Query 041236
Match_columns 281
No_of_seqs 113 out of 1320
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.5E-37 5.3E-42 266.3 23.1 204 18-243 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.8 1.9E-18 4E-23 141.3 17.8 152 111-267 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 2.5E-16 5.4E-21 123.6 13.4 111 111-223 1-119 (129)
4 PHA02713 hypothetical protein; 98.1 0.00031 6.7E-09 68.3 18.8 207 18-254 299-546 (557)
5 KOG4441 Proteins containing BT 98.0 0.0006 1.3E-08 66.3 19.1 212 13-250 323-555 (571)
6 PHA03098 kelch-like protein; P 98.0 0.0013 2.9E-08 63.4 21.1 186 38-249 311-519 (534)
7 PLN02193 nitrile-specifier pro 97.9 0.0026 5.7E-08 60.5 21.5 196 38-251 193-420 (470)
8 PLN02153 epithiospecifier prot 97.9 0.0062 1.3E-07 55.4 22.5 235 2-253 8-296 (341)
9 PHA02790 Kelch-like protein; P 97.6 0.0076 1.6E-07 57.6 19.2 195 20-247 269-476 (480)
10 PHA03098 kelch-like protein; P 97.4 0.0074 1.6E-07 58.3 16.0 178 3-197 323-523 (534)
11 KOG4441 Proteins containing BT 97.4 0.015 3.3E-07 56.7 18.0 203 20-249 282-507 (571)
12 PHA02713 hypothetical protein; 97.4 0.0059 1.3E-07 59.4 15.2 146 13-168 342-517 (557)
13 PLN02153 epithiospecifier prot 97.4 0.05 1.1E-06 49.4 20.2 163 18-195 81-294 (341)
14 TIGR03547 muta_rot_YjhT mutatr 97.2 0.1 2.2E-06 47.5 20.1 117 130-249 168-306 (346)
15 PLN02193 nitrile-specifier pro 97.1 0.11 2.5E-06 49.4 20.7 166 18-196 224-421 (470)
16 TIGR03548 mutarot_permut cycli 96.8 0.043 9.3E-07 49.4 14.3 97 96-195 88-204 (323)
17 PRK14131 N-acetylneuraminic ac 96.8 0.28 6.2E-06 45.2 19.4 66 130-197 189-260 (376)
18 PHA02790 Kelch-like protein; P 96.7 0.082 1.8E-06 50.5 16.0 137 3-168 299-451 (480)
19 KOG1230 Protein containing rep 96.2 0.05 1.1E-06 49.9 10.3 120 130-254 207-353 (521)
20 PRK14131 N-acetylneuraminic ac 96.2 1.1 2.3E-05 41.4 19.8 143 96-247 189-374 (376)
21 TIGR03548 mutarot_permut cycli 95.6 0.73 1.6E-05 41.4 15.2 130 111-250 68-203 (323)
22 TIGR03547 muta_rot_YjhT mutatr 95.3 2.1 4.6E-05 38.7 19.6 102 96-197 168-310 (346)
23 KOG4693 Uncharacterized conser 94.1 0.54 1.2E-05 41.0 9.6 97 96-192 157-283 (392)
24 COG4257 Vgb Streptogramin lyas 93.7 0.78 1.7E-05 40.3 9.8 126 3-151 180-318 (353)
25 COG4257 Vgb Streptogramin lyas 93.3 5.5 0.00012 35.2 14.9 217 6-251 56-315 (353)
26 PF07762 DUF1618: Protein of u 91.9 1.8 3.8E-05 33.5 9.0 71 131-201 7-102 (131)
27 KOG4693 Uncharacterized conser 91.7 5.3 0.00011 35.1 12.1 202 37-253 43-288 (392)
28 KOG0379 Kelch repeat-containin 91.4 6.8 0.00015 37.6 14.1 151 97-253 89-261 (482)
29 PF13964 Kelch_6: Kelch motif 88.8 1.5 3.2E-05 27.6 5.1 40 18-57 7-47 (50)
30 PLN03215 ascorbic acid mannose 88.6 20 0.00044 33.1 20.2 87 156-250 249-355 (373)
31 KOG0379 Kelch repeat-containin 86.7 19 0.00041 34.5 13.4 152 95-252 138-312 (482)
32 KOG1230 Protein containing rep 85.4 17 0.00037 33.9 11.6 139 131-276 99-253 (521)
33 PF02191 OLF: Olfactomedin-lik 84.8 26 0.00056 30.5 16.8 122 111-251 74-213 (250)
34 PF13418 Kelch_4: Galactose ox 80.0 3.7 8E-05 25.5 3.9 36 22-57 12-48 (49)
35 smart00284 OLF Olfactomedin-li 78.9 44 0.00095 29.2 16.7 127 107-251 73-218 (255)
36 PF13964 Kelch_6: Kelch motif 78.6 3.3 7.2E-05 25.9 3.4 34 112-145 8-43 (50)
37 PF12458 DUF3686: ATPase invol 72.8 33 0.00071 32.2 9.3 135 22-184 238-383 (448)
38 PF01344 Kelch_1: Kelch motif; 72.6 10 0.00022 23.1 4.4 39 17-55 6-45 (47)
39 PF10282 Lactonase: Lactonase, 71.9 77 0.0017 28.6 14.2 111 129-250 165-286 (345)
40 PF01344 Kelch_1: Kelch motif; 69.9 14 0.00031 22.4 4.7 34 112-145 8-43 (47)
41 COG2706 3-carboxymuconate cycl 68.5 95 0.0021 28.3 15.8 83 163-252 201-287 (346)
42 COG4946 Uncharacterized protei 68.2 66 0.0014 30.7 10.2 56 187-251 245-305 (668)
43 KOG0291 WD40-repeat-containing 66.6 1.2E+02 0.0026 30.7 12.1 113 112-244 252-383 (893)
44 cd01207 Ena-Vasp Enabled-VASP- 64.8 21 0.00045 27.0 5.3 56 37-102 8-65 (111)
45 smart00564 PQQ beta-propeller 60.9 20 0.00044 19.8 3.8 26 215-247 5-30 (33)
46 PF02897 Peptidase_S9_N: Proly 60.4 1.4E+02 0.0031 27.5 20.0 139 96-249 252-412 (414)
47 KOG0316 Conserved WD40 repeat- 57.6 1.3E+02 0.0028 26.2 13.0 121 21-168 27-159 (307)
48 PF13415 Kelch_3: Galactose ox 53.7 23 0.00049 21.9 3.4 22 37-58 18-39 (49)
49 KOG2055 WD40 repeat protein [G 53.0 2E+02 0.0042 27.4 10.4 105 129-252 279-386 (514)
50 PF07893 DUF1668: Protein of u 52.9 1.8E+02 0.0039 26.4 13.7 107 130-248 86-214 (342)
51 PF07646 Kelch_2: Kelch motif; 52.8 46 0.00099 20.5 4.7 41 16-56 5-48 (49)
52 PF07433 DUF1513: Protein of u 52.3 1.8E+02 0.0039 26.2 19.9 216 9-248 2-254 (305)
53 PF06433 Me-amine-dh_H: Methyl 50.8 62 0.0013 29.6 6.8 115 116-248 196-327 (342)
54 PF01011 PQQ: PQQ enzyme repea 47.1 33 0.00071 20.1 3.2 18 230-248 8-25 (38)
55 KOG1310 WD40 repeat protein [G 42.7 1.3E+02 0.0027 29.5 7.7 97 20-139 59-179 (758)
56 PF03088 Str_synth: Strictosid 40.4 83 0.0018 22.7 5.0 38 211-249 3-53 (89)
57 TIGR02658 TTQ_MADH_Hv methylam 39.1 2E+02 0.0043 26.4 8.4 58 179-248 279-338 (352)
58 PF08450 SGL: SMP-30/Gluconola 38.0 2.4E+02 0.0053 23.7 21.6 104 130-251 115-223 (246)
59 KOG1963 WD40 repeat protein [G 37.6 3E+02 0.0066 28.1 9.8 60 176-248 478-546 (792)
60 KOG2321 WD40 repeat protein [G 35.9 3E+02 0.0064 27.2 9.0 108 129-250 154-267 (703)
61 PF08268 FBA_3: F-box associat 34.3 1.3E+02 0.0028 22.8 5.6 42 234-275 21-64 (129)
62 smart00612 Kelch Kelch domain. 32.6 44 0.00096 19.6 2.3 22 37-58 14-35 (47)
63 cd01206 Homer Homer type EVH1 30.8 73 0.0016 24.0 3.4 41 37-90 10-51 (111)
64 KOG3545 Olfactomedin and relat 30.1 3.7E+02 0.0081 23.4 10.0 123 111-251 73-212 (249)
65 PF14339 DUF4394: Domain of un 28.8 1.3E+02 0.0027 26.1 5.0 54 20-87 36-91 (236)
66 KOG2048 WD40 repeat protein [G 27.2 3E+02 0.0066 27.4 7.7 100 129-248 450-555 (691)
67 KOG0279 G protein beta subunit 24.8 3.6E+02 0.0079 24.0 7.1 63 163-245 203-266 (315)
68 PF07893 DUF1668: Protein of u 22.3 5.9E+02 0.013 23.1 14.7 71 99-171 202-296 (342)
69 KOG2321 WD40 repeat protein [G 22.1 83 0.0018 30.8 2.9 42 6-53 167-212 (703)
70 cd00837 EVH1 EVH1 (Enabled, Va 21.9 3.1E+02 0.0067 20.1 5.5 53 37-102 8-62 (104)
71 PF13570 PQQ_3: PQQ-like domai 21.7 1.4E+02 0.003 17.4 3.0 21 215-242 20-40 (40)
72 KOG0295 WD40 repeat-containing 21.5 5.9E+02 0.013 23.6 8.0 67 165-248 305-371 (406)
73 KOG2315 Predicted translation 20.9 8E+02 0.017 24.0 11.8 146 22-186 230-391 (566)
74 PF13018 ESPR: Extended Signal 20.5 72 0.0016 17.0 1.3 15 41-55 7-21 (24)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2.5e-37 Score=266.27 Aligned_cols=204 Identities=23% Similarity=0.436 Sum_probs=155.7
Q ss_pred EEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCC--c-ceeccCcccccceeeeCCCCceEEEEEEeCC-
Q 041236 18 IGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLT--L-DMYGFGYINTFGFCFDQSTNDYKIVRLVNDD- 93 (281)
Q Consensus 18 ~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~--~-~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~- 93 (281)
++|||||||+.. ...++||||+||+++.||+++.... . ..+||| ||+.+++||||++....
T Consensus 1 ~~sCnGLlc~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G--------~d~~~~~YKVv~~~~~~~ 65 (230)
T TIGR01640 1 VVPCDGLICFSY-------GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLG--------YDPIEKQYKVLCFSDRSG 65 (230)
T ss_pred CcccceEEEEec-------CCcEEEECCCCCCEEecCCCCCcccccccceEEEe--------ecccCCcEEEEEEEeecC
Confidence 479999999876 3789999999999999987654211 1 146777 99999999999997742
Q ss_pred --CCcEEEEEEcCCCCccc-------------cccccce-EEeeeccCCcCceEEEEEECCCCeEE-EEeCCCCcCC-CC
Q 041236 94 --GITHFQIYSLNTNFWKT-------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFR-VILLPDDVAK-GA 155 (281)
Q Consensus 94 --~~~~~eVys~~~~~Wr~-------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~-~i~lP~~~~~-~~ 155 (281)
....++|||+++++||. +|++||+ ||++..........|++||+++|+|+ .+++|..... ..
T Consensus 66 ~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~ 145 (230)
T TIGR01640 66 NRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVD 145 (230)
T ss_pred CCCCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccccccc
Confidence 35789999999999988 7899999 99997543212238999999999999 5999976532 13
Q ss_pred eeEEEEeCCeEEE-EEecCCCCCeEEEEEEcC---CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCC
Q 041236 156 EFDLFDFGGCLGL-IHCHARRRAHVDIWTRNE---LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHG 231 (281)
Q Consensus 156 ~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~~---~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~ 231 (281)
...|++++|+||+ .... ....++||+|++ ..|+++++|+............+ +++.++|+|++...+ + ..
T Consensus 146 ~~~L~~~~G~L~~v~~~~--~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~-~~~~~~g~I~~~~~~-~--~~ 219 (230)
T TIGR01640 146 YLSLINYKGKLAVLKQKK--DTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFL-SGFTDKGEIVLCCED-E--NP 219 (230)
T ss_pred ceEEEEECCEEEEEEecC--CCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeE-eEEeeCCEEEEEeCC-C--Cc
Confidence 4689999999999 4333 235699999997 67999999986433221112557 888899999999832 0 13
Q ss_pred CcEEEEEECCCC
Q 041236 232 KDVFYLYSLEKK 243 (281)
Q Consensus 232 ~~~l~~Yd~~t~ 243 (281)
.. +++||++++
T Consensus 220 ~~-~~~y~~~~~ 230 (230)
T TIGR01640 220 FY-IFYYNVGEN 230 (230)
T ss_pred eE-EEEEeccCC
Confidence 33 999999885
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.81 E-value=1.9e-18 Score=141.26 Aligned_cols=152 Identities=22% Similarity=0.349 Sum_probs=107.4
Q ss_pred cccccce-EEeeeccCCcCceEEEEEECCCCeE-EEEeCCCCcC-CCCeeEEEEe-CCeEEE-EEecCCCCCeEEEEEEc
Q 041236 111 GILPDRI-HDTKERFRTIFSSVILCFSLVDDKF-RVILLPDDVA-KGAEFDLFDF-GGCLGL-IHCHARRRAHVDIWTRN 185 (281)
Q Consensus 111 ~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f-~~i~lP~~~~-~~~~~~L~~~-~g~L~~-~~~~~~~~~~i~IWvL~ 185 (281)
+|++||+ ||++..........|++||+++|+| +.+++|.... ......|+++ +|+||+ .+.. ....++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~--~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD--ETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEecc--CCccEEEEEEe
Confidence 6899999 9999876543334899999999999 8899998765 2356788766 589999 4443 25679999999
Q ss_pred C-----CceeeEEEecCCCCcCcccee-eeEEEEecCCcEEEEecCCCCCCC-CcEEEEEECCCCeEEEEEEecCCCCCc
Q 041236 186 E-----LNWIKIMCIPRLEDVHSSLYL-APVFFYSGAGEVLLHENDTYPSHG-KDVFYLYSLEKKIFRKFKIEGMEQFPF 258 (281)
Q Consensus 186 ~-----~~W~~~~~i~~~~~~~~~~~~-~~~~~~~~~g~ill~~~~~~~~~~-~~~l~~Yd~~t~~~~~i~~~~~~~~~~ 258 (281)
+ .+|+|.++|+..........+ .+.+.+.+++++++..+....... . .+++|+ +++.++++.+.... ..+
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~-~i~i~g-~~~~~~~~~~~~~~-~~~ 155 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKN-KIYIVG-EDGKFIEVDIEDKS-SCW 155 (164)
T ss_pred eeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCcccee-EEEEEc-CCCEEEEcccccCC-CCC
Confidence 5 689999999976653322111 222556677788887643211011 3 388998 88999999874322 125
Q ss_pred eEEEEeecC
Q 041236 259 HIHMAYTPS 267 (281)
Q Consensus 259 ~~~~~Y~eS 267 (281)
..+..|+||
T Consensus 156 ~~~~~YvpS 164 (164)
T PF07734_consen 156 PSICNYVPS 164 (164)
T ss_pred CCEEEECCC
Confidence 677899997
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.71 E-value=2.5e-16 Score=123.55 Aligned_cols=111 Identities=22% Similarity=0.347 Sum_probs=82.4
Q ss_pred cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCCCCc-CCCCeeEEEEeCCeEEEEEecC-CCCCeEEEEEEcC-
Q 041236 111 GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLPDDV-AKGAEFDLFDFGGCLGLIHCHA-RRRAHVDIWTRNE- 186 (281)
Q Consensus 111 ~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~~~-~~~~~~~L~~~~g~L~~~~~~~-~~~~~i~IWvL~~- 186 (281)
|+++||+ ||++... ......|+|||+++|+|+.|++|... .......|.+++|+||+..... .....++||+|+|
T Consensus 1 gicinGvly~~a~~~-~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 1 GICINGVLYWLAWSE-DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred CEEECcEEEeEEEEC-CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 6899999 9999862 23578999999999999999999222 2225689999999999944331 1135799999998
Q ss_pred --CceeeEEEe-cCCCC-cCccceeeeEEEEecCCcEEEEe
Q 041236 187 --LNWIKIMCI-PRLED-VHSSLYLAPVFFYSGAGEVLLHE 223 (281)
Q Consensus 187 --~~W~~~~~i-~~~~~-~~~~~~~~~~~~~~~~g~ill~~ 223 (281)
++|++.+.+ +.... ......+.+ +++.++|+|++..
