Query 041235
Match_columns 362
No_of_seqs 140 out of 1526
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 08:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 99.3 1.7E-10 5.8E-15 102.9 19.4 195 117-344 70-279 (306)
2 2xn4_A Kelch-like protein 2; s 99.3 3E-10 1E-14 101.1 20.8 194 117-344 77-283 (302)
3 4asc_A Kelch repeat and BTB do 99.3 4.2E-10 1.4E-14 100.8 21.3 195 118-344 68-284 (315)
4 2woz_A Kelch repeat and BTB do 99.3 2.2E-09 7.6E-14 96.2 26.1 193 119-343 80-293 (318)
5 1zgk_A Kelch-like ECH-associat 99.3 4.5E-10 1.5E-14 100.3 21.0 195 117-345 90-295 (308)
6 2vpj_A Kelch-like protein 12; 99.3 9.2E-10 3.2E-14 97.8 22.0 194 117-344 78-285 (301)
7 4asc_A Kelch repeat and BTB do 99.2 3E-09 1E-13 95.2 23.1 202 116-344 12-228 (315)
8 2vpj_A Kelch-like protein 12; 99.2 2.4E-09 8.2E-14 95.1 19.6 194 117-344 31-238 (301)
9 3ii7_A Kelch-like protein 7; p 99.2 1.3E-09 4.3E-14 97.2 17.5 194 116-344 23-232 (306)
10 2xn4_A Kelch-like protein 2; s 99.2 2E-09 6.8E-14 95.7 18.5 194 117-344 30-236 (302)
11 1zgk_A Kelch-like ECH-associat 99.2 1.1E-09 3.8E-14 97.7 16.6 198 117-344 39-247 (308)
12 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 1.5E-11 5.2E-16 79.0 2.1 43 2-44 7-49 (53)
13 2uvk_A YJHT; unknown function, 99.1 4.9E-09 1.7E-13 95.4 19.3 212 108-344 19-301 (357)
14 2e31_A FBS1, F-box only protei 99.1 3E-11 1E-15 105.3 3.1 51 1-51 48-99 (297)
15 2woz_A Kelch repeat and BTB do 99.1 2E-08 6.7E-13 89.9 21.3 207 109-344 16-238 (318)
16 2zwa_A Leucine carboxyl methyl 99.0 2.5E-08 8.7E-13 98.9 19.5 203 117-345 412-643 (695)
17 2uvk_A YJHT; unknown function, 98.8 2.4E-07 8.4E-12 84.1 18.3 149 181-343 168-348 (357)
18 2ovr_B FBW7, F-BOX/WD repeat p 98.8 7.8E-06 2.7E-10 76.3 28.1 48 2-49 17-64 (445)
19 3v7d_B Cell division control p 98.8 7E-06 2.4E-10 76.9 26.9 45 4-48 15-60 (464)
20 1p22_A F-BOX/WD-repeat protein 98.6 2.1E-06 7.2E-11 80.0 17.0 43 5-47 12-58 (435)
21 1k3i_A Galactose oxidase precu 98.2 1E-05 3.5E-10 79.7 13.6 197 118-342 167-383 (656)
22 2zwa_A Leucine carboxyl methyl 98.2 2E-05 7E-10 78.0 14.6 151 181-345 412-591 (695)
23 1k3i_A Galactose oxidase precu 98.1 1.7E-05 5.8E-10 78.1 12.6 193 118-344 220-448 (656)
24 3l2o_B F-box only protein 4; s 97.9 2.3E-06 7.9E-11 73.7 0.6 49 3-51 4-52 (312)
25 2ast_B S-phase kinase-associat 97.7 1.1E-05 3.6E-10 72.5 1.5 42 2-43 7-48 (336)
26 2p1m_B Transport inhibitor res 97.0 0.00013 4.6E-09 70.6 0.7 36 2-37 4-40 (594)
27 3ogk_B Coronatine-insensitive 96.2 0.00093 3.2E-08 64.6 0.6 33 5-37 14-47 (592)
28 2z2n_A Virginiamycin B lyase; 95.8 0.77 2.6E-05 39.0 18.9 188 106-341 107-299 (299)
29 3g4e_A Regucalcin; six bladed 94.6 1.9 6.6E-05 37.0 19.0 196 108-345 24-238 (297)
30 3jro_A Fusion protein of prote 93.9 4.2 0.00014 40.2 19.0 65 272-338 169-239 (753)
31 3e5z_A Putative gluconolactona 93.9 2.7 9.2E-05 35.8 23.5 189 116-345 49-254 (296)
32 3jrp_A Fusion protein of prote 93.9 3.1 0.0001 36.4 19.7 65 272-338 171-241 (379)
33 3dsm_A Uncharacterized protein 92.9 4.4 0.00015 35.3 19.2 191 108-341 53-257 (328)
34 3dsm_A Uncharacterized protein 92.8 4.6 0.00016 35.2 23.8 144 181-345 64-221 (328)
35 1q7f_A NHL, brain tumor CG1071 92.7 4.1 0.00014 34.3 21.4 200 106-345 38-246 (286)
36 3ei3_B DNA damage-binding prot 92.5 5.3 0.00018 35.2 19.3 185 116-340 95-285 (383)
37 1l0q_A Surface layer protein; 92.4 5.5 0.00019 35.2 20.8 180 116-342 11-194 (391)
38 3e5z_A Putative gluconolactona 92.2 4.8 0.00016 34.1 16.3 104 217-342 182-291 (296)
39 3scy_A Hypothetical bacterial 91.8 4.5 0.00015 35.5 14.4 114 217-344 221-346 (361)
40 3q7m_A Lipoprotein YFGL, BAMB; 91.7 6.5 0.00022 34.7 15.5 118 211-343 47-168 (376)
41 3mbr_X Glutamine cyclotransfer 91.3 5.8 0.0002 33.2 16.2 113 214-345 27-142 (243)
42 4gqb_B Methylosome protein 50; 91.2 7.3 0.00025 34.2 17.6 194 108-342 93-294 (344)
43 1ri6_A Putative isomerase YBHE 91.0 6.9 0.00024 33.5 20.5 71 272-344 241-317 (343)
44 4e54_B DNA damage-binding prot 90.8 3.4 0.00012 37.5 12.9 186 116-340 141-330 (435)
45 3fm0_A Protein CIAO1; WDR39,SG 89.5 10 0.00034 33.1 19.2 182 116-335 37-223 (345)
46 1pjx_A Dfpase, DIISOPROPYLFLUO 89.4 9.1 0.00031 32.4 18.5 192 116-344 45-264 (314)
47 3q7m_A Lipoprotein YFGL, BAMB; 89.2 11 0.00038 33.2 20.6 195 105-343 100-302 (376)
48 4g56_B MGC81050 protein; prote 89.1 7.5 0.00026 34.2 13.4 185 115-342 113-306 (357)
49 2ojh_A Uncharacterized protein 88.7 9.2 0.00031 31.6 18.3 193 111-344 56-265 (297)
50 2qc5_A Streptogramin B lactona 88.1 11 0.00036 31.6 18.8 194 103-344 25-224 (300)
51 2dg1_A DRP35, lactonase; beta 88.0 8.4 0.00029 33.1 12.8 114 216-343 54-177 (333)
52 3nol_A Glutamine cyclotransfer 88.0 11 0.00039 31.8 14.3 113 214-345 49-164 (262)
53 3hfq_A Uncharacterized protein 88.0 5.6 0.00019 34.5 11.7 104 231-343 17-124 (347)
54 4gga_A P55CDC, cell division c 87.9 15 0.0005 33.0 22.5 195 106-342 114-315 (420)
55 3hfq_A Uncharacterized protein 87.8 13 0.00043 32.2 23.8 74 270-345 248-327 (347)
56 2iwa_A Glutamine cyclotransfer 87.7 12 0.00041 31.7 14.9 111 218-346 32-145 (266)
57 2z2n_A Virginiamycin B lyase; 87.6 11 0.00039 31.4 19.7 192 106-345 65-262 (299)
58 2fp8_A Strictosidine synthase; 87.6 13 0.00044 32.0 15.3 95 232-346 165-278 (322)
59 2hqs_A Protein TOLB; TOLB, PAL 87.3 16 0.00055 32.9 21.1 185 117-344 203-394 (415)
60 4aez_A CDC20, WD repeat-contai 86.9 16 0.00055 32.4 23.6 189 108-341 104-297 (401)
61 1k8k_C P40, ARP2/3 complex 41 86.7 15 0.00051 31.8 18.1 184 116-340 29-236 (372)
62 1q7f_A NHL, brain tumor CG1071 86.6 13 0.00045 31.0 23.8 188 106-337 86-280 (286)
63 3dwl_C Actin-related protein 2 86.4 14 0.00047 32.2 13.5 183 116-340 32-239 (377)
64 1k8k_C P40, ARP2/3 complex 41 86.3 11 0.00039 32.6 12.8 96 233-339 31-129 (372)
65 1yfq_A Cell cycle arrest prote 86.2 15 0.00051 31.4 18.0 97 233-341 171-286 (342)
66 4e54_B DNA damage-binding prot 85.8 20 0.00067 32.3 17.0 57 283-341 376-434 (435)
67 3bws_A Protein LP49; two-domai 85.7 19 0.00065 32.1 20.0 192 106-342 178-395 (433)
68 1l0q_A Surface layer protein; 85.5 18 0.00062 31.6 23.6 177 116-341 53-237 (391)
69 1rwi_B Serine/threonine-protei 85.3 12 0.00042 30.8 11.9 107 217-342 77-185 (270)
70 3u4y_A Uncharacterized protein 85.0 17 0.00058 30.9 19.1 187 118-343 109-310 (331)
71 3vgz_A Uncharacterized protein 84.6 18 0.00063 30.9 24.9 201 106-342 98-308 (353)
72 3mmy_A MRNA export factor; mRN 83.5 21 0.0007 30.6 19.6 182 116-341 107-308 (368)
73 3v65_B Low-density lipoprotein 83.4 24 0.00084 31.4 21.3 193 101-341 81-281 (386)
74 3k26_A Polycomb protein EED; W 83.3 21 0.00072 30.6 16.7 63 273-337 299-366 (366)
75 2qc5_A Streptogramin B lactona 83.2 19 0.00064 30.0 19.9 182 107-336 113-299 (300)
76 3hrp_A Uncharacterized protein 83.0 22 0.00075 32.0 13.3 110 216-343 140-255 (409)
77 1nir_A Nitrite reductase; hemo 82.7 32 0.0011 32.3 20.6 198 107-342 147-360 (543)
78 3nok_A Glutaminyl cyclase; bet 82.6 21 0.00073 30.2 13.1 109 215-345 62-173 (268)
79 1gxr_A ESG1, transducin-like e 82.4 21 0.00073 30.1 15.3 68 272-341 108-176 (337)
80 3f3f_A Nucleoporin SEH1; struc 82.3 22 0.00074 30.0 13.3 66 272-339 70-145 (351)
81 2ad6_A Methanol dehydrogenase 82.2 20 0.00069 34.1 13.2 122 211-343 56-191 (571)
82 1kv9_A Type II quinohemoprotei 82.2 17 0.00057 35.4 12.8 121 211-343 60-193 (668)
83 2pm9_A Protein WEB1, protein t 81.9 26 0.0009 30.8 15.3 64 272-339 274-339 (416)
84 3v9f_A Two-component system se 81.8 42 0.0014 33.0 19.4 109 217-344 373-485 (781)
85 3sjl_D Methylamine dehydrogena 81.3 29 0.00098 31.2 13.1 126 217-349 237-376 (386)
86 3g4e_A Regucalcin; six bladed 80.9 25 0.00084 29.8 14.4 102 217-338 24-140 (297)
87 2ghs_A AGR_C_1268P; regucalcin 80.0 28 0.00097 29.9 19.8 197 106-345 58-268 (326)
88 1r5m_A SIR4-interacting protei 79.7 31 0.0011 30.2 19.5 184 108-336 217-424 (425)
89 3jrp_A Fusion protein of prote 79.6 29 0.00099 29.8 15.1 96 233-339 34-136 (379)
90 4aez_A CDC20, WD repeat-contai 79.3 33 0.0011 30.3 22.9 98 232-341 284-384 (401)
91 3dr2_A Exported gluconolactona 79.1 29 0.00098 29.4 19.2 102 232-346 169-276 (305)
92 3v64_C Agrin; beta propeller, 79.1 33 0.0011 30.1 21.1 192 101-341 38-238 (349)
93 1kb0_A Quinohemoprotein alcoho 78.7 15 0.00053 35.7 11.3 122 211-343 71-205 (677)
94 3mkq_A Coatomer beta'-subunit; 78.6 52 0.0018 32.1 21.1 180 116-341 76-263 (814)
95 1gxr_A ESG1, transducin-like e 78.0 30 0.001 29.1 21.1 186 115-343 70-261 (337)
96 2ghs_A AGR_C_1268P; regucalcin 78.0 33 0.0011 29.5 14.2 105 217-343 60-174 (326)
97 1rwi_B Serine/threonine-protei 77.8 27 0.00094 28.5 16.7 192 103-342 29-227 (270)
98 4aow_A Guanine nucleotide-bind 77.8 31 0.0011 29.2 19.2 91 233-339 238-339 (340)
99 3jro_A Fusion protein of prote 77.1 47 0.0016 32.6 14.4 95 233-338 32-133 (753)
100 4a2l_A BT_4663, two-component 77.0 60 0.002 32.0 21.8 207 107-344 224-443 (795)
101 3fm0_A Protein CIAO1; WDR39,SG 76.8 36 0.0012 29.4 13.4 99 233-342 84-186 (345)
102 1yiq_A Quinohemoprotein alcoho 76.6 25 0.00084 34.3 12.1 122 211-343 64-198 (689)
103 3no2_A Uncharacterized protein 76.3 34 0.0012 28.8 15.7 115 214-342 84-200 (276)
104 1got_B GT-beta; complex (GTP-b 76.1 37 0.0013 29.2 21.0 93 233-340 165-260 (340)
105 4gga_A P55CDC, cell division c 75.7 34 0.0012 30.5 12.2 58 284-341 124-182 (420)
106 1pjx_A Dfpase, DIISOPROPYLFLUO 75.7 26 0.0009 29.4 11.0 110 217-342 28-166 (314)
107 3mmy_A MRNA export factor; mRN 75.7 29 0.00098 29.7 11.4 69 273-343 54-123 (368)
108 3scy_A Hypothetical bacterial 75.3 40 0.0014 29.1 18.6 72 271-344 164-249 (361)
109 2mad_H Methylamine dehydrogena 74.9 45 0.0015 29.5 13.3 54 288-342 299-355 (373)
110 4ggc_A P55CDC, cell division c 74.9 36 0.0012 28.4 11.9 59 284-342 44-103 (318)
111 3vgz_A Uncharacterized protein 74.6 39 0.0013 28.7 14.5 121 214-342 96-220 (353)
112 1nir_A Nitrite reductase; hemo 74.3 39 0.0013 31.8 12.5 113 217-340 334-461 (543)
113 3dwl_C Actin-related protein 2 73.9 43 0.0015 28.9 15.3 66 272-339 216-283 (377)
114 3u4y_A Uncharacterized protein 73.9 40 0.0014 28.5 24.1 180 116-340 19-210 (331)
115 3sfz_A APAF-1, apoptotic pepti 73.8 41 0.0014 35.0 13.6 177 116-340 982-1161(1249)
116 3dr2_A Exported gluconolactona 73.0 25 0.00086 29.8 10.1 109 217-344 55-185 (305)
117 1r5m_A SIR4-interacting protei 72.7 48 0.0016 28.9 20.7 107 216-342 216-324 (425)
118 1p22_A F-BOX/WD-repeat protein 72.4 53 0.0018 29.3 18.8 110 213-342 301-419 (435)
119 3o4h_A Acylamino-acid-releasin 71.1 68 0.0023 30.0 15.5 191 109-342 123-319 (582)
120 4hw6_A Hypothetical protein, I 70.6 63 0.0021 29.3 12.9 114 211-340 141-262 (433)
121 2ojh_A Uncharacterized protein 70.1 43 0.0015 27.3 19.4 183 116-343 21-212 (297)
122 1jmx_B Amine dehydrogenase; ox 69.8 50 0.0017 27.9 12.6 109 216-339 9-136 (349)
123 3bg1_A Protein SEC13 homolog; 69.6 51 0.0017 27.9 16.8 55 283-337 187-247 (316)
124 3tc9_A Hypothetical hydrolase; 68.7 68 0.0023 29.0 13.7 109 217-342 149-262 (430)
125 1sq9_A Antiviral protein SKI8; 68.4 59 0.002 28.2 17.5 101 232-341 207-326 (397)
126 2hqs_A Protein TOLB; TOLB, PAL 68.3 66 0.0023 28.7 19.3 186 117-343 159-350 (415)
127 3iz6_a 40S ribosomal protein R 68.2 62 0.0021 28.3 19.2 100 232-342 180-285 (380)
128 4a2l_A BT_4663, two-component 66.1 1E+02 0.0036 30.2 22.7 210 107-344 272-487 (795)
129 3odt_A Protein DOA1; ubiquitin 65.5 57 0.0019 27.0 20.4 93 233-341 206-300 (313)
130 3hxj_A Pyrrolo-quinoline quino 65.5 44 0.0015 28.2 10.1 29 217-250 147-175 (330)
131 2pm7_B Protein transport prote 65.3 60 0.002 27.1 12.5 64 273-338 67-133 (297)
132 2oiz_A Aromatic amine dehydrog 65.2 70 0.0024 27.9 11.8 55 288-344 287-341 (361)
133 1flg_A Protein (quinoprotein e 64.8 86 0.0029 29.7 12.7 121 211-343 62-199 (582)
134 3iuj_A Prolyl endopeptidase; h 64.6 1E+02 0.0036 29.7 17.9 116 215-344 289-412 (693)
135 3ow8_A WD repeat-containing pr 64.4 65 0.0022 27.4 11.0 66 273-340 48-114 (321)
136 3lrv_A PRE-mRNA-splicing facto 63.4 71 0.0024 27.3 16.0 199 102-342 88-299 (343)
137 1pby_B Quinohemoprotein amine 62.7 68 0.0023 26.9 18.0 99 233-347 220-321 (337)
138 1ddw_A GLGF-domain protein hom 62.1 13 0.00046 27.2 5.0 40 117-167 11-51 (120)
139 4h5i_A Guanine nucleotide-exch 61.8 81 0.0028 27.4 19.7 182 116-337 156-343 (365)
140 1w6s_A Methanol dehydrogenase 61.7 87 0.003 29.9 12.1 31 211-246 56-90 (599)
141 2fp8_A Strictosidine synthase; 61.2 76 0.0026 26.9 12.3 118 217-343 29-180 (322)
142 2hes_X YDR267CP; beta-propelle 60.9 55 0.0019 27.9 9.9 71 272-344 118-191 (330)
143 3bws_A Protein LP49; two-domai 60.6 88 0.003 27.5 21.2 181 116-337 233-432 (433)
144 2dg1_A DRP35, lactonase; beta 60.6 77 0.0026 26.8 21.0 202 107-345 54-271 (333)
145 4a11_B DNA excision repair pro 59.4 87 0.003 27.0 20.1 55 284-340 313-368 (408)
146 1n7d_A LDL receptor, low-densi 57.7 1.4E+02 0.0049 29.0 15.5 109 217-342 507-619 (699)
147 1ri6_A Putative isomerase YBHE 57.6 84 0.0029 26.3 18.8 100 233-344 152-271 (343)
148 1yfq_A Cell cycle arrest prote 57.3 68 0.0023 27.0 9.9 70 272-343 22-95 (342)
149 2kwv_A RAD30 homolog B, DNA po 56.7 5.7 0.0002 23.3 1.7 18 4-21 21-38 (48)
150 3v9f_A Two-component system se 56.3 1.5E+02 0.0052 28.9 23.5 209 103-343 71-293 (781)
151 2aq5_A Coronin-1A; WD40 repeat 56.2 1E+02 0.0035 26.9 14.9 68 272-341 93-167 (402)
152 2aq5_A Coronin-1A; WD40 repeat 56.0 1E+02 0.0036 26.9 24.3 94 233-339 155-256 (402)
153 2hz6_A Endoplasmic reticulum t 55.8 3.2 0.00011 37.1 0.8 27 212-243 4-30 (369)
154 1sq9_A Antiviral protein SKI8; 55.8 1E+02 0.0034 26.6 17.8 103 232-339 258-397 (397)
155 2bkl_A Prolyl endopeptidase; m 55.4 1.5E+02 0.0051 28.5 22.7 143 181-344 252-404 (695)
156 3bg1_A Protein SEC13 homolog; 55.1 59 0.002 27.5 9.0 70 271-342 23-95 (316)
157 3v7d_B Cell division control p 54.7 1.2E+02 0.004 27.1 23.9 49 233-294 291-341 (464)
158 1evh_A WH1 domain, protein (ME 54.1 24 0.00083 25.4 5.2 41 118-167 12-52 (112)
159 3c75_H MADH, methylamine dehyd 54.0 1.3E+02 0.0044 27.3 11.8 70 273-343 331-409 (426)
160 2pbi_B Guanine nucleotide-bind 53.2 1.1E+02 0.0038 26.3 19.7 175 116-334 175-354 (354)
161 4ggc_A P55CDC, cell division c 52.8 97 0.0033 25.6 22.5 66 106-191 34-99 (318)
162 3ow8_A WD repeat-containing pr 52.5 1.1E+02 0.0037 26.0 21.6 94 233-341 187-283 (321)
163 1egx_A VAsp, vasodilator-stimu 51.8 17 0.00057 26.4 4.0 42 118-167 12-53 (115)
164 1erj_A Transcriptional repress 51.7 1.2E+02 0.0042 26.4 23.5 195 107-341 133-345 (393)
165 2ynn_A Coatomer subunit beta'; 51.6 1.1E+02 0.0036 25.6 22.2 67 272-342 197-264 (304)
166 1i2h_A PSD-ZIP45(homer-1C/VESL 51.0 22 0.00075 27.7 4.7 39 118-167 17-56 (168)
167 3lrv_A PRE-mRNA-splicing facto 50.8 1.2E+02 0.004 25.9 12.6 67 272-341 138-205 (343)
168 3sre_A PON1, serum paraoxonase 50.1 1.3E+02 0.0046 26.4 14.0 222 102-357 54-323 (355)
169 3zwl_B Eukaryotic translation 50.0 1.2E+02 0.004 25.6 21.0 68 272-342 186-254 (369)
170 1npe_A Nidogen, entactin; glyc 48.8 1.1E+02 0.0037 25.0 23.6 194 105-345 44-247 (267)
171 1got_B GT-beta; complex (GTP-b 48.6 1.3E+02 0.0043 25.7 15.8 96 233-341 78-177 (340)
172 4g56_B MGC81050 protein; prote 48.5 1.3E+02 0.0045 25.9 19.0 187 106-338 148-344 (357)
173 1ijq_A LDL receptor, low-densi 47.9 1.3E+02 0.0044 25.6 21.2 189 110-343 3-201 (316)
174 2ymu_A WD-40 repeat protein; u 47.5 1.7E+02 0.0058 26.9 22.2 96 233-344 408-505 (577)
175 4h5i_A Guanine nucleotide-exch 46.9 1.4E+02 0.0049 25.8 15.6 112 217-341 187-304 (365)
176 3m0c_C LDL receptor, low-densi 46.2 2.3E+02 0.0079 28.0 20.6 108 217-343 482-595 (791)
177 3hrp_A Uncharacterized protein 45.7 1.6E+02 0.0056 26.1 22.3 201 107-345 140-362 (409)
178 3hxj_A Pyrrolo-quinoline quino 45.7 1.2E+02 0.0039 25.4 9.4 18 108-125 107-125 (330)
179 1vyh_C Platelet-activating fac 45.4 1.6E+02 0.0055 25.9 21.8 64 273-340 308-372 (410)
180 2ovr_B FBW7, F-BOX/WD repeat p 45.4 1.6E+02 0.0055 26.0 23.5 110 214-338 325-443 (445)
181 2hes_X YDR267CP; beta-propelle 45.1 1.4E+02 0.0048 25.2 12.6 62 283-344 219-287 (330)
182 1qks_A Cytochrome CD1 nitrite 45.1 2E+02 0.0069 27.0 20.6 202 108-345 166-382 (567)
183 3pe7_A Oligogalacturonate lyas 44.9 1.5E+02 0.0051 25.5 14.7 198 117-340 168-387 (388)
184 1pby_B Quinohemoprotein amine 44.7 1.3E+02 0.0046 24.9 13.4 101 232-342 11-129 (337)
185 3odt_A Protein DOA1; ubiquitin 44.7 1.3E+02 0.0044 24.7 21.7 64 272-341 154-218 (313)
186 3gre_A Serine/threonine-protei 44.3 1.4E+02 0.0046 26.4 10.0 66 272-341 181-249 (437)
187 2xdw_A Prolyl endopeptidase; a 43.9 2.3E+02 0.0077 27.3 23.1 143 181-344 259-423 (710)
188 4aow_A Guanine nucleotide-bind 43.8 1.4E+02 0.0048 24.8 18.2 56 283-340 193-249 (340)
189 3i2n_A WD repeat-containing pr 43.6 1.4E+02 0.005 24.9 20.6 65 272-338 270-354 (357)
190 1pgu_A Actin interacting prote 43.2 2E+02 0.0069 26.5 19.0 66 272-341 171-242 (615)
191 3frx_A Guanine nucleotide-bind 43.1 1.5E+02 0.0051 24.9 11.9 83 258-342 13-101 (319)
192 2p4o_A Hypothetical protein; p 43.0 1.5E+02 0.0051 24.9 14.3 104 217-339 42-149 (306)
193 3vl1_A 26S proteasome regulato 42.7 1.7E+02 0.0057 25.4 21.3 93 233-337 314-419 (420)
194 4gqb_B Methylosome protein 50; 42.1 1.7E+02 0.0057 25.2 19.7 187 107-340 137-334 (344)
195 3azo_A Aminopeptidase; POP fam 41.6 2.3E+02 0.0079 26.7 20.9 116 217-344 252-376 (662)
196 3vu4_A KMHSV2; beta-propeller 41.4 1.7E+02 0.0058 25.1 20.0 64 272-339 206-273 (355)
197 3f3f_A Nucleoporin SEH1; struc 40.3 1.6E+02 0.0053 24.4 23.7 35 310-344 309-345 (351)
198 4ery_A WD repeat-containing pr 39.8 1.6E+02 0.0055 24.4 20.8 93 233-336 215-311 (312)
199 1yr2_A Prolyl oligopeptidase; 39.4 2.7E+02 0.0093 26.9 22.1 141 181-343 294-447 (741)
200 3m0c_C LDL receptor, low-densi 39.3 2.9E+02 0.01 27.3 25.5 155 149-340 473-635 (791)
201 3k26_A Polycomb protein EED; W 38.7 1.7E+02 0.006 24.5 14.6 66 273-342 85-152 (366)
202 1jmx_B Amine dehydrogenase; ox 37.9 1.8E+02 0.0061 24.3 10.2 67 272-341 10-78 (349)
203 2ynn_A Coatomer subunit beta'; 37.0 1.8E+02 0.0062 24.1 14.5 91 233-338 36-129 (304)
204 2z3z_A Dipeptidyl aminopeptida 36.7 2.8E+02 0.0097 26.3 22.0 105 231-343 234-350 (706)
205 2ymu_A WD-40 repeat protein; u 36.5 2.5E+02 0.0086 25.6 22.1 95 233-343 449-545 (577)
206 3p5b_L Low density lipoprotein 36.1 2.3E+02 0.0079 25.1 20.0 190 109-343 84-283 (400)
207 2pm9_A Protein WEB1, protein t 35.6 1.3E+02 0.0043 26.1 8.2 66 272-339 78-147 (416)
208 3fvz_A Peptidyl-glycine alpha- 35.5 2E+02 0.0069 24.3 22.2 202 107-337 100-322 (329)
209 3ei3_B DNA damage-binding prot 35.5 2.1E+02 0.0072 24.5 20.9 155 149-337 76-236 (383)
210 3nol_A Glutamine cyclotransfer 34.7 2E+02 0.0069 24.0 14.4 139 181-346 65-211 (262)
211 2dk7_A Transcription elongatio 34.4 38 0.0013 22.2 3.1 18 323-340 25-42 (73)
212 2jp2_A Spred-2, sprouty-relate 34.4 30 0.001 25.5 3.0 43 117-167 20-65 (126)
213 3v65_B Low-density lipoprotein 33.8 2.4E+02 0.0083 24.7 23.1 192 106-344 125-326 (386)
214 2pm7_B Protein transport prote 33.7 2E+02 0.0069 23.7 22.2 64 273-338 170-239 (297)
215 3no2_A Uncharacterized protein 33.6 2E+02 0.007 23.7 13.5 111 216-344 46-162 (276)
216 3sfz_A APAF-1, apoptotic pepti 33.5 4.2E+02 0.014 27.3 22.2 191 107-342 625-833 (1249)
217 2ad6_A Methanol dehydrogenase 33.4 3.1E+02 0.01 25.7 10.9 30 211-245 109-140 (571)
218 2hz6_A Endoplasmic reticulum t 33.1 57 0.0019 28.7 5.3 100 216-342 91-197 (369)
219 1npe_A Nidogen, entactin; glyc 32.9 2E+02 0.0067 23.3 18.5 111 217-343 90-204 (267)
220 2z3z_A Dipeptidyl aminopeptida 32.8 3.3E+02 0.011 25.9 19.0 152 181-344 235-398 (706)
221 3nok_A Glutaminyl cyclase; bet 31.9 2.3E+02 0.0078 23.8 15.2 111 214-346 102-220 (268)
222 4a11_B DNA excision repair pro 31.2 2.5E+02 0.0084 24.0 19.0 68 272-341 256-327 (408)
223 4hvt_A Ritya.17583.B, post-pro 30.5 3.9E+02 0.013 26.0 12.1 121 214-344 296-436 (711)
224 1kb0_A Quinohemoprotein alcoho 30.3 3.7E+02 0.013 25.8 13.1 31 211-246 122-154 (677)
225 2vdu_B TRNA (guanine-N(7)-)-me 29.6 3E+02 0.01 24.4 23.8 69 272-343 318-399 (450)
226 2be1_A Serine/threonine-protei 29.4 2.3E+02 0.0078 24.7 8.5 27 318-344 111-137 (339)
227 2oit_A Nucleoporin 214KDA; NH2 29.3 2.6E+02 0.0089 24.9 9.3 65 273-341 162-227 (434)
228 2xyi_A Probable histone-bindin 29.2 2.9E+02 0.01 24.2 11.5 64 272-337 243-309 (430)
229 3gre_A Serine/threonine-protei 28.8 2.9E+02 0.01 24.1 11.4 98 233-342 193-297 (437)
230 2ece_A 462AA long hypothetical 28.8 3.4E+02 0.012 24.8 11.1 97 231-336 227-351 (462)
231 3s3x_D Psalmotoxin-1; acid-sen 28.8 29 0.001 18.3 1.5 23 104-126 14-36 (37)
232 3mkq_A Coatomer beta'-subunit; 28.3 4.1E+02 0.014 25.6 21.2 179 116-340 34-220 (814)
233 3azo_A Aminopeptidase; POP fam 28.2 3.8E+02 0.013 25.1 12.6 103 232-343 161-280 (662)
234 3dm0_A Maltose-binding peripla 27.9 4E+02 0.014 25.3 21.7 178 116-336 493-692 (694)
235 3dm0_A Maltose-binding peripla 27.5 4E+02 0.014 25.2 20.1 94 233-341 542-636 (694)
236 2be1_A Serine/threonine-protei 27.3 1.3E+02 0.0045 26.3 6.5 24 216-244 110-133 (339)
237 4gq1_A NUP37; propeller, trans 26.3 3.2E+02 0.011 23.7 12.4 65 272-340 155-221 (393)
238 2pbi_B Guanine nucleotide-bind 26.1 3E+02 0.01 23.4 19.5 94 232-340 176-274 (354)
239 1e0n_A Hypothetical protein; Y 25.7 65 0.0022 16.4 2.5 19 323-341 5-23 (27)
240 3ott_A Two-component system se 25.3 4.7E+02 0.016 25.2 12.7 103 222-343 77-180 (758)
241 2lh0_A Histone chaperone RTT10 24.8 32 0.0011 22.3 1.5 31 1-31 4-38 (70)
242 3vl1_A 26S proteasome regulato 24.8 3.3E+02 0.011 23.4 23.6 178 116-339 118-324 (420)
243 3syx_A Sprouty-related, EVH1 d 24.5 92 0.0032 23.0 4.1 16 118-133 19-34 (130)
244 2lyd_A Decapping protein 1; DC 24.5 1E+02 0.0035 22.9 4.5 29 320-348 30-58 (134)
245 2xbg_A YCF48-like protein; pho 23.7 3.3E+02 0.011 23.0 15.6 140 181-344 13-158 (327)
246 1xod_A Spred1; sprouty, EVH1, 23.5 98 0.0034 22.4 4.2 40 118-167 12-56 (118)
247 3sov_A LRP-6, low-density lipo 23.5 3.4E+02 0.012 23.0 17.3 190 110-343 6-203 (318)
248 2qe8_A Uncharacterized protein 23.0 3.5E+02 0.012 22.9 10.2 78 212-294 70-154 (343)
249 1erj_A Transcriptional repress 22.9 3.7E+02 0.013 23.2 15.2 92 233-340 146-241 (393)
250 4ery_A WD repeat-containing pr 22.3 3.2E+02 0.011 22.3 23.4 94 233-341 130-227 (312)
251 1yiq_A Quinohemoprotein alcoho 22.0 5.3E+02 0.018 24.7 13.5 31 211-246 115-147 (689)
252 1pgu_A Actin interacting prote 21.9 4.6E+02 0.016 23.9 21.3 63 272-338 552-615 (615)
253 3v64_C Agrin; beta propeller, 21.2 3.9E+02 0.013 22.9 23.7 192 105-343 81-282 (349)
254 3dw8_B Serine/threonine-protei 20.9 4.1E+02 0.014 23.0 12.1 111 217-344 237-380 (447)
255 2vdu_B TRNA (guanine-N(7)-)-me 20.9 4.3E+02 0.015 23.2 20.7 65 273-341 210-275 (450)
256 3kvp_A Uncharacterized protein 20.7 1.1E+02 0.0037 19.7 3.2 18 327-344 39-56 (72)
257 3iz6_a 40S ribosomal protein R 20.3 4.1E+02 0.014 22.7 20.3 188 115-338 178-376 (380)
258 2p4o_A Hypothetical protein; p 20.2 3.7E+02 0.013 22.2 22.1 189 108-338 42-243 (306)
259 1vyh_C Platelet-activating fac 20.1 4.3E+02 0.015 23.0 22.7 95 232-341 214-331 (410)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.31 E-value=1.7e-10 Score=102.85 Aligned_cols=195 Identities=9% Similarity=-0.007 Sum_probs=126.6
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..++++||.|++|..+|+++.+.... ....++ + +++.+.... .. ......+++|+..+++|+.+
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~---~--~iyv~GG~~-~~---~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPTPRDSL-------AACAAE---G--KIYTSGGSE-VG---NSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSSCCBSC-------EEEEET---T--EEEEECCBB-TT---BSCCCCEEEEETTTTEEEEE
T ss_pred ceEEEEeCCCCeEEECCCCCccccce-------eEEEEC---C--EEEEECCCC-CC---CcEeeeEEEEeCCCCceEeC
Confidence 57899999999999998876532211 112222 2 344443211 01 11125789999999999998
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCCC-C----ccEEEEEECCCceeeEec-CCCCCCCCCCCCCCCceeEEEE
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS-Y----NASILSFSMSDEVFEEIK-GPNFPQITTYDESEMTSWRIGI 270 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~----~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~ 270 (362)
+..+. +. ....++.++|.+|.+++.... . ...+..||+.+++|+.++ +|... ....++.
T Consensus 134 ~~~p~-~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~ 198 (306)
T 3ii7_A 134 PSMLT-QR----CSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR----------KNHGLVF 198 (306)
T ss_dssp CCCSS-CC----BSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC----------BSCEEEE
T ss_pred CCCcC-Cc----ceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh----------hcceEEE
Confidence 76211 11 235678899999999874321 1 356999999999999884 45433 2446778
Q ss_pred EcCeEEEEEecCCCC-EEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEE
Q 041235 271 YDGSLSLLYSEESGH-SFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIR 341 (362)
Q Consensus 271 ~~g~L~l~~~~~~~~-~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~ 341 (362)
.+|+|+++....... .-++|+++. ..|+.+..++... ....++.-++.++++.. ...+..||+++++|+
T Consensus 199 ~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 199 VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG--VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB--SCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc--cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 899999997653221 224566654 8999886554322 12222333778877754 367999999999999
Q ss_pred EEE
Q 041235 342 DLE 344 (362)
Q Consensus 342 ~i~ 344 (362)
.+.
T Consensus 277 ~~~ 279 (306)
T 3ii7_A 277 ANS 279 (306)
T ss_dssp EEE
T ss_pred eCC
Confidence 886
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.30 E-value=3e-10 Score=101.06 Aligned_cols=194 Identities=11% Similarity=0.148 Sum_probs=126.0
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..++++||.|++|..+|+++.+... ++.... .+ +++.+....... . ...+++|+..+++|+.+
T Consensus 77 ~~~~~~d~~~~~W~~~~~~p~~r~~--------~~~~~~--~~--~iyv~GG~~~~~--~---~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVANMRDRRST--------LGAAVL--NG--LLYAVGGFDGST--G---LSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBS--------CEEEEE--TT--EEEEEEEECSSC--E---EEEEEEEETTTTEEEEE
T ss_pred cceEEECCCCCceeeCCCCCccccc--------eEEEEE--CC--EEEEEcCCCCCc--c---CceEEEEeCCCCeEeec
Confidence 4689999999999999987653221 122211 12 344333211111 1 14789999999999998
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCCCC---ccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEc
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSY---NASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYD 272 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~ 272 (362)
+..+. +. ....++.++|.+|.+++..... ...+..||+.+++|+.+ ++|... ....++..+
T Consensus 140 ~~~p~-~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~ 204 (302)
T 2xn4_A 140 APMNT-RR----SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR----------SGAGVGVLN 204 (302)
T ss_dssp CCCSS-CC----BSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC----------BSCEEEEET
T ss_pred CCCCC-cc----cCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc----------ccccEEEEC
Confidence 76221 11 2356778999999998653211 34699999999999988 445433 234677889
Q ss_pred CeEEEEEecCCCC-EEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEEE
Q 041235 273 GSLSLLYSEESGH-SFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 273 g~L~l~~~~~~~~-~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i 343 (362)
|+|+++....... .-++|.++. ..|+++..++.... ..-.+..++.++++.. ...+..||+++++|+.+
T Consensus 205 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~--~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 205 NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR--NAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB--SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc--cCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 9999998754221 224666654 89999876553221 1222334788887753 24599999999999988
Q ss_pred E
Q 041235 344 E 344 (362)
Q Consensus 344 ~ 344 (362)
.
T Consensus 283 ~ 283 (302)
T 2xn4_A 283 S 283 (302)
T ss_dssp S
T ss_pred C
Confidence 5
No 3
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.30 E-value=4.2e-10 Score=100.82 Aligned_cols=195 Identities=10% Similarity=0.042 Sum_probs=127.2
Q ss_pred cEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceecc
Q 041235 118 NIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLE 197 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 197 (362)
.++++||.|++|..+|+++.++. .++.... .+ +++.+....... +......+++|+..+++|+.++
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~--------~~~~~~~--~~--~lyv~GG~~~~~--~~~~~~~~~~~d~~~~~W~~~~ 133 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRC--------LFGLGEA--LN--SIYVVGGREIKD--GERCLDSVMCYDRLSFKWGESD 133 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEE--------SCEEEEE--TT--EEEEECCEESST--TCCBCCCEEEEETTTTEEEECC
T ss_pred ceEEecCCCCeEEECCCCCcchh--------ceeEEEE--CC--EEEEEeCCcCCC--CCcccceEEEECCCCCcEeECC
Confidence 48999999999999988764321 1222221 12 444443211101 0111157899999999999987
Q ss_pred c-CcccceeecCCCCccEEECceEEEEeecC--CCCccEEEEEECCCceeeEec-CCCCCCCCCCCCCCCceeEEEEEcC
Q 041235 198 G-LFQMGHYYGSDSTDNVYLNGYCYWVASGH--NSYNASILSFSMSDEVFEEIK-GPNFPQITTYDESEMTSWRIGIYDG 273 (362)
Q Consensus 198 ~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~--~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g 273 (362)
. +.+ . ....++.++|.+|.+++.. ......+..||+.+++|+.++ +|... .....+..+|
T Consensus 134 ~~p~~--r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~~ 197 (315)
T 4asc_A 134 PLPYV--V----YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR----------SLFGATVHDG 197 (315)
T ss_dssp CCSSC--C----BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC----------BSCEEEEETT
T ss_pred CCCCc--c----cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch----------hceEEEEECC
Confidence 6 222 1 2356788999999998762 122457999999999999874 55443 2346678899
Q ss_pred eEEEEEecCCCC-EEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEeC---------------CeEEEEEC
Q 041235 274 SLSLLYSEESGH-SFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSD---------------NRLVLYDS 335 (362)
Q Consensus 274 ~L~l~~~~~~~~-~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~---------------~~l~~yd~ 335 (362)
+|+++....... .-++|+++. ..|+.+..++... ...-.+.-++.++++... ..+..||+
T Consensus 198 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~ 275 (315)
T 4asc_A 198 RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER--SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNE 275 (315)
T ss_dssp EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET
T ss_pred EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc--cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecC
Confidence 999998864332 336777765 8999987654322 122222346788776431 34889999
Q ss_pred CCCeEEEEE
Q 041235 336 RYEEIRDLE 344 (362)
Q Consensus 336 ~t~~~~~i~ 344 (362)
++++|+.+.
T Consensus 276 ~~~~W~~~~ 284 (315)
T 4asc_A 276 EEKKWEGVL 284 (315)
T ss_dssp TTTEEEEEE
T ss_pred CCChhhhhc
Confidence 999999983
No 4
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.29 E-value=2.2e-09 Score=96.18 Aligned_cols=193 Identities=13% Similarity=0.149 Sum_probs=125.1
Q ss_pred EEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceeccc
Q 041235 119 IYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLEG 198 (362)
Q Consensus 119 ~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~ 198 (362)
++++||.|++|..+|+++.+... ++++.. .+ +++.+.......... ...+++|+..+++|+.++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~--------~~~~~~--~~--~iyv~GG~~~~~~~~---~~~~~~yd~~~~~W~~~~~ 144 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCL--------FGLGEV--DD--KIYVVAGKDLQTEAS---LDSVLCYDPVAAKWSEVKN 144 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCS--------CEEEEE--TT--EEEEEEEEBTTTCCE---EEEEEEEETTTTEEEEECC
T ss_pred EEEEeCCCCcEEECCCCCccccc--------cceEEE--CC--EEEEEcCccCCCCcc---cceEEEEeCCCCCEeECCC
Confidence 88999999999999887653221 222221 12 344443222111111 1478999999999999876
Q ss_pred CcccceeecCCCCccEEECceEEEEeecCC--CCccEEEEEECCCceeeEec-CCCCCCCCCCCCCCCceeEEEEEcCeE
Q 041235 199 LFQMGHYYGSDSTDNVYLNGYCYWVASGHN--SYNASILSFSMSDEVFEEIK-GPNFPQITTYDESEMTSWRIGIYDGSL 275 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~L 275 (362)
.+ .+. ....++.++|.+|.+++... .....+..||+.+++|+.++ +|... ....++..+|+|
T Consensus 145 ~p-~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~~~i 209 (318)
T 2woz_A 145 LP-IKV----YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR----------SMFGVAIHKGKI 209 (318)
T ss_dssp CS-SCE----ESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC----------BSCEEEEETTEE
T ss_pred CC-Ccc----cccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc----------ccceEEEECCEE
Confidence 21 111 13567789999999986421 12346999999999999884 44433 234567889999
Q ss_pred EEEEecCCC-CEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe---------------CCeEEEEECCC
Q 041235 276 SLLYSEESG-HSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS---------------DNRLVLYDSRY 337 (362)
Q Consensus 276 ~l~~~~~~~-~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~---------------~~~l~~yd~~t 337 (362)
+++...... ..-++|+++- .+|+++..++... .....+..++.++++.. ...+..||+++
T Consensus 210 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 210 VIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER--SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp EEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC--BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred EEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc--cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 999875432 2336676665 8999987655322 12222334678877643 24589999999
Q ss_pred CeEEEE
Q 041235 338 EEIRDL 343 (362)
Q Consensus 338 ~~~~~i 343 (362)
++|+.+
T Consensus 288 ~~W~~~ 293 (318)
T 2woz_A 288 KEWAGM 293 (318)
T ss_dssp TEEEEE
T ss_pred CEehhh
Confidence 999998
No 5
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.29 E-value=4.5e-10 Score=100.29 Aligned_cols=195 Identities=9% Similarity=0.009 Sum_probs=126.5
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..++++||.|++|..+|+++.+.... . ...++ + +++.+....... ....+++|+..+++|+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~------~-~~~~~---~--~iyv~GG~~~~~-----~~~~~~~yd~~~~~W~~~ 152 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRI------G-VGVID---G--HIYAVGGSHGCI-----HHNSVERYEPERDEWHLV 152 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTC------E-EEEET---T--EEEEECCEETTE-----ECCCEEEEETTTTEEEEC
T ss_pred ceEEEECCCCCeEeECCCCCcCcccc------E-EEEEC---C--EEEEEcCCCCCc-----ccccEEEECCCCCeEeEC
Confidence 46899999999999999876532221 1 11222 2 344443211111 115789999999999998
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCCC-CccEEEEEECCCceeeEec-CCCCCCCCCCCCCCCceeEEEEEcCe
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS-YNASILSFSMSDEVFEEIK-GPNFPQITTYDESEMTSWRIGIYDGS 274 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~ 274 (362)
+..+. +. ....++.++|.+|.+++.... ....+..||+.+++|+.++ +|... ....++..+++
T Consensus 153 ~~~p~-~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~~~ 217 (308)
T 1zgk_A 153 APMLT-RR----IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR----------SGAGVCVLHNC 217 (308)
T ss_dssp CCCSS-CC----BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC----------BSCEEEEETTE
T ss_pred CCCCc-cc----cceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc----------ccceEEEECCE
Confidence 76221 11 235677889999999875421 2357999999999999874 44333 23456778999
Q ss_pred EEEEEecCCC-CEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEEEEE
Q 041235 275 LSLLYSEESG-HSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 275 L~l~~~~~~~-~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i~~ 345 (362)
|+++...... ..-++|+++- ..|+++..++.... ..-.+.-++.|+++.. ...+..||+++++|+.+.-
T Consensus 218 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~--~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 218 IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS--ALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB--SCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc--ceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCC
Confidence 9999865422 2334566554 89998875543221 2222234788887753 3569999999999999853
No 6
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.27 E-value=9.2e-10 Score=97.76 Aligned_cols=194 Identities=10% Similarity=0.098 Sum_probs=125.8
Q ss_pred CcEEEEeccccc---eecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCc
Q 041235 117 ENIYLWNVSMNE---YRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSW 193 (362)
Q Consensus 117 ~~~~v~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W 193 (362)
..++++||.|++ |..+|+++.+.... ....++ + +++.+.... .. .....+++|+..+++|
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-------~~~~~~---~--~lyv~GG~~-~~----~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLA-------GATTLG---D--MIYVSGGFD-GS----RRHTSMERYDPNIDQW 140 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSC-------EEEEET---T--EEEEECCBC-SS----CBCCEEEEEETTTTEE
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccce-------eEEEEC---C--EEEEEcccC-CC----cccceEEEEcCCCCeE
Confidence 479999999999 99998876532211 112222 2 444443211 11 0115789999999999
Q ss_pred eecccCcccceeecCCCCccEEECceEEEEeecCC-CCccEEEEEECCCceeeEec-CCCCCCCCCCCCCCCceeEEEEE
Q 041235 194 RDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHN-SYNASILSFSMSDEVFEEIK-GPNFPQITTYDESEMTSWRIGIY 271 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~ 271 (362)
+.++..+. +. ....++.++|.+|.+++... .....+..||+.+++|+.++ +|... ....++..
T Consensus 141 ~~~~~~p~-~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~~~~~ 205 (301)
T 2vpj_A 141 SMLGDMQT-AR----EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR----------SGAGVALL 205 (301)
T ss_dssp EEEEECSS-CC----BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC----------BSCEEEEE
T ss_pred EECCCCCC-Cc----ccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc----------ccceEEEE
Confidence 99876211 11 23567788999999987542 12357999999999999883 45433 23467788
Q ss_pred cCeEEEEEecCCCC-EEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-C-----CeEEEEECCCCeEEE
Q 041235 272 DGSLSLLYSEESGH-SFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-D-----NRLVLYDSRYEEIRD 342 (362)
Q Consensus 272 ~g~L~l~~~~~~~~-~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~-----~~l~~yd~~t~~~~~ 342 (362)
+++|+++....... .-++|.++- .+|+++..++.... ...++.-++.++++.. + ..+..||+++++|+.
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~--~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC--YVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB--SCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc--ceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 99999998754221 234555544 89999876543221 2222334788877753 1 468999999999998
Q ss_pred EE
Q 041235 343 LE 344 (362)
Q Consensus 343 i~ 344 (362)
+.
T Consensus 284 ~~ 285 (301)
T 2vpj_A 284 VT 285 (301)
T ss_dssp EE
T ss_pred cC
Confidence 85
No 7
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.22 E-value=3e-09 Score=95.17 Aligned_cols=202 Identities=9% Similarity=0.013 Sum_probs=125.2
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.++||.|++|.. ++.+.+.... .++... ..+...|++............ ....+++|+..+++|+.
T Consensus 12 G~~~~~yd~~~~~W~~-~~~~~p~~r~------~~~~~~--~~~~iyv~GG~~~~~~~~~~~-~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 12 EEGAVAYDPAANECYC-ASLSSQVPKN------HVSLVT--KENQVFVAGGLFYNEDNKEDP-MSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp TTEEEEEETTTTEEEE-EECCCCSCSS------EEEEEC--TTCCEEEEEEEEECSSCSSSC-EEEEEEEEETTTTEEEE
T ss_pred CCceEEECCCCCeEec-CCCCCCCCcc------ceEEEE--ECCEEEEEcCcccCCCCCccc-cccceEEecCCCCeEEE
Confidence 3679999999999986 4433211111 222332 233344444321111110000 00248899999999998
Q ss_pred cccCcccceeecCCCCccEEECceEEEEeecC----CCCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEE
Q 041235 196 LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGH----NSYNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGI 270 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~----~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~ 270 (362)
++..+ .+. .....+.++|.+|.+++.. ......+..||+.+++|+.+ ++|... ....++.
T Consensus 82 ~~~~p-~~r----~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~~~~ 146 (315)
T 4asc_A 82 MPPLP-SPR----CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV----------YGHTVLS 146 (315)
T ss_dssp CCCBS-SCE----ESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC----------BSCEEEE
T ss_pred CCCCC-cch----hceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc----------cceeEEE
Confidence 87622 111 2356788899999998732 22345799999999999987 455443 2346677
Q ss_pred EcCeEEEEEecC--CCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeE
Q 041235 271 YDGSLSLLYSEE--SGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEI 340 (362)
Q Consensus 271 ~~g~L~l~~~~~--~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~ 340 (362)
.+|+|+++.... ....-++|.++. .+|+++..++... ...-++.-++.++++.. ...+..||+++++|
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR--SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch--hceEEEEECCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 999999998762 222235666654 8999987654322 22223334778877754 23689999999999
Q ss_pred EEEE
Q 041235 341 RDLE 344 (362)
Q Consensus 341 ~~i~ 344 (362)
+.+.
T Consensus 225 ~~~~ 228 (315)
T 4asc_A 225 APFE 228 (315)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9885
No 8
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.17 E-value=2.4e-09 Score=95.07 Aligned_cols=194 Identities=10% Similarity=0.119 Sum_probs=125.6
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCC---c
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNS---W 193 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~---W 193 (362)
..++++||.|++|..+|+++..... ......+ + +++.+.... +. .....+++|+..++. |
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~-------~~~~~~~---~--~l~v~GG~~-~~----~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRY-------VASVSLH---D--RIYVIGGYD-GR----SRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS-------CEEEEET---T--EEEEECCBC-SS----CBCCCEEEEETTCCTTCCC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhcc-------ccEEEEC---C--EEEEEcCCC-CC----ccCceEEEEECCCCCCCee
Confidence 4789999999999999976643211 1111222 2 344443211 11 111578999999999 9
Q ss_pred eecccCcccceeecCCCCccEEECceEEEEeecCCC-CccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEE
Q 041235 194 RDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS-YNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIY 271 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~ 271 (362)
+.+...+. +. ....++.++|.+|.+++.... ....+..||+.+++|+.+ ++|... ....++..
T Consensus 94 ~~~~~~p~-~r----~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~~~~~ 158 (301)
T 2vpj_A 94 YSVAPMNV-RR----GLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR----------EGAGLVVA 158 (301)
T ss_dssp EEECCCSS-CC----BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC----------BSCEEEEE
T ss_pred EECCCCCC-Cc----cceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc----------ccceEEEE
Confidence 99876211 11 235678889999999875421 234799999999999987 455433 23456778
Q ss_pred cCeEEEEEecCCC-CEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEE
Q 041235 272 DGSLSLLYSEESG-HSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 272 ~g~L~l~~~~~~~-~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~ 342 (362)
+|+|+++...... ..-++|+++- ..|+++..++... ....++..++.|+++.. ...+..||+++++|+.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR--SGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc--ccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 9999999775422 2234566554 8999986554322 22223334788887753 3569999999999998
Q ss_pred EE
Q 041235 343 LE 344 (362)
Q Consensus 343 i~ 344 (362)
+.
T Consensus 237 ~~ 238 (301)
T 2vpj_A 237 VT 238 (301)
T ss_dssp EC
T ss_pred CC
Confidence 75
No 9
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.17 E-value=1.3e-09 Score=97.17 Aligned_cols=194 Identities=12% Similarity=0.036 Sum_probs=125.8
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
...++++||.+++|..+++++.+.... .. ..++ + +++.+.... . .....+++|+..+++|+.
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~------~~-~~~~---~--~lyv~GG~~-~-----~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDA------AC-VFWD---N--VVYILGGSQ-L-----FPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSC------EE-EEET---T--EEEEECCBS-S-----SBCCEEEEEETTTTEEEE
T ss_pred CceEEEecCCCCCEecCCCCCccccee------EE-EEEC---C--EEEEEeCCC-C-----CCcceEEEEeCCCCeEEE
Confidence 357899999999999998876532211 11 1222 2 344443111 1 111578999999999998
Q ss_pred cccCcccceeecCCCCccEEECceEEEEeecC-C-CCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEc
Q 041235 196 LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGH-N-SYNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYD 272 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-~-~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~ 272 (362)
+...+. +. ....++.++|.+|.+++.. . .....+..||+.+++|+.+ ++|... ....++..+
T Consensus 85 ~~~~p~-~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~~~~~~ 149 (306)
T 3ii7_A 85 KLGPPT-PR----DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR----------CSHGMVEAN 149 (306)
T ss_dssp EECCSS-CC----BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC----------BSCEEEEET
T ss_pred CCCCCc-cc----cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc----------ceeEEEEEC
Confidence 876221 11 2356778899999998753 1 2235799999999999988 455433 234567789
Q ss_pred CeEEEEEecCCCC-----EEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCe
Q 041235 273 GSLSLLYSEESGH-----SFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEE 339 (362)
Q Consensus 273 g~L~l~~~~~~~~-----~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~ 339 (362)
|+|+++....... .-++|.++. ..|+++..++... .....+.-++.|+++.. ...+..||+++++
T Consensus 150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR--KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh--hcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 9999998653211 334555554 8999987554322 22223334778877743 3569999999999
Q ss_pred EEEEE
Q 041235 340 IRDLE 344 (362)
Q Consensus 340 ~~~i~ 344 (362)
|+.+.
T Consensus 228 W~~~~ 232 (306)
T 3ii7_A 228 WKMVS 232 (306)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99875
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.16 E-value=2e-09 Score=95.69 Aligned_cols=194 Identities=12% Similarity=0.123 Sum_probs=125.3
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..+.++||.+++|..+++++.+... ++.... .+ +++.+...... .....+++|+..+++|+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~--------~~~~~~--~~--~lyv~GG~~~~-----~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCR--------AGMVYM--AG--LVFAVGGFNGS-----LRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBS--------CEEEEE--TT--EEEEESCBCSS-----SBCCCEEEEETTTTEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCccccc--------ceEEEE--CC--EEEEEeCcCCC-----ccccceEEECCCCCceeeC
Confidence 4689999999999999876653221 112211 11 34444311111 1115789999999999998
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCCC-CccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCe
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS-YNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGS 274 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~ 274 (362)
+..+. +. ....++.++|.+|.+++.... ....+..||+.+++|+.+ ++|... ....++..+|+
T Consensus 93 ~~~p~-~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~~~~~~~~ 157 (302)
T 2xn4_A 93 ANMRD-RR----STLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR----------SSVGVGVVGGL 157 (302)
T ss_dssp CCCSS-CC----BSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC----------BSCEEEEETTE
T ss_pred CCCCc-cc----cceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc----------cCceEEEECCE
Confidence 76221 11 235677889999999875421 234689999999999988 344433 23456778999
Q ss_pred EEEEEecCCCC---EEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEEE
Q 041235 275 LSLLYSEESGH---SFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 275 L~l~~~~~~~~---~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i 343 (362)
|+++....... .-++|.++- ..|+++..++... ....++.-++.|+++.. ...+..||+++++|+.+
T Consensus 158 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 235 (302)
T 2xn4_A 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR--SGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235 (302)
T ss_dssp EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc--ccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence 99997653221 224555554 8999986654322 22223334788887753 35699999999999987
Q ss_pred E
Q 041235 344 E 344 (362)
Q Consensus 344 ~ 344 (362)
.
T Consensus 236 ~ 236 (302)
T 2xn4_A 236 A 236 (302)
T ss_dssp C
T ss_pred C
Confidence 5
No 11
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.16 E-value=1.1e-09 Score=97.75 Aligned_cols=198 Identities=11% Similarity=0.026 Sum_probs=124.5
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..+.++||.+++|..+++++.+... ++.... .+ +++.+....... ........+++|+..+++|+.+
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~--------~~~~~~--~~--~lyv~GG~~~~~-~~~~~~~~~~~~d~~~~~W~~~ 105 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSG--------LAGCVV--GG--LLYAVGGRNNSP-DGNTDSSALDCYNPMTNQWSPC 105 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS--------CEEEEE--TT--EEEEECCEEEET-TEEEECCCEEEEETTTTEEEEC
T ss_pred ceEEEEcCCCCeEeECCCCCccccc--------ceEEEE--CC--EEEEECCCcCCC-CCCeecceEEEECCCCCeEeEC
Confidence 5789999999999999876653221 112211 12 333332111000 0001114789999999999998
Q ss_pred ccCcccceeecCCCCccEEECceEEEEeecCC-CCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCe
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGYCYWVASGHN-SYNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGS 274 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~ 274 (362)
+..+. +. .....+.++|.+|.+++... .....+..||+.+++|+.+ ++|... .....+..+|+
T Consensus 106 ~~~p~-~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~~~ 170 (308)
T 1zgk_A 106 APMSV-PR----NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR----------IGVGVAVLNRL 170 (308)
T ss_dssp CCCSS-CC----BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC----------BSCEEEEETTE
T ss_pred CCCCc-Cc----cccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc----------cceEEEEECCE
Confidence 76221 11 23567788999999976431 1124699999999999988 455443 23456777999
Q ss_pred EEEEEecCCCC-EEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEEEE
Q 041235 275 LSLLYSEESGH-SFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 275 L~l~~~~~~~~-~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i~ 344 (362)
|+++....... .-++|.++- ..|+++..++.... ..-++.-++.|+++.. ...+..||+++++|+.+.
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS--GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB--SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc--cceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 99998754221 234555554 89998865543221 2222233788887753 366999999999999875
No 12
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.12 E-value=1.5e-11 Score=79.00 Aligned_cols=43 Identities=26% Similarity=0.511 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHccCCccccccccccccchhhhcCCHHHH
Q 041235 2 TGYRELSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDPNFI 44 (362)
Q Consensus 2 ~~~~~LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~ 44 (362)
..|..||+|++.+||++||.+++.++++|||+|+.++.++.|-
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW 49 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 49 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence 4688999999999999999999999999999999999988763
No 13
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.12 E-value=4.9e-09 Score=95.44 Aligned_cols=212 Identities=13% Similarity=0.073 Sum_probs=126.6
Q ss_pred cccEEEee---cCcEEEEecc--ccceecccCCC-CCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCc
Q 041235 108 DGIFCFFE---NENIYLWNVS--MNEYRIVTKRK-ARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLL 181 (362)
Q Consensus 108 ~GLl~~~~---~~~~~v~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 181 (362)
+|-|.+.. ...++++||. +++|..+|+++ .++.. .....++ + +++.+...............
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-------~~~~~~~---~--~lyv~GG~~~~~~~~~~~~~ 86 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-------ATSAFID---G--NLYVFGGIGKNSEGLTQVFN 86 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-------CEEEEET---T--EEEEECCEEECTTSCEEECC
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-------ceEEEEC---C--EEEEEcCCCCCCCccceeec
Confidence 55555443 4579999998 49999999866 32211 1112222 2 34433321010000011115
Q ss_pred cEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCC--------------------------------
Q 041235 182 PVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS-------------------------------- 229 (362)
Q Consensus 182 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------------------- 229 (362)
.+++|+..+++|+.++...+.+. ....++..+|.+|.+++....
