BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041236
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 31.6 bits (70), Expect = 0.52, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 199 EDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGK----DVFYLYSLEKKIFRKFKIEGME 254
ED+H L L V + G +H Y + D S +K + IE ++
Sbjct: 595 EDIHRRLRLGNVMILTSQGTAFIHSGQEYGRTKRLLNPDYMTKVSDDKLPNKATLIEAVK 654
Query: 255 QFPFHIHMAYTPS 267
++P+ IH +Y S
Sbjct: 655 EYPYFIHDSYDSS 667
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 54/140 (38%), Gaps = 11/140 (7%)
Query: 148 PDDVAKG---AEFDLFDF--GGCLGLIHC-HARRRAHVDIWTR--NELNWIKIMCIPRLE 199
P+D KG E L ++ G +H HAR D TR L + K +
Sbjct: 19 PNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGY-KFNTEYYVN 77
Query: 200 DVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIE--GMEQFP 257
D + +YL + E +LHEN YP Y+ L K+ F KF E E P
Sbjct: 78 DAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIP 137
Query: 258 FHIHMAYTPSLTLLTRCRER 277
A L L+ + E+
Sbjct: 138 SLADWAKDKMLVLIKQNLEQ 157
>pdb|1NF5|A Chain A, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NF5|C Chain C, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NHE|A Chain A, Crystal Structure Of Lactose Synthase Complex With Udp
pdb|1NHE|C Chain C, Crystal Structure Of Lactose Synthase Complex With Udp
pdb|1NKH|A Chain A, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NKH|C Chain C, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NMM|A Chain A, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1NMM|C Chain C, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1NQI|A Chain A, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NQI|C Chain C, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NWG|A Chain A, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1NWG|C Chain C, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1O23|A Chain A, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1O23|C Chain C, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1OQM|A Chain A, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
pdb|1OQM|C Chain C, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
pdb|1PZY|A Chain A, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZY|C Chain C, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1YRO|A Chain A, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
pdb|1YRO|C Chain C, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
pdb|2FYC|A Chain A, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
pdb|2FYC|C Chain C, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
pdb|2FYD|A Chain A, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
pdb|2FYD|C Chain C, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
Length = 123
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 81 TNDYKIVRLVNDDGITHFQIYSLNTNFW-KTGILPD 115
T+ Y +VND+G T + ++ ++ FW K+ P+
Sbjct: 33 TSGYDTQAVVNDNGSTEYGLFQISDRFWCKSSEFPE 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.144 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,066,673
Number of Sequences: 62578
Number of extensions: 405363
Number of successful extensions: 953
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 6
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)