T Consensus 80 ~k~~Wsk~~~~lp~~~~~~~~~~~~~~-~g~~~~Geiv~~~ 119 (129)
T PF08268_consen 80 EKQEWSKKHIVLPPSWQHFVHDCDFSF-VGVTDTGEIVFAS 119 (129)
T ss_pred ccceEEEEEEECChHHhcccCCcEEEE-EEEcCCCEEEEEE
Confidence 789998664 33322 112256777 8899999998883
No 4
>PHA02713 hypothetical protein; Provisional
Probab=98.11 E-value=0.00031 Score=68.25 Aligned_cols=207 Identities=8% Similarity=0.033 Sum_probs=118.6
Q ss_pred EEeecCeEeeeeeec-cccCcceEEEEcCcCccceecCCCccCCCc-ceeccCcccccceeeeCCCCceEEEEEEeCC--
Q 041236 18 IGCCNGLLCIVVQIH-EHAGEADLVLWNPWTGRYKTVPISVVGLTL-DMYGFGYINTFGFCFDQSTNDYKIVRLVNDD-- 93 (281)
Q Consensus 18 ~~scnGLlcl~~~~~-~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~-~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~-- 93 (281)
....+|-|.+..+.. +......+..+||.|.+|..+|+-+..... ....+ +. ||..+...+
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----------~g-----~IYviGG~~~~ 363 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----------DD-----TIYAIGGQNGT 363 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----------CC-----EEEEECCcCCC
Confidence 445677666554321 111235688999999999999875543211 11111 11 222221111
Q ss_pred -CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCC------------------cCceEEEEEECCCCe
Q 041236 94 -GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRT------------------IFSSVILCFSLVDDK 141 (281)
Q Consensus 94 -~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~------------------~~~~~IlsFD~~~e~ 141 (281)
....+|+|+..+++|.. .+.++|. |-+...... .....+.+||.++++
T Consensus 364 ~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~ 443 (557)
T PHA02713 364 NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI 443 (557)
T ss_pred CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe
Confidence 12468999999999977 4577888 876543210 013469999999999
Q ss_pred EEEE-eCCCCcCCCCeeEEEEeCCeEEE-EEecCCCCCeEEEEEEc--C-CceeeEEEecCCCCcCccceeeeEEEEecC
Q 041236 142 FRVI-LLPDDVAKGAEFDLFDFGGCLGL-IHCHARRRAHVDIWTRN--E-LNWIKIMCIPRLEDVHSSLYLAPVFFYSGA 216 (281)
Q Consensus 142 f~~i-~lP~~~~~~~~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~--~-~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~ 216 (281)
|..+ ++|... ....+..++|+|++ ..........-.+-..+ . ..|+..-.++.... ... ++ .-+
T Consensus 444 W~~v~~m~~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~------~~~-~~-~~~ 512 (557)
T PHA02713 444 WETLPNFWTGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS------ALH-TI-LHD 512 (557)
T ss_pred EeecCCCCccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc------cce-eE-EEC
Confidence 9987 444332 23567899999998 33221011111233343 2 47998776655432 111 22 236
Q ss_pred CcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEEecCC
Q 041236 217 GEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGME 254 (281)
Q Consensus 217 g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~~~~~ 254 (281)
|+|++.-... +.. .+-.||++|++|..+.-+...
T Consensus 513 ~~iyv~Gg~~---~~~-~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 513 NTIMMLHCYE---SYM-LQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred CEEEEEeeec---cee-ehhhcCcccccccchhhhcCC
Confidence 6776664210 112 377999999999999666543
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.03 E-value=0.0006 Score=66.34 Aligned_cols=212 Identities=12% Similarity=0.113 Sum_probs=126.5
Q ss_pred cCCeEEEeecCeEeeeeeec-cccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEe
Q 041236 13 VLHQLIGCCNGLLCIVVQIH-EHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVN 91 (281)
Q Consensus 13 ~~~~i~~scnGLlcl~~~~~-~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~ 91 (281)
+...-+...+|.|....+.. +.........+||.|.+|..+|+-.... .++| -- +-+.+|..+.-
T Consensus 323 r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R----~~~~--------v~--~l~g~iYavGG 388 (571)
T KOG4441|consen 323 RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR----SDFG--------VA--VLDGKLYAVGG 388 (571)
T ss_pred cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc----ccce--------eE--EECCEEEEEec
Confidence 33455667888887766544 2224578999999999999998766532 2222 00 00122222222
Q ss_pred CC---CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCc-CceEEEEEECCCCeEEEE-eCCCCcCC
Q 041236 92 DD---GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTI-FSSVILCFSLVDDKFRVI-LLPDDVAK 153 (281)
Q Consensus 92 ~~---~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~-~~~~IlsFD~~~e~f~~i-~lP~~~~~ 153 (281)
.+ .-..+|.|+..++.|.. .+.++|. |=+....... ....+.+||..+++|+.+ +++...
T Consensus 389 ~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-- 466 (571)
T KOG4441|consen 389 FDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-- 466 (571)
T ss_pred cccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--
Confidence 11 23469999999999977 5678888 8776543322 347899999999999987 555443
Q ss_pred CCeeEEEEeCCeEEE-EEecC-CCCCeEEEEEEcCCceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCC
Q 041236 154 GAEFDLFDFGGCLGL-IHCHA-RRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHG 231 (281)
Q Consensus 154 ~~~~~L~~~~g~L~~-~~~~~-~~~~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~ 231 (281)
....+..++|.|++ ..... ....+++..--+...|+....+...... .. + +..++++++.-.......-
T Consensus 467 -~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~-----~g--~-~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 467 -SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA-----VG--V-VVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred -ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc-----cc--E-EEECCEEEEEecccCcccc
Confidence 34568999999998 33221 1122333222222889998444333220 11 1 2234455555321111122
Q ss_pred CcEEEEEECCCCeEEEEEE
Q 041236 232 KDVFYLYSLEKKIFRKFKI 250 (281)
Q Consensus 232 ~~~l~~Yd~~t~~~~~i~~ 250 (281)
. ++-.||+++++|+...-
T Consensus 538 ~-~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 538 N-TVECYDPETDTWTEVTE 555 (571)
T ss_pred c-eeEEcCCCCCceeeCCC
Confidence 3 58899999999999833
No 6
>PHA03098 kelch-like protein; Provisional
Probab=98.01 E-value=0.0013 Score=63.40 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=105.7
Q ss_pred ceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCC---CCcEEEEEEcCCCCccc----
Q 041236 38 ADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD---GITHFQIYSLNTNFWKT---- 110 (281)
Q Consensus 38 ~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~---~~~~~eVys~~~~~Wr~---- 110 (281)
..++.+||.|++|..+|+.+..... ++.. +.+ =+|..+.-.+ ....+++|+..+++|+.
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~--~~~~-------~~~-----~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l 376 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKN--PGVT-------VFN-----NRIYVIGGIYNSISLNTVESWKPGESKWREEPPL 376 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCccccc--ceEE-------EEC-----CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc
Confidence 4789999999999999875532211 1100 011 0122221111 13468899999999987
Q ss_pred --------cccccce-EEeeeccCC-cCceEEEEEECCCCeEEEE-eCCCCcCCCCeeEEEEeCCeEEEE-EecCCCC--
Q 041236 111 --------GILPDRI-HDTKERFRT-IFSSVILCFSLVDDKFRVI-LLPDDVAKGAEFDLFDFGGCLGLI-HCHARRR-- 176 (281)
Q Consensus 111 --------~v~~nG~-yWl~~~~~~-~~~~~IlsFD~~~e~f~~i-~lP~~~~~~~~~~L~~~~g~L~~~-~~~~~~~-- 176 (281)
.+.++|. |-+...... .....+..||+.+++|..+ ++|... ........+|+|.+. .......
T Consensus 377 p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r---~~~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 377 IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH---YGGCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc---cCceEEEECCEEEEECCccCCCCCc
Confidence 3556777 765442211 1235789999999999987 344332 223456778999882 2211011
Q ss_pred CeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEE
Q 041236 177 AHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFK 249 (281)
Q Consensus 177 ~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~ 249 (281)
..-.+|+.+- ..|+++-.++... .... .+. -+|+|++.-......... .+..||+++++|+.+.
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~~~~~r------~~~~-~~~-~~~~iyv~GG~~~~~~~~-~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSSLNFPR------INAS-LCI-FNNKIYVVGGDKYEYYIN-EIEVYDDKTNTWTLFC 519 (534)
T ss_pred ccceEEEecCCCCceeeCCCCCccc------ccce-EEE-ECCEEEEEcCCcCCcccc-eeEEEeCCCCEEEecC
Confidence 1223777765 8899864333221 1112 222 356776654210000123 4999999999999883
No 7
>PLN02193 nitrile-specifier protein
Probab=97.94 E-value=0.0026 Score=60.52 Aligned_cols=196 Identities=11% Similarity=0.051 Sum_probs=105.8
Q ss_pred ceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCC---CCcEEEEEEcCCCCccc----
Q 041236 38 ADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD---GITHFQIYSLNTNFWKT---- 110 (281)
Q Consensus 38 ~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~---~~~~~eVys~~~~~Wr~---- 110 (281)
..++++||.|++|..+|+..........+.. ..+++. |+..+.-.+ ....+++|++.+++|+.
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~-----~v~~~~-----~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~ 262 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVR-----MVSIGS-----TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPV 262 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceE-----EEEECC-----EEEEECCCCCCCCCccEEEEECCCCEEEEcCcC
Confidence 4689999999999988653211000000000 000110 122121101 12468899999999975
Q ss_pred -----------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCCCCcC-CCCeeEEEEeCCeEEE-EEecCCCC
Q 041236 111 -----------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVA-KGAEFDLFDFGGCLGL-IHCHARRR 176 (281)
Q Consensus 111 -----------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~~~~-~~~~~~L~~~~g~L~~-~~~~~~~~ 176 (281)
.+.+++. |-+...........+.+||+.+.+|..++.|.... ......+..++|++++ .-.. ..
T Consensus 263 ~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~--g~ 340 (470)
T PLN02193 263 EEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN--GC 340 (470)
T ss_pred CCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC--CC
Confidence 2345666 66544221112346889999999999886553221 1123456778899988 3222 12
Q ss_pred CeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCC-C--------CCCCcEEEEEECCCCeE
Q 041236 177 AHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTY-P--------SHGKDVFYLYSLEKKIF 245 (281)
Q Consensus 177 ~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~-~--------~~~~~~l~~Yd~~t~~~ 245 (281)
..-++|+++- ..|+++-.+...... +..+. .. .-+++|++.-.... . ..... ++.||+.|++|
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~---R~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~nd-v~~~D~~t~~W 414 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFGVRPSE---RSVFA-SA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDG-TFALDTETLQW 414 (470)
T ss_pred ccCceEEEECCCCEEEEeccCCCCCCC---cceeE-EE-EECCEEEEECCccCCccccccCccceecc-EEEEEcCcCEE
Confidence 2356777765 889987554221111 12222 22 23456665542100 0 00124 89999999999
Q ss_pred EEEEEe
Q 041236 246 RKFKIE 251 (281)
Q Consensus 246 ~~i~~~ 251 (281)
+.+...
T Consensus 415 ~~~~~~ 420 (470)
T PLN02193 415 ERLDKF 420 (470)
T ss_pred EEcccC
Confidence 998543
No 8
>PLN02153 epithiospecifier protein
Probab=97.91 E-value=0.0062 Score=55.38 Aligned_cols=235 Identities=11% Similarity=0.053 Sum_probs=119.0
Q ss_pred ceeeecC-----CCCCcCCeEEEeecCeEeeeeeeccc--cCcceEEEEcCcCccceecCCCccCCCcceeccCcccccc
Q 041236 2 KARNLNF-----PLGKVLHQLIGCCNGLLCIVVQIHEH--AGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFG 74 (281)
Q Consensus 2 ~~~~~~~-----p~~~~~~~i~~scnGLlcl~~~~~~~--~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~ 74 (281)
.|.++.- |- ++...-+...++-|.+....... .....++++||.+++|..+|+..........++. .
T Consensus 8 ~W~~~~~~~~~~P~-pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~-----~ 81 (341)
T PLN02153 8 GWIKVEQKGGKGPG-PRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVR-----M 81 (341)
T ss_pred eEEEecCCCCCCCC-CCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceE-----E
Confidence 3666654 32 33333344567766665432111 1135799999999999998754211100001111 0
Q ss_pred eeeeCCCCceEEEEEEeCC---CCcEEEEEEcCCCCccc-----------------cccccce-EEeeeccCCc------
Q 041236 75 FCFDQSTNDYKIVRLVNDD---GITHFQIYSLNTNFWKT-----------------GILPDRI-HDTKERFRTI------ 127 (281)
Q Consensus 75 l~~d~~~~~yKVv~~~~~~---~~~~~eVys~~~~~Wr~-----------------~v~~nG~-yWl~~~~~~~------ 127 (281)
.+++ =||..+.-.+ ....+++|+..+++|+. .+..+|. |-+.......
T Consensus 82 ~~~~-----~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 82 VAVG-----TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred EEEC-----CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCc
Confidence 0011 1222221111 12368889999999974 2455666 6554322110
Q ss_pred CceEEEEEECCCCeEEEEeCCCCc-CCCCeeEEEEeCCeEEE-EEecC-------CCCCeEEEEEEcC--CceeeEEEec
Q 041236 128 FSSVILCFSLVDDKFRVILLPDDV-AKGAEFDLFDFGGCLGL-IHCHA-------RRRAHVDIWTRNE--LNWIKIMCIP 196 (281)
Q Consensus 128 ~~~~IlsFD~~~e~f~~i~lP~~~-~~~~~~~L~~~~g~L~~-~~~~~-------~~~~~i~IWvL~~--~~W~~~~~i~ 196 (281)
....+.+||+.+.+|..++.+... .......+..++|+|++ ..... .....-+||+++- ..|+++-...
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 113588999999999987543211 11123456778999988 22110 0011124566653 8899865432
Q ss_pred CCCCcCccceeeeEEEEecCCcEEEEecCCCC--------C-CCCcEEEEEECCCCeEEEEEEecC
Q 041236 197 RLEDVHSSLYLAPVFFYSGAGEVLLHENDTYP--------S-HGKDVFYLYSLEKKIFRKFKIEGM 253 (281)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~--------~-~~~~~l~~Yd~~t~~~~~i~~~~~ 253 (281)
.... .+..+. ..+ -+++|++.-..... . .... ++.||+++++|+.+...+.
T Consensus 237 ~~P~---~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~-v~~~d~~~~~W~~~~~~~~ 296 (341)
T PLN02153 237 AKPS---ARSVFA-HAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNE-GYALDTETLVWEKLGECGE 296 (341)
T ss_pred CCCC---Ccceee-eEE-ECCEEEEECcccCCcccccccccccccc-EEEEEcCccEEEeccCCCC
Confidence 1111 111222 222 24566655321000 0 0124 8999999999999864433
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=97.63 E-value=0.0076 Score=57.56 Aligned_cols=195 Identities=9% Similarity=-0.039 Sum_probs=108.5
Q ss_pred eecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCCCCcEEE
Q 041236 20 CCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQ 99 (281)
Q Consensus 20 scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~~~~~~e 99 (281)
..+|.|.+..+..+.........+||.+++|..+|+.+..... ++.. +.| =+|..+...++...++
T Consensus 269 ~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~--~~~v-------~~~-----~~iYviGG~~~~~sve 334 (480)
T PHA02790 269 HVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY--ASGV-------PAN-----NKLYVVGGLPNPTSVE 334 (480)
T ss_pred EECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc--ceEE-------EEC-----CEEEEECCcCCCCceE
Confidence 3566555544322111234678899999999999876543211 1100 011 1222222111223578
Q ss_pred EEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCCCCcCCCCeeEEEEeCCeE
Q 041236 100 IYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCL 166 (281)
Q Consensus 100 Vys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~~~~~~~~~~L~~~~g~L 166 (281)
.|+..+++|.. .+.++|. |=+..... ....+.+||..+++|..++.++... .......++|+|
T Consensus 335 ~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~--~~~~ve~ydp~~~~W~~~~~m~~~r--~~~~~~~~~~~I 410 (480)
T PHA02790 335 RWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE--TDTTTEYLLPNHDQWQFGPSTYYPH--YKSCALVFGRRL 410 (480)
T ss_pred EEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC--CCccEEEEeCCCCEEEeCCCCCCcc--ccceEEEECCEE
Confidence 89999999977 5677888 87655321 2346789999999999874433222 234567889999
Q ss_pred EEEEecCCCCCeEEEEEEcCCceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEE
Q 041236 167 GLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFR 246 (281)
Q Consensus 167 ~~~~~~~~~~~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~ 246 (281)
.+... ..++.-.+...|+..-.++.... ... .++ -+|+|++.-...-.+... .+-.||+++++|+
T Consensus 411 Yv~GG------~~e~ydp~~~~W~~~~~m~~~r~------~~~-~~v-~~~~IYviGG~~~~~~~~-~ve~Yd~~~~~W~ 475 (480)
T PHA02790 411 FLVGR------NAEFYCESSNTWTLIDDPIYPRD------NPE-LII-VDNKLLLIGGFYRGSYID-TIEVYNNRTYSWN 475 (480)
T ss_pred EEECC------ceEEecCCCCcEeEcCCCCCCcc------ccE-EEE-ECCEEEEECCcCCCcccc-eEEEEECCCCeEE
Confidence 88321 12222222388997654433221 122 222 455776664110000113 4889999999997
Q ss_pred E
Q 041236 247 K 247 (281)
Q Consensus 247 ~ 247 (281)
.