T Consensus 87 ~v~~yd~~~~~W~~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (357)
T 2uvk_A 87 DVHKYNPKTNSWVKLMSHAPMGM----AGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAE 162 (357)
T ss_dssp CEEEEETTTTEEEECSCCCSSCC----SSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGG
T ss_pred cEEEEeCCCCcEEECCCCCCccc----ccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccc
Confidence 78999999999999887322221 224457799999999875310
Q ss_pred ---CccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCC--CCEEEEEEEc---C-CeeeE
Q 041235 230 ---YNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEES--GHSFSLWMMK---G-GFWTK 299 (362)
Q Consensus 230 ---~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~--~~~~~iW~l~---~-~~W~~ 299 (362)
....+..||+.+++|+.+ ++|.... ....++..+++|+++..... ...-++|.++ + ..|++
T Consensus 163 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~~---------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~ 233 (357)
T 2uvk_A 163 DYFFNKFLLSFDPSTQQWSYAGESPWYGT---------AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK 233 (357)
T ss_dssp GGCCCCEEEEEETTTTEEEEEEECSSCCC---------BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEE
T ss_pred ccCCcccEEEEeCCCCcEEECCCCCCCCc---------ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEe
Confidence 124899999999999987 4554321 22467788999999976431 1233566554 2 89999
Q ss_pred EEEecCCCcceeeEEEeeCCeEEEEEeC-----------------------CeEEEEECCCCeEEEEE
Q 041235 300 HLSFGPFMEAYQPLGFWRNGEFFLESSD-----------------------NRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 300 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~l~~yd~~t~~~~~i~ 344 (362)
+..++.........++..+++|+++... ..+..||+++++|+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~ 301 (357)
T 2uvk_A 234 LAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG 301 (357)
T ss_dssp CCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE
T ss_pred cCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC
Confidence 8766433222233234457888877531 25789999999999886
No 14
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.09 E-value=3e-11 Score=105.27 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=47.4
Q ss_pred CCCCCCCCHHHHHHHHccCCccccc-cccccccchhhhcCCHHHHHHhhccC
Q 041235 1 MTGYRELSHDLLVETLSRLPVKSLM-RFRCVSKSWFSLLKDPNFIYKHLNRD 51 (362)
Q Consensus 1 ~~~~~~LP~dll~~IL~rLp~~~l~-r~r~VcK~W~~li~~p~F~~~~~~~~ 51 (362)
|..+..||+|++.+||+|||+++|+ ||++|||+|++++++|.|.+++..+.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 4567899999999999999999999 99999999999999999999998765
No 15
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.08 E-value=2e-08 Score=89.95 Aligned_cols=207 Identities=11% Similarity=0.094 Sum_probs=124.0
Q ss_pred ccEEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccC-CccEEEEE
Q 041235 109 GIFCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHD-LLPVAIYN 187 (362)
Q Consensus 109 GLl~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~-~~~~~vys 187 (362)
+.|++..+....++||.|++|...|.+. +.... .+.... ..+. |+.+.....+....... ...+++|+
T Consensus 16 ~~i~~~GG~~~~~yd~~~~~W~~~~~~~-~~~r~------~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d 84 (318)
T 2woz_A 16 DLILLVNDTAAVAYDPMENECYLTALAE-QIPRN------HSSIVT--QQNQ--VYVVGGLYVDEENKDQPLQSYFFQLD 84 (318)
T ss_dssp EEEEEECSSEEEEEETTTTEEEEEEECT-TSCSS------EEEEEC--SSSC--EEEEESSCC-------CCCBEEEEEE
T ss_pred chhhhccccceEEECCCCCceecccCCc-cCCcc------ceEEEE--ECCE--EEEECCcccCccccCCCccccEEEEe
Confidence 3444444456899999999999844321 11111 222222 2222 33333110000000000 02388999
Q ss_pred cCCCCceeccc-CcccceeecCCCCccEEECceEEEEeecC---CCCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCC
Q 041235 188 FSTNSWRDLEG-LFQMGHYYGSDSTDNVYLNGYCYWVASGH---NSYNASILSFSMSDEVFEEI-KGPNFPQITTYDESE 262 (362)
Q Consensus 188 s~~~~W~~~~~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~---~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~ 262 (362)
..+++|+.++. +.+ . .....+.++|.+|.+++.. ......+..||+.+++|+.+ ++|...
T Consensus 85 ~~~~~W~~~~~~p~~--r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--------- 149 (318)
T 2woz_A 85 NVSSEWVGLPPLPSA--R----CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV--------- 149 (318)
T ss_dssp TTTTEEEECSCBSSC--B----CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE---------
T ss_pred CCCCcEEECCCCCcc--c----cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc---------
Confidence 99999998876 222 1 2356788899999998753 12235699999999999988 455443
Q ss_pred CceeEEEEEcCeEEEEEecCC--CCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe------CCeEEE
Q 041235 263 MTSWRIGIYDGSLSLLYSEES--GHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS------DNRLVL 332 (362)
Q Consensus 263 ~~~~~l~~~~g~L~l~~~~~~--~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~l~~ 332 (362)
....++..+|+|+++..... ...-++|+++- .+|+++..++... ...-++..++.|+++.. ...+..
T Consensus 150 -~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 226 (318)
T 2woz_A 150 -YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR--SMFGVAIHKGKIVIAGGVTEDGLSASVEA 226 (318)
T ss_dssp -ESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred -cccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc--ccceEEEECCEEEEEcCcCCCCccceEEE
Confidence 23456778999999886421 11224666654 8999987554322 11222334778877753 245889
Q ss_pred EECCCCeEEEEE
Q 041235 333 YDSRYEEIRDLE 344 (362)
Q Consensus 333 yd~~t~~~~~i~ 344 (362)
||+++++|+.+.
T Consensus 227 yd~~~~~W~~~~ 238 (318)
T 2woz_A 227 FDLKTNKWEVMT 238 (318)
T ss_dssp EETTTCCEEECC
T ss_pred EECCCCeEEECC
Confidence 999999999875
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.98 E-value=2.5e-08 Score=98.86 Aligned_cols=203 Identities=12% Similarity=0.110 Sum_probs=122.5
Q ss_pred CcEEEEeccccceeccc-CCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 117 ENIYLWNVSMNEYRIVT-KRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP-~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
..++++||.|++|..++ +.+....... +..++.......+ +++.++...... . ....+++|+..+++|+.
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~---R~~hs~~~~~~~~--~lyv~GG~~~~~-~---~~~dv~~yd~~t~~W~~ 482 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVA---RMCHTFTTISRNN--QLLLIGGRKAPH-Q---GLSDNWIFDMKTREWSM 482 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCC---CBSCEEEEETTTT--EEEEECCBSSTT-C---BCCCCEEEETTTTEEEE
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCcc---ccceEEEEEccCC--EEEEEcCCCCCC-C---ccccEEEEeCCCCcEEE
Confidence 46899999999999998 5321111110 0122222221012 344443111111 0 11468999999999999
Q ss_pred cccCcccceeecCCCCccEEE-CceEEEEeecCCCCccEEEEEECCCceeeEec----CCCCCCCCCCCCCCCceeEEEE
Q 041235 196 LEGLFQMGHYYGSDSTDNVYL-NGYCYWVASGHNSYNASILSFSMSDEVFEEIK----GPNFPQITTYDESEMTSWRIGI 270 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~~~~~~l~~ 270 (362)
++..+ .+. ....++.+ +|.+|.+++..... .+..||+.+++|+.++ +|... .....+.
T Consensus 483 ~~~~p-~~R----~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r----------~~~~a~v 545 (695)
T 2zwa_A 483 IKSLS-HTR----FRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNS----------LVSAGLE 545 (695)
T ss_dssp CCCCS-BCC----BSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSC----------CBSCEEE
T ss_pred CCCCC-CCc----ccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcc----------cceeEEE
Confidence 87621 111 23455665 99999998865222 7999999999999886 44333 1223344
Q ss_pred Ec---CeEEEEEecCC-----CCEEEEEEEcCCe------eeEEEEecCCCcceeeEEEeeCCeEEEEEe---------C
Q 041235 271 YD---GSLSLLYSEES-----GHSFSLWMMKGGF------WTKHLSFGPFMEAYQPLGFWRNGEFFLESS---------D 327 (362)
Q Consensus 271 ~~---g~L~l~~~~~~-----~~~~~iW~l~~~~------W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~---------~ 327 (362)
++ |+|+++..... ...+.+|.++... |+++..+++.........+.+++.|+++.. .
T Consensus 546 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 625 (695)
T 2zwa_A 546 FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRT 625 (695)
T ss_dssp EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTT
T ss_pred EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCC
Confidence 45 88999987531 2445555555555 888877543322333344444488888754 2
Q ss_pred CeEEEEECCCCeEEEEEE
Q 041235 328 NRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 328 ~~l~~yd~~t~~~~~i~~ 345 (362)
..+..||+++++|+.+.+
T Consensus 626 ~~v~~yd~~t~~W~~~~~ 643 (695)
T 2zwa_A 626 NSIISLDPLSETLTSIPI 643 (695)
T ss_dssp TSEEEEETTTTEEEECCC
T ss_pred CeEEEEECCCCeEEEeec
Confidence 459999999999996554
No 17
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.81 E-value=2.4e-07 Score=84.11 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=92.2
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCC--CccEEEEEEC--CCceeeEe-cCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS--YNASILSFSM--SDEVFEEI-KGPNFPQI 255 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fD~--~~~~~~~i-~~P~~~~~ 255 (362)
..+++|+..+++|+.+...+. +. . .....+.++|.+|.+++.... ....+..||+ .+++|+.+ ++|...
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~-~~-~--~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~-- 241 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPW-YG-T--AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD-- 241 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSS-CC-C--BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT--
T ss_pred ccEEEEeCCCCcEEECCCCCC-CC-c--ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc--
Confidence 478999999999999865221 11 1 125678889999999764211 1235777876 89999987 344332
Q ss_pred CCCCCCCCceeEEEEEcCeEEEEEecCC------------------CCEEEEEEEcC--CeeeEEEEecCCCcceeeEEE
Q 041235 256 TTYDESEMTSWRIGIYDGSLSLLYSEES------------------GHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGF 315 (362)
Q Consensus 256 ~~~~~~~~~~~~l~~~~g~L~l~~~~~~------------------~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~ 315 (362)
......++..+|+|+++..... ...-.+|+++- .+|+++..++.... ...++
T Consensus 242 ------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~ 313 (357)
T 2uvk_A 242 ------GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA--YGVSL 313 (357)
T ss_dssp ------CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB--SSEEE
T ss_pred ------ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc--cceeE
Confidence 1123457889999999986421 11234555554 89999887764322 22334
Q ss_pred eeCCeEEEEEe-------CCeEEEEECCCCeEEEE
Q 041235 316 WRNGEFFLESS-------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 316 ~~~~~i~~~~~-------~~~l~~yd~~t~~~~~i 343 (362)
.-+++|+++.. ...+..+++++++|...
T Consensus 314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 314 PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 45788887754 13588899999998664
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.79 E-value=7.8e-06 Score=76.26 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHccCCccccccccccccchhhhcCCHHHHHHhhc
Q 041235 2 TGYRELSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDPNFIYKHLN 49 (362)
Q Consensus 2 ~~~~~LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~ 49 (362)
.-++.||+|++.+||+.|++++|.++.+|||+|+.++.++.+-+....
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 346789999999999999999999999999999999999887776543
No 19
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.76 E-value=7e-06 Score=76.87 Aligned_cols=45 Identities=16% Similarity=0.350 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHccCCccccccccccccchhhhcCC-HHHHHHhh
Q 041235 4 YRELSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKD-PNFIYKHL 48 (362)
Q Consensus 4 ~~~LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~-p~F~~~~~ 48 (362)
++.||+|++.+||+.||+++|.++++|||+|+.++.+ +..-+.+.
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3469999999999999999999999999999999997 66555443
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.57 E-value=2.1e-06 Score=79.97 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=38.0
Q ss_pred CCCCHH----HHHHHHccCCccccccccccccchhhhcCCHHHHHHh
Q 041235 5 RELSHD----LLVETLSRLPVKSLMRFRCVSKSWFSLLKDPNFIYKH 47 (362)
Q Consensus 5 ~~LP~d----ll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~ 47 (362)
+.||+| ++..||+.|++++|.++.+|||+|+.++.++.+=+..
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 469999 9999999999999999999999999999877654443
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.24 E-value=1e-05 Score=79.71 Aligned_cols=197 Identities=9% Similarity=-0.003 Sum_probs=113.2
Q ss_pred cEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcc-cccCCccEEEEEcCCCCceec
Q 041235 118 NIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRL-SVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~-~~~~~~~~~vyss~~~~W~~~ 196 (362)
.+..+||.+++|..+++++.. .+..++.+..+ +++.+......... .......+++|+..+++|+.+
T Consensus 167 ~~~~~dp~~~~W~~~~~~P~~----------~~~~av~~~~g--~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~ 234 (656)
T 1k3i_A 167 SYTAPQPGLGRWGPTIDLPIV----------PAAAAIEPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR 234 (656)
T ss_dssp CCCCCCTTSCEEEEEEECSSC----------CSEEEEETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC
T ss_pred ccccCCCCCCeeeeeccCCCC----------ceeEEEEecCC--EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC
Confidence 355678999999988876641 11222222222 45544322111100 011113689999999999987
Q ss_pred cc-CcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEec-CCCCCCCCCCCCCCCceeEEEEE-cC
Q 041235 197 EG-LFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIK-GPNFPQITTYDESEMTSWRIGIY-DG 273 (362)
Q Consensus 197 ~~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~-~g 273 (362)
.. +.+.. .. .....+..+|.+|.+++.. ...+..||+.+++|+.++ +|... ....++.+ +|
T Consensus 235 ~~~~~~~~-~~--~~~~~~~~~g~lyv~GG~~---~~~v~~yd~~t~~W~~~~~~~~~R----------~~~s~~~~~dg 298 (656)
T 1k3i_A 235 TVTVTKHD-MF--CPGISMDGNGQIVVTGGND---AKKTSLYDSSSDSWIPGPDMQVAR----------GYQSSATMSDG 298 (656)
T ss_dssp EEEECSCC-CS--SCEEEECTTSCEEEECSSS---TTCEEEEEGGGTEEEECCCCSSCC----------SSCEEEECTTS
T ss_pred cccCCCCC-Cc--cccccCCCCCCEEEeCCCC---CCceEEecCcCCceeECCCCCccc----------cccceEEecCC
Confidence 65 22211 11 0112334689999998854 237999999999999873 44332 23466777 99
Q ss_pred eEEEEEec-C---CCCEEEEEEEcCCeeeEEEEe-----cCCCc------ceeeEEEe-eCCeEEEEEeCCeEEEEECCC
Q 041235 274 SLSLLYSE-E---SGHSFSLWMMKGGFWTKHLSF-----GPFME------AYQPLGFW-RNGEFFLESSDNRLVLYDSRY 337 (362)
Q Consensus 274 ~L~l~~~~-~---~~~~~~iW~l~~~~W~~~~~i-----~~~~~------~~~~~~~~-~~~~i~~~~~~~~l~~yd~~t 337 (362)
+|+++... . ....+.+|..+...|+.+... ..... ......++ .++.++.......+..||+++
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~ 378 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 378 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCC
Confidence 99999873 2 124566666655899987321 11100 01111111 234444333467789999999
Q ss_pred CeEEE
Q 041235 338 EEIRD 342 (362)
Q Consensus 338 ~~~~~ 342 (362)
+.|..
T Consensus 379 ~~w~~ 383 (656)
T 1k3i_A 379 SGDVK 383 (656)
T ss_dssp TCEEE
T ss_pred cceee
Confidence 98754
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.20 E-value=2e-05 Score=78.02 Aligned_cols=151 Identities=7% Similarity=-0.028 Sum_probs=100.2
Q ss_pred ccEEEEEcCCCCceecc-c-C-cccceeecCCCCccEEE--CceEEEEeecCCC--CccEEEEEECCCceeeEe-cCCCC
Q 041235 181 LPVAIYNFSTNSWRDLE-G-L-FQMGHYYGSDSTDNVYL--NGYCYWVASGHNS--YNASILSFSMSDEVFEEI-KGPNF 252 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~-~-~-~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~--~~~~il~fD~~~~~~~~i-~~P~~ 252 (362)
..+++|+..+++|+.+. . + ..++... .....+.+ +|.+|.+++.... ....+..||+.+++|+.+ ++|..
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R--~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~ 489 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVAR--MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT 489 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCC--BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccc--cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC
Confidence 57899999999999887 3 1 1122211 24567888 9999999876521 234689999999999987 45543
Q ss_pred CCCCCCCCCCCceeEEEEE-cCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEe---cCCCcceeeEEEeeC-CeEEEEE
Q 041235 253 PQITTYDESEMTSWRIGIY-DGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSF---GPFMEAYQPLGFWRN-GEFFLES 325 (362)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i---~~~~~~~~~~~~~~~-~~i~~~~ 325 (362)
. .....+.. +|+|+++.+..... ++|+++. ..|+.+... +........+.+..+ +.+|++.
T Consensus 490 R----------~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~G 557 (695)
T 2zwa_A 490 R----------FRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG 557 (695)
T ss_dssp C----------BSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEEC
T ss_pred c----------ccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEEC
Confidence 3 23455664 99999998765333 6777765 899988753 211111111222323 7788775
Q ss_pred e--------CCeEEEEECCCCe------EEEEEE
Q 041235 326 S--------DNRLVLYDSRYEE------IRDLEI 345 (362)
Q Consensus 326 ~--------~~~l~~yd~~t~~------~~~i~~ 345 (362)
. ...+..||+++++ |+.+.-
T Consensus 558 G~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~ 591 (695)
T 2zwa_A 558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ 591 (695)
T ss_dssp CBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE
T ss_pred CcCCCCCeeeCcEEEEEccCCccccceEEEEcCC
Confidence 3 2569999999999 777653
No 23
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.14 E-value=1.7e-05 Score=78.14 Aligned_cols=193 Identities=10% Similarity=0.076 Sum_probs=111.8
Q ss_pred cEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceecc
Q 041235 118 NIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLE 197 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 197 (362)
.+.++||.|++|..+++++...... ..+..+.. .+ +++.+.. ... ..+++|+..++.|+.+.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~------~~~~~~~~-~g--~lyv~GG--~~~-------~~v~~yd~~t~~W~~~~ 281 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMF------CPGISMDG-NG--QIVVTGG--NDA-------KKTSLYDSSSDSWIPGP 281 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCS------SCEEEECT-TS--CEEEECS--SST-------TCEEEEEGGGTEEEECC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCc------cccccCCC-CC--CEEEeCC--CCC-------CceEEecCcCCceeECC
Confidence 5789999999999998765432211 11222211 11 3444421 111 36899999999999886
Q ss_pred cCcccceeecCCCCccEEE-CceEEEEeecCC--CCccEEEEEECCCceeeEec------CCCCCCCCCCCCCCCceeEE
Q 041235 198 GLFQMGHYYGSDSTDNVYL-NGYCYWVASGHN--SYNASILSFSMSDEVFEEIK------GPNFPQITTYDESEMTSWRI 268 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~--~~~~~il~fD~~~~~~~~i~------~P~~~~~~~~~~~~~~~~~l 268 (362)
..+ .+. ....++.+ +|++|.+++... .....+..||+.+++|+.++ +|... . ..+
T Consensus 282 ~~~-~~R----~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~--------~---~~~ 345 (656)
T 1k3i_A 282 DMQ-VAR----GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD--------K---QGL 345 (656)
T ss_dssp CCS-SCC----SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC--------T---TGG
T ss_pred CCC-ccc----cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc--------c---cce
Confidence 521 111 12445677 999999988421 12346899999999999873 22221 0 012
Q ss_pred EEEcCeEEEEEecC-------CCCEEEEEEEcCCeeeEEEEecCC----C-cceeeEEE---eeCCeEEEEEeC------
Q 041235 269 GIYDGSLSLLYSEE-------SGHSFSLWMMKGGFWTKHLSFGPF----M-EAYQPLGF---WRNGEFFLESSD------ 327 (362)
Q Consensus 269 ~~~~g~L~l~~~~~-------~~~~~~iW~l~~~~W~~~~~i~~~----~-~~~~~~~~---~~~~~i~~~~~~------ 327 (362)
+..+++++++.... ....+..|..+...|.......+. . ......++ ..+++|+++...
T Consensus 346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence 23455555554321 245666666666677654332221 0 00111122 136888887541
Q ss_pred ---C---eEEEEECCCCeEEEEE
Q 041235 328 ---N---RLVLYDSRYEEIRDLE 344 (362)
Q Consensus 328 ---~---~l~~yd~~t~~~~~i~ 344 (362)
. .+..||+++++|..+.
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~ 448 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFA 448 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEEC
T ss_pred CcCCcceEEEcCCCCCCCeeEEc
Confidence 1 6889999999998774
No 24
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.87 E-value=2.3e-06 Score=73.74 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHccCCccccccccccccchhhhcCCHHHHHHhhccC
Q 041235 3 GYRELSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDPNFIYKHLNRD 51 (362)
Q Consensus 3 ~~~~LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~ 51 (362)
+++.||+|++..||+.|++++|+++.+|||+||.+.+++..=+.+..+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 5678999999999999999999999999999999999999887776654
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.66 E-value=1.1e-05 Score=72.46 Aligned_cols=42 Identities=26% Similarity=0.537 Sum_probs=38.6
Q ss_pred CCCCCCCHHHHHHHHccCCccccccccccccchhhhcCCHHH
Q 041235 2 TGYRELSHDLLVETLSRLPVKSLMRFRCVSKSWFSLLKDPNF 43 (362)
Q Consensus 2 ~~~~~LP~dll~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F 43 (362)
..|+.||+|++.+||++|+.+++.+++.|||+|+.++.+|..
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 578999999999999999999999999999999999876653
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.00 E-value=0.00013 Score=70.55 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCCCCCCHHHHHHHHccCC-ccccccccccccchhhh
Q 041235 2 TGYRELSHDLLVETLSRLP-VKSLMRFRCVSKSWFSL 37 (362)
Q Consensus 2 ~~~~~LP~dll~~IL~rLp-~~~l~r~r~VcK~W~~l 37 (362)
..|+.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4688999999999999999 99999999999999988
No 27
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.21 E-value=0.00093 Score=64.59 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHccC-Cccccccccccccchhhh
Q 041235 5 RELSHDLLVETLSRL-PVKSLMRFRCVSKSWFSL 37 (362)
Q Consensus 5 ~~LP~dll~~IL~rL-p~~~l~r~r~VcK~W~~l 37 (362)
..||+|++.+||++| |.+++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 479999999999999 899999999999999887
No 28
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=95.78 E-value=0.77 Score=38.96 Aligned_cols=188 Identities=9% Similarity=-0.005 Sum_probs=96.9
Q ss_pred cccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccE
Q 041235 106 PCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPV 183 (362)
Q Consensus 106 s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 183 (362)
..+|-+.+.. ...++++|| +++......+.. .. ...++.+|+... +.... ... -.+
T Consensus 107 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~--~~------~~~~i~~~~~g~---l~v~~---~~~-------~~i 164 (299)
T 2z2n_A 107 GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK--GS------YPSFITLGSDNA---LWFTE---NQN-------NAI 164 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSST--TC------CEEEEEECTTSC---EEEEE---TTT-------TEE
T ss_pred CCCCCEEEEecCCceEEEECC-CCCEEEecCCCC--CC------CCceEEEcCCCC---EEEEe---CCC-------CEE
Confidence 3466666654 457899999 776665432211 11 156677776532 22221 111 355
Q ss_pred EEEEcCCCCceecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCC
Q 041235 184 AIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDES 261 (362)
Q Consensus 184 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~ 261 (362)
.+|+. ++.......+.... ...++.. +|.+|+.... ...|..||. ++.+..+..|...
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~------~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~~~~~~-------- 224 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPAS------GPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEFKIPTPN-------- 224 (299)
T ss_dssp EEECT-TCCEEEEECSSTTC------CEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEECSSTT--------
T ss_pred EEEcC-CCcEEEeeCCCCCC------cceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEECCCCC--------
Confidence 66776 55554432211110 1112333 5787655432 238999999 7777776666322
Q ss_pred CCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeE
Q 041235 262 EMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEI 340 (362)
Q Consensus 262 ~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~ 340 (362)
. ....+.. -+|.|++... ....+.+|.. +..- ....++........+.+ .+|.+++....+.+..||++++++
T Consensus 225 ~-~~~~i~~~~~g~l~v~~~--~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~~ 298 (299)
T 2z2n_A 225 A-RPHAITAGAGIDLWFTEW--GANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDNM 298 (299)
T ss_dssp C-CEEEEEECSTTCEEEEET--TTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC----
T ss_pred C-CceeEEECCCCCEEEecc--CCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcccC
Confidence 1 1223433 3677777654 3556666655 2221 12222211122344555 678888876678999999998876
Q ss_pred E
Q 041235 341 R 341 (362)
Q Consensus 341 ~ 341 (362)
+
T Consensus 299 ~ 299 (299)
T 2z2n_A 299 E 299 (299)
T ss_dssp -
T ss_pred C
Confidence 4
No 29
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=94.62 E-value=1.9 Score=36.96 Aligned_cols=196 Identities=10% Similarity=0.095 Sum_probs=99.8
Q ss_pred cccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEE
Q 041235 108 DGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAI 185 (362)
Q Consensus 108 ~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 185 (362)
+|-+.+.+ ...++.+||.+++...+.... . ..++.+++..+ -+++. . ..+.+
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~-----~------~~~i~~~~dG~--l~v~~------~-------~~l~~ 77 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA-----P------VSSVALRQSGG--YVATI------G-------TKFCA 77 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEEEECSS-----C------EEEEEEBTTSS--EEEEE------T-------TEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEeCCC-----c------eEEEEECCCCC--EEEEE------C-------CeEEE
Confidence 45454544 567899999998765543221 1 45677777554 22321 1 46778
Q ss_pred EEcCCCCceecccC-cccceeecCCCCccEEECceEEEEeecCC-------CCccEEEEEECCCceeeEecCCCCCCCCC
Q 041235 186 YNFSTNSWRDLEGL-FQMGHYYGSDSTDNVYLNGYCYWVASGHN-------SYNASILSFSMSDEVFEEIKGPNFPQITT 257 (362)
Q Consensus 186 yss~~~~W~~~~~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~~-------~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 257 (362)
|+.+++.++.+... ...+... ...-.+.-+|.+|+-+.... .....|..+|.... ...+. ...
T Consensus 78 ~d~~~g~~~~~~~~~~~~~~~~--~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~--~~~---- 148 (297)
T 3g4e_A 78 LNWKEQSAVVLATVDNDKKNNR--FNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYF--DQV---- 148 (297)
T ss_dssp EETTTTEEEEEEECCTTCSSEE--EEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEE--EEE----
T ss_pred EECCCCcEEEEEecCCCCCCCC--CCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEe--ecc----
Confidence 88888877665431 1111110 00111223688665443210 11347888887643 22221 000
Q ss_pred CCCCCCceeEEEE-EcCe-EEEEEecCCCCEEEEEEEc-C-CeeeEE---EEecCCCcceeeEEEeeCCeEEEEEe-CCe
Q 041235 258 YDESEMTSWRIGI-YDGS-LSLLYSEESGHSFSLWMMK-G-GFWTKH---LSFGPFMEAYQPLGFWRNGEFFLESS-DNR 329 (362)
Q Consensus 258 ~~~~~~~~~~l~~-~~g~-L~l~~~~~~~~~~~iW~l~-~-~~W~~~---~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~ 329 (362)
... ..++. -+|+ |+++.. ....+.+|.++ + ...... ..+........-+++..+|.+++... ..+
T Consensus 149 ----~~p-ngi~~spdg~~lyv~~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~ 221 (297)
T 3g4e_A 149 ----DIS-NGLDWSLDHKIFYYIDS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR 221 (297)
T ss_dssp ----SBE-EEEEECTTSCEEEEEEG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred ----ccc-cceEEcCCCCEEEEecC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence 001 12222 2454 555443 35677777774 2 333221 22221112334455666788887764 677
Q ss_pred EEEEECCCCeE-EEEEE
Q 041235 330 LVLYDSRYEEI-RDLEI 345 (362)
Q Consensus 330 l~~yd~~t~~~-~~i~~ 345 (362)
+..||++++++ ..+..
T Consensus 222 v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEECTTTCCEEEEEEC
T ss_pred EEEEcCCCceEEEEEEC
Confidence 99999997654 55554
No 30
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.92 E-value=4.2 Score=40.22 Aligned_cols=65 Identities=5% Similarity=0.154 Sum_probs=44.8
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeC---CeEEEEE-eCCeEEEEECCCC
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRN---GEFFLES-SDNRLVLYDSRYE 338 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~---~~i~~~~-~~~~l~~yd~~t~ 338 (362)
+|.+.+++. .+..+.+|.+.. ..+.....+.........+.+.++ +.+++.. .++.+.+||++++
T Consensus 169 d~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 169 ESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp GGCCEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred CCCEEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 356666655 477899999987 567777666544444455566666 6766654 4788999999886
No 31
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=93.87 E-value=2.7 Score=35.77 Aligned_cols=189 Identities=7% Similarity=0.054 Sum_probs=101.6
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
...++++||.++ ...+..... . ..++.+|+..+ ++... ... ..+.+|+..++..+.
T Consensus 49 ~~~i~~~~~~~~-~~~~~~~~~----~------~~~l~~~~dg~---l~v~~---~~~-------~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 49 QNRTWAWSDDGQ-LSPEMHPSH----H------QNGHCLNKQGH---LIACS---HGL-------RRLERQREPGGEWES 104 (296)
T ss_dssp GTEEEEEETTSC-EEEEESSCS----S------EEEEEECTTCC---EEEEE---TTT-------TEEEEECSTTCCEEE
T ss_pred CCEEEEEECCCC-eEEEECCCC----C------cceeeECCCCc---EEEEe---cCC-------CeEEEEcCCCCcEEE
Confidence 567899999988 555443221 1 56788887543 22221 111 367788887777665
Q ss_pred cccC-cccceeecCCCCccEEECceEEEEeec-------------CCCCccEEEEEECCCceeeEecCCCCCCCCCCCCC
Q 041235 196 LEGL-FQMGHYYGSDSTDNVYLNGYCYWVASG-------------HNSYNASILSFSMSDEVFEEIKGPNFPQITTYDES 261 (362)
Q Consensus 196 ~~~~-~~~~~~~~~~~~~~v~~~G~lywl~~~-------------~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~ 261 (362)
.... ...+... ...-.+.-+|.+|+.... .......|..+|.. ++...+.-....
T Consensus 105 ~~~~~~~~~~~~--~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~-------- 173 (296)
T 3e5z_A 105 IADSFEGKKLNS--PNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK-------- 173 (296)
T ss_dssp EECEETTEECCC--CCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS--------
T ss_pred EeeccCCCCCCC--CCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC--------
Confidence 4321 1111000 111122336887664210 00012378999987 555544211111
Q ss_pred CCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcC-Cee-eEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCC
Q 041235 262 EMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKG-GFW-TKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYE 338 (362)
Q Consensus 262 ~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~-~~W-~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~ 338 (362)
. ..++. -+|++. +... ....+.+|.++. ... .....+........-+++..+|.+++.. +..+..||++.+
T Consensus 174 --~-~gi~~s~dg~~l-v~~~-~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~ 247 (296)
T 3e5z_A 174 --P-NGLAFLPSGNLL-VSDT-GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGD 247 (296)
T ss_dssp --E-EEEEECTTSCEE-EEET-TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSC
T ss_pred --C-ccEEECCCCCEE-EEeC-CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCC
Confidence 1 12332 357655 3332 467888888874 554 2222222112233456777788888776 889999999987
Q ss_pred eEEEEEE
Q 041235 339 EIRDLEI 345 (362)
Q Consensus 339 ~~~~i~~ 345 (362)
.++.+..
T Consensus 248 ~~~~~~~ 254 (296)
T 3e5z_A 248 ELGRVLT 254 (296)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 7777654
No 32
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=93.87 E-value=3.1 Score=36.39 Aligned_cols=65 Identities=5% Similarity=0.154 Sum_probs=45.2
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeC---CeEEEEE-eCCeEEEEECCCC
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRN---GEFFLES-SDNRLVLYDSRYE 338 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~---~~i~~~~-~~~~l~~yd~~t~ 338 (362)
+|.+.++.. .+..+.||.+.. ..|.....+........-+.+..+ +.+++.. .++.+.+||++++
T Consensus 171 ~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 171 ESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp TTCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred CCCEEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 466666665 467899999976 667777776644444455566666 6766654 4788999999876
No 33
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=92.90 E-value=4.4 Score=35.32 Aligned_cols=191 Identities=10% Similarity=-0.042 Sum_probs=98.7
Q ss_pred cccEEEee--cCcEEEEeccccce-ecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEE
Q 041235 108 DGIFCFFE--NENIYLWNVSMNEY-RIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVA 184 (362)
Q Consensus 108 ~GLl~~~~--~~~~~v~NP~T~~~-~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 184 (362)
++-+.+.. +..+.|+|+.|++. ..+|... . ..++.+++.. +++... . .. -.+.
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~-----~------p~~i~~~~~g---~lyv~~-~--~~-------~~v~ 108 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRITGFT-----S------PRYIHFLSDE---KAYVTQ-I--WD-------YRIF 108 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEECCS-----S------EEEEEEEETT---EEEEEE-B--SC-------SEEE
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcCCCC-----C------CcEEEEeCCC---eEEEEE-C--CC-------CeEE
Confidence 34444433 46799999999886 4454321 1 4456665432 444332 1 11 3677
Q ss_pred EEEcCCCCce-ecccCccc-ceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCC
Q 041235 185 IYNFSTNSWR-DLEGLFQM-GHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDES 261 (362)
Q Consensus 185 vyss~~~~W~-~~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~ 261 (362)
+++..++.-. .++..... .... + ...+..+|.+|...... ...|.++|+.+.+.. .++.....
T Consensus 109 ~iD~~t~~~~~~i~~g~~~~~~~~--p-~~i~~~~~~lyv~~~~~---~~~v~viD~~t~~~~~~i~~g~~p-------- 174 (328)
T 3dsm_A 109 IINPKTYEITGYIECPDMDMESGS--T-EQMVQYGKYVYVNCWSY---QNRILKIDTETDKVVDELTIGIQP-------- 174 (328)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCB--C-CCEEEETTEEEEEECTT---CCEEEEEETTTTEEEEEEECSSCB--------
T ss_pred EEECCCCeEEEEEEcCCccccCCC--c-ceEEEECCEEEEEcCCC---CCEEEEEECCCCeEEEEEEcCCCc--------
Confidence 8888776432 11111000 0000 1 12233677887775421 238999999987763 45443221
Q ss_pred CCceeEEEEEcCeEEEEEecCC--------CCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEE
Q 041235 262 EMTSWRIGIYDGSLSLLYSEES--------GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLY 333 (362)
Q Consensus 262 ~~~~~~l~~~~g~L~l~~~~~~--------~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~y 333 (362)
......-+|++++++.... ...+.++..+..+-.+...++. ......+++..+++.+++... .++.+
T Consensus 175 ---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~-~v~~~ 249 (328)
T 3dsm_A 175 ---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN-DIWRM 249 (328)
T ss_dssp ---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS-SEEEE
T ss_pred ---cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc-EEEEE
Confidence 0111234688877765320 1455555544344333333321 113455666666665554444 89999
Q ss_pred ECCCCeEE
Q 041235 334 DSRYEEIR 341 (362)
Q Consensus 334 d~~t~~~~ 341 (362)
|++++++.
T Consensus 250 d~~t~~~~ 257 (328)
T 3dsm_A 250 PVEADRVP 257 (328)
T ss_dssp ETTCSSCC
T ss_pred ECCCCcee
Confidence 99988763
No 34
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=92.78 E-value=4.6 Score=35.20 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=81.1
Q ss_pred ccEEEEEcCCCCc-eecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCC
Q 041235 181 LPVAIYNFSTNSW-RDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTY 258 (362)
Q Consensus 181 ~~~~vyss~~~~W-~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~ 258 (362)
-.+.+++..++.- +.++.. ..+. .-.+.-+|.+|..... ...|..+|+.+.+.. .++.+....
T Consensus 64 ~~v~viD~~t~~~~~~i~~~-~~p~------~i~~~~~g~lyv~~~~----~~~v~~iD~~t~~~~~~i~~g~~~~---- 128 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGF-TSPR------YIHFLSDEKAYVTQIW----DYRIFIINPKTYEITGYIECPDMDM---- 128 (328)
T ss_dssp TEEEEEETTTCCEEEEEECC-SSEE------EEEEEETTEEEEEEBS----CSEEEEEETTTTEEEEEEECTTCCT----
T ss_pred CEEEEEECcccEEEEEcCCC-CCCc------EEEEeCCCeEEEEECC----CCeEEEEECCCCeEEEEEEcCCccc----
Confidence 3678888877654 222210 1111 1122368888887632 228999999988764 566554210
Q ss_pred CCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeC-----------
Q 041235 259 DESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSD----------- 327 (362)
Q Consensus 259 ~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~----------- 327 (362)
... ....++..+|+|++.... ....+.++.++.........+.. ....+.+..+|++++....
T Consensus 129 -~~~-~p~~i~~~~~~lyv~~~~-~~~~v~viD~~t~~~~~~i~~g~---~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 129 -ESG-STEQMVQYGKYVYVNCWS-YQNRILKIDTETDKVVDELTIGI---QPTSLVMDKYNKMWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp -TTC-BCCCEEEETTEEEEEECT-TCCEEEEEETTTTEEEEEEECSS---CBCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred -cCC-CcceEEEECCEEEEEcCC-CCCEEEEEECCCCeEEEEEEcCC---CccceEEcCCCCEEEEECCCccCCccccCC
Confidence 000 112334467888777531 25677777665544333332221 1234556677888777543
Q ss_pred CeEEEEECCCCeEE-EEEE
Q 041235 328 NRLVLYDSRYEEIR-DLEI 345 (362)
Q Consensus 328 ~~l~~yd~~t~~~~-~i~~ 345 (362)
..+..+|++++++. .+.+
T Consensus 203 ~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 203 PSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp CEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCCCeEEEEEec
Confidence 58999999999876 4544
No 35
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=92.65 E-value=4.1 Score=34.32 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=102.6
Q ss_pred cccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccE
Q 041235 106 PCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPV 183 (362)
Q Consensus 106 s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 183 (362)
+.+|-+.+.+ +..+.++|+..+....++........ .....++.+++..+. ++... .... ..+
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~----~~~p~~i~~~~~~g~--l~v~~--~~~~-------~~i 102 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQ----LLYPNRVAVVRNSGD--IIVTE--RSPT-------HQI 102 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTC----BSSEEEEEEETTTTE--EEEEE--CGGG-------CEE
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCccc----ccCceEEEEEcCCCe--EEEEc--CCCC-------CEE
Confidence 3456555554 56789999886655555432211000 112566777433332 22221 1111 356
Q ss_pred EEEEcCCCCceecccCcccceeecCCCCccEE--ECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCC
Q 041235 184 AIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVY--LNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDES 261 (362)
Q Consensus 184 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~ 261 (362)
.+|+.....-+..... .. ....++. -+|.+|..... ...|..||...+....+..+...
T Consensus 103 ~~~d~~g~~~~~~~~~-~~------~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~~~~-------- 163 (286)
T 1q7f_A 103 QIYNQYGQFVRKFGAT-IL------QHPRGVTVDNKGRIIVVECK----VMRVIIFDQNGNVLHKFGCSKHL-------- 163 (286)
T ss_dssp EEECTTSCEEEEECTT-TC------SCEEEEEECTTSCEEEEETT----TTEEEEECTTSCEEEEEECTTTC--------
T ss_pred EEECCCCcEEEEecCc-cC------CCceEEEEeCCCCEEEEECC----CCEEEEEcCCCCEEEEeCCCCcc--------
Confidence 7777433322222211 00 0111222 26877665433 23799999877666666443222
Q ss_pred CCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCC--cceeeEEEeeCCeEEEEEe-CC-eEEEEECC
Q 041235 262 EMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFM--EAYQPLGFWRNGEFFLESS-DN-RLVLYDSR 336 (362)
Q Consensus 262 ~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~--~~~~~~~~~~~~~i~~~~~-~~-~l~~yd~~ 336 (362)
. ....++. -+|.|++... ....+.+|..+.. .+..+.... .....+++..+|.+++... +. .+..||.+
T Consensus 164 ~-~p~~i~~~~~g~l~v~~~--~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 164 E-FPNGVVVNDKQEIFISDN--RAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp S-SEEEEEECSSSEEEEEEG--GGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred C-CcEEEEECCCCCEEEEEC--CCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 1 1223333 3578776654 3667888875432 222333211 2234456666788888765 43 89999998
Q ss_pred CCeEEEEEE
Q 041235 337 YEEIRDLEI 345 (362)
Q Consensus 337 t~~~~~i~~ 345 (362)
.+.+..+..
T Consensus 238 g~~~~~~~~ 246 (286)
T 1q7f_A 238 GQLISALES 246 (286)
T ss_dssp SCEEEEEEE
T ss_pred CCEEEEEcc
Confidence 777776654
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=92.49 E-value=5.3 Score=35.23 Aligned_cols=185 Identities=11% Similarity=0.070 Sum_probs=95.9
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.|||..+++....-.... ... ....+.+.+..+.+ ++... .+ -.+.+++..++..+.
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~-h~~------~v~~~~~~~~~~~~-l~s~~----~d-------~~i~iwd~~~~~~~~ 155 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMG-PGD------AITGMKFNQFNTNQ-LFVSS----IR-------GATTLRDFSGSVIQV 155 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCS-TTC------BEEEEEEETTEEEE-EEEEE----TT-------TEEEEEETTSCEEEE
T ss_pred CCeEEEEeCCCcccceeeecCC-cCC------ceeEEEeCCCCCCE-EEEEe----CC-------CEEEEEECCCCceEE
Confidence 5678999999887665433211 111 15566666632222 22221 11 367788877655444
Q ss_pred cccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE-EcCe
Q 041235 196 LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI-YDGS 274 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~ 274 (362)
........... ..-...-+|.....+.. ...|..+|+..+....+..... ....+.- -+|+
T Consensus 156 ~~~~~~~~~~v---~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~h~~-----------~v~~~~~~~~~~ 217 (383)
T 3ei3_B 156 FAKTDSWDYWY---CCVDVSVSRQMLATGDS----TGRLLLLGLDGHEIFKEKLHKA-----------KVTHAEFNPRCD 217 (383)
T ss_dssp EECCCCSSCCE---EEEEEETTTTEEEEEET----TSEEEEEETTSCEEEEEECSSS-----------CEEEEEECSSCT
T ss_pred EeccCCCCCCe---EEEEECCCCCEEEEECC----CCCEEEEECCCCEEEEeccCCC-----------cEEEEEECCCCC
Confidence 33311100000 00111224544333333 2389999997665555543221 1223322 3455
Q ss_pred -EEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEee-CCeEEEEE-eCCeEEEEECCCCeE
Q 041235 275 -LSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWR-NGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 275 -L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~-~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
+.+.+. .+..+.||.+.. ..-..+..+.. ......+.+.. ++..++.. .++.+.+||+++++.
T Consensus 218 ~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 218 WLMATSS--VDATVKLWDLRNIKDKNSYIAEMPH-EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp TEEEEEE--TTSEEEEEEGGGCCSTTCEEEEEEC-SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred CEEEEEe--CCCEEEEEeCCCCCcccceEEEecC-CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 555555 478999999876 11233333332 23344556666 77766654 478999999987643
No 37
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=92.40 E-value=5.5 Score=35.17 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=93.1
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.+||..+++....-+... . ...+.+++..+ + ++... ... -.+.+++..++.-..
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~~----~------~~~~~~s~dg~-~-l~~~~---~~d-------~~i~v~d~~~~~~~~ 68 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVGS----N------PMGAVISPDGT-K-VYVAN---AHS-------NDVSIIDTATNNVIA 68 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSS----S------EEEEEECTTSS-E-EEEEE---GGG-------TEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCeEEEEeecCC----C------cceEEECCCCC-E-EEEEC---CCC-------CeEEEEECCCCeEEE
Confidence 5678999999987654322211 1 45567766433 2 22221 111 467888887764322
Q ss_pred cccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEEE-EcC
Q 041235 196 LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIGI-YDG 273 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~~-~~g 273 (362)
.-.... .. ..-...-+|..-+.+... ...|..+|+.+++... +..... ...+.. -+|
T Consensus 69 ~~~~~~-~v-----~~~~~spdg~~l~~~~~~---~~~v~v~d~~~~~~~~~~~~~~~------------~~~~~~s~dg 127 (391)
T 1l0q_A 69 TVPAGS-SP-----QGVAVSPDGKQVYVTNMA---SSTLSVIDTTSNTVAGTVKTGKS------------PLGLALSPDG 127 (391)
T ss_dssp EEECSS-SE-----EEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSSS------------EEEEEECTTS
T ss_pred EEECCC-Cc-----cceEECCCCCEEEEEECC---CCEEEEEECCCCeEEEEEeCCCC------------cceEEECCCC
Confidence 111000 00 001112245533333322 2389999999876643 332211 123332 356
Q ss_pred eEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEE-EEE-eCCeEEEEECCCCeEEE
Q 041235 274 SLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFF-LES-SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 274 ~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~-~~~-~~~~l~~yd~~t~~~~~ 342 (362)
+..++... ....+.+|.++........... . ....+.+..++..+ +.. .++.+..||+++++...
T Consensus 128 ~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~--~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 128 KKLYVTNN-GDKTVSVINTVTKAVINTVSVG--R-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID 194 (391)
T ss_dssp SEEEEEET-TTTEEEEEETTTTEEEEEEECC--S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CEEEEEeC-CCCEEEEEECCCCcEEEEEecC--C-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 64433332 4679999988764433333222 1 23455566677655 443 36789999999987643
No 38
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=92.23 E-value=4.8 Score=34.14 Aligned_cols=104 Identities=10% Similarity=-0.020 Sum_probs=56.4
Q ss_pred CceEEEEeecCCCCccEEEEEECC-Ccee----eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEE
Q 041235 217 NGYCYWVASGHNSYNASILSFSMS-DEVF----EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWM 291 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~-~~~~----~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~ 291 (362)
+|.++ .+... ...|..||+. +++. +.+.. .. ..........+|.|.+.. ...+.+|.
T Consensus 182 dg~~l-v~~~~---~~~i~~~~~~~~g~~~~~~~~~~~--~~--------~~p~~i~~d~~G~l~v~~----~~~v~~~~ 243 (296)
T 3e5z_A 182 SGNLL-VSDTG---DNATHRYCLNARGETEYQGVHFTV--EP--------GKTDGLRVDAGGLIWASA----GDGVHVLT 243 (296)
T ss_dssp TSCEE-EEETT---TTEEEEEEECSSSCEEEEEEEECC--SS--------SCCCSEEEBTTSCEEEEE----TTEEEEEC
T ss_pred CCCEE-EEeCC---CCeEEEEEECCCCcCcCCCeEeeC--CC--------CCCCeEEECCCCCEEEEc----CCeEEEEC
Confidence 57776 44433 3488899986 4444 12211 11 001111233467777766 34666665
Q ss_pred EcCCeeeEEEEecCCCcceeeEEEe-eCCeEEEEEeCCeEEEEECCCCeEEE
Q 041235 292 MKGGFWTKHLSFGPFMEAYQPLGFW-RNGEFFLESSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 292 l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~i~~~~~~~~l~~yd~~t~~~~~ 342 (362)
.+ ..- +..+..... ...+.+. .++..+++.....++.++++++++++
T Consensus 244 ~~-g~~--~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 244 PD-GDE--LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEH 291 (296)
T ss_dssp TT-SCE--EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC
T ss_pred CC-CCE--EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccccc
Confidence 43 322 222332222 3334443 45666666677899999999998864
No 39
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=91.80 E-value=4.5 Score=35.45 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=66.6
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEec----CCCCCCCCCCCCCCCceeEEE-EEcCeEEEEEecCC-CCEEEEE
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIK----GPNFPQITTYDESEMTSWRIG-IYDGSLSLLYSEES-GHSFSLW 290 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~~~~~~l~-~~~g~L~l~~~~~~-~~~~~iW 290 (362)
+|...+.+... ...|..||+.++..+.+. .|... . ....+. .-+|+..++... . ...+.||
T Consensus 221 dg~~l~v~~~~---~~~v~v~~~~~g~~~~~~~~~~~~~~~--------~-~~~~i~~spdg~~l~v~~~-~~~~~i~v~ 287 (361)
T 3scy_A 221 DGKFAYLINEI---GGTVIAFRYADGMLDEIQTVAADTVNA--------Q-GSGDIHLSPDGKYLYASNR-LKADGVAIF 287 (361)
T ss_dssp TSSEEEEEETT---TCEEEEEEEETTEEEEEEEEESCSSCC--------C-CEEEEEECTTSSEEEEEEC-SSSCEEEEE
T ss_pred CCCEEEEEcCC---CCeEEEEEecCCceEEeEEEecCCCCC--------C-CcccEEECCCCCEEEEECC-CCCCEEEEE
Confidence 67533344322 237888888877765432 22211 1 112333 336775444443 3 6799999
Q ss_pred EEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe--CCeEEE--EECCCCeEEEEE
Q 041235 291 MMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS--DNRLVL--YDSRYEEIRDLE 344 (362)
Q Consensus 291 ~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~--~~~l~~--yd~~t~~~~~i~ 344 (362)
.++. ..+..+..+.. ......+.+..+|+.++... ++.+.+ +|+++++++.+.
T Consensus 288 ~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred EEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 9973 66777666654 23345567777888555443 566655 688888887663
No 40
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=91.71 E-value=6.5 Score=34.72 Aligned_cols=118 Identities=8% Similarity=0.109 Sum_probs=66.5
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCCce--eeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSDEV--FEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFS 288 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 288 (362)
..++..+|.+|..+..+ .|.+||..+++ |+ .+++....... .............+|.+++... ...+.
T Consensus 47 ~~p~v~~~~v~~~~~~g-----~v~a~d~~tG~~~W~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~~~---~g~l~ 116 (376)
T 3q7m_A 47 LHPALADNVVYAADRAG-----LVKALNADDGKEIWS-VSLAEKDGWFS-KEPALLSGGVTVSGGHVYIGSE---KAQVY 116 (376)
T ss_dssp CCCEEETTEEEEECTTS-----EEEEEETTTCCEEEE-EECCC---CCS-CCCCCEEEEEEEETTEEEEEET---TSEEE
T ss_pred eccEEECCEEEEEcCCC-----eEEEEEccCCceeee-ecCcccccccc-ccCcccccCceEeCCEEEEEcC---CCEEE
Confidence 46788999999887665 89999987654 43 33332210000 0011122345666777776653 34555
Q ss_pred EEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEEE
Q 041235 289 LWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 289 iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~i 343 (362)
.+..+. ..|.... +. .....|. + .++.+++...++.++++|.++++..+-
T Consensus 117 a~d~~tG~~~W~~~~--~~-~~~~~p~-~-~~~~v~v~~~~g~l~~~d~~tG~~~W~ 168 (376)
T 3q7m_A 117 ALNTSDGTVAWQTKV--AG-EALSRPV-V-SDGLVLIHTSNGQLQALNEADGAVKWT 168 (376)
T ss_dssp EEETTTCCEEEEEEC--SS-CCCSCCE-E-ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEECCCCCEEEEEeC--CC-ceEcCCE-E-ECCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 554443 4565422 21 1112232 2 356666666688899999999876553
No 41
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=91.30 E-value=5.8 Score=33.21 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=73.6
Q ss_pred EEECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEE
Q 041235 214 VYLNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMM 292 (362)
Q Consensus 214 v~~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l 292 (362)
.+.+|.+|.-++.. ....|..+|+.+++- ..+++|... .-..+...+++|+++.- ....+-++-.
T Consensus 27 ~~~~~~LyestG~~--g~S~v~~vD~~tgkv~~~~~l~~~~----------fgeGi~~~~~~ly~ltw--~~~~v~v~D~ 92 (243)
T 3mbr_X 27 FYLRGHLYESTGET--GRSSVRKVDLETGRILQRAEVPPPY----------FGAGIVAWRDRLIQLTW--RNHEGFVYDL 92 (243)
T ss_dssp EEETTEEEEEECCT--TSCEEEEEETTTCCEEEEEECCTTC----------CEEEEEEETTEEEEEES--SSSEEEEEET
T ss_pred EEECCEEEEECCCC--CCceEEEEECCCCCEEEEEeCCCCc----------ceeEEEEeCCEEEEEEe--eCCEEEEEEC
Confidence 45567777766553 145899999998776 567888654 12345667889999864 3455444444
Q ss_pred cCCeeeEEEEecCCCcceeeEEEeeCC-eEEEEEeCCeEEEEECCCCeE-EEEEE
Q 041235 293 KGGFWTKHLSFGPFMEAYQPLGFWRNG-EFFLESSDNRLVLYDSRYEEI-RDLEI 345 (362)
Q Consensus 293 ~~~~W~~~~~i~~~~~~~~~~~~~~~~-~i~~~~~~~~l~~yd~~t~~~-~~i~~ 345 (362)
..-+.+.+++.. ..+.++..++ .+++...+.++..+|++|.+. +.|.+
T Consensus 93 --~tl~~~~ti~~~---~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 93 --ATLTPRARFRYP---GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp --TTTEEEEEEECS---SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred --CcCcEEEEEeCC---CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 444566666643 2345555555 467776788999999999765 55665
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=91.21 E-value=7.3 Score=34.20 Aligned_cols=194 Identities=14% Similarity=0.068 Sum_probs=92.9
Q ss_pred cccEEEee-cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEE
Q 041235 108 DGIFCFFE-NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIY 186 (362)
Q Consensus 108 ~GLl~~~~-~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 186 (362)
++.++... +..+.|||..+++.............. ....+.+.+.. .+ ++... .+ -.+.++
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~-----~V~~v~~spdg-~~-l~sgs----~d-------~~i~iw 154 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDD-----IVSTVSVLSSG-TQ-AVSGS----KD-------ICIKVW 154 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSS-----CEEEEEECTTS-SE-EEEEE----TT-------SCEEEE
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCC-----CEEEEEECCCC-CE-EEEEe----CC-------CeEEEE
Confidence 44444333 678899999998765443322111111 14566776643 22 33221 11 367788
Q ss_pred EcCCCCceecccCcccceeecCCCCccEE--ECceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCCCC
Q 041235 187 NFSTNSWRDLEGLFQMGHYYGSDSTDNVY--LNGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDESEM 263 (362)
Q Consensus 187 ss~~~~W~~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~ 263 (362)
+..++.= +..... .. ..-..+. -+|.-+.++... ...|..+|+.+.+-. .+..+... .
T Consensus 155 d~~~~~~--~~~~~~---h~--~~V~~~~~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~---------~ 215 (344)
T 4gqb_B 155 DLAQQVV--LSSYRA---HA--AQVTCVAASPHKDSVFLSCSE---DNRILLWDTRCPKPASQIGCSAPG---------Y 215 (344)
T ss_dssp ETTTTEE--EEEECC---CS--SCEEEEEECSSCTTEEEEEET---TSCEEEEETTSSSCEEECC----C---------C
T ss_pred ECCCCcE--EEEEcC---cC--CceEEEEecCCCCCceeeecc---ccccccccccccceeeeeecceee---------c
Confidence 8766521 111000 00 0011121 133212222211 237888999876543 33322211 1
Q ss_pred ceeEEEEE--cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCC-eEEEE-EeCCeEEEEECCCCe
Q 041235 264 TSWRIGIY--DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNG-EFFLE-SSDNRLVLYDSRYEE 339 (362)
Q Consensus 264 ~~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~-~i~~~-~~~~~l~~yd~~t~~ 339 (362)
....+... ++.+.+... .+..+.||.++.. ..+..+........-+.+..++ .++.. ..++.+.+||.++++
T Consensus 216 ~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~~~--~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 216 LPTSLAWHPQQSEVFVFGD--ENGTVSLVDTKST--SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291 (344)
T ss_dssp CEEEEEECSSCTTEEEEEE--TTSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred cceeeeecCCCCcceEEec--cCCcEEEEECCCC--cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence 11223222 345655554 4779999988652 2233333222333445565666 44544 357889999999987
Q ss_pred EEE
Q 041235 340 IRD 342 (362)
Q Consensus 340 ~~~ 342 (362)
+..
T Consensus 292 ~~~ 294 (344)
T 4gqb_B 292 LFR 294 (344)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 43
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=90.98 E-value=6.9 Score=33.50 Aligned_cols=71 Identities=7% Similarity=0.136 Sum_probs=46.2
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe--CCeEEEE--ECCCCeEEEEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS--DNRLVLY--DSRYEEIRDLE 344 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~--~~~l~~y--d~~t~~~~~i~ 344 (362)
+|+..++... ....+.+|.++. ..+..+..+..... ...+.+..+|..++... ++.+.+| |+++++++.+.
T Consensus 241 dg~~l~v~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 241 DGRHLYACDR-TASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp TSSEEEEEET-TTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEec-CCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 4654343332 578999999984 56777766654322 45567777787555443 5777777 77788887765
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=90.75 E-value=3.4 Score=37.53 Aligned_cols=186 Identities=11% Similarity=0.146 Sum_probs=88.2
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.|||..+++...+-.... .... ...+.|.|..+.+ ++... .+ -.+.+++.+++.-+.
T Consensus 141 dg~i~lWd~~~~~~~~~~~~~g-H~~~------V~~l~f~p~~~~~-l~s~s----~D-------~~v~iwd~~~~~~~~ 201 (435)
T 4e54_B 141 GGDIMLWNFGIKDKPTFIKGIG-AGGS------ITGLKFNPLNTNQ-FYASS----ME-------GTTRLQDFKGNILRV 201 (435)
T ss_dssp TSCEEEECSSCCSCCEEECCCS-SSCC------CCEEEECSSCTTE-EEEEC----SS-------SCEEEEETTSCEEEE
T ss_pred CCEEEEEECCCCCceeEEEccC-CCCC------EEEEEEeCCCCCE-EEEEe----CC-------CEEEEeeccCCceeE
Confidence 5688999998886543322111 1111 4567777654443 33221 11 367788877654443
Q ss_pred cccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEE-cCe
Q 041235 196 LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIY-DGS 274 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~-~g~ 274 (362)
........... ..-...-+|.+...+.. ...|..+|+.++....+.. .......+.-. +|.
T Consensus 202 ~~~~~~~~~~~---~~~~~~~~~~~l~~g~~----dg~i~~wd~~~~~~~~~~~-----------h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 202 FASSDTINIWF---CSLDVSASSRMVVTGDN----VGNVILLNMDGKELWNLRM-----------HKKKVTHVALNPCCD 263 (435)
T ss_dssp EECCSSCSCCC---CCEEEETTTTEEEEECS----SSBEEEEESSSCBCCCSBC-----------CSSCEEEEEECTTCS
T ss_pred EeccCCCCccE---EEEEECCCCCEEEEEeC----CCcEeeeccCcceeEEEec-----------ccceEEeeeecCCCc
Confidence 32211100000 01112225554444433 2378888987654322221 11122223222 344
Q ss_pred -EEEEEecCCCCEEEEEEEcCCeeeEEE-EecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeE
Q 041235 275 -LSLLYSEESGHSFSLWMMKGGFWTKHL-SFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 275 -L~l~~~~~~~~~~~iW~l~~~~W~~~~-~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
+.+.+. .+..+.||.+....-.... ...........+++..+|..++.. .++.+.+||.+++..
T Consensus 264 ~~~~s~s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 264 WFLATAS--VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp SEEEEEE--TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred eEEEEec--CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 444444 4678999988661111000 000011112233444567766654 478899999987643
No 45
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=89.51 E-value=10 Score=33.08 Aligned_cols=182 Identities=12% Similarity=0.122 Sum_probs=91.8
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.|||..++++............. ...+.+.|.. .+ ++... .+ -.+.+++..++.++.
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~------v~~~~~sp~g-~~-l~s~s----~D-------~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRT------VRKVAWSPCG-NY-LASAS----FD-------ATTCIWKKNQDDFEC 97 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSC------EEEEEECTTS-SE-EEEEE----TT-------SCEEEEEECCC-EEE
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCc------EEEEEECCCC-CE-EEEEE----CC-------CcEEEEEccCCCeEE
Confidence 567889998887654322111111111 5567777643 33 33221 11 356777777665543
Q ss_pred cccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCce-eeEecCCCCCCCCCCCCCCCceeEEEE-E
Q 041235 196 LEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEV-FEEIKGPNFPQITTYDESEMTSWRIGI-Y 271 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~~~~~~l~~-~ 271 (362)
+....... ..-.++.+ +|.+...+..+ ..|..+|+.++. ...+..-... ......+.- -
T Consensus 98 ~~~~~~h~-----~~v~~v~~sp~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~h--------~~~v~~~~~~p 160 (345)
T 3fm0_A 98 VTTLEGHE-----NEVKSVAWAPSGNLLATCSRD----KSVWVWEVDEEDEYECVSVLNSH--------TQDVKHVVWHP 160 (345)
T ss_dssp EEEECCCS-----SCEEEEEECTTSSEEEEEETT----SCEEEEEECTTSCEEEEEEECCC--------CSCEEEEEECS
T ss_pred EEEccCCC-----CCceEEEEeCCCCEEEEEECC----CeEEEEECCCCCCeEEEEEecCc--------CCCeEEEEECC
Confidence 33210000 00111111 45443333332 268888877542 2222111111 111122222 2
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEEC
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDS 335 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~ 335 (362)
+|.+.+... .+..+.+|.++...|.....+.........+.+..++..++.. .++.+.+||.
