEETTSEEEEEEEEC-SSTEEEEEEESSTTSS-EEEEEEECSSCC--
T ss_pred EEEEeCCCCceeeccccccccCCcc----eeEEEECCCCcEEEEEEcc-CCCcEEEEEECCCCCcCCCceecccCccc--
Confidence 33455554 4798876632211111 2222 2478888887663 112344555444 4578753 455433
Q ss_pred CCCCCCCCceeEEEE-EcCeEEEEEecC-CCCEEEEEEEcC--CeeeEEEEecCCC---cceeeEEEeeCCeEEE
Q 041235 256 TTYDESEMTSWRIGI-YDGSLSLLYSEE-SGHSFSLWMMKG--GFWTKHLSFGPFM---EAYQPLGFWRNGEFFL 323 (362)
Q Consensus 256 ~~~~~~~~~~~~l~~-~~g~L~l~~~~~-~~~~~~iW~l~~--~~W~~~~~i~~~~---~~~~~~~~~~~~~i~~ 323 (362)
....++. .+|++.++.... ....+.|+.-.+ ..|.....|.... ..+.-+...++|.|.+
T Consensus 209 --------~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 209 --------SSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp --------EEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred --------CCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 2334444 367888888742 467788888877 8999988887533 3344455556666643
No 133
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=31.71 E-value=4.6e+02 Score=24.92 Aligned_cols=61 Identities=16% Similarity=0.380 Sum_probs=41.3
Q ss_pred CCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCC-CeEEEEEE
Q 041235 283 SGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRY-EEIRDLEI 345 (362)
Q Consensus 283 ~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t-~~~~~i~~ 345 (362)
.+..+.||.++... .+.+++....-..-+.+.++|-.+.... +..+..||++. +.++.+.+
T Consensus 367 ~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l 429 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL 429 (506)
T ss_pred CCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence 67899999998833 5566766555566777777777665544 55599999974 33444443
No 134
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.41 E-value=3.7e+02 Score=23.76 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=25.3
Q ss_pred EEcCCCCceeccc-CcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCce
Q 041235 186 YNFSTNSWRDLEG-LFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEV 243 (362)
Q Consensus 186 yss~~~~W~~~~~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~ 243 (362)
+..++..|..+.. ... .......-.|.+|.-+.++ ...+.|+.+..
T Consensus 80 ~~tGs~~w~f~~~~~vk-------~~a~~d~~~glIycgshd~-----~~yalD~~~~~ 126 (354)
T KOG4649|consen 80 VKTGSQIWNFVILETVK-------VRAQCDFDGGLIYCGSHDG-----NFYALDPKTYG 126 (354)
T ss_pred ecchhheeeeeehhhhc-------cceEEcCCCceEEEecCCC-----cEEEecccccc
Confidence 4444568986654 211 0112233456677666665 67788877643
No 135
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=30.98 E-value=7.3e+02 Score=27.05 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=40.4
Q ss_pred EEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcCe-EEEEEecCCCCEEEEEEEcCCeeeEEEEecC
Q 041235 233 SILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDGS-LSLLYSEESGHSFSLWMMKGGFWTKHLSFGP 305 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~-L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~ 305 (362)
.|+-|.-....-..+.+|...+ .. ..-.| -..++. |+++...-....+.+|..++..|-.+-.+..
T Consensus 267 ~IvffErNGL~hg~f~l~~p~d-----e~--~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~ 334 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPFPLD-----EK--EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQF 334 (1265)
T ss_pred cEEEEecCCccccccccCCccc-----cc--chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEec
Confidence 6888887766666665555441 11 02233 334455 4444444355669999999999988877653
No 136
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=30.92 E-value=1.7e+02 Score=25.19 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=36.0
Q ss_pred ccccEEEe-ecCcEEEEeccccceecc--cCCCCCCCCCCccceeeeEEeecCCCCCeEEEE
Q 041235 107 CDGIFCFF-ENENIYLWNVSMNEYRIV--TKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVL 165 (362)
Q Consensus 107 ~~GLl~~~-~~~~~~v~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~ 165 (362)
.+|.|..- ...++|..||.|+.-..+ .+........ .++|-|+|..++-+||.