T Consensus 476 ~ 476 (480)
T PHA02790 476 I 476 (480)
T ss_pred e
Confidence 5
No 10
>PHA03098 kelch-like protein; Provisional
Probab=97.40 E-value=0.0074 Score=58.26 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=99.5
Q ss_pred eeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCC
Q 041236 3 ARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTN 82 (281)
Q Consensus 3 ~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~ 82 (281)
|..++-...++...-+...+|-|.+..+..+......+.++||.|++|..+|+.+..... ++.. ..+ +
T Consensus 323 W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~--~~~~-------~~~---~ 390 (534)
T PHA03098 323 WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN--PCVV-------NVN---N 390 (534)
T ss_pred eeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc--ceEE-------EEC---C
Confidence 555543333333344456677666555422211245788999999999999765543211 0000 011 1
Q ss_pred ceEEEEEEeC--C--CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCc---CceEEEEEECCCCeE
Q 041236 83 DYKIVRLVND--D--GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTI---FSSVILCFSLVDDKF 142 (281)
Q Consensus 83 ~yKVv~~~~~--~--~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~---~~~~IlsFD~~~e~f 142 (281)
+|..+... . ....+++|+..+++|+. .+..+|. |-+....... ....+.+||.++++|
T Consensus 391 --~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 391 --LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred --EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 22222110 1 12468999999999977 3456777 7655422110 123489999999999
Q ss_pred EEEe-CCCCcCCCCeeEEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecC
Q 041236 143 RVIL-LPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPR 197 (281)
Q Consensus 143 ~~i~-lP~~~~~~~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~ 197 (281)
..++ +|... ....+..++|+|.+..-.......-.||+.+- ..|+.....|.
T Consensus 469 ~~~~~~~~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 469 TELSSLNFPR---INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred eeCCCCCccc---ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 9884 33221 23456677999988322110122335777764 88988765443
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.39 E-value=0.015 Score=56.67 Aligned_cols=203 Identities=13% Similarity=0.096 Sum_probs=121.4
Q ss_pred eecCeEeeeeeecc-ccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCC----C
Q 041236 20 CCNGLLCIVVQIHE-HAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD----G 94 (281)
Q Consensus 20 scnGLlcl~~~~~~-~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~----~ 94 (281)
++.|.|....+..+ ......+...||.+++|..+.+-+..... +|.. .-. + +|..+.-.+ .
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~--~~~~--------~~~--~--~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCR--VGVA--------VLN--G--KLYVVGGYDSGSDR 347 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccc--ccEE--------EEC--C--EEEEEccccCCCcc
Confidence 67776666654432 22346788999999999999655433211 1111 110 0 222222111 2
Q ss_pred CcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEe-CCCCcCCCCeeEEE
Q 041236 95 ITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVIL-LPDDVAKGAEFDLF 160 (281)
Q Consensus 95 ~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~-lP~~~~~~~~~~L~ 160 (281)
...+++|+..+++|.. .+.++|. |=+...........|-.+|..+++|..+. ++... ......
T Consensus 348 l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r---~~~gv~ 424 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR---SGHGVA 424 (571)
T ss_pred cceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce---eeeEEE
Confidence 4579999999999987 4678888 87776543223467999999999999884 55422 356788
Q ss_pred EeCCeEEE-EEecCCCC---CeEEEEEEcCCceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEE
Q 041236 161 DFGGCLGL-IHCHARRR---AHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFY 236 (281)
Q Consensus 161 ~~~g~L~~-~~~~~~~~---~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~ 236 (281)
+++|.|++ ..... .. ..++..--....|+.+-.++.... ... +++ -+|.|+..-...-.+... ++-
T Consensus 425 ~~~g~iYi~GG~~~-~~~~l~sve~YDP~t~~W~~~~~M~~~R~------~~g-~a~-~~~~iYvvGG~~~~~~~~-~VE 494 (571)
T KOG4441|consen 425 VLGGKLYIIGGGDG-SSNCLNSVECYDPETNTWTLIAPMNTRRS------GFG-VAV-LNGKIYVVGGFDGTSALS-SVE 494 (571)
T ss_pred EECCEEEEEcCcCC-CccccceEEEEcCCCCceeecCCcccccc------cce-EEE-ECCEEEEECCccCCCccc-eEE
Confidence 99999999 32221 12 222222222288998766655432 222 322 455666664211000122 478
Q ss_pred EEECCCCeEEEEE
Q 041236 237 LYSLEKKIFRKFK 249 (281)
Q Consensus 237 ~Yd~~t~~~~~i~ 249 (281)
.||+++++|..+.
T Consensus 495 ~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 495 RYDPETNQWTMVA 507 (571)
T ss_pred EEcCCCCceeEcc
Confidence 9999999999984
No 12
>PHA02713 hypothetical protein; Provisional
Probab=97.39 E-value=0.0059 Score=59.41 Aligned_cols=146 Identities=9% Similarity=0.112 Sum_probs=86.6
Q ss_pred cCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCc-c-------eeccCcccccceeeeCCC---
Q 041236 13 VLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTL-D-------MYGFGYINTFGFCFDQST--- 81 (281)
Q Consensus 13 ~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~-~-------~~g~g~~~~~~l~~d~~~--- 81 (281)
+...-+..++|-|....+..+......+.++||.|.+|..+|+-+..... . .+.+|. ++...
T Consensus 342 R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG-------~~~~~~~~ 414 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGG-------RTEHIDYT 414 (557)
T ss_pred hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeC-------CCcccccc
Confidence 34455677888777655422211235689999999999999775543211 0 122220 11100
Q ss_pred --CceEEEEEEeCC-CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCC-cCceEEEEEECCC-CeEE
Q 041236 82 --NDYKIVRLVNDD-GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRT-IFSSVILCFSLVD-DKFR 143 (281)
Q Consensus 82 --~~yKVv~~~~~~-~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~-~~~~~IlsFD~~~-e~f~ 143 (281)
..+.-+...... ....+++|+..+++|.. .+.++|. |-+...... .....+.+||.++ ++|.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred cccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 000000000000 13468999999999976 4678899 877543211 1124678999999 7998
Q ss_pred EE-eCCCCcCCCCeeEEEEeCCeEEE
Q 041236 144 VI-LLPDDVAKGAEFDLFDFGGCLGL 168 (281)
Q Consensus 144 ~i-~lP~~~~~~~~~~L~~~~g~L~~ 168 (281)
.+ ++|... ....++.++|+|.+
T Consensus 495 ~~~~m~~~r---~~~~~~~~~~~iyv 517 (557)
T PHA02713 495 LITTTESRL---SALHTILHDNTIMM 517 (557)
T ss_pred EccccCccc---ccceeEEECCEEEE
Confidence 87 566543 34678899999999
No 13
>PLN02153 epithiospecifier protein
Probab=97.36 E-value=0.05 Score=49.40 Aligned_cols=163 Identities=10% Similarity=0.046 Sum_probs=89.0
Q ss_pred EEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCcc---CCCcceeccCcccccceeeeCCCCceEEEEEEeCC-
Q 041236 18 IGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVV---GLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD- 93 (281)
Q Consensus 18 ~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~---~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~- 93 (281)
+..++|.|.+.....+......++++||.|.+|..+|+... ..+...++.. +++ + |+..+.-.+
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-------~~~---~--~iyv~GG~~~ 148 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-------SDE---N--HVYVFGGVSK 148 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-------EEC---C--EEEEECCccC
Confidence 45567766655432222123578999999999999865311 0111011100 000 0 122221100
Q ss_pred --------CCcEEEEEEcCCCCccc---------------cccccce-EEeeeccC--------CcCceEEEEEECCCCe
Q 041236 94 --------GITHFQIYSLNTNFWKT---------------GILPDRI-HDTKERFR--------TIFSSVILCFSLVDDK 141 (281)
Q Consensus 94 --------~~~~~eVys~~~~~Wr~---------------~v~~nG~-yWl~~~~~--------~~~~~~IlsFD~~~e~ 141 (281)
....+++|+..+++|+. .+.++|. |-+..... ......+.+||+++.+
T Consensus 149 ~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 149 GGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred CCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 01357899999999975 2456777 65432110 0012468999999999
Q ss_pred EEEEe----CCCCcCCCCeeEEEEeCCeEEE--EEecC-------CCCCeEEEEEEcC--CceeeEEEe
Q 041236 142 FRVIL----LPDDVAKGAEFDLFDFGGCLGL--IHCHA-------RRRAHVDIWTRNE--LNWIKIMCI 195 (281)
Q Consensus 142 f~~i~----lP~~~~~~~~~~L~~~~g~L~~--~~~~~-------~~~~~i~IWvL~~--~~W~~~~~i 195 (281)
|..++ +|... .......++++|.+ ..... .....-+||+++- ..|+++...
T Consensus 229 W~~~~~~g~~P~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 229 WTEVETTGAKPSAR---SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred EEeccccCCCCCCc---ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCC
Confidence 99885 34322 23456677888888 22110 0011238999976 889987543
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.18 E-value=0.1 Score=47.46 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=63.5
Q ss_pred eEEEEEECCCCeEEEE-eCCCCcCCCCeeEEEEeCCeEEE-EEecCCCCCeEEEEEEc--C--CceeeEEEecCCCCcCc
Q 041236 130 SVILCFSLVDDKFRVI-LLPDDVAKGAEFDLFDFGGCLGL-IHCHARRRAHVDIWTRN--E--LNWIKIMCIPRLEDVHS 203 (281)
Q Consensus 130 ~~IlsFD~~~e~f~~i-~lP~~~~~~~~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~--~--~~W~~~~~i~~~~~~~~ 203 (281)
..+.+||..+.+|..+ ++|.... ....+..++|+|.+ ...........++|..+ . ..|+.+-.++.......
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~ 245 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQ 245 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcc
Confidence 5699999999999988 4553221 23467788999998 32221122345566654 2 58998766544321000
Q ss_pred cceeeeEEEEecCCcEEEEecCCCCC--------------CCC--cEEEEEECCCCeEEEEE
Q 041236 204 SLYLAPVFFYSGAGEVLLHENDTYPS--------------HGK--DVFYLYSLEKKIFRKFK 249 (281)
Q Consensus 204 ~~~~~~~~~~~~~g~ill~~~~~~~~--------------~~~--~~l~~Yd~~t~~~~~i~ 249 (281)
...... ..+.-+|+|++.-...... ... ..+-.||+++++|+.+.
T Consensus 246 ~~~~~~-~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 246 EGLAGA-FAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred ccccEE-eeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 000111 1123456776653110000 000 12668999999998873
No 15
>PLN02193 nitrile-specifier protein
Probab=97.14 E-value=0.11 Score=49.41 Aligned_cols=166 Identities=7% Similarity=0.004 Sum_probs=91.7
Q ss_pred EEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCcc-CCCcceeccCcccccceeeeCCCCceEEEEEEeCC---
Q 041236 18 IGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVV-GLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD--- 93 (281)
Q Consensus 18 ~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~-~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~--- 93 (281)
+..+++.|.+............++++||.|.+|.++++... ..+...+... +.+ =|+..+.-.+
T Consensus 224 ~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-------~~~-----~~iYv~GG~~~~~ 291 (470)
T PLN02193 224 MVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-------ADE-----ENVYVFGGVSATA 291 (470)
T ss_pred EEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-------EEC-----CEEEEECCCCCCC
Confidence 44567776665432211124678999999999999965421 1111111110 011 1222221111
Q ss_pred CCcEEEEEEcCCCCccc---------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCC-CCcCCCCe
Q 041236 94 GITHFQIYSLNTNFWKT---------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLP-DDVAKGAE 156 (281)
Q Consensus 94 ~~~~~eVys~~~~~Wr~---------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP-~~~~~~~~ 156 (281)
....+++|+..+++|.. .+.++|. |-+.... +.....+..||+.+.+|..++.. ..+.....
T Consensus 292 ~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~-g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~ 370 (470)
T PLN02193 292 RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN-GCEVDDVHYYDPVQDKWTQVETFGVRPSERSV 370 (470)
T ss_pred CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC-CCccCceEEEECCCCEEEEeccCCCCCCCcce
Confidence 13457899999999965 2456777 7554321 11235699999999999988421 11111123
Q ss_pred eEEEEeCCeEEE--EEecCC-----CC--CeEEEEEEcC--CceeeEEEec
Q 041236 157 FDLFDFGGCLGL--IHCHAR-----RR--AHVDIWTRNE--LNWIKIMCIP 196 (281)
Q Consensus 157 ~~L~~~~g~L~~--~~~~~~-----~~--~~i~IWvL~~--~~W~~~~~i~ 196 (281)
.....++++|.+ ...... .. ..-++|+++- ..|+++-.+.
T Consensus 371 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 371 FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 456677889888 221100 01 1226899986 7899876554
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.84 E-value=0.043 Score=49.45 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=60.7
Q ss_pred cEEEEEEcCCCCc----cc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEe-CCCCcCCCCee
Q 041236 96 THFQIYSLNTNFW----KT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVIL-LPDDVAKGAEF 157 (281)
Q Consensus 96 ~~~eVys~~~~~W----r~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~-lP~~~~~~~~~ 157 (281)
..++.|++.++.| +. .+.++|. |-+...........+.+||+.+++|..++ +|.... ...
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r--~~~ 165 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR--VQP 165 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC--Ccc
Confidence 4577888888887 33 4566788 76654321112457899999999999884 664321 234
Q ss_pred EEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEe
Q 041236 158 DLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCI 195 (281)
Q Consensus 158 ~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i 195 (281)
....++++|.+..-.. .....++|+.+- ..|+++-.+
T Consensus 166 ~~~~~~~~iYv~GG~~-~~~~~~~~~yd~~~~~W~~~~~~ 204 (323)
T TIGR03548 166 VCVKLQNELYVFGGGS-NIAYTDGYKYSPKKNQWQKVADP 204 (323)
T ss_pred eEEEECCEEEEEcCCC-CccccceEEEecCCCeeEECCCC
Confidence 5567899998832211 122345677764 789876543
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.76 E-value=0.28 Score=45.20 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=42.4
Q ss_pred eEEEEEECCCCeEEEE-eCCCCcCCCCeeEEEEeCCeEEE-EEecCCCCCeEEEEEEc--C--CceeeEEEecC
Q 041236 130 SVILCFSLVDDKFRVI-LLPDDVAKGAEFDLFDFGGCLGL-IHCHARRRAHVDIWTRN--E--LNWIKIMCIPR 197 (281)
Q Consensus 130 ~~IlsFD~~~e~f~~i-~lP~~~~~~~~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~--~--~~W~~~~~i~~ 197 (281)
..+.+||..+.+|..+ ++|.... ....+...+++|.+ ......+....++|..+ . ..|+++..++.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~--~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~ 260 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGT--AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP 260 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCC--CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC
Confidence 4699999999999987 4553221 23456778999998 32221123456677543 2 78998776654
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=96.73 E-value=0.082 Score=50.53 Aligned_cols=137 Identities=11% Similarity=-0.015 Sum_probs=82.1
Q ss_pred eeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCc-ceeccCcccccceeeeCCC
Q 041236 3 ARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTL-DMYGFGYINTFGFCFDQST 81 (281)
Q Consensus 3 ~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~-~~~g~g~~~~~~l~~d~~~ 81 (281)
|..++-...++...-...++|-|.+..+.. ....+-.++|.+.+|..+|+.+..... .... ++.
T Consensus 299 W~~~~~m~~~r~~~~~v~~~~~iYviGG~~---~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~----------~~g-- 363 (480)
T PHA02790 299 WIPIPPMNSPRLYASGVPANNKLYVVGGLP---NPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS----------INN-- 363 (480)
T ss_pred EEECCCCCchhhcceEEEECCEEEEECCcC---CCCceEEEECCCCeEEECCCCCCCCcccEEEE----------ECC--
Confidence 445543333333334456888777665421 124577899999999999876543211 0111 111
Q ss_pred CceEEEEEEeCC-CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEe-
Q 041236 82 NDYKIVRLVNDD-GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVIL- 146 (281)
Q Consensus 82 ~~yKVv~~~~~~-~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~- 146 (281)
||..+...+ ....+|+|+..+++|.. .+.++|. |-+.. ..-+||.++++|..++
T Consensus 364 ---~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG--------~~e~ydp~~~~W~~~~~ 432 (480)
T PHA02790 364 ---VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR--------NAEFYCESSNTWTLIDD 432 (480)
T ss_pred ---EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC--------ceEEecCCCCcEeEcCC
Confidence 111111111 12357899999999977 3467777 76532 2567999999999884
Q ss_pred CCCCcCCCCeeEEEEeCCeEEE
Q 041236 147 LPDDVAKGAEFDLFDFGGCLGL 168 (281)
Q Consensus 147 lP~~~~~~~~~~L~~~~g~L~~ 168 (281)
+|... ....++.++|+|++
T Consensus 433 m~~~r---~~~~~~v~~~~IYv 451 (480)
T PHA02790 433 PIYPR---DNPELIIVDNKLLL 451 (480)
T ss_pred CCCCc---cccEEEEECCEEEE
Confidence 33322 34578899999998
No 19
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.22 E-value=0.05 Score=49.95 Aligned_cols=120 Identities=12% Similarity=0.168 Sum_probs=72.5
Q ss_pred eEEEEEECCCCeEEEEeCCCC-cCCCCeeEEEEe-CCeEEE--EEec-------CCCCCeEEEEEEcC-------Cceee
Q 041236 130 SVILCFSLVDDKFRVILLPDD-VAKGAEFDLFDF-GGCLGL--IHCH-------ARRRAHVDIWTRNE-------LNWIK 191 (281)
Q Consensus 130 ~~IlsFD~~~e~f~~i~lP~~-~~~~~~~~L~~~-~g~L~~--~~~~-------~~~~~~i~IWvL~~-------~~W~~ 191 (281)
.-+.+||+++=+|..+..|.. +.....+.+.+. .|.+.+ ..+. ..+..+-+.|.|+- -.|++
T Consensus 207 NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~k 286 (521)
T KOG1230|consen 207 NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTK 286 (521)
T ss_pred eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEee
Confidence 458999999999999966542 222234566666 677766 2211 12567889999975 46888
Q ss_pred EEEecCCCCcCccceeeeEEEEecCCcEEEEe---c--CC---CCC-CCCcEEEEEECCCCeEEEEEEecCC
Q 041236 192 IMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHE---N--DT---YPS-HGKDVFYLYSLEKKIFRKFKIEGME 254 (281)
Q Consensus 192 ~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~---~--~~---~~~-~~~~~l~~Yd~~t~~~~~i~~~~~~ 254 (281)
+-.+.+....+.+ .. ++++.+++-++.- + .. +.+ .... |+.||+..++|.+-++++..