T Consensus 161 ~~~~l~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 161 SQELLASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp SSSCEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 566555555 4778999999888888777776444444556666677766654 4677888875
No 46
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=89.40 E-value=9.1 Score=32.44 Aligned_cols=192 Identities=8% Similarity=0.080 Sum_probs=94.2
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..++++||.+++...+..+...... ....++.+|+..+. +.... .. ..+.+|+.. +..+.
T Consensus 45 ~~~i~~~d~~~g~~~~~~~~~~~~~~-----~~~~~i~~~~~~g~--l~v~~----~~-------~~l~~~d~~-g~~~~ 105 (314)
T 1pjx_A 45 AGEILRIDLKTGKKTVICKPEVNGYG-----GIPAGCQCDRDANQ--LFVAD----MR-------LGLLVVQTD-GTFEE 105 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEE-----CCEEEEEECSSSSE--EEEEE----TT-------TEEEEEETT-SCEEE
T ss_pred CCEEEEEeCCCCcEEEEEecccCCCC-----CCCceEEEecCCCc--EEEEE----CC-------CCEEEEeCC-CCEEE
Confidence 56789999999887765431100000 11566777765222 22221 01 245677776 65554
Q ss_pred c-cc-CcccceeecCCCCccEEE--CceEEEEeecCC-----------CCccEEEEEECCCceeeEecCCCCCCCCCCCC
Q 041235 196 L-EG-LFQMGHYYGSDSTDNVYL--NGYCYWVASGHN-----------SYNASILSFSMSDEVFEEIKGPNFPQITTYDE 260 (362)
Q Consensus 196 ~-~~-~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~-----------~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~ 260 (362)
. .. ....+. .....+.+ +|.+|+...... .....|..+|.. ++...+.-. .
T Consensus 106 ~~~~~~~~~~~----~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~------- 171 (314)
T 1pjx_A 106 IAKKDSEGRRM----QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--F------- 171 (314)
T ss_dssp CCSBCTTSCBC----BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--E-------
T ss_pred EEeccCCCccc----cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--C-------
Confidence 4 22 111110 11223333 687766543210 001478899987 555443110 0
Q ss_pred CCCceeEEEE-----EcCe-EEEEEecCCCCEEEEEEEc-CCeeeEEE---EecCCC-cceeeEEEeeCCeEEEEE-eCC
Q 041235 261 SEMTSWRIGI-----YDGS-LSLLYSEESGHSFSLWMMK-GGFWTKHL---SFGPFM-EAYQPLGFWRNGEFFLES-SDN 328 (362)
Q Consensus 261 ~~~~~~~l~~-----~~g~-L~l~~~~~~~~~~~iW~l~-~~~W~~~~---~i~~~~-~~~~~~~~~~~~~i~~~~-~~~ 328 (362)
... ..++. -+|+ |++... ....+.+|.++ +....... .+.... .....+++..+|.+++.. .+.
T Consensus 172 -~~~-~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 172 -QFP-NGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp -SSE-EEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred -CCc-ceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 001 12222 3453 444433 35678888776 34333222 221111 223445566678888775 467
Q ss_pred eEEEEECCCCe-EEEEE
Q 041235 329 RLVLYDSRYEE-IRDLE 344 (362)
Q Consensus 329 ~l~~yd~~t~~-~~~i~ 344 (362)
.+..||+++++ .+.+.
T Consensus 248 ~i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIR 264 (314)
T ss_dssp EEEEECTTCBSCSEEEE
T ss_pred EEEEEcCCCCcEeEEEe
Confidence 89999999554 34443
No 47
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=89.23 E-value=11 Score=33.18 Aligned_cols=195 Identities=9% Similarity=0.068 Sum_probs=94.2
Q ss_pred ecccccEEEee-cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccE
Q 041235 105 GPCDGIFCFFE-NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPV 183 (362)
Q Consensus 105 ~s~~GLl~~~~-~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 183 (362)
...+|.+.+.. +..++.+|+.|++.+.--+........ . .. + +. +|+... .. -.+
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~------p--~~-~---~~-~v~v~~----~~-------g~l 155 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSR------P--VV-S---DG-LVLIHT----SN-------GQL 155 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSC------C--EE-E---TT-EEEEEC----TT-------SEE
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcC------C--EE-E---CC-EEEEEc----CC-------CeE
Confidence 33567776665 567999999998854221111110000 0 01 1 11 233221 11 356
Q ss_pred EEEEcCCC--CceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCce--eeE-ecCCCCCCCCCC
Q 041235 184 AIYNFSTN--SWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEV--FEE-IKGPNFPQITTY 258 (362)
Q Consensus 184 ~vyss~~~--~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~--~~~-i~~P~~~~~~~~ 258 (362)
..|+..++ .|+.......... . ....++..+|.+|.-...+ .+.++|..+++ |+. ...|.... ..
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~-~--~~~~~~~~~~~v~~g~~~g-----~l~~~d~~tG~~~w~~~~~~~~~~~--~~ 225 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSL-R--GESAPTTAFGAAVVGGDNG-----RVSAVLMEQGQMIWQQRISQATGST--EI 225 (376)
T ss_dssp EEEETTTCCEEEEEECCC------C--CCCCCEEETTEEEECCTTT-----EEEEEETTTCCEEEEEECCC---------
T ss_pred EEEECCCCcEEEEEeCCCCceee-c--CCCCcEEECCEEEEEcCCC-----EEEEEECCCCcEEEEEecccCCCCc--cc
Confidence 67776665 5876443211111 0 1245667789888765555 89999987654 432 22232110 00
Q ss_pred CCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECC
Q 041235 259 DESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSR 336 (362)
Q Consensus 259 ~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~ 336 (362)
+.........+..+|.+++... ...+..+..+. ..|... .. .... ..+ .++.+++...++.++++|++
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~~---~g~l~~~d~~tG~~~w~~~--~~---~~~~-~~~-~~~~l~~~~~~g~l~~~d~~ 295 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALAY---NGNLTALDLRSGQIMWKRE--LG---SVND-FIV-DGNRIYLVDQNDRVMALTID 295 (376)
T ss_dssp ----CCCCCCEEETTEEEEECT---TSCEEEEETTTCCEEEEEC--CC---CEEE-EEE-ETTEEEEEETTCCEEEEETT
T ss_pred ccccccCCCcEEECCEEEEEec---CcEEEEEECCCCcEEeecc--CC---CCCC-ceE-ECCEEEEEcCCCeEEEEECC
Confidence 0000001122344666666542 33444444433 345432 11 1111 222 36677777778899999999
Q ss_pred CCeEEEE
Q 041235 337 YEEIRDL 343 (362)
Q Consensus 337 t~~~~~i 343 (362)
+++..+-
T Consensus 296 tG~~~w~ 302 (376)
T 3q7m_A 296 GGVTLWT 302 (376)
T ss_dssp TCCEEEE
T ss_pred CCcEEEe
Confidence 9987654
No 48
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=89.07 E-value=7.5 Score=34.20 Aligned_cols=185 Identities=12% Similarity=0.062 Sum_probs=82.0
Q ss_pred ecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCce
Q 041235 115 ENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWR 194 (362)
Q Consensus 115 ~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~ 194 (362)
.+..+.|||..+++.............. ....+.+.|.. .+ ++... .. -.+.+++..++.-.
T Consensus 113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg-~~-l~sgs----~d-------g~v~iwd~~~~~~~ 174 (357)
T 4g56_B 113 DSGAVELWEILEKESLLVNKFAKYEHDD-----IVKTLSVFSDG-TQ-AVSGG----KD-------FSVKVWDLSQKAVL 174 (357)
T ss_dssp TTSCEEEC--------CCCCEEECCCSS-----CEEEEEECSSS-SE-EEEEE----TT-------SCEEEEETTTTEEE
T ss_pred CCCEEEEeeccccceeEEEeeccCCCCC-----CEEEEEECCCC-CE-EEEEe----CC-------CeEEEEECCCCcEE
Confidence 3678999999988765443322111111 14556676643 22 33221 11 36778887765322
Q ss_pred ec-ccCcccceeecCCCCccEEE--Cce-EEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEE
Q 041235 195 DL-EGLFQMGHYYGSDSTDNVYL--NGY-CYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIG 269 (362)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~ 269 (362)
.. .... ....++.+ +|. +...+.. ...|..+|+.+.+... +..... ......+.
T Consensus 175 ~~~~~h~--------~~v~~v~~s~~~~~~~~s~~~----dg~v~~wd~~~~~~~~~~~~~~~---------~~~v~~v~ 233 (357)
T 4g56_B 175 KSYNAHS--------SEVNCVAACPGKDTIFLSCGE----DGRILLWDTRKPKPATRIDFCAS---------DTIPTSVT 233 (357)
T ss_dssp EEECCCS--------SCEEEEEECTTCSSCEEEEET----TSCEEECCTTSSSCBCBCCCTTC---------CSCEEEEE
T ss_pred EEEcCCC--------CCEEEEEEccCCCceeeeecc----CCceEEEECCCCceeeeeeeccc---------cccccchh
Confidence 11 1100 01111211 222 2222222 2268888887755322 222111 11122222
Q ss_pred EE--cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCC-eEEEE-EeCCeEEEEECCCCeEEE
Q 041235 270 IY--DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNG-EFFLE-SSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 270 ~~--~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~-~i~~~-~~~~~l~~yd~~t~~~~~ 342 (362)
-. ++.+.++.. .+..+.||.+... ..+..+.........+.+..++ .++.. ..++.+.+||.++++...
T Consensus 234 ~sp~~~~~la~g~--~d~~i~~wd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 234 WHPEKDDTFACGD--ETGNVSLVNIKNP--DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR 306 (357)
T ss_dssp ECTTSTTEEEEEE--SSSCEEEEESSCG--GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred hhhcccceEEEee--cccceeEEECCCC--cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence 22 345555544 4678999988762 1222333222223445555555 44544 347889999999987643
No 49
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=88.72 E-value=9.2 Score=31.63 Aligned_cols=193 Identities=13% Similarity=0.047 Sum_probs=93.1
Q ss_pred EEEeecCcEEEEeccc-cceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcC
Q 041235 111 FCFFENENIYLWNVSM-NEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFS 189 (362)
Q Consensus 111 l~~~~~~~~~v~NP~T-~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~ 189 (362)
+.+..+..++++|..+ ++...+...... .. ...+.+.+.. .+ ++......... ..+.+++..
T Consensus 56 l~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~------~~~~~~spdg-~~-l~~~~~~~~~~-------~~l~~~~~~ 118 (297)
T 2ojh_A 56 LLLNSEGLLYRLSLAGDPSPEKVDTGFAT--IC------NNDHGISPDG-AL-YAISDKVEFGK-------SAIYLLPST 118 (297)
T ss_dssp EEEEETTEEEEEESSSCCSCEECCCTTCC--CB------CSCCEECTTS-SE-EEEEECTTTSS-------CEEEEEETT
T ss_pred EEEEcCCeEEEEeCCCCCCceEecccccc--cc------ccceEECCCC-CE-EEEEEeCCCCc-------ceEEEEECC
Confidence 3333466899999999 877766543211 01 2335555543 22 33221101111 466666666
Q ss_pred CCCceecccCcccceeecCCCCccEEECce-EEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE
Q 041235 190 TNSWRDLEGLFQMGHYYGSDSTDNVYLNGY-CYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI 268 (362)
Q Consensus 190 ~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l 268 (362)
++.-+.+..... ... ....-+|. +++..... ....|..+|..+.....+..... ....+
T Consensus 119 ~~~~~~~~~~~~--~~~-----~~~spdg~~l~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~ 178 (297)
T 2ojh_A 119 GGTPRLMTKNLP--SYW-----HGWSPDGKSFTYCGIRD--QVFDIYSMDIDSGVETRLTHGEG-----------RNDGP 178 (297)
T ss_dssp CCCCEECCSSSS--EEE-----EEECTTSSEEEEEEEET--TEEEEEEEETTTCCEEECCCSSS-----------CEEEE
T ss_pred CCceEEeecCCC--ccc-----eEECCCCCEEEEEECCC--CceEEEEEECCCCcceEcccCCC-----------ccccc
Confidence 665444433111 000 01112454 33333322 13466777777666554432211 11122
Q ss_pred E-EEcCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEE-EEeC-----------CeEEEE
Q 041235 269 G-IYDGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFL-ESSD-----------NRLVLY 333 (362)
Q Consensus 269 ~-~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~-----------~~l~~y 333 (362)
. .-+|+..++... ....+.||.++. .. ...+.........+.+..+++.++ ...+ ..+..|
T Consensus 179 ~~s~dg~~l~~~~~-~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~ 254 (297)
T 2ojh_A 179 DYSPDGRWIYFNSS-RTGQMQIWRVRVDGSS---VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM 254 (297)
T ss_dssp EECTTSSEEEEEEC-TTSSCEEEEEETTSSC---EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred eECCCCCEEEEEec-CCCCccEEEECCCCCC---cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence 2 235664444432 356789999873 22 222322222233455556777544 3332 569999
Q ss_pred ECCCCeEEEEE
Q 041235 334 DSRYEEIRDLE 344 (362)
Q Consensus 334 d~~t~~~~~i~ 344 (362)
|+++++.+.+.
T Consensus 255 d~~~~~~~~~~ 265 (297)
T 2ojh_A 255 DMDGGNVETLF 265 (297)
T ss_dssp ETTSCSCEEEE
T ss_pred ecCCCCceeee
Confidence 99998876654
No 50
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=88.09 E-value=11 Score=31.59 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=98.8
Q ss_pred eeecccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCC
Q 041235 103 PLGPCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDL 180 (362)
Q Consensus 103 ~~~s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 180 (362)
+....+|-+.+.. ...+.++||. ++...++.+.. ... ..++..|+..+ +.... ...
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~--~~~------~~~i~~~~~g~---l~v~~---~~~------- 82 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTP--DAK------VMCLIVSSLGD---IWFTE---NGA------- 82 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST--TCC------EEEEEECTTSC---EEEEE---TTT-------
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCC--CCc------ceeEEECCCCC---EEEEe---cCC-------
Confidence 3334456665554 4678999998 76665443211 111 56677776432 22221 111
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTY 258 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~ 258 (362)
-.+..|+.. +.++....+... ....++.. +|.+|+.... ...|..||.. ++...+.+|...
T Consensus 83 ~~v~~~d~~-g~~~~~~~~~~~------~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~~-g~~~~~~~~~~~----- 145 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPLPQPD------SGPYGITEGLNGDIWFTQLN----GDRIGKLTAD-GTIYEYDLPNKG----- 145 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTT------CCEEEEEECSTTCEEEEETT----TTEEEEECTT-SCEEEEECSSTT-----
T ss_pred CeEEEECCC-CCeEEecCCCCC------CCCccceECCCCCEEEEccC----CCeEEEECCC-CCEEEccCCCCC-----
Confidence 346667766 555433221110 01122222 6887665442 2379999998 666666655322
Q ss_pred CCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECC
Q 041235 259 DESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSR 336 (362)
Q Consensus 259 ~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~ 336 (362)
. ....+.. -+|+|++... ....+.++.. +..... ..++........+.+..+|.+++... ...+..||+
T Consensus 146 ---~-~~~~i~~d~~g~l~v~~~--~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~- 216 (300)
T 2qc5_A 146 ---S-YPAFITLGSDNALWFTEN--QNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT- 216 (300)
T ss_dssp ---C-CEEEEEECTTSSEEEEET--TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred ---C-CceeEEECCCCCEEEEec--CCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-
Confidence 1 1223433 4577776654 2344444433 233332 22221112233445555678887765 567999999
Q ss_pred CCeEEEEE
Q 041235 337 YEEIRDLE 344 (362)
Q Consensus 337 t~~~~~i~ 344 (362)
++++..+.
T Consensus 217 ~g~~~~~~ 224 (300)
T 2qc5_A 217 TGEISEYD 224 (300)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEEE
Confidence 56665543
No 51
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=88.01 E-value=8.4 Score=33.12 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=61.9
Q ss_pred ECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecC--CCCEEEEEEE
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEE--SGHSFSLWMM 292 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~--~~~~~~iW~l 292 (362)
-+|.+||..... ..|..||..++++..+..+... ....+.. -+|+|.+..... ....+.+|..
T Consensus 54 ~~g~l~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~----------~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 54 RQGQLFLLDVFE----GNIFKINPETKEIKRPFVSHKA----------NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp TTSCEEEEETTT----CEEEEECTTTCCEEEEEECSSS----------SEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred CCCCEEEEECCC----CEEEEEeCCCCcEEEEeeCCCC----------CcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 368888876543 2799999998887765322111 1223433 367877766532 1134544443
Q ss_pred cCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-------CCeEEEEECCCCeEEEE
Q 041235 293 KGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 293 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-------~~~l~~yd~~t~~~~~i 343 (362)
+...-.....-.........+.+..+|.+++... ...++.+|+++++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 3322211111011112233455666788877654 25799999988777654
No 52
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=87.99 E-value=11 Score=31.80 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=71.7
Q ss_pred EEECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEE
Q 041235 214 VYLNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMM 292 (362)
Q Consensus 214 v~~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l 292 (362)
.+.+|.+|--+... ....|..+|+.+++- ..+++|... .-..+...+++|+++.- ....+-++-.
T Consensus 49 ~~~~~~LyestG~~--g~S~v~~vD~~Tgkv~~~~~l~~~~----------FgeGit~~g~~ly~ltw--~~~~v~v~D~ 114 (262)
T 3nol_A 49 FYRNGYFYESTGLN--GRSSIRKVDIESGKTLQQIELGKRY----------FGEGISDWKDKIVGLTW--KNGLGFVWNI 114 (262)
T ss_dssp EEETTEEEEEEEET--TEEEEEEECTTTCCEEEEEECCTTC----------CEEEEEEETTEEEEEES--SSSEEEEEET
T ss_pred EEECCEEEEECCCC--CCceEEEEECCCCcEEEEEecCCcc----------ceeEEEEeCCEEEEEEe--eCCEEEEEEC
Confidence 34578888777653 145899999998876 557777554 12245667888988864 3455444444
Q ss_pred cCCeeeEEEEecCCCcceeeEEEeeCCe-EEEEEeCCeEEEEECCCCeE-EEEEE
Q 041235 293 KGGFWTKHLSFGPFMEAYQPLGFWRNGE-FFLESSDNRLVLYDSRYEEI-RDLEI 345 (362)
Q Consensus 293 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~~~~~l~~yd~~t~~~-~~i~~ 345 (362)
.+-+.+.+++.. ....++..+++ +++...+.++..+|++|.+. ..|.+
T Consensus 115 --~t~~~~~ti~~~---~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 115 --RNLRQVRSFNYD---GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp --TTCCEEEEEECS---SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred --ccCcEEEEEECC---CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 344456666542 13345555555 55655578899999998655 56665
No 53
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=87.96 E-value=5.6 Score=34.54 Aligned_cols=104 Identities=5% Similarity=-0.080 Sum_probs=60.7
Q ss_pred ccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcc
Q 041235 231 NASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEA 309 (362)
Q Consensus 231 ~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~ 309 (362)
...+..+|..+++++.+...... . ....+ ..-+|+|+++........+.+|.++...+..+..+......
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~--------~-~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~ 87 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAAT--------Q-NPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP 87 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEC--------S-CCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCC
T ss_pred CEEEEEEcCCCCeEEEeeeeecc--------C-CcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCC
Confidence 45688888888888765322111 0 01122 23378865555423457899999977776666654322222
Q ss_pred eeeEEEeeCCeEEE-EE-eCCeEEEEECC-CCeEEEE
Q 041235 310 YQPLGFWRNGEFFL-ES-SDNRLVLYDSR-YEEIRDL 343 (362)
Q Consensus 310 ~~~~~~~~~~~i~~-~~-~~~~l~~yd~~-t~~~~~i 343 (362)
...+++..+|+.++ .. .++.+..||+. +++.+.+
T Consensus 88 p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~ 124 (347)
T 3hfq_A 88 PAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLT 124 (347)
T ss_dssp CSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence 34566677887544 44 36789999985 4455443
No 54
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=87.92 E-value=15 Score=32.99 Aligned_cols=195 Identities=10% Similarity=0.118 Sum_probs=100.2
Q ss_pred cccccEEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEE
Q 041235 106 PCDGIFCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAI 185 (362)
Q Consensus 106 s~~GLl~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 185 (362)
|.+++|-+..+..++|||..|++...+-..... ... ...+.+.+.. .|-+++- .+ -.+.+
T Consensus 114 S~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~-~~~------V~sv~fspdg-~~lasgs-----~D-------g~v~i 173 (420)
T 4gga_A 114 SSGNVLAVALDNSVYLWSASSGDILQLLQMEQP-GEY------ISSVAWIKEG-NYLAVGT-----SS-------AEVQL 173 (420)
T ss_dssp CTTSEEEEEETTEEEEEETTTCCEEEEEECCST-TCC------EEEEEECTTS-SEEEEEE-----TT-------SCEEE
T ss_pred CCCCEEEEEeCCEEEEEECCCCCEEEEEEecCC-CCc------EEEEEECCCC-CEEEEEE-----CC-------CeEEE
Confidence 456777666688999999999987765443221 111 5667777743 3433321 12 46788
Q ss_pred EEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCce
Q 041235 186 YNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTS 265 (362)
Q Consensus 186 yss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~ 265 (362)
++..++.=. ..... .. ....++..+|.+-..+.. ...+..+|..........+.... . ..
T Consensus 174 Wd~~~~~~~--~~~~~---h~--~~v~~~s~~~~~l~sgs~----d~~i~~~d~~~~~~~~~~~~~h~--------~-~~ 233 (420)
T 4gga_A 174 WDVQQQKRL--RNMTS---HS--ARVGSLSWNSYILSSGSR----SGHIHHHDVRVAEHHVATLSGHS--------Q-EV 233 (420)
T ss_dssp EETTTTEEE--EEECC---CS--SCEEEEEEETTEEEEEET----TSEEEEEETTSSSCEEEEEECCS--------S-CE
T ss_pred EEcCCCcEE--EEEeC---CC--CceEEEeeCCCEEEEEeC----CCceeEeeecccceeeEEecccc--------c-ce
Confidence 887765321 11000 00 112344556654444333 23777888776544332222111 1 11
Q ss_pred eEE-EEEcCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeC-CeEEEEE---eCCeEEEEECCCC
Q 041235 266 WRI-GIYDGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRN-GEFFLES---SDNRLVLYDSRYE 338 (362)
Q Consensus 266 ~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~-~~i~~~~---~~~~l~~yd~~t~ 338 (362)
..+ ...+|+..+... .+..+.||.... ..+..+............+..... +.++... .++.+.+||++++
T Consensus 234 ~~~~~~~~g~~l~s~~--~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 234 CGLRWAPDGRHLASGG--NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp EEEEECTTSSEEEEEE--TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred eeeeecCCCCeeeeee--ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence 222 223556555554 477899998876 223222222222222233333333 3454433 2678899999988
Q ss_pred eEEE
Q 041235 339 EIRD 342 (362)
Q Consensus 339 ~~~~ 342 (362)
+...
T Consensus 312 ~~~~ 315 (420)
T 4gga_A 312 ACLS 315 (420)
T ss_dssp EEEE
T ss_pred ccce
Confidence 7644
No 55
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=87.83 E-value=13 Score=32.18 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=48.7
Q ss_pred EEcCe-EEEEEecCCCCEEEEEEEcC-CeeeEEEEecCCCcceeeEEEeeCCeEEEE-Ee-CCeEEEE--ECCCCeEEEE
Q 041235 270 IYDGS-LSLLYSEESGHSFSLWMMKG-GFWTKHLSFGPFMEAYQPLGFWRNGEFFLE-SS-DNRLVLY--DSRYEEIRDL 343 (362)
Q Consensus 270 ~~~g~-L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~-~~-~~~l~~y--d~~t~~~~~i 343 (362)
.-+|+ |++... ....+.+|.++. ..+..+..+.........+.+..+|+.+++ .. ++.+.+| |.++++++.+
T Consensus 248 spdG~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 248 SHDGHFLYVSNR--GYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp CTTSCEEEEEEE--TTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred CCCCCEEEEEeC--CCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 34676 445444 478999999975 566666666532233456777778875544 33 4677777 8888998877
Q ss_pred EE
Q 041235 344 EI 345 (362)
Q Consensus 344 ~~ 345 (362)
.-
T Consensus 326 ~~ 327 (347)
T 3hfq_A 326 QK 327 (347)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 56
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=87.65 E-value=12 Score=31.73 Aligned_cols=111 Identities=7% Similarity=-0.026 Sum_probs=68.7
Q ss_pred ceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCe
Q 041235 218 GYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGF 296 (362)
Q Consensus 218 G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~ 296 (362)
|.+|.-+... ....|..+|+.+++- ..+++|... ....+...+++|++..- ....+.+ .+-..
T Consensus 32 g~Lyvstg~~--~~s~v~~iD~~tg~v~~~i~l~~~~----------fgeGi~~~g~~lyv~t~--~~~~v~v--iD~~t 95 (266)
T 2iwa_A 32 DTLFESTGLY--GRSSVRQVALQTGKVENIHKMDDSY----------FGEGLTLLNEKLYQVVW--LKNIGFI--YDRRT 95 (266)
T ss_dssp TEEEEEECST--TTCEEEEEETTTCCEEEEEECCTTC----------CEEEEEEETTEEEEEET--TCSEEEE--EETTT
T ss_pred CeEEEECCCC--CCCEEEEEECCCCCEEEEEecCCCc----------ceEEEEEeCCEEEEEEe--cCCEEEE--EECCC
Confidence 6777766531 134899999998776 456776543 11234455678888764 3555444 44344
Q ss_pred eeEEEEecCCCcceeeEEEeeCCe-EEEEEeCCeEEEEECCCCeE-EEEEEe
Q 041235 297 WTKHLSFGPFMEAYQPLGFWRNGE-FFLESSDNRLVLYDSRYEEI-RDLEIT 346 (362)
Q Consensus 297 W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~~~~~l~~yd~~t~~~-~~i~~~ 346 (362)
-+.+.+|+.. .....++..+|+ +|+...++.+...|++|.+. +.|.+.
T Consensus 96 ~~v~~~i~~g--~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 96 LSNIKNFTHQ--MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp TEEEEEEECC--SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred CcEEEEEECC--CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEEC
Confidence 4566666532 123455655654 66666678999999999664 566643
No 57
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=87.62 E-value=11 Score=31.39 Aligned_cols=192 Identities=14% Similarity=0.086 Sum_probs=98.0
Q ss_pred cccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccE
Q 041235 106 PCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPV 183 (362)
Q Consensus 106 s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 183 (362)
..+|-+.+.. ...++++||. ++...++.+.. .. ...++.+|+.. . +.... ... -.+
T Consensus 65 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~--~~------~~~~i~~~~~g-~--l~v~~---~~~-------~~i 122 (299)
T 2z2n_A 65 SSDGEVWFTENAANKIGRITKK-GIIKEYTLPNP--DS------APYGITEGPNG-D--IWFTE---MNG-------NRI 122 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEECSST--TC------CEEEEEECTTS-C--EEEEE---TTT-------TEE
T ss_pred CCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCc--CC------CceeeEECCCC-C--EEEEe---cCC-------ceE
Confidence 3466665554 4568899986 55444432211 11 15677777643 2 22211 111 245
Q ss_pred EEEEcCCCCceecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCC
Q 041235 184 AIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDES 261 (362)
Q Consensus 184 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~ 261 (362)
.+|+. ++.......+... ....++.. +|.+|+.... ...|..||. ++++..+..|...
T Consensus 123 ~~~d~-~g~~~~~~~~~~~------~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~~~~~~-------- 182 (299)
T 2z2n_A 123 GRITD-DGKIREYELPNKG------SYPSFITLGSDNALWFTENQ----NNAIGRITE-SGDITEFKIPTPA-------- 182 (299)
T ss_dssp EEECT-TCCEEEEECSSTT------CCEEEEEECTTSCEEEEETT----TTEEEEECT-TCCEEEEECSSTT--------
T ss_pred EEECC-CCCEEEecCCCCC------CCCceEEEcCCCCEEEEeCC----CCEEEEEcC-CCcEEEeeCCCCC--------
Confidence 56665 4444332221110 01122222 5777665443 237999999 7777766555332
Q ss_pred CCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCe
Q 041235 262 EMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEE 339 (362)
Q Consensus 262 ~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~ 339 (362)
. ....+.. -+|.|++... ....+.+|.. +..... ..++........+.+..+|.+++.. ....+..||+ +++
T Consensus 183 ~-~~~~i~~~~~g~l~v~~~--~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 183 S-GPVGITKGNDDALWFVEI--IGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp C-CEEEEEECTTSSEEEEET--TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE
T ss_pred C-cceeEEECCCCCEEEEcc--CCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc
Confidence 1 1223433 3577776654 3456666655 333322 2222111223345555677877776 4688999999 566
Q ss_pred EEEEEE
Q 041235 340 IRDLEI 345 (362)
Q Consensus 340 ~~~i~~ 345 (362)
++.+.+
T Consensus 257 ~~~~~~ 262 (299)
T 2z2n_A 257 IEEYPI 262 (299)
T ss_dssp EEEEEC
T ss_pred eEEEeC
Confidence 665543
No 58
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=87.60 E-value=13 Score=32.01 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=54.0
Q ss_pred cEEEEEECCCceeeEe----cCCCCCCCCCCCCCCCceeEEEEEcCe-EEEEEecCCCCEEEEEEEcC---CeeeEEEEe
Q 041235 232 ASILSFSMSDEVFEEI----KGPNFPQITTYDESEMTSWRIGIYDGS-LSLLYSEESGHSFSLWMMKG---GFWTKHLSF 303 (362)
Q Consensus 232 ~~il~fD~~~~~~~~i----~~P~~~~~~~~~~~~~~~~~l~~~~g~-L~l~~~~~~~~~~~iW~l~~---~~W~~~~~i 303 (362)
..|..||..+.+.+.+ ..|..+ ...-+|+ |++... ....+.++.++. ........+
T Consensus 165 g~v~~~d~~~~~~~~~~~~~~~p~gi--------------a~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~ 228 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKELHVPGGA--------------EVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKI 228 (322)
T ss_dssp EEEEEEETTTTEEEEEEEEESCCCEE--------------EECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEEC
T ss_pred ceEEEEeCCCCEEEEeccCCccCcce--------------EECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeC
Confidence 4799999987766543 233221 1222455 555443 244555555543 333333322
Q ss_pred cCCCcceeeEEEeeCCeEEEEEeC-----------CeEEEEECCCCeEEEEEEe
Q 041235 304 GPFMEAYQPLGFWRNGEFFLESSD-----------NRLVLYDSRYEEIRDLEIT 346 (362)
Q Consensus 304 ~~~~~~~~~~~~~~~~~i~~~~~~-----------~~l~~yd~~t~~~~~i~~~ 346 (362)
.. ...+.+..+|.+++.... ..+..||++.+.++.+...
T Consensus 229 ---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~ 278 (322)
T 2fp8_A 229 ---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP 278 (322)
T ss_dssp ---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECC
T ss_pred ---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECC
Confidence 12 444566667888776533 5699999987777777654
No 59
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=87.31 E-value=16 Score=32.85 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=96.4
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..++++|..|++.+.+..... . ...+.+.|..+ + ++... ...+. ..+.+++..++..+.+
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~----~------~~~~~~spdg~-~-la~~~-~~~g~-------~~i~~~d~~~~~~~~l 262 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPR----H------NGAPAFSPDGS-K-LAFAL-SKTGS-------LNLYVMDLASGQIRQV 262 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSS----C------EEEEEECTTSS-E-EEEEE-CTTSS-------CEEEEEETTTCCEEEC
T ss_pred cEEEEEECCCCcEEEeecCCC----c------ccCEEEcCCCC-E-EEEEE-ecCCC-------ceEEEEECCCCCEEeC
Confidence 379999999998876654321 1 45567766532 2 33221 11111 4678888887766544
Q ss_pred ccCcccceeecCCCCccEEECce-EEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcCe
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGY-CYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDGS 274 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~ 274 (362)
...... . . .....-+|. +++..... ....|..+|+.++....+..... ....+ ..-+|+
T Consensus 263 ~~~~~~-~-~----~~~~spdg~~l~~~s~~~--g~~~i~~~d~~~~~~~~l~~~~~-----------~~~~~~~spdG~ 323 (415)
T 2hqs_A 263 TDGRSN-N-T----EPTWFPDSQNLAFTSDQA--GRPQVYKVNINGGAPQRITWEGS-----------QNQDADVSSDGK 323 (415)
T ss_dssp CCCSSC-E-E----EEEECTTSSEEEEEECTT--SSCEEEEEETTSSCCEECCCSSS-----------EEEEEEECTTSS
T ss_pred cCCCCc-c-c----ceEECCCCCEEEEEECCC--CCcEEEEEECCCCCEEEEecCCC-----------cccCeEECCCCC
Confidence 331110 0 0 011112565 44444322 13478889998876544432211 11122 223566
Q ss_pred EEEEE-ecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEE-EEeCC---eEEEEECCCCeEEEEE
Q 041235 275 LSLLY-SEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFL-ESSDN---RLVLYDSRYEEIRDLE 344 (362)
Q Consensus 275 L~l~~-~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~~---~l~~yd~~t~~~~~i~ 344 (362)
..++. .......+.+|.++..... .+.... ....+.+..+|..++ ...+. .++.+|++++..+.+.
T Consensus 324 ~l~~~~~~~g~~~i~~~d~~~~~~~---~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 324 FMVMVSSNGGQQHIAKQDLATGGVQ---VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp EEEEEEECSSCEEEEEEETTTCCEE---ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred EEEEEECcCCceEEEEEECCCCCEE---EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence 44433 3223356777776654332 222111 234455667777544 43333 7999999988887764
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=86.89 E-value=16 Score=32.40 Aligned_cols=189 Identities=10% Similarity=0.087 Sum_probs=99.9
Q ss_pred cccEEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEE
Q 041235 108 DGIFCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYN 187 (362)
Q Consensus 108 ~GLl~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vys 187 (362)
+.++....+..+.+||..+++...+-.... ... ...+.+.+.. .+-+++. .. -.+.+|+
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~--~~~------v~~v~~s~~~-~~l~~~~-----~d-------g~i~iwd 162 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDE--STY------VASVKWSHDG-SFLSVGL-----GN-------GLVDIYD 162 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCT--TCC------EEEEEECTTS-SEEEEEE-----TT-------SCEEEEE
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCC--CCC------EEEEEECCCC-CEEEEEC-----CC-------CeEEEEE
Confidence 445555557899999999998776544321 111 5667777733 3322221 11 3678888
Q ss_pred cCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeE
Q 041235 188 FSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWR 267 (362)
Q Consensus 188 s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~ 267 (362)
..++.-...-. . .. .....+..+|.....+.. ...|..+|+.+..-....+.... .....
T Consensus 163 ~~~~~~~~~~~--~---~~--~~v~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~ 222 (401)
T 4aez_A 163 VESQTKLRTMA--G---HQ--ARVGCLSWNRHVLSSGSR----SGAIHHHDVRIANHQIGTLQGHS---------SEVCG 222 (401)
T ss_dssp TTTCCEEEEEC--C---CS--SCEEEEEEETTEEEEEET----TSEEEEEETTSSSCEEEEEECCS---------SCEEE
T ss_pred CcCCeEEEEec--C---CC--CceEEEEECCCEEEEEcC----CCCEEEEecccCcceeeEEcCCC---------CCeeE
Confidence 77654321111 0 00 112234445654444443 23899999884332221111111 11222
Q ss_pred EEEE-cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCC-eEEEEEe---CCeEEEEECCCCeEE
Q 041235 268 IGIY-DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNG-EFFLESS---DNRLVLYDSRYEEIR 341 (362)
Q Consensus 268 l~~~-~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~-~i~~~~~---~~~l~~yd~~t~~~~ 341 (362)
+... +|.+.+++. .+..+.||.+... ..+..+.........+.+..++ .++.... ++.+..||+++++..
T Consensus 223 ~~~~~~~~~l~s~~--~d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 223 LAWRSDGLQLASGG--NDNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEECTTSSEEEEEE--TTSCEEEEETTCS--SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred EEEcCCCCEEEEEe--CCCeEEEccCCCC--CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 3222 566666655 4678999998762 2333343223334455555544 4555543 788999999887653
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=86.65 E-value=15 Score=31.77 Aligned_cols=184 Identities=16% Similarity=0.144 Sum_probs=90.5
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.+||..++++..+-.... .... ...+.+.+.. ++ ++... .+ -.+.+|+..++.+..
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~-h~~~------v~~~~~~~~~-~~-l~~~~----~d-------g~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKE-HNGQ------VTGVDWAPDS-NR-IVTCG----TD-------RNAYVWTLKGRTWKP 88 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEEC-CSSC------EEEEEEETTT-TE-EEEEE----TT-------SCEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCCcEEeeeeecC-CCCc------ccEEEEeCCC-CE-EEEEc----CC-------CeEEEEECCCCeeee
Confidence 5678999998885332222111 1111 5567777643 33 22221 11 367888887776654
Q ss_pred cccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCce-e---eEecCCCCCCCCCCCCCCCceeEEE
Q 041235 196 LEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEV-F---EEIKGPNFPQITTYDESEMTSWRIG 269 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~-~---~~i~~P~~~~~~~~~~~~~~~~~l~ 269 (362)
........ .....+.+ +|.....+... ..|..+|+.++. + ..+..+... ....+.
T Consensus 89 ~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~~~----------~i~~~~ 149 (372)
T 1k8k_C 89 TLVILRIN-----RAARCVRWAPNEKKFAVGSGS----RVISICYFEQENDWWVCKHIKKPIRS----------TVLSLD 149 (372)
T ss_dssp EEECCCCS-----SCEEEEEECTTSSEEEEEETT----SSEEEEEEETTTTEEEEEEECTTCCS----------CEEEEE
T ss_pred eEEeecCC-----CceeEEEECCCCCEEEEEeCC----CEEEEEEecCCCcceeeeeeecccCC----------CeeEEE
Confidence 32210000 00111111 45444444332 256677766544 2 222222111 122333
Q ss_pred EE-cCeEEEEEecCCCCEEEEEEEcC---------C-------eeeEEEEecCCCcceeeEEEeeCCeEEEE-EeCCeEE
Q 041235 270 IY-DGSLSLLYSEESGHSFSLWMMKG---------G-------FWTKHLSFGPFMEAYQPLGFWRNGEFFLE-SSDNRLV 331 (362)
Q Consensus 270 ~~-~g~L~l~~~~~~~~~~~iW~l~~---------~-------~W~~~~~i~~~~~~~~~~~~~~~~~i~~~-~~~~~l~ 331 (362)
.. +|.+.++.. .+..+.+|.+.. . .-..+..+.........+.+..++..++. ..++.+.
T Consensus 150 ~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 150 WHPNSVLLAAGS--CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp ECTTSSEEEEEE--TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred EcCCCCEEEEEc--CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEE
Confidence 22 566655555 477899998642 1 12233333322233444555567766554 4578899
Q ss_pred EEECCCCeE
Q 041235 332 LYDSRYEEI 340 (362)
Q Consensus 332 ~yd~~t~~~ 340 (362)
.||+++++.
T Consensus 228 i~d~~~~~~ 236 (372)
T 1k8k_C 228 LADADKKMA 236 (372)
T ss_dssp EEEGGGTTE
T ss_pred EEECCCCce
Confidence 999987654
No 62
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=86.58 E-value=13 Score=31.04 Aligned_cols=188 Identities=14% Similarity=0.190 Sum_probs=96.4
Q ss_pred cccccEEEee---cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCcc
Q 041235 106 PCDGIFCFFE---NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLP 182 (362)
Q Consensus 106 s~~GLl~~~~---~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 182 (362)
..+|-+.+.. +..+.++|+..+....+.... ... ..++.+|+.. . ++... ... -.
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~---~~~------~~~i~~~~~g-~--l~v~~---~~~-------~~ 143 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI---LQH------PRGVTVDNKG-R--IIVVE---CKV-------MR 143 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT---CSC------EEEEEECTTS-C--EEEEE---TTT-------TE
T ss_pred cCCCeEEEEcCCCCCEEEEECCCCcEEEEecCcc---CCC------ceEEEEeCCC-C--EEEEE---CCC-------CE
Confidence 3566665554 467888886544443343211 111 5677788754 2 22221 111 35
Q ss_pred EEEEEcCCCCceecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCC
Q 041235 183 VAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDE 260 (362)
Q Consensus 183 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~ 260 (362)
+.+|+.....-+........ ....++.+ +|.+|..... ...|..||...+....+..+...
T Consensus 144 i~~~~~~g~~~~~~~~~~~~------~~p~~i~~~~~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~g~~------- 206 (286)
T 1q7f_A 144 VIIFDQNGNVLHKFGCSKHL------EFPNGVVVNDKQEIFISDNR----AHCVKVFNYEGQYLRQIGGEGIT------- 206 (286)
T ss_dssp EEEECTTSCEEEEEECTTTC------SSEEEEEECSSSEEEEEEGG----GTEEEEEETTCCEEEEESCTTTS-------
T ss_pred EEEEcCCCCEEEEeCCCCcc------CCcEEEEECCCCCEEEEECC----CCEEEEEcCCCCEEEEEccCCcc-------
Confidence 66777554332222211110 01123333 5787665432 23899999977666666443211
Q ss_pred CCCceeEEEE-EcCeEEEEEecCCCC-EEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCC
Q 041235 261 SEMTSWRIGI-YDGSLSLLYSEESGH-SFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRY 337 (362)
Q Consensus 261 ~~~~~~~l~~-~~g~L~l~~~~~~~~-~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t 337 (362)
. ....++. -+|.|++... ... .+.+|..+. .-...............+++..+|.+++...++.+.+|+...
T Consensus 207 -~-~p~~i~~d~~G~l~v~~~--~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 207 -N-YPIGVGINSNGEILIADN--HNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp -C-SEEEEEECTTCCEEEEEC--SSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred -C-CCcEEEECCCCCEEEEeC--CCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 1 1123433 4678877765 243 788886432 222222222111123346666788888876678898998764
No 63
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=86.38 E-value=14 Score=32.25 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=83.0
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCC-ce
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNS-WR 194 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~-W~ 194 (362)
+..+.|||..++.+..+-.... .... ...+.+.+.. ++ ++... .+ -.+.+|+..++. |+
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~~-h~~~------v~~~~~s~~~-~~-l~s~s----~d-------~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFSD-HDKI------VTCVDWAPKS-NR-IVTCS----QD-------RNAYVYEKRPDGTWK 91 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBCC-CSSC------EEEEEECTTT-CC-EEEEE----TT-------SSEEEC------CCC
T ss_pred CCEEEEEEccCCceEEEEEEec-CCce------EEEEEEeCCC-CE-EEEEe----CC-------CeEEEEEcCCCCcee
Confidence 5678899998875443333221 1111 5567776653 22 22221 11 367888887766 55
Q ss_pred ecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCce----eeEecCCCCCCCCCCCCCCCceeEE
Q 041235 195 DLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEV----FEEIKGPNFPQITTYDESEMTSWRI 268 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~----~~~i~~P~~~~~~~~~~~~~~~~~l 268 (362)
......... .....+.+ +|.....+.. ...|..+|+.++. ...+..|... ....+
T Consensus 92 ~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~h~~----------~v~~~ 152 (377)
T 3dwl_C 92 QTLVLLRLN-----RAATFVRWSPNEDKFAVGSG----ARVISVCYFEQENDWWVSKHLKRPLRS----------TILSL 152 (377)
T ss_dssp CEEECCCCS-----SCEEEEECCTTSSCCEEEES----SSCEEECCC-----CCCCEEECSSCCS----------CEEEE
T ss_pred eeeEecccC-----CceEEEEECCCCCEEEEEec----CCeEEEEEECCcccceeeeEeecccCC----------CeEEE
Confidence 433211100 00011111 3433333322 1268888887765 2334332211 12233
Q ss_pred EE-EcCeEEEEEecCCCCEEEEEEEcC---------Cee-------eEEEEecCCCcceeeEEEeeCCeEEEE-EeCCeE
Q 041235 269 GI-YDGSLSLLYSEESGHSFSLWMMKG---------GFW-------TKHLSFGPFMEAYQPLGFWRNGEFFLE-SSDNRL 330 (362)
Q Consensus 269 ~~-~~g~L~l~~~~~~~~~~~iW~l~~---------~~W-------~~~~~i~~~~~~~~~~~~~~~~~i~~~-~~~~~l 330 (362)
.- -+|++.+... .+..+.+|.+.. ..| ..+..+ .......-+.+..++.+++. ..++.+
T Consensus 153 ~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 153 DWHPNNVLLAAGC--ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EECTTSSEEEEEE--SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEcCCCCEEEEEe--CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 22 2566655555 467899999853 112 222222 11222344555567775554 457889
Q ss_pred EEEECCCCeE
Q 041235 331 VLYDSRYEEI 340 (362)
Q Consensus 331 ~~yd~~t~~~ 340 (362)
.+||+++++.
T Consensus 230 ~iwd~~~~~~ 239 (377)
T 3dwl_C 230 TIAYPSAPEQ 239 (377)
T ss_dssp C-CEECSTTS
T ss_pred EEEECCCCCC
Confidence 9999988753
No 64
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=86.28 E-value=11 Score=32.55 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=58.7
Q ss_pred EEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcce
Q 041235 233 SILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAY 310 (362)
Q Consensus 233 ~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~ 310 (362)
.|..||+.++.+..+ .++... .....+.- -+|++.+... .+..+.+|.++...+.....+.......
T Consensus 31 ~v~i~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v 99 (372)
T 1k8k_C 31 EVHIYEKSGNKWVQVHELKEHN---------GQVTGVDWAPDSNRIVTCG--TDRNAYVWTLKGRTWKPTLVILRINRAA 99 (372)
T ss_dssp EEEEEEEETTEEEEEEEEECCS---------SCEEEEEEETTTTEEEEEE--TTSCEEEEEEETTEEEEEEECCCCSSCE
T ss_pred EEEEEeCCCCcEEeeeeecCCC---------CcccEEEEeCCCCEEEEEc--CCCeEEEEECCCCeeeeeEEeecCCCce
Confidence 788899888865433 222111 12223332 3566666655 4778999999887776666554333334
Q ss_pred eeEEEeeCCeEEEEE-eCCeEEEEECCCCe
Q 041235 311 QPLGFWRNGEFFLES-SDNRLVLYDSRYEE 339 (362)
Q Consensus 311 ~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~ 339 (362)
..+.+..++..++.. .++.+..||++++.
T Consensus 100 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 100 RCVRWAPNEKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp EEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred eEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence 455555667666554 47778888888765
No 65
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=86.23 E-value=15 Score=31.36 Aligned_cols=97 Identities=9% Similarity=0.000 Sum_probs=55.5
Q ss_pred EEEEEECCC-ce--eeEecCCCCCCCCCCCCCCCceeEEEEE--cCeEEEEEecCCCCEEEEEEEcCC--e--eeEEEEe
Q 041235 233 SILSFSMSD-EV--FEEIKGPNFPQITTYDESEMTSWRIGIY--DGSLSLLYSEESGHSFSLWMMKGG--F--WTKHLSF 303 (362)
Q Consensus 233 ~il~fD~~~-~~--~~~i~~P~~~~~~~~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~~--~--W~~~~~i 303 (362)
.|..||+.+ .. ......+... ....+... +|++.++.. .+..+.||.++.. . ......+
T Consensus 171 ~i~i~d~~~~~~~~~~~~~~~~~~----------~i~~i~~~~~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 171 QVQWFRLPLCEDDNGTIEESGLKY----------QIRDVALLPKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp EEEEEESSCCTTCCCEEEECSCSS----------CEEEEEECSGGGCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred eEEEEECCccccccceeeecCCCC----------ceeEEEECCCCCCEEEEEe--cCCcEEEEEEcCCCcccccccceee
Confidence 899999887 33 3333333221 12233333 566666665 4789999998653 1 2223333
Q ss_pred cCCC---------cceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 304 GPFM---------EAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 304 ~~~~---------~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
.... .....+.+..++.+++.. .++.+.+||+++++..
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence 2211 123445556677766554 4788999999988753
No 66
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=85.78 E-value=20 Score=32.32 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=32.6
Q ss_pred CCCEEEEEEEcCCeeeEEEEec-C-CCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEE
Q 041235 283 SGHSFSLWMMKGGFWTKHLSFG-P-FMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIR 341 (362)
Q Consensus 283 ~~~~~~iW~l~~~~W~~~~~i~-~-~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~ 341 (362)
....+.||...... .+..+. + ...+.....+..+|.++....++.+.+||+++++.+
T Consensus 376 ~~~~i~iwd~~~g~--~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 376 ELRTIDVFDGNSGK--MMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEARTR 434 (435)
T ss_dssp CCCCEEEECSSSCC--EEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred CCCEEEEEECCCCc--EEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence 34578999776532 223332 1 122333334566888888777889999999988754
No 67
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=85.71 E-value=19 Score=32.07 Aligned_cols=192 Identities=11% Similarity=0.097 Sum_probs=97.6
Q ss_pred cccccEEEee--cCcEEEEeccccceec-ccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCcc
Q 041235 106 PCDGIFCFFE--NENIYLWNVSMNEYRI-VTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLP 182 (362)
Q Consensus 106 s~~GLl~~~~--~~~~~v~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 182 (362)
+.+|-+++.. +..+.+||+.+++... ++... .. ..++.+++..+ + ++... ... -.
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~----~~------~~~~~~~~~~~-~-l~~~~---~~~-------~~ 235 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG----KW------SKILLYDPIRD-L-VYCSN---WIS-------ED 235 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS----SS------EEEEEEETTTT-E-EEEEE---TTT-------TE
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC----CC------eeEEEEcCCCC-E-EEEEe---cCC-------Cc
Confidence 4456555544 5689999998876543 32111 11 45677777543 2 22221 111 36
Q ss_pred EEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCC----CccEEEEEECCCceeeE-ecCCCCCCCCC
Q 041235 183 VAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNS----YNASILSFSMSDEVFEE-IKGPNFPQITT 257 (362)
Q Consensus 183 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~----~~~~il~fD~~~~~~~~-i~~P~~~~~~~ 257 (362)
+.+|+.+++.....-.....+. .-.+.-+|...+.+..+.. ....|..||+.+.+... +..+...
T Consensus 236 i~~~d~~~~~~~~~~~~~~~~~------~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---- 305 (433)
T 3bws_A 236 ISVIDRKTKLEIRKTDKIGLPR------GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK---- 305 (433)
T ss_dssp EEEEETTTTEEEEECCCCSEEE------EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE----
T ss_pred EEEEECCCCcEEEEecCCCCce------EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc----
Confidence 7888887764422111100000 0111125644444442100 13478899998775533 2222111
Q ss_pred CCCCCCceeEE-EEEcCe-EEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe---------
Q 041235 258 YDESEMTSWRI-GIYDGS-LSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS--------- 326 (362)
Q Consensus 258 ~~~~~~~~~~l-~~~~g~-L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~--------- 326 (362)
..+ ..-+|+ |++... ....+.+|.++.. ..+..+... .....+++..++..++...
T Consensus 306 --------~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~--~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 306 --------RHIVSGNTENKIYVSDM--CCSKIEVYDLKEK--KVQKSIPVF-DKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp --------EEEEECSSTTEEEEEET--TTTEEEEEETTTT--EEEEEEECS-SSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred --------ceEEECCCCCEEEEEec--CCCEEEEEECCCC--cEEEEecCC-CCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 122 223454 544444 5779999998753 233344322 2234566667777555433
Q ss_pred -------CCeEEEEECCCCeEEE
Q 041235 327 -------DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 327 -------~~~l~~yd~~t~~~~~ 342 (362)
++.+..||+++++...
T Consensus 373 ~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp TTSCCSSCCEEEEEETTTTEEEE
T ss_pred cccccccceEEEEEECCCCcEEE
Confidence 2489999999987654
No 68
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=85.45 E-value=18 Score=31.65 Aligned_cols=177 Identities=10% Similarity=0.025 Sum_probs=93.2
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.++|+.+++....-+.+. . ..++.+++..+ +-++.- ... -.+.+|+..++.-..
T Consensus 53 d~~i~v~d~~~~~~~~~~~~~~----~------v~~~~~spdg~-~l~~~~----~~~-------~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 53 SNDVSIIDTATNNVIATVPAGS----S------PQGVAVSPDGK-QVYVTN----MAS-------STLSVIDTTSNTVAG 110 (391)
T ss_dssp GTEEEEEETTTTEEEEEEECSS----S------EEEEEECTTSS-EEEEEE----TTT-------TEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCeEEEEEECCC----C------ccceEECCCCC-EEEEEE----CCC-------CEEEEEECCCCeEEE
Confidence 5689999999988655433221 1 56677777543 222221 111 367888887764322
Q ss_pred cccCcccceeecCCCCccE--EECceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEE-EEE
Q 041235 196 LEGLFQMGHYYGSDSTDNV--YLNGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRI-GIY 271 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l-~~~ 271 (362)
.-.... ...++ .-+|...+++... ...|..+|+.+.+... +..... ...+ ..-
T Consensus 111 ~~~~~~--------~~~~~~~s~dg~~l~~~~~~---~~~v~~~d~~~~~~~~~~~~~~~------------~~~~~~~~ 167 (391)
T 1l0q_A 111 TVKTGK--------SPLGLALSPDGKKLYVTNNG---DKTVSVINTVTKAVINTVSVGRS------------PKGIAVTP 167 (391)
T ss_dssp EEECSS--------SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECCSS------------EEEEEECT
T ss_pred EEeCCC--------CcceEEECCCCCEEEEEeCC---CCEEEEEECCCCcEEEEEecCCC------------cceEEECC
Confidence 111000 01112 2256533333332 3489999998876643 232211 1122 223
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEE-E---eCCeEEEEECCCCeEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLE-S---SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~-~---~~~~l~~yd~~t~~~~ 341 (362)
+|+..++... ....+.+|.+.... .+..+... .....+.+..++..++. . .++.+..||+++++..
T Consensus 168 dg~~l~~~~~-~~~~v~~~d~~~~~--~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 168 DGTKVYVANF-DSMSISVIDTVTNS--VIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp TSSEEEEEET-TTTEEEEEETTTTE--EEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CCCEEEEEeC-CCCEEEEEECCCCe--EEEEEecC-CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 5654433332 46789999886632 23333322 22334555567765544 3 4688999999988653
No 69
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=85.26 E-value=12 Score=30.79 Aligned_cols=107 Identities=8% Similarity=0.079 Sum_probs=60.0
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEE-cCeEEEEEecCCCCEEEEEEEcCC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIY-DGSLSLLYSEESGHSFSLWMMKGG 295 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~iW~l~~~ 295 (362)
+|.+|+....+ .|..||..+.....+..+... ....++.. +|+|++.... ...+.+| +..
T Consensus 77 ~g~l~v~~~~~-----~i~~~d~~~~~~~~~~~~~~~----------~p~~i~~~~~g~l~v~~~~--~~~i~~~--~~~ 137 (270)
T 1rwi_B 77 AGTVYVTDFNN-----RVVTLAAGSNNQTVLPFDGLN----------YPEGLAVDTQGAVYVADRG--NNRVVKL--AAG 137 (270)
T ss_dssp TCCEEEEETTT-----EEEEECTTCSCCEECCCCSCS----------SEEEEEECTTCCEEEEEGG--GTEEEEE--CTT
T ss_pred CCCEEEEcCCC-----EEEEEeCCCceEeeeecCCcC----------CCcceEECCCCCEEEEECC--CCEEEEE--ECC
Confidence 57877765533 799999988766554432211 12234333 6777776542 4455555 332
Q ss_pred eeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEEE
Q 041235 296 FWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 296 ~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~~ 342 (362)
.................+.+..+|.+++... ...+..||++++....
T Consensus 138 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 185 (270)
T 1rwi_B 138 SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV 185 (270)
T ss_dssp CCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE
T ss_pred CceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe
Confidence 2111111111111234456666788777664 5789999998876544
No 70
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=85.01 E-value=17 Score=30.93 Aligned_cols=187 Identities=14% Similarity=0.102 Sum_probs=92.5
Q ss_pred cEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCcc-EEEEEcCCCC-cee
Q 041235 118 NIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLP-VAIYNFSTNS-WRD 195 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~-~~vyss~~~~-W~~ 195 (362)
.+.++|+.+++....-+.. .. ..++.++|..+ + ++... ... .. +.+|+...+. -..
T Consensus 109 ~i~v~d~~~~~~~~~~~~~----~~------~~~~~~spdg~-~-l~~~~--~~~--------~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIP----YD------AVGIAISPNGN-G-LILID--RSS--------ANTVRRFKIDADGVLFD 166 (331)
T ss_dssp EEEEEETTTTEEEEEEECC----TT------EEEEEECTTSS-C-EEEEE--ETT--------TTEEEEEEECTTCCEEE
T ss_pred cEEEEECCCCCeEEEEECC----CC------ccceEECCCCC-E-EEEEe--cCC--------CceEEEEEECCCCcEee
Confidence 7999999988765432221 11 45677877654 3 22221 111 24 6777765432 111
Q ss_pred cccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCcee----eEecCCCCCCCCCCCCCCCceeEEEEE
Q 041235 196 LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVF----EEIKGPNFPQITTYDESEMTSWRIGIY 271 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~----~~i~~P~~~~~~~~~~~~~~~~~l~~~ 271 (362)
... ...+.... ...-.+.-+|...+.+... ...|..||+.+.+. ..++.+... ......-
T Consensus 167 ~~~-~~~~~~~~-~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~~~~~~~~~~~~~~-----------~~~~~sp 230 (331)
T 3u4y_A 167 TGQ-EFISGGTR-PFNITFTPDGNFAFVANLI---GNSIGILETQNPENITLLNAVGTNNLP-----------GTIVVSR 230 (331)
T ss_dssp EEE-EEECSSSS-EEEEEECTTSSEEEEEETT---TTEEEEEECSSTTSCEEEEEEECSSCC-----------CCEEECT
T ss_pred cCC-ccccCCCC-ccceEECCCCCEEEEEeCC---CCeEEEEECCCCcccceeeeccCCCCC-----------ceEEECC
Confidence 100 00000000 0011222367633444332 33799999987664 333322111 1111333
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCC----Cc---ceeeEEEeeCCeEEEE-Ee-CCeEEEEECCCCeEEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPF----ME---AYQPLGFWRNGEFFLE-SS-DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~----~~---~~~~~~~~~~~~i~~~-~~-~~~l~~yd~~t~~~~~ 342 (362)
+|+..++... ....+.+|.++......+..+... .. ....+.+..+++.+++ .. ++.+.+||++++....
T Consensus 231 dg~~l~v~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 231 DGSTVYVLTE-STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp TSSEEEEECS-SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCCEEEEEEc-CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccc
Confidence 6763333322 355677777766544444444321 11 1123577778876544 33 5689999999988776
Q ss_pred E
Q 041235 343 L 343 (362)
Q Consensus 343 i 343 (362)
+
T Consensus 310 ~ 310 (331)
T 3u4y_A 310 V 310 (331)
T ss_dssp C
T ss_pred e
Confidence 5
No 71
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=84.56 E-value=18 Score=30.93 Aligned_cols=201 Identities=9% Similarity=0.006 Sum_probs=99.6
Q ss_pred cccccEEEee--cCcEEEEeccccceec-ccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCcc
Q 041235 106 PCDGIFCFFE--NENIYLWNVSMNEYRI-VTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLP 182 (362)
Q Consensus 106 s~~GLl~~~~--~~~~~v~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 182 (362)
..++.+.+.. +..+.++|+.|++... ++......... .......++.+++..+. ++... .... ..
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~--l~~~~--~~~~-------~~ 165 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE-VRPLQPRELVADDATNT--VYISG--IGKE-------SV 165 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS-CCCCEEEEEEEETTTTE--EEEEE--ESSS-------CE
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc-cCCCCCceEEECCCCCE--EEEEe--cCCC-------ce
Confidence 3344444444 4689999999988643 33321111000 00112456778776542 22221 1112 45
Q ss_pred EEEEEcCCCCcee-cccCcccceeecCCCCccEEECce-EEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCC
Q 041235 183 VAIYNFSTNSWRD-LEGLFQMGHYYGSDSTDNVYLNGY-CYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYD 259 (362)
Q Consensus 183 ~~vyss~~~~W~~-~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~ 259 (362)
+.+++..++.=.. ++..... ...-.+.-+|. +|....++ .|..+|+.+.+.. .++.+..-
T Consensus 166 i~~~d~~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~------ 228 (353)
T 3vgz_A 166 IWVVDGGNIKLKTAIQNTGKM------STGLALDSEGKRLYTTNADG-----ELITIDTADNKILSRKKLLDDG------ 228 (353)
T ss_dssp EEEEETTTTEEEEEECCCCTT------CCCCEEETTTTEEEEECTTS-----EEEEEETTTTEEEEEEECCCSS------
T ss_pred EEEEcCCCCceEEEecCCCCc------cceEEECCCCCEEEEEcCCC-----eEEEEECCCCeEEEEEEcCCCC------
Confidence 7788876642211 1100000 11122333565 44443333 7889999887664 34543221
Q ss_pred CCCCceeEEEE-EcCe-EEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCe-EEEEE-eCCeEEEEEC
Q 041235 260 ESEMTSWRIGI-YDGS-LSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGE-FFLES-SDNRLVLYDS 335 (362)
Q Consensus 260 ~~~~~~~~l~~-~~g~-L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~-~~~~l~~yd~ 335 (362)
.......+.. -+|+ |++... ....+.+|.++..+-.....++ . ...+.+..+++ +++.. .++.+..||+
T Consensus 229 -~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~--~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 229 -KEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVAAP--E--SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp -SCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEECS--S--CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred -CCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEEcC--C--CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 0111122333 3455 544432 4678888887653333323322 1 23456667777 45554 3788999999
Q ss_pred CCCeEEE
Q 041235 336 RYEEIRD 342 (362)
Q Consensus 336 ~t~~~~~ 342 (362)
++++...