T Consensus 37 a~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~------~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 37 ANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGT------AFGVDFNPAADRLRVVS 92 (236)
T ss_pred CCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCc------eEEEecCcccCcEEEEc
Confidence 35555443 467899999999997766 3333222112 78888899988888885
No 137
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=30.37 E-value=1.1e+02 Score=22.66 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=28.6
Q ss_pred cEEEEeccccc-eecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEE
Q 041235 118 NIYLWNVSMNE-YRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLIL 167 (362)
Q Consensus 118 ~~~v~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 167 (362)
+++..+|-+++ |... .. ...+.+..|...+.|+|..+.
T Consensus 17 ~v~~~~p~~~~~W~~~-~~-----------~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 17 QVYQADPDTKRQWSPV-KG-----------TGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEETTTSESEEES-SS-----------EEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCcEeeC-Ce-----------EEEEEEEEECCCCEEEEEEEE
Confidence 68999999988 9866 11 126678888888889888774
No 138
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=29.48 E-value=4e+02 Score=23.60 Aligned_cols=76 Identities=13% Similarity=0.303 Sum_probs=0.0
Q ss_pred CeEEEEEecCCCCEEEEEEEcC-CeeeEEEEec-CCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEEEEE-Eecc
Q 041235 273 GSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFG-PFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIRDLE-ITGI 348 (362)
Q Consensus 273 g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~-~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~~i~-~~~~ 348 (362)
|.+...+. .++.+.||.+.. .+|+.+..++ -.+.-.+.++..+.|.++-... +..+..|--+.++++.+. +.|.
T Consensus 27 g~ilAscg--~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGH 104 (312)
T KOG0645|consen 27 GVILASCG--TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGH 104 (312)
T ss_pred ceEEEeec--CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecc
Q ss_pred cc
Q 041235 349 WF 350 (362)
Q Consensus 349 ~~ 350 (362)
.+
T Consensus 105 En 106 (312)
T KOG0645|consen 105 EN 106 (312)
T ss_pred cc
No 139
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=29.45 E-value=2.6e+02 Score=25.99 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=31.3
Q ss_pred CCCEEEEEEEcC----------CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEE
Q 041235 283 SGHSFSLWMMKG----------GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIR 341 (362)
Q Consensus 283 ~~~~~~iW~l~~----------~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~ 341 (362)
.+.++++|.++. ..|..-.... ++|+.+-... ++.+..||+++++-.
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvaws------------PDgk~iASG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWS------------PDGKKIASGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEEC------------CCcchhhccccCCeEEEecCCCCCcc
Confidence 678999998865 3454444443 5677666543 777888888876543
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=29.12 E-value=2.1e+02 Score=27.57 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=38.8
Q ss_pred CCCEEEEEEEcC----CeeeEEEEecCCCcceeeEEEeeCCeEEEE--EeCCeEEEEECCCCeE
Q 041235 283 SGHSFSLWMMKG----GFWTKHLSFGPFMEAYQPLGFWRNGEFFLE--SSDNRLVLYDSRYEEI 340 (362)
Q Consensus 283 ~~~~~~iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~--~~~~~l~~yd~~t~~~ 340 (362)
....+.+|.... ..|.+.+.-+ -+.+|+...++.+++ ..+.++..||...++.
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~HsAP-----~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHSAP-----CRGICFSPSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhccCC-----cCcceecCCccceEEEecccceEEEeecccccc
Confidence 477899999877 6788888765 355677665554443 3589999999987765
No 141
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=27.78 E-value=34 Score=29.87 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHHccCC-ccccccccccccchhhhcC
Q 041235 3 GYRELSHDLLVETLSRLP-VKSLMRFRCVSKSWFSLLK 39 (362)
Q Consensus 3 ~~~~LP~dll~~IL~rLp-~~~l~r~r~VcK~W~~li~ 39 (362)
++.+||.+++.+||.||| -.+|..+..|--.-..++.
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 456899999999999998 6788877777544444444
No 142
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=27.74 E-value=1.2e+02 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=19.3
Q ss_pred EEEEeCCeEEEEECCCCeEEEEEEecc
Q 041235 322 FLESSDNRLVLYDSRYEEIRDLEITGI 348 (362)
Q Consensus 322 ~~~~~~~~l~~yd~~t~~~~~i~~~~~ 348 (362)
+.....-.++-||.++++|++..+.|.
