BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041237
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DGDG IDF EF
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 370
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 371 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 430
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 431 DGDGQVNYEEFVQMMT 446
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DGDG ++ EF+T
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 370
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 371 MMARKMK 377
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DGDG IDF EF
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 370
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 371 MMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 430
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 431 DGDGQVNYEEFVQMMT 446
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DGDG ++ EF+T
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 370
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 371 MMARKMK 377
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DGDG IDF EF
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 371
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 372 MMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 431
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 432 DGDGQVNYEEFVQMMT 447
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DGDG ++ EF+T
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 371
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 372 MMARKMK 378
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DGDG IDF EF
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 370
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 371 MMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 430
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 431 DGDGQVNYEEFVQMMT 446
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DGDG ++ EF+T
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 370
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 371 MMARKMK 377
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 79/134 (58%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 106 AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDG 165
+ +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D DG
Sbjct: 71 MMARKMKDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 130
Query: 166 DGMVNMDEFMTMMT 179
DG VN +EF+TMMT
Sbjct: 131 DGQVNYEEFVTMMT 144
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DGDG IDF EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 70
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 71 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 131 DGDGQVNYEEFVQMMT 146
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DGDG ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DGDG IDF EF
Sbjct: 303 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLI 362
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 363 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 422
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 423 DGDGQVNYEEFVQMMT 438
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DGDG ++ EF+
Sbjct: 303 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLI 362
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 363 MMARKMK 369
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 72 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 131
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+TMMT
Sbjct: 132 DGDGQVNYEEFVTMMT 147
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 72 MMARKMK 78
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 72 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 131
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+TMMT
Sbjct: 132 DGDGQVNYEEFVTMMT 147
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 72 MMARKMK 78
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 71 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+TMMT
Sbjct: 131 DGDGQVNYEEFVTMMT 146
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 71 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+TMMT
Sbjct: 131 DGDGQVNYEEFVTMMT 146
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 278 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 337
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 338 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 397
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 398 DGDGQVNYEEFVQMMT 413
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 278 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 337
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 338 MMARKMK 344
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 278 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 337
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 338 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 397
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 398 DGDGQVNYEEFVQMMT 413
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 278 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 337
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 338 MMARKMK 344
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 275 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 334