T Consensus 287 vkp~g~kPspRsg---fs-v~va~n~kal~FGGV~D~eeeeEsl~g~F~ND-Ly~fdlt~nrW~~~qlq~~~ 353 (521)
T KOG1230|consen 287 VKPSGVKPSPRSG---FS-VAVAKNHKALFFGGVCDLEEEEESLSGEFFND-LYFFDLTRNRWSEGQLQGKK 353 (521)
T ss_pred ccCCCCCCCCCCc---ee-EEEecCCceEEecceecccccchhhhhhhhhh-hhheecccchhhHhhhccCC
Confidence 7766665542211 11 4445555433221 0 00 000 2355 99999999999998877643
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.15 E-value=1.1 Score=41.39 Aligned_cols=143 Identities=17% Similarity=0.082 Sum_probs=77.0
Q ss_pred cEEEEEEcCCCCccc-------------cccccce-EEeeeccCC-c--CceEEEEEECCCCeEEEE-eCCCCcC---C-
Q 041236 96 THFQIYSLNTNFWKT-------------GILPDRI-HDTKERFRT-I--FSSVILCFSLVDDKFRVI-LLPDDVA---K- 153 (281)
Q Consensus 96 ~~~eVys~~~~~Wr~-------------~v~~nG~-yWl~~~~~~-~--~~~~IlsFD~~~e~f~~i-~lP~~~~---~- 153 (281)
..+++|+..++.|+. .+.+++. |.+...... . .......+|.++.+|..+ ++|.... .
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 468999999999976 3455777 877653211 1 123345667788999877 4554321 1
Q ss_pred C-CeeEEEEeCCeEEE-EEecCCC------------------CCeEEEEEEcCCceeeEEEecCCCCcCccceeeeEEEE
Q 041236 154 G-AEFDLFDFGGCLGL-IHCHARR------------------RAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFY 213 (281)
Q Consensus 154 ~-~~~~L~~~~g~L~~-~~~~~~~------------------~~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~ 213 (281)
. .......++|+|.+ ....... ....+++-.+...|++.-.++.... ... ++
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~------~~~--av 340 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA------YGV--SV 340 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc------ceE--EE
Confidence 0 11224567899888 2211000 0124455555588987654443221 122 23
Q ss_pred ecCCcEEEEecCCC-CCCCCcEEEEEECCCCeEEE
Q 041236 214 SGAGEVLLHENDTY-PSHGKDVFYLYSLEKKIFRK 247 (281)
Q Consensus 214 ~~~g~ill~~~~~~-~~~~~~~l~~Yd~~t~~~~~ 247 (281)
.-+|+|++.-...- ..... .+..|+++++++..
T Consensus 341 ~~~~~iyv~GG~~~~~~~~~-~v~~~~~~~~~~~~ 374 (376)
T PRK14131 341 SWNNGVLLIGGETAGGKAVS-DVTLLSWDGKKLTV 374 (376)
T ss_pred EeCCEEEEEcCCCCCCcEee-eEEEEEEcCCEEEE
Confidence 34566766642100 00112 38888888777654
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.56 E-value=0.73 Score=41.43 Aligned_cols=130 Identities=12% Similarity=0.007 Sum_probs=72.1
Q ss_pred cccccce-EEeeeccCCcCceEEEEEECCCCeEE--EEeCCCCcCCCCeeEEEEeCCeEEE-EEecCCCCCeEEEEEEcC
Q 041236 111 GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFR--VILLPDDVAKGAEFDLFDFGGCLGL-IHCHARRRAHVDIWTRNE 186 (281)
Q Consensus 111 ~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~--~i~lP~~~~~~~~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~~ 186 (281)
.+.+++. |.+...........+.+||+.+++|. ...+|+.+..........++|+|.+ ..... ....-++|+++-
T Consensus 68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~ 146 (323)
T TIGR03548 68 SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNL 146 (323)
T ss_pred EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC-CccCceEEEEcC
Confidence 4566777 77765332222357889999998872 1233332221123566778999988 32211 122335777764
Q ss_pred --CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEE
Q 041236 187 --LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKI 250 (281)
Q Consensus 187 --~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~ 250 (281)
..|+++-.++... .... .++..+++|++.-...- +.... +..||+++++|+.+..
T Consensus 147 ~~~~W~~~~~~p~~~------r~~~-~~~~~~~~iYv~GG~~~-~~~~~-~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 147 ETQEWFELPDFPGEP------RVQP-VCVKLQNELYVFGGGSN-IAYTD-GYKYSPKKNQWQKVAD 203 (323)
T ss_pred CCCCeeECCCCCCCC------CCcc-eEEEECCEEEEEcCCCC-ccccc-eEEEecCCCeeEECCC
Confidence 8899865443211 1122 22334567766641100 01133 7899999999998854
No 22
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.31 E-value=2.1 Score=38.71 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=59.1
Q ss_pred cEEEEEEcCCCCccc-------------cccccce-EEeeeccCC-cCceEEEEE--ECCCCeEEEE-eCCCCcC---CC
Q 041236 96 THFQIYSLNTNFWKT-------------GILPDRI-HDTKERFRT-IFSSVILCF--SLVDDKFRVI-LLPDDVA---KG 154 (281)
Q Consensus 96 ~~~eVys~~~~~Wr~-------------~v~~nG~-yWl~~~~~~-~~~~~IlsF--D~~~e~f~~i-~lP~~~~---~~ 154 (281)
..+++|+..+++|+. .+.++|. |-+...... .....+..| |.++.+|..+ ++|.... ..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 468999999999987 2455777 765442211 111234344 4566699877 4554321 11
Q ss_pred -CeeEEEEeCCeEEE-EEecCCC------------------CCeEEEEEEcCCceeeEEEecC
Q 041236 155 -AEFDLFDFGGCLGL-IHCHARR------------------RAHVDIWTRNELNWIKIMCIPR 197 (281)
Q Consensus 155 -~~~~L~~~~g~L~~-~~~~~~~------------------~~~i~IWvL~~~~W~~~~~i~~ 197 (281)
.......++|+|.+ .-..... ...+++|-.+...|++...++.
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence 12235678999988 2221000 1257788877788998766544
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=94.14 E-value=0.54 Score=41.03 Aligned_cols=97 Identities=11% Similarity=0.173 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCCccc---------------cccccce-EEeeeccCCc---------CceEEEEEECCCCeEEEEe-CCC
Q 041236 96 THFQIYSLNTNFWKT---------------GILPDRI-HDTKERFRTI---------FSSVILCFSLVDDKFRVIL-LPD 149 (281)
Q Consensus 96 ~~~eVys~~~~~Wr~---------------~v~~nG~-yWl~~~~~~~---------~~~~IlsFD~~~e~f~~i~-lP~ 149 (281)
...++++..|..||. ++.++|. |-+....+.. --..|++||+.++.|..-+ -|.
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~ 236 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM 236 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc
Confidence 345666666666666 6777888 8777654321 1257999999999996541 111
Q ss_pred CcCCCCeeEEEEeCCeEEEE-EecC-CCCCeEEEEEEcC--CceeeE
Q 041236 150 DVAKGAEFDLFDFGGCLGLI-HCHA-RRRAHVDIWTRNE--LNWIKI 192 (281)
Q Consensus 150 ~~~~~~~~~L~~~~g~L~~~-~~~~-~~~~~i~IWvL~~--~~W~~~ 192 (281)
.+...+.....+++|.+.+. .... -+..-=++|..+- ..|+++
T Consensus 237 ~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I 283 (392)
T KOG4693|consen 237 KPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVI 283 (392)
T ss_pred CCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheee
Confidence 11112445677889999982 2211 1234557888876 779874
No 24
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.68 E-value=0.78 Score=40.32 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=84.5
Q ss_pred eeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCC
Q 041236 3 ARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTN 82 (281)
Q Consensus 3 ~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~ 82 (281)
.+-++-|.+....-|+..-||=|-.... ..+.+..-||.+..-..+|+|...... .-..+ -||..
T Consensus 180 i~vfpaPqG~gpyGi~atpdGsvwyasl-----agnaiaridp~~~~aev~p~P~~~~~g-sRriw--------sdpig- 244 (353)
T COG4257 180 ISVFPAPQGGGPYGICATPDGSVWYASL-----AGNAIARIDPFAGHAEVVPQPNALKAG-SRRIW--------SDPIG- 244 (353)
T ss_pred eeeeccCCCCCCcceEECCCCcEEEEec-----cccceEEcccccCCcceecCCCccccc-ccccc--------cCccC-
Confidence 4456777766666888888998887763 456788999999988888887752211 11122 34321
Q ss_pred ceEEEEEEeCCCCcEEEEEEcCCCCccc-----------cccccce--EEeeeccCCcCceEEEEEECCCCeEEEEeCCC
Q 041236 83 DYKIVRLVNDDGITHFQIYSLNTNFWKT-----------GILPDRI--HDTKERFRTIFSSVILCFSLVDDKFRVILLPD 149 (281)
Q Consensus 83 ~yKVv~~~~~~~~~~~eVys~~~~~Wr~-----------~v~~nG~--yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~ 149 (281)
-+++. +.+.-.++-|.-.+.+|++ .++++.. -|+..- ....|..||.++++|+++++|.
T Consensus 245 ---~~wit-twg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea----~agai~rfdpeta~ftv~p~pr 316 (353)
T COG4257 245 ---RAWIT-TWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA----DAGAIGRFDPETARFTVLPIPR 316 (353)
T ss_pred ---cEEEe-ccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecc----ccCceeecCcccceEEEecCCC
Confidence 12222 1234456666666667776 5677766 887653 3578999999999999999996
Q ss_pred Cc
Q 041236 150 DV 151 (281)
Q Consensus 150 ~~ 151 (281)
..
T Consensus 317 ~n 318 (353)
T COG4257 317 PN 318 (353)
T ss_pred CC
Confidence 54
No 25
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.27 E-value=5.5 Score=35.18 Aligned_cols=217 Identities=18% Similarity=0.194 Sum_probs=119.7
Q ss_pred ecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccC-----cccc---cceee
Q 041236 6 LNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFG-----YINT---FGFCF 77 (281)
Q Consensus 6 ~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g-----~~~~---~~l~~ 77 (281)
++.|.+...+.+.-+-+|-+-+... ..+.+=-.||+|++..+.|-+.-..+. .+..| .+.- ...-+
T Consensus 56 fpvp~G~ap~dvapapdG~VWft~q-----g~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~ 129 (353)
T COG4257 56 FPVPNGSAPFDVAPAPDGAVWFTAQ-----GTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRL 129 (353)
T ss_pred eccCCCCCccccccCCCCceEEecC-----ccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEe
Confidence 4555555444666677887777653 456677789999999999876643321 01111 0000 11124
Q ss_pred eCCCCceEEEEEEeC--CCCcEEEEEEcCCCCccc----------------------------c--ccccceEEeeeccC
Q 041236 78 DQSTNDYKIVRLVND--DGITHFQIYSLNTNFWKT----------------------------G--ILPDRIHDTKERFR 125 (281)
Q Consensus 78 d~~~~~yKVv~~~~~--~~~~~~eVys~~~~~Wr~----------------------------~--v~~nG~yWl~~~~~ 125 (281)
|+.+.+++=+-+..+ +..++--||+-..+-|-. + +.-||.-|.+.-
T Consensus 130 dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasl-- 207 (353)
T COG4257 130 DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASL-- 207 (353)
T ss_pred cCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEec--
Confidence 665544443333222 246667777766666733 3 344666444431
Q ss_pred CcCceEEEEEECCCCeEEEEeCCCCcCCCCeeEEE-EeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcC
Q 041236 126 TIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLF-DFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVH 202 (281)
Q Consensus 126 ~~~~~~IlsFD~~~e~f~~i~lP~~~~~~~~~~L~-~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~ 202 (281)
...+|...|.-+..-.+++.|....... ..+. ...|++...... ...+ -..+- .+|.. +.++-....+
T Consensus 208 --agnaiaridp~~~~aev~p~P~~~~~gs-Rriwsdpig~~wittwg---~g~l--~rfdPs~~sW~e-ypLPgs~arp 278 (353)
T COG4257 208 --AGNAIARIDPFAGHAEVVPQPNALKAGS-RRIWSDPIGRAWITTWG---TGSL--HRFDPSVTSWIE-YPLPGSKARP 278 (353)
T ss_pred --cccceEEcccccCCcceecCCCcccccc-cccccCccCcEEEeccC---Ccee--eEeCccccccee-eeCCCCCCCc
Confidence 3468999999988888888888754321 1221 122444331110 0000 01111 45654 5555444321
Q ss_pred ccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEEe
Q 041236 203 SSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIE 251 (281)
Q Consensus 203 ~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~~ 251 (281)
. . +.+++.|++.+..- ..+ .+.-+|++|.+++.+.++
T Consensus 279 ----y-s-~rVD~~grVW~sea-----~ag-ai~rfdpeta~ftv~p~p 315 (353)
T COG4257 279 ----Y-S-MRVDRHGRVWLSEA-----DAG-AIGRFDPETARFTVLPIP 315 (353)
T ss_pred ----c-e-eeeccCCcEEeecc-----ccC-ceeecCcccceEEEecCC
Confidence 1 1 55678888887651 344 499999999999998664
No 26
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=91.88 E-value=1.8 Score=33.51 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=52.3
Q ss_pred EEEEEECCCC--eEEEEeCCCCcCC-----------CCeeEEEEeCCeEEEEEec--C-----CCCCeEEEEEEcC----
Q 041236 131 VILCFSLVDD--KFRVILLPDDVAK-----------GAEFDLFDFGGCLGLIHCH--A-----RRRAHVDIWTRNE---- 186 (281)
Q Consensus 131 ~IlsFD~~~e--~f~~i~lP~~~~~-----------~~~~~L~~~~g~L~~~~~~--~-----~~~~~i~IWvL~~---- 186 (281)
.||..|+-++ .++.|+||..... .....++..+|+|-++... . ....++.+|.|..
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5899998876 8889999976421 1346788889999773221 1 2467899999976
Q ss_pred -CceeeEEEecCCCCc
Q 041236 187 -LNWIKIMCIPRLEDV 201 (281)
Q Consensus 187 -~~W~~~~~i~~~~~~ 201 (281)
..|.+.++++...+.
T Consensus 87 ~~~W~~d~~v~~~diw 102 (131)
T PF07762_consen 87 SWEWKKDCEVDLSDIW 102 (131)
T ss_pred CCCEEEeEEEEhhhcc
Confidence 679999999887763
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=91.68 E-value=5.3 Score=35.07 Aligned_cols=202 Identities=13% Similarity=0.143 Sum_probs=105.4
Q ss_pred cceEEEEcCcCccceecCCCccC----CCcceeccC-cccccceeeeCCCCceEEEEEEe--CC--C-CcEEEEEEcCCC
Q 041236 37 EADLVLWNPWTGRYKTVPISVVG----LTLDMYGFG-YINTFGFCFDQSTNDYKIVRLVN--DD--G-ITHFQIYSLNTN 106 (281)
Q Consensus 37 ~~~~~V~NP~Tr~~~~LP~~~~~----~~~~~~g~g-~~~~~~l~~d~~~~~yKVv~~~~--~~--~-~~~~eVys~~~~ 106 (281)
.-.+.|.|..+-.|.++|+.-.. .+....-+- |..++ .+|+. |+. ++- .+ + +-...-|+.+++
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtv-V~y~d-----~~y-vWGGRND~egaCN~Ly~fDp~t~ 115 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTV-VEYQD-----KAY-VWGGRNDDEGACNLLYEFDPETN 115 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceE-EEEcc-----eEE-EEcCccCcccccceeeeeccccc
Confidence 45789999999999999984221 111111111 11111 11221 111 111 11 2 445667888999
Q ss_pred Cccc---------------cccccce-EEeeeccCC--cCceEEEEEECCCCeEEEEe---CCCCcCCCCeeEEEEeCCe
Q 041236 107 FWKT---------------GILPDRI-HDTKERFRT--IFSSVILCFSLVDDKFRVIL---LPDDVAKGAEFDLFDFGGC 165 (281)
Q Consensus 107 ~Wr~---------------~v~~nG~-yWl~~~~~~--~~~~~IlsFD~~~e~f~~i~---lP~~~~~~~~~~L~~~~g~ 165 (281)
.|+. ++.++.. |-+..-... ....-+-+||+++-+|+.|. .|+...+ ...-+.++|.