T Consensus 23 l~~a~~v~vY~f~~~~~~W~K~~iEG~ 49 (122)
T PF06058_consen 23 LDTASHVVVYKFDHETNEWEKTDIEGT 49 (122)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred HhhCCeEEEEeecCCCCcEeecCcEee
Confidence 333345567788889999998887663
No 143
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=27.11 E-value=3.7e+02 Score=22.37 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=15.7
Q ss_pred CCeEEEEECCCCeEEEEE
Q 041235 327 DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 327 ~~~l~~yd~~t~~~~~i~ 344 (362)
++.|+.||+.|+..+.+.
T Consensus 139 GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 139 GGNLYKYNLNTGNLTELY 156 (200)
T ss_pred CCeEEEEEccCCceeEee
Confidence 688999999999988765
No 144
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=27.07 E-value=3.6e+02 Score=22.30 Aligned_cols=93 Identities=18% Similarity=0.236 Sum_probs=49.3
Q ss_pred EEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEE-EEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcce
Q 041235 233 SILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIG-IYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAY 310 (362)
Q Consensus 233 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~ 310 (362)
.+..||+.+..- ..+..... ....+. .-+|+..+++. ....+.+|.+... ..+..+.......
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~--~~~~i~i~d~~~~--~~~~~~~~~~~~i 222 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTG-----------EVNSVAFSPDGEKLLSSS--SDGTIKLWDLSTG--KCLGTLRGHENGV 222 (289)
T ss_pred cEEEEEccccccceeEecCcc-----------ccceEEECCCcCEEEEec--CCCcEEEEECCCC--ceecchhhcCCce
Confidence 788899875433 23332111 111222 23443444443 2678999988652 2222221112223
Q ss_pred eeEEEeeCCeEEEEEe-CCeEEEEECCCCeE
Q 041235 311 QPLGFWRNGEFFLESS-DNRLVLYDSRYEEI 340 (362)
Q Consensus 311 ~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~ 340 (362)
..+.+..++.+++... ++.+..||.++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred EEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence 3344555567777666 88999999987654
No 145
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=27.05 E-value=51 Score=17.14 Aligned_cols=16 Identities=19% Similarity=0.582 Sum_probs=13.0
Q ss_pred EEEeccccceecccCC
Q 041235 120 YLWNVSMNEYRIVTKR 135 (362)
Q Consensus 120 ~v~NP~T~~~~~LP~~ 135 (362)
.|||.+++.|+..++.
T Consensus 7 ~iwn~~~~~~vvvsE~ 22 (24)
T PF13018_consen 7 LIWNKARGTWVVVSEL 22 (24)
T ss_pred EEEECCCCeEEEEeee
Confidence 7899999999877653
No 146
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=26.73 E-value=3e+02 Score=27.01 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=57.0
Q ss_pred ccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEE
Q 041235 107 CDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVA 184 (362)
Q Consensus 107 ~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 184 (362)
.+|-+|.+. +.++.||||..++.+.+=... .. ...+..-|.|-+++=.|+... ++ ..+.
T Consensus 60 ~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--Ht------aNIFsvKFvP~tnnriv~sgA----gD-------k~i~ 120 (758)
T KOG1310|consen 60 ADGELLASGSDDTRLIVWDPFEYKLLHSISTG--HT------ANIFSVKFVPYTNNRIVLSGA----GD-------KLIK 120 (758)
T ss_pred CCCCEEeecCCcceEEeecchhcceeeeeecc--cc------cceeEEeeeccCCCeEEEecc----Cc-------ceEE
Confidence 467777765 568999999955443321111 11 114555566766665555432 12 4677
Q ss_pred EEEcCCCCceecccC--cc---cceeecCCCCccEEECc-eEEEEeecCCCCccEEEEEECCC
Q 041235 185 IYNFSTNSWRDLEGL--FQ---MGHYYGSDSTDNVYLNG-YCYWVASGHNSYNASILSFSMSD 241 (362)
Q Consensus 185 vyss~~~~W~~~~~~--~~---~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~il~fD~~~ 241 (362)
+|+....+=+..+.. .+ +........+-++.-+| ..+|-+.++. .|..||++.