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 335 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 394
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 395 DGDGQVNYEEFVQMMT 410
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 275 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 334
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 335 MMARKMK 341
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 371
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 372 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 431
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 432 DGDGQVNYEEFVQMMT 447
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 371
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 372 MMARKMK 378
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 371
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 372 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 431
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 432 DGDGQVNYEEFVQMMT 447
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 371
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 372 MMARKMK 378
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 72 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRESDI 131
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+TMMT
Sbjct: 132 DGDGQVNYEEFVTMMT 147
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 72 MMARKMK 78
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 313 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 372
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 373 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 432
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 433 DGDGQVNYEEFVQMMT 448
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 313 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 372
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 373 MMARKMK 379
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 371
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 372 MMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 431
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 432 DGDGQVNYEEFVQMMT 447
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 371
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 372 MMARKMK 378
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 72 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDQMIREADI 131
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 132 DGDGQVNYEEFVQMMT 147
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 72 MMARKMK 78
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 72 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 131
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 132 DGDGQVNYEEFVQMMT 147
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 72 MMARKMK 78
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 15 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 74
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 75 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 134
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 135 DGDGQVNYEEFVQMMT 150
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 15 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 74
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 75 MMARKMK 81
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 68
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 69 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 128
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 129 DGDGQVNYEEFVQMMT 144
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 68
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 69 MMARKMK 75
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 72 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 131
Query: 164 DGDGMVNMDEFMTMMTRSM 182
DGDG VN +EF+ MMT +
Sbjct: 132 DGDGQVNYEEFVQMMTAKL 150
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 72 MMARKMK 78
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 7 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 66
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 67 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 126
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 127 DGDGQVNYEEFVQMMT 142
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 7 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 66
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 67 MMARKMK 73
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 72 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVDEMIREADI 131
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 132 DGDGQVNYEEFVQMMT 147
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 72 MMARKMK 78
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 71 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVDEMIREADI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 131 DGDGQVNYEEFVQMMT 146
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 13 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 72
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 73 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 132
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 133 DGDGQVNYEEFVQMMT 148