T Consensus 116 ~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD--FH~a~~~~~~ 193 (392)
T KOG4693|consen 116 VWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD--FHTASVIDGM 193 (392)
T ss_pred cccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh--hhhhhhccce
Confidence 9977 3344444 554432211 12456899999999999983 4443211 1223445566
Q ss_pred EEEEE--ecC-------CCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEec--CCCCCCCC
Q 041236 166 LGLIH--CHA-------RRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHEN--DTYPSHGK 232 (281)
Q Consensus 166 L~~~~--~~~-------~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~--~~~~~~~~ 232 (281)
+.+.. .++ ++...=+|-+|+- +.|.+-..-+... .++.-+. . .--||++.+.-. ..+...-.
T Consensus 194 MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P---~GRRSHS-~-fvYng~~Y~FGGYng~ln~Hfn 268 (392)
T KOG4693|consen 194 MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP---GGRRSHS-T-FVYNGKMYMFGGYNGTLNVHFN 268 (392)
T ss_pred EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC---Ccccccc-e-EEEcceEEEecccchhhhhhhc
Confidence 66621 111 1223344555554 8898853222221 1222222 1 124666655431 01111335
Q ss_pred cEEEEEECCCCeEEEEEEecC
Q 041236 233 DVFYLYSLEKKIFRKFKIEGM 253 (281)
Q Consensus 233 ~~l~~Yd~~t~~~~~i~~~~~ 253 (281)
+ |+.+|++|+.|..|...|+
T Consensus 269 d-Ly~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 269 D-LYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred c-eeecccccchheeeeccCC
Confidence 5 9999999999999988876
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=91.43 E-value=6.8 Score=37.55 Aligned_cols=151 Identities=10% Similarity=0.042 Sum_probs=88.7
Q ss_pred EEEEEEcCCCCccc---------------cccccce-EEeeeccC-CcCceEEEEEECCCCeEEEEeCCCC-cCCCCeeE
Q 041236 97 HFQIYSLNTNFWKT---------------GILPDRI-HDTKERFR-TIFSSVILCFSLVDDKFRVILLPDD-VAKGAEFD 158 (281)
Q Consensus 97 ~~eVys~~~~~Wr~---------------~v~~nG~-yWl~~~~~-~~~~~~IlsFD~~~e~f~~i~lP~~-~~~~~~~~ 158 (281)
.+.++.+.+..|.. .+.++.. |-+..... ......|-+||+.+.+|..+..-.. +.......
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 46777777777755 2344444 44433221 1123579999999999988733222 11123456
Q ss_pred EEEeCCeEEE-EEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecC-CCCCCCCcE
Q 041236 159 LFDFGGCLGL-IHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHEND-TYPSHGKDV 234 (281)
Q Consensus 159 L~~~~g~L~~-~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~-~~~~~~~~~ 234 (281)
+...+.+|.+ ..........-++|+++= ..|.+.......... +..+. +.+.++ ++++.-.. .......+
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p---R~gH~-~~~~~~-~~~v~gG~~~~~~~l~D- 242 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP---RYGHA-MVVVGN-KLLVFGGGDDGDVYLND- 242 (482)
T ss_pred EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC---CCCce-EEEECC-eEEEEeccccCCceecc-
Confidence 7777888888 222221236788999976 779998776665542 23443 444444 44444311 00012345
Q ss_pred EEEEECCCCeEEEEEEecC
Q 041236 235 FYLYSLEKKIFRKFKIEGM 253 (281)
Q Consensus 235 l~~Yd~~t~~~~~i~~~~~ 253 (281)
++.+|+.+.+|+.+...|.
T Consensus 243 ~~~ldl~~~~W~~~~~~g~ 261 (482)
T KOG0379|consen 243 VHILDLSTWEWKLLPTGGD 261 (482)
T ss_pred eEeeecccceeeeccccCC
Confidence 8999999999997755443
No 29
>PF13964 Kelch_6: Kelch motif
Probab=88.79 E-value=1.5 Score=27.60 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=27.5
Q ss_pred EEeecCeEeeeeeecc-ccCcceEEEEcCcCccceecCCCc
Q 041236 18 IGCCNGLLCIVVQIHE-HAGEADLVLWNPWTGRYKTVPISV 57 (281)
Q Consensus 18 ~~scnGLlcl~~~~~~-~~~~~~~~V~NP~Tr~~~~LP~~~ 57 (281)
..+++|-|.+..+..+ ......+.++||.|++|.+||+-+
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 3456666655543332 223578999999999999998654
No 30
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=88.56 E-value=20 Score=33.10 Aligned_cols=87 Identities=6% Similarity=0.120 Sum_probs=50.8
Q ss_pred eeEEEEeCCeEEEEEe--cC------------CCCCeEEEEEEcC--CceeeEEEecCCCC-cCccceeeeEEEE---ec
Q 041236 156 EFDLFDFGGCLGLIHC--HA------------RRRAHVDIWTRNE--LNWIKIMCIPRLED-VHSSLYLAPVFFY---SG 215 (281)
Q Consensus 156 ~~~L~~~~g~L~~~~~--~~------------~~~~~i~IWvL~~--~~W~~~~~i~~~~~-~~~~~~~~~~~~~---~~ 215 (281)
...|+|..|.|.++.. .. .....++|+.++. ..|.++-+++-... .+....+.. .+. .-
T Consensus 249 ~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv-~a~e~pG~ 327 (373)
T PLN03215 249 DRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSV-LAHEFYGC 327 (373)
T ss_pred ceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEE-ecCCCCCc
Confidence 4679999999988322 11 0135789999987 88999888754432 111111111 100 11
Q ss_pred CCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEE
Q 041236 216 AGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKI 250 (281)
Q Consensus 216 ~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~ 250 (281)
.++-++.. .+.. ...||++.++...+..
T Consensus 328 k~NcIYFt------dd~~-~~v~~~~dg~~~~~~~ 355 (373)
T PLN03215 328 LPNSIYFT------EDTM-PKVFKLDNGNGSSIET 355 (373)
T ss_pred cCCEEEEE------CCCc-ceEEECCCCCccceEe
Confidence 23434444 3344 7799999999777633
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=86.70 E-value=19 Score=34.54 Aligned_cols=152 Identities=15% Similarity=0.089 Sum_probs=86.6
Q ss_pred CcEEEEEEcCCCCccc--------------cccccce--EEeeeccCCc-CceEEEEEECCCCeEEEEeCCCCcCC-CCe
Q 041236 95 ITHFQIYSLNTNFWKT--------------GILPDRI--HDTKERFRTI-FSSVILCFSLVDDKFRVILLPDDVAK-GAE 156 (281)
Q Consensus 95 ~~~~eVys~~~~~Wr~--------------~v~~nG~--yWl~~~~~~~-~~~~IlsFD~~~e~f~~i~lP~~~~~-~~~ 156 (281)
..++..|+..|+.|+. .+.+-|. |-........ ....+-.+|+++.+|.++........ ...
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g 217 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG 217 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC
Confidence 3478889999999977 2222233 2221111111 24679999999999998854433221 134
Q ss_pred eEEEEeCCeEEE-EEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCC--CC
Q 041236 157 FDLFDFGGCLGL-IHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPS--HG 231 (281)
Q Consensus 157 ~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~--~~ 231 (281)
..+...++++++ ......+..-=++|.|+= ..|.++- .....+..+..+. ..+..+ .+++......++ ..
T Consensus 218 H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~---~~g~~p~~R~~h~-~~~~~~-~~~l~gG~~~~~~~~l 292 (482)
T KOG0379|consen 218 HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP---TGGDLPSPRSGHS-LTVSGD-HLLLFGGGTDPKQEPL 292 (482)
T ss_pred ceEEEECCeEEEEeccccCCceecceEeeecccceeeecc---ccCCCCCCcceee-eEEECC-EEEEEcCCcccccccc
Confidence 567888888888 222112456678899876 5676432 2222222334454 433333 344443221110 13
Q ss_pred CcEEEEEECCCCeEEEEEEec
Q 041236 232 KDVFYLYSLEKKIFRKFKIEG 252 (281)
Q Consensus 232 ~~~l~~Yd~~t~~~~~i~~~~ 252 (281)
.+ ++.+|++++.|..+...+
T Consensus 293 ~~-~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 293 GD-LYGLDLETLVWSKVESVG 312 (482)
T ss_pred cc-cccccccccceeeeeccc
Confidence 44 889999999999986655
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=85.42 E-value=17 Score=33.91 Aligned_cols=139 Identities=11% Similarity=0.120 Sum_probs=78.0
Q ss_pred EEEEEECCCCeEEEEeCCCCcCCC-CeeEEEEeCCeEEEE--Eec-CC---CCCeEEEEEEcC--CceeeEEEecCCCCc
Q 041236 131 VILCFSLVDDKFRVILLPDDVAKG-AEFDLFDFGGCLGLI--HCH-AR---RRAHVDIWTRNE--LNWIKIMCIPRLEDV 201 (281)
Q Consensus 131 ~IlsFD~~~e~f~~i~lP~~~~~~-~~~~L~~~~g~L~~~--~~~-~~---~~~~i~IWvL~~--~~W~~~~~i~~~~~~ 201 (281)
-+.++|+.+..|+.+..|..+... .+...+.-.|.|.+. .+. ++ --.--++|+++= ..|.++-.=.-...+
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R 178 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR 178 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence 388999999999999777654332 334444444777772 221 11 124568999976 789986432211111
Q ss_pred CccceeeeEEEEecCCcEEEEe-cC---CCCCCCCcEEEEEECCCCeEEEEEEecCCCCC--ceEEEEe-ecCcccCCCC
Q 041236 202 HSSLYLAPVFFYSGAGEVLLHE-ND---TYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFP--FHIHMAY-TPSLTLLTRC 274 (281)
Q Consensus 202 ~~~~~~~~~~~~~~~g~ill~~-~~---~~~~~~~~~l~~Yd~~t~~~~~i~~~~~~~~~--~~~~~~Y-~eSLv~~~~~ 274 (281)
. -.+ +.+++.--||+-- ++ .|+ ..++ |+++|++|=+|.++...|..--+ .++...+ ..+++-.+++
T Consensus 179 S---GHR--MvawK~~lilFGGFhd~nr~y~-YyND-vy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 179 S---GHR--MVAWKRQLILFGGFHDSNRDYI-YYND-VYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred c---cce--eEEeeeeEEEEcceecCCCceE-Eeee-eEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcch
Confidence 1 122 2234443233221 00 011 2355 99999999999999887742111 4455666 6666666555
Q ss_pred CC
Q 041236 275 RE 276 (281)
Q Consensus 275 ~~ 276 (281)
-+
T Consensus 252 sK 253 (521)
T KOG1230|consen 252 SK 253 (521)
T ss_pred hH
Confidence 33
No 33
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=84.83 E-value=26 Score=30.54 Aligned_cols=122 Identities=13% Similarity=0.127 Sum_probs=68.3
Q ss_pred cccccce-EEeeeccCCcCceEEEEEECCCCeEE-EEeCCCCcCCC---------CeeEEEEeCCeEEE-EEecCCCCCe
Q 041236 111 GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFR-VILLPDDVAKG---------AEFDLFDFGGCLGL-IHCHARRRAH 178 (281)
Q Consensus 111 ~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~-~i~lP~~~~~~---------~~~~L~~~~g~L~~-~~~~~~~~~~ 178 (281)
.|..||+ |.-.. ....|+.||+.+++.. ...||...... .+..|++=+.-|.+ +... .....
T Consensus 74 ~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~-~~~g~ 147 (250)
T PF02191_consen 74 HVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE-DNNGN 147 (250)
T ss_pred eEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC-CCCCc
Confidence 5778999 88665 4578999999999987 88998754221 33556666666666 3322 12335
Q ss_pred EEEEEEcC------CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEEe
Q 041236 179 VDIWTRNE------LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIE 251 (281)
Q Consensus 179 i~IWvL~~------~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~~ 251 (281)
|.|=.|+. +.|.-.+ +-... +. .| .-.| +|...++.-. ...+..++||+.+++-+.+.+.
T Consensus 148 ivvskld~~tL~v~~tw~T~~--~k~~~-~n--aF------mvCG-vLY~~~s~~~-~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 148 IVVSKLDPETLSVEQTWNTSY--PKRSA-GN--AF------MVCG-VLYATDSYDT-RDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred EEEEeeCcccCceEEEEEecc--Cchhh-cc--ee------eEee-EEEEEEECCC-CCcEEEEEEECCCCceeceeee
Confidence 77777765 4454321 11111 10 11 1122 3333322110 1122478888888888877665
No 34
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=80.02 E-value=3.7 Score=25.53 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=19.0
Q ss_pred cCeEeeeeeeccc-cCcceEEEEcCcCccceecCCCc
Q 041236 22 NGLLCIVVQIHEH-AGEADLVLWNPWTGRYKTVPISV 57 (281)
Q Consensus 22 nGLlcl~~~~~~~-~~~~~~~V~NP~Tr~~~~LP~~~ 57 (281)
+|-+++....... ...+.++++|+.|++|.+||+.|
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 4555554433322 24568899999999999996654
No 35
>smart00284 OLF Olfactomedin-like domains.
Probab=78.88 E-value=44 Score=29.21 Aligned_cols=127 Identities=18% Similarity=0.159 Sum_probs=72.0
Q ss_pred Cccc--cccccce-EEeeeccCCcCceEEEEEECCCCeEE-EEeCCCCc-CC--------CCeeEEEEeCCeEEEEEecC
Q 041236 107 FWKT--GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFR-VILLPDDV-AK--------GAEFDLFDFGGCLGLIHCHA 173 (281)
Q Consensus 107 ~Wr~--~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~-~i~lP~~~-~~--------~~~~~L~~~~g~L~~~~~~~ 173 (281)
.|.. .|..||+ |.-.. ....|+.||+.+++.. .-.||... .. ..+..|++=+.-|.+.....
T Consensus 73 ~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~ 147 (255)
T smart00284 73 AGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATE 147 (255)
T ss_pred ccccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEecc
Confidence 4554 6888999 88554 3467999999999885 44677531 10 13467777776676622221
Q ss_pred CCCCeEEEEEEcC------CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEE
Q 041236 174 RRRAHVDIWTRNE------LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRK 247 (281)
Q Consensus 174 ~~~~~i~IWvL~~------~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~ 247 (281)
.....|.|=.|+. +.|.-.+ +-... +..+.+ .| +|...++...+..+ ..++||..|++-+.
T Consensus 148 ~~~g~ivvSkLnp~tL~ve~tW~T~~--~k~sa-~naFmv--------CG-vLY~~~s~~~~~~~-I~yayDt~t~~~~~ 214 (255)
T smart00284 148 QNAGKIVISKLNPATLTIENTWITTY--NKRSA-SNAFMI--------CG-ILYVTRSLGSKGEK-VFYAYDTNTGKEGH 214 (255)
T ss_pred CCCCCEEEEeeCcccceEEEEEEcCC--Ccccc-cccEEE--------ee-EEEEEccCCCCCcE-EEEEEECCCCccce
Confidence 1357788888876 4565522 11111 111111 22 33333221111223 58899999988777
Q ss_pred EEEe
Q 041236 248 FKIE 251 (281)
Q Consensus 248 i~~~ 251 (281)
+.++
T Consensus 215 ~~i~ 218 (255)
T smart00284 215 LDIP 218 (255)
T ss_pred eeee
Confidence 7665
No 36
>PF13964 Kelch_6: Kelch motif
Probab=78.59 E-value=3.3 Score=25.92 Aligned_cols=34 Identities=3% Similarity=-0.055 Sum_probs=23.4
Q ss_pred ccccce-EEeeeccC-CcCceEEEEEECCCCeEEEE
Q 041236 112 ILPDRI-HDTKERFR-TIFSSVILCFSLVDDKFRVI 145 (281)
Q Consensus 112 v~~nG~-yWl~~~~~-~~~~~~IlsFD~~~e~f~~i 145 (281)
+.++|. |-+..... ......+..||+++++|+.+
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQL 43 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEEC
Confidence 455666 65554332 22357799999999999988
No 37
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=72.76 E-value=33 Score=32.16 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=73.1
Q ss_pred cCeEeeeeeeccccCcceEEEEcCcCccceecCCCccC---CCc---ceeccCcccccceeeeCCCCceEEEEEEeCCCC
Q 041236 22 NGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVG---LTL---DMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGI 95 (281)
Q Consensus 22 nGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~---~~~---~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~~~ 95 (281)
.-||+|.-.-+.+ ..-.++|+|..|++..+|...... .|. ..+.-| |-=.+++||++-.... .