T Consensus 302 ~~~~~~~ 308 (353)
T 3vgz_A 302 KSYKVVK 308 (353)
T ss_dssp TTTEEEE
T ss_pred CCCeEEE
Confidence 9887643
No 72
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=83.49 E-value=21 Score=30.65 Aligned_cols=182 Identities=10% Similarity=0.042 Sum_probs=86.5
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.+||..+++...+..... . ...+.+.+..+.-.++... .+ -.+.+|+.+++.-..
T Consensus 107 dg~v~iwd~~~~~~~~~~~~~~----~------v~~~~~~~~~~~~~l~~~~----~d-------g~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQIAQHDA----P------VKTIHWIKAPNYSCVMTGS----WD-------KTLKFWDTRSSNPMM 165 (368)
T ss_dssp TSEEEEEETTTTEEEEEEECSS----C------EEEEEEEECSSCEEEEEEE----TT-------SEEEEECSSCSSCSE
T ss_pred CCcEEEEEcCCCCceeeccccC----c------eEEEEEEeCCCCCEEEEcc----CC-------CcEEEEECCCCcEEE
Confidence 5678999999988776533211 1 4455552221222233221 11 367788876653111
Q ss_pred cccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceee--EecCCCCCCCCCCCCCCCceeEEEEEcC
Q 041235 196 LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFE--EIKGPNFPQITTYDESEMTSWRIGIYDG 273 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~--~i~~P~~~~~~~~~~~~~~~~~l~~~~g 273 (362)
.-.... . ..........+...+.++ .+..||+.+..-. .+..+... ...... ...++
T Consensus 166 ~~~~~~-~------~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~ 224 (368)
T 3mmy_A 166 VLQLPE-R------CYCADVIYPMAVVATAER-----GLIVYQLENQPSEFRRIESPLKH--------QHRCVA-IFKDK 224 (368)
T ss_dssp EEECSS-C------EEEEEEETTEEEEEEGGG-----CEEEEECSSSCEEEEECCCSCSS--------CEEEEE-EEECT
T ss_pred EEecCC-C------ceEEEecCCeeEEEeCCC-----cEEEEEeccccchhhhccccccC--------CCceEE-EcccC
Confidence 100000 0 011122233344444443 7888888765443 33333222 111111 11122
Q ss_pred e----EEEEEecCCCCEEEEEEEcCC-eeeEEEEecCCCc------------ceeeEEEeeCCeEEEEE-eCCeEEEEEC
Q 041235 274 S----LSLLYSEESGHSFSLWMMKGG-FWTKHLSFGPFME------------AYQPLGFWRNGEFFLES-SDNRLVLYDS 335 (362)
Q Consensus 274 ~----L~l~~~~~~~~~~~iW~l~~~-~W~~~~~i~~~~~------------~~~~~~~~~~~~i~~~~-~~~~l~~yd~ 335 (362)
. ..++.. .+..+.||.++.. .-..+..+..... ....+.+..++.+++.. .++.+.+||+
T Consensus 225 ~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 225 QNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp TSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred CCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 1 233333 5789999998772 1111122221110 13344555677666554 5788999999
Q ss_pred CCCeEE
Q 041235 336 RYEEIR 341 (362)
Q Consensus 336 ~t~~~~ 341 (362)
++++..
T Consensus 303 ~~~~~~ 308 (368)
T 3mmy_A 303 DARTKL 308 (368)
T ss_dssp TTTEEE
T ss_pred CCCcEE
Confidence 987653
No 73
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=83.35 E-value=24 Score=31.43 Aligned_cols=193 Identities=11% Similarity=0.075 Sum_probs=95.7
Q ss_pred ceeeecccccEEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCC
Q 041235 101 HNPLGPCDGIFCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDL 180 (362)
Q Consensus 101 ~~~~~s~~GLl~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 180 (362)
+...+. .+.|++.....+...++.+++...+-+.. .. ..++.+|+..+. ++... . ..
T Consensus 81 C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~~~----~~------~~gl~~d~~~~~--ly~~D--~-~~------- 137 (386)
T 3v65_B 81 CKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNL----EN------AIALDFHHRREL--VFWSD--V-TL------- 137 (386)
T ss_dssp EEECSS-CCEEEEECBSCEEEECTTSCCCEEEECSC----SC------EEEEEEETTTTE--EEEEE--T-TT-------
T ss_pred ECCccc-cceeEeecCccceeeccCCCcEEEEecCC----Cc------cEEEEEecCCCe--EEEEe--C-CC-------
Confidence 333344 67777777777888888776655443211 11 678888876553 33321 1 11
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEE---ECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVY---LNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITT 257 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~---~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 257 (362)
-.+..++..++..+.+... .+ ....++. .+|.+||..... ..|..+|+....-+.+. ....
T Consensus 138 ~~I~r~~~~g~~~~~~~~~-~~------~~p~glavd~~~g~lY~~d~~~----~~I~~~~~dg~~~~~l~-~~~l---- 201 (386)
T 3v65_B 138 DRILRANLNGSNVEEVVST-GL------ESPGGLAVDWVHDKLYWTDSGT----SRIEVANLDGAHRKVLL-WQSL---- 201 (386)
T ss_dssp TEEEEEETTSCCEEEEECS-SC------SCCCCEEEETTTTEEEEEETTT----TEEEECBTTSCSCEEEE-CSSC----
T ss_pred CcEEEEecCCCCcEEEEeC-CC------CCccEEEEEeCCCeEEEEcCCC----CeEEEEeCCCCceEEee-cCCC----
Confidence 3566667666544333221 10 1122332 368999987653 37888888765443332 1111
Q ss_pred CCCCCCceeEEEEE--cCeEEEEEecCCCCEEEEEEEcC-CeeeEEEEecCCCcceeeEEEe-eCCeEEEEEe-CCeEEE
Q 041235 258 YDESEMTSWRIGIY--DGSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFGPFMEAYQPLGFW-RNGEFFLESS-DNRLVL 332 (362)
Q Consensus 258 ~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~-~~~~i~~~~~-~~~l~~ 332 (362)
. .-..++.. +|.|+..... . .-.|++.+. .+-.+.. +...-.....+++. .++.||+... ..++..
T Consensus 202 ----~-~P~giavdp~~g~ly~td~~--~-~~~I~r~~~dG~~~~~~-~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~ 272 (386)
T 3v65_B 202 ----E-KPRAIALHPMEGTIYWTDWG--N-TPRIEASSMDGSGRRII-ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 272 (386)
T ss_dssp ----S-CEEEEEEETTTTEEEEEECS--S-SCEEEEEETTSCSCEEE-ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ----C-CCcEEEEEcCCCeEEEeccC--C-CCEEEEEeCCCCCcEEE-EECCCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence 1 12234443 5667766542 2 223444443 2211111 11101112334444 3456666654 566778
Q ss_pred EECCCCeEE
Q 041235 333 YDSRYEEIR 341 (362)
Q Consensus 333 yd~~t~~~~ 341 (362)
+|++....+
T Consensus 273 ~d~dG~~~~ 281 (386)
T 3v65_B 273 ANLDGSHRK 281 (386)
T ss_dssp ECTTSCSCE
T ss_pred EeCCCCeeE
Confidence 887754433
No 74
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=83.25 E-value=21 Score=30.60 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=38.6
Q ss_pred CeEEEEEecCCCCEEEEEEEcC-C-eeeEEEEecCC--CcceeeEEEeeCCeEEEEE-eCCeEEEEECCC
Q 041235 273 GSLSLLYSEESGHSFSLWMMKG-G-FWTKHLSFGPF--MEAYQPLGFWRNGEFFLES-SDNRLVLYDSRY 337 (362)
Q Consensus 273 g~L~l~~~~~~~~~~~iW~l~~-~-~W~~~~~i~~~--~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t 337 (362)
|++.++.. .+..+.||.++. . .......+... .....-+.+..++.+++.. .++.+..||+.+
T Consensus 299 ~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 299 QKMLALGN--QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSEEEEEC--TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEEe--cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 66655554 477899999987 2 22233444432 2334556666777776654 478899999864
No 75
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=83.15 E-value=19 Score=29.97 Aligned_cols=182 Identities=8% Similarity=0.020 Sum_probs=93.5
Q ss_pred ccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEE
Q 041235 107 CDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVA 184 (362)
Q Consensus 107 ~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 184 (362)
.+|-+.+.. ...++++||. ++....+.+.. .. ...++.+|+..+ +.... ... -.+.
T Consensus 113 ~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~--~~------~~~~i~~d~~g~---l~v~~---~~~-------~~i~ 170 (300)
T 2qc5_A 113 LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK--GS------YPAFITLGSDNA---LWFTE---NQN-------NSIG 170 (300)
T ss_dssp STTCEEEEETTTTEEEEECTT-SCEEEEECSST--TC------CEEEEEECTTSS---EEEEE---TTT-------TEEE
T ss_pred CCCCEEEEccCCCeEEEECCC-CCEEEccCCCC--CC------CceeEEECCCCC---EEEEe---cCC-------CeEE
Confidence 356555554 4578888887 66554432111 11 156677777543 22221 111 3456
Q ss_pred EEEcCCCCceecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCC
Q 041235 185 IYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESE 262 (362)
Q Consensus 185 vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~ 262 (362)
+|+. ++.......+.... ...++.. +|.+|+..... ..|..||. ++.+..+.+|... .
T Consensus 171 ~~~~-~g~~~~~~~~~~~~------~~~~i~~d~~g~l~v~~~~~----~~i~~~~~-~g~~~~~~~~~~~--------~ 230 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAA------APVGITSGNDGALWFVEIMG----NKIGRITT-TGEISEYDIPTPN--------A 230 (300)
T ss_dssp EECT-TCCEEEEECSSTTC------CEEEEEECTTSSEEEEETTT----TEEEEECT-TCCEEEEECSSTT--------C
T ss_pred EECC-CCcEEEeeCCCCCC------CcceEEECCCCCEEEEccCC----CEEEEEcC-CCcEEEEECCCCC--------C
Confidence 6666 55554432211111 1123333 57777655432 37999999 6667666666332 1
Q ss_pred CceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECC
Q 041235 263 MTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSR 336 (362)
Q Consensus 263 ~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~ 336 (362)
....+.. -+|.|++... ....+.++..+ .... .+.++........+.+..+|.+++.... ++..||++
T Consensus 231 -~~~~i~~d~~g~l~v~~~--~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 231 -RPHAITAGKNSEIWFTEW--GANQIGRITND-NTIQ-EYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp -CEEEEEECSTTCEEEEET--TTTEEEEECTT-SCEE-EEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred -CceEEEECCCCCEEEecc--CCCeEEEECCC-CcEE-EEECCccCCccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence 1223433 3677777764 34566655542 3222 2223211122344555567888887665 89999886
No 76
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.02 E-value=22 Score=32.04 Aligned_cols=110 Identities=10% Similarity=0.096 Sum_probs=62.0
Q ss_pred ECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCe-EEEEEecCCCCEEEEEEEcC
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGS-LSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~-L~l~~~~~~~~~~~iW~l~~ 294 (362)
-+|.+||..... ..|..+|+.++....+...... .... ..-+|. |+..... ... .||.++.
T Consensus 140 ~~g~lyv~d~~~----~~I~~id~~~g~~~~~~~~~~~----------~~ia-~~~~g~~l~~~d~~-~~~--~I~~~d~ 201 (409)
T 3hrp_A 140 GNNTVLAYQRDD----PRVRLISVDDNKVTTVHPGFKG----------GKPA-VTKDKQRVYSIGWE-GTH--TVYVYMK 201 (409)
T ss_dssp STTEEEEEETTT----TEEEEEETTTTEEEEEEETCCB----------CBCE-ECTTSSEEEEEBSS-TTC--EEEEEEG
T ss_pred CCCCEEEEecCC----CcEEEEECCCCEEEEeeccCCC----------Ccee-EecCCCcEEEEecC-CCc--eEEEEEc
Confidence 478999987642 3899999998877665322111 1111 223444 3333321 222 5666655
Q ss_pred -Ceee--EEEEecC-CCcceeeEEEee-CCeEEEEEeCCeEEEEECCCCeEEEE
Q 041235 295 -GFWT--KHLSFGP-FMEAYQPLGFWR-NGEFFLESSDNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 295 -~~W~--~~~~i~~-~~~~~~~~~~~~-~~~i~~~~~~~~l~~yd~~t~~~~~i 343 (362)
..|. ....+.. .......+.+.. ++.+|+...+++++.||++++....+
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 3443 2222222 122234566666 67788765567899999998876555
No 77
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=82.71 E-value=32 Score=32.33 Aligned_cols=198 Identities=10% Similarity=0.050 Sum_probs=100.7
Q ss_pred ccccEEEee--cCcEEEEeccccceec-ccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccE
Q 041235 107 CDGIFCFFE--NENIYLWNVSMNEYRI-VTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPV 183 (362)
Q Consensus 107 ~~GLl~~~~--~~~~~v~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 183 (362)
-+|.+++.. +..+.|+|+.|++... ++. .. . .+++.++|..+ | ++... . . -.+
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~----~------~~~v~~spdg~-~-l~v~~--~--d-------~~V 202 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GY----A------VHISRMSASGR-Y-LLVIG--R--D-------ARI 202 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-ST----T------EEEEEECTTSC-E-EEEEE--T--T-------SEE
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEec-Cc----c------cceEEECCCCC-E-EEEEC--C--C-------CeE
Confidence 356666665 5689999999987643 221 11 1 45677777543 3 22221 1 1 367
Q ss_pred EEEEc--CCCCceecccCcccceeecCCCCccE--EE----CceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCC-
Q 041235 184 AIYNF--STNSWRDLEGLFQMGHYYGSDSTDNV--YL----NGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFP- 253 (362)
Q Consensus 184 ~vyss--~~~~W~~~~~~~~~~~~~~~~~~~~v--~~----~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~- 253 (362)
.+|+. .++. .+.. ++. + ....++ .- +|..-+.+... ...|..+|..+.+- ..++.+...
T Consensus 203 ~v~D~~~~t~~--~~~~---i~~--g-~~p~~va~sp~~~~dg~~l~v~~~~---~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 203 DMIDLWAKEPT--KVAE---IKI--G-IEARSVESSKFKGYEDRYTIAGAYW---PPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp EEEETTSSSCE--EEEE---EEC--C-SEEEEEEECCSTTCTTTEEEEEEEE---SSEEEEEETTTCCEEEEEECCEECS
T ss_pred EEEECcCCCCc--EEEE---Eec--C-CCcceEEeCCCcCCCCCEEEEEEcc---CCeEEEEeccccccceeecccCccc
Confidence 88887 4432 2211 000 0 001112 22 56543333321 23788999887655 445543211
Q ss_pred CCCCCCCCCCceeEEEEE-cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE--eCCeE
Q 041235 254 QITTYDESEMTSWRIGIY-DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES--SDNRL 330 (362)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~--~~~~l 330 (362)
.-..|. .......+... +|...++... ...++.+|.+.+..-.++..++. ......+++..+|..++.. .++.+
T Consensus 272 ~~~~~~-~~~~v~~i~~s~~~~~~~vs~~-~~g~i~vvd~~~~~~l~~~~i~~-~~~~~~~~~spdg~~l~va~~~~~~v 348 (543)
T 1nir_A 272 DTQTYH-PEPRVAAIIASHEHPEFIVNVK-ETGKVLLVNYKDIDNLTVTSIGA-APFLHDGGWDSSHRYFMTAANNSNKV 348 (543)
T ss_dssp SSCCEE-SCCCEEEEEECSSSSEEEEEET-TTTEEEEEECTTSSSCEEEEEEC-CSSCCCEEECTTSCEEEEEEGGGTEE
T ss_pred Cccccc-cCCceEEEEECCCCCEEEEEEC-CCCeEEEEEecCCCcceeEEecc-CcCccCceECCCCCEEEEEecCCCeE
Confidence 000000 01112233333 3555555543 56788888877622122334432 2234567777888865543 37889
Q ss_pred EEEECCCCeEEE
Q 041235 331 VLYDSRYEEIRD 342 (362)
Q Consensus 331 ~~yd~~t~~~~~ 342 (362)
.++|.+++++..
T Consensus 349 ~v~D~~tg~l~~ 360 (543)
T 1nir_A 349 AVIDSKDRRLSA 360 (543)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEECCCCeEEE
Confidence 999999998754
No 78
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=82.58 E-value=21 Score=30.19 Aligned_cols=109 Identities=6% Similarity=-0.061 Sum_probs=67.6
Q ss_pred EECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEc
Q 041235 215 YLNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMK 293 (362)
Q Consensus 215 ~~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~ 293 (362)
+.+|.+|.-+... ..|..+|+.+++- ..+ +|... .-..+...+++|+++.- ....+ |+.+
T Consensus 62 ~~~~~Ly~stG~~----g~v~~iD~~Tgkv~~~~-l~~~~----------FgeGit~~g~~Ly~ltw--~~~~v--~V~D 122 (268)
T 3nok_A 62 FHQGHFFESTGHQ----GTLRQLSLESAQPVWME-RLGNI----------FAEGLASDGERLYQLTW--TEGLL--FTWS 122 (268)
T ss_dssp EETTEEEEEETTT----TEEEECCSSCSSCSEEE-ECTTC----------CEEEEEECSSCEEEEES--SSCEE--EEEE
T ss_pred EECCEEEEEcCCC----CEEEEEECCCCcEEeEE-CCCCc----------ceeEEEEeCCEEEEEEc--cCCEE--EEEE
Confidence 4467777766654 2499999998776 445 66543 11235566788888754 34444 4444
Q ss_pred CCeeeEEEEecCCCcceeeEEEeeCCe-EEEEEeCCeEEEEECCCCeE-EEEEE
Q 041235 294 GGFWTKHLSFGPFMEAYQPLGFWRNGE-FFLESSDNRLVLYDSRYEEI-RDLEI 345 (362)
Q Consensus 294 ~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~~~~~l~~yd~~t~~~-~~i~~ 345 (362)
-.+-+.+.+++.. ....++..+++ +++...+.++..+|++|.+. +.|.+
T Consensus 123 ~~Tl~~~~ti~~~---~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 123 GMPPQRERTTRYS---GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp TTTTEEEEEEECS---SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CCcCcEEEEEeCC---CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 4444556666542 22344445554 56666689999999999665 55665
No 79
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=82.39 E-value=21 Score=30.09 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=43.3
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
+|++.++.. .+..+.+|.++.........+.........+.+..++..++.. .++.+..||+++++..
T Consensus 108 ~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 176 (337)
T 1gxr_A 108 DGCTLIVGG--EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp TSSEEEEEE--SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEEc--CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Confidence 466555554 4779999999875555555554333334445566677665554 5788999999987654
No 80
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=82.32 E-value=22 Score=30.05 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=45.5
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC-------CeeeEEEEecCCCcceeeEEEeeC--CeEEEE-EeCCeEEEEECCCCe
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG-------GFWTKHLSFGPFMEAYQPLGFWRN--GEFFLE-SSDNRLVLYDSRYEE 339 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~-------~~W~~~~~i~~~~~~~~~~~~~~~--~~i~~~-~~~~~l~~yd~~t~~ 339 (362)
+|.+.+... .+..+.||.++. ..|.....+.........+.+..+ +..++. ..++.+..||+++++
T Consensus 70 d~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 70 YGRIIASAS--YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp GCSEEEEEE--TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred CCCEEEEEc--CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 366666665 478999999976 356777776644444455666666 776655 458889999998764
No 81
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=82.25 E-value=20 Score=34.05 Aligned_cols=122 Identities=8% Similarity=0.066 Sum_probs=63.8
Q ss_pred CccEEECceEEEEee-cCCCCccEEEEEEC-CC--ceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCE
Q 041235 211 TDNVYLNGYCYWVAS-GHNSYNASILSFSM-SD--EVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHS 286 (362)
Q Consensus 211 ~~~v~~~G~lywl~~-~~~~~~~~il~fD~-~~--~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~ 286 (362)
..++..+|.+|..+. .+ .|.++|. .+ +.|+. +++.................++..+|++++... ...
T Consensus 56 ~~P~v~~g~vyv~~~~~~-----~v~AlD~~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~ 126 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAFPN-----NTYALNLNDPGKIVWQH-KPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA---NGH 126 (571)
T ss_dssp SCCEEETTEEEEECSTTT-----CEEEEETTCTTSEEEEE-CCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TSE
T ss_pred cccEEECCEEEEEeCCCC-----EEEEEeCCCCccEEEEE-cCCCCccccccccccccccccEEECCEEEEEeC---CCE
Confidence 457889999999877 55 7999998 54 45553 332211000000000111234556777666543 333
Q ss_pred EEEEEEcC--CeeeEEEEecCCC-cc-eeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEEE
Q 041235 287 FSLWMMKG--GFWTKHLSFGPFM-EA-YQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 287 ~~iW~l~~--~~W~~~~~i~~~~-~~-~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i 343 (362)
+.....+. ..|+....-.... .+ ..|+. .++.+++... +..+++||.+|++..+-
T Consensus 127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 33333333 4576542110000 11 23333 2566666544 57899999999987653
No 82
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=82.16 E-value=17 Score=35.39 Aligned_cols=121 Identities=9% Similarity=0.105 Sum_probs=64.0
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCC--ceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSD--EVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSF 287 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~--~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 287 (362)
..++..+|.+|..+..+ .|.++|..+ +.|+.- ..+...... .........++..+|++++... +..+
T Consensus 60 ~~P~v~~g~vyv~~~~~-----~v~AlD~~tG~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~v~~~---dg~l 129 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSWS-----RVIAVDAASGKELWRYDPEVAKVKART--SCCDAVNRGVALWGDKVYVGTL---DGRL 129 (668)
T ss_dssp CCCEEETTEEEEEEGGG-----EEEEEETTTCCEEEEECCCCCGGGGGG--CTTCSCCCCCEEEBTEEEEECT---TSEE
T ss_pred cCCEEECCEEEEECCCC-----eEEEEECCCChhceEECCCCCcccccc--ccccCCccceEEECCEEEEEcC---CCEE
Confidence 45788999999988766 899999765 456532 222110000 0000111233456777765542 3444
Q ss_pred EEEEEcC--CeeeEEEEecCCCc--ceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEEE
Q 041235 288 SLWMMKG--GFWTKHLSFGPFME--AYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 288 ~iW~l~~--~~W~~~~~i~~~~~--~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i 343 (362)
..+..+. ..|+....-..... ...|+. .++.+++... ++.+++||.+|++..+-
T Consensus 130 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 4444333 56765431110011 123332 3566665433 36899999999987653
No 83
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=81.89 E-value=26 Score=30.76 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=41.4
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCC-eEEEEE-eCCeEEEEECCCCe
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNG-EFFLES-SDNRLVLYDSRYEE 339 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~-~i~~~~-~~~~l~~yd~~t~~ 339 (362)
+|.+.+... .+..+.||.++.. ..+..+.........+.+..++ .+++.. .++.+.+||+++.+
T Consensus 274 ~~~~l~s~~--~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 274 DEHLLLSSG--RDNTVLLWNPESA--EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp CSSCEEEEE--SSSEEEEECSSSC--CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CCCeEEEEe--CCCCEEEeeCCCC--ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 566666665 4778999988653 3444444333334455666666 566654 47889999998765
No 84
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=81.82 E-value=42 Score=33.04 Aligned_cols=109 Identities=10% Similarity=-0.035 Sum_probs=56.4
Q ss_pred CceEEEEee-cCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEE-cCeEEEEEecCCCCEEEEEEEcC
Q 041235 217 NGYCYWVAS-GHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIY-DGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 217 ~G~lywl~~-~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
+|.+ |++. .+ .|..||..++.++.+..|... .......+.+. +|.|.+-.. ... ++.++.
T Consensus 373 ~g~l-Wigt~~~-----Gl~~~~~~~~~~~~~~~~~~~-------~~~~v~~i~~d~~g~lWigt~---~~G--l~~~~~ 434 (781)
T 3v9f_A 373 QGKL-WIGTDGG-----GINVFENGKRVAIYNKENREL-------LSNSVLCSLKDSEGNLWFGTY---LGN--ISYYNT 434 (781)
T ss_dssp TSCE-EEEEBSS-----CEEEEETTEEEEECC-----C-------CCSBEEEEEECTTSCEEEEET---TEE--EEEECS
T ss_pred CCCE-EEEeCCC-----cEEEEECCCCeEEEccCCCCC-------CCcceEEEEECCCCCEEEEec---cCC--EEEEcC
Confidence 3665 5554 33 699999998888766322222 11233445444 677777543 223 344433
Q ss_pred --CeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEEEE
Q 041235 295 --GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 295 --~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~i~ 344 (362)
..+...............+....+|.+++. +...++.||+++++++.+.
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~Gl~~~~~~~~~~~~~~ 485 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-THAGVFVIDLASKKVIHHY 485 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ETTEEEEEESSSSSCCEEE
T ss_pred CCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-ECCceEEEeCCCCeEEecc
Confidence 333322110111122233333445666655 4488999999998876654
No 85
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=81.29 E-value=29 Score=31.21 Aligned_cols=126 Identities=12% Similarity=0.076 Sum_probs=71.9
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEe---cC-CC-CCCCCCCCCCCCceeEEEEEcCeEEEEEecC-----CCCE
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEI---KG-PN-FPQITTYDESEMTSWRIGIYDGSLSLLYSEE-----SGHS 286 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i---~~-P~-~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~-----~~~~ 286 (362)
+|.++|.+..+ .+.++|..++.-..+ .+ .. .. ...|.........+-.-+++|++..... ....
T Consensus 237 dG~~~~vs~~g-----~V~v~d~~~~~~~v~~~~~~~~~~~~-~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 237 AGRLVWPTYTG-----KIHQIDLSSGDAKFLPAVEALTEAER-ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp TTEEEEEBTTS-----EEEEEECTTSSCEECCCEESSCHHHH-HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred CCcEEEEeCCC-----EEEEEECCCCcceeecceeccccccc-cccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence 78999988876 799999987753322 10 00 00 0000011111111111235566665421 2335
Q ss_pred EEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCe-EEEE-Ee-CCeEEEEECCCCeE-EEEEEeccc
Q 041235 287 FSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGE-FFLE-SS-DNRLVLYDSRYEEI-RDLEITGIW 349 (362)
Q Consensus 287 ~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~-~~-~~~l~~yd~~t~~~-~~i~~~~~~ 349 (362)
=.||+++-.+++.+.+|+... -...+.+..+++ .++. .. ++.+.+||..|++. +.|...+.+
T Consensus 311 ~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p 376 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 376 (386)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred CEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC
Confidence 689999887788888876422 123466667775 5544 43 78899999999875 456555543
No 86
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=80.90 E-value=25 Score=29.77 Aligned_cols=102 Identities=8% Similarity=0.006 Sum_probs=60.0
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGG 295 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~ 295 (362)
+|.+||..... ..|..||..++....+..|... ..++. -+|+|.+.. ...+.+|..+..
T Consensus 24 ~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~~~~~------------~~i~~~~dG~l~v~~----~~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIPA----KKVCRWDSFTKQVQRVTMDAPV------------SSVALRQSGGYVATI----GTKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETTT----TEEEEEETTTCCEEEEECSSCE------------EEEEEBTTSSEEEEE----TTEEEEEETTTT
T ss_pred CCEEEEEECCC----CEEEEEECCCCcEEEEeCCCce------------EEEEECCCCCEEEEE----CCeEEEEECCCC
Confidence 47899987653 3899999998887777665433 12333 367755443 345666655545
Q ss_pred eeeEEEEecCCCcc--eeeEEEeeCCeEEEEEe------------CCeEEEEECCCC
Q 041235 296 FWTKHLSFGPFMEA--YQPLGFWRNGEFFLESS------------DNRLVLYDSRYE 338 (362)
Q Consensus 296 ~W~~~~~i~~~~~~--~~~~~~~~~~~i~~~~~------------~~~l~~yd~~t~ 338 (362)
..+.+......... ...+.+..+|.+++... ...++.+|...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 140 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH 140 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC
Confidence 66555544321112 23355566788776542 236888887643
No 87
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=80.05 E-value=28 Score=29.95 Aligned_cols=197 Identities=10% Similarity=0.040 Sum_probs=96.3
Q ss_pred cccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccE
Q 041235 106 PCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPV 183 (362)
Q Consensus 106 s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 183 (362)
+.+|.+.+.+ ...++++||.+++...++... . ..++.+++.. . ++... . ..+
T Consensus 58 ~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~-----~------v~~i~~~~dg-~--l~v~~-----~-------~gl 111 (326)
T 2ghs_A 58 PASGTAWWFNILERELHELHLASGRKTVHALPF-----M------GSALAKISDS-K--QLIAS-----D-------DGL 111 (326)
T ss_dssp TTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS-----C------EEEEEEEETT-E--EEEEE-----T-------TEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEECCC-----c------ceEEEEeCCC-e--EEEEE-----C-------CCE
Confidence 3345554544 467899999998766553211 1 4556666643 2 22221 1 246
Q ss_pred EEEEcCCCCceecccC-cccceeecCCCCccEEECceEEEEeecC--CCCccEEEEEECCCceeeEecCCCCCCCCCCCC
Q 041235 184 AIYNFSTNSWRDLEGL-FQMGHYYGSDSTDNVYLNGYCYWVASGH--NSYNASILSFSMSDEVFEEIKGPNFPQITTYDE 260 (362)
Q Consensus 184 ~vyss~~~~W~~~~~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~--~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~ 260 (362)
.+|+..++..+.+... ...+... ...-.+.-+|.+|.-+... ......|..+| +++...+.- ..
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~--~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~------- 178 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNR--SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DI------- 178 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEE--EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EE-------
T ss_pred EEEECCCCcEEEEeeCCCCCCCCC--CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CC-------
Confidence 7788777776654331 1111000 0011122367765543221 01134788888 455554321 11
Q ss_pred CCCceeEEEE-EcCe-EEEEEecCCCCEEEEEEEc--CC-eee--E-EEEecCCCcceeeEEEeeCCeEEEEEe-CCeEE
Q 041235 261 SEMTSWRIGI-YDGS-LSLLYSEESGHSFSLWMMK--GG-FWT--K-HLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLV 331 (362)
Q Consensus 261 ~~~~~~~l~~-~~g~-L~l~~~~~~~~~~~iW~l~--~~-~W~--~-~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~ 331 (362)
... ..++. -+|+ |++... ....+.+|.++ .. ... + ...+.........+.+..+|.+++... ...+.
T Consensus 179 -~~~-~~i~~s~dg~~lyv~~~--~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 179 -SIP-NSICFSPDGTTGYFVDT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp -SSE-EEEEECTTSCEEEEEET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred -ccc-CCeEEcCCCCEEEEEEC--CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence 001 12322 2554 555433 34567777665 23 221 1 122221112233455556788877654 57899
Q ss_pred EEECCCCeEEEEEE
Q 041235 332 LYDSRYEEIRDLEI 345 (362)
Q Consensus 332 ~yd~~t~~~~~i~~ 345 (362)
.||++.+..+.+..
T Consensus 255 ~~d~~g~~~~~i~~ 268 (326)
T 2ghs_A 255 RYDTDGNHIARYEV 268 (326)
T ss_dssp EECTTCCEEEEEEC
T ss_pred EECCCCCEEEEEEC
Confidence 99997766666653
No 88
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=79.68 E-value=31 Score=30.21 Aligned_cols=184 Identities=9% Similarity=-0.038 Sum_probs=91.1
Q ss_pred cccEEEee-cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEE
Q 041235 108 DGIFCFFE-NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIY 186 (362)
Q Consensus 108 ~GLl~~~~-~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 186 (362)
+|.++... +..+.++|..+++....-.... .. ...+.+.+..+ + ++... .. -.+.+|
T Consensus 217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~---~~------i~~~~~~~~~~-~-l~~~~----~d-------~~i~i~ 274 (425)
T 1r5m_A 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHH---GP------ISVLEFNDTNK-L-LLSAS----DD-------GTLRIW 274 (425)
T ss_dssp TTEEEEECGGGCEEEEETTCSSCSEEECCCS---SC------EEEEEEETTTT-E-EEEEE----TT-------SCEEEE
T ss_pred CCEEEEEcCCCeEEEEEcCCCceeeeeccCC---Cc------eEEEEECCCCC-E-EEEEc----CC-------CEEEEE
Confidence 45544443 6689999998875443221111 11 45667766443 2 33221 11 367788
Q ss_pred EcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCce
Q 041235 187 NFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTS 265 (362)
Q Consensus 187 ss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~ 265 (362)
+..++.-...-....... . .-...-+|.+.-.+.+ ..|..||+.+.+... +..... ..
T Consensus 275 d~~~~~~~~~~~~~~~~i-~----~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~-----------~i 333 (425)
T 1r5m_A 275 HGGNGNSQNCFYGHSQSI-V----SASWVGDDKVISCSMD-----GSVRLWSLKQNTLLALSIVDGV-----------PI 333 (425)
T ss_dssp CSSSBSCSEEECCCSSCE-E----EEEEETTTEEEEEETT-----SEEEEEETTTTEEEEEEECTTC-----------CE
T ss_pred ECCCCccceEecCCCccE-E----EEEECCCCEEEEEeCC-----CcEEEEECCCCcEeEecccCCc-----------cE
Confidence 876643211111000000 0 0111225622222233 389999998766432 222111 11
Q ss_pred eEEEE-EcCeEEEEEecCCCCEEEEEEEcCCe------------------eeEEEEecCCCc--ceeeEEEeeCCeEEEE
Q 041235 266 WRIGI-YDGSLSLLYSEESGHSFSLWMMKGGF------------------WTKHLSFGPFME--AYQPLGFWRNGEFFLE 324 (362)
Q Consensus 266 ~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~------------------W~~~~~i~~~~~--~~~~~~~~~~~~i~~~ 324 (362)
..+.. -+|++.++.. .+..+.||.++... ...+..+..... ....+.+..++..++.
T Consensus 334 ~~~~~s~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAF--MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISV 411 (425)
T ss_dssp EEEEECTTSSEEEEEE--TTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEE
T ss_pred EEEEEcCCCCEEEEEE--CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEE
Confidence 22322 3566655555 46789999987611 113444443222 3455566667776544
Q ss_pred -EeCCeEEEEECC
Q 041235 325 -SSDNRLVLYDSR 336 (362)
Q Consensus 325 -~~~~~l~~yd~~ 336 (362)
..++.+.+||++
T Consensus 412 ~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 412 AYSLQEGSVVAIP 424 (425)
T ss_dssp EESSSCCEEEECC
T ss_pred EecCceEEEEeec
Confidence 457789999986
No 89
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=79.62 E-value=29 Score=29.84 Aligned_cols=96 Identities=17% Similarity=0.294 Sum_probs=60.0
Q ss_pred EEEEEECCCceeeEec-CCCCCCCCCCCCCCCceeEEEEE-c--CeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCc
Q 041235 233 SILSFSMSDEVFEEIK-GPNFPQITTYDESEMTSWRIGIY-D--GSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFME 308 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~-~--g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~ 308 (362)
.|..+|+.++....+. +.... .....+.-. + |.+.+.+. .+..+.||.++...|..+..+.....
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~ 102 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTLTGHE---------GPVWRVDWAHPKFGTILASCS--YDGKVLIWKEENGRWSQIAVHAVHSA 102 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCS---------SCEEEEEECCGGGCSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred cEEEEecCCCcceeeeEecCCC---------CcEEEEEeCCCCCCCEEEEec--cCCEEEEEEcCCCceeEeeeecCCCc
Confidence 6778888765554432 22111 122233332 2 66666665 47799999999888888777764444
Q ss_pred ceeeEEEeeC--CeEEEE-EeCCeEEEEECCCCe
Q 041235 309 AYQPLGFWRN--GEFFLE-SSDNRLVLYDSRYEE 339 (362)
Q Consensus 309 ~~~~~~~~~~--~~i~~~-~~~~~l~~yd~~t~~ 339 (362)
....+.+..+ +.+++. ..++.+.+||++++.
T Consensus 103 ~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 4455566565 666554 458889999998873
No 90
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=79.29 E-value=33 Score=30.30 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=59.8
Q ss_pred cEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEE-EEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcc
Q 041235 232 ASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIG-IYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEA 309 (362)
Q Consensus 232 ~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~ 309 (362)
..|..||+.+.... .+..+.. ...+. .-+|+..++.....+..+.||.+..........+......
T Consensus 284 ~~i~i~d~~~~~~~~~~~~~~~------------v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~ 351 (401)
T 4aez_A 284 KQIHFWNAATGARVNTVDAGSQ------------VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR 351 (401)
T ss_dssp CEEEEEETTTCCEEEEEECSSC------------EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC
T ss_pred CEEEEEECCCCCEEEEEeCCCc------------EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC
Confidence 37889998876543 3332221 12222 2356655554433578999999988666666666543333
Q ss_pred eeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 310 YQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 310 ~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
...+.+..++..++.. .++.+.+||+.+++..
T Consensus 352 v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 352 VLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp CCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 4455666778776655 4788999999987654
No 91
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=79.07 E-value=29 Score=29.44 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=56.3
Q ss_pred cEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEE-EEcCe-EEEEEecC---CCCEEEEEEEcCCeeeEEEEe-cC
Q 041235 232 ASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIG-IYDGS-LSLLYSEE---SGHSFSLWMMKGGFWTKHLSF-GP 305 (362)
Q Consensus 232 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~-L~l~~~~~---~~~~~~iW~l~~~~W~~~~~i-~~ 305 (362)
..|..+|..+++++.+. .... . ..++ .-+|+ |++..... ....+.+|.++.........+ ..
T Consensus 169 ~~v~~~d~~~g~~~~~~-~~~~----------p-~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 236 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA-DLDH----------P-NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV 236 (305)
T ss_dssp EEEEEECSSSCCCEEEE-EESS----------E-EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC
T ss_pred CeEEEEcCCCCcEEEEe-cCCC----------C-cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC
Confidence 47999999888776654 1111 1 1222 23565 55444321 025666666655332221111 11
Q ss_pred CCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEEEEEe
Q 041235 306 FMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRDLEIT 346 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~i~~~ 346 (362)
......-+.+..+|.+++.. ...+..||++.+.+..+...
T Consensus 237 ~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~ 276 (305)
T 3dr2_A 237 PDGLPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPTP 276 (305)
T ss_dssp SSSCCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEEECS
T ss_pred CCCCCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEEECC
Confidence 12223446666778866654 66799999998888877643
No 92
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=79.06 E-value=33 Score=30.09 Aligned_cols=192 Identities=12% Similarity=0.117 Sum_probs=95.3
Q ss_pred ceeeecccccEEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCC
Q 041235 101 HNPLGPCDGIFCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDL 180 (362)
Q Consensus 101 ~~~~~s~~GLl~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 180 (362)
+...+. .+.|++.....+...++.+.....+-+.. .. ..++.+|+..+. ++... . ..
T Consensus 38 C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~~~----~~------~~~l~~d~~~~~--ly~~D--~-~~------- 94 (349)
T 3v64_C 38 CKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNL----EN------AIALDFHHRREL--VFWSD--V-TL------- 94 (349)
T ss_dssp EEESSS-CCEEEEECBSCEEEECTTSCCEEEEECSC----SC------EEEEEEETTTTE--EEEEE--T-TT-------
T ss_pred cccccc-CceeEeecccceEEEeCCCCeeEEeecCC----Cc------eEEEEEeccccE--EEEEe--c-cC-------
Confidence 333344 67777777677888888766554442211 11 678888876553 33321 1 11
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEE---ECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVY---LNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITT 257 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~---~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 257 (362)
-.+..++..++.-+.+... .+ ....++. .+|.+||..... ..|..+|+....-+.+. ....
T Consensus 95 ~~I~r~~~~g~~~~~~~~~-~~------~~p~glavd~~~g~ly~~d~~~----~~I~~~~~dG~~~~~l~-~~~l---- 158 (349)
T 3v64_C 95 DRILRANLNGSNVEEVVST-GL------ESPGGLAVDWVHDKLYWTDSGT----SRIEVANLDGAHRKVLL-WQSL---- 158 (349)
T ss_dssp TEEEEEETTSCSCEEEECS-SC------SCCCEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEE-CTTC----
T ss_pred CceEEEecCCCCceEEEeC-CC------CCccEEEEecCCCeEEEEcCCC----CeEEEEcCCCCceEEEE-eCCC----
Confidence 3556666665543332110 00 1122333 368999987653 38999998865544332 1111
Q ss_pred CCCCCCceeEEEEE--cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceee--EEEee-CCeEEEEEe-CCeEE
Q 041235 258 YDESEMTSWRIGIY--DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQP--LGFWR-NGEFFLESS-DNRLV 331 (362)
Q Consensus 258 ~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~--~~~~~-~~~i~~~~~-~~~l~ 331 (362)
. .-..++.. +|.|+..... ....+....++.. -.+ .+- ......| +++.. ++.+|+... ..++.
T Consensus 159 ----~-~P~~iavdp~~g~ly~td~~-~~~~I~r~~~dG~-~~~--~~~-~~~~~~PnGla~d~~~~~lY~aD~~~~~I~ 228 (349)
T 3v64_C 159 ----E-KPRAIALHPMEGTIYWTDWG-NTPRIEASSMDGS-GRR--IIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 228 (349)
T ss_dssp ----S-CEEEEEEETTTTEEEEEECS-SSCEEEEEETTSC-SCE--ESC-CSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ----C-CcceEEEecCcCeEEEeccC-CCCEEEEEeCCCC-CcE--EEE-ECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence 1 12234443 5667766542 1133333333321 111 111 1122333 44443 456666654 56788
Q ss_pred EEECCCCeEE
Q 041235 332 LYDSRYEEIR 341 (362)
Q Consensus 332 ~yd~~t~~~~ 341 (362)
.+|++....+
T Consensus 229 ~~~~dG~~~~ 238 (349)
T 3v64_C 229 RANLDGSHRK 238 (349)
T ss_dssp EEETTSCSCE
T ss_pred EEeCCCCceE
Confidence 8887764433
No 93
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=78.75 E-value=15 Score=35.72 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=64.7
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCCc--eeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSDE--VFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFS 288 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 288 (362)
..++..+|.+|..+..+ .|.++|..++ .|+. +.+.................++..+|+|++... +..+.
T Consensus 71 ~~P~v~~g~vyv~~~~~-----~v~AlD~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---dg~l~ 141 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASWS-----VVHAIDTRTGNRIWTY-DPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---DGRLI 141 (677)
T ss_dssp CCCEEETTEEEEECGGG-----CEEEEETTTTEEEEEE-CCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---TSEEE
T ss_pred eCCEEECCEEEEECCCC-----eEEEEECCCCcEEEEE-cCCCCccccccccccCCCCCceEECCEEEEEcC---CCEEE
Confidence 45688999999988765 7999998764 4543 222111000000000111234556777766543 34454
Q ss_pred EEEEcC--CeeeEEEEecCC--Cc-ceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEEE
Q 041235 289 LWMMKG--GFWTKHLSFGPF--ME-AYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 289 iW~l~~--~~W~~~~~i~~~--~~-~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i 343 (362)
.+..+. ..|+........ .. ...|+. .++.+++... ++.+.+||.+|++..+-
T Consensus 142 alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred EEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 444443 456653210100 01 123332 2566666543 47899999999987653
No 94
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=78.55 E-value=52 Score=32.14 Aligned_cols=180 Identities=12% Similarity=0.137 Sum_probs=92.3
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.|||..+++....-.... .. ...+.+.+..+ + ++... .. -.+.+|+..++ |..
T Consensus 76 dg~i~vw~~~~~~~~~~~~~~~---~~------v~~~~~s~~~~-~-l~~~~----~d-------g~i~vw~~~~~-~~~ 132 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFEAHP---DY------IRSIAVHPTKP-Y-VLSGS----DD-------LTVKLWNWENN-WAL 132 (814)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SC------EEEEEECSSSS-E-EEEEE----TT-------SEEEEEEGGGT-SEE
T ss_pred CCeEEEEECCCCcEEEEEecCC---CC------EEEEEEeCCCC-E-EEEEc----CC-------CEEEEEECCCC-ceE
Confidence 6789999998887654322111 11 45566666432 2 33221 11 36778887654 222
Q ss_pred cccCcccceeecCCCCccEEE---CceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEEEE
Q 041235 196 LEGLFQMGHYYGSDSTDNVYL---NGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIGIY 271 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~~~ 271 (362)
........ ....++.+ +|.....+... ..|..+|+.+..-. .+..+... ....+.-.
T Consensus 133 ~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~~d----g~v~vwd~~~~~~~~~~~~~~~~----------~v~~~~~~ 193 (814)
T 3mkq_A 133 EQTFEGHE-----HFVMCVAFNPKDPSTFASGCLD----RTVKVWSLGQSTPNFTLTTGQER----------GVNYVDYY 193 (814)
T ss_dssp EEEEECCS-----SCEEEEEEETTEEEEEEEEETT----SEEEEEETTCSSCSEEEECCCTT----------CCCEEEEC
T ss_pred EEEEcCCC-----CcEEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCcceeEEecCCCC----------CEEEEEEE
Confidence 21100000 00112222 45444444432 27999998765442 22222111 11122222
Q ss_pred ---cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEE
Q 041235 272 ---DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIR 341 (362)
Q Consensus 272 ---~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~ 341 (362)
+|.+.++.. .+..+.+|.+.... .+..+.........+.+.+++.+++... ++.+..||+.+++..
T Consensus 194 ~~~~~~~l~~~~--~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 194 PLPDKPYMITAS--DDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp CSTTCCEEEEEC--TTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred ECCCCCEEEEEe--CCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 566555554 47799999886632 3333332233344556667777666554 788999999986643
No 95
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=77.99 E-value=30 Score=29.12 Aligned_cols=186 Identities=12% Similarity=0.156 Sum_probs=92.6
Q ss_pred ecCcEEEEeccccceec-ccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCc
Q 041235 115 ENENIYLWNVSMNEYRI-VTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSW 193 (362)
Q Consensus 115 ~~~~~~v~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W 193 (362)
.+..+.+||..+++... +......... .....+.+.+.. ++ ++... .. -.+.+|+..++..
T Consensus 70 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~-~~-l~~~~----~d-------~~i~~~d~~~~~~ 131 (337)
T 1gxr_A 70 GKGCVKVWDISHPGNKSPVSQLDCLNRD-----NYIRSCKLLPDG-CT-LIVGG----EA-------STLSIWDLAAPTP 131 (337)
T ss_dssp CBSEEEEEETTSTTCCSCSEEEECSCTT-----SBEEEEEECTTS-SE-EEEEE----SS-------SEEEEEECCCC--
T ss_pred CCCeEEEEECCCCCceeeeecccccCCC-----CcEEEEEEcCCC-CE-EEEEc----CC-------CcEEEEECCCCCc
Confidence 36678899987765321 1111100011 115566776643 22 22221 11 4678888888765
Q ss_pred eecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEEE
Q 041235 194 RDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIGI 270 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~~ 270 (362)
.......... .....+.+ +|.....+... ..|..+|+.+.+... +..... ....+..
T Consensus 132 ~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~d----g~v~~~d~~~~~~~~~~~~~~~-----------~i~~~~~ 191 (337)
T 1gxr_A 132 RIKAELTSSA-----PACYALAISPDSKVCFSCCSD----GNIAVWDLHNQTLVRQFQGHTD-----------GASCIDI 191 (337)
T ss_dssp EEEEEEECSS-----SCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEECCCSS-----------CEEEEEE
T ss_pred ceeeecccCC-----CceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCceeeeeecccC-----------ceEEEEE
Confidence 4332200000 00011111 45444444332 278899998765432 332111 1223322
Q ss_pred E-cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEEE
Q 041235 271 Y-DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 271 ~-~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~i 343 (362)
. +|++.++.. .+..+.+|.++... .+..+... .....+.+..++..++.. .++.+..||+++++...+
T Consensus 192 ~~~~~~l~~~~--~dg~i~~~d~~~~~--~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 192 SNDGTKLWTGG--LDNTVRSWDLREGR--QLQQHDFT-SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp CTTSSEEEEEE--TTSEEEEEETTTTE--EEEEEECS-SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred CCCCCEEEEEe--cCCcEEEEECCCCc--eEeeecCC-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 2 566655555 47789999987632 22223221 223445555677766554 478899999998775443
No 96
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=77.95 E-value=33 Score=29.52 Aligned_cols=105 Identities=10% Similarity=0.118 Sum_probs=59.7
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcCC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKGG 295 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~~ 295 (362)
+|.+||....+ ..|..+|..++..+.+..|... ..+ ..-+|++.+.. ...+.+|..+..
T Consensus 60 ~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~~~~v------------~~i~~~~dg~l~v~~----~~gl~~~d~~~g 119 (326)
T 2ghs_A 60 SGTAWWFNILE----RELHELHLASGRKTVHALPFMG------------SALAKISDSKQLIAS----DDGLFLRDTATG 119 (326)
T ss_dssp TTEEEEEEGGG----TEEEEEETTTTEEEEEECSSCE------------EEEEEEETTEEEEEE----TTEEEEEETTTC
T ss_pred CCEEEEEECCC----CEEEEEECCCCcEEEEECCCcc------------eEEEEeCCCeEEEEE----CCCEEEEECCCC
Confidence 37899987653 3899999999887776665332 122 34578876654 223444444345
Q ss_pred eeeEEEEecCCC--cceeeEEEeeCCeEEEEEe-------CCeEEEEECCCCeEEEE
Q 041235 296 FWTKHLSFGPFM--EAYQPLGFWRNGEFFLESS-------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 296 ~W~~~~~i~~~~--~~~~~~~~~~~~~i~~~~~-------~~~l~~yd~~t~~~~~i 343 (362)
....+....... .....+.+..+|.+++... ...++.|| +++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 444433221111 1123345556777776543 25688888 5666544
No 97
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=77.83 E-value=27 Score=28.53 Aligned_cols=192 Identities=9% Similarity=0.026 Sum_probs=91.9
Q ss_pred eeecccccEEE-ee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccC
Q 041235 103 PLGPCDGIFCF-FE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHD 179 (362)
Q Consensus 103 ~~~s~~GLl~~-~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~ 179 (362)
+.-+.+|-+.+ .+ ...+.++|+.++....++.... .. ..++.+|+..+ ++... . .
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~------p~~i~~~~~g~---l~v~~--~--~------ 86 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL---YQ------PQGLAVDGAGT---VYVTD--F--N------ 86 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC---CS------CCCEEECTTCC---EEEEE--T--T------
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc---CC------cceeEECCCCC---EEEEc--C--C------
Confidence 33344565555 42 4678899998877655543221 11 45577777532 22221 1 1
Q ss_pred CccEEEEEcCCCCceecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCC
Q 041235 180 LLPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITT 257 (362)
Q Consensus 180 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 257 (362)
-.+.+|+..++.-...... .. ....++.+ +|.+|+.... ...|..||..+......... ..
T Consensus 87 -~~i~~~d~~~~~~~~~~~~-~~------~~p~~i~~~~~g~l~v~~~~----~~~i~~~~~~~~~~~~~~~~-~~---- 149 (270)
T 1rwi_B 87 -NRVVTLAAGSNNQTVLPFD-GL------NYPEGLAVDTQGAVYVADRG----NNRVVKLAAGSKTQTVLPFT-GL---- 149 (270)
T ss_dssp -TEEEEECTTCSCCEECCCC-SC------SSEEEEEECTTCCEEEEEGG----GTEEEEECTTCCSCEECCCC-SC----
T ss_pred -CEEEEEeCCCceEeeeecC-Cc------CCCcceEECCCCCEEEEECC----CCEEEEEECCCceeEeeccc-cC----
Confidence 3566777666543332211 00 01112222 6887765443 23788888766544332111 11
Q ss_pred CCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEEC
Q 041235 258 YDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDS 335 (362)
Q Consensus 258 ~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~ 335 (362)
. ....++. -+|+|++... ....+.+|..+... ..............+++..+|.+++... ++.+..||+
T Consensus 150 ----~-~p~~i~~~~~g~l~v~~~--~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 150 ----N-DPDGVAVDNSGNVYVTDT--DNNRVVKLEAESNN--QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp ----C-SCCCEEECTTCCEEEEEG--GGTEEEEECTTTCC--EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred ----C-CceeEEEeCCCCEEEEEC--CCCEEEEEecCCCc--eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence 0 1112333 3577776654 24566666554421 1111110112234455556677777764 678999999
Q ss_pred CCCeEEE
Q 041235 336 RYEEIRD 342 (362)
Q Consensus 336 ~t~~~~~ 342 (362)
+++....
T Consensus 221 ~~~~~~~ 227 (270)
T 1rwi_B 221 GSTTSTV 227 (270)
T ss_dssp TCSCCEE
T ss_pred CCCccee
Confidence 8776544
No 98
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=77.77 E-value=31 Score=29.16 Aligned_cols=91 Identities=11% Similarity=0.211 Sum_probs=48.6
Q ss_pred EEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecC------
Q 041235 233 SILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGP------ 305 (362)
Q Consensus 233 ~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~------ 305 (362)
.|..+|+.+..-. .+..... ...+....+...++.. .+..+.||.++... .+..+..
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~------------v~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~--~~~~~~~~~~~~~ 301 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLDGGDI------------INALCFSPNRYWLCAA--TGPSIKIWDLEGKI--IVDELKQEVISTS 301 (340)
T ss_dssp EEEEEETTTTEEEEEEECSSC------------EEEEEECSSSSEEEEE--ETTEEEEEETTTTE--EEEEECCC-----
T ss_pred eEEEEEeccCceeeeecCCce------------EEeeecCCCCceeecc--CCCEEEEEECCCCe--EEEeccccceeee
Confidence 7888998876542 2222211 1223333333333333 36789999886621 1111111
Q ss_pred ---CCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCe
Q 041235 306 ---FMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEE 339 (362)
Q Consensus 306 ---~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~ 339 (362)
......-+++..++..++.. .++.+.+||++|++
T Consensus 302 ~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 11123345566778877665 47889999999875
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=77.10 E-value=47 Score=32.58 Aligned_cols=95 Identities=16% Similarity=0.296 Sum_probs=60.5
Q ss_pred EEEEEECCCceeeEec-CCCCCCCCCCCCCCCceeEEEE-Ec--CeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCc
Q 041235 233 SILSFSMSDEVFEEIK-GPNFPQITTYDESEMTSWRIGI-YD--GSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFME 308 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~-~~--g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~ 308 (362)
.|..+|+.++....+. +.... .....+.- .+ |.+.+.+. .+..+.||.++...|..+..+.....
T Consensus 32 ~I~vwd~~~~~~~~~~~l~~h~---------~~V~~l~~s~~~~~~~l~s~s--~Dg~I~vwd~~~~~~~~~~~~~~h~~ 100 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLTGHE---------GPVWRVDWAHPKFGTILASCS--YDGKVLIWKEENGRWSQIAVHAVHSA 100 (753)
T ss_dssp EEEEEEEETTEEEEEEEECCCS---------SCEEEEEECCTTSCSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred cEEEEecCCCCCccceeccCCc---------CceEEEEecCCCCCCEEEEEe--CCCeEEEEECCCCcccccccccCCCC
Confidence 7888888766665442 22111 12223333 23 66666665 47899999999888888777764444
Q ss_pred ceeeEEEeeC--CeEEEEE-eCCeEEEEECCCC
Q 041235 309 AYQPLGFWRN--GEFFLES-SDNRLVLYDSRYE 338 (362)
Q Consensus 309 ~~~~~~~~~~--~~i~~~~-~~~~l~~yd~~t~ 338 (362)
....+.+..+ +.+++.. .++.+.+||++++
T Consensus 101 ~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 4455556565 6665554 5788999999887
No 100
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=76.97 E-value=60 Score=31.99 Aligned_cols=207 Identities=12% Similarity=0.129 Sum_probs=100.5
Q ss_pred ccccEEEee-cCcEEEEeccccceecccCCCC--CCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccE
Q 041235 107 CDGIFCFFE-NENIYLWNVSMNEYRIVTKRKA--RLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPV 183 (362)
Q Consensus 107 ~~GLl~~~~-~~~~~v~NP~T~~~~~LP~~~~--~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 183 (362)
.+|-+.+.. ...++++||.++++........ ..... .....+..|+... +.+... ..+
T Consensus 224 ~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~----~~i~~i~~d~~g~----lWigt~-----------~Gl 284 (795)
T 4a2l_A 224 SPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISS----NYIRSLAMDSQNR----LWIGTF-----------NDL 284 (795)
T ss_dssp ETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSC----SBEEEEEECTTSC----EEEEES-----------SCE
T ss_pred CCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCC----CeEEEEEEcCCCC----EEEEeC-----------Chh
Confidence 345555544 4568889998887766543221 00001 1133344443221 222111 245
Q ss_pred EEEEcCCCCceecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCC
Q 041235 184 AIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDES 261 (362)
Q Consensus 184 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~ 261 (362)
.+|+..++.++........+.......-.+++. +|.+ |++..+ ..|..||..++.|+.+....... .-.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~~----~Gl~~~~~~~~~~~~~~~~~~~~----~l~ 355 (795)
T 4a2l_A 285 NIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTYF----GGLNYYHPIRNRFKNIRNIPYKN----SLS 355 (795)
T ss_dssp EEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEESS----SCEEEECGGGGSSEEECCCTTSS----SCS
T ss_pred heEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEECC----CCeEEeCCCcccceEEcCCCCCC----CCC
Confidence 677777777766543110000110011122333 4665 555542 16899999988887764322110 001
Q ss_pred CCceeEEEEE-cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEe------cCCCcceeeEEEeeCCe-EEEEEeCCeEEEE
Q 041235 262 EMTSWRIGIY-DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSF------GPFMEAYQPLGFWRNGE-FFLESSDNRLVLY 333 (362)
Q Consensus 262 ~~~~~~l~~~-~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i------~~~~~~~~~~~~~~~~~-i~~~~~~~~l~~y 333 (362)
......+.+. +|.|.+-.. ...+..+..+...+.....- .........+....+|. +++...+..+..|
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~---~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTN---DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp CSSEEEEEECTTSCEEEEES---SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CCeeEEEEECCCCCEEEEEC---CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEE
Confidence 2223344443 567776543 33444444333344332110 01112233344455677 6665556889999
Q ss_pred ECCCCeEEEEE
Q 041235 334 DSRYEEIRDLE 344 (362)
Q Consensus 334 d~~t~~~~~i~ 344 (362)
|+++++++.+.
T Consensus 433 d~~~~~~~~~~ 443 (795)
T 4a2l_A 433 HRNSGQVENFN 443 (795)
T ss_dssp ETTTCCEEEEC
T ss_pred eCCCCcEEEee
Confidence 99998887653
No 101
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=76.78 E-value=36 Score=29.38 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=57.5
Q ss_pred EEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcC-CeeeEEEEecCCCcc
Q 041235 233 SILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFGPFMEA 309 (362)
Q Consensus 233 ~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~ 309 (362)
.+..+|..++.+..+ .+.... .....+.- -+|++.+.+. .+..+.||.++. ..+..+..+......
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~---------~~v~~v~~sp~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHE---------NEVKSVAWAPSGNLLATCS--RDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCS---------SCEEEEEECTTSSEEEEEE--TTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred cEEEEEccCCCeEEEEEccCCC---------CCceEEEEeCCCCEEEEEE--CCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 677788777665433 222111 12223332 2566666555 478999999987 555555555433333
Q ss_pred eeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEE
Q 041235 310 YQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 310 ~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~ 342 (362)
...+.+..++.+++.. .++.+..||.+++.+..
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence 4445555667665554 47778889888876543
No 102
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=76.65 E-value=25 Score=34.34 Aligned_cols=122 Identities=9% Similarity=0.086 Sum_probs=65.2
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCC--ceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSD--EVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFS 288 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~--~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 288 (362)
..++..+|.+|..+..+ .|.++|..+ +.|+. ..+.................++..+|++++... +..+.