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 13 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 72
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 73 MMARKMK 79
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 17 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 76
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 77 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 136
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 137 DGDGQVNYEEFVQMMT 152
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 17 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 76
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 77 MMARKMK 83
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 71 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 131 DGDGQVNYEEFVQMMT 146
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 68
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 69 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 128
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 129 DGDGQVNYEEFVQMMT 144
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 68
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 69 MMARKMK 75
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 71 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 131 DGDGQVNYEEFVQMMT 146
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 8 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 67
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 68 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 127
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 128 DGDGQVNYEEFVQMMT 143
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 8 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 67
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 68 MMARKMK 74
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 68
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 69 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 128
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 129 DGDGQVNYEEFVQMMT 144
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 68
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 69 MMARKMK 75
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 10 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 69
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 70 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 129
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 130 DGDGQVNYEEFVQMMT 145
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 10 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 69
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 70 MMARKMK 76
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 72 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 131
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 132 DGDGQVNYEEFVQMMT 147
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 72 MMARKMK 78
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 72 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 131
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 132 DGDGQVNYEEFVQMMT 147
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 72 MMARKMK 78
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 371
Query: 106 AHKKGGGIRTMD----IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161
+ ++ D I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R
Sbjct: 372 MMARW--MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 162 DTDGDGMVNMDEFMTMMT 179
D DGDG VN +EF+ MMT
Sbjct: 430 DIDGDGQVNYEEFVQMMT 447
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 371
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 372 MMARWMK 378
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R +
Sbjct: 71 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREANI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ MMT
Sbjct: 131 DGDGQVNYEEFVQMMT 146
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 7 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 66
Query: 106 A-HKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTD 164
+K + +I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R + D
Sbjct: 67 MMARKMKDTDSEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREANID 126
Query: 165 GDGMVNMDEFMTMMT 179
GDG VN +EF+ MMT
Sbjct: 127 GDGQVNYEEFVQMMT 141
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 7 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 66
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 67 MMARKMK 73
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%)
Query: 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFK 101
D E++ F FD + +G IS E + ++ +G+ EV ++ + ++DGDG ++++
Sbjct: 75 TDSEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREANIDGDGQVNYE 134
Query: 102 EFME 105
EF++
Sbjct: 135 EFVQ 138
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF- 103
E K F FD + DG I+ E ++R++GQ +E+ + +D DG+G +DF EF
Sbjct: 10 TEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFL 69
Query: 104 -MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVD 162
M A K +I+ AFR FDK+ +G +SA E+ ++ RLGE S E+ +M+RA D
Sbjct: 70 GMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAAD 129
Query: 163 TDGDGMVNMDEFMTMMT 179
TDGDG VN +EF+ ++