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG----tirQyDiRE 179 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG----TIRQYDIRE 179 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc----ceeeecccC
Confidence 777764222221110 00 11111001111223344 5788877642 789999876
No 147
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=26.71 E-value=6e+02 Score=24.71 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=17.1
Q ss_pred ccEEEEEECCCceeeEecCCCCC
Q 041235 231 NASILSFSMSDEVFEEIKGPNFP 253 (362)
Q Consensus 231 ~~~il~fD~~~~~~~~i~~P~~~ 253 (362)
...|...|-.-.+-+.+++|...
T Consensus 307 DRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 307 DRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred cceEEeccccccccccccCchhc
Confidence 55899999555666778888765
No 148
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.67 E-value=2.3e+02 Score=25.56 Aligned_cols=60 Identities=7% Similarity=0.129 Sum_probs=40.9
Q ss_pred CCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEEEEE
Q 041235 283 SGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 283 ~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~~i~ 344 (362)
+++++.||.|++++ +.+.+|..... ..-+.+...+.|+-+.. ++.+-.||++.+.+-+++
T Consensus 376 DDrTvKvWdLrNMR-splATIRtdS~-~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMR-SPLATIRTDSP-ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred CCceEEEeeecccc-CcceeeecCCc-cceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 68899999998821 24455543222 23345556677877654 667999999999988776
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=26.26 E-value=7.8e+02 Score=25.84 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=0.0
Q ss_pred eEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCC
Q 041235 150 FGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS 229 (362)
Q Consensus 150 ~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~ 229 (362)
..+.||+.+. |-++|-.. -.+.++.-.... +.|..+.... ....+..+++. |+++...
T Consensus 17 t~i~~d~~ge-fi~tcgsd------------g~ir~~~~~sd~----e~P~ti~~~g--~~v~~ia~~s~-~f~~~s~-- 74 (933)
T KOG1274|consen 17 TLICYDPDGE-FICTCGSD------------GDIRKWKTNSDE----EEPETIDISG--ELVSSIACYSN-HFLTGSE-- 74 (933)
T ss_pred EEEEEcCCCC-EEEEecCC------------CceEEeecCCcc----cCCchhhccC--ceeEEEeeccc-ceEEeec--
Q ss_pred CccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcc
Q 041235 230 YNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEA 309 (362)
Q Consensus 230 ~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~ 309 (362)
+..|.+|.+.+.+...+-.+... ......+.-+|+...+.. ++..+.+-.++|.+=+++.+ ..+.-
T Consensus 75 -~~tv~~y~fps~~~~~iL~Rftl---------p~r~~~v~g~g~~iaags--dD~~vK~~~~~D~s~~~~lr--gh~ap 140 (933)
T KOG1274|consen 75 -QNTVLRYKFPSGEEDTILARFTL---------PIRDLAVSGSGKMIAAGS--DDTAVKLLNLDDSSQEKVLR--GHDAP 140 (933)
T ss_pred -cceEEEeeCCCCCccceeeeeec---------cceEEEEecCCcEEEeec--CceeEEEEeccccchheeec--ccCCc
Q ss_pred eeeEEEeeCCeEEEEEe-CCeEEEEECCCCeE
Q 041235 310 YQPLGFWRNGEFFLESS-DNRLVLYDSRYEEI 340 (362)
Q Consensus 310 ~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~ 340 (362)
..-+....++.++-+.. ++.|.+||++++.+
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchh
No 150
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=26.04 E-value=1.2e+02 Score=20.05 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.7
Q ss_pred CCeEEEEECCCCeEEEEE
Q 041235 327 DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 327 ~~~l~~yd~~t~~~~~i~ 344 (362)
.-+++.||++|++++-+.