T Consensus 238 G~LILLrI~PY~E-~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgG--------YyLqtGe~K~Fd~~~~--~ 306 (448)
T PF12458_consen 238 GNLILLRIRPYRE-EEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGG--------YYLQTGEYKTFDTDMD--G 306 (448)
T ss_pred CcEEEEEeccCCC-cceeEEEEecccceEEEecchhhhhhcCCccCceEccCc--------eEeccCCceeecccCC--C
Confidence 3488877532211 123899999999999998654332 222 144456 4446778887654221 1
Q ss_pred cEEEEEEcCCCCccccccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCCCCcCCCCeeEEEEe-CCeEEEEEe--
Q 041236 96 THFQIYSLNTNFWKTGILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDF-GGCLGLIHC-- 171 (281)
Q Consensus 96 ~~~eVys~~~~~Wr~~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~~~~~~~~~~L~~~-~g~L~~~~~-- 171 (281)
++++ |.-..-||- +-..-.....+...++++|+.+.+. .-|-..+ ..+.+ +|.|++...
T Consensus 307 l~F~---------r~vrSPNGEDvLYvF~~~~~g~~~Ll~YN~I~k~v---~tPi~ch-----G~alf~DG~l~~fra~~ 369 (448)
T PF12458_consen 307 LEFE---------RKVRSPNGEDVLYVFYAREEGRYLLLPYNLIRKEV---ATPIICH-----GYALFEDGRLVYFRAEG 369 (448)
T ss_pred ceEE---------EEecCCCCceEEEEEEECCCCcEEEEechhhhhhh---cCCeecc-----ceeEecCCEEEEEecCC
Confidence 1111 001234555 3322222223567899999887653 2333221 23445 489988333
Q ss_pred -cCCCCCeEEEEEE
Q 041236 172 -HARRRAHVDIWTR 184 (281)
Q Consensus 172 -~~~~~~~i~IWvL 184 (281)
+++.-..|.||..
T Consensus 370 ~EptrvHp~QiWqT 383 (448)
T PF12458_consen 370 DEPTRVHPMQIWQT 383 (448)
T ss_pred CCcceeccceeecC
Confidence 2334567888874
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=72.60 E-value=10 Score=23.10 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=27.5
Q ss_pred EEEeecCeEeeeeeecc-ccCcceEEEEcCcCccceecCC
Q 041236 17 LIGCCNGLLCIVVQIHE-HAGEADLVLWNPWTGRYKTVPI 55 (281)
Q Consensus 17 i~~scnGLlcl~~~~~~-~~~~~~~~V~NP~Tr~~~~LP~ 55 (281)
-+..++|-|.+..+..+ ......+.++||.|++|..+|+
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 34566776665544333 3345789999999999999975
No 39
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=71.90 E-value=77 Score=28.64 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=64.4
Q ss_pred ceEEEEEECCCCe--E---EEEeCCCCcCCCCeeEEEEe-CCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCCC
Q 041236 129 SSVILCFSLVDDK--F---RVILLPDDVAKGAEFDLFDF-GGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLED 200 (281)
Q Consensus 129 ~~~IlsFD~~~e~--f---~~i~lP~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~ 200 (281)
...|..|++..+. . ..+.+|.... -..+..- +|+..++..+ ....+.+..++. ..++...+++....
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~G---PRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSG---PRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSS---EEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCC---CcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeeccc
Confidence 4567777776654 4 3345665432 2233333 4666654333 389999999984 67777777765432
Q ss_pred cCc-cceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEEC--CCCeEEEEEE
Q 041236 201 VHS-SLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSL--EKKIFRKFKI 250 (281)
Q Consensus 201 ~~~-~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~--~t~~~~~i~~ 250 (281)
... ...-.. +.+..||+.|+..+. ... .|..|++ ++++++.+..
T Consensus 240 ~~~~~~~~~~-i~ispdg~~lyvsnr----~~~-sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 240 GFTGENAPAE-IAISPDGRFLYVSNR----GSN-SISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp TSCSSSSEEE-EEE-TTSSEEEEEEC----TTT-EEEEEEECTTTTTEEEEEE
T ss_pred cccccCCcee-EEEecCCCEEEEEec----cCC-EEEEEEEecCCCceEEEEE
Confidence 111 113444 777889987666532 444 4888887 5678887744
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=69.94 E-value=14 Score=22.36 Aligned_cols=34 Identities=0% Similarity=-0.080 Sum_probs=22.1
Q ss_pred ccccce-EEeeeccC-CcCceEEEEEECCCCeEEEE
Q 041236 112 ILPDRI-HDTKERFR-TIFSSVILCFSLVDDKFRVI 145 (281)
Q Consensus 112 v~~nG~-yWl~~~~~-~~~~~~IlsFD~~~e~f~~i 145 (281)
+.++|. |-+..... ......+..||..+.+|..+
T Consensus 8 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 8 VVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred EEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 345555 65554332 22457788999999998877
No 41
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=68.50 E-value=95 Score=28.32 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=54.6
Q ss_pred CCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCCCc-CccceeeeEEEEecCCcEEEEecCCCCCCCCc-EEEEE
Q 041236 163 GGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDV-HSSLYLAPVFFYSGAGEVLLHENDTYPSHGKD-VFYLY 238 (281)
Q Consensus 163 ~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~-~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~-~l~~Y 238 (281)
+|+++++..+ -..++++|..+. ..-..+.+++....- ........ +.+..+|+.|...+. .-.. .++.-
T Consensus 201 n~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa-Ihis~dGrFLYasNR----g~dsI~~f~V 273 (346)
T COG2706 201 NGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA-IHISPDGRFLYASNR----GHDSIAVFSV 273 (346)
T ss_pred CCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE-EEECCCCCEEEEecC----CCCeEEEEEE
Confidence 5888885544 489999999998 667776666554321 11234455 778899998888742 2122 34445
Q ss_pred ECCCCeEEEEEEec
Q 041236 239 SLEKKIFRKFKIEG 252 (281)
Q Consensus 239 d~~t~~~~~i~~~~ 252 (281)
|..+++++-+....
T Consensus 274 ~~~~g~L~~~~~~~ 287 (346)
T COG2706 274 DPDGGKLELVGITP 287 (346)
T ss_pred cCCCCEEEEEEEec
Confidence 88888888886653
No 42
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=68.22 E-value=66 Score=30.74 Aligned_cols=56 Identities=14% Similarity=0.320 Sum_probs=34.4
Q ss_pred CceeeEEEecCCCC-cCccceeeeEEE---EecCCc-EEEEecCCCCCCCCcEEEEEECCCCeEEEEEEe
Q 041236 187 LNWIKIMCIPRLED-VHSSLYLAPVFF---YSGAGE-VLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIE 251 (281)
Q Consensus 187 ~~W~~~~~i~~~~~-~~~~~~~~~~~~---~~~~g~-ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~~ 251 (281)
+.--.+|++++..- .+.+..++. .. ..-||+ |+++. .+. ++.||++|..++.++|.
T Consensus 245 eG~GnlYSvdldGkDlrrHTnFtd-YY~R~~nsDGkrIvFq~-------~Gd-IylydP~td~lekldI~ 305 (668)
T COG4946 245 EGVGNLYSVDLDGKDLRRHTNFTD-YYPRNANSDGKRIVFQN-------AGD-IYLYDPETDSLEKLDIG 305 (668)
T ss_pred cCccceEEeccCCchhhhcCCchh-ccccccCCCCcEEEEec-------CCc-EEEeCCCcCcceeeecC
Confidence 33445677766542 222222222 22 234665 66666 466 99999999999999886
No 43
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=66.64 E-value=1.2e+02 Score=30.65 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=64.4
Q ss_pred ccccce-EEeeeccCC-----c-CceEEEEEECCCCeEEEEeCCCCcCCCCeeEEEEe------------CCeEEEEEec
Q 041236 112 ILPDRI-HDTKERFRT-----I-FSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDF------------GGCLGLIHCH 172 (281)
Q Consensus 112 v~~nG~-yWl~~~~~~-----~-~~~~IlsFD~~~e~f~~i~lP~~~~~~~~~~L~~~------------~g~L~~~~~~ 172 (281)
.+..+. ||+...... . ....+++.+++++.|...++|....- ..|+.. ++-|++....
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~li---h~LSis~~~I~t~~~N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI---HSLSISDQKILTVSFNSTGDWIAFGCSK 328 (893)
T ss_pred EEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEE---EEeecccceeeEEEecccCCEEEEcCCc
Confidence 677788 888854321 1 24579999999999999999986421 122222 3444442222
Q ss_pred CCCCCeEEEEEEcCCceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCe
Q 041236 173 ARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKI 244 (281)
Q Consensus 173 ~~~~~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~ 244 (281)
-..+-||.++.++..++ ...+ ...+.. +.+..||+++..-- ++++ +-+||..++.
T Consensus 329 ---lgQLlVweWqsEsYVlK----QQgH---~~~i~~-l~YSpDgq~iaTG~-----eDgK-VKvWn~~Sgf 383 (893)
T KOG0291|consen 329 ---LGQLLVWEWQSESYVLK----QQGH---SDRITS-LAYSPDGQLIATGA-----EDGK-VKVWNTQSGF 383 (893)
T ss_pred ---cceEEEEEeeccceeee----cccc---ccceee-EEECCCCcEEEecc-----CCCc-EEEEeccCce
Confidence 56899999876444333 2222 112333 55566666554431 3344 6666665544
No 44
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=64.85 E-value=21 Score=27.01 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=36.4
Q ss_pred cceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCCC--CcEEEEEE
Q 041236 37 EADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDG--ITHFQIYS 102 (281)
Q Consensus 37 ~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~~--~~~~eVys 102 (281)
...+.+.||.|+.| ||...... -+.++.+.+|+..+.|+|+.....++ ..+|++|.
T Consensus 8 rA~Vm~~d~~tk~W--~P~~~~~~--------~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~~ 65 (111)
T cd01207 8 RASVMVYDDSNKKW--VPAGGGSQ--------GFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVK 65 (111)
T ss_pred EEEeeEEcCCCCcE--EcCCCCCC--------CcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEecC
Confidence 35789999999984 55544211 01234444899889999998765443 55677763
No 45
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=60.92 E-value=20 Score=19.80 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=18.1
Q ss_pred cCCcEEEEecCCCCCCCCcEEEEEECCCCeEEE
Q 041236 215 GAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRK 247 (281)
Q Consensus 215 ~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~ 247 (281)
.+|.+++.. .... ++++|.++++...
T Consensus 5 ~~~~v~~~~------~~g~-l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGS------TDGT-LYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEc------CCCE-EEEEEcccCcEEE
Confidence 455555555 5565 9999999887653
No 46
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=60.37 E-value=1.4e+02 Score=27.48 Aligned_cols=139 Identities=14% Similarity=0.051 Sum_probs=71.6
Q ss_pred cEEEEEEcCCC-----Cccc----------cc-cccce-EEeeeccCCcCceEEEEEECCCCe---EEEEeCCCCcCCCC
Q 041236 96 THFQIYSLNTN-----FWKT----------GI-LPDRI-HDTKERFRTIFSSVILCFSLVDDK---FRVILLPDDVAKGA 155 (281)
Q Consensus 96 ~~~eVys~~~~-----~Wr~----------~v-~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~---f~~i~lP~~~~~~~ 155 (281)
.++.+..+... .|+. .+ +.++. |.++. .+.....|++.|+.+-. +..+-+|..... .
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~-~ 328 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV-S 328 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE-E
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEEcCCCCce-e
Confidence 45556666554 5766 12 33444 44443 22356789999999865 553333332211 2
Q ss_pred eeEEEEeCCeEEEEEecCCCCCeEEEEEEcCC-ceeeEEEecCCCCcCccceeeeEEEEec-CCcEEEEecCCCCCCCCc
Q 041236 156 EFDLFDFGGCLGLIHCHARRRAHVDIWTRNEL-NWIKIMCIPRLEDVHSSLYLAPVFFYSG-AGEVLLHENDTYPSHGKD 233 (281)
Q Consensus 156 ~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~~-~g~ill~~~~~~~~~~~~ 233 (281)
-..+...++.|.+.... ...-.|.+++-. .|... .+++... + .+.. +.... ..++.+...+.. .+.
T Consensus 329 l~~~~~~~~~Lvl~~~~---~~~~~l~v~~~~~~~~~~-~~~~p~~---g-~v~~-~~~~~~~~~~~~~~ss~~--~P~- 396 (414)
T PF02897_consen 329 LEDVSLFKDYLVLSYRE---NGSSRLRVYDLDDGKESR-EIPLPEA---G-SVSG-VSGDFDSDELRFSYSSFT--TPP- 396 (414)
T ss_dssp EEEEEEETTEEEEEEEE---TTEEEEEEEETT-TEEEE-EEESSSS---S-EEEE-EES-TT-SEEEEEEEETT--EEE-
T ss_pred EEEEEEECCEEEEEEEE---CCccEEEEEECCCCcEEe-eecCCcc---e-EEec-cCCCCCCCEEEEEEeCCC--CCC-
Confidence 34555678999884443 344455555543 55553 3333322 0 1122 22223 335666654322 334
Q ss_pred EEEEEECCCCeEEEEE
Q 041236 234 VFYLYSLEKKIFRKFK 249 (281)
Q Consensus 234 ~l~~Yd~~t~~~~~i~ 249 (281)
+++.||+++++.+.+.
T Consensus 397 ~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 397 TVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEETTTTCEEEEE
T ss_pred EEEEEECCCCCEEEEE
Confidence 4999999999998874
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=57.60 E-value=1.3e+02 Score=26.20 Aligned_cols=121 Identities=18% Similarity=0.283 Sum_probs=60.5
Q ss_pred ecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccC-cccccceeeeCCCCceEEEEEEeCCCCcEEE
Q 041236 21 CNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFG-YINTFGFCFDQSTNDYKIVRLVNDDGITHFQ 99 (281)
Q Consensus 21 cnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g-~~~~~~l~~d~~~~~yKVv~~~~~~~~~~~e 99 (281)
-+|--|+... .+..+-+|||.-+.+.+--. |.| .+.-+.+.+|.+ | +...-+.-.+.
T Consensus 27 ~dGnY~ltcG-----sdrtvrLWNp~rg~liktYs----------ghG~EVlD~~~s~Dns----k---f~s~GgDk~v~ 84 (307)
T KOG0316|consen 27 VDGNYCLTCG-----SDRTVRLWNPLRGALIKTYS----------GHGHEVLDAALSSDNS----K---FASCGGDKAVQ 84 (307)
T ss_pred cCCCEEEEcC-----CCceEEeecccccceeeeec----------CCCceeeecccccccc----c---cccCCCCceEE
Confidence 4455555542 56789999999887664322 222 011111113321 1 11111234566
Q ss_pred EEEcCCC----Cccc------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCCCCcCCCCeeEEEEeCCeEEE
Q 041236 100 IYSLNTN----FWKT------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGL 168 (281)
Q Consensus 100 Vys~~~~----~Wr~------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~~~~~~~~~~L~~~~g~L~~ 168 (281)
|++..|+ .||. .|-.|-- --+.. +.....|-++|-.+..|..|+.=+...+ ...-..+.+..-+
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~S---gsfD~s~r~wDCRS~s~ePiQildea~D--~V~Si~v~~heIv 159 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVAS---GSFDSSVRLWDCRSRSFEPIQILDEAKD--GVSSIDVAEHEIV 159 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEe---ccccceeEEEEcccCCCCccchhhhhcC--ceeEEEecccEEE
Confidence 7777763 5666 2222222 11111 1134678889999999988876554432 1222334555555
No 48
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=53.75 E-value=23 Score=21.95 Aligned_cols=22 Identities=9% Similarity=-0.003 Sum_probs=18.0
Q ss_pred cceEEEEcCcCccceecCCCcc
Q 041236 37 EADLVLWNPWTGRYKTVPISVV 58 (281)
Q Consensus 37 ~~~~~V~NP~Tr~~~~LP~~~~ 58 (281)
...++++||.|++|.+++..+.
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCC
Confidence 4679999999999999965443
No 49
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=52.98 E-value=2e+02 Score=27.45 Aligned_cols=105 Identities=14% Similarity=0.252 Sum_probs=60.5
Q ss_pred ceEEEEEECCCCeEEEEeCCCCcCCC--CeeEEEEeCCeEEEEEecCCCCCeEEEEEEcCCceeeEEEecCCCCcCccce
Q 041236 129 SSVILCFSLVDDKFRVILLPDDVAKG--AEFDLFDFGGCLGLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLY 206 (281)
Q Consensus 129 ~~~IlsFD~~~e~f~~i~lP~~~~~~--~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~ 206 (281)
..++.++|+++.++..+..|...... ..+.++-.+..|.+... ...|.+--++-..|.--++|+-.