Sbjct: 130 TDGDGQVNYEEFVRVLV 146
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
+ + + AF FDK+ DG I+ E+ ++R LG++ + + R M+ +D DG+G V+ E
Sbjct: 8 QVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPE 67
Query: 174 FMTMMTRSMK 183
F+ MM R MK
Sbjct: 68 FLGMMARKMK 77
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
+E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 70
Query: 105 E--AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVD 162
A K +++ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 71 NLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130
Query: 163 TDGDGMVNMDEFMTMM 178
DGDG +N DEF+ +M
Sbjct: 131 VDGDGQINYDEFVKVM 146
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71
Query: 177 MMTRSMK 183
+M R MK
Sbjct: 72 LMARKMK 78
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 8 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 67
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
A K +++ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 68 LMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV 127
Query: 164 DGDGMVNMDEFMTMM 178
DGDG VN +EF+ +M
Sbjct: 128 DGDGQVNYEEFVQVM 142
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+
Sbjct: 8 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 67
Query: 177 MMTRSMK 183
+M R MK
Sbjct: 68 LMARKMK 74
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 70
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
A K +++ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 71 LMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV 130
Query: 164 DGDGMVNMDEFMTMM 178
DGDG VN +EF+ +M
Sbjct: 131 DGDGQVNYEEFVQVM 145
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 70
Query: 177 MMTRSMK 183
+M R MK
Sbjct: 71 LMARKMK 77
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 70
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
A K ++ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 71 LMARKMKDTDSEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV 130
Query: 164 DGDGMVNMDEFMTMM 178
DGDG VN +EF+ +M
Sbjct: 131 DGDGQVNYEEFVQVM 145
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 70
Query: 177 MMTRSMK 183
+M R MK
Sbjct: 71 LMARKMK 77
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
+E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 70
Query: 105 E--AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVD 162
A K +++ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D
Sbjct: 71 NLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130
Query: 163 TDGDGMVNMDEFMTMM 178
DGDG +N +EF+ +M
Sbjct: 131 VDGDGQINYEEFVKVM 146
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71
Query: 177 MMTRSMK 183
+M R MK
Sbjct: 72 LMARKMK 78
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM- 104
E K F FD + DG I+ E + R++GQ +E+ VD DG+G IDF EF+
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFLT 71
Query: 105 -EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
A K +I+ AFR FDK+ +G ISA E+ + LGE + E+ + +R D
Sbjct: 72 XXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDQXIREADI 131
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ T
Sbjct: 132 DGDGQVNYEEFVQXXT 147
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 116 MDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175
+ + AF FDK+ DG I+ +E+ + R LG++ + + + + VD DG+G ++ EF+
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFL 70
Query: 176 TMMTRSMK 183
T R K
Sbjct: 71 TXXARKXK 78
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM- 104
E K F FD + DG I+ E + R++GQ +E+ VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFLT 70
Query: 105 -EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
A K +I+ AFR FDK+ +G ISA E+ + LGE + E+ + +R D
Sbjct: 71 XXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDEXIREADI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ T
Sbjct: 131 DGDGQVNYEEFVQXXT 146
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 116 MDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175
+ + AF FDK+ DG I+ +E+ + R LG++ + + + + VD DG+G ++ EF+
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFL 69
Query: 176 TMMTRSMK 183
T R K
Sbjct: 70 TXXARKXK 77
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM- 104
E K FD FD++ G IS E ++R +GQ E+ I + VD DG G IDF+EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 105 ----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRA 160
+ + G +++ FR FDKN DG I EE+ E+LR GE + ED +++
Sbjct: 81 MMVRQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKD 140
Query: 161 VDTDGDGMVNMDEFMTMM 178
D + DG ++ DEF+ MM
Sbjct: 141 SDKNNDGRIDFDEFLKMM 158
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
++AF FD + G IS +E+ ++R LG++ + E+ ++ VD DG G ++ +EF+ MM
Sbjct: 23 KAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMM 82
Query: 179 TRSMK 183
R MK
Sbjct: 83 VRQMK 87
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM- 104
E K FD FD++ G IS E ++R +GQ E+ I + VD DG G IDF+EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 105 ----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRA 160
+ + G ++ + FR FDKN DG I EE+ E+LR GE + ED +++
Sbjct: 81 MMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKD 140
Query: 161 VDTDGDGMVNMDEFMTMM 178
D + DG ++ DEF+ MM
Sbjct: 141 SDKNNDGRIDFDEFLKMM 158