T Consensus 40 ~iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 40 QIKIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeCCCCCeEEEEE
Confidence 356899999999988764
No 151
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=26.01 E-value=5.3e+02 Score=23.84 Aligned_cols=102 Identities=8% Similarity=-0.048 Sum_probs=61.9
Q ss_pred EEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEEEcCe-EEEEEecC-------CCCEEEEEEEcCCeeeEEEEe
Q 041235 233 SILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGIYDGS-LSLLYSEE-------SGHSFSLWMMKGGFWTKHLSF 303 (362)
Q Consensus 233 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~-L~l~~~~~-------~~~~~~iW~l~~~~W~~~~~i 303 (362)
.|.++|..+.+. ..|+.-..- .. +..-+|+ |+++.... ....+.||-.+. .+.+..|
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P-----------~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i 93 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLP-----------NP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADI 93 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCC-----------ce-eECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEE
Confidence 789999988665 334432221 11 2444555 55555421 467788887754 4455555
Q ss_pred cCC-C------cceeeEEEeeCCeEEEEEe---CCeEEEEECCCCeE-EEEEEecc
Q 041235 304 GPF-M------EAYQPLGFWRNGEFFLESS---DNRLVLYDSRYEEI-RDLEITGI 348 (362)
Q Consensus 304 ~~~-~------~~~~~~~~~~~~~i~~~~~---~~~l~~yd~~t~~~-~~i~~~~~ 348 (362)
+.. + ....-+.+..+|+.+++.+ +..+-+.|++++++ .+|.+.++
T Consensus 94 ~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~ 149 (352)
T TIGR02658 94 ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC 149 (352)
T ss_pred ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC
Confidence 521 1 1234667778888766543 67899999999887 55877554
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=25.56 E-value=5.2e+02 Score=23.56 Aligned_cols=34 Identities=15% Similarity=0.451 Sum_probs=26.1
Q ss_pred eeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEEEE
Q 041235 311 QPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 311 ~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~i~ 344 (362)
..+++.+++++++.. .+..++.||++.+.+..|.
T Consensus 191 i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~id 225 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDTKICLWDLKGQLLQSID 225 (420)
T ss_pred EEEeecCCceEEEEecCCCcEEEEecCCceeeeec
Confidence 347777777777764 4888999999987777775
No 153
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.14 E-value=2.7e+02 Score=24.83 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=41.0
Q ss_pred CCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-------CCeEEEEECCCCeEEEEEE
Q 041235 283 SGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-------DNRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 283 ~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-------~~~l~~yd~~t~~~~~i~~ 345 (362)
....+++|..+...|.....= ..+....+....++++++... ...+..||.++++|..+.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 366889998888999876532 223333444445666766543 4569999999999987653
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=24.97 E-value=6.2e+02 Score=24.26 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=67.5
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYD 259 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~ 259 (362)
..+++|+..+..-..+..+....-.. ...--|..+|.+-.+.+.. ..|...-..|..| ..+.++..+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~--~e~FeVShd~~fia~~G~~----G~I~lLhakT~eli~s~KieG~v------ 347 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKS--MERFEVSHDSNFIAIAGNN----GHIHLLHAKTKELITSFKIEGVV------ 347 (514)
T ss_pred eEEEEeeccccccccccCCCCcccch--hheeEecCCCCeEEEcccC----ceEEeehhhhhhhhheeeeccEE------
Confidence 46678888777665554422222000 1223455566644444432 2566666666666 455666554
Q ss_pred CCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC----CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEE
Q 041235 260 ESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG----GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYD 334 (362)
Q Consensus 260 ~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd 334 (362)
.......+|+..+++. ....+-+|.+.. ..|.-...+ ....+|...++.++-.+. .+-|=+||
T Consensus 348 -----~~~~fsSdsk~l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 348 -----SDFTFSSDSKELLASG--GTGEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred -----eeEEEecCCcEEEEEc--CCceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEeccCcceEEEec
Confidence 1122336777555554 244666666665 233322222 245566666677555544 34455777
Q ss_pred CC
Q 041235 335 SR 336 (362)
Q Consensus 335 ~~ 336 (362)
.+
T Consensus 416 ~~ 417 (514)
T KOG2055|consen 416 GN 417 (514)
T ss_pred cc
Confidence 54
No 155
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=24.94 E-value=3.8e+02 Score=28.29 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=47.3
Q ss_pred EEEcCeEEEEEecCCCCEEEEEEEcC----------------CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEE
Q 041235 269 GIYDGSLSLLYSEESGHSFSLWMMKG----------------GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLV 331 (362)
Q Consensus 269 ~~~~g~L~l~~~~~~~~~~~iW~l~~----------------~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~ 331 (362)
...+|+...... ++..+.||...+ +.|..+..+.-.+.....++...++.++.... ++.++
T Consensus 77 ~S~dG~~lAsGS--DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 77 FSPDGSYLASGS--DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred ECCCCCeEeecc--CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 345676555555 478899999882 67888888765444445555556666666544 88999
Q ss_pred EEECCCC
Q 041235 332 LYDSRYE 338 (362)
Q Consensus 332 ~yd~~t~ 338 (362)
.||.+|-
T Consensus 155 iwn~~tF 161 (942)
T KOG0973|consen 155 IWNAKTF 161 (942)
T ss_pred EEccccc
Confidence 9999876
No 156
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=24.73 E-value=5.2e+02 Score=23.29 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=49.6
Q ss_pred EEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceee
Q 041235 233 SILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQP 312 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~ 312 (362)
.|..||+.+..-..+.--... ...+.-+-+.=+++... =+.++.+|-..+. ..+...+ .-...