T Consensus 64 ~~P~v~~g~vyv~~~~~-----~v~AlD~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---dg~l~ 134 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPFS-----VVYALDARDGRLIWKY-DPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---DGRLE 134 (689)
T ss_dssp CCCEEETTEEEEECGGG-----CEEEEETTTCCEEEEE-CCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TSEEE
T ss_pred ecCEEECCEEEEEcCCC-----eEEEEECCCCceeEEE-cCCCCccccccccccCCCCccEEECCEEEEEcc---CCEEE
Confidence 45678999999987765 799999865 45653 222111000000000111234556777666543 34454
Q ss_pred EEEEcC--CeeeEEEEecCCC--c-ceeeEEEeeCCeEEEEEe------CCeEEEEECCCCeEEEE
Q 041235 289 LWMMKG--GFWTKHLSFGPFM--E-AYQPLGFWRNGEFFLESS------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 289 iW~l~~--~~W~~~~~i~~~~--~-~~~~~~~~~~~~i~~~~~------~~~l~~yd~~t~~~~~i 343 (362)
.+..+. ..|......+... . ...|+. .++.+++... ++.+++||.+|++..+-
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred EEECCCCCEeeeecCcCCCCCCccccCCcEE--ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 444444 5676543212111 1 123433 3566666432 46899999999987653
No 103
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=76.28 E-value=34 Score=28.78 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=57.7
Q ss_pred EEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEc
Q 041235 214 VYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMK 293 (362)
Q Consensus 214 v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~ 293 (362)
+.-||.++...... ...+++||...+.-..+.+..... .........-...+|.+.++.. ....+.+|..+
T Consensus 84 ~~~dG~~lv~~~~~---~~~v~~vd~~Gk~l~~~~~~~~~~----~~~~~~~~v~~~~~G~~lv~~~--~~~~v~~~d~~ 154 (276)
T 3no2_A 84 ILPDGNALVAWCGH---PSTILEVNMKGEVLSKTEFETGIE----RPHAQFRQINKNKKGNYLVPLF--ATSEVREIAPN 154 (276)
T ss_dssp ECTTSCEEEEEEST---TEEEEEECTTSCEEEEEEECCSCS----SGGGSCSCCEECTTSCEEEEET--TTTEEEEECTT
T ss_pred ECCCCCEEEEecCC---CCEEEEEeCCCCEEEEEeccCCCC----cccccccCceECCCCCEEEEec--CCCEEEEECCC
Confidence 44567766654431 237888998665444444332210 0000000011233566555443 34566666554
Q ss_pred C-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEEE
Q 041235 294 G-GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 294 ~-~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~~ 342 (362)
. ..|+... + .. ........+|.+++... +.+++.+|++|+++.+
T Consensus 155 G~~~w~~~~--~--~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 155 GQLLNSVKL--S--GT-PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp SCEEEEEEC--S--SC-CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred CCEEEEEEC--C--CC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 3 3444322 1 11 11223345777777655 5689999999877654
No 104
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=76.06 E-value=37 Score=29.18 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=55.2
Q ss_pred EEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcce
Q 041235 233 SILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAY 310 (362)
Q Consensus 233 ~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~ 310 (362)
.|..+|+.++.... +.... .....+.. -+|.+.+... .+..+.+|.+... ..+..+.......
T Consensus 165 ~i~~wd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~sg~--~d~~v~~wd~~~~--~~~~~~~~h~~~v 229 (340)
T 1got_B 165 TCALWDIETGQQTTTFTGHT-----------GDVMSLSLAPDTRLFVSGA--CDASAKLWDVREG--MCRQTFTGHESDI 229 (340)
T ss_dssp CEEEEETTTTEEEEEECCCS-----------SCEEEEEECTTSSEEEEEE--TTSCEEEEETTTC--SEEEEECCCSSCE
T ss_pred cEEEEECCCCcEEEEEcCCC-----------CceEEEEECCCCCEEEEEe--CCCcEEEEECCCC--eeEEEEcCCcCCE
Confidence 78899998876532 22111 11223322 2566666655 4789999988662 2333343223334
Q ss_pred eeEEEeeCCeEEEEE-eCCeEEEEECCCCeE
Q 041235 311 QPLGFWRNGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 311 ~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
..+++.+++..++.. .++.+.+||+++++.
T Consensus 230 ~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 230 NAICFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 455666677776655 478899999987653
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=75.74 E-value=34 Score=30.51 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=41.1
Q ss_pred CCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 284 GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 284 ~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
+.++.||..+.+.-.++..+........-+++..+|..++.. .++.+.+||+++++..
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 679999998776555555554333344556677788877665 4788999999988654
No 106
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=75.69 E-value=26 Score=29.40 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=59.8
Q ss_pred CceEEEE--------eecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE-Ec-CeEEEEEecCCCCE
Q 041235 217 NGYCYWV--------ASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI-YD-GSLSLLYSEESGHS 286 (362)
Q Consensus 217 ~G~lywl--------~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~-~~-g~L~l~~~~~~~~~ 286 (362)
+|.+|+. ...+ .|..||..++++..+..|... ........+.. -+ |.|.+... ...
T Consensus 28 ~g~l~~~~~~~~~~~~~~~-----~i~~~d~~~g~~~~~~~~~~~------~~~~~~~~i~~~~~~g~l~v~~~---~~~ 93 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAG-----EILRIDLKTGKKTVICKPEVN------GYGGIPAGCQCDRDANQLFVADM---RLG 93 (314)
T ss_dssp TSCEEEEETTCEETTEECC-----EEEEECTTTCCEEEEECCEET------TEECCEEEEEECSSSSEEEEEET---TTE
T ss_pred CCCEEEEEeccccCCCCCC-----EEEEEeCCCCcEEEEEecccC------CCCCCCceEEEecCCCcEEEEEC---CCC
Confidence 6888887 3333 799999988888776553211 01111223433 35 77877764 235
Q ss_pred EEEEEEcCCeeeEE-EEecCCC--cceeeEEEeeCCeEEEEEeC----------------CeEEEEECCCCeEEE
Q 041235 287 FSLWMMKGGFWTKH-LSFGPFM--EAYQPLGFWRNGEFFLESSD----------------NRLVLYDSRYEEIRD 342 (362)
Q Consensus 287 ~~iW~l~~~~W~~~-~~i~~~~--~~~~~~~~~~~~~i~~~~~~----------------~~l~~yd~~t~~~~~ 342 (362)
+.+|..+ ...... ....... .....+.+..+|.+++.... ..++.||++ ++++.
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 5555544 332211 1111011 11334555667888876542 579999987 55544
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=75.69 E-value=29 Score=29.68 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=44.0
Q ss_pred CeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEEE
Q 041235 273 GSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 273 g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~i 343 (362)
|.+.+... .+..+.||.++.........+.........+.+..++..++.. .++.+.+||+++++...+
T Consensus 54 g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 123 (368)
T 3mmy_A 54 GNFLIAGS--WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI 123 (368)
T ss_dssp SEEEEEEE--TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEEEC--CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee
Confidence 46655555 4789999999863333323333223334455666677766554 478899999999886654
No 108
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=75.33 E-value=40 Score=29.13 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=43.7
Q ss_pred EcCe-EEEEEecCCCCEEEEEEEcCCe-------eeEE---EEecC-CCcceeeEEEeeCCeEE-EEE-eCCeEEEEECC
Q 041235 271 YDGS-LSLLYSEESGHSFSLWMMKGGF-------WTKH---LSFGP-FMEAYQPLGFWRNGEFF-LES-SDNRLVLYDSR 336 (362)
Q Consensus 271 ~~g~-L~l~~~~~~~~~~~iW~l~~~~-------W~~~---~~i~~-~~~~~~~~~~~~~~~i~-~~~-~~~~l~~yd~~ 336 (362)
-+|+ |++... ....+.+|.++... .... ..+.. .....+.+.+..+|+.+ +.. .+..+..||++
T Consensus 164 pdg~~l~~~~~--~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~ 241 (361)
T 3scy_A 164 PDGKYLLADDL--GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA 241 (361)
T ss_dssp TTSSEEEEEET--TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE
T ss_pred CCCCEEEEEeC--CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec
Confidence 3676 444432 57799999998632 3222 11211 11224556777788754 444 37889999999
Q ss_pred CCeEEEEE
Q 041235 337 YEEIRDLE 344 (362)
Q Consensus 337 t~~~~~i~ 344 (362)
+++++.+.
T Consensus 242 ~g~~~~~~ 249 (361)
T 3scy_A 242 DGMLDEIQ 249 (361)
T ss_dssp TTEEEEEE
T ss_pred CCceEEeE
Confidence 98886654
No 109
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=74.89 E-value=45 Score=29.54 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=38.4
Q ss_pred EEEEEcCCeeeEEEEecCCCcceeeEEEeeCCe-EEEEEe--CCeEEEEECCCCeEEE
Q 041235 288 SLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGE-FFLESS--DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 288 ~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~~--~~~l~~yd~~t~~~~~ 342 (362)
.||+++-.+.+.+.+|+.. .....+.+..+|+ +++..+ ++.+.++|.+|++...
T Consensus 299 ~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 299 EVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred eEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 6888877777888888532 2345566677887 555543 7889999999987654
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=74.87 E-value=36 Score=28.42 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=39.8
Q ss_pred CCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEE
Q 041235 284 GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 284 ~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~ 342 (362)
+.++.||.++...-.+............-+.+..++..++.. .++.+..||.++++...
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence 678999998775544444443222334455666778877665 47889999999987543
No 111
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=74.57 E-value=39 Score=28.74 Aligned_cols=121 Identities=6% Similarity=-0.013 Sum_probs=64.2
Q ss_pred EEECce-EEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEE
Q 041235 214 VYLNGY-CYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLW 290 (362)
Q Consensus 214 v~~~G~-lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW 290 (362)
+.-+|. +|..... ...|..+|..+.+. ..++.+.....+. ........+.. -+|+..++........+.+|
T Consensus 96 ~s~dg~~l~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 96 INNTTQTLWFGNTV----NSAVTAIDAKTGEVKGRLVLDDRKRTEE--VRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp EETTTTEEEEEETT----TTEEEEEETTTCCEEEEEESCCCCCCSS--CCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred ECCCCCEEEEEecC----CCEEEEEeCCCCeeEEEEecCCCccccc--cCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 444666 5544443 23899999988765 4566543321000 00001122333 35654444332245667777
Q ss_pred EEcCCeeeEEEEecCCCcceeeEEEeeCCeE-EEEEeCCeEEEEECCCCeEEE
Q 041235 291 MMKGGFWTKHLSFGPFMEAYQPLGFWRNGEF-FLESSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 291 ~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~~~l~~yd~~t~~~~~ 342 (362)
.++. ...+..+.........+.+..+++. ++...++.+..||+++++...
T Consensus 170 d~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~ 220 (353)
T 3vgz_A 170 DGGN--IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILS 220 (353)
T ss_dssp ETTT--TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE
T ss_pred cCCC--CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE
Confidence 6644 3344445422222345566667765 455557889999999987654
No 112
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=74.31 E-value=39 Score=31.76 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=66.8
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEEEEc-CeEEEEEecCCCCEEEEEEEcC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIGIYD-GSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~~~~-g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
+|...+.+... ...|..+|..+++... ++....- .......+..-+ |.++ +.....+.++.||..+.
T Consensus 334 dg~~l~va~~~---~~~v~v~D~~tg~l~~~i~~g~~p-------h~g~g~~~~~p~~g~~~-~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 334 SHRYFMTAANN---SNKVAVIDSKDRRLSALVDVGKTP-------HPGRGANFVHPKYGPVW-STSHLGDGSISLIGTDP 402 (543)
T ss_dssp TSCEEEEEEGG---GTEEEEEETTTTEEEEEEECSSSB-------CCTTCEEEEETTTEEEE-EEEBSSSSEEEEEECCT
T ss_pred CCCEEEEEecC---CCeEEEEECCCCeEEEeeccCCCC-------CCCCCcccCCCCCccEE-EeccCCCceEEEEEeCC
Confidence 56644444432 3478889999886643 3331110 000111222233 4544 33332467999999876
Q ss_pred -----CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe--------CCeEEEEECCCCeE
Q 041235 295 -----GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS--------DNRLVLYDSRYEEI 340 (362)
Q Consensus 295 -----~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~--------~~~l~~yd~~t~~~ 340 (362)
..|+.+.++.....-...+.+..++..+++.. +..+.+||.+|.+.
T Consensus 403 ~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 403 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp TTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred CCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 34999998874433345566677888777653 46899999998764
No 113
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=73.93 E-value=43 Score=28.93 Aligned_cols=66 Identities=6% Similarity=-0.048 Sum_probs=40.0
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCe
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEE 339 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~ 339 (362)
+|++.+... .+..+.||.+.. .....+..+.........+.+..++.++....+..++.|+...+.
T Consensus 216 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 283 (377)
T 3dwl_C 216 SGNALAYAG--HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESG 283 (377)
T ss_dssp TSSCEEEEE--TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC--
T ss_pred CCCEEEEEe--CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCc
Confidence 566555544 477999999987 222223333333333455666778888888777778888887544
No 114
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=73.90 E-value=40 Score=28.50 Aligned_cols=180 Identities=12% Similarity=0.068 Sum_probs=93.4
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCc-e
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSW-R 194 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W-~ 194 (362)
+..+.++|+.|++....-..+. . .. ++.+++..+ + ++... ... -.+.+++..++.- .
T Consensus 19 ~~~v~~~d~~~~~~~~~~~~~~----~-----~~-~~~~s~dg~-~-l~~~~---~~~-------~~i~~~d~~~~~~~~ 76 (331)
T 3u4y_A 19 LRRISFFSTDTLEILNQITLGY----D-----FV-DTAITSDCS-N-VVVTS---DFC-------QTLVQIETQLEPPKV 76 (331)
T ss_dssp GTEEEEEETTTCCEEEEEECCC----C-----EE-EEEECSSSC-E-EEEEE---STT-------CEEEEEECSSSSCEE
T ss_pred CCeEEEEeCcccceeeeEEccC----C-----cc-eEEEcCCCC-E-EEEEe---CCC-------CeEEEEECCCCceeE
Confidence 5678999999998754433221 1 13 677777544 2 33221 111 3678888877654 1
Q ss_pred -ecccCcccceeecCCCC-ccEEECceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEE-E
Q 041235 195 -DLEGLFQMGHYYGSDST-DNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIG-I 270 (362)
Q Consensus 195 -~~~~~~~~~~~~~~~~~-~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~-~ 270 (362)
..... .. ... -.+.-+|..-+..... +....|..+|+.+.+... ++.+.. ...+. .
T Consensus 77 ~~~~~~-~~------~~~~~~~s~dg~~l~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~------------~~~~~~s 136 (331)
T 3u4y_A 77 VAIQEG-QS------SMADVDITPDDQFAVTVTGL-NHPFNMQSYSFLKNKFISTIPIPYD------------AVGIAIS 136 (331)
T ss_dssp EEEEEC-SS------CCCCEEECTTSSEEEECCCS-SSSCEEEEEETTTTEEEEEEECCTT------------EEEEEEC
T ss_pred EecccC-CC------CccceEECCCCCEEEEecCC-CCcccEEEEECCCCCeEEEEECCCC------------ccceEEC
Confidence 11110 00 111 1222345533333322 112279999998876533 333211 12332 3
Q ss_pred EcCe-EEEEEecCCCCE-EEEEEEcC-Cee-eE-EEEecCCCcceeeEEEeeCCe-EEEEEe-CCeEEEEECCCCeE
Q 041235 271 YDGS-LSLLYSEESGHS-FSLWMMKG-GFW-TK-HLSFGPFMEAYQPLGFWRNGE-FFLESS-DNRLVLYDSRYEEI 340 (362)
Q Consensus 271 ~~g~-L~l~~~~~~~~~-~~iW~l~~-~~W-~~-~~~i~~~~~~~~~~~~~~~~~-i~~~~~-~~~l~~yd~~t~~~ 340 (362)
-+|+ |++... .... +.+|.++. ..- .. ...+. .......+.+..+|+ +++... +..+..||+++++.
T Consensus 137 pdg~~l~~~~~--~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 137 PNGNGLILIDR--SSANTVRRFKIDADGVLFDTGQEFIS-GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp TTSSCEEEEEE--TTTTEEEEEEECTTCCEEEEEEEEEC-SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CCCCEEEEEec--CCCceEEEEEECCCCcEeecCCcccc-CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 3565 555444 3345 99999986 221 11 11222 122245566677887 455543 67899999998764
No 115
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=73.81 E-value=41 Score=35.04 Aligned_cols=177 Identities=7% Similarity=0.002 Sum_probs=89.8
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.++|..+++......... .. ...+.+.+.. .+ ++... .+ -.+.+++..++....
T Consensus 982 ~g~i~i~d~~~~~~~~~~~~h~---~~------v~~l~~s~dg-~~-l~s~~----~d-------g~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 982 DGAIKIIELPNNRVFSSGVGHK---KA------VRHIQFTADG-KT-LISSS----ED-------SVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp TSCCEEEETTTTSCEEECCCCS---SC------CCCEEECSSS-SC-EEEEC----SS-------SBEEEEETTTTEEEC
T ss_pred CCCEEEEEcCCCceeeecccCC---Cc------eEEEEECCCC-CE-EEEEc----CC-------CEEEEEECCCCceEE
Confidence 5578888887776544322211 11 3345555543 22 22221 11 467888888776554
Q ss_pred cccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEE-EEEcC
Q 041235 196 LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRI-GIYDG 273 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l-~~~~g 273 (362)
...... ... .-...-+|.+.-.+.++ .|..+|+.+.... .+...... ...+ ..-+|
T Consensus 1040 ~~~~~~-~v~-----~~~~~~~~~l~~~~~dg-----~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~s~d~ 1097 (1249)
T 3sfz_A 1040 LQAHQE-TVK-----DFRLLQDSRLLSWSFDG-----TVKVWNVITGRIERDFTCHQGT-----------VLSCAISSDA 1097 (1249)
T ss_dssp CBCCSS-CEE-----EEEECSSSEEEEEESSS-----EEEEEETTTTCCCEEEECCSSC-----------CCCEEECSSS
T ss_pred EecCCC-cEE-----EEEEcCCCcEEEEECCC-----cEEEEECCCCceeEEEcccCCc-----------EEEEEECCCC
Confidence 332110 000 00111145554444444 8999998876542 22222111 1122 22356
Q ss_pred eEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeE
Q 041235 274 SLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 274 ~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
++.++.. .+..+.||.++... .+..+.........+.+..++.+++.. .++.+..||+++++.
T Consensus 1098 ~~l~s~s--~d~~v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1098 TKFSSTS--ADKTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp SSCEEEC--CSSCCCEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred CEEEEEc--CCCcEEEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 5544444 46788999886521 112222222233445666778776655 477899999988754
No 116
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=73.04 E-value=25 Score=29.80 Aligned_cols=109 Identities=7% Similarity=-0.046 Sum_probs=59.7
Q ss_pred Cc-eEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcC
Q 041235 217 NG-YCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 217 ~G-~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
+| .+||..... ..|..+|.. +..+.+..|... . ..+ ..-+|+|.+... ....+.+|..+
T Consensus 55 ~g~~l~~~d~~~----~~i~~~~~~-g~~~~~~~~~~~----------~-~gl~~d~dG~l~v~~~--~~~~v~~~~~~- 115 (305)
T 3dr2_A 55 AQRTLVWSDLVG----RRVLGWRED-GTVDVLLDATAF----------T-NGNAVDAQQRLVHCEH--GRRAITRSDAD- 115 (305)
T ss_dssp GGTEEEEEETTT----TEEEEEETT-SCEEEEEESCSC----------E-EEEEECTTSCEEEEET--TTTEEEEECTT-
T ss_pred CCCEEEEEECCC----CEEEEEeCC-CCEEEEeCCCCc----------c-ceeeECCCCCEEEEEC--CCCEEEEECCC-
Confidence 45 488987653 378889984 445555444322 1 123 233677765543 34556665543
Q ss_pred CeeeEEEEecCCC--cceeeEEEeeCCeEEEEEe------------------CCeEEEEECCCCeEEEEE
Q 041235 295 GFWTKHLSFGPFM--EAYQPLGFWRNGEFFLESS------------------DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 295 ~~W~~~~~i~~~~--~~~~~~~~~~~~~i~~~~~------------------~~~l~~yd~~t~~~~~i~ 344 (362)
.+...+....... .....+.+..+|.+++... ...++.||+++++++.+.
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 3333322111110 1123466667888888421 257999999888876653
No 117
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=72.70 E-value=48 Score=28.91 Aligned_cols=107 Identities=10% Similarity=0.115 Sum_probs=59.0
Q ss_pred ECceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEEEE-cCeEEEEEecCCCCEEEEEEEc
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIGIY-DGSLSLLYSEESGHSFSLWMMK 293 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~iW~l~ 293 (362)
-+|.+...+.++ .|..||+.+..... +.... .....+... +|++.++.. .+..+.+|.+.
T Consensus 216 ~~~~~~~~~~~g-----~i~~~d~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~ 277 (425)
T 1r5m_A 216 DDDKFVIPGPKG-----AIFVYQITEKTPTGKLIGHH-----------GPISVLEFNDTNKLLLSAS--DDGTLRIWHGG 277 (425)
T ss_dssp ETTEEEEECGGG-----CEEEEETTCSSCSEEECCCS-----------SCEEEEEEETTTTEEEEEE--TTSCEEEECSS
T ss_pred CCCEEEEEcCCC-----eEEEEEcCCCceeeeeccCC-----------CceEEEEECCCCCEEEEEc--CCCEEEEEECC
Confidence 355544444443 79999998764422 22111 112233333 566555554 47789999886
Q ss_pred CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEE
Q 041235 294 GGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 294 ~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~ 342 (362)
... .+..+.........+.+..++.++....++.+.+||+++++...
T Consensus 278 ~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 278 NGN--SQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp SBS--CSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCc--cceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeE
Confidence 622 22223222233344555566733444558899999999887543
No 118
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=72.42 E-value=53 Score=29.30 Aligned_cols=110 Identities=10% Similarity=0.027 Sum_probs=54.4
Q ss_pred cEEECceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEE
Q 041235 213 NVYLNGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWM 291 (362)
Q Consensus 213 ~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~ 291 (362)
++..+|.....+..+ ..|..||+.++.-. .+..... .. .-+..+|...++.. .+..+.||.
T Consensus 301 ~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~h~~-----------~v-~~~~~~~~~l~sg~--~dg~i~vwd 362 (435)
T 1p22_A 301 CLQYRDRLVVSGSSD----NTIRLWDIECGACLRVLEGHEE-----------LV-RCIRFDNKRIVSGA--YDGKIKVWD 362 (435)
T ss_dssp EEEEETTEEEEEETT----SCEEEEETTTCCEEEEECCCSS-----------CE-EEEECCSSEEEEEE--TTSCEEEEE
T ss_pred EEEeCCCEEEEEeCC----CeEEEEECCCCCEEEEEeCCcC-----------cE-EEEEecCCEEEEEe--CCCcEEEEE
Confidence 344455544444432 37999999876543 2321111 11 22334777666665 478999999
Q ss_pred EcC-C------eeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEE
Q 041235 292 MKG-G------FWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 292 l~~-~------~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~ 342 (362)
+.. . ....+..+.........+.+ ++..++.. .++.+.+||+.++....
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 363 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp HHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------
T ss_pred CCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 865 1 11234444322222222333 55555544 48899999998876543
No 119
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=71.12 E-value=68 Score=29.98 Aligned_cols=191 Identities=13% Similarity=0.147 Sum_probs=94.7
Q ss_pred ccEEEee-cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEE
Q 041235 109 GIFCFFE-NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYN 187 (362)
Q Consensus 109 GLl~~~~-~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vys 187 (362)
++++... .....++|..|++.+.+...+. ..+.++|.. ++ ++....+..+. ..+.+++
T Consensus 123 ~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~------------~~~~~spDG-~~-la~~~~~~~~~-------~~i~~~d 181 (582)
T 3o4h_A 123 AVVFTGATEDRVALYALDGGGLRELARLPG------------FGFVSDIRG-DL-IAGLGFFGGGR-------VSLFTSN 181 (582)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEEEEEESS------------CEEEEEEET-TE-EEEEEEEETTE-------EEEEEEE
T ss_pred eEEEEecCCCCceEEEccCCcEEEeecCCC------------ceEEECCCC-CE-EEEEEEcCCCC-------eEEEEEc
Confidence 4555544 4456799999998877754321 224455533 23 33222222221 3577888
Q ss_pred cCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeE
Q 041235 188 FSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWR 267 (362)
Q Consensus 188 s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~ 267 (362)
..++.++.+....... ......-||...+..... ....|..+|+.+++...+.-.... ... ........
T Consensus 182 ~~~g~~~~l~~~~~~~------~~~~~SpDG~~l~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~-~~~--~~~~~~~~ 250 (582)
T 3o4h_A 182 LSSGGLRVFDSGEGSF------SSASISPGMKVTAGLETA--REARLVTVDPRDGSVEDLELPSKD-FSS--YRPTAITW 250 (582)
T ss_dssp TTTCCCEEECCSSCEE------EEEEECTTSCEEEEEECS--SCEEEEEECTTTCCEEECCCSCSH-HHH--HCCSEEEE
T ss_pred CCCCCceEeecCCCcc------ccceECCCCCEEEEccCC--CeeEEEEEcCCCCcEEEccCCCcC-hhh--hhhccccc
Confidence 8888887664421110 011222366644433322 134799999998877622211110 000 00000000
Q ss_pred E-EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe----CCeEEEEECCCCeEEE
Q 041235 268 I-GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS----DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 268 l-~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~----~~~l~~yd~~t~~~~~ 342 (362)
. ..-+|++.+... ...++.||.+ . .... .+ ......+.+. ++.+++... ..+++.+|.++ +.+.
T Consensus 251 ~~~spdg~~~~~~~--~~g~~~l~~~-g-~~~~----~~-~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~-~~~~ 319 (582)
T 3o4h_A 251 LGYLPDGRLAVVAR--REGRSAVFID-G-ERVE----AP-QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE-PLLE 319 (582)
T ss_dssp EEECTTSCEEEEEE--ETTEEEEEET-T-EEEC----CC-SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC-EEEC
T ss_pred eeEcCCCcEEEEEE--cCCcEEEEEE-C-Ceec----cC-CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC-ceEE
Confidence 0 234676655555 3568999988 3 2111 11 1223345555 777765533 25588888775 4433
No 120
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=70.56 E-value=63 Score=29.32 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=61.1
Q ss_pred CccEEEC-----ceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCC-
Q 041235 211 TDNVYLN-----GYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESG- 284 (362)
Q Consensus 211 ~~~v~~~-----G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~- 284 (362)
..++.++ |.|||....+ .|..+|+.++....+..+... ...-.+..+|.|++.......
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~-----~I~~id~~~g~v~~~~~~~~~----------P~giavd~dG~lyVad~~~~~~ 205 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRD-----AFRHVDFVNQYVDIKTTNIGQ----------CADVNFTLNGDMVVVDDQSSDT 205 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTS-----CEEEEETTTTEEEEECCCCSC----------EEEEEECTTCCEEEEECCSCTT
T ss_pred CceEEEccccCCCEEEEEeCCC-----CEEEEECCCCEEEEeecCCCC----------ccEEEECCCCCEEEEcCCCCcc
Confidence 4456665 8999976543 799999988888766332111 111223346776666542211
Q ss_pred CEEEEEEEcCCeeeEEEEecCCCcceeeEEEee-CCeEEEEEe-CCeEEEEECCCCeE
Q 041235 285 HSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWR-NGEFFLESS-DNRLVLYDSRYEEI 340 (362)
Q Consensus 285 ~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~i~~~~~-~~~l~~yd~~t~~~ 340 (362)
..-.++...+..|.....+.. ......+++.. ++.+|+... .+++..||++++++
T Consensus 206 ~~gv~~~~~~~~~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 206 NTGIYLFTRASGFTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp SEEEEEECGGGTTCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred cceEEEEECCCCeeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 222233332333331112211 11123355655 577777654 56788889887766
No 121
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=70.09 E-value=43 Score=27.29 Aligned_cols=183 Identities=10% Similarity=0.051 Sum_probs=92.2
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCC-CCce
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFST-NSWR 194 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~-~~W~ 194 (362)
+..++++|+.+++...+..... . ...+.+.|..+ +-++ .. . -.+.+++..+ +...
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~----~------v~~~~~spdg~-~l~~-~~-----~-------~~i~~~d~~~~~~~~ 76 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPE----L------FEAPNWSPDGK-YLLL-NS-----E-------GLLYRLSLAGDPSPE 76 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESS----C------CEEEEECTTSS-EEEE-EE-----T-------TEEEEEESSSCCSCE
T ss_pred ceeEEEEeCCCCceeeeccCCc----c------eEeeEECCCCC-EEEE-Ec-----C-------CeEEEEeCCCCCCce
Confidence 3578999999998776654321 1 45566666543 3222 11 1 3678888887 6655
Q ss_pred ecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcC
Q 041235 195 DLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDG 273 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g 273 (362)
.+........ .......-+|.....+.........|..+|..+...+.+...... ..+ ..-+|
T Consensus 77 ~~~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------~~~~~spdg 140 (297)
T 2ojh_A 77 KVDTGFATIC----NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPS------------YWHGWSPDG 140 (297)
T ss_dssp ECCCTTCCCB----CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSE------------EEEEECTTS
T ss_pred Eecccccccc----ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCc------------cceEECCCC
Confidence 4433110000 011122235654333332111245888888877665444322111 122 22256
Q ss_pred eEEE-EEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEE-EEe---CCeEEEEECCCCeEEEE
Q 041235 274 SLSL-LYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFL-ESS---DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 274 ~L~l-~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~---~~~l~~yd~~t~~~~~i 343 (362)
+..+ ... ....+.||.++. ... ..+.........+.+..++..++ ... ..+++.+++.++..+.+
T Consensus 141 ~~l~~~~~--~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 141 KSFTYCGI--RDQVFDIYSMDIDSGVE---TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp SEEEEEEE--ETTEEEEEEEETTTCCE---EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred CEEEEEEC--CCCceEEEEEECCCCcc---eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 5433 443 356789999865 222 22222222234455556676443 332 35577777777666554
No 122
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=69.76 E-value=50 Score=27.92 Aligned_cols=109 Identities=7% Similarity=-0.033 Sum_probs=58.3
Q ss_pred ECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEc
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMK 293 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~ 293 (362)
.+|.+|..... ...|..+|+.+.+. ..++.+... . ...+ ..-+|+..++... ....+.+|.++
T Consensus 9 ~~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~--------~--~~~~~~s~dg~~~~v~~~-~~~~i~~~d~~ 73 (349)
T 1jmx_B 9 AGHEYMIVTNY----PNNLHVVDVASDTVYKSCVMPDKF--------G--PGTAMMAPDNRTAYVLNN-HYGDIYGIDLD 73 (349)
T ss_dssp TTCEEEEEEET----TTEEEEEETTTTEEEEEEECSSCC--------S--SCEEEECTTSSEEEEEET-TTTEEEEEETT
T ss_pred CCCEEEEEeCC----CCeEEEEECCCCcEEEEEecCCCC--------C--CceeEECCCCCEEEEEeC-CCCcEEEEeCC
Confidence 35555555443 34899999988766 345665411 0 1122 2335664433332 45678888776
Q ss_pred CCeeeEEEEecCC----CcceeeEEEeeCCeEEEEEe-------------CCeEEEEECCCCe
Q 041235 294 GGFWTKHLSFGPF----MEAYQPLGFWRNGEFFLESS-------------DNRLVLYDSRYEE 339 (362)
Q Consensus 294 ~~~W~~~~~i~~~----~~~~~~~~~~~~~~i~~~~~-------------~~~l~~yd~~t~~ 339 (362)
...-.....+... ......+.+..+|+.++... ...+..||+++++
T Consensus 74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 5432222222210 01123456666776554433 3789999998743
No 123
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=69.61 E-value=51 Score=27.94 Aligned_cols=55 Identities=13% Similarity=0.284 Sum_probs=35.3
Q ss_pred CCCEEEEEEEcC-CeeeEEEEecCCCcceeeEEEeeCC----eEEEE-EeCCeEEEEECCC
Q 041235 283 SGHSFSLWMMKG-GFWTKHLSFGPFMEAYQPLGFWRNG----EFFLE-SSDNRLVLYDSRY 337 (362)
Q Consensus 283 ~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~----~i~~~-~~~~~l~~yd~~t 337 (362)
.+..+.||.++. ..|..+..+........-+.+.+++ .+++. ..++.+.+||+++
T Consensus 187 ~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 187 CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 578899999976 6787766654333333444444443 44544 4478899999876
No 124
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=68.73 E-value=68 Score=29.02 Aligned_cols=109 Identities=10% Similarity=0.095 Sum_probs=62.1
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEE-EEcCe-EEEEEecC-CCCEEEEEEEc
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIG-IYDGS-LSLLYSEE-SGHSFSLWMMK 293 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~-L~l~~~~~-~~~~~~iW~l~ 293 (362)
+|.||+.... ..|..||+.++....+..+.. ....++ ..+|+ |++..... ......+|...
T Consensus 149 ~g~Lyv~d~~-----~~I~~id~~~~~v~~~~~~~~-----------~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 149 HNHLYLVGEQ-----HPTRLIDFEKEYVSTVYSGLS-----------KVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp EEEEEEEEBT-----EEEEEEETTTTEEEEEECCCS-----------CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCeEEEEeCC-----CcEEEEECCCCEEEEEecCCC-----------CcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 4889987664 389999999988766532111 112332 33566 66665432 22334555555
Q ss_pred CCeeeEEEEecCCCcceeeEEEee-CCeEEEEEe-CCeEEEEECCCCeEEE
Q 041235 294 GGFWTKHLSFGPFMEAYQPLGFWR-NGEFFLESS-DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 294 ~~~W~~~~~i~~~~~~~~~~~~~~-~~~i~~~~~-~~~l~~yd~~t~~~~~ 342 (362)
+..|.....+.. ......+++.. ++.+++... ..++..||++++....
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~ 262 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP 262 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence 544442222221 11234455666 677777654 6789999999887643
No 125
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=68.43 E-value=59 Score=28.20 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=55.8
Q ss_pred cEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCC---CEEEEEEEcCCeeeEEEEecC-
Q 041235 232 ASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESG---HSFSLWMMKGGFWTKHLSFGP- 305 (362)
Q Consensus 232 ~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~---~~~~iW~l~~~~W~~~~~i~~- 305 (362)
..|..||+.+... ..+..+... .........+.- -+|++.++... + ..+.||.+... ..+..+..
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h-----~~~~~~i~~i~~~~~~~~l~~~~~--d~~~g~i~i~d~~~~--~~~~~~~~~ 277 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSM-----INNSNSIRSVKFSPQGSLLAIAHD--SNSFGCITLYETEFG--ERIGSLSVP 277 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC--------CCCCCEEEEEECSSTTEEEEEEE--ETTEEEEEEEETTTC--CEEEEECBC
T ss_pred CcEEEEECCCCceeEEEeccccc-----cccCCccceEEECCCCCEEEEEec--CCCCceEEEEECCCC--cccceeccC
Confidence 4899999987654 334431000 000011223322 25666555543 4 78999998662 23333332
Q ss_pred ------------CCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 306 ------------FMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 306 ------------~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
.......+.+..++.+++.. .++.+.+||+++++..
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred cccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 22233445566677776654 4888999999988653
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=68.32 E-value=66 Score=28.71 Aligned_cols=186 Identities=10% Similarity=0.069 Sum_probs=92.1
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..++++|..++..+.+..... . ...+.+.|..+ +++... ..... ..+.+++..++.-+.+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~----~------v~~~~~Spdg~--~la~~s--~~~~~------~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQ----P------LMSPAWSPDGS--KLAYVT--FESGR------SALVIQTLANGAVRQV 218 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESS----C------EEEEEECTTSS--EEEEEE--CTTSS------CEEEEEETTTCCEEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCC----c------ceeeEEcCCCC--EEEEEE--ecCCC------cEEEEEECCCCcEEEe
Confidence 578999988766555543221 1 45566666443 233332 11110 4788899888766544
Q ss_pred ccCcccceeecCCCCccEEECce-EEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEE-EEcCe
Q 041235 197 EGLFQMGHYYGSDSTDNVYLNGY-CYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIG-IYDGS 274 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~ 274 (362)
....... ......-+|. +.+..... ....|..+|+.++....+..... ....+. .-+|+
T Consensus 219 ~~~~~~~------~~~~~spdg~~la~~~~~~--g~~~i~~~d~~~~~~~~l~~~~~-----------~~~~~~~spdg~ 279 (415)
T 2hqs_A 219 ASFPRHN------GAPAFSPDGSKLAFALSKT--GSLNLYVMDLASGQIRQVTDGRS-----------NNTEPTWFPDSQ 279 (415)
T ss_dssp ECCSSCE------EEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEECCCCSS-----------CEEEEEECTTSS
T ss_pred ecCCCcc------cCEEEcCCCCEEEEEEecC--CCceEEEEECCCCCEEeCcCCCC-----------cccceEECCCCC
Confidence 3311100 0111122565 44444322 13479999998877654432111 111222 23576
Q ss_pred EEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEE-Ee---CCeEEEEECCCCeEEEE
Q 041235 275 LSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLE-SS---DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 275 L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~-~~---~~~l~~yd~~t~~~~~i 343 (362)
..++... ......||.++-..-. ...+.........+.+..+|+.++. .. ...+..+|+++++.+.+
T Consensus 280 ~l~~~s~-~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l 350 (415)
T 2hqs_A 280 NLAFTSD-QAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 350 (415)
T ss_dssp EEEEEEC-TTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC
T ss_pred EEEEEEC-CCCCcEEEEEECCCCC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe
Confidence 4444433 2334456655431111 1222211122233455567775543 33 25799999999887654
No 127
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=68.16 E-value=62 Score=28.31 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=56.5
Q ss_pred cEEEEEECCCceeeE-ec--CCCCCCCCCCCCCCCceeEEEE--EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCC
Q 041235 232 ASILSFSMSDEVFEE-IK--GPNFPQITTYDESEMTSWRIGI--YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPF 306 (362)
Q Consensus 232 ~~il~fD~~~~~~~~-i~--~P~~~~~~~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~ 306 (362)
..|..+|+.++.-.. +. .|... ......+.. .++.+.+... .+..+.||.+.... ..+..+...
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h--------~~~v~~~~~~~~~~~~l~sgs--~D~~v~~wd~~~~~-~~~~~~~~h 248 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGH--------TADVLSLSINSLNANMFISGS--CDTTVRLWDLRITS-RAVRTYHGH 248 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSC--------CSCEEEEEECSSSCCEEEEEE--TTSCEEEEETTTTC-CCCEEECCC
T ss_pred CcEEEEEcCCCcEEEEeecccCCCC--------ccCeEEEEeecCCCCEEEEEE--CCCeEEEEECCCCC-cceEEECCc
Confidence 378899998876533 22 22221 112222322 2566666666 47899999986411 111222222
Q ss_pred CcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEE
Q 041235 307 MEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 307 ~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~ 342 (362)
......+.+.+++..++.. .++.+..||++++....
T Consensus 249 ~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 249 EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 2233445666677776654 47889999999876543
No 128
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=66.12 E-value=1e+02 Score=30.21 Aligned_cols=210 Identities=7% Similarity=0.046 Sum_probs=98.4
Q ss_pred ccccEEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEE
Q 041235 107 CDGIFCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIY 186 (362)
Q Consensus 107 ~~GLl~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 186 (362)
.+|-+-+.....++++||.++++..+...+...... .......+..|+..+ +.+... . -.+..|
T Consensus 272 ~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l--~~~~i~~i~~D~~g~----lWigt~-~---------~Gl~~~ 335 (795)
T 4a2l_A 272 SQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSL--SQRSVRSIFMDSQGG----MWLGTY-F---------GGLNYY 335 (795)
T ss_dssp TTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSC--SSSCEEEEEECTTSC----EEEEES-S---------SCEEEE
T ss_pred CCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCC--CCCcEEEEEEeCCcC----EEEEEC-C---------CCeEEe
Confidence 355555554347888899888877664432110000 001133444454322 222210 0 234555
Q ss_pred EcCCCCceecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCc
Q 041235 187 NFSTNSWRDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMT 264 (362)
Q Consensus 187 ss~~~~W~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~ 264 (362)
+..++.++....... +.........+++. +|.+ |++..+ ..|..||..++.|+.+..+.... . ..-....
T Consensus 336 ~~~~~~~~~~~~~~~-~~~l~~~~V~~i~~d~~g~l-WiGt~~----~Gl~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~ 407 (795)
T 4a2l_A 336 HPIRNRFKNIRNIPY-KNSLSDNVVSCIVEDKDKNL-WIGTND----GGLNLYNPITQRFTSYTLQEDES-A-RGIGSNN 407 (795)
T ss_dssp CGGGGSSEEECCCTT-SSSCSCSSEEEEEECTTSCE-EEEESS----SCEEEECTTTCCEEEECCC--------CCSCSC
T ss_pred CCCcccceEEcCCCC-CCCCCCCeeEEEEECCCCCE-EEEECC----CCeEEEcCCCCcEEEEecCCCCc-c-cCCCCcc
Confidence 555555544332110 00000011122333 4565 555442 16999999999998876443100 0 0001122
Q ss_pred eeEEEE-EcCe-EEEEEecCCCCEEEEEEEcCCeeeEEEEecC--CCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeE
Q 041235 265 SWRIGI-YDGS-LSLLYSEESGHSFSLWMMKGGFWTKHLSFGP--FMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEI 340 (362)
Q Consensus 265 ~~~l~~-~~g~-L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~--~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~ 340 (362)
...+.+ .+|. |.+-.. ...+.++..+...+.......+ .......+....+|.+++... ..++.||++++++
T Consensus 408 v~~i~~d~~g~~lWigt~---~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 408 IKAVYVDEKKSLVYIGTH---AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSF 483 (795)
T ss_dssp EEEEEEETTTTEEEEEET---TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEEeC---cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeE
Confidence 344544 3677 666543 3455555444333322211011 111222333344567766654 7899999999988
Q ss_pred EEEE
Q 041235 341 RDLE 344 (362)
Q Consensus 341 ~~i~ 344 (362)
+.+.
T Consensus 484 ~~~~ 487 (795)
T 4a2l_A 484 TTIE 487 (795)
T ss_dssp EECC
T ss_pred EEcc
Confidence 7654
No 129
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=65.53 E-value=57 Score=26.97 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=55.7
Q ss_pred EEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEEEE-cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcce
Q 041235 233 SILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIGIY-DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAY 310 (362)
Q Consensus 233 ~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~ 310 (362)
.|..||+.+.+.. .+..... ....+.-. +|.|. +.. .+..+.+|.++... .+..+.......
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~-----------~i~~~~~~~~~~l~-~~~--~dg~v~iwd~~~~~--~~~~~~~~~~~i 269 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHES-----------FVYCIKLLPNGDIV-SCG--EDRTVRIWSKENGS--LKQVITLPAISI 269 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSS-----------CEEEEEECTTSCEE-EEE--TTSEEEEECTTTCC--EEEEEECSSSCE
T ss_pred eEEEEECCchhhhhhhhcCCc-----------eEEEEEEecCCCEE-EEe--cCCEEEEEECCCCc--eeEEEeccCceE
Confidence 8999999876542 2332211 12233333 45433 333 57899999887643 233333223334
Q ss_pred eeEEEeeCCeEEEEEeCCeEEEEECCCCeEE
Q 041235 311 QPLGFWRNGEFFLESSDNRLVLYDSRYEEIR 341 (362)
Q Consensus 311 ~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~ 341 (362)
..+.+..++.++....++.+..||++++++.
T Consensus 270 ~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 270 WSVDCMSNGDIIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEEEECTTSCEEEEETTSCEEEEESCGGGCC
T ss_pred EEEEEccCCCEEEEeCCCcEEEEeCCCCcee
Confidence 4556667778776667899999999988764
No 130
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=65.46 E-value=44 Score=28.17 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=17.5
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGP 250 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P 250 (362)
+|.+|.-+..+ .|.+||...+.......+
T Consensus 147 ~g~l~vgt~~~-----~l~~~d~~g~~~~~~~~~ 175 (330)
T 3hxj_A 147 DGTIYVGSNDN-----YLYAINPDGTEKWRFKTN 175 (330)
T ss_dssp TSCEEEECTTS-----EEEEECTTSCEEEEEECS
T ss_pred CCEEEEEcCCC-----EEEEECCCCCEeEEEecC
Confidence 67766544434 899999884333334443
No 131
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=65.30 E-value=60 Score=27.14 Aligned_cols=64 Identities=14% Similarity=0.307 Sum_probs=41.7
Q ss_pred CeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeC--CeEEEEE-eCCeEEEEECCCC
Q 041235 273 GSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRN--GEFFLES-SDNRLVLYDSRYE 338 (362)
Q Consensus 273 g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~--~~i~~~~-~~~~l~~yd~~t~ 338 (362)
|.+.+.+. .+.++.||.++...|..+..+.........+.+..+ +.+++.. .++.+..||++++
T Consensus 67 g~~l~s~s--~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 67 GTILASCS--YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp CSEEEEEE--TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred CCEEEEEc--CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 66666655 478999999987777766655433333344555444 5555544 4788899998765
No 132
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=65.17 E-value=70 Score=27.90 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=36.8
Q ss_pred EEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEEEE
Q 041235 288 SLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 288 ~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~i~ 344 (362)
.||+++-.+.+.+.+++... ...+.+..+|+.++..+.+.+.+||.+|++++.+.
T Consensus 287 ~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~ 341 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLR 341 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEE
T ss_pred eEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeE
Confidence 45555444455677776443 56667777888766655588999999999555554
No 133
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=64.78 E-value=86 Score=29.75 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=62.2
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCC--ceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSD--EVFEEI-KGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSF 287 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~--~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 287 (362)
..++..+|.+|..+..+ .|.++|..+ +.|+.- ..|..... ........++..+|++++... ...+
T Consensus 62 ~~P~v~~g~vyv~~~~~-----~v~AlD~~tG~~~W~~~~~~~~~~~~----~~~~~~~g~a~~~~~v~~~t~---dg~l 129 (582)
T 1flg_A 62 SQAIVSDGVIYVTASYS-----RLFALDAKTGKRLWTYNHRLPDDIRP----CCDVVNRGAAIYGDKVFFGTL---DASV 129 (582)
T ss_dssp CCCEEETTEEEEEETTT-----EEEEEESSSCCEEEEEECCCCTTCCC----SSCSCCCCCEEETTEEEEEET---TTEE
T ss_pred eccEEECCEEEEEcCCC-----CEEEEECCCCcEEEEEcCCCCccccc----ccccCCCccEEECCEEEEEeC---CCEE
Confidence 45688999999987755 599999865 456542 23322100 000011223456777666543 2333
Q ss_pred EEEEEcC--CeeeEEEEecCC--CcceeeEEEee--CCe-EEEEEe-------CCeEEEEECCCCeEEEE
Q 041235 288 SLWMMKG--GFWTKHLSFGPF--MEAYQPLGFWR--NGE-FFLESS-------DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 288 ~iW~l~~--~~W~~~~~i~~~--~~~~~~~~~~~--~~~-i~~~~~-------~~~l~~yd~~t~~~~~i 343 (362)
.-...+. ..|+....-... .....|+.... +++ .+++.. +..+++||.+|++..+.
T Consensus 130 ~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 130 VALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp EEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred EEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee
Confidence 2222222 456643211100 11134444322 132 344432 57899999999987764
No 134
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=64.56 E-value=1e+02 Score=29.69 Aligned_cols=116 Identities=8% Similarity=0.109 Sum_probs=60.9
Q ss_pred EECceEEEEeecCCCCccEEEEEECCCc---eeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEE
Q 041235 215 YLNGYCYWVASGHNSYNASILSFSMSDE---VFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWM 291 (362)
Q Consensus 215 ~~~G~lywl~~~~~~~~~~il~fD~~~~---~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~ 291 (362)
..++.+|+++..+ .....|+..|+.+. .|+.+ .|... . .. .....++.|.+.........+.+|.
T Consensus 289 ~~g~~l~~~t~~~-~~~~~l~~~d~~~~~~~~~~~l-~~~~~--------~-~~-~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 289 NKGSTLYLLTNRD-APNRRLVTVDAANPGPAHWRDL-IPERQ--------Q-VL-TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp EETTEEEEEECTT-CTTCEEEEEETTSCCGGGCEEE-ECCCS--------S-CE-EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred ccCCEEEEEECCC-CCCCEEEEEeCCCCCccccEEE-ecCCC--------C-EE-EEEEECCEEEEEEEECCeeEEEEEE
Confidence 3467888887654 23468999998863 35654 22221 1 12 4444556676666543333444444
Q ss_pred EcCCeeeEEEEecCCCcceeeEEEeeC-CeEEEEEe----CCeEEEEECCCCeEEEEE
Q 041235 292 MKGGFWTKHLSFGPFMEAYQPLGFWRN-GEFFLESS----DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 292 l~~~~W~~~~~i~~~~~~~~~~~~~~~-~~i~~~~~----~~~l~~yd~~t~~~~~i~ 344 (362)
++ ..+.+...++ .......+....+ +.+++... ...++.||+++++.+.+.
T Consensus 357 ~~-g~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 357 YE-GKRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp TT-SCEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred CC-CCeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 43 3333322222 1111122222223 34555544 378999999998876654
No 135
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=64.35 E-value=65 Score=27.41 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=40.9
Q ss_pred CeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeE
Q 041235 273 GSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 273 g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
+.+.+.+. .+..+.||.+++........+.-......-+.+..++.+++.. .++.+..||+++++.
T Consensus 48 ~~~l~tgs--~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~ 114 (321)
T 3ow8_A 48 SETVVTGS--LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ 114 (321)
T ss_dssp -CEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCEEEEEc--CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE
Confidence 44555554 5789999999875544444444222223344555566666554 478899999998764
No 136
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=63.37 E-value=71 Score=27.30 Aligned_cols=199 Identities=7% Similarity=0.022 Sum_probs=95.4
Q ss_pred eeeecccccEEEee-cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCC-CCCeEEEEEEEEecCCcccccC
Q 041235 102 NPLGPCDGIFCFFE-NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPT-TNDFKLVLILTLYDGKRLSVHD 179 (362)
Q Consensus 102 ~~~~s~~GLl~~~~-~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~-~~~ykvv~~~~~~~~~~~~~~~ 179 (362)
.+.++.+|.+.+-+ ...+.++|..+++...--.... ... ...+.+++. .+.+ ++... .+
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~------v~~~~~~~~~~~~~-l~s~s----~d------ 148 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS--ANE------IIYMYGHNEVNTEY-FIWAD----NR------ 148 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC--SSC------EEEEECCC---CCE-EEEEE----TT------
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC--CCC------EEEEEcCCCCCCCE-EEEEe----CC------
Confidence 45566667666655 4566777777776332211111 111 566777762 2233 33221 11
Q ss_pred CccEEEEEcCCCCceeccc-CcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCC
Q 041235 180 LLPVAIYNFSTNSWRDLEG-LFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTY 258 (362)
Q Consensus 180 ~~~~~vyss~~~~W~~~~~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~ 258 (362)
-.+.+|+.+++.-..... ...... ..-...-+|.+...+..+ ..|..+|+.+..-....+....
T Consensus 149 -g~i~~wd~~~~~~~~~~~~~~~~~i-----~~~~~~pdg~~lasg~~d----g~i~iwd~~~~~~~~~~~~~~h----- 213 (343)
T 3lrv_A 149 -GTIGFQSYEDDSQYIVHSAKSDVEY-----SSGVLHKDSLLLALYSPD----GILDVYNLSSPDQASSRFPVDE----- 213 (343)
T ss_dssp -CCEEEEESSSSCEEEEECCCSSCCC-----CEEEECTTSCEEEEECTT----SCEEEEESSCTTSCCEECCCCT-----
T ss_pred -CcEEEEECCCCcEEEEEecCCCCce-----EEEEECCCCCEEEEEcCC----CEEEEEECCCCCCCccEEeccC-----
Confidence 467888887654422111 100000 001112256555544332 3799999987654311222111
Q ss_pred CCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCC---cce--eeEEEeeCCeEEEEE-e-CCeE
Q 041235 259 DESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFM---EAY--QPLGFWRNGEFFLES-S-DNRL 330 (362)
Q Consensus 259 ~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~---~~~--~~~~~~~~~~i~~~~-~-~~~l 330 (362)
......+.- -+|...+... .+ .+.||.+.... ....+.... ... ..+++..++..++.. . ++.+
T Consensus 214 ---~~~v~~l~fs~~g~~l~s~~--~~-~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i 285 (343)
T 3lrv_A 214 ---EAKIKEVKFADNGYWMVVEC--DQ-TVVCFDLRKDV--GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSL 285 (343)
T ss_dssp ---TSCEEEEEECTTSSEEEEEE--SS-BEEEEETTSST--TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEE
T ss_pred ---CCCEEEEEEeCCCCEEEEEe--CC-eEEEEEcCCCC--cceeecccccccccccceEEEECCCCCEEEEecCCCCcE
Confidence 112223332 2566555554 23 99999987611 111111100 001 236666778877663 3 7788
Q ss_pred EEEECC--CCeEEE
Q 041235 331 VLYDSR--YEEIRD 342 (362)
Q Consensus 331 ~~yd~~--t~~~~~ 342 (362)
.+||.+ ++.|+.
T Consensus 286 ~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 286 TIYKFDKKTKNWTK 299 (343)
T ss_dssp EEEEECTTTCSEEE
T ss_pred EEEEEcccccceEe
Confidence 888874 456765
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=62.74 E-value=68 Score=26.86 Aligned_cols=99 Identities=9% Similarity=0.082 Sum_probs=54.5
Q ss_pred EEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEE-EEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCccee
Q 041235 233 SILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIG-IYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQ 311 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~ 311 (362)
.|..+|+.+.+...+..+... . ....+. .-+|+..++. ...+.+|.++.. ..+..+... ....
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~--------~-~~~~~~~s~dg~~l~~~----~~~v~~~d~~~~--~~~~~~~~~-~~~~ 283 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMD--------V-FYFSTAVNPAKTRAFGA----YNVLESFDLEKN--ASIKRVPLP-HSYY 283 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECS--------S-CEEEEEECTTSSEEEEE----ESEEEEEETTTT--EEEEEEECS-SCCC
T ss_pred ceEEEeCCCCCceEeecCCCC--------C-ceeeEEECCCCCEEEEe----CCeEEEEECCCC--cCcceecCC-Ccee
Confidence 588999998776544433221 0 111222 2355544443 357788877553 233333321 1233
Q ss_pred eEEEeeCCeE-EEEEeCCeEEEEECCCCeE-EEEEEec
Q 041235 312 PLGFWRNGEF-FLESSDNRLVLYDSRYEEI-RDLEITG 347 (362)
Q Consensus 312 ~~~~~~~~~i-~~~~~~~~l~~yd~~t~~~-~~i~~~~ 347 (362)
.+.+..+|+. ++...++.+.+||+++++. ..+...+
T Consensus 284 ~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred eEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 4556667775 4444578899999998765 4555543
No 138
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=62.14 E-value=13 Score=27.17 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=29.3
Q ss_pred CcEEEEecccc-ceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEE
Q 041235 117 ENIYLWNVSMN-EYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLIL 167 (362)
Q Consensus 117 ~~~~v~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 167 (362)
-++++.||.|+ .|+..-... . .+.+.+|+..+.|+|+++.
T Consensus 11 A~V~~~D~~tk~~W~p~g~~~-----~------~V~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 11 AHVFQIDPNTKKNWVPTSKHA-----V------TVSYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEEEECTTTSCSEEESCSSC-----E------EEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCCceEeCCCCc-----e------EEEEEEcCCCCEEEEEEcc
Confidence 36899999996 896432211 1 6678889988899999864
No 139
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=61.82 E-value=81 Score=27.45 Aligned_cols=182 Identities=13% Similarity=0.041 Sum_probs=92.6
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.|||+.+++.+....... . ...+.+.|.. .+ +.... . -.+.++...++.-..
T Consensus 156 d~~i~iwd~~~~~~~~~~~~~~----~------V~~v~fspdg-~~--l~s~s----~-------~~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIETRG----E------VKDLHFSTDG-KV--VAYIT----G-------SSLEVISTVTGSCIA 211 (365)
T ss_dssp SCEEEEEETTTTEEEEEEECSS----C------CCEEEECTTS-SE--EEEEC----S-------SCEEEEETTTCCEEE
T ss_pred CCEEEEeECCCCcEEEEeCCCC----c------eEEEEEccCC-ce--EEecc----c-------eeEEEEEeccCccee
Confidence 4678999999998776543221 1 3456666643 22 22211 1 244555555543322
Q ss_pred cccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEec---CCCCCCCCCCCCCCCceeEE-EEE
Q 041235 196 LEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEIK---GPNFPQITTYDESEMTSWRI-GIY 271 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~---~P~~~~~~~~~~~~~~~~~l-~~~ 271 (362)
........... ..-...-+|.....+.........+..+|+......... +.... .....+ ..-
T Consensus 212 ~~~~~~~~~~v---~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~V~~~~~Sp 279 (365)
T 4h5i_A 212 RKTDFDKNWSL---SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF---------KGITSMDVDM 279 (365)
T ss_dssp EECCCCTTEEE---EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC---------SCEEEEEECT
T ss_pred eeecCCCCCCE---EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCC---------CCeEeEEECC
Confidence 11100000000 011223356555554433222345666776665543321 22111 112223 223
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEec-CCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCC
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFG-PFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRY 337 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~-~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t 337 (362)
+|++.+... .+..+.||.++.. ..+..+. .......-+++.++|..++... ++.+-+||+.+
T Consensus 280 dg~~lasgs--~D~~V~iwd~~~~--~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 280 KGELAVLAS--NDNSIALVKLKDL--SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TSCEEEEEE--TTSCEEEEETTTT--EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCceEEEc--CCCEEEEEECCCC--cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 677666665 4788999988653 3444442 2233455677778898887654 78899999854
No 140
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=61.69 E-value=87 Score=29.89 Aligned_cols=31 Identities=10% Similarity=0.301 Sum_probs=23.7
Q ss_pred CccEEECceEEEEee-cCCCCccEEEEEEC-CC--ceeeE
Q 041235 211 TDNVYLNGYCYWVAS-GHNSYNASILSFSM-SD--EVFEE 246 (362)
Q Consensus 211 ~~~v~~~G~lywl~~-~~~~~~~~il~fD~-~~--~~~~~ 246 (362)
..++..+|.+|..+. ++ .|.++|. .+ +.|+.
T Consensus 56 ~tP~v~~g~vyv~~~~~~-----~v~AlD~~~tG~~lW~~ 90 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSFPN-----NTFALGLDDPGTILWQD 90 (599)
T ss_dssp SCCEEETTEEEEECSTTT-----CEEEEETTCTTSEEEEE
T ss_pred eccEEECCEEEEEeCCCC-----EEEEEeCCCCCcEEEEE
Confidence 457888999999877 55 7999998 54 45653
No 141
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=61.23 E-value=76 Score=26.94 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=62.8
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCC----C-----CCCCCCCceeEEEEE--cCeEEEEEecCCCC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQI----T-----TYDESEMTSWRIGIY--DGSLSLLYSEESGH 285 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~----~-----~~~~~~~~~~~l~~~--~g~L~l~~~~~~~~ 285 (362)
+|.++|..... ..|..||..++.++.+..+..... + ...........++.. +|.|+++... .
T Consensus 29 ~g~~l~v~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~---~ 101 (322)
T 2fp8_A 29 TNKGFYTSVQD----GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY---Y 101 (322)
T ss_dssp TCSSEEEECTT----SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT---T
T ss_pred CCCEEEEEcCC----CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC---C
Confidence 67777776542 379999999887776644322100 0 000000112345444 5788877542 2
Q ss_pred EEEEEEEcC--CeeeEEEEecCCC--cceeeEEEee-CCeEEEEEeC------------------CeEEEEECCCCeEEE
Q 041235 286 SFSLWMMKG--GFWTKHLSFGPFM--EAYQPLGFWR-NGEFFLESSD------------------NRLVLYDSRYEEIRD 342 (362)
Q Consensus 286 ~~~iW~l~~--~~W~~~~~i~~~~--~~~~~~~~~~-~~~i~~~~~~------------------~~l~~yd~~t~~~~~ 342 (362)
. |++++. ...+.+....... .....+.+.. +|.+++.... .+++.||+++++++.
T Consensus 102 ~--i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 102 H--LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp E--EEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred C--EEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 3 444443 2222222111111 1233466667 7888886532 569999999888765
Q ss_pred E
Q 041235 343 L 343 (362)
Q Consensus 343 i 343 (362)
+
T Consensus 180 ~ 180 (322)
T 2fp8_A 180 L 180 (322)
T ss_dssp E
T ss_pred e
Confidence 4
No 142
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=60.87 E-value=55 Score=27.95 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=44.4
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEEEEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~~i~ 344 (362)
+|++.+.+. .+..+.||.+.+ ..+..+..+........-+.+.+++.+++... ++.+..||..++.++.+.
T Consensus 118 ~g~~las~s--~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~ 191 (330)
T 2hes_X 118 DGYYLATCS--RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVA 191 (330)
T ss_dssp TSCEEEEEE--TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEe--CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEE
Confidence 455444444 477899999954 55666666553333344455556777666544 777888988877655443
No 143
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=60.59 E-value=88 Score=27.50 Aligned_cols=181 Identities=11% Similarity=0.005 Sum_probs=89.0
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcc-cccCCccEEEEEcCCCCce
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRL-SVHDLLPVAIYNFSTNSWR 194 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~-~~~~~~~~~vyss~~~~W~ 194 (362)
+..+.++|+.+++....-+... ...++.+++..+ +-+++-. ..+... .. -.+.+|+..++.-.
T Consensus 233 ~~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~g~-~l~~~~~--~~~~~~~~d---g~i~~~d~~~~~~~ 296 (433)
T 3bws_A 233 SEDISVIDRKTKLEIRKTDKIG----------LPRGLLLSKDGK-ELYIAQF--SASNQESGG---GRLGIYSMDKEKLI 296 (433)
T ss_dssp TTEEEEEETTTTEEEEECCCCS----------EEEEEEECTTSS-EEEEEEE--ESCTTCSCC---EEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCcEEEEecCCC----------CceEEEEcCCCC-EEEEEEC--CCCccccCC---CeEEEEECCCCcEE
Confidence 4678899998887654322211 145677777543 2222221 111100 00 36788888776332
Q ss_pred ecccCcccceeecCCCCccEEECc-eEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEEE-E
Q 041235 195 DLEGLFQMGHYYGSDSTDNVYLNG-YCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIGI-Y 271 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~~-~ 271 (362)
........+ ..-...-+| .+|..+.. ...|..||+.+.+.. .++.... ...+.. -
T Consensus 297 ~~~~~~~~~------~~~~~~~~g~~l~~~~~~----~~~v~v~d~~~~~~~~~~~~~~~------------~~~~~~s~ 354 (433)
T 3bws_A 297 DTIGPPGNK------RHIVSGNTENKIYVSDMC----CSKIEVYDLKEKKVQKSIPVFDK------------PNTIALSP 354 (433)
T ss_dssp EEEEEEECE------EEEEECSSTTEEEEEETT----TTEEEEEETTTTEEEEEEECSSS------------EEEEEECT
T ss_pred eeccCCCCc------ceEEECCCCCEEEEEecC----CCEEEEEECCCCcEEEEecCCCC------------CCeEEEcC
Confidence 211100000 011112245 35554333 238999999876543 3332211 123333 3
Q ss_pred cCeEEEEEecC-C------------CCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-e-CCeEEEEECC
Q 041235 272 DGSLSLLYSEE-S------------GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-S-DNRLVLYDSR 336 (362)
Q Consensus 272 ~g~L~l~~~~~-~------------~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~-~~~l~~yd~~ 336 (362)
+|+..++.... . +..+.+|.++..+ .+..+.. ......+.+..+|..++.. . ++.+.+||++
T Consensus 355 dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~--~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 355 DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT--VKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE--EEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCCEEEEEecCCCccccccccccccceEEEEEECCCCc--EEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 46544444321 1 2488888876533 3333332 2223455666777766544 3 7889999876
Q ss_pred C
Q 041235 337 Y 337 (362)
Q Consensus 337 t 337 (362)
.