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ ++AF FD + G IS +E+ ++R LG++ + E+ ++ VD DG G ++ +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 81 MMVRQMK 87
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM- 104
E K FD FD++ G IS E ++R +GQ E+ I + VD DG G IDF+EF+
Sbjct: 18 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 77
Query: 105 ----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRA 160
+ + G ++ + FR FDKN DG I EE+ E+LR GE + ED +++
Sbjct: 78 MMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKD 137
Query: 161 VDTDGDGMVNMDEFMTMM 178
D + DG ++ DEF+ MM
Sbjct: 138 SDKNNDGRIDFDEFLKMM 155
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ ++AF FD + G IS +E+ ++R LG++ + E+ ++ VD DG G ++ +EF+
Sbjct: 18 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 77
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 78 MMVRQMK 84
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM- 104
E K FD FD++ G IS E ++R +GQ E+ I + VD DG G IDF+EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 105 ----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRA 160
+ + G ++ FR FDKN DG I EE+ E+LR GE + ED +++
Sbjct: 81 MMVRQMKEDAKGKSEEELADCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKD 140
Query: 161 VDTDGDGMVNMDEFMTMM 178
D + DG ++ DEF+ MM
Sbjct: 141 SDKNNDGRIDFDEFLKMM 158
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
++AF FD + G IS +E+ ++R LG++ + E+ ++ VD DG G ++ +EF+ MM
Sbjct: 23 KAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMM 82
Query: 179 TRSMK 183
R MK
Sbjct: 83 VRQMK 87
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLS 70
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
A K ++ AF+ FD++ +G ISA E+ ++ LGE + ++ +M+R D
Sbjct: 71 LMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG +N +EF+ MM
Sbjct: 131 DGDGHINYEEFVRMMV 146
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF++
Sbjct: 11 EFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLS 70
Query: 177 MMTRSMK 183
+M R MK
Sbjct: 71 LMARKMK 77
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
Q E+ F FD + +G IS E + ++ +G+ EV ++ + D+DGDG I++
Sbjct: 79 QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINY 138
Query: 101 KEFM 104
+EF+
Sbjct: 139 EEFV 142
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLS 70
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
A K ++ AF+ FD++ +G ISA E+ ++ LGE + ++ +M+R D
Sbjct: 71 LMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG +N +EF+ MM
Sbjct: 131 DGDGHINYEEFVRMMV 146
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF++
Sbjct: 11 EFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLS 70
Query: 177 MMTRSMK 183
+M R MK
Sbjct: 71 LMARKMK 77
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
Q E+ F FD + +G IS E + ++ +G+ EV ++ + D+DGDG I++
Sbjct: 79 QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINY 138
Query: 101 KEFM 104
+EF+
Sbjct: 139 EEFV 142
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM- 104
E K FD FD++ G IS E ++R +GQ E+ I + VD DG G IDF+EF+
Sbjct: 18 EFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLV 77
Query: 105 ----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRA 160
+ + G ++ FR FD+N DG I AEE+ E+ R GE + E+ +++
Sbjct: 78 MMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKD 137
Query: 161 VDTDGDGMVNMDEFMTMM 178
D + DG ++ DEF+ MM
Sbjct: 138 GDKNNDGRIDFDEFLKMM 155
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ ++AF FD + G IS +E+ ++R LG++ + E+ ++ VD DG G ++ +EF+
Sbjct: 18 EFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLV 77
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 78 MMVRQMK 84
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM- 104
E K FD FD++ G IS E ++R +GQ E+ I + VD DG G IDF+EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 105 ----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRA 160
+ + G ++ + FR FDKN DG I EE+ E+LR GE ED +++
Sbjct: 81 MMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKD 140
Query: 161 VDTDGDGMVNMDEFMTMM 178
D + DG ++ DEF+ MM
Sbjct: 141 SDKNNDGRIDFDEFLKMM 158
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ ++AF FD + G IS +E+ ++R LG++ + E+ ++ VD DG G ++ +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 81 MMVRQMK 87
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM- 104
E K FD FD++ G IS E ++R +GQ E+ I + VD DG G IDF+EF+
Sbjct: 18 EFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLV 77
Query: 105 ----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRA 160
+ + G ++ FR FD+N DG I AEE+ E+ R GE + E+ +++
Sbjct: 78 MMVRQMKEDAKGKSEEELAELFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKD 137
Query: 161 VDTDGDGMVNMDEFMTMM 178
D + DG ++ DEF+ MM
Sbjct: 138 GDKNNDGRIDFDEFLKMM 155
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ ++AF FD + G IS +E+ ++R LG++ + E+ ++ VD DG G ++ +EF+
Sbjct: 18 EFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLV 77
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 78 MMVRQMK 84
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 76/136 (55%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ + ++R++GQ +E+ + V DG+G IDF +F
Sbjct: 312 EFKEAFSLFDKDGDGGITTKQLGTVMRSLGQNPTEAELQDMINEVGADGNGTIDFPQFLT 371
Query: 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
M A K +I+ AFR F K+ +G ISA ++ ++ LGE + E+ +M+R
Sbjct: 372 MMARKMKDTDSEEEIREAFRVFGKDGNGYISAAQLRHVMTNLGEKLTDEEVDEMIREAGI 431