T Consensus 76 ~vr~~Dln~~~~~~igth~~~-----------i~ci~~~~~~~~vIsgs-WD~~ik~wD~R~~--~~~~~~d---~~kkV 138 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEG-----------IRCIEYSYEVGCVISGS-WDKTIKFWDPRNK--VVVGTFD---QGKKV 138 (323)
T ss_pred eEEEEEecCCcceeeccCCCc-----------eEEEEeeccCCeEEEcc-cCccEEEEecccc--ccccccc---cCceE
Confidence 899999988766555322221 12222232333344433 3678888876540 0111111 11244
Q ss_pred EEEeeCCeEEEE-EeCCeEEEEECCCCe
Q 041235 313 LGFWRNGEFFLE-SSDNRLVLYDSRYEE 339 (362)
Q Consensus 313 ~~~~~~~~i~~~-~~~~~l~~yd~~t~~ 339 (362)
.++.-.|+.+++ ..+++++.||+++..
T Consensus 139 y~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 139 YCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred EEEeccCCEEEEeecCceEEEEEccccc
Confidence 555556666665 568999999998654
No 157
>PF15408 PH_7: Pleckstrin homology domain
Probab=23.95 E-value=22 Score=24.96 Aligned_cols=23 Identities=22% Similarity=0.600 Sum_probs=18.7
Q ss_pred cccccccccccchhhhcCCHHHH
Q 041235 22 KSLMRFRCVSKSWFSLLKDPNFI 44 (362)
Q Consensus 22 ~~l~r~r~VcK~W~~li~~p~F~ 44 (362)
+.+...+-|||+|-....+|.|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 44556677999999999999885
No 158
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=22.87 E-value=4.6e+02 Score=23.62 Aligned_cols=63 Identities=25% Similarity=0.333 Sum_probs=37.5
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC---CeeeEEEEecCCCcceeeEEEeeCCeEEE-EEeCCeEEEEECCCCeE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG---GFWTKHLSFGPFMEAYQPLGFWRNGEFFL-ESSDNRLVLYDSRYEEI 340 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~~~l~~yd~~t~~~ 340 (362)
+|...+... .+..+-+|...+ .-|+... .++..--+-...++..++ ...+..+..||.+|++.
T Consensus 58 ~gs~~aSgG--~Dr~I~LWnv~gdceN~~~lkg----HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 58 DGSCFASGG--SDRAIVLWNVYGDCENFWVLKG----HSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CCCeEeecC--CcceEEEEeccccccceeeecc----ccceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 455444444 578999998544 5666551 111111122224565555 45689999999999865
No 159
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=22.77 E-value=4.2e+02 Score=28.89 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=39.9
Q ss_pred CCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCe
Q 041235 283 SGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEE 339 (362)
Q Consensus 283 ~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~ 339 (362)
.-..+..|-... .-|....... .+....+++...+..+++++ .+.+..||++=+.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~--hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLR--HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCcc--ccceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence 466777886554 6787776543 46678888888888887776 5679999998553
No 160
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.46 E-value=2.5e+02 Score=26.23 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred ccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEE--EEEEEcC--CeeeEEEEecC
Q 041235 231 NASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSF--SLWMMKG--GFWTKHLSFGP 305 (362)
Q Consensus 231 ~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~--~iW~l~~--~~W~~~~~i~~ 305 (362)
.+.|+..|+.+++.+.+ .-..-+ .+....=.+..|.+.|....-..+ .||.++. +...+++.-.+
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wl----------gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~ 236 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWL----------GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME 236 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-E----------EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T
T ss_pred CceEEEEECCCCceeEEEecCccc----------cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC
Q ss_pred CCcceeeEEEeeCCeEEEEEe-----CCeEEEEECCCCeEEEE
Q 041235 306 FMEAYQPLGFWRNGEFFLESS-----DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~i~~~~~-----~~~l~~yd~~t~~~~~i 343 (362)
.......+....+..|++... +.-++.||++|+.-+.+
T Consensus 237 ~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 237 GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
No 161
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=21.96 E-value=5e+02 Score=23.63 Aligned_cols=61 Identities=10% Similarity=0.204 Sum_probs=46.6
Q ss_pred CCCEEEEEEEcC-CeeeEEEEecCCCcceeeEEEeeC-CeEEEEEeCCeEEEEEC-CCCeEEEE
Q 041235 283 SGHSFSLWMMKG-GFWTKHLSFGPFMEAYQPLGFWRN-GEFFLESSDNRLVLYDS-RYEEIRDL 343 (362)
Q Consensus 283 ~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~-~~i~~~~~~~~l~~yd~-~t~~~~~i 343 (362)
....+.|+.+.. .-|+..+++...+.....++.... +.|+-...+++.++|-+ +.++|+..