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----~G~I~lLhakT~eli~s~KieG~-------- 346 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----NGHIHLLHAKTKELITSFKIEGV-------- 346 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc----CceEEeehhhhhhhhheeeeccE--------
Confidence 56899999999999999888765421 11222222333333211 23333332222666665555432
Q ss_pred eeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEE-EEec
Q 041236 207 LAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKF-KIEG 252 (281)
Q Consensus 207 ~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i-~~~~ 252 (281)
.+. ++.+.+|+.++... ..++ ++.+|++++...+. ..+|
T Consensus 347 v~~-~~fsSdsk~l~~~~-----~~Ge-V~v~nl~~~~~~~rf~D~G 386 (514)
T KOG2055|consen 347 VSD-FTFSSDSKELLASG-----GTGE-VYVWNLRQNSCLHRFVDDG 386 (514)
T ss_pred Eee-EEEecCCcEEEEEc-----CCce-EEEEecCCcceEEEEeecC
Confidence 444 66667776555552 4566 99999998875544 4444
No 50
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=52.93 E-value=1.8e+02 Score=26.44 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=57.4
Q ss_pred eEEEEEECCCCeEEEEeCCCCcCCCCeeEEEEeCCeEEEEEecCCC--CC-----eEEEEEEc------C--CceeeEEE
Q 041236 130 SVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARR--RA-----HVDIWTRN------E--LNWIKIMC 194 (281)
Q Consensus 130 ~~IlsFD~~~e~f~~i~lP~~~~~~~~~~L~~~~g~L~~~~~~~~~--~~-----~i~IWvL~------~--~~W~~~~~ 194 (281)
..++.||.++.... .+|..............+|+|++....... .. .+++-+.. . ..|.-..
T Consensus 86 ~~t~vyDt~t~av~--~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 86 GRTLVYDTDTRAVA--TGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred CCeEEEECCCCeEe--ccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 44889999888776 445432211223334458888883322101 11 55555443 1 4444322
Q ss_pred ecCCCCcCccc----eeeeEEEEecCC-cEEEEecCCCCCCCC--cEEEEEECCCCeEEEE
Q 041236 195 IPRLEDVHSSL----YLAPVFFYSGAG-EVLLHENDTYPSHGK--DVFYLYSLEKKIFRKF 248 (281)
Q Consensus 195 i~~~~~~~~~~----~~~~~~~~~~~g-~ill~~~~~~~~~~~--~~l~~Yd~~t~~~~~i 248 (281)
++...+..... .+.. .++- +| .|++.. ... . .+.||.++.+|+++
T Consensus 163 LP~PPf~~~~~~~~~~i~s-Yavv-~g~~I~vS~------~~~~~G-TysfDt~~~~W~~~ 214 (342)
T PF07893_consen 163 LPPPPFVRDRRYSDYRITS-YAVV-DGRTIFVSV------NGRRWG-TYSFDTESHEWRKH 214 (342)
T ss_pred CCCCCccccCCcccceEEE-EEEe-cCCeEEEEe------cCCceE-EEEEEcCCcceeec
Confidence 44333322111 1333 5555 56 477756 322 4 89999999999998
No 51
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=52.75 E-value=46 Score=20.50 Aligned_cols=41 Identities=7% Similarity=0.119 Sum_probs=26.9
Q ss_pred eEEEeecCeEeeeeee--c-cccCcceEEEEcCcCccceecCCC
Q 041236 16 QLIGCCNGLLCIVVQI--H-EHAGEADLVLWNPWTGRYKTVPIS 56 (281)
Q Consensus 16 ~i~~scnGLlcl~~~~--~-~~~~~~~~~V~NP~Tr~~~~LP~~ 56 (281)
......+|=|++.... . .......+.++++.|.+|..+++.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 3444566666655443 1 112356889999999999999764
No 52
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.31 E-value=1.8e+02 Score=26.20 Aligned_cols=216 Identities=12% Similarity=0.154 Sum_probs=114.0
Q ss_pred CCCCcCCeEEEee-cCeEeeeeeeccccCcceEEEEcCcCccceec-CCCccCCCcceeccCcccccceeeeCCCCceEE
Q 041236 9 PLGKVLHQLIGCC-NGLLCIVVQIHEHAGEADLVLWNPWTGRYKTV-PISVVGLTLDMYGFGYINTFGFCFDQSTNDYKI 86 (281)
Q Consensus 9 p~~~~~~~i~~sc-nGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~L-P~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKV 86 (281)
|+..+.|.+..+- .+.++.... +.....+|++|.|++.... ++++.+ ..+|.| +|.+... .
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaR----RPG~~~~v~D~~~g~~~~~~~a~~gR---HFyGHg-------~fs~dG~---~ 64 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFAR----RPGTFALVFDCRTGQLLQRLWAPPGR---HFYGHG-------VFSPDGR---L 64 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEe----CCCcEEEEEEcCCCceeeEEcCCCCC---EEecCE-------EEcCCCC---E
Confidence 5566677665544 555554443 2467889999999998755 333332 245666 2554332 2
Q ss_pred EEEEeCC---CCcEEEEEEcCC-----CCccc-------------c---ccccce-EEeeeccC-----CcCceEEEEEE
Q 041236 87 VRLVNDD---GITHFQIYSLNT-----NFWKT-------------G---ILPDRI-HDTKERFR-----TIFSSVILCFS 136 (281)
Q Consensus 87 v~~~~~~---~~~~~eVys~~~-----~~Wr~-------------~---v~~nG~-yWl~~~~~-----~~~~~~IlsFD 136 (281)
+.....+ +.-.+-||+... +.|.. + |..||= .=-..... ..-...++-.|
T Consensus 65 LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld 144 (305)
T PF07433_consen 65 LYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLD 144 (305)
T ss_pred EEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEe
Confidence 2222222 344566777662 12322 1 233333 21111100 01135688888
Q ss_pred CCCCe-EEEEeCCCCcCCCCeeEEEEeC-CeEEE-EEecCC-CCCeEEEEEEcC-CceeeEEEecCCCCcCccceeeeEE
Q 041236 137 LVDDK-FRVILLPDDVAKGAEFDLFDFG-GCLGL-IHCHAR-RRAHVDIWTRNE-LNWIKIMCIPRLEDVHSSLYLAPVF 211 (281)
Q Consensus 137 ~~~e~-f~~i~lP~~~~~~~~~~L~~~~-g~L~~-~~~~~~-~~~~i~IWvL~~-~~W~~~~~i~~~~~~~~~~~~~~~~ 211 (281)
..+.+ ..+..+|+....-.-..|..-. |..++ .+.... ....--|...+. .. -..+.++.........+..- +
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gS-I 222 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGS-I 222 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEE-E
Confidence 88876 5777898866442345566554 88877 665421 122223333332 22 22233333222222335555 8
Q ss_pred EEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEE
Q 041236 212 FYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKF 248 (281)
Q Consensus 212 ~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i 248 (281)
+++.+|..+.... | ... .+.++|..++++...
T Consensus 223 a~~~~g~~ia~ts---P-rGg-~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 223 AADRDGRLIAVTS---P-RGG-RVAVWDAATGRLLGS 254 (305)
T ss_pred EEeCCCCEEEEEC---C-CCC-EEEEEECCCCCEeec
Confidence 8888887776662 1 223 488999999998876
No 53
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=50.84 E-value=62 Score=29.57 Aligned_cols=115 Identities=14% Similarity=0.172 Sum_probs=65.2
Q ss_pred ce-EEeeeccCCcCceEEEEEECCCCeEEEE---eCCCCc--CCCC---eeEEEEe---CCeEEE-EEecC---CCCCeE
Q 041236 116 RI-HDTKERFRTIFSSVILCFSLVDDKFRVI---LLPDDV--AKGA---EFDLFDF---GGCLGL-IHCHA---RRRAHV 179 (281)
Q Consensus 116 G~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i---~lP~~~--~~~~---~~~L~~~---~g~L~~-~~~~~---~~~~~i 179 (281)
|. ||+.+ ...|...|++.+.-... .+-... ..++ ...+..+ .|+|.+ .+... .....-
T Consensus 196 ~~~~F~Sy------~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 196 GRLYFVSY------EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp TEEEEEBT------TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred CeEEEEec------CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 45 66665 35799999998853332 221111 1111 1233444 488988 33221 135688
Q ss_pred EEEEEcCCceeeEEEecCCCCcCccceeeeEEEEecCCc-EEEEecCCCCCCCCcEEEEEECCCCeEEEE
Q 041236 180 DIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGE-VLLHENDTYPSHGKDVFYLYSLEKKIFRKF 248 (281)
Q Consensus 180 ~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~-ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i 248 (281)
+||+++-+.=+++.|+++... ... +.++.+.+ +|+.... .... |..||..|++..+.
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~------~~S-i~Vsqd~~P~L~~~~~----~~~~-l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHP------IDS-IAVSQDDKPLLYALSA----GDGT-LDVYDAATGKLVRS 327 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEE------ESE-EEEESSSS-EEEEEET----TTTE-EEEEETTT--EEEE
T ss_pred EEEEEECCCCeEEEEEeCCCc------cce-EEEccCCCcEEEEEcC----CCCe-EEEEeCcCCcEEee
Confidence 999999766667777776542 223 77788776 5544311 3455 99999999987665
No 54
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=47.14 E-value=33 Score=20.05 Aligned_cols=18 Identities=6% Similarity=-0.141 Sum_probs=14.4
Q ss_pred CCCcEEEEEECCCCeEEEE
Q 041236 230 HGKDVFYLYSLEKKIFRKF 248 (281)
Q Consensus 230 ~~~~~l~~Yd~~t~~~~~i 248 (281)
.... ++++|.+|++...-
T Consensus 8 ~~g~-l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 8 PDGY-LYALDAKTGKVLWK 25 (38)
T ss_dssp TTSE-EEEEETTTTSEEEE
T ss_pred CCCE-EEEEECCCCCEEEe
Confidence 5565 99999999987655
No 55
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=42.72 E-value=1.3e+02 Score=29.49 Aligned_cols=97 Identities=15% Similarity=0.327 Sum_probs=56.1
Q ss_pred eecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCCCCcEEE
Q 041236 20 CCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQ 99 (281)
Q Consensus 20 scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~~~~~~e 99 (281)
+.||-++++.+ ++..+.||||.-++.+..= ........+.-- |-|-+++=-|+.-. +...+.
T Consensus 59 n~dG~lL~SGS-----DD~r~ivWd~~~~KllhsI--~TgHtaNIFsvK--------FvP~tnnriv~sgA---gDk~i~ 120 (758)
T KOG1310|consen 59 NADGELLASGS-----DDTRLIVWDPFEYKLLHSI--STGHTANIFSVK--------FVPYTNNRIVLSGA---GDKLIK 120 (758)
T ss_pred cCCCCEEeecC-----CcceEEeecchhcceeeee--ecccccceeEEe--------eeccCCCeEEEecc---CcceEE
Confidence 57888888774 6789999999955544322 221212233333 56666554444322 234566
Q ss_pred EEEcCC--------------CCccc--------cccccc-e-EEeeeccCCcCceEEEEEECCC
Q 041236 100 IYSLNT--------------NFWKT--------GILPDR-I-HDTKERFRTIFSSVILCFSLVD 139 (281)
Q Consensus 100 Vys~~~--------------~~Wr~--------~v~~nG-~-yWl~~~~~~~~~~~IlsFD~~~ 139 (281)
+|++.+ ..|.. .+.-|| . +|-+..+ +.|.-+|+..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED-----GtirQyDiRE 179 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED-----GTIRQYDIRE 179 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC-----cceeeecccC
Confidence 666653 23433 566777 4 8987743 4577777664
No 56
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=40.39 E-value=83 Score=22.69 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=21.3
Q ss_pred EEEecC-CcEEEEecC-CCC-----------CCCCcEEEEEECCCCeEEEEE
Q 041236 211 FFYSGA-GEVLLHEND-TYP-----------SHGKDVFYLYSLEKKIFRKFK 249 (281)
Q Consensus 211 ~~~~~~-g~ill~~~~-~~~-----------~~~~~~l~~Yd~~t~~~~~i~ 249 (281)
+.+..+ |.|++...+ .|. ...++ ++.||++||+.+.+.
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GR-ll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGR-LLRYDPSTKETTVLL 53 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EE-EEEEETTTTEEEEEE
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcC-EEEEECCCCeEEEeh
Confidence 445666 667666532 222 12344 999999999998883
No 57
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=39.09 E-value=2e+02 Score=26.42 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=43.2
Q ss_pred EEEEEEcCCceeeEEEecCCCCcCccceeeeEEEEecCCc-EEEEecCCCCCCCCcEEEEEECCCCe-EEEE
Q 041236 179 VDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGE-VLLHENDTYPSHGKDVFYLYSLEKKI-FRKF 248 (281)
Q Consensus 179 i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~-ill~~~~~~~~~~~~~l~~Yd~~t~~-~~~i 248 (281)
=+||+++-.+++.+.+|+.... ... +.++.||+ .++..+. .... +..+|..+++ ++.+
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG~~------~~~-iavS~Dgkp~lyvtn~----~s~~-VsViD~~t~k~i~~i 338 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELGHE------IDS-INVSQDAKPLLYALST----GDKT-LYIFDAETGKELSSV 338 (352)
T ss_pred CEEEEEECCCCeEEEEEeCCCc------eee-EEECCCCCeEEEEeCC----CCCc-EEEEECcCCeEEeee
Confidence 3899999899999999887653 334 77889998 7776632 3455 9999999885 4555
No 58
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=37.96 E-value=2.4e+02 Score=23.65 Aligned_cols=104 Identities=9% Similarity=0.060 Sum_probs=55.2
Q ss_pred eEEEEEECCCCeEEEEeCCCCcCCCCeeEEEEe-CC-eEEEEEecCCCCCeEEEEEEcC--CceeeEEEe-cCCCCcCcc
Q 041236 130 SVILCFSLVDDKFRVILLPDDVAKGAEFDLFDF-GG-CLGLIHCHARRRAHVDIWTRNE--LNWIKIMCI-PRLEDVHSS 204 (281)
Q Consensus 130 ~~IlsFD~~~e~f~~i~lP~~~~~~~~~~L~~~-~g-~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i-~~~~~~~~~ 204 (281)
..|..++.. .+...+.- ... .--.|... +| .|.+.... ...|...-++. ..+.....+ +.....
T Consensus 115 g~v~~~~~~-~~~~~~~~--~~~--~pNGi~~s~dg~~lyv~ds~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVAD--GLG--FPNGIAFSPDGKTLYVADSF---NGRIWRFDLDADGGELSNRRVFIDFPGGP--- 183 (246)
T ss_dssp EEEEEEETT-SEEEEEEE--EES--SEEEEEEETTSSEEEEEETT---TTEEEEEEEETTTCCEEEEEEEEE-SSSS---
T ss_pred cceEEECCC-CeEEEEec--Ccc--cccceEECCcchheeecccc---cceeEEEeccccccceeeeeeEEEcCCCC---
Confidence 679999999 54443311 111 01123333 34 45554433 44433333333 335543332 333221
Q ss_pred ceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEEe
Q 041236 205 LYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIE 251 (281)
Q Consensus 205 ~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~~ 251 (281)
....- ++++.+|.|++... .... +..||++.+.++.+..+
T Consensus 184 g~pDG-~~vD~~G~l~va~~-----~~~~-I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 184 GYPDG-LAVDSDGNLWVADW-----GGGR-IVVFDPDGKLLREIELP 223 (246)
T ss_dssp CEEEE-EEEBTTS-EEEEEE-----TTTE-EEEEETTSCEEEEEE-S
T ss_pred cCCCc-ceEcCCCCEEEEEc-----CCCE-EEEECCCccEEEEEcCC
Confidence 13444 77889999988862 3455 99999997778888776
No 59
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=37.58 E-value=3e+02 Score=28.10 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=39.1
Q ss_pred CCeEEEEEEcC--------CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCC-CeEE
Q 041236 176 RAHVDIWTRNE--------LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEK-KIFR 246 (281)
Q Consensus 176 ~~~i~IWvL~~--------~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t-~~~~ 246 (281)
+..+.||++.+ ..|+++.-=.... ..... .+..+||.++... .+.. +..||..+ ++++
T Consensus 478 dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k-----~~i~a-~~fs~dGslla~s------~~~~-Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 478 DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK-----TPITA-LCFSQDGSLLAVS------FDDT-ITIWDYDTKNELL 544 (792)
T ss_pred CCeEEEEEEecccccCcCccceEEeeeecccc-----Ccccc-hhhcCCCcEEEEe------cCCE-EEEecCCChhhhh
Confidence 68999999954 6799964322211 01222 4456788888887 5554 99999999 5554
Q ss_pred EE
Q 041236 247 KF 248 (281)
Q Consensus 247 ~i 248 (281)
..
T Consensus 545 ~~ 546 (792)
T KOG1963|consen 545 CT 546 (792)
T ss_pred cc
Confidence 44
No 60
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=35.85 E-value=3e+02 Score=27.16 Aligned_cols=108 Identities=11% Similarity=0.083 Sum_probs=56.3
Q ss_pred ceEEEEEECCCCeE-EEEeCCCCcCCCCeeEEEEeCCeEEEEEecCCCCCeEEEEEEcCCceeeE--EEecCCCCcC--c
Q 041236 129 SSVILCFSLVDDKF-RVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNELNWIKI--MCIPRLEDVH--S 203 (281)
Q Consensus 129 ~~~IlsFD~~~e~f-~~i~lP~~~~~~~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~~~W~~~--~~i~~~~~~~--~ 203 (281)
...|..||++.+.| +.+..-... -....+-++.|-||+... +..++.|=....+=... +...+....+ .