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN ++F+ MMT
Sbjct: 432 DGDGQVNYEQFVQMMT 447
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +++ ++R LG++ + + + M+ V DG+G ++ +F+T
Sbjct: 312 EFKEAFSLFDKDGDGGITTKQLGTVMRSLGQNPTEAELQDMINEVGADGNGTIDFPQFLT 371
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 372 MMARKMK 378
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
+ E++ FD FD++ G I E K +RA+G E+ K+ +D DG G IDF+EF
Sbjct: 7 KQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEF 66
Query: 104 MEAHKKGGGIRTM--DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161
++ G R +I AFR FD ++ GKIS + + + + LGE+ + E+ ++M+
Sbjct: 67 LQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEA 126
Query: 162 DTDGDGMVNMDEFMTMMTRS 181
D DGDG VN +EF +M ++
Sbjct: 127 DRDGDGEVNEEEFFRIMKKT 146
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AF FD + G I A+E+ +R LG E+ +KM+ +D DG G ++ +EF+
Sbjct: 9 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQ 68
Query: 177 MMTRSM 182
MMT M
Sbjct: 69 MMTAKM 74
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME-- 105
K F FD + DG I+ E ++R++ Q E+ + VD DG+G I+F EF+
Sbjct: 13 KEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSLM 72
Query: 106 AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDG 165
A K +++ AF+ FDK+ +G ISA E+ ++ LGE + E+ +M++ D DG
Sbjct: 73 AKKVKDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDG 132
Query: 166 DGMVNMDEFMTMM 178
DG VN +EF+ MM
Sbjct: 133 DGQVNYEEFVKMM 145
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
+ +D + AF FDK+ DG I+ EE+ ++R L ++ + E+ + M+ VD DG+G + DE
Sbjct: 8 QIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDE 67
Query: 174 FMTMMTRSMK 183
F+++M + +K
Sbjct: 68 FLSLMAKKVK 77
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM- 104
E K F FD + DG I+ E + R++G +E+ VD DG+G I+F EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVXRSLGCNPTEAELQDXINEVDADGNGTINFPEFLT 70
Query: 105 -EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
A +I+ AFR FDK+ +G ISA E+ + LGE + E+ + +R D
Sbjct: 71 XXARCXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDEXIREADI 130
Query: 164 DGDGMVNMDEFMTMMT 179
DGDG VN +EF+ T
Sbjct: 131 DGDGQVNYEEFVQXXT 146
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 116 MDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175
+ + AF FDK+ DG I+ +E+ + R LG + + + + + VD DG+G +N EF+
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVXRSLGCNPTEAELQDXINEVDADGNGTINFPEFL 69
Query: 176 TMMTRSMK 183
T R K
Sbjct: 70 TXXARCXK 77
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Query: 21 KPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMI 80
K + S+R Q + + + E++ FD FD++ G I E K +RA+G
Sbjct: 4 KAKTVVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKK 63
Query: 81 SEVPKIFQVVDLDGDGFIDFKEF--MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEI 138
E+ K+ +D DG G IDF+EF M K G +I AFR FD ++ G I+ +++
Sbjct: 64 EEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDL 123
Query: 139 LEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181
+ + LGE+ + E+ ++M+ D + D ++ DEF+ +M ++
Sbjct: 124 RRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKT 166
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AF FD + G I A+E+ +R LG E+ +KM+ +D DG G ++ +EF+T
Sbjct: 29 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLT 88
Query: 177 MMTRSM 182
MMT M
Sbjct: 89 MMTAKM 94
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 13/169 (7%)
Query: 19 LRKPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQAS 78
++ P R S +DR SL P + E++ F FD +KDG I+ + +R +G
Sbjct: 5 VKYPLRNLSRKDR---SLRP---EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMP 58
Query: 79 MISEVPKIFQVVDLDGDGFIDFKEFME------AHKKGGGIRTMDIQSAFRTFDKNDDGK 132
E+ ++ Q ++++ G +DF +F+E + I +++ AFR FD N DG+
Sbjct: 59 TEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGE 118
Query: 133 ISAEEILEMLRR-LGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
IS E+ E +R+ LG D +++R VD +GDG V+ +EF+ MM+R
Sbjct: 119 ISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR 167
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + +G IS E ++R++G + +EV + +D+DG+ I+F EF+
Sbjct: 12 EFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLA 71
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
+ + ++ AF+ FDKN DG ISA E+ +L +GE + + M+R V +
Sbjct: 72 LMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV-S 130
Query: 164 DGDGMVNMDEFMTMMTRSMKLG 185
DG G +N+ +F ++++ G
Sbjct: 131 DGSGEINIQQFAALLSKGSSTG 152
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + +G IS E ++R++G + +EV + +D+DG+ I+F EF+
Sbjct: 11 EFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLA 70
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
+ + ++ AF+ FDKN DG ISA E+ +L +GE + + M+R V +
Sbjct: 71 LMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV-S 129
Query: 164 DGDGMVNMDEFMTMMTR 180
DG G +N+ +F ++++
Sbjct: 130 DGSGEINIQQFAALLSK 146
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
+ + + AF FDK+++G IS+ E+ ++R LG S S + ++ +D DG+ + E
Sbjct: 8 QIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSE 67
Query: 174 FMTMMTRSMK 183
F+ +M+R +K
Sbjct: 68 FLALMSRQLK 77
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + G IS E ++R++G + +EV + +D+DG+ I+F EF+
Sbjct: 12 EFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLA 71