T Consensus 30 ~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkpt 93 (361)
T KOG1523|consen 30 NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPT 93 (361)
T ss_pred CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccc
Confidence 577999999988 559999998866555555665554 46777777889999988 78888753
No 162
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.59 E-value=6e+02 Score=25.96 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=39.2
Q ss_pred CCCEEEEEEEcC---CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEE
Q 041235 283 SGHSFSLWMMKG---GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIR 341 (362)
Q Consensus 283 ~~~~~~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~ 341 (362)
-+.+++||-.-+ ..|..+.. +..-+|..++|+..++++ .+...+|+.+..+++
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRD------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred cccceEEeecCcCeeEeehhhhh------hheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 467899998777 56776653 356677778888777765 777888888877765
No 163
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=21.32 E-value=1.1e+03 Score=25.72 Aligned_cols=122 Identities=18% Similarity=0.242 Sum_probs=64.0
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCC-CCC--CCCCCC-CceeEEE-EEcCe-EEEEEecCCCCEEEEE
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFP-QIT--TYDESE-MTSWRIG-IYDGS-LSLLYSEESGHSFSLW 290 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~-~~~--~~~~~~-~~~~~l~-~~~g~-L~l~~~~~~~~~~~iW 290 (362)
+|.+|..... ...|..||..+.....+.-.... ... ...... ..-..++ .-+|+ |+++.. ....+.+|
T Consensus 694 ~g~LyVad~~----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~ 767 (1057)
T PLN02919 694 NEKVYIAMAG----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRAL 767 (1057)
T ss_pred CCeEEEEECC----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEE
Confidence 5778876544 34788999887765543211000 000 000000 0111233 23454 776655 46788888
Q ss_pred EEcCCeeeEEE-----------EecCCC------cceee--EEEeeCCeEEEEEe-CCeEEEEECCCCeEEEEE
Q 041235 291 MMKGGFWTKHL-----------SFGPFM------EAYQP--LGFWRNGEFFLESS-DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 291 ~l~~~~W~~~~-----------~i~~~~------~~~~~--~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~~i~ 344 (362)
.++...-..+. .+...+ ....| +++..+|.+|+... ++++..||++++.+..+.
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence 88762211111 011000 11234 44556788887765 788999999999887654
No 164
>PTZ00420 coronin; Provisional
Probab=21.20 E-value=7.5e+02 Score=24.63 Aligned_cols=55 Identities=13% Similarity=0.255 Sum_probs=35.2
Q ss_pred CCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeE
Q 041235 283 SGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 283 ~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
.+..+.||.+.... ....+... .....+.+..+|.++... .++.+.+||+++++.
T Consensus 146 ~DgtIrIWDl~tg~--~~~~i~~~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 146 FDSFVNIWDIENEK--RAFQINMP-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred CCCeEEEEECCCCc--EEEEEecC-CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence 46789999987621 22333221 223445555678877655 478899999998765
No 165
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=20.95 E-value=1.8e+02 Score=21.82 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.1
Q ss_pred CeEEEEEeCCeEEEEECCCCeEEEEE
Q 041235 319 GEFFLESSDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 319 ~~i~~~~~~~~l~~yd~~t~~~~~i~ 344 (362)
.-++++...+.++.||++++.+..+.