T Consensus 432 ~ 432 (433)
T 3bws_A 432 G 432 (433)
T ss_dssp T
T ss_pred C
Confidence 3
No 144
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=60.57 E-value=77 Score=26.78 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=101.6
Q ss_pred ccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEE
Q 041235 107 CDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVA 184 (362)
Q Consensus 107 ~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 184 (362)
.+|-+.+.. +..++++||.+++...+..... .. ..++.+|+..+ ++... ..... .. ..+.
T Consensus 54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~------~~~i~~~~dg~---l~v~~--~~~~~-~~---~~i~ 115 (333)
T 2dg1_A 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK---AN------PAAIKIHKDGR---LFVCY--LGDFK-ST---GGIF 115 (333)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECSS---SS------EEEEEECTTSC---EEEEE--CTTSS-SC---CEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC---CC------cceEEECCCCc---EEEEe--CCCCC-CC---ceEE
Confidence 456555543 5679999999998776532111 11 56677777542 22221 11100 00 2566
Q ss_pred EEEcCCCCceec-ccCcccceeecCCCCccEE--ECceEEEEeecC--CCCccEEEEEECCCceeeEecCCCCCCCCCCC
Q 041235 185 IYNFSTNSWRDL-EGLFQMGHYYGSDSTDNVY--LNGYCYWVASGH--NSYNASILSFSMSDEVFEEIKGPNFPQITTYD 259 (362)
Q Consensus 185 vyss~~~~W~~~-~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~--~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~ 259 (362)
+|+..++.-+.. ...... .....+. -+|.+|..+..+ ......|..+|..+++...+.-. .
T Consensus 116 ~~d~~~~~~~~~~~~~~~~------~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~------ 181 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLSTA------YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--I------ 181 (333)
T ss_dssp EECTTSCSCEEEECSSSSC------CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--E------
T ss_pred EEeCCCCEEEEEEccCccC------CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--C------
Confidence 777766654422 111000 0011122 267776654321 01124789999887666544210 1
Q ss_pred CCCCceeEEE-EEcCe-EEEEEecCCCCEEEEEEEcC--CeeeEEE-Ee--cCC-CcceeeEEEeeCCeEEEEEe-CCeE
Q 041235 260 ESEMTSWRIG-IYDGS-LSLLYSEESGHSFSLWMMKG--GFWTKHL-SF--GPF-MEAYQPLGFWRNGEFFLESS-DNRL 330 (362)
Q Consensus 260 ~~~~~~~~l~-~~~g~-L~l~~~~~~~~~~~iW~l~~--~~W~~~~-~i--~~~-~~~~~~~~~~~~~~i~~~~~-~~~l 330 (362)
. ....+. .-+|+ |++... ....+.+|.++. ....... .+ ... ......+++..+|.+++... +..+
T Consensus 182 --~-~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 182 --S-VANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp --S-SEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred --C-cccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 0 011222 23555 555543 356788888753 2222111 11 111 11234456666788877754 5789
Q ss_pred EEEECCCCeEEEEEE
Q 041235 331 VLYDSRYEEIRDLEI 345 (362)
Q Consensus 331 ~~yd~~t~~~~~i~~ 345 (362)
..||++++.++.+..
T Consensus 257 ~~~d~~g~~~~~~~~ 271 (333)
T 2dg1_A 257 LVFNKRGYPIGQILI 271 (333)
T ss_dssp EEECTTSCEEEEEEC
T ss_pred EEECCCCCEEEEEEc
Confidence 999998777776654
No 145
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=59.43 E-value=87 Score=27.03 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=35.4
Q ss_pred CCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeE
Q 041235 284 GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 284 ~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
+..+.+|.+... ..+..+.........+.+..++.+++.. .++.+..||+++++.
T Consensus 313 ~~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 313 GSTIAVYTVYSG--EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp TTEEEEEETTTC--CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred CCEEEEEECcCC--cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 678999988652 3444554333344556677777776655 488899999998754
No 146
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=57.69 E-value=1.4e+02 Score=28.97 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=53.7
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE--EcCeEEEEEecCCCCEEEEEEEcC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI--YDGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
+|.|||..... ...|..+++....-+.+-.. .+ ... ..|+. .+|+|+++.. ....|.+..++.
T Consensus 507 ~g~ly~td~~~---~~~I~~~~~dG~~~~~l~~~-~l--------~~P-nGlavd~~~~~LY~aD~--~~~~I~~~d~dG 571 (699)
T 1n7d_A 507 HGFMYWTDWGT---PAKIKKGGLNGVDIYSLVTE-NI--------QWP-NGITLDLLSGRLYWVDS--KLHSISSIDVNG 571 (699)
T ss_dssp SSCCEECCCSS---SCCEEBCCSSSCCCCEESCS-SC--------SSC-CCEEECTTTCCEEEEET--TTTEEEEECSSS
T ss_pred CCcEEEcccCC---CCeEEEEeCCCCCeeEEEeC-CC--------CCc-cEEEEeccCCEEEEEec--CCCeEEEEccCC
Confidence 68999976432 23688888765443332110 11 000 12333 2466777664 344554444433
Q ss_pred CeeeEEEEecCCCcceeeEEEee-CCeEEEEEe-CCeEEEEECCCCeEEE
Q 041235 295 GFWTKHLSFGPFMEAYQPLGFWR-NGEFFLESS-DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 295 ~~W~~~~~i~~~~~~~~~~~~~~-~~~i~~~~~-~~~l~~yd~~t~~~~~ 342 (362)
..-..+ +........|.++.- .+.+|+... .++|..+|+.+++...
T Consensus 572 ~~~~~~--~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 572 GNRKTI--LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp SCCEEE--CCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred CceEEE--EecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence 211111 111112334444433 345666553 6789999998876543
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=57.59 E-value=84 Score=26.31 Aligned_cols=100 Identities=9% Similarity=0.071 Sum_probs=56.0
Q ss_pred EEEEEECCC-ceeeE-----ecCCCCCCCCCCCCCCCceeEEE-EEcCe-EEEEEecCCCCEEEEEEEcC--CeeeEEEE
Q 041235 233 SILSFSMSD-EVFEE-----IKGPNFPQITTYDESEMTSWRIG-IYDGS-LSLLYSEESGHSFSLWMMKG--GFWTKHLS 302 (362)
Q Consensus 233 ~il~fD~~~-~~~~~-----i~~P~~~~~~~~~~~~~~~~~l~-~~~g~-L~l~~~~~~~~~~~iW~l~~--~~W~~~~~ 302 (362)
.|..||+.+ ++... +..+... ....+. .-+|+ |++... ....+.+|.++. ..+.....
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~ 219 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEGA----------GPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQT 219 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTC----------CEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEE
T ss_pred EEEEEEecCCCceeeecccccccCCCC----------CcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEee
Confidence 799999887 55542 2333221 111232 23566 444432 577999999965 55544444
Q ss_pred ecCC-C-----cceeeEEEeeCCeEEE-EE-eCCeEEEEECC--CCeEEEEE
Q 041235 303 FGPF-M-----EAYQPLGFWRNGEFFL-ES-SDNRLVLYDSR--YEEIRDLE 344 (362)
Q Consensus 303 i~~~-~-----~~~~~~~~~~~~~i~~-~~-~~~~l~~yd~~--t~~~~~i~ 344 (362)
+... . .....+.+..+++.++ .. .++.+..||++ +++.+.+.
T Consensus 220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 220 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 3311 1 1122466667776554 44 36889999998 55665553
No 148
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=57.34 E-value=68 Score=26.99 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=43.2
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC-CeeeEEEEecCCCcceeeEEEeeCCe-EEEEE-eCCeEEEEEC-CCCeEEEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFGPFMEAYQPLGFWRNGE-FFLES-SDNRLVLYDS-RYEEIRDL 343 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~-~~~~l~~yd~-~t~~~~~i 343 (362)
+|.+.++.. .+..+.||.++. ........+.........+.+..++. .++.. .++.+..||+ ++++...+
T Consensus 22 ~~~~l~~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 95 (342)
T 1yfq_A 22 SKSLLLITS--WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL 95 (342)
T ss_dssp GGTEEEEEE--TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC
T ss_pred CCCEEEEEc--CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEec
Confidence 566555555 478999999987 31222222222223344556666777 55554 5888999999 88876544
No 149
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=56.72 E-value=5.7 Score=23.26 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=13.8
Q ss_pred CCCCCHHHHHHHHccCCc
Q 041235 4 YRELSHDLLVETLSRLPV 21 (362)
Q Consensus 4 ~~~LP~dll~~IL~rLp~ 21 (362)
+..||.|+.+|||+--..
T Consensus 21 F~~LP~dIQ~Ells~~~~ 38 (48)
T 2kwv_A 21 FKQLPADIQEEILSGKSR 38 (48)
T ss_dssp TTTSCHHHHHHHTTCCCS
T ss_pred HHHCcHHHHHHHHhcchH
Confidence 457999999999886543
No 150
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=56.33 E-value=1.5e+02 Score=28.92 Aligned_cols=209 Identities=8% Similarity=0.021 Sum_probs=97.5
Q ss_pred eeeccccc-EEEeecC-cEEEEeccccceecccCCCC--CCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCccccc
Q 041235 103 PLGPCDGI-FCFFENE-NIYLWNVSMNEYRIVTKRKA--RLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVH 178 (362)
Q Consensus 103 ~~~s~~GL-l~~~~~~-~~~v~NP~T~~~~~LP~~~~--~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~ 178 (362)
+....+|- |-+.... .++.+||.|+++..++.... ..... .....+..|...+. ++ .+.. ..
T Consensus 71 i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~----~~i~~i~~d~~~~g-~l-wi~t---~~----- 136 (781)
T 3v9f_A 71 VYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLIT----NDVTHITSSVQAGK-GL-WVCT---YY----- 136 (781)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSC----SCEEEEEECSSTTS-EE-EEEE---SS-----
T ss_pred EEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCccc----CcceEEEecCccCC-CE-EEEE---CC-----
Confidence 33445566 6666655 79999999999887642211 00000 01223333431011 12 2211 01
Q ss_pred CCccEEEEEcCCCCceecccCc--ccceeecCCCCccEE--ECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCC
Q 041235 179 DLLPVAIYNFSTNSWRDLEGLF--QMGHYYGSDSTDNVY--LNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQ 254 (362)
Q Consensus 179 ~~~~~~vyss~~~~W~~~~~~~--~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~ 254 (362)
..+..|+..++.++...... .++. .....+. -+|.++.-+... .+..||..++++..+.......
T Consensus 137 --~gl~~~~~~~~~~~~~~~~~~~~l~~----~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~~~~~~~~~~~ 205 (781)
T 3v9f_A 137 --RGIEYLDIATGKFTHYNKSTVPALPS----EQTWTATEAEDGKLYIGHVEG-----GLSILSLNDKSVKHFVHDPQNP 205 (781)
T ss_dssp --SCEEEEETTTTEEEEESTTTCTTCSC----CCEEEEEEEETTEEEEEETTT-----EEEEEETTTTEEEEECC-----
T ss_pred --CCeeEEECCCCeEEeeccCcccCCCc----cceEEEEECCCCCEEEEecCC-----CeEEEcCCCCceEeeecCCCCc
Confidence 34567777777776553311 1111 0111222 366665433333 6999999999887764221100
Q ss_pred CCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEec-----CCCcceeeEEEeeCCeEEEEEeCC
Q 041235 255 ITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFG-----PFMEAYQPLGFWRNGEFFLESSDN 328 (362)
Q Consensus 255 ~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~-----~~~~~~~~~~~~~~~~i~~~~~~~ 328 (362)
. .-.......+.+ .+|.|.+... . .+.++..+...+....... ........+....+|.+++.....
T Consensus 206 -~--~l~~~~i~~i~~d~~g~lwigt~---~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~ 278 (781)
T 3v9f_A 206 -N--SLPGNDVRCIYKDTNGNIWIGTS---K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELN 278 (781)
T ss_dssp ------CCSSEEEEEECTTCCEEEEET---T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSS
T ss_pred -c--cCCCCceeEEEEcCCCCEEEEeC---C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCC
Confidence 0 001112334444 3566776652 2 4555544335554432211 111223334444556666655558
Q ss_pred eEEEEECCCCeEEEE
Q 041235 329 RLVLYDSRYEEIRDL 343 (362)
Q Consensus 329 ~l~~yd~~t~~~~~i 343 (362)
.+..||+++++++.+
T Consensus 279 Gl~~~~~~~~~~~~~ 293 (781)
T 3v9f_A 279 GIMILDLQQNQFLLP 293 (781)
T ss_dssp CEEEEETTCC-----
T ss_pred CeEEECCCCCeeeee
Confidence 899999998877654
No 151
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=56.17 E-value=1e+02 Score=26.89 Aligned_cols=68 Identities=10% Similarity=0.189 Sum_probs=42.4
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCee-----eEEEEecCCCcceeeEEEeeCC-eEEEEE-eCCeEEEEECCCCeEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFW-----TKHLSFGPFMEAYQPLGFWRNG-EFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W-----~~~~~i~~~~~~~~~~~~~~~~-~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
+|.+.+.+. .+..+.||.+..... ..+..+.........+.+..++ .+++.. .++.+.+||+++++..
T Consensus 93 ~~~~l~s~s--~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 167 (402)
T 2aq5_A 93 NDNVIASGS--EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV 167 (402)
T ss_dssp CTTEEEEEE--TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEEe--CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc
Confidence 566666665 478999999987322 2233333222334445555665 465554 5788999999988654
No 152
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=55.96 E-value=1e+02 Score=26.87 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=54.4
Q ss_pred EEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEe-cCCC-c
Q 041235 233 SILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSF-GPFM-E 308 (362)
Q Consensus 233 ~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i-~~~~-~ 308 (362)
.|..+|+.+.+... +...... .....+.- -+|.+.++.. .+..+.||.+.... .+..+ .... .
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~--~~~~~~~~~~~~ 221 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHP---------DTIYSVDWSRDGALICTSC--RDKRVRVIEPRKGT--VVAEKDRPHEGT 221 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCC---------SCEEEEEECTTSSCEEEEE--TTSEEEEEETTTTE--EEEEEECSSCSS
T ss_pred EEEEEECCCCCccEEEecCCCC---------CceEEEEECCCCCEEEEEe--cCCcEEEEeCCCCc--eeeeeccCCCCC
Confidence 78999998876532 3211111 11223322 2566666555 47899999987633 33333 2222 2
Q ss_pred ceeeEEEeeCCeEEEEE----eCCeEEEEECCCCe
Q 041235 309 AYQPLGFWRNGEFFLES----SDNRLVLYDSRYEE 339 (362)
Q Consensus 309 ~~~~~~~~~~~~i~~~~----~~~~l~~yd~~t~~ 339 (362)
...-+.+..++.++... .++.+.+||+++..
T Consensus 222 ~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 222 RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred cceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 13344555678877765 57889999998754
No 153
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=55.83 E-value=3.2 Score=37.06 Aligned_cols=27 Identities=7% Similarity=-0.052 Sum_probs=18.6
Q ss_pred ccEEECceEEEEeecCCCCccEEEEEECCCce
Q 041235 212 DNVYLNGYCYWVASGHNSYNASILSFSMSDEV 243 (362)
Q Consensus 212 ~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~ 243 (362)
.++..+|.+|.-+.++ .|.++|..+++
T Consensus 4 sP~v~~~~v~~gs~dg-----~v~a~d~~tG~ 30 (369)
T 2hz6_A 4 TVTLPETLLFVSTLDG-----SLHAVSKRTGS 30 (369)
T ss_dssp ----CTTEEEEEETTS-----EEEEEETTTCC
T ss_pred CCeeeCCEEEEEcCCC-----EEEEEECCCCC
Confidence 4566788999887776 89999987643
No 154
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=55.83 E-value=1e+02 Score=26.64 Aligned_cols=103 Identities=9% Similarity=0.102 Sum_probs=53.9
Q ss_pred cEEEEEECCCcee-eEecCCCCCC---CCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEec--
Q 041235 232 ASILSFSMSDEVF-EEIKGPNFPQ---ITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFG-- 304 (362)
Q Consensus 232 ~~il~fD~~~~~~-~~i~~P~~~~---~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~-- 304 (362)
..|..||+.+.+. ..+..|.... ...+. .......+.- -+|++.+... .+..+.||.+... ..+..+.
T Consensus 258 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~--~~~~~~~~~ 332 (397)
T 1sq9_A 258 GCITLYETEFGERIGSLSVPTHSSQASLGEFA-HSSWVMSLSFNDSGETLCSAG--WDGKLRFWDVKTK--ERITTLNMH 332 (397)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBS-BSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTT--EEEEEEECC
T ss_pred ceEEEEECCCCcccceeccCcccccccccccc-cCCcEEEEEECCCCCEEEEEe--CCCeEEEEEcCCC--ceeEEEecc
Confidence 3899999887654 3344321100 00000 1112223332 2566655555 4789999998663 3334443
Q ss_pred ----CC---------------CcceeeEEEeeCC----------eEEEEE-eCCeEEEEECCCCe
Q 041235 305 ----PF---------------MEAYQPLGFWRNG----------EFFLES-SDNRLVLYDSRYEE 339 (362)
Q Consensus 305 ----~~---------------~~~~~~~~~~~~~----------~i~~~~-~~~~l~~yd~~t~~ 339 (362)
.. ......+.+..++ .+++.. .++.+.+||+++++
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 333 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp GGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 11 2223445566666 565554 58899999998764
No 155
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=55.43 E-value=1.5e+02 Score=28.51 Aligned_cols=143 Identities=10% Similarity=0.001 Sum_probs=76.2
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCce---eeEecCCCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEV---FEEIKGPNFPQITT 257 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~---~~~i~~P~~~~~~~ 257 (362)
..+.+.+..++.|+.+..... .....+..+|.+|..+... .....|..+|+.+.. |+.+-.+...
T Consensus 252 ~~l~~~~~~~~~~~~l~~~~~-------~~~~~~~~~g~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~~l~~~~~~---- 319 (695)
T 2bkl_A 252 NDVYWKRPGEKDFRLLVKGVG-------AKYEVHAWKDRFYVLTDEG-APRQRVFEVDPAKPARASWKEIVPEDSS---- 319 (695)
T ss_dssp EEEEEECTTCSSCEEEEECSS-------CCEEEEEETTEEEEEECTT-CTTCEEEEEBTTBCSGGGCEEEECCCSS----
T ss_pred eEEEEEcCCCCceEEeecCCC-------ceEEEEecCCcEEEEECCC-CCCCEEEEEeCCCCCccCCeEEecCCCC----
Confidence 345555555667776654211 1122344567766665432 234689999987654 6655322211
Q ss_pred CCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC-CeeeEEEEecCC-CcceeeEEEeeCCe-EEEEEe----CCeE
Q 041235 258 YDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFGPF-MEAYQPLGFWRNGE-FFLESS----DNRL 330 (362)
Q Consensus 258 ~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~-~~~~~~~~~~~~~~-i~~~~~----~~~l 330 (362)
.....+...+++|.+.... +....||.++- .. ....+... ......+....+++ +++... ...+
T Consensus 320 -----~~l~~~~~~~~~lv~~~~~--dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 320 -----ASLLSVSIVGGHLSLEYLK--DATSEVRVATLKGK--PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp -----CEEEEEEEETTEEEEEEEE--TTEEEEEEEETTCC--EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred -----CeEEEEEEECCEEEEEEEE--CCEEEEEEEeCCCC--eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 1122334448888777664 66778888763 22 23334321 11122222233454 444432 4679
Q ss_pred EEEECCCCeEEEEE
Q 041235 331 VLYDSRYEEIRDLE 344 (362)
Q Consensus 331 ~~yd~~t~~~~~i~ 344 (362)
+.||+++++.+.+.
T Consensus 391 ~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 391 YKTSVSTGKSELWA 404 (695)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCcEEEEe
Confidence 99999998876554
No 156
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=55.12 E-value=59 Score=27.51 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=42.7
Q ss_pred EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEee--CCeEEEEE-eCCeEEEEECCCCeEEE
Q 041235 271 YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWR--NGEFFLES-SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 271 ~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~--~~~i~~~~-~~~~l~~yd~~t~~~~~ 342 (362)
.+|++.+.+. .+..+.||.++......+..+.-......-+.+.. ++.+++.. .++.+..||+++++++.
T Consensus 23 ~~g~~lasgs--~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 23 YYGTRLATCS--SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK 95 (316)
T ss_dssp GGGCEEEEEE--TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred CCCCEEEEEe--CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence 3566655555 57899999998754444444442222233344432 35655544 48889999999876543
No 157
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=54.72 E-value=1.2e+02 Score=27.08 Aligned_cols=49 Identities=6% Similarity=0.131 Sum_probs=28.1
Q ss_pred EEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcC
Q 041235 233 SILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 233 ~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
.|..+|+.+..... +..... ....+ ..-+|...++.. .+..+.||.++.
T Consensus 291 ~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~sg~--~dg~i~vwd~~~ 341 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSGHTD-----------RIYSTIYDHERKRCISAS--MDTTIRIWDLEN 341 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSS-----------CEEEEEEETTTTEEEEEE--TTSCEEEEETTT
T ss_pred eEEEEECCCCcEEEEecCCCC-----------CEEEEEEcCCCCEEEEEe--CCCcEEEEECCC
Confidence 79999998766532 222111 12233 233566655555 467899998865
No 158
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=54.10 E-value=24 Score=25.38 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=29.3
Q ss_pred cEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEE
Q 041235 118 NIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLIL 167 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 167 (362)
.+++.+|.|++|...-... + ...+.+..|...+.|+|+...
T Consensus 12 ~V~~~d~~~~~W~p~~~~~-----g----~s~V~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 12 AVMVYDDANKKWVPAGGST-----G----FSRVHIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEETTTTEEEEGGGCC-----S----CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCCceEECCCCC-----C----ceEEEEEEECCCCEEEEEEEE
Confidence 6899999999875433211 1 125778899888899999874
No 159
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=54.00 E-value=1.3e+02 Score=27.30 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=45.1
Q ss_pred CeEEEEEecCC-----CCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCe-EEEEEe--CCeEEEEECCCCeEE-EE
Q 041235 273 GSLSLLYSEES-----GHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGE-FFLESS--DNRLVLYDSRYEEIR-DL 343 (362)
Q Consensus 273 g~L~l~~~~~~-----~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~~--~~~l~~yd~~t~~~~-~i 343 (362)
++|++...... ...=.||+++-.+++.+.+|+... ....+.+..+|+ .++..+ ++.+.++|.+|.+.. .|
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 55666654211 124468888777788888886321 234455567777 655544 799999999998764 44
No 160
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=53.21 E-value=1.1e+02 Score=26.34 Aligned_cols=175 Identities=12% Similarity=0.149 Sum_probs=86.2
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.+||..+++....-.... .. ...+.+.+..+.-.++... .+ -.+.+++.+++.-..
T Consensus 175 D~~v~lwd~~~~~~~~~~~~h~---~~------v~~~~~~~~~~g~~l~sgs----~D-------g~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQSFHGHG---AD------VLCLDLAPSETGNTFVSGG----CD-------KKAMVWDMRSGQCVQ 234 (354)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SC------EEEEEECCCSSCCEEEEEE----TT-------SCEEEEETTTCCEEE
T ss_pred CCcEEEEeCCCCeEEEEEcCCC---CC------eEEEEEEeCCCCCEEEEEe----CC-------CeEEEEECCCCcEEE
Confidence 6789999998887543211111 11 3445554432222333332 11 467888887764322
Q ss_pred cccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEE-EEE
Q 041235 196 LEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRI-GIY 271 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l-~~~ 271 (362)
.-..-. ....++.+ +|.....+.. ...|..+|+.+..-.. +...... .....+ ...
T Consensus 235 ~~~~h~-------~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~~~~~~~~~~~~~~~---------~~~~~~~~s~ 294 (354)
T 2pbi_B 235 AFETHE-------SDVNSVRYYPSGDAFASGSD----DATCRLYDLRADREVAIYSKESII---------FGASSVDFSL 294 (354)
T ss_dssp EECCCS-------SCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEEECCTTCC---------SCEEEEEECT
T ss_pred EecCCC-------CCeEEEEEeCCCCEEEEEeC----CCeEEEEECCCCcEEEEEcCCCcc---------cceeEEEEeC
Confidence 111000 01112222 4544333333 2378889988765432 2221111 111122 223
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYD 334 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd 334 (362)
+|.+.++.. .+..+.||.+... ..+..+.........+.+.+++..++... ++.+.+||
T Consensus 295 ~g~~l~~g~--~d~~i~vwd~~~~--~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGY--NDYTINVWDVLKG--SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEE--TTSCEEEEETTTC--SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEE--CCCcEEEEECCCC--ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 577766665 4779999988652 23333432233344556666777666544 66676664
No 161
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=52.84 E-value=97 Score=25.58 Aligned_cols=66 Identities=9% Similarity=0.176 Sum_probs=39.1
Q ss_pred cccccEEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEE
Q 041235 106 PCDGIFCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAI 185 (362)
Q Consensus 106 s~~GLl~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 185 (362)
|.+|+|-...+..+.|||..|++...+-..... ... ...+.+.+.. ++-+.+- .+ -.+.+
T Consensus 34 S~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~-~~~------V~~v~~~~~~-~~l~sgs-----~D-------g~v~i 93 (318)
T 4ggc_A 34 SSGNVLAVALDNSVYLWSASSGDILQLLQMEQP-GEY------ISSVAWIKEG-NYLAVGT-----SS-------AEVQL 93 (318)
T ss_dssp CTTSEEEEEETTEEEEEETTTCCEEEEEECCST-TCC------EEEEEECTTS-SEEEEEE-----TT-------SEEEE
T ss_pred CCCCEEEEEeCCEEEEEECCCCCEEEEEEecCC-CCe------EEEEEECCCC-CEEEEEE-----CC-------CcEEE
Confidence 567776666678899999999987654332211 111 4567776643 3322221 11 36777
Q ss_pred EEcCCC
Q 041235 186 YNFSTN 191 (362)
Q Consensus 186 yss~~~ 191 (362)
++..++
T Consensus 94 w~~~~~ 99 (318)
T 4ggc_A 94 WDVQQQ 99 (318)
T ss_dssp EETTTT
T ss_pred eecCCc
Confidence 877765
No 162
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=52.54 E-value=1.1e+02 Score=25.99 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=55.4
Q ss_pred EEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcce
Q 041235 233 SILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAY 310 (362)
Q Consensus 233 ~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~ 310 (362)
.|..+|+.+.+.. .+..... ....+.- -+|++.+... .+..+.||.+.... ....+.......
T Consensus 187 ~i~iwd~~~~~~~~~~~~h~~-----------~v~~l~~spd~~~l~s~s--~dg~i~iwd~~~~~--~~~~~~~h~~~v 251 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEGHAM-----------PIRSLTFSPDSQLLVTAS--DDGYIKIYDVQHAN--LAGTLSGHASWV 251 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSS-----------CCCEEEECTTSCEEEEEC--TTSCEEEEETTTCC--EEEEECCCSSCE
T ss_pred eEEEEECCCCcEEEEEcccCC-----------ceeEEEEcCCCCEEEEEc--CCCeEEEEECCCcc--eeEEEcCCCCce
Confidence 7888999877653 2332111 1122322 3566655554 47789999987632 233343222334
Q ss_pred eeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 311 QPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 311 ~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
.-+.+..++..++.. .++.+.+||+++++..
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 445666677766654 4788999999988653
No 163
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=51.76 E-value=17 Score=26.40 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=29.6
Q ss_pred cEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEE
Q 041235 118 NIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLIL 167 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 167 (362)
++++++|.|++|. |..... .+ ...+.+..|+..+.|+|+...
T Consensus 12 ~V~~~d~~~~~W~--p~~~g~--~g----vs~V~~~~d~~~~~yrI~~~~ 53 (115)
T 1egx_A 12 TVMLYDDGNKRWL--PAGTGP--QA----FSRVQIYHNPTANSFRVVGRK 53 (115)
T ss_dssp ECBEECTTTSSCC--BSSCSC--CC----CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCCcee--ECCCCC--CC----ccEEEEEEeCCCCEEEEEEEE
Confidence 5788999999975 443210 11 125778889988999999874
No 164
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=51.67 E-value=1.2e+02 Score=26.43 Aligned_cols=195 Identities=16% Similarity=0.218 Sum_probs=94.1
Q ss_pred ccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEE
Q 041235 107 CDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVA 184 (362)
Q Consensus 107 ~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 184 (362)
.+|-.++.. +..+.|||..+++....-.... .. ...+.+.+..+ +++... .+ -.+.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~---~~------v~~~~~~p~~~--~l~s~s----~d-------~~v~ 190 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHE---QD------IYSLDYFPSGD--KLVSGS----GD-------RTVR 190 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SC------EEEEEECTTSS--EEEEEE----TT-------SEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCC---CC------EEEEEEcCCCC--EEEEec----CC-------CcEE
Confidence 355443332 6789999999887654322111 11 55677766432 233221 11 4677
Q ss_pred EEEcCCCCceecccCcccceeecCCCCccEEE---CceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCC
Q 041235 185 IYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL---NGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDE 260 (362)
Q Consensus 185 vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~ 260 (362)
+++.+++.-...-... .....+.+ +|.+...+..+ ..|..+|+.++... .+..+.... ..
T Consensus 191 iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~~~s~d----~~v~iwd~~~~~~~~~~~~~~~~~----~~ 254 (393)
T 1erj_A 191 IWDLRTGQCSLTLSIE--------DGVTTVAVSPGDGKYIAAGSLD----RAVRVWDSETGFLVERLDSENESG----TG 254 (393)
T ss_dssp EEETTTTEEEEEEECS--------SCEEEEEECSTTCCEEEEEETT----SCEEEEETTTCCEEEEEC----------CC
T ss_pred EEECCCCeeEEEEEcC--------CCcEEEEEECCCCCEEEEEcCC----CcEEEEECCCCcEEEeecccccCC----CC
Confidence 8887765432211100 00011111 45544444332 37888998876542 333222110 01
Q ss_pred CCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCe----------eeEEEEecCCCcceeeEEEeeCCeEEEEE-eCC
Q 041235 261 SEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGF----------WTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDN 328 (362)
Q Consensus 261 ~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~----------W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~ 328 (362)
.......+.- -+|++.+... .+..+.||.+.... ......+.........+++..++..++.. .++
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s--~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGS--LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEE--TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CCCCEEEEEECCCCCEEEEEe--CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence 1112223322 2566655555 57899999987511 11111221112223345555667666654 478
Q ss_pred eEEEEECCCCeEE
Q 041235 329 RLVLYDSRYEEIR 341 (362)
Q Consensus 329 ~l~~yd~~t~~~~ 341 (362)
.+.+||.++++..
T Consensus 333 ~v~iwd~~~~~~~ 345 (393)
T 1erj_A 333 GVLFWDKKSGNPL 345 (393)
T ss_dssp EEEEEETTTCCEE
T ss_pred eEEEEECCCCeEE
Confidence 8999999987643
No 165
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=51.56 E-value=1.1e+02 Score=25.64 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=42.5
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~ 342 (362)
++.+.+... .+..+.||.+... ..+..+.........+.+.+++.+++.. .++.+..||.++++...
T Consensus 197 ~~~~l~s~s--~D~~i~iWd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 197 DKPYMITAS--DDLTIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp TCCEEEEEE--TTSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCEEEEEc--CCCeEEEEeCCCC--ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 444544444 5789999998663 2344444323333445566677776655 47889999999987654
No 166
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=51.01 E-value=22 Score=27.71 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=28.4
Q ss_pred cEEEEecccc-ceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEE
Q 041235 118 NIYLWNVSMN-EYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLIL 167 (362)
Q Consensus 118 ~~~v~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 167 (362)
++++.||.|+ +|+..-... . .+.+.+|...+.|+|+++.
T Consensus 17 ~Vm~~D~~tk~~WvP~g~~~-----~------~V~i~~d~~rnsyRIvg~~ 56 (168)
T 1i2h_A 17 HVFQIDPNTKKNWVPTSKHA-----V------TVSYFYDSTRNVYRIISLD 56 (168)
T ss_dssp EEEEECTTSSCCSEESCSSC-----E------EEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCCCceeecCCCC-----e------EEEEEEcCCCCEEEEEEcc
Confidence 6899999997 896432221 1 5567789988899999864
No 167
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=50.78 E-value=1.2e+02 Score=25.88 Aligned_cols=67 Identities=7% Similarity=-0.042 Sum_probs=41.0
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
+|.+.+.+. .+..+.+|.++...-....... ......-+.+..++.++... .++.+.+||+++++..
T Consensus 138 ~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 138 NTEYFIWAD--NRGTIGFQSYEDDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp -CCEEEEEE--TTCCEEEEESSSSCEEEEECCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred CCCEEEEEe--CCCcEEEEECCCCcEEEEEecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 455555555 4778999999773222222111 12224455666778877764 5788999999987643
No 168
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=50.07 E-value=1.3e+02 Score=26.39 Aligned_cols=222 Identities=11% Similarity=-0.006 Sum_probs=0.0
Q ss_pred eeeecccccEEEee--------------cCcEEEEecc--ccceecccCCC--CCCCCCCccceeeeEEeecCC-CCCeE
Q 041235 102 NPLGPCDGIFCFFE--------------NENIYLWNVS--MNEYRIVTKRK--ARLPCNTSIYCYNFGLGLDPT-TNDFK 162 (362)
Q Consensus 102 ~~~~s~~GLl~~~~--------------~~~~~v~NP~--T~~~~~LP~~~--~~~~~~~~~~~~~~~l~~d~~-~~~yk 162 (362)
.+.-.-+|++.+.. ...++++||. +.+.+.|.... ......+ .+|+.+.+. .+..+
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~-----PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFN-----PHGISTFIDDDNTVY 128 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCC-----EEEEEEEECTTCCEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCcee-----eeeeEEEECCCCcEE
Q ss_pred EEEEEEEecCCcccccCCccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEee-----------------
Q 041235 163 LVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVAS----------------- 225 (362)
Q Consensus 163 vv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~----------------- 225 (362)
++.+........ ..+.-++.+++....+......+... .+--.+.-+|.+|.-..
T Consensus 129 L~Vvnh~~~~s~------ielf~~d~~~~~~~~~~~~~g~~~~~--pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 129 LLVVNHPGSSST------VEVFKFQEEEKSLLHLKTIRHKLLPS--VNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEEECSTTCCE------EEEEEEETTTTEEEEEEEECCTTCSS--EEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCe------EEEEEEECCCCEEEEEeccccCCCCC--CceEEEeCCCCEEecCCcEeCCcccccchhhccC
Q ss_pred -cCCCCccEEEEEECCCcee--eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC-CeeeEEE
Q 041235 226 -GHNSYNASILSFSMSDEVF--EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG-GFWTKHL 301 (362)
Q Consensus 226 -~~~~~~~~il~fD~~~~~~--~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~ 301 (362)
.+ .+..||..+-+- ..+..|..+ .+.--+..|+++.. ....+..+.+++ .+.....
T Consensus 201 ~~g-----~vyr~d~~~~~~~~~~l~~pNGi-------------a~spDg~~lYvadt--~~~~I~~~~~~~~g~l~~~~ 260 (355)
T 3sre_A 201 AWS-----FVTYYSPNDVRVVAEGFDFANGI-------------NISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLR 260 (355)
T ss_dssp CCE-----EEEEECTTCCEEEEEEESSEEEE-------------EECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEE
T ss_pred Ccc-----EEEEEECCeEEEeecCCcccCcc-------------eECCCCCEEEEEeC--CCCeEEEEEECCCCcEecCE
Q ss_pred EecCCCcceeeEEEee-CCeEEE-EE-eCCeEEEEECC---CCeEEEEEEeccccee--eeeee
Q 041235 302 SFGPFMEAYQPLGFWR-NGEFFL-ES-SDNRLVLYDSR---YEEIRDLEITGIWFSV--NILKE 357 (362)
Q Consensus 302 ~i~~~~~~~~~~~~~~-~~~i~~-~~-~~~~l~~yd~~---t~~~~~i~~~~~~~~~--~~y~~ 357 (362)
.+ ........+.+.. +|.+++ .. ...+++.||++ ...+-+|+........ .+|.+
T Consensus 261 ~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~d 323 (355)
T 3sre_A 261 VL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAE 323 (355)
T ss_dssp EE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEE
T ss_pred EE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEEEEc
No 169
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=50.00 E-value=1.2e+02 Score=25.65 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=42.2
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~ 342 (362)
+|++.++.. .+..+.+|.+... ...+..+.........+.+..++..++.. .++.+.+||+++++...
T Consensus 186 ~~~~l~~~~--~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 186 KGKYIIAGH--KDGKISKYDVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp GGCEEEEEE--TTSEEEEEETTTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEc--CCCEEEEEECCCC-cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 455555554 4678999988761 22333343333334455666677766554 57889999999876543
No 170
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=48.77 E-value=1.1e+02 Score=24.98 Aligned_cols=194 Identities=10% Similarity=0.047 Sum_probs=96.3
Q ss_pred ecccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCcc
Q 041235 105 GPCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLP 182 (362)
Q Consensus 105 ~s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 182 (362)
+..+|.|.+.+ ...+.++++.++....+-... .. ...++.+|+..+. ++... ... ..
T Consensus 44 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---~~------~p~~ia~d~~~~~--lyv~d---~~~-------~~ 102 (267)
T 1npe_A 44 DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD---LG------SPEGIALDHLGRT--IFWTD---SQL-------DR 102 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT---CC------CEEEEEEETTTTE--EEEEE---TTT-------TE
T ss_pred ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC---CC------CccEEEEEecCCe--EEEEE---CCC-------CE
Confidence 34456666655 457888888766533322111 11 2567888876443 22221 111 36
Q ss_pred EEEEEcCCCCceecccCcccceeecCCCCccEEE---CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCC
Q 041235 183 VAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL---NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYD 259 (362)
Q Consensus 183 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~ 259 (362)
+.+++..+..-+.+.. ..+ ....++.+ +|.+||..... ....|..+++.....+.+... ..
T Consensus 103 I~~~~~~g~~~~~~~~-~~~------~~P~~i~vd~~~g~lyv~~~~~--~~~~I~~~~~dg~~~~~~~~~-~~------ 166 (267)
T 1npe_A 103 IEVAKMDGTQRRVLFD-TGL------VNPRGIVTDPVRGNLYWTDWNR--DNPKIETSHMDGTNRRILAQD-NL------ 166 (267)
T ss_dssp EEEEETTSCSCEEEEC-SSC------SSEEEEEEETTTTEEEEEECCS--SSCEEEEEETTSCCCEEEECT-TC------
T ss_pred EEEEEcCCCCEEEEEE-CCC------CCccEEEEeeCCCEEEEEECCC--CCcEEEEEecCCCCcEEEEEC-CC------
Confidence 6777766433222111 110 11123333 68999987541 123788888876554443211 11
Q ss_pred CCCCceeEEEEE--cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEee-CCeEEEEEe-CCeEEEEEC
Q 041235 260 ESEMTSWRIGIY--DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWR-NGEFFLESS-DNRLVLYDS 335 (362)
Q Consensus 260 ~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~i~~~~~-~~~l~~yd~ 335 (362)
. .-..++.. ++.|++... ....+.+..++... ....+. ....|.++.. ++.+++... .+++..+|+
T Consensus 167 --~-~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~--~~~~~~---~~~~P~gi~~d~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 167 --G-LPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPG--RRKVLE---GLQYPFAVTSYGKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp --S-CEEEEEEETTTTEEEEEET--TTTEEEEEETTEEE--EEEEEE---CCCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred --C-CCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCc--eEEEec---CCCCceEEEEeCCEEEEEECCCCeEEEEeC
Confidence 1 11233333 456777765 34555554443211 111111 1234445443 455666654 688999999
Q ss_pred CCCeE-EEEEE
Q 041235 336 RYEEI-RDLEI 345 (362)
Q Consensus 336 ~t~~~-~~i~~ 345 (362)
++++. +.|..
T Consensus 237 ~~g~~~~~i~~ 247 (267)
T 1npe_A 237 AISKEMDTFHP 247 (267)
T ss_dssp TTTEEEEEECC
T ss_pred CCCCceEEEcc
Confidence 98765 45543
No 171
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=48.59 E-value=1.3e+02 Score=25.66 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=54.3
Q ss_pred EEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCc
Q 041235 233 SILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFME 308 (362)
Q Consensus 233 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~ 308 (362)
.|..+|+.+..- ..++.... ....+ ..-+|.+.+... .+..+.||.++. ........+.....
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~--~d~~v~iw~~~~~~~~~~~~~~~~~h~~ 144 (340)
T 1got_B 78 KLIIWDSYTTNKVHAIPLRSS-----------WVMTCAYAPSGNYVACGG--LDNICSIYNLKTREGNVRVSRELAGHTG 144 (340)
T ss_dssp EEEEEETTTCCEEEEEECSSS-----------CEEEEEECTTSSEEEEEE--TTCEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred cEEEEECCCCCcceEeecCCc-----------cEEEEEECCCCCEEEEEe--CCCeEEEEECccCCCcceeEEEecCCCc
Confidence 788888776543 22332211 11122 223566555555 478999999876 23333333332222
Q ss_pred ceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEE
Q 041235 309 AYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIR 341 (362)
Q Consensus 309 ~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~ 341 (362)
....+.+..++.++....++.+..||+++++..
T Consensus 145 ~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~ 177 (340)
T 1got_B 145 YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp CEEEEEEEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred cEEEEEECCCCcEEEEECCCcEEEEECCCCcEE
Confidence 233344445677666666888999999988654
No 172
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=48.55 E-value=1.3e+02 Score=25.88 Aligned_cols=187 Identities=6% Similarity=-0.005 Sum_probs=88.8
Q ss_pred cccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccE
Q 041235 106 PCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPV 183 (362)
Q Consensus 106 s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 183 (362)
+.+|-.++.. +..+.|||..+++....-.... .. ...+.+.+....+ ++... .. -.+
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~---~~------v~~v~~s~~~~~~-~~s~~----~d-------g~v 206 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS---SE------VNCVAACPGKDTI-FLSCG----ED-------GRI 206 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SC------EEEEEECTTCSSC-EEEEE----TT-------SCE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---CC------EEEEEEccCCCce-eeeec----cC-------Cce
Confidence 3455444433 5678999999887554322211 11 4455555543333 22221 11 366
Q ss_pred EEEEcCCCCceecccCcccceeecCCCCccEEE---CceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCC
Q 041235 184 AIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL---NGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYD 259 (362)
Q Consensus 184 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~ 259 (362)
.+++.+++.-.......... ....++.+ ++.+...+.. ...|..+|+.+.+- ..+.....
T Consensus 207 ~~wd~~~~~~~~~~~~~~~~-----~~v~~v~~sp~~~~~la~g~~----d~~i~~wd~~~~~~~~~~~~~~~------- 270 (357)
T 4g56_B 207 LLWDTRKPKPATRIDFCASD-----TIPTSVTWHPEKDDTFACGDE----TGNVSLVNIKNPDSAQTSAVHSQ------- 270 (357)
T ss_dssp EECCTTSSSCBCBCCCTTCC-----SCEEEEEECTTSTTEEEEEES----SSCEEEEESSCGGGCEEECCCSS-------
T ss_pred EEEECCCCceeeeeeecccc-----ccccchhhhhcccceEEEeec----ccceeEEECCCCcEeEEEeccce-------
Confidence 77777665322111100000 00112222 2333333332 22688899887543 22322211
Q ss_pred CCCCceeEEEE-EcC-eEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEee-CCeEEEEE-eCCeEEEEEC
Q 041235 260 ESEMTSWRIGI-YDG-SLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWR-NGEFFLES-SDNRLVLYDS 335 (362)
Q Consensus 260 ~~~~~~~~l~~-~~g-~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~i~~~~-~~~~l~~yd~ 335 (362)
....+.- -+| ++.+... .+.++.||.++..+ .+..+.. .....-+++.+ ++.+++.. .++.+..||+
T Consensus 271 ----~v~~l~~sp~~~~~lasgs--~D~~i~iwd~~~~~--~~~~~~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 271 ----NITGLAYSYHSSPFLASIS--EDCTVAVLDADFSE--VFRDLSH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp ----CEEEEEECSSSSCCEEEEE--TTSCEEEECTTSCE--EEEECCC-SSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred ----eEEEEEEcCCCCCEEEEEe--CCCEEEEEECCCCc--EeEECCC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 1223332 245 4444444 46789999775532 2333332 22334455554 56666654 5889999998
Q ss_pred CCC
Q 041235 336 RYE 338 (362)
Q Consensus 336 ~t~ 338 (362)
.++
T Consensus 342 ~~~ 344 (357)
T 4g56_B 342 PSE 344 (357)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 173
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=47.89 E-value=1.3e+02 Score=25.58 Aligned_cols=189 Identities=10% Similarity=0.010 Sum_probs=0.0
Q ss_pred cEEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcC
Q 041235 110 IFCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFS 189 (362)
Q Consensus 110 Ll~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~ 189 (362)
.|++.....+.+.++.+++...+-+.... ..++.+|+..+.-.+.-... -.+..++..
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~----------p~g~~~d~~~~~ly~~D~~~------------~~I~~~~~~ 60 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRN----------VVALDTEVASNRIYWSDLSQ------------RMICSTQLD 60 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECSCSS----------EEEEEEETTTTEEEEEETTT------------TEEEEEEC-
T ss_pred EEEEECCCeEEEEECCCcceEehhcCCCc----------eEEEEEEeCCCEEEEEECCC------------CcEEEEECC
Q ss_pred C----CCceeccc-CcccceeecCCCCccEE-ECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCC
Q 041235 190 T----NSWRDLEG-LFQMGHYYGSDSTDNVY-LNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEM 263 (362)
Q Consensus 190 ~----~~W~~~~~-~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~ 263 (362)
+ ..-+.+-. ....+... ++- .+|.+||...... .|..+|+....-..+--....
T Consensus 61 g~~~~~~~~~~~~~~~~~p~gl------avd~~~~~ly~~d~~~~----~I~~~~~~g~~~~~~~~~~~~---------- 120 (316)
T 1ijq_A 61 RAHGVSSYDTVISRDIQAPDGL------AVDWIHSNIYWTDSVLG----TVSVADTKGVKRKTLFRENGS---------- 120 (316)
T ss_dssp -------CEEEECSSCSCCCEE------EEETTTTEEEEEETTTT----EEEEEETTSSSEEEEEECTTC----------
T ss_pred CCCCCcccEEEEeCCCCCcCEE------EEeecCCeEEEEECCCC----EEEEEeCCCCceEEEEECCCC----------
Q ss_pred ceeEEEEE--cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEe-eCCeEEEEEe-CCeEEEEECCCCe
Q 041235 264 TSWRIGIY--DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFW-RNGEFFLESS-DNRLVLYDSRYEE 339 (362)
Q Consensus 264 ~~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~i~~~~~-~~~l~~yd~~t~~ 339 (362)
....++.. +|.|+.... ...-.|++.+-..=....-+...-.....+++. .++.+|+... ..++..+|++.+.
T Consensus 121 ~P~~iavdp~~g~ly~~d~---~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 121 KPRAIVVDPVHGFMYWTDW---GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 197 (316)
T ss_dssp CEEEEEEETTTTEEEEEEC---SSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CcceEEeCCCCCEEEEEcc---CCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc
Q ss_pred EEEE
Q 041235 340 IRDL 343 (362)
Q Consensus 340 ~~~i 343 (362)
.+.+
T Consensus 198 ~~~~ 201 (316)
T 1ijq_A 198 RKTI 201 (316)
T ss_dssp CEEE
T ss_pred eEEE
No 174
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=47.52 E-value=1.7e+02 Score=26.85 Aligned_cols=96 Identities=13% Similarity=0.289 Sum_probs=55.0
Q ss_pred EEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCccee
Q 041235 233 SILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQ 311 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~ 311 (362)
.|..||...+....+..... ....+.. -+|++.+... .+..+.+|.++.. .+..+........
T Consensus 408 ~v~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~d~~~l~~~~--~d~~v~~w~~~~~---~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 408 TVKLWNRNGQLLQTLTGHSS-----------SVWGVAFSPDDQTIASAS--DDKTVKLWNRNGQ---LLQTLTGHSSSVR 471 (577)
T ss_dssp EEEEECTTCCEEEEEECCSS-----------CEEEEEECTTSSEEEEEE--TTSEEEEEETTSC---EEEEEECCSSCEE
T ss_pred EEEEEeCCCCEEEEecCCCC-----------CeEEEEECCCCCEEEEEc--CCCEEEEEECCCC---EEEEEcCCCCCEE
Confidence 67778876555544432211 1122322 3566555554 4778999986542 2233333333344
Q ss_pred eEEEeeCCeEEEEE-eCCeEEEEECCCCeEEEEE
Q 041235 312 PLGFWRNGEFFLES-SDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 312 ~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~i~ 344 (362)
-+++..+++++... .++.+..||...+..+.+.
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~ 505 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 505 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe
Confidence 56666788876654 4788999998766665543
No 175
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=46.86 E-value=1.4e+02 Score=25.79 Aligned_cols=112 Identities=16% Similarity=0.089 Sum_probs=60.1
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCC--EEEEEEEc
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGH--SFSLWMMK 293 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~--~~~iW~l~ 293 (362)
+|.+...+.++ .+..++..++........... ......+ ..-+|+..+........ .+.+|.+.
T Consensus 187 dg~~l~s~s~~-----~~~~~~~~~~~~~~~~~~~~~--------~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 187 DGKVVAYITGS-----SLEVISTVTGSCIARKTDFDK--------NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp TSSEEEEECSS-----CEEEEETTTCCEEEEECCCCT--------TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred CCceEEeccce-----eEEEEEeccCcceeeeecCCC--------CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc
Confidence 56554444443 567777766655332222111 1112222 34567766666543333 55666665
Q ss_pred CCeeeE--EEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEE
Q 041235 294 GGFWTK--HLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIR 341 (362)
Q Consensus 294 ~~~W~~--~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~ 341 (362)
...... ...+........-+++.++|.++.... ++.+.+||.++++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS 304 (365)
T ss_dssp TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE
Confidence 533322 233332222334566677888877654 788999999988653
No 176
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=46.17 E-value=2.3e+02 Score=28.03 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=51.7
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE--EcCeEEEEEecCCCCEEEEEEEcC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI--YDGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
+|.|||..... ..|.++|+....-+.+-. ... . .-..|++ .+|.|+..... ....|.+-.|+.
T Consensus 482 ~~~LY~tD~~~----~~I~v~~ldG~~~~~l~~-~~l--------~-~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG 546 (791)
T 3m0c_C 482 HSNIYWTDSVL----GTVSVADTKGVKRKTLFR-ENG--------S-KPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG 546 (791)
T ss_dssp TTEEEEEETTT----TEEEEEETTSSSEEEEEE-CTT--------C-CEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred CCcEEEEecCC----CeEEEEeCCCCeEEEEEe-CCC--------C-CcceEEEecCCCCEEEecCC-CCCeEEEEecCC
Confidence 46999987653 489999998765544421 111 0 1223444 34677776532 113333333332
Q ss_pred CeeeEEEEecCCCcceeeEEE--e-eCCeEEEEEe-CCeEEEEECCCCeEEEE
Q 041235 295 GFWTKHLSFGPFMEAYQPLGF--W-RNGEFFLESS-DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 295 ~~W~~~~~i~~~~~~~~~~~~--~-~~~~i~~~~~-~~~l~~yd~~t~~~~~i 343 (362)
+-.++. +. ..+..|.++ . .++.||+... ..++..+|++.+..+.+
T Consensus 547 -~~~~~l-v~--~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 547 -VDIYSL-VT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp -CCEEEE-EC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred -CceEEE-Ee--CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 111111 11 122334333 3 2355565543 45666777765544433
No 177
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=45.68 E-value=1.6e+02 Score=26.13 Aligned_cols=201 Identities=11% Similarity=0.022 Sum_probs=98.0
Q ss_pred ccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEE
Q 041235 107 CDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVA 184 (362)
Q Consensus 107 ~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 184 (362)
.+|-|.+.+ +..+.++|+.+++...+..... . .. +.+++..+ .++... .... ..+.
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~----~------~~-ia~~~~g~--~l~~~d--~~~~-------~~I~ 197 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK----G------GK-PAVTKDKQ--RVYSIG--WEGT-------HTVY 197 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEETCC----B------CB-CEECTTSS--EEEEEB--SSTT-------CEEE
T ss_pred CCCCEEEEecCCCcEEEEECCCCEEEEeeccCC----C------Cc-eeEecCCC--cEEEEe--cCCC-------ceEE
Confidence 456666655 4678999999888776644321 1 22 56666543 222221 1111 2455
Q ss_pred EEEcCCCC-ceeccc-CcccceeecCCCCccEEE-CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCC
Q 041235 185 IYNFSTNS-WRDLEG-LFQMGHYYGSDSTDNVYL-NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDES 261 (362)
Q Consensus 185 vyss~~~~-W~~~~~-~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~ 261 (362)
+++..++. .+.... ... .... ...-.+.- +|.+|+.... ..|..||..+.....+....... ..
T Consensus 198 ~~d~~~~~~~~~~g~~~~~-~~~~--p~~iav~p~~g~lyv~d~~-----~~I~~~d~~~~~~~~~~~~~~~g-----~~ 264 (409)
T 3hrp_A 198 VYMKASGWAPTRIGQLGST-FSGK--IGAVALDETEEWLYFVDSN-----KNFGRFNVKTQEVTLIKQLELSG-----SL 264 (409)
T ss_dssp EEEGGGTTCEEEEEECCTT-SCSC--CCBCEECTTSSEEEEECTT-----CEEEEEETTTCCEEEEEECCCCS-----CC
T ss_pred EEEcCCCceeEEeeeccch-hcCC--cEEEEEeCCCCeEEEEECC-----CcEEEEECCCCCEEEEecccccC-----CC
Confidence 66654431 122211 010 0000 11112222 7899993322 38999999887765551111110 00
Q ss_pred CCc-eeEEEEE--cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCC----C--------cceeeEEEeeCCeEEEEEe
Q 041235 262 EMT-SWRIGIY--DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPF----M--------EAYQPLGFWRNGEFFLESS 326 (362)
Q Consensus 262 ~~~-~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~----~--------~~~~~~~~~~~~~i~~~~~ 326 (362)
... ...++.. +|.|++... ....+..|..+ ..-..+..-... + ....-+++..+|.+++...
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~--~~~~I~~~~~~-g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~ 341 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQ--NLSSVYKITPD-GECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG 341 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEET--TTTEEEEECTT-CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred CCCccccEEEeCCCCEEEEEeC--CCCEEEEEecC-CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence 111 1144444 477877654 34454444332 221111111100 0 1133455666788888764
Q ss_pred --CCeEEEEECCCCeEEEEEE
Q 041235 327 --DNRLVLYDSRYEEIRDLEI 345 (362)
Q Consensus 327 --~~~l~~yd~~t~~~~~i~~ 345 (362)
..++..+|+.++++..+.-
T Consensus 342 ~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 342 FKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TTTCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEeC
Confidence 5789999988888776643
No 178
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=45.66 E-value=1.2e+02 Score=25.44 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=9.4
Q ss_pred cccEEEee-cCcEEEEecc
Q 041235 108 DGIFCFFE-NENIYLWNVS 125 (362)
Q Consensus 108 ~GLl~~~~-~~~~~v~NP~ 125 (362)
+|.+.+.. +..++.+|+.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~ 125 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD 125 (330)
T ss_dssp TTEEEEECTTSEEEEECTT
T ss_pred CCEEEEEecCCEEEEEcCC
Confidence 44444443 3456666665
No 179
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=45.39 E-value=1.6e+02 Score=25.92 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=40.3
Q ss_pred CeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeE
Q 041235 273 GSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 273 g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
|.+.+... .+..+.||.+.... .+..+.........+.+..++..++.. .++.+.+||.++++.
T Consensus 308 g~~l~sgs--~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 308 GPFLLSGS--RDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp CCEEEEEE--TTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred CCEEEEEe--CCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Confidence 55555555 47899999986632 333333223334455666677766654 478899999988653
No 180
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=45.39 E-value=1.6e+02 Score=26.01 Aligned_cols=110 Identities=12% Similarity=0.145 Sum_probs=59.5
Q ss_pred EEECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEE
Q 041235 214 VYLNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMM 292 (362)
Q Consensus 214 v~~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l 292 (362)
+..+|.....+..+ ..|..||+.+.+- ..+..+... ... ..-+..+|.+.++.. .+..+.||.+
T Consensus 325 ~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~--------~~~-v~~~~~~~~~l~s~~--~dg~v~iwd~ 389 (445)
T 2ovr_B 325 MELKDNILVSGNAD----STVKIWDIKTGQCLQTLQGPNKH--------QSA-VTCLQFNKNFVITSS--DDGTVKLWDL 389 (445)
T ss_dssp EEEETTEEEEEETT----SCEEEEETTTCCEEEEECSTTSC--------SSC-EEEEEECSSEEEEEE--TTSEEEEEET
T ss_pred EEEeCCEEEEEeCC----CeEEEEECCCCcEEEEEccCCCC--------CCC-EEEEEECCCEEEEEe--CCCeEEEEEC
Confidence 44455544444332 2799999977654 444544322 111 222344677666555 4789999998
Q ss_pred cCCeeeEEEEec---CCCcceeeEEEeeCCeEEEEEe-CC----eEEEEECCCC
Q 041235 293 KGGFWTKHLSFG---PFMEAYQPLGFWRNGEFFLESS-DN----RLVLYDSRYE 338 (362)
Q Consensus 293 ~~~~W~~~~~i~---~~~~~~~~~~~~~~~~i~~~~~-~~----~l~~yd~~t~ 338 (362)
+..+........ ........+.+.+++.++.... ++ ++.+||++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 390 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 774333222111 1122334455556666665543 33 4999998754
No 181
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=45.09 E-value=1.4e+02 Score=25.23 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=38.8
Q ss_pred CCCEEEEEEEcC------CeeeEEEEecC-CCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEEEEE
Q 041235 283 SGHSFSLWMMKG------GFWTKHLSFGP-FMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 283 ~~~~~~iW~l~~------~~W~~~~~i~~-~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~~i~ 344 (362)
.+..+.||.+.. ..|.....+.. .......+.+..++.++....++.+.+||.+++.++.+.
T Consensus 219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEe
Confidence 578999998864 35766665542 222233344443444444456888999999988776543
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=45.07 E-value=2e+02 Score=27.04 Aligned_cols=202 Identities=10% Similarity=-0.027 Sum_probs=98.6
Q ss_pred cccEEEee--cCcEEEEeccccceec-ccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEE
Q 041235 108 DGIFCFFE--NENIYLWNVSMNEYRI-VTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVA 184 (362)
Q Consensus 108 ~GLl~~~~--~~~~~v~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 184 (362)
++++.+.. +..+.|+|+.|++... +|... . .+++.+++..+ |-++. . .. -.+.
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-----~------p~~v~~SpDGr-~lyv~-~----~d-------g~V~ 221 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-----A------VHISRLSASGR-YLFVI-G----RD-------GKVN 221 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-----C------EEEEEECTTSC-EEEEE-E----TT-------SEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-----C------ccceEECCCCC-EEEEE-c----CC-------CeEE
Confidence 34554444 5689999999987653 44221 1 45677777543 32222 1 11 3678
Q ss_pred EEEcCCCCceecccCcccceeecCCCCccEEE-----Cce-EEEEeecCCCCccEEEEEECCCcee-eEecCCCC-CCCC
Q 041235 185 IYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL-----NGY-CYWVASGHNSYNASILSFSMSDEVF-EEIKGPNF-PQIT 256 (362)
Q Consensus 185 vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~-----~G~-lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~-~~~~ 256 (362)
+|+....+-+.+.. .+... ......+- +|. +|..... ...+.++|..+.+- ..++.... .+..