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
+ + ++ AF+ FDKN DG ISA E+ +L +GE + + +M+R V +
Sbjct: 72 LMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV-S 130
Query: 164 DGDGMVNMDEFMTMMTR 180
DG G +N+ +F ++++
Sbjct: 131 DGSGEINIKQFAALLSK 147
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
+ + + AF FDK++ G ISA E+ ++R LG S S + ++ +D DG+ + E
Sbjct: 9 QIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSE 68
Query: 174 FMTMMTRSMK 183
F+ +M+R +K
Sbjct: 69 FLALMSRQLK 78
>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 7/142 (4%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F FD +KDG I+ + +R +G E+ ++ Q ++++ G +DF +F+E
Sbjct: 12 ELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVE 71
Query: 106 ------AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRR-LGESCSLEDCRKMV 158
+ I +++ AFR FD N DG+IS E+ E +R+ LG D +++
Sbjct: 72 LMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEII 131
Query: 159 RAVDTDGDGMVNMDEFMTMMTR 180
R VD +GDG V+ +EF+ MM+R
Sbjct: 132 RDVDLNGDGRVDFEEFVRMMSR 153
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F FD +KDG I+ + +R +G E+ ++ Q ++++ G +DF +F+E
Sbjct: 12 ELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVE 71
Query: 106 ------AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRR-LGESCSLEDCRKMV 158
+ I +++ AFR FD N DG+IS E+ E +R LG D +++
Sbjct: 72 LMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEII 131
Query: 159 RAVDTDGDGMVNMDEFMTMMTR 180
R VD +GDG V+ +EF+ MM+R
Sbjct: 132 RDVDLNGDGRVDFEEFVRMMSR 153
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM-----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
F+ G ++ FR FDKN DG I EE+ ML+ GE+ + +D ++
Sbjct: 77 FLVMMVRSMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 136
Query: 158 VRAVDTDGDGMVNMDEFMTMM 178
++ D + DG ++ DEF+ M
Sbjct: 137 MKDGDKNNDGRIDYDEFLEFM 157
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM RSMK
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMK 86
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
E+ +F FD N DG I E K +L+A G+ ++ ++ + D + DG ID+ EF
Sbjct: 94 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
Query: 104 MEAHK 108
+E K
Sbjct: 154 LEFMK 158
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM-----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
F+ G ++ FR FDKN DG I EE+ ML+ GE+ + +D ++
Sbjct: 77 FLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 136
Query: 158 VRAVDTDGDGMVNMDEFMTMM 178
++ D + DG ++ DEF+ M
Sbjct: 137 MKDGDKNNDGRIDYDEFLEFM 157
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM RSMK
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMK 86
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
E+ +F FD N DG I E K +L+A G+ ++ ++ + D + DG ID+ EF
Sbjct: 94 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
Query: 104 MEAHK 108
+E K
Sbjct: 154 LEFMK 158
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F +FD GKI+ E ++R +GQ +E+ + + + +G ++F EF
Sbjct: 11 EFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCG 70
Query: 106 AHKKGGGIRTMDIQS----AFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161
K +R D + AF+ FD++ DG IS E+ ++ LGE + E+ +M+R
Sbjct: 71 IMAKQ--MRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA 128
Query: 162 DTDGDGMVNMDEFMTMMTR 180
D DGDGM+N +EF+ M+++
Sbjct: 129 DFDGDGMINYEEFVWMISQ 147
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK GKI+ E+ ++R LG++ + + + ++ + + +G +N EF
Sbjct: 11 EFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCG 70
Query: 177 MMTRSMK 183
+M + M+
Sbjct: 71 IMAKQMR 77
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FMEAHKK-----GGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
F+ + G ++ FR FDKN DG I EE+ ML+ GE+ + +D ++
Sbjct: 77 FLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 136
Query: 158 VRAVDTDGDGMVNMDEFMTMM 178
++ D + DG ++ DEF+ M
Sbjct: 137 MKDGDKNNDGRIDYDEFLEFM 157
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM R MK
Sbjct: 32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMK 86
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
E+ +F FD N DG I E K +L+A G+ ++ ++ + D + DG ID+ EF
Sbjct: 94 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
Query: 104 MEAHK 108
+E K
Sbjct: 154 LEFMK 158
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM-----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
F+ G ++ FR +DKN DG I +E+ ML+ GE+ + +D ++
Sbjct: 77 FLVMMVRSMKDDSKGKSEEELSDLFRMWDKNADGYIDLDELKIMLQATGETITEDDIEEL 136
Query: 158 VRAVDTDGDGMVNMDEFMTMM 178
++ D + DG ++ DEF+ M
Sbjct: 137 MKDGDKNNDGRIDYDEFLEFM 157
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM RSMK
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMK 86
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
E+ +F +D N DG I E K +L+A G+ ++ ++ + D + DG ID+ EF
Sbjct: 94 EEELSDLFRMWDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
Query: 104 MEAHK 108
+E K
Sbjct: 154 LEFMK 158
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM-----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
F+ G ++ FR FDKN DG I +E+ ML+ GE+ + +D ++
Sbjct: 77 FLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEEL 136
Query: 158 VRAVDTDGDGMVNMDEFMTMM 178
++ D + DG ++ DE++ M
Sbjct: 137 MKDGDKNNDGRIDYDEWLEFM 157
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM RSMK
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMK 86