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~--lN~v~in~~hgLla~Gt~----~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGE--LNVVSINEEHGLLACGTE----DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred CcceEEEEcccccccccccccccc--ceeeeecCccceEEeccc----CceEEEecchhhhhheeeecccccCCCccccc
Confidence 34688999999888 333221110 033455666677776432 57888898776221111 1222122211 1
Q ss_pred cceeeeEEEEecCCc-EEEEecCCCCCCCCcEEEEEECCCCeEEEEEE
Q 041236 204 SLYLAPVFFYSGAGE-VLLHENDTYPSHGKDVFYLYSLEKKIFRKFKI 250 (281)
Q Consensus 204 ~~~~~~~~~~~~~g~-ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~ 250 (281)
...... +...++|- +-+-. ..+. +++||+++.+--.+..
T Consensus 228 ~~svTa-l~F~d~gL~~aVGt------s~G~-v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 228 APSVTA-LKFRDDGLHVAVGT------STGS-VLIYDLRASKPLLVKD 267 (703)
T ss_pred cCcceE-EEecCCceeEEeec------cCCc-EEEEEcccCCceeecc
Confidence 112333 44455553 33333 4565 9999999887544433
No 61
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=34.34 E-value=1.3e+02 Score=22.78 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=29.9
Q ss_pred EEEEEECCCCeEEEEEEe--cCCCCCceEEEEeecCcccCCCCC
Q 041236 234 VFYLYSLEKKIFRKFKIE--GMEQFPFHIHMAYTPSLTLLTRCR 275 (281)
Q Consensus 234 ~l~~Yd~~t~~~~~i~~~--~~~~~~~~~~~~Y~eSLv~~~~~~ 275 (281)
.++++|+++.+++.+..+ ............|..+|.-+....
T Consensus 21 ~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 64 (129)
T PF08268_consen 21 VIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYND 64 (129)
T ss_pred EEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecC
Confidence 599999999999999886 211112556778888887654433
No 62
>smart00612 Kelch Kelch domain.
Probab=32.64 E-value=44 Score=19.62 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=17.9
Q ss_pred cceEEEEcCcCccceecCCCcc
Q 041236 37 EADLVLWNPWTGRYKTVPISVV 58 (281)
Q Consensus 37 ~~~~~V~NP~Tr~~~~LP~~~~ 58 (281)
...+.++||.|.+|..+|+-+.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCC
Confidence 4578899999999999986543
No 63
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=30.78 E-value=73 Score=23.99 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=27.7
Q ss_pred cceEEEEcCcCc-cceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEE
Q 041236 37 EADLVLWNPWTG-RYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLV 90 (281)
Q Consensus 37 ~~~~~V~NP~Tr-~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~ 90 (281)
...+++.+|.|+ .|. |..+.. .++-+.+|+..+.|+|+-+.
T Consensus 10 rA~V~~yd~~tKk~Wv--Ps~~~~-----------~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWI--PASKHA-----------VTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeE--eCCCCc-----------eeEEEEecCCCcEEEEEEec
Confidence 467999999997 554 443311 12333389999999999864
No 64
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=30.15 E-value=3.7e+02 Score=23.40 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=65.3
Q ss_pred cccccce-EEeeeccCCcCceEEEEEECCCC-eEEEEeCCCCcCCC---------CeeEEEEeCCeEEEEEecCCCCCeE
Q 041236 111 GILPDRI-HDTKERFRTIFSSVILCFSLVDD-KFRVILLPDDVAKG---------AEFDLFDFGGCLGLIHCHARRRAHV 179 (281)
Q Consensus 111 ~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e-~f~~i~lP~~~~~~---------~~~~L~~~~g~L~~~~~~~~~~~~i 179 (281)
.|..||+ |.... ....|+.||++++ +-....+|...... .+..|.+-..-|.+.....++...+
T Consensus 73 ~VVynGs~yynk~-----~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~i 147 (249)
T KOG3545|consen 73 HVVYNGSLYYNKA-----GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTI 147 (249)
T ss_pred eEEEcceEEeecc-----CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcE
Confidence 6888999 87664 3567999999996 44555677543211 3456666665565522222245666
Q ss_pred EEEEEcC------CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEEe
Q 041236 180 DIWTRNE------LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIE 251 (281)
Q Consensus 180 ~IWvL~~------~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~~ 251 (281)
.|=.|+. ..|.-.+. .... + ..+ .-.| ++...++... .....-++||..+++-+.+.++
T Consensus 148 v~skLdp~tl~~e~tW~T~~~--k~~~-~--~aF------~iCG-vLY~v~S~~~-~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 148 VLSKLDPETLEVERTWNTTLP--KRSA-G--NAF------MICG-VLYVVHSYNC-THTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred EeeccCHHHhheeeeeccccC--CCCc-C--ceE------EEee-eeEEEecccc-CCceEEEEEEcCCCceeccccc
Confidence 6666664 44532111 1111 0 011 1122 2333222110 1222137999999999888665
No 65
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=28.80 E-value=1.3e+02 Score=26.08 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=36.1
Q ss_pred eecCeEeeeeeeccccCcceEEEEcCcCccceec--CCCccCCCcceeccCcccccceeeeCCCCceEEE
Q 041236 20 CCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTV--PISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIV 87 (281)
Q Consensus 20 scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~L--P~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv 87 (281)
+.||.|.-.. ..+.+|.-||.|+.-..+ .+.........+||- |+|..++-+||
T Consensus 36 pa~G~LYgl~------~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvD--------FNP~aDRlRvv 91 (236)
T PF14339_consen 36 PANGQLYGLG------STGRLYTINPATGAATPVGASPLTVALSGTAFGVD--------FNPAADRLRVV 91 (236)
T ss_pred cCCCCEEEEe------CCCcEEEEECCCCeEEEeecccccccccCceEEEe--------cCcccCcEEEE
Confidence 6788777665 578999999999997766 222211111245555 88987777766
No 66
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=27.18 E-value=3e+02 Score=27.42 Aligned_cols=100 Identities=11% Similarity=0.197 Sum_probs=56.0
Q ss_pred ceEEEEEECCCCeEEEE-eCCCCcCCCCeeEEEEe--CCeEEEEEecCCCCCeEEEEEEcC--Cceee-EEEecCCCCcC
Q 041236 129 SSVILCFSLVDDKFRVI-LLPDDVAKGAEFDLFDF--GGCLGLIHCHARRRAHVDIWTRNE--LNWIK-IMCIPRLEDVH 202 (281)
Q Consensus 129 ~~~IlsFD~~~e~f~~i-~lP~~~~~~~~~~L~~~--~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~-~~~i~~~~~~~ 202 (281)
...+..|++++++|..+ ..-+....+.-..|... ++-||+... ...+.+|-|+. ..|-+ .++++....
T Consensus 450 ~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t----~g~I~v~nl~~~~~~~l~~rln~~vTa~-- 523 (691)
T KOG2048|consen 450 IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST----RGQIFVYNLETLESHLLKVRLNIDVTAA-- 523 (691)
T ss_pred cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec----cceEEEEEcccceeecchhccCcceeee--
Confidence 35567788888888766 22222111122344443 567777443 57899999986 44544 222111111
Q ss_pred ccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEE
Q 041236 203 SSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKF 248 (281)
Q Consensus 203 ~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i 248 (281)
.++| +..+.|+... .+.+ ++.||++.+++.+.
T Consensus 524 ---~~~~----~~~~~lvvat------s~nQ-v~efdi~~~~l~~w 555 (691)
T KOG2048|consen 524 ---AFSP----FVRNRLVVAT------SNNQ-VFEFDIEARNLTRW 555 (691)
T ss_pred ---eccc----cccCcEEEEe------cCCe-EEEEecchhhhhhh
Confidence 1222 4556788777 5676 99999966554443
No 67
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=24.77 E-value=3.6e+02 Score=24.02 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=41.2
Q ss_pred CCeEEEEEecCCCCCeEEEEEEcC-CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECC
Q 041236 163 GGCLGLIHCHARRRAHVDIWTRNE-LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLE 241 (281)
Q Consensus 163 ~g~L~~~~~~~~~~~~i~IWvL~~-~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~ 241 (281)
+|+||...-. ...+-+|-|++ +. .|.++.... ++. +++..+.-.|..- .... +.++|++
T Consensus 203 DGslcasGgk---dg~~~LwdL~~~k~---lysl~a~~~------v~s-l~fspnrywL~~a------t~~s-IkIwdl~ 262 (315)
T KOG0279|consen 203 DGSLCASGGK---DGEAMLWDLNEGKN---LYSLEAFDI------VNS-LCFSPNRYWLCAA------TATS-IKIWDLE 262 (315)
T ss_pred CCCEEecCCC---CceEEEEEccCCce---eEeccCCCe------Eee-EEecCCceeEeec------cCCc-eEEEecc
Confidence 6999985443 78999999998 33 666666553 444 6666664333333 2343 8888998
Q ss_pred CCeE
Q 041236 242 KKIF 245 (281)
Q Consensus 242 t~~~ 245 (281)
++..
T Consensus 263 ~~~~ 266 (315)
T KOG0279|consen 263 SKAV 266 (315)
T ss_pred chhh
Confidence 8773
No 68
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=22.33 E-value=5.9e+02 Score=23.07 Aligned_cols=71 Identities=7% Similarity=0.098 Sum_probs=38.7
Q ss_pred EEEEcCCCCccc-----------cccccce-EEeeeccCCcCceEEEEEECCCCeE-----------EEEeCCCCcCCCC
Q 041236 99 QIYSLNTNFWKT-----------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKF-----------RVILLPDDVAKGA 155 (281)
Q Consensus 99 eVys~~~~~Wr~-----------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f-----------~~i~lP~~~~~~~ 155 (281)
.-|+-++..|+. +.++..- -|+.-.... ....|-+.|+.+-.. ..+..|..... .
T Consensus 202 ysfDt~~~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~-~~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~~~~~-~ 279 (342)
T PF07893_consen 202 YSFDTESHEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDG-GGGHLCACDVSSADSASPPPEWKLTWEELFPPEEWRH-V 279 (342)
T ss_pred EEEEcCCcceeeccceecCcCCccEECCCcCeEEEeccCC-CCcEEEEEeccccccCCCCCcceeccccccccccccc-c
Confidence 334445577877 4455555 666654322 124788888887322 22233322111 3
Q ss_pred eeEEEEeC-CeEEEEEe
Q 041236 156 EFDLFDFG-GCLGLIHC 171 (281)
Q Consensus 156 ~~~L~~~~-g~L~~~~~ 171 (281)
...|..++ |+.|+..+
T Consensus 280 ~~~Lv~lG~grFCi~~~ 296 (342)
T PF07893_consen 280 GATLVYLGSGRFCIVEF 296 (342)
T ss_pred CceEEECCCCCEEEEEE
Confidence 46777776 88888554
No 69
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=22.11 E-value=83 Score=30.77 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=31.4
Q ss_pred ecCCCCCcCC--eE--EEeecCeEeeeeeeccccCcceEEEEcCcCccceec
Q 041236 6 LNFPLGKVLH--QL--IGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTV 53 (281)
Q Consensus 6 ~~~p~~~~~~--~i--~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~L 53 (281)
+-.||..... .+ +..|||||+|.. ..+.+-.|.|-+|+....
T Consensus 167 fL~P~~~~~~~lN~v~in~~hgLla~Gt------~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 167 FLNPFETDSGELNVVSINEEHGLLACGT------EDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred cccccccccccceeeeecCccceEEecc------cCceEEEecchhhhhhee
Confidence 3456665433 22 468999999998 578999999999987765
No 70
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=21.89 E-value=3.1e+02 Score=20.08 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=34.7
Q ss_pred cceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCCC--CcEEEEEE
Q 041236 37 EADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDG--ITHFQIYS 102 (281)
Q Consensus 37 ~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~~--~~~~eVys 102 (281)
...+++.+|.+++|...- . ....+.|..|+..+.|.|......+. ..++++|.
T Consensus 8 ~a~v~~~~~~~~~W~~~~---~----------~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~ 62 (104)
T cd00837 8 VAQVYTADPSTGKWVPAS---G----------GTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYK 62 (104)
T ss_pred EEEEEEECCCCCceEECC---C----------CeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecC
Confidence 457889999988887421 1 11234444899888898887765433 55677764
No 71
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=21.72 E-value=1.4e+02 Score=17.36 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=13.6
Q ss_pred cCCcEEEEecCCCCCCCCcEEEEEECCC
Q 041236 215 GAGEVLLHENDTYPSHGKDVFYLYSLEK 242 (281)
Q Consensus 215 ~~g~ill~~~~~~~~~~~~~l~~Yd~~t 242 (281)
.+|.|++.. .+.. ++++|.+|
T Consensus 20 ~~g~vyv~~------~dg~-l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGT------GDGN-LYALDAAT 40 (40)
T ss_dssp CTSEEEEE-------TTSE-EEEEETT-
T ss_pred ECCEEEEEc------CCCE-EEEEeCCC
Confidence 455666666 5675 99999875
No 72
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.47 E-value=5.9e+02 Score=23.59 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=42.4
Q ss_pred eEEEEEecCCCCCeEEEEEEcCCceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCe
Q 041236 165 CLGLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKI 244 (281)
Q Consensus 165 ~L~~~~~~~~~~~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~ 244 (281)
..+..... +.+|.+|-+.-. ++-+.+..+ ...++. +.+...|+-++.+- +++. |-.||+++++
T Consensus 305 ~~l~s~Sr---DktIk~wdv~tg----~cL~tL~gh---dnwVr~-~af~p~Gkyi~Sca-----DDkt-lrvwdl~~~~ 367 (406)
T KOG0295|consen 305 QVLGSGSR---DKTIKIWDVSTG----MCLFTLVGH---DNWVRG-VAFSPGGKYILSCA-----DDKT-LRVWDLKNLQ 367 (406)
T ss_pred cEEEeecc---cceEEEEeccCC----eEEEEEecc---cceeee-eEEcCCCeEEEEEe-----cCCc-EEEEEeccce
Confidence 44444443 789999988632 222233322 235776 77778888777762 4564 9999999988
Q ss_pred EEEE
Q 041236 245 FRKF 248 (281)
Q Consensus 245 ~~~i 248 (281)
-...
T Consensus 368 cmk~ 371 (406)
T KOG0295|consen 368 CMKT 371 (406)
T ss_pred eeec
Confidence 6554
No 73
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=20.89 E-value=8e+02 Score=24.03 Aligned_cols=146 Identities=13% Similarity=0.126 Sum_probs=73.0
Q ss_pred cCeEeeeeeec-----cccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCCC--
Q 041236 22 NGLLCIVVQIH-----EHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDG-- 94 (281)
Q Consensus 22 nGLlcl~~~~~-----~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~~-- 94 (281)
+||||+...+. +++....+++.+-- ++....|-..... .|.+- +.+++.+|-|+.=+.+..
T Consensus 230 t~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GP---Vhdv~--------W~~s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 230 TALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGP---VHDVT--------WSPSGREFAVVYGFMPAKVT 297 (566)
T ss_pred ceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCC---ceEEE--------ECCCCCEEEEEEecccceEE
Confidence 37888875433 23344566766655 4544455443211 23333 666777777776544321
Q ss_pred --CcEEE-EEEcCCCCccccccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCCCCcCCCCeeEEEEe--CCeEEE
Q 041236 95 --ITHFQ-IYSLNTNFWKTGILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDF--GGCLGL 168 (281)
Q Consensus 95 --~~~~e-Vys~~~~~Wr~~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~~~~~~~~~~L~~~--~g~L~~ 168 (281)
...|. ||+++++- |..++.|=. |.+.-.+-+.-++.|-.+|+.+ +..|.=+... ...+.+. +|.--+
T Consensus 298 ifnlr~~~v~df~egp-RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~----~tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 298 IFNLRGKPVFDFPEGP-RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAA----NTTVFEWSPDGEYFL 370 (566)
T ss_pred EEcCCCCEeEeCCCCC-ccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccC----CceEEEEcCCCcEEE
Confidence 11122 34444432 334555555 4444333233456788888887 4444322221 2334444 355444
Q ss_pred -EEecC--CCCCeEEEEEEcC
Q 041236 169 -IHCHA--RRRAHVDIWTRNE 186 (281)
Q Consensus 169 -~~~~~--~~~~~i~IWvL~~ 186 (281)
....+ +.++.+.||=...
T Consensus 371 TATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 371 TATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEeccccEEecCCeEEEEecC
Confidence 32221 2478899997765
No 74
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=20.46 E-value=72 Score=17.04 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=11.7
Q ss_pred EEEcCcCccceecCC
Q 041236 41 VLWNPWTGRYKTVPI 55 (281)
Q Consensus 41 ~V~NP~Tr~~~~LP~ 55 (281)
.|||.+++.++..+.
T Consensus 7 ~iwn~~~~~~vvvsE 21 (24)
T PF13018_consen 7 LIWNKARGTWVVVSE 21 (24)
T ss_pred EEEECCCCeEEEEee
Confidence 689999998876543
Done!