T Consensus 222 viD~~~~t~~~v~~---i~~G~--~P~~ia~s~~~~pDGk~l~v~n~~----~~~v~ViD~~t~~~~~~i~~~~~~~~~~ 292 (567)
T 1qks_A 222 MIDLWMKEPTTVAE---IKIGS--EARSIETSKMEGWEDKYAIAGAYW----PPQYVIMDGETLEPKKIQSTRGMTYDEQ 292 (567)
T ss_dssp EEETTSSSCCEEEE---EECCS--EEEEEEECCSTTCTTTEEEEEEEE----TTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred EEECCCCCCcEeEE---EecCC--CCceeEEccccCCCCCEEEEEEcc----CCeEEEEECCCCcEEEEEeccccccccc
Confidence 88874222222222 10000 00111222 575 4444433 34788999877544 33454321 1000
Q ss_pred CCCCCCCceeEEEEE-cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe--CCeEEEE
Q 041235 257 TYDESEMTSWRIGIY-DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS--DNRLVLY 333 (362)
Q Consensus 257 ~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~--~~~l~~y 333 (362)
.+. .......+... ++..+++... ....+.+....+....++..|+. ......+++..+|+.+++.. ++++.++
T Consensus 293 ~~~-p~~rva~i~~s~~~~~~vv~~~-~~g~v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 293 EYH-PEPRVAAILASHYRPEFIVNVK-ETGKILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp CEE-SCCCEEEEEECSSSSEEEEEET-TTTEEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccc-CCCceEEEEEcCCCCEEEEEec-CCCeEEEEecCCCccceeeeeec-cccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 000 01011223322 2344444442 34444444443333444445542 12345567777888766543 7889999
Q ss_pred ECCCCeEE-EEEE
Q 041235 334 DSRYEEIR-DLEI 345 (362)
Q Consensus 334 d~~t~~~~-~i~~ 345 (362)
|.+++++. .+.+
T Consensus 370 D~~t~kl~~~i~v 382 (567)
T 1qks_A 370 DTKEGKLVAIEDT 382 (567)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCcEEEEEec
Confidence 99999875 3444
No 183
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=44.93 E-value=1.5e+02 Score=25.45 Aligned_cols=198 Identities=12% Similarity=0.021 Sum_probs=88.1
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceec
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDL 196 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 196 (362)
..++++|..|++.+.+..... . ...+.+.|..+. +++.... .... .. ...+.+++..++..+.+
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~~----~------~~~~~~sp~dg~-~l~~~~~-~~~~-~~---~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQENQ----W------LGHPIYRPYDDS-TVAFCHE-GPHD-LV---DARMWLINEDGTNMRKV 231 (388)
T ss_dssp EEEEEEETTTCCEEEEEEESS----C------EEEEEEETTEEE-EEEEEEC-SCTT-TS---SCSEEEEETTSCCCEES
T ss_pred ceEEEEECCCCceEEeecCCc----c------ccccEECCCCCC-EEEEEEe-cCCC-CC---cceEEEEeCCCCceEEe
Confidence 468999999988776653221 1 234455552122 2332221 1110 00 14677777776655554
Q ss_pred ccCcc-cceeecCCCCccEEECce-EEEEeecCCCCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEEcC
Q 041235 197 EGLFQ-MGHYYGSDSTDNVYLNGY-CYWVASGHNSYNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIYDG 273 (362)
Q Consensus 197 ~~~~~-~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g 273 (362)
..... .... .....-+|. +++...........|..+|+.+.+.+.+ ..|.... . ....... ...-+|
T Consensus 232 ~~~~~~~~~~-----~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~--~--~~~~~~~-~~spdg 301 (388)
T 3pe7_A 232 KTHAEGESCT-----HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSH--L--MSNYDGS-LMVGDG 301 (388)
T ss_dssp CCCCTTEEEE-----EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEE--E--EECTTSS-EEEEEE
T ss_pred eeCCCCcccc-----cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCcee--e--eecCCCC-eEccCC
Confidence 43110 0000 111222565 6666654311123599999998876554 4443100 0 0000001 123344
Q ss_pred e-EEEEEec------CCCCEEEEEEEcCCeeeEEEEecC-CC-------cceeeEEEeeCCeE-EEEEe---CCeEEEEE
Q 041235 274 S-LSLLYSE------ESGHSFSLWMMKGGFWTKHLSFGP-FM-------EAYQPLGFWRNGEF-FLESS---DNRLVLYD 334 (362)
Q Consensus 274 ~-L~l~~~~------~~~~~~~iW~l~~~~W~~~~~i~~-~~-------~~~~~~~~~~~~~i-~~~~~---~~~l~~yd 334 (362)
+ |++.... .....+.+|.++...-..+..-.. .. .......+..+|+. ++... ...++.+|
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 302 SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 4 4433221 234566666665533222221110 00 01233455567764 44432 35688888
Q ss_pred CCCCeE
Q 041235 335 SRYEEI 340 (362)
Q Consensus 335 ~~t~~~ 340 (362)
+.++.+
T Consensus 382 l~~~~~ 387 (388)
T 3pe7_A 382 LPESVW 387 (388)
T ss_dssp CCGGGG
T ss_pred CChhcc
Confidence 876653
No 184
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=44.66 E-value=1.3e+02 Score=24.88 Aligned_cols=101 Identities=10% Similarity=0.038 Sum_probs=53.3
Q ss_pred cEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCC--
Q 041235 232 ASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFM-- 307 (362)
Q Consensus 232 ~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~-- 307 (362)
..|..+|+.+.+. ..+..+... ... ..+ ..-+|+..++... ....+.+|.++...-......+...
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~--------~~~-~~~~~s~dg~~l~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAG--------PTP-MVPMVAPGGRIAYATVN-KSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCT--------TCC-CCEEECTTSSEEEEEET-TTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCC--------CCc-cceEEcCCCCEEEEEeC-CCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 3788999988665 345555411 000 112 2335654333332 4567888877653322222222100
Q ss_pred -cceeeEEEeeCCeEEEEE-------------eCCeEEEEECCCCeEEE
Q 041235 308 -EAYQPLGFWRNGEFFLES-------------SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 308 -~~~~~~~~~~~~~i~~~~-------------~~~~l~~yd~~t~~~~~ 342 (362)
.....+.+..+|+.++.. .+..+..||+++++...
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 012345566677654443 35889999999987643
No 185
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=44.65 E-value=1.3e+02 Score=24.65 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=40.1
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecC-CCcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGP-FMEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIR 341 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~-~~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~ 341 (362)
++.+.++.. .+..+.+|.... ....+.. .......+.+..++.++....++.+..||+++++..
T Consensus 154 ~~~~l~~~~--~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 154 SENKFLTAS--ADKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp TTTEEEEEE--TTSCEEEEETTE----EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCEEEEEE--CCCCEEEEecCc----eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh
Confidence 566666665 477899997322 2222322 223345556667777555566889999999987643
No 186
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=44.28 E-value=1.4e+02 Score=26.36 Aligned_cols=66 Identities=8% Similarity=0.044 Sum_probs=41.9
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecC--CCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGP--FMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~--~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
+|.+.+... .+..+.+|.+.... .+..+.. .......+.+..++..++.. .++.+.+||+++++..
T Consensus 181 ~~~~l~~~~--~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 181 EKSLLVALT--NLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp SCEEEEEEE--TTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEEe--CCCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence 466656555 47899999987632 2233322 22334455666677776655 4778999999987653
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=43.91 E-value=2.3e+02 Score=27.26 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=73.3
Q ss_pred ccEEEEEcCC------C--CceecccCcccceeecCCCCccEEE-CceEEEEeecCCCCccEEEEEECCCc---eeeEec
Q 041235 181 LPVAIYNFST------N--SWRDLEGLFQMGHYYGSDSTDNVYL-NGYCYWVASGHNSYNASILSFSMSDE---VFEEIK 248 (362)
Q Consensus 181 ~~~~vyss~~------~--~W~~~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~il~fD~~~~---~~~~i~ 248 (362)
..+.+++..+ + .++.+..... .....+.. ++.+|+.+... .....|..+|+.+. .|+.+-
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~s~dg~~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFE-------GEYDYVTNEGTVFTFKTNRH-SPNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSS-------SCEEEEEEETTEEEEEECTT-CTTCEEEEEETTSCCGGGCEEEE
T ss_pred cEEEEEECcccccccCCccceEEeeCCCC-------cEEEEEeccCCEEEEEECCC-CCCCEEEEEeCCCCCcccceecc
Confidence 4666777665 3 4666544211 01122333 45677776543 23457999998875 466553
Q ss_pred CCCCCCCCCCCCCCCceeEEEEE-cCeEEEEEecCCCCEEEEEEEc--CCeeeEEEEecCCCcceeeEEEeeCCe-EEEE
Q 041235 249 GPNFPQITTYDESEMTSWRIGIY-DGSLSLLYSEESGHSFSLWMMK--GGFWTKHLSFGPFMEAYQPLGFWRNGE-FFLE 324 (362)
Q Consensus 249 ~P~~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~iW~l~--~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~ 324 (362)
.+... .....+... ++.|.+.... .....||+++ ++. .+..+.........+....+++ +++.
T Consensus 331 ~~~~~---------~~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~--~~~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 331 PEHEK---------DVLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGA--LLKIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp CCCSS---------CEEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCC--EEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred CCCCC---------CeEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCC--EEEecCCCCceEEEEecCCCCCEEEEE
Confidence 22211 012233444 6677776664 4445555554 332 2333432222222333334554 5544
Q ss_pred Ee----CCeEEEEECCCCe--EEEEE
Q 041235 325 SS----DNRLVLYDSRYEE--IRDLE 344 (362)
Q Consensus 325 ~~----~~~l~~yd~~t~~--~~~i~ 344 (362)
.. ...++.||+++++ .+.+.
T Consensus 398 ~ss~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp EECSSCCCEEEEEETTSSSCCCEEEE
T ss_pred EeCCCCCCEEEEEECCCCccceEEee
Confidence 33 5789999999877 55443
No 188
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=43.80 E-value=1.4e+02 Score=24.84 Aligned_cols=56 Identities=9% Similarity=0.095 Sum_probs=35.0
Q ss_pred CCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeE
Q 041235 283 SGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 283 ~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
.+..+.+|.+.... .+..+........-+.+.+++.+++.. .++.+.+||+++.+.
T Consensus 193 ~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 193 WDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp TTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCc--eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 46789999886632 233333222333445566677776654 478889999988764
No 189
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=43.60 E-value=1.4e+02 Score=24.94 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=41.5
Q ss_pred cCe-EEEEEecCCCCEEEEEEEcC-----------------CeeeEEEEecCCCcceeeEEEeeCCeEEE-E-EeCCeEE
Q 041235 272 DGS-LSLLYSEESGHSFSLWMMKG-----------------GFWTKHLSFGPFMEAYQPLGFWRNGEFFL-E-SSDNRLV 331 (362)
Q Consensus 272 ~g~-L~l~~~~~~~~~~~iW~l~~-----------------~~W~~~~~i~~~~~~~~~~~~~~~~~i~~-~-~~~~~l~ 331 (362)
+|+ +.+... .+..+.||.++. ..+..+..+........-+.+..++..++ . ..++.+.
T Consensus 270 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 270 QNRELFLTAG--GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp TEEEEEEEEE--TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCcEEEEEe--CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence 455 444444 477999999975 14455666554444445566667777665 3 4488999
Q ss_pred EEECCCC
Q 041235 332 LYDSRYE 338 (362)
Q Consensus 332 ~yd~~t~ 338 (362)
+||+++.
T Consensus 348 iw~~~~~ 354 (357)
T 3i2n_A 348 VLIVTKL 354 (357)
T ss_dssp EEEECC-
T ss_pred EEECCCc
Confidence 9999864
No 190
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=43.16 E-value=2e+02 Score=26.46 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=41.7
Q ss_pred cCe-EEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCc---ceeeEEEeeC-CeEEEEE-eCCeEEEEECCCCeEE
Q 041235 272 DGS-LSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFME---AYQPLGFWRN-GEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 272 ~g~-L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~---~~~~~~~~~~-~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
+|. +.+... .+..+.+|.++. ...+..+..... ...-+.+..+ +..++.. .++.+..||+++++..
T Consensus 171 ~~~~~l~~~~--~d~~v~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 242 (615)
T 1pgu_A 171 SRPMRSMTVG--DDGSVVFYQGPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 242 (615)
T ss_dssp SSSCEEEEEE--TTTEEEEEETTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred CCCcEEEEEe--CCCcEEEEeCCC--cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe
Confidence 454 444444 478999998755 334445543333 3445566667 7766654 5788999999887653
No 191
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=43.10 E-value=1.5e+02 Score=24.92 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCCCCceeEEEEE--cCeEEEEEecCCCCEEEEEEEcC---CeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEE
Q 041235 258 YDESEMTSWRIGIY--DGSLSLLYSEESGHSFSLWMMKG---GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLV 331 (362)
Q Consensus 258 ~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~ 331 (362)
+.+.......+... ++.+.+.+. .+.++.+|.+.. ..-..+..+.........+.+..++..++... ++.+.
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s--~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSAS--RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEE--TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEec--CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Q ss_pred EEECCCCeEEE
Q 041235 332 LYDSRYEEIRD 342 (362)
Q Consensus 332 ~yd~~t~~~~~ 342 (362)
+||+++++...
T Consensus 91 ~wd~~~~~~~~ 101 (319)
T 3frx_A 91 LWDVATGETYQ 101 (319)
T ss_dssp EEETTTTEEEE
T ss_pred EEECCCCCeeE
No 192
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=42.98 E-value=1.5e+02 Score=24.87 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=58.3
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEc--
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMK-- 293 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~-- 293 (362)
+|.+||..... ..|..||..++.-..+..+.. ...++. -+|+|+++... .....|+.++
T Consensus 42 ~g~lyv~d~~~----~~I~~~d~~g~~~~~~~~~~~------------p~gia~~~dG~l~vad~~--~~~~~v~~~d~~ 103 (306)
T 2p4o_A 42 DGTIFVTNHEV----GEIVSITPDGNQQIHATVEGK------------VSGLAFTSNGDLVATGWN--ADSIPVVSLVKS 103 (306)
T ss_dssp TSCEEEEETTT----TEEEEECTTCCEEEEEECSSE------------EEEEEECTTSCEEEEEEC--TTSCEEEEEECT
T ss_pred CCCEEEEeCCC----CeEEEECCCCceEEEEeCCCC------------ceeEEEcCCCcEEEEecc--CCcceEEEEcCC
Confidence 78898886432 379999988764444444321 123333 36787766542 2234556654
Q ss_pred CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCCe
Q 041235 294 GGFWTKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEE 339 (362)
Q Consensus 294 ~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~ 339 (362)
+...+.+..+.. ......++.+.++.+++... ...++.+|+.+++
T Consensus 104 ~g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 104 DGTVETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp TSCEEEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCeEEEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 355555544421 11222233344556666653 6789999998753
No 193
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=42.72 E-value=1.7e+02 Score=25.42 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=52.7
Q ss_pred EEEEEECCCcee--eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC-CeeeEEEEec-----
Q 041235 233 SILSFSMSDEVF--EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFG----- 304 (362)
Q Consensus 233 ~il~fD~~~~~~--~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~----- 304 (362)
.|..+|+.+..- ..+..... .....+...+|++.+... .+..+.||.+.+ ..-..+..+.
T Consensus 314 ~i~vwd~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~l~s~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 381 (420)
T 3vl1_A 314 MLAQWDLRSPECPVGEFLINEG----------TPINNVYFAAGALFVSSG--FDTSIKLDIISDPESERPAIEFETPTFL 381 (420)
T ss_dssp EEEEEETTCTTSCSEEEEESTT----------SCEEEEEEETTEEEEEET--TTEEEEEEEECCTTCCSCEECTTSCEEE
T ss_pred eEEEEEcCCCcCchhhhhccCC----------CCceEEEeCCCCEEEEec--CCccEEEEeccCCCCCccceeccCccEE
Confidence 899999987532 33332111 123344555777655554 578999999987 2111111111
Q ss_pred -CCCcceeeEEEeeCCe----EEEEEeCCeEEEEECCC
Q 041235 305 -PFMEAYQPLGFWRNGE----FFLESSDNRLVLYDSRY 337 (362)
Q Consensus 305 -~~~~~~~~~~~~~~~~----i~~~~~~~~l~~yd~~t 337 (362)
........+++..++. ++....++.+..|+++.
T Consensus 382 ~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 382 VSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 1112233455555555 77777788899999875
No 194
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=42.12 E-value=1.7e+02 Score=25.19 Aligned_cols=187 Identities=6% Similarity=-0.011 Sum_probs=88.2
Q ss_pred ccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEE
Q 041235 107 CDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVA 184 (362)
Q Consensus 107 ~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 184 (362)
.+|-.++.. +..+.|||..+++....-.... .. ...+.+.+.... .++... .+ -.+.
T Consensus 137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~---~~------V~~~~~~~~~~~-~l~s~s----~D-------~~v~ 195 (344)
T 4gqb_B 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA---AQ------VTCVAASPHKDS-VFLSCS----ED-------NRIL 195 (344)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SC------EEEEEECSSCTT-EEEEEE----TT-------SCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC---Cc------eEEEEecCCCCC-ceeeec----cc-------cccc
Confidence 345444433 5679999999887654322211 11 445666554333 233221 11 3678
Q ss_pred EEEcCCCCcee-cccCcccceeecCCCCccEEE---CceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCC
Q 041235 185 IYNFSTNSWRD-LEGLFQMGHYYGSDSTDNVYL---NGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYD 259 (362)
Q Consensus 185 vyss~~~~W~~-~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~ 259 (362)
+++.+++.-.. +..... . ....++.+ ++.+...+.. ...|..+|+.+.+. ..+...
T Consensus 196 iwd~~~~~~~~~~~~~~~-~-----~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~~~~~~~h--------- 256 (344)
T 4gqb_B 196 LWDTRCPKPASQIGCSAP-G-----YLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSCVLSSAVH--------- 256 (344)
T ss_dssp EEETTSSSCEEECC-----C-----CCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--CCEEEECC---------
T ss_pred cccccccceeeeeeccee-e-----ccceeeeecCCCCcceEEecc----CCcEEEEECCCCcEEEEEcCC---------
Confidence 88877654322 111000 0 00111221 2333333332 22788889887543 222211
Q ss_pred CCCCceeEEEEE-cC-eEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCe-EEEE-EeCCeEEEEEC
Q 041235 260 ESEMTSWRIGIY-DG-SLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGE-FFLE-SSDNRLVLYDS 335 (362)
Q Consensus 260 ~~~~~~~~l~~~-~g-~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~-~~~~~l~~yd~ 335 (362)
......+.-. +| ++.+.+. .+.++.||.+...+ +..+.........+.+..++. ++.. ..|+.+..|++
T Consensus 257 --~~~v~~v~fsp~g~~~lasgs--~D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 257 --SQCVTGLVFSPHSVPFLASLS--EDCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp --SSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTCCE---EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred --CCCEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCc---EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 1122233322 45 3444444 47789999765432 223322223344555655665 5544 35899999999
Q ss_pred CCCeE
Q 041235 336 RYEEI 340 (362)
Q Consensus 336 ~t~~~ 340 (362)
.++..
T Consensus 330 ~~~~~ 334 (344)
T 4gqb_B 330 PTEPL 334 (344)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 88754
No 195
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=41.61 E-value=2.3e+02 Score=26.68 Aligned_cols=116 Identities=7% Similarity=-0.054 Sum_probs=62.1
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEEE-cCeEEEEEecCCCCEEEEEEEcC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGIY-DGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
||.+|+.+... ....|..+|+.+++++.+ +.......- ........+... +|++.+... . ....||.++.
T Consensus 252 dg~l~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~~~~p---~w~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~d~ 323 (662)
T 3azo_A 252 DGSLIVATDRT--GWWNLHRVDPATGAATQLCRREEEFAGP---LWTPGMRWFAPLANGLIAVVHG--K-GAAVLGILDP 323 (662)
T ss_dssp TSCEEEEECTT--SSCEEEEECTTTCCEEESSCCSSBSSCC---CCSTTCCSEEECTTSCEEEEEB--S-SSCEEEEEET
T ss_pred CCeEEEEECCC--CCeEEEEEECCCCceeecccccccccCc---cccccCceEeEeCCCEEEEEEE--c-CccEEEEEEC
Confidence 78888776543 234799999988777654 222111000 000001123333 577665554 3 6789998874
Q ss_pred --CeeeEEEEecCCCcceeeE-EEeeCCeEEEEE-eC---CeEEEEECCCCeEEEEE
Q 041235 295 --GFWTKHLSFGPFMEAYQPL-GFWRNGEFFLES-SD---NRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 295 --~~W~~~~~i~~~~~~~~~~-~~~~~~~i~~~~-~~---~~l~~yd~~t~~~~~i~ 344 (362)
.. ...+.........+ .. ..+.+++.. .. ..++.+|+++++.+.+.
T Consensus 324 ~~~~---~~~l~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 324 ESGE---LVDAAGPWTEWAATLTV-SGTRAVGVAASPRTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp TTTE---EEECCSSCCEEEEEEEE-ETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred CCCc---EEEecCCCCeEEEEEec-CCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence 43 23333222222333 22 234555543 32 46888999998887764
No 196
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=41.44 E-value=1.7e+02 Score=25.10 Aligned_cols=64 Identities=8% Similarity=0.087 Sum_probs=41.1
Q ss_pred cCeEEEEEecCCCCE-EEEEEEcCCeeeEEEEecC--CCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCe
Q 041235 272 DGSLSLLYSEESGHS-FSLWMMKGGFWTKHLSFGP--FMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEE 339 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~-~~iW~l~~~~W~~~~~i~~--~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~ 339 (362)
+|++.+.+. .+.+ +.||.+... ..+..+.. .......+.+.+++..++.. .++.+.+||++++.
T Consensus 206 ~g~~l~s~s--~d~~~v~iwd~~~~--~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 206 KSDMVATCS--QDGTIIRVFKTEDG--VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TSSEEEEEE--TTCSEEEEEETTTC--CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CCCEEEEEe--CCCCEEEEEECCCC--cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 566666655 3666 999998653 34444431 23334556666778877665 47889999997653
No 197
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=40.26 E-value=1.6e+02 Score=24.36 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=23.8
Q ss_pred eeeEEEeeCCeEEEEE-eCCeEEEEECCCC-eEEEEE
Q 041235 310 YQPLGFWRNGEFFLES-SDNRLVLYDSRYE-EIRDLE 344 (362)
Q Consensus 310 ~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~-~~~~i~ 344 (362)
..-+.+..++.+++.. .++.+.+||++++ .++.+.
T Consensus 309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 3445555677766554 4788999999985 566665
No 198
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=39.80 E-value=1.6e+02 Score=24.35 Aligned_cols=93 Identities=9% Similarity=0.073 Sum_probs=49.0
Q ss_pred EEEEEECCCceeeE-ecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCccee
Q 041235 233 SILSFSMSDEVFEE-IKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQ 311 (362)
Q Consensus 233 ~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~ 311 (362)
.|..||+.+..... +...... ...........+|.+.+... .+..+.+|.++... .+..+........
T Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~--~~~~~~~h~~~v~ 283 (312)
T 4ery_A 215 TLKLWDYSKGKCLKTYTGHKNE-------KYCIFANFSVTGGKWIVSGS--EDNLVYIWNLQTKE--IVQKLQGHTDVVI 283 (312)
T ss_dssp EEEEEETTTTEEEEEECSSCCS-------SSCCCEEEECSSSCEEEECC--TTSCEEEEETTTCC--EEEEECCCSSCEE
T ss_pred eEEEEECCCCcEEEEEEecCCc-------eEEEEEEEEeCCCcEEEEEC--CCCEEEEEECCCch--hhhhhhccCCcEE
Confidence 78999998876533 3222111 01111111223455544444 57789999987632 3344433233334
Q ss_pred eEEEeeCCeEEEEEe---CCeEEEEECC
Q 041235 312 PLGFWRNGEFFLESS---DNRLVLYDSR 336 (362)
Q Consensus 312 ~~~~~~~~~i~~~~~---~~~l~~yd~~ 336 (362)
.+.+.+++.++.... ++.+..|+.+
T Consensus 284 ~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 284 STACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEeecCcCCceEEEEccCCccEEEecCC
Confidence 455556677666542 6667777654
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=39.45 E-value=2.7e+02 Score=26.90 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=78.4
Q ss_pred ccEEEEEcCCC--C-ceecccCcccceeecCCCCccE-EECceEEEEeecCCCCccEEEEEECCC--ceeeEecCCCCCC
Q 041235 181 LPVAIYNFSTN--S-WRDLEGLFQMGHYYGSDSTDNV-YLNGYCYWVASGHNSYNASILSFSMSD--EVFEEIKGPNFPQ 254 (362)
Q Consensus 181 ~~~~vyss~~~--~-W~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~il~fD~~~--~~~~~i~~P~~~~ 254 (362)
..+.+.+..++ . |+.+...... ....+ ..++.+|+.+... .....|..+|+.+ +.|+.+- |...
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~-------~~~~~~~dg~~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~l~-~~~~- 363 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKA-------QWDFVDGVGDQLWFVSGDG-APLKKIVRVDLSGSTPRFDTVV-PESK- 363 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSS-------CEEEEEEETTEEEEEECTT-CTTCEEEEEECSSSSCEEEEEE-CCCS-
T ss_pred ceEEEEECCCCCCcccEEecCCCCc-------eEEEEeccCCEEEEEECCC-CCCCEEEEEeCCCCccccEEEe-cCCC-
Confidence 46677777666 6 7776542211 11122 3455677777653 2345799999988 5776653 3222
Q ss_pred CCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC-CeeeEEEEecCC-CcceeeEEEeeCCe-EEEEEe----C
Q 041235 255 ITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFGPF-MEAYQPLGFWRNGE-FFLESS----D 327 (362)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~-~~~~~~~~~~~~~~-i~~~~~----~ 327 (362)
. ....+...++.|.+.... .....||.++- +. ....+... ......+....+++ +++... .
T Consensus 364 -----~---~l~~~~~~~~~lv~~~~~--dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 431 (741)
T 1yr2_A 364 -----D---NLESVGIAGNRLFASYIH--DAKSQVLAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQP 431 (741)
T ss_dssp -----S---EEEEEEEEBTEEEEEEEE--TTEEEEEEEETTSC--EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEE
T ss_pred -----C---eEEEEEEECCEEEEEEEE--CCEEEEEEEeCCCC--ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 0 122334457887777664 56778888763 32 23334321 12222333334554 554433 4
Q ss_pred CeEEEEECCCCeEEEE
Q 041235 328 NRLVLYDSRYEEIRDL 343 (362)
Q Consensus 328 ~~l~~yd~~t~~~~~i 343 (362)
..++.||+.+++.+.+
T Consensus 432 ~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 432 ATVLALDPATAKTTPW 447 (741)
T ss_dssp EEEEEEETTTTEEEEC
T ss_pred CEEEEEECCCCcEEEE
Confidence 6799999999886554
No 200
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=39.33 E-value=2.9e+02 Score=27.28 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=81.1
Q ss_pred eeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceecccCcccceeecCCCCccEEE---CceEEEEee
Q 041235 149 NFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL---NGYCYWVAS 225 (362)
Q Consensus 149 ~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~ 225 (362)
..++++|...+. |+... ... ..+++++..+..-+.+... .+ ....++.+ +|.|||...
T Consensus 473 P~GLAvD~~~~~--LY~tD---~~~-------~~I~v~~ldG~~~~~l~~~-~l------~~P~gIaVDp~~g~LYwtD~ 533 (791)
T 3m0c_C 473 PDGLAVDWIHSN--IYWTD---SVL-------GTVSVADTKGVKRKTLFRE-NG------SKPRAIVVDPVHGFMYWTDW 533 (791)
T ss_dssp CCEEEEETTTTE--EEEEE---TTT-------TEEEEEETTSSSEEEEEEC-TT------CCEEEEEEETTTTEEEEEEC
T ss_pred cceeeeeecCCc--EEEEe---cCC-------CeEEEEeCCCCeEEEEEeC-CC------CCcceEEEecCCCCEEEecC
Confidence 567888876543 33321 112 4677888765543333220 00 11234444 589999875
Q ss_pred cCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE--EcCeEEEEEecCCCCEEEEEEEcC-CeeeEEEE
Q 041235 226 GHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI--YDGSLSLLYSEESGHSFSLWMMKG-GFWTKHLS 302 (362)
Q Consensus 226 ~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~ 302 (362)
.. ...|..+++....-+.+-. ..+ . .-..|+. .+|+|+++.. ....|..-.++. .....+
T Consensus 534 g~---~~~I~~~~~dG~~~~~lv~-~~l--------~-~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~-- 596 (791)
T 3m0c_C 534 GT---PAKIKKGGLNGVDIYSLVT-ENI--------Q-WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTIL-- 596 (791)
T ss_dssp SS---SCEEEEEETTSCCEEEEEC-SSC--------S-CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEE--
T ss_pred CC---CCeEEEEecCCCceEEEEe-CCC--------C-CceEEEEecCCCeEEEEeC--CCCcEEEEecCCCceEEEe--
Confidence 43 2479999988665544321 111 1 1123433 3678888864 344444444433 222211
Q ss_pred ecCCCcceeeEEEee-CCeEEEEEe-CCeEEEEECCCCeE
Q 041235 303 FGPFMEAYQPLGFWR-NGEFFLESS-DNRLVLYDSRYEEI 340 (362)
Q Consensus 303 i~~~~~~~~~~~~~~-~~~i~~~~~-~~~l~~yd~~t~~~ 340 (362)
........|+++.- ++.||+... ...+...|..+++-
T Consensus 597 -~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 597 -EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp -ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred -cCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcc
Confidence 11112456666654 455666654 67789999877643
No 201
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=38.65 E-value=1.7e+02 Score=24.46 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=41.2
Q ss_pred CeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEee-CCeEEEEE-eCCeEEEEECCCCeEEE
Q 041235 273 GSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWR-NGEFFLES-SDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 273 g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~i~~~~-~~~~l~~yd~~t~~~~~ 342 (362)
|.+.++.. .+..+.||.++.. ..+..+........-+.+.. ++.+++.. .++.+..||+++++...
T Consensus 85 ~~~l~~~~--~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 85 HPLLAVAG--SRGIIRIINPITM--QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp CEEEEEEE--TTCEEEEECTTTC--CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCEEEEec--CCCEEEEEEchhc--eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEE
Confidence 45655555 4779999988652 23333432233344455555 66666654 47889999999886543
No 202
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=37.86 E-value=1.8e+02 Score=24.30 Aligned_cols=67 Identities=3% Similarity=-0.140 Sum_probs=40.5
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeE-EEEE-eCCeEEEEECCCCeEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEF-FLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i-~~~~-~~~~l~~yd~~t~~~~ 341 (362)
++++++... ....+.+|.++..........+. ......+.+..+++. ++.. .+..+..||+++++..
T Consensus 10 ~~~~~v~~~--~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 10 GHEYMIVTN--YPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp TCEEEEEEE--TTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEeC--CCCeEEEEECCCCcEEEEEecCC-CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 455666555 46788888876644333333321 012344556667764 4444 3678999999998764
No 203
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=37.03 E-value=1.8e+02 Score=24.13 Aligned_cols=91 Identities=11% Similarity=0.109 Sum_probs=54.2
Q ss_pred EEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcce
Q 041235 233 SILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAY 310 (362)
Q Consensus 233 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~ 310 (362)
.|..+|+.+..- ..+..... ....+ ..-+|++.+... .+..+.||.++..+ .+..+.......
T Consensus 36 ~v~lWd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~s--~d~~i~vwd~~~~~--~~~~~~~h~~~v 100 (304)
T 2ynn_A 36 RVELWNYETQVEVRSIQVTET-----------PVRAGKFIARKNWIIVGS--DDFRIRVFNYNTGE--KVVDFEAHPDYI 100 (304)
T ss_dssp EEEEEETTTTEEEEEEECCSS-----------CEEEEEEEGGGTEEEEEE--TTSEEEEEETTTCC--EEEEEECCSSCE
T ss_pred cEEEEECCCCceeEEeeccCC-----------cEEEEEEeCCCCEEEEEC--CCCEEEEEECCCCc--EEEEEeCCCCcE
Confidence 788888887654 23332211 11122 333566666655 47899999987632 333343333334
Q ss_pred eeEEEeeCCeEEEEE-eCCeEEEEECCCC
Q 041235 311 QPLGFWRNGEFFLES-SDNRLVLYDSRYE 338 (362)
Q Consensus 311 ~~~~~~~~~~i~~~~-~~~~l~~yd~~t~ 338 (362)
..+.+.+++.+++.. .++.+..||++++
T Consensus 101 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 101 RSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (304)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence 556666777776654 4788999999876
No 204
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=36.68 E-value=2.8e+02 Score=26.30 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=53.7
Q ss_pred ccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEE-EEcCe-EEEEEecCCCCEEEEEEEc--CC-eeeEEEEecC
Q 041235 231 NASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIG-IYDGS-LSLLYSEESGHSFSLWMMK--GG-FWTKHLSFGP 305 (362)
Q Consensus 231 ~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~-L~l~~~~~~~~~~~iW~l~--~~-~W~~~~~i~~ 305 (362)
...|..+|+.+++...+...... ......+. .-+|+ |++...........|+..+ .. ....+..-..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPK--------EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD 305 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCT--------TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC
T ss_pred eeEEEEEECCCCceEeeccCCCC--------ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC
Confidence 45799999998876655433211 11112222 23676 5444443333344444444 33 5544433221
Q ss_pred CCc--ceeeEEEee--CCeEEEEEe---CCeEEEEECCCCeEEEE
Q 041235 306 FME--AYQPLGFWR--NGEFFLESS---DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 306 ~~~--~~~~~~~~~--~~~i~~~~~---~~~l~~yd~~t~~~~~i 343 (362)
... ....+.+.. +|++++... ..+++.+|.+++.++.+
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l 350 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV 350 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC
T ss_pred CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec
Confidence 111 123456666 788666543 35688888777766655
No 205
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=36.49 E-value=2.5e+02 Score=25.65 Aligned_cols=95 Identities=13% Similarity=0.254 Sum_probs=55.3
Q ss_pred EEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEE-EEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCccee
Q 041235 233 SILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIG-IYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQ 311 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~ 311 (362)
.|..+|...+....+..... ....+. .-+|++.+... .+..+.||..+. ..+..+........
T Consensus 449 ~v~~w~~~~~~~~~~~~~~~-----------~v~~~~~spd~~~las~~--~d~~i~iw~~~~---~~~~~~~~h~~~v~ 512 (577)
T 2ymu_A 449 TVKLWNRNGQLLQTLTGHSS-----------SVRGVAFSPDGQTIASAS--DDKTVKLWNRNG---QLLQTLTGHSSSVR 512 (577)
T ss_dssp EEEEEETTSCEEEEEECCSS-----------CEEEEEECTTSCEEEEEE--TTSEEEEEETTS---CEEEEEECCSSCEE
T ss_pred EEEEEECCCCEEEEEcCCCC-----------CEEEEEEcCCCCEEEEEe--CCCEEEEEcCCC---CEEEEEeCCCCCEE
Confidence 68888877665555432211 122232 23677666555 478999998543 22333332223344
Q ss_pred eEEEeeCCeEEEEE-eCCeEEEEECCCCeEEEE
Q 041235 312 PLGFWRNGEFFLES-SDNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 312 ~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~~i 343 (362)
-+++.+++.+++.. .++.+.+||...+.+..+
T Consensus 513 ~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~ 545 (577)
T 2ymu_A 513 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 545 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTTSCEEEEE
T ss_pred EEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE
Confidence 56666778776654 478899999876655554
No 206
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=36.06 E-value=2.3e+02 Score=25.07 Aligned_cols=190 Identities=9% Similarity=0.005 Sum_probs=0.0
Q ss_pred ccEEEeecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEc
Q 041235 109 GIFCFFENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNF 188 (362)
Q Consensus 109 GLl~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 188 (362)
..|++.....+...+..+++...+-+.... ..++.+|+..+...+.-+.. -.+..++.
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~----------~~~l~~d~~~~~lywsD~~~------------~~I~~~~~ 141 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRN----------VVALDTEVASNRIYWSDLSQ------------RMICSTQL 141 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEECSCSC----------EEEEEEETTTTEEEEEETTT------------TEEEEEEC
T ss_pred ceeEEeccceeEEEccCCcceeEeccccCc----------ceEEeeeeccCceEEEecCC------------CeEEEEEc
Q ss_pred CC----CCceeccc-CcccceeecCCCCccEEE-CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCC
Q 041235 189 ST----NSWRDLEG-LFQMGHYYGSDSTDNVYL-NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESE 262 (362)
Q Consensus 189 ~~----~~W~~~~~-~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~ 262 (362)
.+ .....+.. ....+... +|-. +|.|||...... .|..+|+....-..+-.....
T Consensus 142 ~g~~~~~~~~~~~~~~~~~p~gl------avD~~~~~lY~~d~~~~----~I~~~~~~g~~~~~l~~~~~~--------- 202 (400)
T 3p5b_L 142 DRAHGVSSYDTVISRDIQAPDGL------AVDWIHSNIYWTDSVLG----TVSVADTKGVKRKTLFRENGS--------- 202 (400)
T ss_dssp ------CCCEEEECSSCSCEEEE------EEETTTTEEEEEETTTT----EEEEECTTTCSEEEEEECSSC---------
T ss_pred ccCCCCCcceEEEeCCCCCcccE------EEEecCCceEEEECCCC----eEEEEeCCCCceEEEEeCCCC---------
Q ss_pred CceeEEEEE--cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEe-eCCeEEEEEe-CCeEEEEECCCC
Q 041235 263 MTSWRIGIY--DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFW-RNGEFFLESS-DNRLVLYDSRYE 338 (362)
Q Consensus 263 ~~~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~i~~~~~-~~~l~~yd~~t~ 338 (362)
.-..++.. +|.|+.... ...-.|++.+-..=.....+...-.....+++. .++.||+... ..++..+|++..
T Consensus 203 -~P~~iavdp~~g~ly~td~---~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 203 -KPRAIVVDPVHGFMYWTDW---GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp -CEEEEEEETTTTEEEEEEC---SSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred -CcceEEEecccCeEEEEeC---CCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Q ss_pred eEEEE
Q 041235 339 EIRDL 343 (362)
Q Consensus 339 ~~~~i 343 (362)
..+.+
T Consensus 279 ~~~~~ 283 (400)
T 3p5b_L 279 NRKTI 283 (400)
T ss_dssp CCEEE
T ss_pred ccEEE
No 207
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=35.65 E-value=1.3e+02 Score=26.12 Aligned_cols=66 Identities=8% Similarity=0.122 Sum_probs=41.8
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeC-CeEEEEE-eCCeEEEEECCCCe
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRN-GEFFLES-SDNRLVLYDSRYEE 339 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~-~~i~~~~-~~~~l~~yd~~t~~ 339 (362)
+|++.+... .+..+.||.++. .....+..+.........+.+..+ +.+++.. .++.+..||+++++
T Consensus 78 ~~~~l~~~~--~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 78 NNKIIAGAL--DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT 147 (416)
T ss_dssp SSSCEEEEE--SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred CCCeEEEEc--cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence 566555554 367899999876 334455555433333444555555 5665554 47889999998875
No 208
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=35.54 E-value=2e+02 Score=24.26 Aligned_cols=202 Identities=12% Similarity=0.139 Sum_probs=94.6
Q ss_pred ccccEEEee--cCcEEEEecccc--ceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCcc
Q 041235 107 CDGIFCFFE--NENIYLWNVSMN--EYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLP 182 (362)
Q Consensus 107 ~~GLl~~~~--~~~~~v~NP~T~--~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 182 (362)
.+|-+.+.+ ...+.++|+-.+ ....+....... ..........++.+|+..+...|..- + .. ..
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g-~~~~~~~~P~~ia~~~~~g~lyv~d~---~-~~-------~~ 167 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG-SDQNHFCQPTDVAVEPSTGAVFVSDG---Y-CN-------SR 167 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC-CSTTCCSSEEEEEECTTTCCEEEEEC---S-SC-------CE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC-CCccccCCCcEEEEeCCCCeEEEEeC---C-CC-------Ce
Confidence 455555554 457888888655 233333211100 00011123678888885444433321 1 11 46
Q ss_pred EEEEEcCCCCceecccCcc----cceeecCCCCccEEE--C-ceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCC
Q 041235 183 VAIYNFSTNSWRDLEGLFQ----MGHYYGSDSTDNVYL--N-GYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQ 254 (362)
Q Consensus 183 ~~vyss~~~~W~~~~~~~~----~~~~~~~~~~~~v~~--~-G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~ 254 (362)
+.+|+.....-........ .+... ....++.+ + |.+|+.... ...|..||..++++ ..+..+..-
T Consensus 168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~--~~p~gia~d~~~g~l~v~d~~----~~~I~~~~~~~G~~~~~~~~~~~~- 240 (329)
T 3fvz_A 168 IVQFSPSGKFVTQWGEESSGSSPRPGQF--SVPHSLALVPHLDQLCVADRE----NGRIQCFKTDTKEFVREIKHASFG- 240 (329)
T ss_dssp EEEECTTSCEEEEECEECCSSSCCTTEE--SCEEEEEEETTTTEEEEEETT----TTEEEEEETTTCCEEEEECCTTTT-
T ss_pred EEEEcCCCCEEEEeccCCCCCCCCCccc--CCCcEEEEECCCCEEEEEECC----CCEEEEEECCCCcEEEEEeccccC-
Confidence 6777744332222211000 00011 11234444 4 888876654 34899999986655 445544321
Q ss_pred CCCCCCCCCceeEEEEEcCeEEEEEec-----CCCCEEEEEEEcCCeeeEEEEecCC-C--cceeeEEEeeCCeEEEEEe
Q 041235 255 ITTYDESEMTSWRIGIYDGSLSLLYSE-----ESGHSFSLWMMKGGFWTKHLSFGPF-M--EAYQPLGFWRNGEFFLESS 326 (362)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~g~L~l~~~~-----~~~~~~~iW~l~~~~W~~~~~i~~~-~--~~~~~~~~~~~~~i~~~~~ 326 (362)
. ....+....|.+...... .....+.+|.+..... +..+... . ....-+++..+|.+|+...
T Consensus 241 ------~--~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 241 ------R--NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGTVYIGDA 310 (329)
T ss_dssp ------T--CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred ------C--CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCCEEEEEC
Confidence 0 111222223333332211 1345777777666432 2333321 1 2234455666777776654
Q ss_pred -CCeEEEEECCC
Q 041235 327 -DNRLVLYDSRY 337 (362)
Q Consensus 327 -~~~l~~yd~~t 337 (362)
++++..|+++.
T Consensus 311 ~~~~I~~~~~~~ 322 (329)
T 3fvz_A 311 HTNTVWKFTLTE 322 (329)
T ss_dssp SSCCEEEEEEEE
T ss_pred CCCEEEEEeCCc
Confidence 56677777654
No 209
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=35.47 E-value=2.1e+02 Score=24.46 Aligned_cols=155 Identities=13% Similarity=0.049 Sum_probs=82.1
Q ss_pred eeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCceecccCcccceeecCCCCccEEE---CceEEEEee
Q 041235 149 NFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL---NGYCYWVAS 225 (362)
Q Consensus 149 ~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~ 225 (362)
...+.+.+....+-+.+- .+ -.+.+|+..++.....-...... ..-.++.+ +|.....+.
T Consensus 76 v~~~~~~~~~~~~l~s~~-----~d-------g~i~iwd~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGS-----KG-------GDIILWDYDVQNKTSFIQGMGPG-----DAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp EEEEEECSSCTTEEEEEE-----BT-------SCEEEEETTSTTCEEEECCCSTT-----CBEEEEEEETTEEEEEEEEE
T ss_pred EEEEEECCCCCCEEEEEc-----CC-------CeEEEEeCCCcccceeeecCCcC-----CceeEEEeCCCCCCEEEEEe
Confidence 556777775434433322 11 46788988877654432210000 00112222 333333333
Q ss_pred cCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEec
Q 041235 226 GHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFG 304 (362)
Q Consensus 226 ~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~ 304 (362)
. ...|..+|+.++....+...... ......+ ..-+|+..+... .+..+.+|.+... .+..+.
T Consensus 139 ~----d~~i~iwd~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~---~~~~~~ 201 (383)
T 3ei3_B 139 I----RGATTLRDFSGSVIQVFAKTDSW--------DYWYCCVDVSVSRQMLATGD--STGRLLLLGLDGH---EIFKEK 201 (383)
T ss_dssp T----TTEEEEEETTSCEEEEEECCCCS--------SCCEEEEEEETTTTEEEEEE--TTSEEEEEETTSC---EEEEEE
T ss_pred C----CCEEEEEECCCCceEEEeccCCC--------CCCeEEEEECCCCCEEEEEC--CCCCEEEEECCCC---EEEEec
Confidence 2 23899999998777766544332 1112233 233566655555 4789999998542 233333
Q ss_pred CCCcceeeEEEeeCCe-EEEEE-eCCeEEEEECCC
Q 041235 305 PFMEAYQPLGFWRNGE-FFLES-SDNRLVLYDSRY 337 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~-i~~~~-~~~~l~~yd~~t 337 (362)
........+.+..++. +++.. .++.+.+||+++
T Consensus 202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence 2233344555666666 55544 478899999987
No 210
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=34.66 E-value=2e+02 Score=24.03 Aligned_cols=139 Identities=10% Similarity=0.049 Sum_probs=76.7
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYD 259 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~ 259 (362)
..+.+++.+++.=...-...+.. + ...-...++.+|-+++.. ..+.+||..+.+- ..++.|..
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~--F---geGit~~g~~ly~ltw~~----~~v~v~D~~t~~~~~ti~~~~e------- 128 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRY--F---GEGISDWKDKIVGLTWKN----GLGFVWNIRNLRQVRSFNYDGE------- 128 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTC--C---EEEEEEETTEEEEEESSS----SEEEEEETTTCCEEEEEECSSC-------
T ss_pred ceEEEEECCCCcEEEEEecCCcc--c---eeEEEEeCCEEEEEEeeC----CEEEEEECccCcEEEEEECCCC-------
Confidence 46778888876432211111111 1 012345678999998764 3899999987554 56776542
Q ss_pred CCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCC---ccee--eEEEeeCCeEEEEE-eCCeEEEE
Q 041235 260 ESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFM---EAYQ--PLGFWRNGEFFLES-SDNRLVLY 333 (362)
Q Consensus 260 ~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~---~~~~--~~~~~~~~~i~~~~-~~~~l~~y 333 (362)
+ ..|+.-++.|++... .. .||.++...=..+.+|.... .+.. -+.. .+|.++.-. ....+..-
T Consensus 129 G-----~glt~dg~~L~~SdG---s~--~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~-~~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 129 G-----WGLTHNDQYLIMSDG---TP--VLRFLDPESLTPVRTITVTAHGEELPELNELEW-VDGEIFANVWQTNKIVRI 197 (262)
T ss_dssp C-----CCEEECSSCEEECCS---SS--EEEEECTTTCSEEEEEECEETTEECCCEEEEEE-ETTEEEEEETTSSEEEEE
T ss_pred c-----eEEecCCCEEEEECC---CC--eEEEEcCCCCeEEEEEEeccCCccccccceeEE-ECCEEEEEEccCCeEEEE
Confidence 1 133433455666532 33 36777653334445554211 1111 1222 367776544 37889999
Q ss_pred ECCCCeE-EEEEEe
Q 041235 334 DSRYEEI-RDLEIT 346 (362)
Q Consensus 334 d~~t~~~-~~i~~~ 346 (362)
|++|+++ +.|...
T Consensus 198 Dp~tG~V~~~Id~~ 211 (262)
T 3nol_A 198 DPETGKVTGIIDLN 211 (262)
T ss_dssp CTTTCBEEEEEECT
T ss_pred ECCCCcEEEEEECC
Confidence 9999987 456653
No 211
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.38 E-value=38 Score=22.16 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.5
Q ss_pred EEEeCCeEEEEECCCCeE
Q 041235 323 LESSDNRLVLYDSRYEEI 340 (362)
Q Consensus 323 ~~~~~~~l~~yd~~t~~~ 340 (362)
+...++++++||..|++=
T Consensus 25 v~T~dGR~fyyN~~Tk~S 42 (73)
T 2dk7_A 25 VWTGDERVFFYNPTTRLS 42 (73)
T ss_dssp EEESSSCEEEEETTTTEE
T ss_pred EECCCCCEEEecCcccce
Confidence 334689999999999964
No 212
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=34.36 E-value=30 Score=25.54 Aligned_cols=43 Identities=5% Similarity=-0.167 Sum_probs=25.7
Q ss_pred CcEEEEeccccceecccCCCCCCCCCCccceeeeEEee---cCCCCCeEEEEEE
Q 041235 117 ENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGL---DPTTNDFKLVLIL 167 (362)
Q Consensus 117 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~---d~~~~~ykvv~~~ 167 (362)
-.++++||.++.|...-. .. .. ...+.+.. |...+.|+|+...
T Consensus 20 A~Vm~~D~~~~~W~p~~~--g~-ls-----~v~v~~~~~~~d~~~~~yrI~~~~ 65 (126)
T 2jp2_A 20 AVVMTRDDSSGGWFPQEG--GG-IS-----RVGVCKVMHPEGNGRSGFLIHGER 65 (126)
T ss_dssp EEEEEECTTSSSSEECSC--CS-CE-----EEEEECCBCTTCSSCBCEEEEEEE
T ss_pred EEEeeEcCCCCCEeeCCC--CC-cc-----cEEEEEecCCCCCCCCEEEEEEEE
Confidence 368999999998864332 11 00 00222333 5677899999874
No 213
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=33.83 E-value=2.4e+02 Score=24.70 Aligned_cols=192 Identities=11% Similarity=0.084 Sum_probs=94.2
Q ss_pred cccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccE
Q 041235 106 PCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPV 183 (362)
Q Consensus 106 s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 183 (362)
..+|.|...+ ...++.+++.++....+-..... . ..++++|+..+.. +... ... ..+
T Consensus 125 ~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~---~------p~glavd~~~g~l--Y~~d---~~~-------~~I 183 (386)
T 3v65_B 125 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE---S------PGGLAVDWVHDKL--YWTD---SGT-------SRI 183 (386)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS---C------CCCEEEETTTTEE--EEEE---TTT-------TEE
T ss_pred cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC---C------ccEEEEEeCCCeE--EEEc---CCC-------CeE
Confidence 3456666655 45677777776654443222111 1 3567788755532 2221 111 356
Q ss_pred EEEEcCCCCceecccCcccceeecCCCCccEEE---CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCC
Q 041235 184 AIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL---NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDE 260 (362)
Q Consensus 184 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~ 260 (362)
++++.++..-+.+.. ..+ ....++.+ +|.+||..... ...|..+|+....-+.+-. ...
T Consensus 184 ~~~~~dg~~~~~l~~-~~l------~~P~giavdp~~g~ly~td~~~---~~~I~r~~~dG~~~~~~~~-~~~------- 245 (386)
T 3v65_B 184 EVANLDGAHRKVLLW-QSL------EKPRAIALHPMEGTIYWTDWGN---TPRIEASSMDGSGRRIIAD-THL------- 245 (386)
T ss_dssp EECBTTSCSCEEEEC-SSC------SCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEEC-SSC-------
T ss_pred EEEeCCCCceEEeec-CCC------CCCcEEEEEcCCCeEEEeccCC---CCEEEEEeCCCCCcEEEEE-CCC-------
Confidence 666655432222111 011 11123323 68999987543 3589999988654443321 111
Q ss_pred CCCceeEEEE--EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEe-eCCeEEEEEe-CCeEEEEECC
Q 041235 261 SEMTSWRIGI--YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFW-RNGEFFLESS-DNRLVLYDSR 336 (362)
Q Consensus 261 ~~~~~~~l~~--~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~i~~~~~-~~~l~~yd~~ 336 (362)
. .-..|+. .+|+|+++.. ....+....++...=..+ +. .....|.++. .++.+|+... ..++..+|..
T Consensus 246 -~-~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~--~~--~~~~~P~giav~~~~ly~td~~~~~V~~~~~~ 317 (386)
T 3v65_B 246 -F-WPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAV--IS--QGLPHPFAITVFEDSLYWTDWHTKSINSANKF 317 (386)
T ss_dssp -S-CEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEE--EC--SSCSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred -C-CeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEE--EE--CCCCCceEEEEECCEEEEeeCCCCeEEEEECC
Confidence 1 1123443 3677888765 344444444333111111 11 1234555544 3566777654 6789999965
Q ss_pred CCe-EEEEE
Q 041235 337 YEE-IRDLE 344 (362)
Q Consensus 337 t~~-~~~i~ 344 (362)
+++ .+.|.
T Consensus 318 ~G~~~~~i~ 326 (386)
T 3v65_B 318 TGKNQEIIR 326 (386)
T ss_dssp TCCSCEEEE
T ss_pred CCcceEEEc
Confidence 543 34443
No 214
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=33.72 E-value=2e+02 Score=23.71 Aligned_cols=64 Identities=5% Similarity=0.128 Sum_probs=40.8
Q ss_pred CeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCC---eEEEEE-eCCeEEEEECCCC
Q 041235 273 GSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNG---EFFLES-SDNRLVLYDSRYE 338 (362)
Q Consensus 273 g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~---~i~~~~-~~~~l~~yd~~t~ 338 (362)
+++.+.+. .+..+.||.++. ..|.....+........-+.+.+++ .++... .++.+.+||+++.
T Consensus 170 ~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 170 SRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 34444444 477899999987 5677776665433334455555553 555544 4788999998764
No 215
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=33.59 E-value=2e+02 Score=23.74 Aligned_cols=111 Identities=9% Similarity=0.078 Sum_probs=56.9
Q ss_pred ECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC-
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG- 294 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~- 294 (362)
-+|.++. +... .|..||...+.-..+..|... . ....-..-+|.+.++... ..-.|+.++.
T Consensus 46 pdG~ilv-s~~~-----~V~~~d~~G~~~W~~~~~~~~--------~-~~~~~~~~dG~~lv~~~~---~~~~v~~vd~~ 107 (276)
T 3no2_A 46 KAGEILF-SYSK-----GAKMITRDGRELWNIAAPAGC--------E-MQTARILPDGNALVAWCG---HPSTILEVNMK 107 (276)
T ss_dssp TTSCEEE-ECBS-----EEEEECTTSCEEEEEECCTTC--------E-EEEEEECTTSCEEEEEES---TTEEEEEECTT
T ss_pred CCCCEEE-eCCC-----CEEEECCCCCEEEEEcCCCCc--------c-ccccEECCCCCEEEEecC---CCCEEEEEeCC
Confidence 3777766 4443 799999954433445555322 0 111123346776665442 1235566554
Q ss_pred CeeeEEEEecCC--C--cceeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEEEEE
Q 041235 295 GFWTKHLSFGPF--M--EAYQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 295 ~~W~~~~~i~~~--~--~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~~i~ 344 (362)
.+......+... . .....+....+|.+++... +.++..||++.+.+-.+.
T Consensus 108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~ 162 (276)
T 3no2_A 108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVK 162 (276)
T ss_dssp SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEE
T ss_pred CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEE
Confidence 322222222211 0 1122344556788777654 788999999944433443
No 216
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=33.50 E-value=4.2e+02 Score=27.30 Aligned_cols=191 Identities=10% Similarity=0.093 Sum_probs=96.5
Q ss_pred ccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEE
Q 041235 107 CDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVA 184 (362)
Q Consensus 107 ~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 184 (362)
.+|-.+... +..+.|||..|++...--... ... ...+.+.+.. .+ ++... .+ -.+.
T Consensus 625 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h---~~~------v~~~~~s~~~-~~-l~s~~----~d-------~~v~ 682 (1249)
T 3sfz_A 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAH---EDE------VLCCAFSSDD-SY-IATCS----AD-------KKVK 682 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCC---SSC------EEEEEECTTS-SE-EEEEE----TT-------SEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEEEEeccC---CCC------EEEEEEecCC-CE-EEEEe----CC-------CeEE
Confidence 344433332 568999999998754322211 111 5667776643 33 22221 12 4678
Q ss_pred EEEcCCCCceecccCcccceeecCCCCccEEE----CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCC
Q 041235 185 IYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL----NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDE 260 (362)
Q Consensus 185 vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~----~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~ 260 (362)
|++..++.-...-.... ....++.+ ++.+...+.. ...|..+|+.+......-....
T Consensus 683 vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~sg~~----d~~v~vwd~~~~~~~~~~~~h~-------- 743 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHS-------EQVNCCHFTNKSNHLLLATGSN----DFFLKLWDLNQKECRNTMFGHT-------- 743 (1249)
T ss_dssp EEETTTCCEEEEEECCS-------SCEEEEEECSSSSCCEEEEEET----TSCEEEEETTSSSEEEEECCCS--------
T ss_pred EEECCCCceEEEEcCCC-------CcEEEEEEecCCCceEEEEEeC----CCeEEEEECCCcchhheecCCC--------
Confidence 88887764322111000 00111112 2222222222 2378899988876533211111
Q ss_pred CCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCC-----------CcceeeEEEeeCCeEEEEEeCC
Q 041235 261 SEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPF-----------MEAYQPLGFWRNGEFFLESSDN 328 (362)
Q Consensus 261 ~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~-----------~~~~~~~~~~~~~~i~~~~~~~ 328 (362)
.....+ ..-+|.+.+.+. .+..+.+|.+....-......... ......+.+..+|..++...++
T Consensus 744 --~~v~~~~~sp~~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~ 819 (1249)
T 3sfz_A 744 --NSVNHCRFSPDDELLASCS--ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819 (1249)
T ss_dssp --SCEEEEEECSSTTEEEEEE--SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred --CCEEEEEEecCCCEEEEEE--CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence 112222 223566555555 478999999876322222221100 0112234445678888877889
Q ss_pred eEEEEECCCCeEEE
Q 041235 329 RLVLYDSRYEEIRD 342 (362)
Q Consensus 329 ~l~~yd~~t~~~~~ 342 (362)
.+..||..++....
T Consensus 820 ~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLA 833 (1249)
T ss_dssp EEEEEETTTCCEEE
T ss_pred cEEEEEecCCCcee
Confidence 99999999887644
No 217
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=33.42 E-value=3.1e+02 Score=25.73 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=23.3
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCCc--eee
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSDE--VFE 245 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~--~~~ 245 (362)
..++..+|.+|..+.++ .+.++|..++ .|+
T Consensus 109 ~~~~~~~~~v~v~~~dg-----~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 109 RGLAYGAGQIVKKQANG-----HLLALDAKTGKINWE 140 (571)
T ss_dssp CCCEEETTEEEEECTTS-----EEEEEETTTCCEEEE
T ss_pred cccEEECCEEEEEeCCC-----EEEEEECCCCCEEEE
Confidence 45677899999987766 8999998765 554
No 218
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=33.12 E-value=57 Score=28.69 Aligned_cols=100 Identities=11% Similarity=-0.000 Sum_probs=44.6
Q ss_pred ECceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
.+|.+|.-..++ .+.++|..+++-. .+..+... ...-.++.+++... ...+..|..+.
T Consensus 91 ~~~~v~~g~~dg-----~v~a~D~~tG~~~w~~~~~~~~-------------~~~p~~~~v~~~~~---dg~v~a~d~~t 149 (369)
T 2hz6_A 91 SDGILYMGKKQD-----IWYVIDLLTGEKQQTLSSAFAD-------------SLSPSTSLLYLGRT---EYTITMYDTKT 149 (369)
T ss_dssp ----CCCCEEEE-----EEEEECCC-----------------------------------EEEEEE---EEEEECCCSSS
T ss_pred cCCEEEEEeCCC-----EEEEEECCCCcEEEEecCCCcc-------------cccccCCEEEEEec---CCEEEEEECCC
Confidence 677887655554 7999998865432 12222111 00113344444332 34455555544
Q ss_pred --CeeeEEEEecCCCcceeeEEEee----CCeEEEEEeCCeEEEEECCCCeEEE
Q 041235 295 --GFWTKHLSFGPFMEAYQPLGFWR----NGEFFLESSDNRLVLYDSRYEEIRD 342 (362)
Q Consensus 295 --~~W~~~~~i~~~~~~~~~~~~~~----~~~i~~~~~~~~l~~yd~~t~~~~~ 342 (362)
..|.....-. ....+.. ++.+++...++.++++|.++++..+
T Consensus 150 G~~~W~~~~~~~------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 150 RELRWNATYFDY------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp SSCCCEEEEEEE------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred CCEEEeEecccc------cCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 4577543210 1111111 2556666668899999999987655
No 219
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=32.88 E-value=2e+02 Score=23.33 Aligned_cols=111 Identities=13% Similarity=0.016 Sum_probs=57.8
Q ss_pred CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEE--cCeEEEEEecCCCCEEEEEEEcC
Q 041235 217 NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIY--DGSLSLLYSEESGHSFSLWMMKG 294 (362)
Q Consensus 217 ~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~ 294 (362)
+|.+||..... ..|..+|+....-+.+ .+... . .-..++.. +|.|++.........+.+..++.