T Consensus 82 ~~vvl~~~~G~Vy~yd~~~~~l~~lA 107 (125)
T PF02393_consen 82 RLVVLVGESGRVYAYDPEDDRLYRLA 107 (125)
T ss_pred eEEEEEeCCCeEEEEEcCCCEEEEEe
Confidence 34567778999999999998887775
No 166
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=20.50 E-value=5.6e+02 Score=22.52 Aligned_cols=109 Identities=11% Similarity=0.142 Sum_probs=57.5
Q ss_pred cEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEE
Q 041235 213 NVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMM 292 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l 292 (362)
..+-...-|.+++.. .--+-+||+.+..-...+ + .+.......+.-+.+.=|++.. ..+.++++|..
T Consensus 106 ~af~~ds~~lltgg~---ekllrvfdln~p~App~E----~-----~ghtg~Ir~v~wc~eD~~iLSS-add~tVRLWD~ 172 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQ---EKLLRVFDLNRPKAPPKE----I-----SGHTGGIRTVLWCHEDKCILSS-ADDKTVRLWDH 172 (334)
T ss_pred EEecccchhhhccch---HHHhhhhhccCCCCCchh----h-----cCCCCcceeEEEeccCceEEee-ccCCceEEEEe
Confidence 344444555555443 224556666664433221 2 1222334455566665555554 26889999987
Q ss_pred cCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCC
Q 041235 293 KGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRY 337 (362)
Q Consensus 293 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t 337 (362)
..+. .+.++.... -...+-+..+|+++.+.....+.++|.++
T Consensus 173 rTgt--~v~sL~~~s-~VtSlEvs~dG~ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 173 RTGT--EVQSLEFNS-PVTSLEVSQDGRILTIAYGSSVKFWDAKS 214 (334)
T ss_pred ccCc--EEEEEecCC-CCcceeeccCCCEEEEecCceeEEecccc
Confidence 5532 333343211 12334445677777776667777777665
No 167
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.46 E-value=59 Score=25.23 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=17.7
Q ss_pred cEEECceEEEEeecCCCCccEEEEEECCC
Q 041235 213 NVYLNGYCYWVASGHNSYNASILSFSMSD 241 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fD~~~ 241 (362)
-+.-+|++||........+-.|+.|+..+
T Consensus 43 Ell~GGSlYWVikg~i~~RQ~Il~i~~~~ 71 (137)
T PF07370_consen 43 ELLDGGSLYWVIKGQIQCRQRILDIEEVT 71 (137)
T ss_pred HhccCCcEEEEECCEEEEeeeeeeeeEec
Confidence 35558999999875411123566666444
No 168
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.43 E-value=5.3e+02 Score=21.84 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=44.0
Q ss_pred EEEEcCeEEEEEecCCCCEEEEEEEcCC-e-eeEEEEecC-CC----------cceeeEEEeeCCeEEEEEeCCeEEEEE
Q 041235 268 IGIYDGSLSLLYSEESGHSFSLWMMKGG-F-WTKHLSFGP-FM----------EAYQPLGFWRNGEFFLESSDNRLVLYD 334 (362)
Q Consensus 268 l~~~~g~L~l~~~~~~~~~~~iW~l~~~-~-W~~~~~i~~-~~----------~~~~~~~~~~~~~i~~~~~~~~l~~yd 334 (362)
..+++|.-.++.. ....+.||.++.. . ... ..+.| .. .....+.+..+|..++.-.++..+.||
T Consensus 17 ~l~~~~~~Ll~iT--~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAIT--SSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEe--CCCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 3556666444333 4789999999871 1 000 01111 11 112334555677766655678899999
Q ss_pred CCCCeEEEEE
Q 041235 335 SRYEEIRDLE 344 (362)
Q Consensus 335 ~~t~~~~~i~ 344 (362)
.+=+.|-+|-
T Consensus 94 ~~L~~W~~vs 103 (219)
T PF07569_consen 94 PDLGCWIRVS 103 (219)
T ss_pred cccceeEEec
Confidence 9999998874
Done!