T Consensus 90 ~~~lyv~d~~~----~~I~~~~~~g~~~~~~-~~~~~--------~-~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 90 GRTIFWTDSQL----DRIEVAKMDGTQRRVL-FDTGL--------V-NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp TTEEEEEETTT----TEEEEEETTSCSCEEE-ECSSC--------S-SEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCeEEEEECCC----CEEEEEEcCCCCEEEE-EECCC--------C-CccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 57999987543 3799999876543333 12111 1 11234333 57787776431234554444433
Q ss_pred CeeeEEEEecCCCcceeeEEEeeC-CeEEEEEe-CCeEEEEECCCCeEEEE
Q 041235 295 GFWTKHLSFGPFMEAYQPLGFWRN-GEFFLESS-DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 295 ~~W~~~~~i~~~~~~~~~~~~~~~-~~i~~~~~-~~~l~~yd~~t~~~~~i 343 (362)
. -.+... .........+++..+ +.+|+... .+++..+|++++..+.+
T Consensus 156 ~-~~~~~~-~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 156 T-NRRILA-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp C-CCEEEE-CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred C-CcEEEE-ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 2 112111 111122344555554 45666654 57899999987654433
No 220
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=32.83 E-value=3.3e+02 Score=25.86 Aligned_cols=152 Identities=12% Similarity=0.058 Sum_probs=71.9
Q ss_pred ccEEEEEcCCCCceecccCcccceeecCCCCccEEECce-EEEEeecCCCCccEEEEEECCCc-eeeEecCCCCCCCCCC
Q 041235 181 LPVAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGY-CYWVASGHNSYNASILSFSMSDE-VFEEIKGPNFPQITTY 258 (362)
Q Consensus 181 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~~-~~~~i~~P~~~~~~~~ 258 (362)
..+.+++..++.-+.+.......... ......-||. ++....+.......|..+|+.++ ..+.+....... +
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~---~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~---~ 308 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFL---TNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH---Y 308 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEE---EEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS---C
T ss_pred eEEEEEECCCCceEeeccCCCCceeE---eeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC---e
Confidence 46778888776544333210000000 0011122565 55444333223458999999987 665542111110 0
Q ss_pred CCCCCceeEEEEE--cCeEEEEEecCCCCEEEEEEEcC-CeeeEEEEecCCCc-ceeeEEEeeCCe-EEEEEe-C----C
Q 041235 259 DESEMTSWRIGIY--DGSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFGPFME-AYQPLGFWRNGE-FFLESS-D----N 328 (362)
Q Consensus 259 ~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~-~~~~~~~~~~~~-i~~~~~-~----~ 328 (362)
..........- +|++.++.. .+....||.++. .. .+..+..... ....+.+..+++ +++... + .
T Consensus 309 --~~~~~~~~~sp~~dg~~l~~~~--~~g~~~l~~~~~~~~--~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 309 --VEPLHPLTFLPGSNNQFIWQSR--RDGWNHLYLYDTTGR--LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp --CCCCSCCEECTTCSSEEEEEEC--TTSSCEEEEEETTSC--EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred --ECccCCceeecCCCCEEEEEEc--cCCccEEEEEECCCC--EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 00000011222 677544433 345788999873 21 2233322221 223356666765 445443 2 3
Q ss_pred eEEEEECCCCeEEEEE
Q 041235 329 RLVLYDSRYEEIRDLE 344 (362)
Q Consensus 329 ~l~~yd~~t~~~~~i~ 344 (362)
.++.+|+++++.+.+.
T Consensus 383 ~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLT 398 (706)
T ss_dssp EEEEEETTCCCCEESC
T ss_pred EEEEEEcCCCCceecc
Confidence 7888999888766553
No 221
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=31.90 E-value=2.3e+02 Score=23.81 Aligned_cols=111 Identities=10% Similarity=0.065 Sum_probs=65.1
Q ss_pred EEECceEEEEeecCCCCccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEE
Q 041235 214 VYLNGYCYWVASGHNSYNASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMM 292 (362)
Q Consensus 214 v~~~G~lywl~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l 292 (362)
...++.+|-+++.. ..+.+||..+.+- ..++.+..- +.|+.-+++|++... .. .|+.+
T Consensus 102 t~~g~~Ly~ltw~~----~~v~V~D~~Tl~~~~ti~~~~eG------------wGLt~Dg~~L~vSdG---s~--~l~~i 160 (268)
T 3nok_A 102 ASDGERLYQLTWTE----GLLFTWSGMPPQRERTTRYSGEG------------WGLCYWNGKLVRSDG---GT--MLTFH 160 (268)
T ss_dssp EECSSCEEEEESSS----CEEEEEETTTTEEEEEEECSSCC------------CCEEEETTEEEEECS---SS--EEEEE
T ss_pred EEeCCEEEEEEccC----CEEEEEECCcCcEEEEEeCCCce------------eEEecCCCEEEEECC---CC--EEEEE
Confidence 44567899988764 3899999987655 556665321 234444566666642 33 46666
Q ss_pred cCCeeeEEEEecCCC---ccee--eEEEeeCCeEEEEE-eCCeEEEEECCCCeE-EEEEEe
Q 041235 293 KGGFWTKHLSFGPFM---EAYQ--PLGFWRNGEFFLES-SDNRLVLYDSRYEEI-RDLEIT 346 (362)
Q Consensus 293 ~~~~W~~~~~i~~~~---~~~~--~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~-~~i~~~ 346 (362)
+...=..+.+|.... .+.. -+. +.+|.++.-. ....+..-|++|+++ ++|...
T Consensus 161 Dp~T~~v~~~I~V~~~g~~v~~lNeLe-~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 161 EPDGFALVGAVQVKLRGQPVELINELE-CANGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp CTTTCCEEEEEECEETTEECCCEEEEE-EETTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred cCCCCeEEEEEEeCCCCcccccccccE-EeCCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 553333444444211 1111 122 2377776544 378899999999987 556654
No 222
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=31.23 E-value=2.5e+02 Score=23.96 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=36.2
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEec--CC--CcceeeEEEeeCCeEEEEEeCCeEEEEECCCCeEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFG--PF--MEAYQPLGFWRNGEFFLESSDNRLVLYDSRYEEIR 341 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~--~~--~~~~~~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~ 341 (362)
+|+..++.. .+..+.+|.+....-....... .. ............+.+++...++.+.+||+.+++..
T Consensus 256 ~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 256 DGLHLLTVG--TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp TSSEEEEEE--TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred CCCEEEEec--CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 566555555 4678999998772111111000 00 01111111222455667777889999999887643
No 223
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=30.50 E-value=3.9e+02 Score=26.02 Aligned_cols=121 Identities=12% Similarity=0.194 Sum_probs=67.0
Q ss_pred EEECceEEEEeecC------CCCccEEEEEECCC--------ceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEE
Q 041235 214 VYLNGYCYWVASGH------NSYNASILSFSMSD--------EVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLY 279 (362)
Q Consensus 214 v~~~G~lywl~~~~------~~~~~~il~fD~~~--------~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~ 279 (362)
.+.+|.+|..+... ......|++.|+.+ ..|+.+-.|... .....+...++.|.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~l~~~~ 366 (711)
T 4hvt_A 296 GSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN---------EVFNFISTTKDRVFLAT 366 (711)
T ss_dssp EEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT---------EEEEEEEECSSCEEEEE
T ss_pred eeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC---------CeEEEEEEECCEEEEEE
Confidence 36788998876432 01245799999775 367764444322 12334555677777777
Q ss_pred ecCCCCEEEEEEEcCCeeeEEEEecCC-CcceeeEEEeeC-CeEEEEEe----CCeEEEEECCCCeEEEEE
Q 041235 280 SEESGHSFSLWMMKGGFWTKHLSFGPF-MEAYQPLGFWRN-GEFFLESS----DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 280 ~~~~~~~~~iW~l~~~~W~~~~~i~~~-~~~~~~~~~~~~-~~i~~~~~----~~~l~~yd~~t~~~~~i~ 344 (362)
.......+.++.++.+.|.....+... ......+....+ +.+++... ...++.||++ ++.+.+.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~ 436 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELKIIR 436 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEE
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEe
Confidence 654555666666666777543223322 122222222233 34555433 5779999987 6655443
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=30.33 E-value=3.7e+02 Score=25.78 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=23.3
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCCc--eeeE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSDE--VFEE 246 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~--~~~~ 246 (362)
...++.+|.+|..+.++ .+.++|..++ .|+.
T Consensus 122 ~~~a~~~~~v~v~~~dg-----~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 122 RGVALWKGKVYVGAWDG-----RLIALDAATGKEVWHQ 154 (677)
T ss_dssp CCCEEETTEEEEECTTS-----EEEEEETTTCCEEEEE
T ss_pred CCceEECCEEEEEcCCC-----EEEEEECCCCCEEeee
Confidence 45667899999987766 8999998654 4553
No 225
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=29.60 E-value=3e+02 Score=24.37 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=42.4
Q ss_pred cCeEEEEEecCCCCEEEEEEE--cC-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEeC----------CeEEEEECCCC
Q 041235 272 DGSLSLLYSEESGHSFSLWMM--KG-GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSD----------NRLVLYDSRYE 338 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l--~~-~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~----------~~l~~yd~~t~ 338 (362)
+|+..++... ....+.||.+ .. ..+..+..+... ....-+.+.+ +.+++.... -+++.++.+++
T Consensus 318 ~~~~l~~~~~-~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~ 394 (450)
T 2vdu_B 318 NLPFVAFFVE-ATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN-DEFQVTLDNKESSGVQKNFAKFIEYNLNEN 394 (450)
T ss_dssp SSSEEEEEET-TCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET-TEEEEEECCTTCCSSCCCSEEEEEEETTTT
T ss_pred CCCEEEEEEC-CCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC-CcEEEEEecccCCCCCCcceEEEEEEcCCC
Confidence 4555555442 4789999999 33 566666666543 3334455544 455554332 17888899998
Q ss_pred eEEEE
Q 041235 339 EIRDL 343 (362)
Q Consensus 339 ~~~~i 343 (362)
+++..
T Consensus 395 ~~~~~ 399 (450)
T 2vdu_B 395 SFVVN 399 (450)
T ss_dssp EEEEC
T ss_pred eEEEc
Confidence 88633
No 226
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=29.42 E-value=2.3e+02 Score=24.71 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=21.2
Q ss_pred CCeEEEEEeCCeEEEEECCCCeEEEEE
Q 041235 318 NGEFFLESSDNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 318 ~~~i~~~~~~~~l~~yd~~t~~~~~i~ 344 (362)
++.+|+...++++++.|++|++..+-.
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 455666667899999999999887654
No 227
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=29.34 E-value=2.6e+02 Score=24.95 Aligned_cols=65 Identities=14% Similarity=0.121 Sum_probs=37.6
Q ss_pred CeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 273 GSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 273 g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
+.+.+.+. .+..+.||.++.. ..+...........-+++..+|+.++.. .++.+..||++.+..+
T Consensus 162 ~~~las~s--~Dg~v~iwD~~~~--~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~ 227 (434)
T 2oit_A 162 PSMVAVCL--ADGSIAVLQVTET--VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKK 227 (434)
T ss_dssp TTEEEEEE--TTSCEEEEEESSS--EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEE
T ss_pred CCEEEEEE--CCCeEEEEEcCCC--cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccc
Confidence 44444444 4778999999764 2222222112223445556677766554 4788999999844333
No 228
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=29.23 E-value=2.9e+02 Score=24.24 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=39.5
Q ss_pred cCeEEEEEecCCCCEEEEEEEcC-CeeeEEEEecCCCcceeeEEEeeCCe-EEEEE-eCCeEEEEECCC
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKG-GFWTKHLSFGPFMEAYQPLGFWRNGE-FFLES-SDNRLVLYDSRY 337 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~-~~~~l~~yd~~t 337 (362)
++.+.+++. ....+.||.+.. .....+..+.........+.+..++. +++.. .++.+.+||+++
T Consensus 243 ~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 243 HESLFGSVA--DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CTTEEEEEE--TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCEEEEEe--CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 455666655 478999999876 32333333433233344556666665 55444 478899999987
No 229
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=28.82 E-value=2.9e+02 Score=24.06 Aligned_cols=98 Identities=12% Similarity=0.154 Sum_probs=53.2
Q ss_pred EEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcce
Q 041235 233 SILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAY 310 (362)
Q Consensus 233 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~ 310 (362)
.|..+|+.+.+- ..+..|... .....+.- -+|.+.+... .+..+.||.+....-.....+... ...
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~-~~v 260 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRH---------GAVSSICIDEECCVLILGT--TRGIIDIWDIRFNVLIRSWSFGDH-API 260 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGG---------CCEEEEEECTTSCEEEEEE--TTSCEEEEETTTTEEEEEEBCTTC-EEE
T ss_pred eEEEEeCCCCeeeEEEccCCCC---------CceEEEEECCCCCEEEEEc--CCCeEEEEEcCCccEEEEEecCCC-Cce
Confidence 899999987654 334443211 11223322 2566666665 477899999876332222222211 111
Q ss_pred eeEEEe----eCCeEEEEEe-CCeEEEEECCCCeEEE
Q 041235 311 QPLGFW----RNGEFFLESS-DNRLVLYDSRYEEIRD 342 (362)
Q Consensus 311 ~~~~~~----~~~~i~~~~~-~~~l~~yd~~t~~~~~ 342 (362)
.-+.+. .++.+++... ++.+.+||+++++...
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQY 297 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEE
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEE
Confidence 222221 2455665554 6779999999887544
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=28.82 E-value=3.4e+02 Score=24.85 Aligned_cols=97 Identities=10% Similarity=0.106 Sum_probs=56.7
Q ss_pred ccEEEEEECCCcee-eEecCCCCCCCCCCCCCCCceeEE---EEEcCeEEEEEec----CCCCEEEEEEEcCCeeeEEEE
Q 041235 231 NASILSFSMSDEVF-EEIKGPNFPQITTYDESEMTSWRI---GIYDGSLSLLYSE----ESGHSFSLWMMKGGFWTKHLS 302 (362)
Q Consensus 231 ~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l---~~~~g~L~l~~~~----~~~~~~~iW~l~~~~W~~~~~ 302 (362)
...|..||+.+.+- +.++++..- . ....+ ..-+|+.+.+... ....++.+|..+++.|..+-.
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g-------~--~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEEN-------R--MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTE-------E--EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCC-------C--ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 45899999987643 446664211 0 11111 1234654444332 145678888887788888776
Q ss_pred ecCCC------------------cceeeEEEeeCCeEEEEEe--CCeEEEEECC
Q 041235 303 FGPFM------------------EAYQPLGFWRNGEFFLESS--DNRLVLYDSR 336 (362)
Q Consensus 303 i~~~~------------------~~~~~~~~~~~~~i~~~~~--~~~l~~yd~~ 336 (362)
|+... ....-+.+..+|+.+++.+ .+.+..||..
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 64221 1123455667888766544 6789999985
No 231
>3s3x_D Psalmotoxin-1; acid-sensing, ION channel, membrane protein, sodium channel, membrane, glycoprotein, ION transport, membrane; HET: NAG; 2.99A {Psalmopoeus cambridgei} PDB: 2kni_A 1lmm_A 4fz0_M* 4fz1_D*
Probab=28.78 E-value=29 Score=18.27 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=18.2
Q ss_pred eecccccEEEeecCcEEEEeccc
Q 041235 104 LGPCDGIFCFFENENIYLWNVSM 126 (362)
Q Consensus 104 ~~s~~GLl~~~~~~~~~v~NP~T 126 (362)
-++|.||-|......+-||-|.|
T Consensus 14 gdcceglecwkrrrsfevcvpkt 36 (37)
T 3s3x_D 14 GDCCEGLECWKRRRSFEVCVPKT 36 (37)
T ss_dssp TCBCTTEEEECCSSSCCEEEECC
T ss_pred cchhhhHHHHHhccceeeecCCC
Confidence 35688999998877788887765
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=28.29 E-value=4.1e+02 Score=25.56 Aligned_cols=179 Identities=8% Similarity=0.090 Sum_probs=86.4
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.|||..+++....-.... .. ...+.+.+.. .+ ++... .. -.+.||+..++....
T Consensus 34 ~g~v~iwd~~~~~~~~~~~~~~---~~------v~~~~~s~~~-~~-l~~~~----~d-------g~i~vw~~~~~~~~~ 91 (814)
T 3mkq_A 34 SGRVEIWNYETQVEVRSIQVTE---TP------VRAGKFIARK-NW-IIVGS----DD-------FRIRVFNYNTGEKVV 91 (814)
T ss_dssp TSEEEEEETTTTEEEEEEECCS---SC------EEEEEEEGGG-TE-EEEEE----TT-------SEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCceEEEEecCC---Cc------EEEEEEeCCC-CE-EEEEe----CC-------CeEEEEECCCCcEEE
Confidence 4567899988876543222111 11 4566666643 22 33221 12 467888887765432
Q ss_pred ccc-CcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCc-eeeE-ecCCCCCCCCCCCCCCCceeEEEEE-
Q 041235 196 LEG-LFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDE-VFEE-IKGPNFPQITTYDESEMTSWRIGIY- 271 (362)
Q Consensus 196 ~~~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~-~~~~-i~~P~~~~~~~~~~~~~~~~~l~~~- 271 (362)
.-. ... ... .-...-+|..-..+.. ...|..+|+.++ .... +.... .....+.-.
T Consensus 92 ~~~~~~~-~v~-----~~~~s~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~-----------~~v~~~~~~p 150 (814)
T 3mkq_A 92 DFEAHPD-YIR-----SIAVHPTKPYVLSGSD----DLTVKLWNWENNWALEQTFEGHE-----------HFVMCVAFNP 150 (814)
T ss_dssp EEECCSS-CEE-----EEEECSSSSEEEEEET----TSEEEEEEGGGTSEEEEEEECCS-----------SCEEEEEEET
T ss_pred EEecCCC-CEE-----EEEEeCCCCEEEEEcC----CCEEEEEECCCCceEEEEEcCCC-----------CcEEEEEEEc
Confidence 211 100 000 0011113432222222 237889998875 3322 22111 112233333
Q ss_pred -cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEee--CCeEEEEE-eCCeEEEEECCCCeE
Q 041235 272 -DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWR--NGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 272 -~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~--~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
+|.+.++.. .+..+.+|.+....-....... .......+.+.. ++..++.. .++.+..||+++++.
T Consensus 151 ~~~~~l~~~~--~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 151 KDPSTFASGC--LDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp TEEEEEEEEE--TTSEEEEEETTCSSCSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred CCCCEEEEEe--CCCeEEEEECCCCcceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 455555554 4789999998762211111111 112223344444 66665554 478899999988764
No 233
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=28.18 E-value=3.8e+02 Score=25.13 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=55.1
Q ss_pred cEEEEEECCC------ceeeEecCCCCCCCCCCCCCCCceeEEEEEcCe-EEEEEecC-----CCCEEEEEEEc-CCeee
Q 041235 232 ASILSFSMSD------EVFEEIKGPNFPQITTYDESEMTSWRIGIYDGS-LSLLYSEE-----SGHSFSLWMMK-GGFWT 298 (362)
Q Consensus 232 ~~il~fD~~~------~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~-L~l~~~~~-----~~~~~~iW~l~-~~~W~ 298 (362)
..|..+|+.+ +..+.+.. ... .........-+|+ |+...... ....+.+|.++ +..+.
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~-~~~--------~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSD-DAH--------RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSC-SCS--------SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred eEEEEEECCCCccccCCceeEEEe-cCC--------CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 5789999988 55544430 111 0001111233565 54444332 22467777777 35444
Q ss_pred EEEEecCC-CcceeeEEEeeCCeEEEEEe-CC--eEEEEECCCCeEEEE
Q 041235 299 KHLSFGPF-MEAYQPLGFWRNGEFFLESS-DN--RLVLYDSRYEEIRDL 343 (362)
Q Consensus 299 ~~~~i~~~-~~~~~~~~~~~~~~i~~~~~-~~--~l~~yd~~t~~~~~i 343 (362)
+...+... ........+..+|++++... ++ +++.+|+++++++.+
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l 280 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL 280 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES
T ss_pred ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec
Confidence 44333321 22233444556788776654 33 799999988887765
No 234
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=27.95 E-value=4e+02 Score=25.31 Aligned_cols=178 Identities=12% Similarity=0.097 Sum_probs=82.3
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCcee
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSWRD 195 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 195 (362)
+..+.|||...+....+.......... ...+.+.+....-.++... .+ -.+.+++..++.-..
T Consensus 493 D~~i~iwd~~~~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~~l~s~s----~d-------~~v~vwd~~~~~~~~ 555 (694)
T 3dm0_A 493 DRTIKLWNTLGECKYTISEGGEGHRDW------VSCVRFSPNTLQPTIVSAS----WD-------KTVKVWNLSNCKLRS 555 (694)
T ss_dssp TSCEEEECTTSCEEEEECSSTTSCSSC------EEEEEECSCSSSCEEEEEE----TT-------SCEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCcceeeccCCCCCCCc------EEEEEEeCCCCcceEEEEe----CC-------CeEEEEECCCCcEEE
Confidence 567888887655443333222111111 4556666654333344332 11 467888877653221
Q ss_pred c-ccCcccceeecCCCCccEE--ECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEE-
Q 041235 196 L-EGLFQMGHYYGSDSTDNVY--LNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIY- 271 (362)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~- 271 (362)
. .... ....++. -+|.+...+.. ...|..+|+.+..-.. .+.... ....+.-.
T Consensus 556 ~~~~h~--------~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~~~-~~~~~~----------~v~~~~~sp 612 (694)
T 3dm0_A 556 TLAGHT--------GYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKKLY-SLEANS----------VIHALCFSP 612 (694)
T ss_dssp EECCCS--------SCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEEEE-CCBCSS----------CEEEEEECS
T ss_pred EEcCCC--------CCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCceEE-EecCCC----------cEEEEEEcC
Confidence 1 1100 0011111 24554444333 2378889988765321 111111 12233333
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCC---------------C--cceeeEEEeeCCeEEEEE-eCCeEEEE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPF---------------M--EAYQPLGFWRNGEFFLES-SDNRLVLY 333 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~---------------~--~~~~~~~~~~~~~i~~~~-~~~~l~~y 333 (362)
+|.+..... ...+.||.++...=......... . .....+.+..+|..++.. .++.+.+|
T Consensus 613 ~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW 689 (694)
T 3dm0_A 613 NRYWLCAAT---EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689 (694)
T ss_dssp SSSEEEEEE---TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCcEEEEEc---CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEE
Confidence 344433332 56799999876321111111100 0 012234555678777665 47888899
Q ss_pred ECC
Q 041235 334 DSR 336 (362)
Q Consensus 334 d~~ 336 (362)
|+.
T Consensus 690 ~i~ 692 (694)
T 3dm0_A 690 GIG 692 (694)
T ss_dssp EC-
T ss_pred ecc
Confidence 875
No 235
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=27.45 E-value=4e+02 Score=25.25 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=58.3
Q ss_pred EEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCccee
Q 041235 233 SILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQ 311 (362)
Q Consensus 233 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~ 311 (362)
.|..+|+.+......-... ......+.. -+|++.+.+. .+..+.||.+.... .+..+.. .....
T Consensus 542 ~v~vwd~~~~~~~~~~~~h----------~~~v~~v~~spdg~~l~sg~--~Dg~i~iwd~~~~~--~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 542 TVKVWNLSNCKLRSTLAGH----------TGYVSTVAVSPDGSLCASGG--KDGVVLLWDLAEGK--KLYSLEA-NSVIH 606 (694)
T ss_dssp CEEEEETTTCCEEEEECCC----------SSCEEEEEECTTSSEEEEEE--TTSBCEEEETTTTE--EEECCBC-SSCEE
T ss_pred eEEEEECCCCcEEEEEcCC----------CCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCc--eEEEecC-CCcEE
Confidence 7888998876654321111 112223333 3577666665 47899999987632 3333332 22344
Q ss_pred eEEEeeCCeEEEEEeCCeEEEEECCCCeEE
Q 041235 312 PLGFWRNGEFFLESSDNRLVLYDSRYEEIR 341 (362)
Q Consensus 312 ~~~~~~~~~i~~~~~~~~l~~yd~~t~~~~ 341 (362)
.+++..++.++....+..+.+||+++++..
T Consensus 607 ~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 607 ALCFSPNRYWLCAATEHGIKIWDLESKSIV 636 (694)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEE
T ss_pred EEEEcCCCcEEEEEcCCCEEEEECCCCCCh
Confidence 566667788888778888999999998754
No 236
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=27.32 E-value=1.3e+02 Score=26.30 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=20.9
Q ss_pred ECceEEEEeecCCCCccEEEEEECCCcee
Q 041235 216 LNGYCYWVASGHNSYNASILSFSMSDEVF 244 (362)
Q Consensus 216 ~~G~lywl~~~~~~~~~~il~fD~~~~~~ 244 (362)
.+|.+|.-..++ .+.++|..+++-
T Consensus 110 ~~g~Vy~Gs~~g-----~l~ald~~tG~~ 133 (339)
T 2be1_A 110 EDEKVYTGSMRT-----IMYTINMLNGEI 133 (339)
T ss_dssp CCEEEEECEEEE-----EEEEEETTTCCE
T ss_pred cCCEEEEEecCC-----EEEEEECCCCcE
Confidence 899999998887 899999887654
No 237
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=26.25 E-value=3.2e+02 Score=23.68 Aligned_cols=65 Identities=8% Similarity=0.107 Sum_probs=39.0
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCe-EEEEE-eCCeEEEEECCCCeE
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGE-FFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~-~~~~l~~yd~~t~~~ 340 (362)
+|++.+.+. .+.++.||.+.... .+..+.........+++..++. +++.. .++.+..||+++++.
T Consensus 155 d~~~las~s--~D~tv~~Wd~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 155 AEQVIASVG--DDCTLIIWRLTDEG--PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp EEEEEEEEE--TTSEEEEEEEETTE--EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred CCCEEEEEE--CCCeEEEEECCCCc--eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 577766666 58899999997632 1222211122233455555554 44443 578899999998764
No 238
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=26.14 E-value=3e+02 Score=23.38 Aligned_cols=94 Identities=14% Similarity=0.249 Sum_probs=53.3
Q ss_pred cEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEEE--E-cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCC
Q 041235 232 ASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIGI--Y-DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFM 307 (362)
Q Consensus 232 ~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~~--~-~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~ 307 (362)
..|..+|+.+.+.. .+..... ....+.. . +|.+.+... .+..+.+|.+....- +..+....
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~g~~l~sgs--~Dg~v~~wd~~~~~~--~~~~~~h~ 240 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGHGA-----------DVLCLDLAPSETGNTFVSGG--CDKKAMVWDMRSGQC--VQAFETHE 240 (354)
T ss_dssp SEEEEEETTTCCEEEEEECCSS-----------CEEEEEECCCSSCCEEEEEE--TTSCEEEEETTTCCE--EEEECCCS
T ss_pred CcEEEEeCCCCeEEEEEcCCCC-----------CeEEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCcE--EEEecCCC
Confidence 37888998876542 2321111 1112221 1 356655555 478899999876432 23333222
Q ss_pred cceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeE
Q 041235 308 EAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 308 ~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
.....+.+.+++..++.. .++.+..||+++++.
T Consensus 241 ~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 334445566677766554 478899999987753
No 239
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=25.67 E-value=65 Score=16.38 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=14.3
Q ss_pred EEEeCCeEEEEECCCCeEE
Q 041235 323 LESSDNRLVLYDSRYEEIR 341 (362)
Q Consensus 323 ~~~~~~~l~~yd~~t~~~~ 341 (362)
+....++.++||..|++-.
T Consensus 5 ~~~~~g~~YYyN~~T~~s~ 23 (27)
T 1e0n_A 5 IIHENGRPLYYNAEQKTKL 23 (27)
T ss_dssp EEESSSSEEEEETTTTEEE
T ss_pred EECCCCCeEEEECCCCCEe
Confidence 3445788999999998643
No 240
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=25.30 E-value=4.7e+02 Score=25.25 Aligned_cols=103 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred EEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEE
Q 041235 222 WVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHL 301 (362)
Q Consensus 222 wl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~ 301 (362)
|++... .+..||..++.|......... ....+...+|.|.+.+. . .+..+..+........
T Consensus 77 WigT~~-----Gl~~yd~~~~~f~~~~~~~~~----------~i~~i~~~~g~lWigt~---~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 77 YMGTDN-----GILVYNYRADRYEQPETDFPT----------DVRTMALQGDTLWLGAL---N-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp EEEETT-----EEEEEETTTTEECCCSCCCCS----------CEEEEEEETTEEEEEET---T-EEEEEETTTCCEEEEC
T ss_pred EEEeCC-----CeEEEeCCCCEEECcccCCCc----------eEEEEEecCCcEEEEcC---C-cceeEeCCCCeEEEec
Q ss_pred EecCCCcceeeEEEeeC-CeEEEEEeCCeEEEEECCCCeEEEE
Q 041235 302 SFGPFMEAYQPLGFWRN-GEFFLESSDNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 302 ~i~~~~~~~~~~~~~~~-~~i~~~~~~~~l~~yd~~t~~~~~i 343 (362)
.............+..+ +.-+.+.+...++.||+++++++.+
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~ 180 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGI 180 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEE
T ss_pred cCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEe
No 241
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=24.85 E-value=32 Score=22.27 Aligned_cols=31 Identities=23% Similarity=0.155 Sum_probs=20.7
Q ss_pred CCC--CCCCCHHHHHHHHccCC--ccccccccccc
Q 041235 1 MTG--YRELSHDLLVETLSRLP--VKSLMRFRCVS 31 (362)
Q Consensus 1 ~~~--~~~LP~dll~~IL~rLp--~~~l~r~r~Vc 31 (362)
|+. ++.||.||-..|+.-+. +.++--|.-|+
T Consensus 4 M~~~wL~~LP~~Lq~kV~aIV~~~PsSl~VF~~Ly 38 (70)
T 2lh0_A 4 MSKLFLDELPESLSRKIGTVVRVLPSSLEIFEELY 38 (70)
T ss_dssp SSCCGGGGSCHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred chHHHHHhCCHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 666 67899999998865443 44555555443
No 242
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=24.80 E-value=3.3e+02 Score=23.39 Aligned_cols=178 Identities=14% Similarity=0.119 Sum_probs=91.0
Q ss_pred cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCCCc-e
Q 041235 116 NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTNSW-R 194 (362)
Q Consensus 116 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W-~ 194 (362)
+..+.|||..+++....-.... .. ...+.+.+..+ .++... .. -.+.+|+..++.= +
T Consensus 118 dg~i~iwd~~~~~~~~~~~~h~---~~------v~~~~~~~~~~--~l~s~s----~d-------~~i~iwd~~~~~~~~ 175 (420)
T 3vl1_A 118 EGDIKVLDSNFNLQREIDQAHV---SE------ITKLKFFPSGE--ALISSS----QD-------MQLKIWSVKDGSNPR 175 (420)
T ss_dssp TSCEEEECTTSCEEEEETTSSS---SC------EEEEEECTTSS--EEEEEE----TT-------SEEEEEETTTCCCCE
T ss_pred CCCEEEEeCCCcceeeeccccc---Cc------cEEEEECCCCC--EEEEEe----CC-------CeEEEEeCCCCcCce
Confidence 6789999999887765532221 11 56677777533 233221 11 4678888776421 1
Q ss_pred ecccCcccceeecCCCCccE--EECceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEE--
Q 041235 195 DLEGLFQMGHYYGSDSTDNV--YLNGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIG-- 269 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~-- 269 (362)
...... ..-.++ .-+|.....+..+ ..|..+|+.+.+.. .+..+... ......+.
T Consensus 176 ~~~~h~--------~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~--------~~~v~~~~~~ 235 (420)
T 3vl1_A 176 TLIGHR--------ATVTDIAIIDRGRNVLSASLD----GTIRLWECGTGTTIHTFNRKENP--------HDGVNSIALF 235 (420)
T ss_dssp EEECCS--------SCEEEEEEETTTTEEEEEETT----SCEEEEETTTTEEEEEECBTTBT--------TCCEEEEEEE
T ss_pred EEcCCC--------CcEEEEEEcCCCCEEEEEcCC----CcEEEeECCCCceeEEeecCCCC--------CCCccEEEEe
Confidence 111100 001111 1145433333322 27889998876553 33332211 00111111
Q ss_pred --------------------EEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecC-CCcceeeEEEeeCCe-EEEEE-e
Q 041235 270 --------------------IYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGP-FMEAYQPLGFWRNGE-FFLES-S 326 (362)
Q Consensus 270 --------------------~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~-~~~~~~~~~~~~~~~-i~~~~-~ 326 (362)
.-+|++.++.. .+..+.||.+.... ....+.. .......+.+..++. +++.. .
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGH--VSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE--TTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEET
T ss_pred cCCcceeeecccCcccceEEcCCCCEEEEEc--CCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeC
Confidence 12566655555 46789999986632 2333322 122344555666666 65554 4
Q ss_pred CCeEEEEECCCCe
Q 041235 327 DNRLVLYDSRYEE 339 (362)
Q Consensus 327 ~~~l~~yd~~t~~ 339 (362)
++.+..||+++++
T Consensus 312 dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 312 NGMLAQWDLRSPE 324 (420)
T ss_dssp TSEEEEEETTCTT
T ss_pred CCeEEEEEcCCCc
Confidence 7889999999863
No 243
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=24.50 E-value=92 Score=23.00 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=12.9
Q ss_pred cEEEEeccccceeccc
Q 041235 118 NIYLWNVSMNEYRIVT 133 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP 133 (362)
.+.+.||.||.|..+.
T Consensus 19 ~Vm~~Dd~tk~WlP~g 34 (130)
T 3syx_A 19 VVMTRDDSSGGWLPLG 34 (130)
T ss_dssp EEEEECSSSSCEEESS
T ss_pred EeeeEcCCCCceEeCC
Confidence 5789999999977553
No 244
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=24.48 E-value=1e+02 Score=22.90 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=20.9
Q ss_pred eEEEEEeCCeEEEEECCCCeEEEEEEecc
Q 041235 320 EFFLESSDNRLVLYDSRYEEIRDLEITGI 348 (362)
Q Consensus 320 ~i~~~~~~~~l~~yd~~t~~~~~i~~~~~ 348 (362)
+|+.....-.++.||..+++|++..+.|.
T Consensus 30 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~ 58 (134)
T 2lyd_A 30 EIVDSSSHVAFYTFNSSQNEWEKTDVEGA 58 (134)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred HHHhhCCeEEEEEecCCcCceeEcCCcce
Confidence 44555556667888889999988877663
No 245
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=23.69 E-value=3.3e+02 Score=23.01 Aligned_cols=140 Identities=7% Similarity=-0.022 Sum_probs=67.1
Q ss_pred ccEEEEEcCC--CCceecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCC
Q 041235 181 LPVAIYNFST--NSWRDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQIT 256 (362)
Q Consensus 181 ~~~~vyss~~--~~W~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~ 256 (362)
....+|-+.+ .+|+.+..+.... ...|.. ++.+|..+..+ .|+.-+=..++|+.+..+...
T Consensus 13 ~~~~~~~s~d~g~~W~~~~~~~~~~-------~~~v~~~~~~~~~~~G~~g-----~i~~s~DgG~tW~~~~~~~~~--- 77 (327)
T 2xbg_A 13 VPRGSAIPALDYNPWEAIQLPTTAT-------ILDMSFIDRHHGWLVGVNA-----TLMETRDGGQTWEPRTLVLDH--- 77 (327)
T ss_dssp -----CCCBCSSCCEEEEECSCSSC-------EEEEEESSSSCEEEEETTT-----EEEEESSTTSSCEECCCCCSC---
T ss_pred cccceeecCCCCCCceEeecCCCCc-------EEEEEECCCCcEEEEcCCC-----eEEEeCCCCCCCeECCCCCCC---
Confidence 3445666644 6898876532211 123333 34454443333 454444445689988655321
Q ss_pred CCCCCCCceeEEEEEcCeEEEEEecCCCCEEEEEEEcC--CeeeEEEEecCCCcceeeEEEeeCCeEEEEEeCCeEEEEE
Q 041235 257 TYDESEMTSWRIGIYDGSLSLLYSEESGHSFSLWMMKG--GFWTKHLSFGPFMEAYQPLGFWRNGEFFLESSDNRLVLYD 334 (362)
Q Consensus 257 ~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~l~~yd 334 (362)
.......+...++.++++... . .|+.-.| .+|+++............+....++.+++......++.-+
T Consensus 78 ----~~~~~~~i~~~~~~~~~~g~~--g---~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~ 148 (327)
T 2xbg_A 78 ----SDYRFNSVSFQGNEGWIVGEP--P---IMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTK 148 (327)
T ss_dssp ----CCCEEEEEEEETTEEEEEEET--T---EEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEES
T ss_pred ----CCccEEEEEecCCeEEEEECC--C---eEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEc
Confidence 011233444445676665431 2 5677666 8999876432111111223333456666555444444444
Q ss_pred CCCCeEEEEE
Q 041235 335 SRYEEIRDLE 344 (362)
Q Consensus 335 ~~t~~~~~i~ 344 (362)
-..++|+.+.
T Consensus 149 DgG~tW~~~~ 158 (327)
T 2xbg_A 149 DSGKNWQALV 158 (327)
T ss_dssp STTSSEEEEE
T ss_pred CCCCCCEEee
Confidence 4456777664
No 246
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=23.54 E-value=98 Score=22.36 Aligned_cols=40 Identities=8% Similarity=-0.052 Sum_probs=21.8
Q ss_pred cEEEEeccccceecccCCCCCCCCCCccceeeeEEee-----cCCCCCeEEEEEE
Q 041235 118 NIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGL-----DPTTNDFKLVLIL 167 (362)
Q Consensus 118 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~-----d~~~~~ykvv~~~ 167 (362)
.++.+||.|+.|...-.... ..+.+.+ |...+.|+|+...
T Consensus 12 ~V~~~d~~~~~W~p~~~g~l----------s~v~i~~~~~~~d~~~~~yrIv~~~ 56 (118)
T 1xod_A 12 VVMTRDDSSGGWLQLGGGGL----------SSVTVSKTLQPGDSGGTEFLVHGER 56 (118)
T ss_dssp EEEEECSSSSCEEEGGGCCC----------EEEEEECC---------CCEEEEEE
T ss_pred EEeeEcCCCCCEeeCCCCCc----------ccEEEEEecCcCCCCCCEEEEEEEE
Confidence 57899999998864432111 0222333 5567789999874
No 247
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=23.50 E-value=3.4e+02 Score=23.02 Aligned_cols=190 Identities=7% Similarity=-0.029 Sum_probs=0.0
Q ss_pred cEEEeecCcEEEEecccc---ceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEE
Q 041235 110 IFCFFENENIYLWNVSMN---EYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIY 186 (362)
Q Consensus 110 Ll~~~~~~~~~v~NP~T~---~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 186 (362)
.|++.....+...++.++ ....++.... .+++.+|+..+...++-+.. -.+..+
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~-----------~~~ld~d~~~~~lyw~D~~~------------~~I~r~ 62 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLED-----------AAAVDFVFSHGLIYWSDVSE------------EAIKRT 62 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEE-----------EEEEEEEGGGTEEEEEETTT------------TEEEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCc-----------cEEEEEEeCCCEEEEEECCC------------CcEEEE
Q ss_pred EcCCCCceecccCcccceeecCCCCccEE-ECceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCCCCCCce
Q 041235 187 NFSTNSWRDLEGLFQMGHYYGSDSTDNVY-LNGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYDESEMTS 265 (362)
Q Consensus 187 ss~~~~W~~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~ 265 (362)
+..++.-........+.. +..-++- .+|.+||...... .|..+|+....-+.+...... .-
T Consensus 63 ~~~g~~~~~~~~~~~l~~----p~glavd~~~g~ly~~d~~~~----~I~~~~~dG~~~~~l~~~~~~----------~P 124 (318)
T 3sov_A 63 EFNKTESVQNVVVSGLLS----PDGLACDWLGEKLYWTDSETN----RIEVSNLDGSLRKVLFWQELD----------QP 124 (318)
T ss_dssp ETTSSSCCCEEEEECCSC----CCEEEEETTTTEEEEEETTTT----EEEEEETTSCSCEEEECSSCS----------SE
T ss_pred EccCCCceEEEEcCCCCC----ccEEEEEcCCCeEEEEECCCC----EEEEEECCCCcEEEEEeCCCC----------Cc
Q ss_pred eEEEEE--cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEee-CCeEEEEEe-CCeEEEEECCCCeEE
Q 041235 266 WRIGIY--DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWR-NGEFFLESS-DNRLVLYDSRYEEIR 341 (362)
Q Consensus 266 ~~l~~~--~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~i~~~~~-~~~l~~yd~~t~~~~ 341 (362)
..++.- +|.|+.... ...-.|++++...=....-+...-.....+++.. ++.+|+... ..++..+|++.+..+
T Consensus 125 ~giavdp~~g~ly~td~---~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~ 201 (318)
T 3sov_A 125 RAIALDPSSGFMYWTDW---GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ 201 (318)
T ss_dssp EEEEEEGGGTEEEEEEC---SSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred cEEEEeCCCCEEEEEec---CCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE
Q ss_pred EE
Q 041235 342 DL 343 (362)
Q Consensus 342 ~i 343 (362)
.+
T Consensus 202 ~~ 203 (318)
T 3sov_A 202 AV 203 (318)
T ss_dssp EE
T ss_pred EE
No 248
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=23.05 E-value=3.5e+02 Score=22.94 Aligned_cols=78 Identities=8% Similarity=0.020 Sum_probs=40.5
Q ss_pred ccEEE--CceEEEEeecC-CCCccEEEEEECCCce-eeEecCCCCCCCCCCCCCCCceeEEEEE--cCeEEEEEecC-CC
Q 041235 212 DNVYL--NGYCYWVASGH-NSYNASILSFSMSDEV-FEEIKGPNFPQITTYDESEMTSWRIGIY--DGSLSLLYSEE-SG 284 (362)
Q Consensus 212 ~~v~~--~G~lywl~~~~-~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~~~~~~l~~~--~g~L~l~~~~~-~~ 284 (362)
.++.+ +|.+|+..... ......|+.||+.+++ -..+.+|.... ........++.. +|.+++..... ..
T Consensus 70 ~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~-----~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 70 LGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT-----LSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp EEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS-----CTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred eEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc-----ccccccceEEEecCCCEEEEEcCccCCC
Confidence 34544 48898876430 0001389999999877 46677764431 111111234443 35565554310 24
Q ss_pred CEEEEEEEcC
Q 041235 285 HSFSLWMMKG 294 (362)
Q Consensus 285 ~~~~iW~l~~ 294 (362)
..+.+|.++.
T Consensus 145 ~~i~v~d~~~ 154 (343)
T 2qe8_A 145 AALIRVDLQT 154 (343)
T ss_dssp CEEEEEETTT
T ss_pred CeEEEEECCC
Confidence 4666666554
No 249
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=22.94 E-value=3.7e+02 Score=23.21 Aligned_cols=92 Identities=12% Similarity=0.207 Sum_probs=52.3
Q ss_pred EEEEEECCCceeeEe-cCCCCCCCCCCCCCCCceeEEEE-EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcce
Q 041235 233 SILSFSMSDEVFEEI-KGPNFPQITTYDESEMTSWRIGI-YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAY 310 (362)
Q Consensus 233 ~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~ 310 (362)
.|..+|+.+.+.... .... .....+.- -+|...+.+. .+..+.||.++...-... +.... ..
T Consensus 146 ~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~p~~~~l~s~s--~d~~v~iwd~~~~~~~~~--~~~~~-~v 209 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQGHE-----------QDIYSLDYFPSGDKLVSGS--GDRTVRIWDLRTGQCSLT--LSIED-GV 209 (393)
T ss_dssp CEEEEETTTTEEEEEECCCS-----------SCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEE--EECSS-CE
T ss_pred eEEEEECCCCcEEEEEccCC-----------CCEEEEEEcCCCCEEEEec--CCCcEEEEECCCCeeEEE--EEcCC-Cc
Confidence 788999988765332 2111 11223322 2566555554 478999998876433222 22211 23
Q ss_pred eeEEEee-CCeEEEEE-eCCeEEEEECCCCeE
Q 041235 311 QPLGFWR-NGEFFLES-SDNRLVLYDSRYEEI 340 (362)
Q Consensus 311 ~~~~~~~-~~~i~~~~-~~~~l~~yd~~t~~~ 340 (362)
..+.+.. ++.+++.. .++.+.+||+++++.
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~ 241 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 3344444 56666554 478899999988764
No 250
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=22.32 E-value=3.2e+02 Score=22.34 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=54.2
Q ss_pred EEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEEE-EEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecC-CCcc
Q 041235 233 SILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRIG-IYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGP-FMEA 309 (362)
Q Consensus 233 ~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~-~~~~ 309 (362)
.|..+|+.+.... .+..... ....+. .-+|++.+... .+..+.+|.+.... .+..+.. ....
T Consensus 130 ~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~--~~~~~~~~~~~~ 194 (312)
T 4ery_A 130 SVRIWDVKTGKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSS--YDGLCRIWDTASGQ--CLKTLIDDDNPP 194 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSS-----------CEEEEEECTTSSEEEEEE--TTSCEEEEETTTCC--EEEEECCSSCCC
T ss_pred cEEEEECCCCEEEEEecCCCC-----------cEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCc--eeeEEeccCCCc
Confidence 7889998876542 2322111 112222 23566666655 47789999987632 2222221 1122
Q ss_pred eeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 310 YQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 310 ~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
...+.+..++..++.. .++.+..||+++++..
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 227 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 227 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence 3445566677766554 4888999999988653
No 251
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=21.97 E-value=5.3e+02 Score=24.73 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=23.7
Q ss_pred CccEEECceEEEEeecCCCCccEEEEEECCCc--eeeE
Q 041235 211 TDNVYLNGYCYWVASGHNSYNASILSFSMSDE--VFEE 246 (362)
Q Consensus 211 ~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~--~~~~ 246 (362)
..+++.+|.+|.-+.++ .|.++|..++ .|+.
T Consensus 115 ~~~~~~~g~v~v~~~dg-----~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 115 RGVAVWKGKVYVGVLDG-----RLEAIDAKTGQRAWSV 147 (689)
T ss_dssp CCCEEETTEEEEECTTS-----EEEEEETTTCCEEEEE
T ss_pred CccEEECCEEEEEccCC-----EEEEEECCCCCEeeee
Confidence 44577899999987666 8999998764 5654
No 252
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=21.92 E-value=4.6e+02 Score=23.92 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=39.1
Q ss_pred cCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEE-EeCCeEEEEECCCC
Q 041235 272 DGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLE-SSDNRLVLYDSRYE 338 (362)
Q Consensus 272 ~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~yd~~t~ 338 (362)
+|++.+... .+..+.||.++... ..+..+........-+.+..++. ++. ..++.+..||++++
T Consensus 552 ~~~~l~~~~--~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 552 EEDLVATGS--LDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp SCCEEEEEE--TTSCEEEEESSCTT-CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred CCCEEEEEc--CCCcEEEEECCCCc-eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 577666665 47799999997721 23333332233345566677888 544 45788999998763
No 253
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=21.19 E-value=3.9e+02 Score=22.89 Aligned_cols=192 Identities=12% Similarity=0.077 Sum_probs=97.2
Q ss_pred ecccccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCcc
Q 041235 105 GPCDGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLP 182 (362)
Q Consensus 105 ~s~~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 182 (362)
+..+|.|...+ ...++.+++.++....+..... .. ..++++|+..+. ++... ... ..
T Consensus 81 d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~---~~------p~glavd~~~g~--ly~~d---~~~-------~~ 139 (349)
T 3v64_C 81 HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL---ES------PGGLAVDWVHDK--LYWTD---SGT-------SR 139 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---SC------CCEEEEETTTTE--EEEEE---TTT-------TE
T ss_pred eccccEEEEEeccCCceEEEecCCCCceEEEeCCC---CC------ccEEEEecCCCe--EEEEc---CCC-------Ce
Confidence 34567776665 4567788887765444322221 11 457888876553 32221 111 36
Q ss_pred EEEEEcCCCCceecccCcccceeecCCCCccEEE---CceEEEEeecCCCCccEEEEEECCCceeeEecCCCCCCCCCCC
Q 041235 183 VAIYNFSTNSWRDLEGLFQMGHYYGSDSTDNVYL---NGYCYWVASGHNSYNASILSFSMSDEVFEEIKGPNFPQITTYD 259 (362)
Q Consensus 183 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~ 259 (362)
+++++.++..-+.+.. ..+ ....++.+ +|.+||..... ...|..+|+....-+.+- ....
T Consensus 140 I~~~~~dG~~~~~l~~-~~l------~~P~~iavdp~~g~ly~td~~~---~~~I~r~~~dG~~~~~~~-~~~~------ 202 (349)
T 3v64_C 140 IEVANLDGAHRKVLLW-QSL------EKPRAIALHPMEGTIYWTDWGN---TPRIEASSMDGSGRRIIA-DTHL------ 202 (349)
T ss_dssp EEEEETTSCSCEEEEC-TTC------SCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEESC-CSSC------
T ss_pred EEEEcCCCCceEEEEe-CCC------CCcceEEEecCcCeEEEeccCC---CCEEEEEeCCCCCcEEEE-ECCC------
Confidence 6777766543222211 011 11122222 68999987653 358999998865443331 1111
Q ss_pred CCCCceeEEEE--EcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEe-eCCeEEEEEe-CCeEEEEEC
Q 041235 260 ESEMTSWRIGI--YDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFW-RNGEFFLESS-DNRLVLYDS 335 (362)
Q Consensus 260 ~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~i~~~~~-~~~l~~yd~ 335 (362)
. .-..|+. .+|+|+++.. ....+....++...=..+ +. .....|.++. .++.+|+... ..++..+|.
T Consensus 203 --~-~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~--~~--~~~~~P~giav~~~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 203 --F-WPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAV--IS--QGLPHPFAITVFEDSLYWTDWHTKSINSANK 273 (349)
T ss_dssp --S-CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEE--EC--SSCSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred --C-CcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEE--Ee--CCCCCceEEEEECCEEEEecCCCCeEEEEEc
Confidence 1 1123444 3677888765 345555555443111111 11 1133454443 3566777654 678999996
Q ss_pred CCCe-EEEE
Q 041235 336 RYEE-IRDL 343 (362)
Q Consensus 336 ~t~~-~~~i 343 (362)
.+++ .+.|
T Consensus 274 ~~G~~~~~i 282 (349)
T 3v64_C 274 FTGKNQEII 282 (349)
T ss_dssp TTCCSCEEE
T ss_pred cCCCccEEe
Confidence 5544 3444
No 254
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=20.94 E-value=4.1e+02 Score=23.00 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred Cc-eEEEEeecCCCCccEEEEEECCCcee-----eEecCCCC------------CCCCCCCCCCCceeEEEEEcCeEEEE
Q 041235 217 NG-YCYWVASGHNSYNASILSFSMSDEVF-----EEIKGPNF------------PQITTYDESEMTSWRIGIYDGSLSLL 278 (362)
Q Consensus 217 ~G-~lywl~~~~~~~~~~il~fD~~~~~~-----~~i~~P~~------------~~~~~~~~~~~~~~~l~~~~g~L~l~ 278 (362)
+| .+...+..+. .|..+|+.+... ..+..+.. . .......-+|++.+.
T Consensus 237 ~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 237 NSCNTFVYSSSKG----TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS----------ISDVKFSHSGRYMMT 302 (447)
T ss_dssp SCTTEEEEEETTS----CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC----------EEEEEECTTSSEEEE
T ss_pred CCCcEEEEEeCCC----eEEEEECcCCccccceeeEeccCCCccccccccccCce----------EEEEEECCCCCEEEE
Q ss_pred EecCCCCEEEEEEEcC-CeeeEEEEecCCCcc-------------eeeEEEeeCCeEEEEEe-CCeEEEEECCCCeEEEE
Q 041235 279 YSEESGHSFSLWMMKG-GFWTKHLSFGPFMEA-------------YQPLGFWRNGEFFLESS-DNRLVLYDSRYEEIRDL 343 (362)
Q Consensus 279 ~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~-------------~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~~~~~i 343 (362)
.. . ..+.||.+.. ..-............ ...+++..++..++... ++.+.+||+++++...+
T Consensus 303 ~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 303 RD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL 379 (447)
T ss_dssp EE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred ee--C-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee
Q ss_pred E
Q 041235 344 E 344 (362)
Q Consensus 344 ~ 344 (362)
.
T Consensus 380 ~ 380 (447)
T 3dw8_B 380 E 380 (447)
T ss_dssp E
T ss_pred e
No 255
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=20.86 E-value=4.3e+02 Score=23.23 Aligned_cols=65 Identities=6% Similarity=0.046 Sum_probs=40.2
Q ss_pred CeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 273 GSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEAYQPLGFWRNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 273 g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
|++.+.+. .+..+.||.+....-.... +.........+.+. ++.+++.. .++.+.+||+++++..
T Consensus 210 ~~~l~s~~--~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 210 HQFIITSD--RDEHIKISHYPQCFIVDKW-LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp CEEEEEEE--TTSCEEEEEESCTTCEEEE-CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEE
T ss_pred CcEEEEEc--CCCcEEEEECCCCceeeee-ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe
Confidence 66665555 4679999999763222111 21122234455666 77766654 5889999999998743
No 256
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=20.66 E-value=1.1e+02 Score=19.66 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=15.1
Q ss_pred CCeEEEEECCCCeEEEEE
Q 041235 327 DNRLVLYDSRYEEIRDLE 344 (362)
Q Consensus 327 ~~~l~~yd~~t~~~~~i~ 344 (362)
.-+++.||.+++.++-+.
T Consensus 39 ~iKIykyde~tNeI~LkK 56 (72)
T 3kvp_A 39 YIKIYEYNESRNEVKLKK 56 (72)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCCeEEEEE
Confidence 467999999999998765
No 257
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.25 E-value=4.1e+02 Score=22.74 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=93.2
Q ss_pred ecCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEEEEcCCC--C
Q 041235 115 ENENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAIYNFSTN--S 192 (362)
Q Consensus 115 ~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~--~ 192 (362)
.+..+.+||..+++....-......... .....+.+.+..+.+ ++... .+ -.+.+++.+.. .
T Consensus 178 ~D~~i~~wd~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~-l~sgs----~D-------~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 178 GDQTCVLWDVTTGQRISIFGSEFPSGHT----ADVLSLSINSLNANM-FISGS----CD-------TTVRLWDLRITSRA 241 (380)
T ss_dssp TTSCEEEECTTTCCEEEEECCCSSSSCC----SCEEEEEECSSSCCE-EEEEE----TT-------SCEEEEETTTTCCC
T ss_pred CCCcEEEEEcCCCcEEEEeecccCCCCc----cCeEEEEeecCCCCE-EEEEE----CC-------CeEEEEECCCCCcc
Confidence 3678999999998866433211110000 114455555433333 22221 11 46788887532 1
Q ss_pred ceecccCcccceeecCCCCccEEE--CceEEEEeecCCCCccEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEE-
Q 041235 193 WRDLEGLFQMGHYYGSDSTDNVYL--NGYCYWVASGHNSYNASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRI- 268 (362)
Q Consensus 193 W~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l- 268 (362)
-+..... . ..-.++.+ +|.....+.. ...|..+|+.++.-. .+....... .........+
T Consensus 242 ~~~~~~h------~--~~v~~v~~~p~~~~l~s~s~----D~~i~lwd~~~~~~~~~~~~~~~~~----~~~~~~v~~~~ 305 (380)
T 3iz6_a 242 VRTYHGH------E--GDINSVKFFPDGQRFGTGSD----DGTCRLFDMRTGHQLQVYNREPDRN----DNELPIVTSVA 305 (380)
T ss_dssp CEEECCC------S--SCCCEEEECTTSSEEEEECS----SSCEEEEETTTTEEEEEECCCCSSS----CCSSCSCSEEE
T ss_pred eEEECCc------C--CCeEEEEEecCCCeEEEEcC----CCeEEEEECCCCcEEEEeccccccc----ccccCceEEEE
Confidence 1111110 0 01112222 4544333332 237899999886553 333322210 0001111223
Q ss_pred EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEec----CCCcceeeEEEeeCCeEEEEEe-CCeEEEEECCCC
Q 041235 269 GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFG----PFMEAYQPLGFWRNGEFFLESS-DNRLVLYDSRYE 338 (362)
Q Consensus 269 ~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~----~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd~~t~ 338 (362)
...+|++.++.. .+..+.||.+...+ .+..+. .......-+++..+|..++... ++.+.+||++++
T Consensus 306 ~s~~g~~l~~g~--~dg~i~vwd~~~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 306 FSISGRLLFAGY--SNGDCYVWDTLLAE--MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ECSSSSEEEEEC--TTSCEEEEETTTCC--EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ECCCCCEEEEEE--CCCCEEEEECCCCc--eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 234677766655 47789999876532 233332 1122344566667888777654 788999999865
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=20.25 E-value=3.7e+02 Score=22.25 Aligned_cols=189 Identities=11% Similarity=-0.033 Sum_probs=92.3
Q ss_pred cccEEEee--cCcEEEEeccccceecccCCCCCCCCCCccceeeeEEeecCCCCCeEEEEEEEEecCCcccccCCccEEE
Q 041235 108 DGIFCFFE--NENIYLWNVSMNEYRIVTKRKARLPCNTSIYCYNFGLGLDPTTNDFKLVLILTLYDGKRLSVHDLLPVAI 185 (362)
Q Consensus 108 ~GLl~~~~--~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 185 (362)
+|-|.+.+ ...++.+||.++....++... ...++.+++..+ ..| .. ..... ..+..
T Consensus 42 ~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~-----------~p~gia~~~dG~-l~v--ad--~~~~~------~~v~~ 99 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIVSITPDGNQQIHATVEG-----------KVSGLAFTSNGD-LVA--TG--WNADS------IPVVS 99 (306)
T ss_dssp TSCEEEEETTTTEEEEECTTCCEEEEEECSS-----------EEEEEEECTTSC-EEE--EE--ECTTS------CEEEE
T ss_pred CCCEEEEeCCCCeEEEECCCCceEEEEeCCC-----------CceeEEEcCCCc-EEE--Ee--ccCCc------ceEEE
Confidence 56665555 567888998876443333211 156788887643 322 21 11110 23555
Q ss_pred EEcCCCCceecccCcccceeecCCCCccEEECceEEEEeecCCCCccEEEEEECCCceeeEe---c--CCCCCCCCCCCC
Q 041235 186 YNFSTNSWRDLEGLFQMGHYYGSDSTDNVYLNGYCYWVASGHNSYNASILSFSMSDEVFEEI---K--GPNFPQITTYDE 260 (362)
Q Consensus 186 yss~~~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~~~~~~i---~--~P~~~~~~~~~~ 260 (362)
|+..++..+.+........ .....+..+|.+|..... ...|..+|..+...+.. . .+.... ..
T Consensus 100 ~d~~~g~~~~~~~~~~~~~----~~g~~~~~~~~~~v~d~~----~g~i~~~d~~~~~~~v~~~~~~~~~~~~~----~~ 167 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIF----LNGITPLSDTQYLTADSY----RGAIWLIDVVQPSGSIWLEHPMLARSNSE----SV 167 (306)
T ss_dssp EECTTSCEEEEEECTTCSC----EEEEEESSSSEEEEEETT----TTEEEEEETTTTEEEEEEECGGGSCSSTT----CC
T ss_pred EcCCCCeEEEEEeCCCccc----cCcccccCCCcEEEEECC----CCeEEEEeCCCCcEeEEEECCcccccccc----CC
Confidence 6666666554433111110 001111234555654321 23899999876533221 0 000000 00
Q ss_pred CCCceeEEEEEcC-eEEEEEecCCCCEEEEEEEcC-Cee---eEEEEecCCCcceeeEEEeeCCeEEEEEe-CCeEEEEE
Q 041235 261 SEMTSWRIGIYDG-SLSLLYSEESGHSFSLWMMKG-GFW---TKHLSFGPFMEAYQPLGFWRNGEFFLESS-DNRLVLYD 334 (362)
Q Consensus 261 ~~~~~~~l~~~~g-~L~l~~~~~~~~~~~iW~l~~-~~W---~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~yd 334 (362)
.. ....+ .-+| .|++... ....+.++.++. ... ...... ....-+++..+|.+++... ..++..||
T Consensus 168 ~~-~pngi-s~dg~~lyv~d~--~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 168 FP-AANGL-KRFGNFLYVSNT--EKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIA 239 (306)
T ss_dssp SC-SEEEE-EEETTEEEEEET--TTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred CC-cCCCc-CcCCCEEEEEeC--CCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence 01 11123 4444 5766654 456777766653 221 111111 1245577777888877754 67899999
Q ss_pred CCCC
Q 041235 335 SRYE 338 (362)
Q Consensus 335 ~~t~ 338 (362)
++.+
T Consensus 240 ~~G~ 243 (306)
T 2p4o_A 240 PDRS 243 (306)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 9743
No 259
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=20.10 E-value=4.3e+02 Score=22.96 Aligned_cols=95 Identities=13% Similarity=0.188 Sum_probs=48.8
Q ss_pred cEEEEEECCCceee-EecCCCCCCCCCCCCCCCceeEE-EEEcCeEEEEEecCCCCEEEEEEEcCCeeeEEEEecCCCcc
Q 041235 232 ASILSFSMSDEVFE-EIKGPNFPQITTYDESEMTSWRI-GIYDGSLSLLYSEESGHSFSLWMMKGGFWTKHLSFGPFMEA 309 (362)
Q Consensus 232 ~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~ 309 (362)
..|..+|+.++... .+..... ....+ ..-+|.+.+.+. .+..+.||.+....- ...+......
T Consensus 214 ~~i~~wd~~~~~~~~~~~~h~~-----------~v~~~~~~~~g~~l~s~s--~D~~v~vwd~~~~~~--~~~~~~h~~~ 278 (410)
T 1vyh_C 214 KTIKMWEVQTGYCVKTFTGHRE-----------WVRMVRPNQDGTLIASCS--NDQTVRVWVVATKEC--KAELREHRHV 278 (410)
T ss_dssp SEEEEEETTTCCEEEEEECCSS-----------CEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCE--EEEECCCSSC
T ss_pred CeEEEEECCCCcEEEEEeCCCc-----------cEEEEEECCCCCEEEEEc--CCCeEEEEECCCCce--eeEecCCCce
Confidence 38899999876542 2221111 11122 223566666665 478899998865321 1222111111
Q ss_pred eeeEEEe--------------------eCCeEEEEE-eCCeEEEEECCCCeEE
Q 041235 310 YQPLGFW--------------------RNGEFFLES-SDNRLVLYDSRYEEIR 341 (362)
Q Consensus 310 ~~~~~~~--------------------~~~~i~~~~-~~~~l~~yd~~t~~~~ 341 (362)
..-+.+. ..+.+++.. .++.+..||+++++..
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 1111111 124555544 4788999999987643
Done!