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
E+ +F FD N DG I E K +L+A G+ ++ ++ + D + DG ID+ E+
Sbjct: 94 EEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEW 153
Query: 104 MEAHK 108
+E K
Sbjct: 154 LEFMK 158
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
+ E++ FD FD++ G I E K +RA+G E+ K+ +D +G G ++F +F
Sbjct: 5 KQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDF 64
Query: 104 ME--AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161
+ K +I AF+ FD ++ GKIS + + + + LGE+ + E+ ++M+
Sbjct: 65 LTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEA 124
Query: 162 DTDGDGMVNMDEFMTMMTR 180
D DGDG V+ EF+ +M +
Sbjct: 125 DRDGDGEVSEQEFLRIMKK 143
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AF FD + G I +E+ +R LG E+ +KM+ +D +G G +N +F+T
Sbjct: 7 EIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLT 66
Query: 177 MMTRSM 182
+MT+ M
Sbjct: 67 VMTQKM 72
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM-----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
F+ G ++ FR DKN DG I +E+ ML+ GE+ + +D ++
Sbjct: 77 FLVMMVRSMKDDSKGKSEEELSDLFRMXDKNADGYIDLDELKIMLQATGETITEDDIEEL 136
Query: 158 VRAVDTDGDGMVNMDEFMTMM 178
++ D + DG ++ DEF+ M
Sbjct: 137 MKDGDKNNDGRIDYDEFLEFM 157
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM RSMK
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMK 86
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
E+ +F D N DG I E K +L+A G+ ++ ++ + D + DG ID+ EF
Sbjct: 94 EEELSDLFRMXDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 153
Query: 104 MEAHK 108
+E K
Sbjct: 154 LEFMK 158
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM-----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
F+ G ++ FR FDKN DG I +E+ ML+ GE+ + +D ++
Sbjct: 77 FLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEEL 136
Query: 158 VRAVDTDGDGMVNMDEFMTMM 178
++ D + DG ++ DE + M
Sbjct: 137 MKDGDKNNDGRIDYDEXLEFM 157
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM RSMK
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMK 86
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
E+ +F FD N DG I E K +L+A G+ ++ ++ + D + DG ID+ E
Sbjct: 94 EEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEX 153
Query: 104 MEAHK 108
+E K
Sbjct: 154 LEFMK 158
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
Query: 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
+K F+ D++K G+I+ E KA L+ +G SE+ + Q D+D G ID+KEF+ A
Sbjct: 29 LKEXFNXIDADKSGQITFEELKAGLKRVGANLKESEILDLXQAADVDNSGTIDYKEFIAA 88
Query: 107 HKKGGGIRTMD-IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCR--KMVRAVDT 163
I D + +AF FDK+ G I+ +E+ + G +ED R ++ R VD
Sbjct: 89 TLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG----VEDVRIEELXRDVDQ 144
Query: 164 DGDGMVNMDEFMTMMTRSMKLG 185
D DG ++ +EF+ + G
Sbjct: 145 DNDGRIDYNEFVAXXQKGSITG 166
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 16/155 (10%)
Query: 39 TFQADRNEMKRVFDRFDSNKDGKISQME----YKAILRAIGQ-ASMI------SEVPKIF 87
T Q + E+ +F + D N DG++ + E YK ++R GQ ASM+ EV ++
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 388
Query: 88 QVVDLDGDGFIDFKEFME-AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG 146
VD D +G+I++ EF+ A + + ++ AFR FD ++ GKIS+ E+ + G
Sbjct: 389 DAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATI---FG 445
Query: 147 ES-CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
S E + ++ VD + DG V+ DEF M+ +
Sbjct: 446 VSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK 480
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 16/155 (10%)
Query: 39 TFQADRNEMKRVFDRFDSNKDGKISQME----YKAILRAIGQ-ASMI------SEVPKIF 87
T Q + E+ +F + D N DG++ + E YK ++R GQ ASM+ EV ++
Sbjct: 352 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 411
Query: 88 QVVDLDGDGFIDFKEFME-AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG 146
VD D +G+I++ EF+ A + + ++ AFR FD ++ GKIS+ E+ + G
Sbjct: 412 DAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATI---FG 468
Query: 147 ES-CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
S E + ++ VD + DG V+ DEF M+ +
Sbjct: 469 VSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK 503
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 16/155 (10%)
Query: 39 TFQADRNEMKRVFDRFDSNKDGKISQME----YKAILRAIGQ-ASMI------SEVPKIF 87
T Q + E+ +F + D N DG++ + E YK ++R GQ ASM+ EV ++
Sbjct: 353 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 412
Query: 88 QVVDLDGDGFIDFKEFME-AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG 146
VD D +G+I++ EF+ A + + ++ AFR FD ++ GKIS+ E+ + G
Sbjct: 413 DAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATI---FG 469
Query: 147 ES-CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
S E + ++ VD + DG V+ DEF M+ +
Sbjct: 470 VSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK 504
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 33 NSSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDL 92
NS LL + + E+ F FD N DG + E K ++A+G E+ + D
Sbjct: 14 NSELL---EEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDS 70
Query: 93 DGDGFIDFKEFMEAHKKGGGIRTMD----IQSAFRTFDKNDDGKISAEEILEMLRRLGES 148
+G + + +F G I D I+ AF+ FD + GKIS + + + + LGE+
Sbjct: 71 EGRHLMKYDDFYIV--MGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGET 128
Query: 149 CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181
+ E+ R M+ D DGDG +N +EF+ + T S
Sbjct: 129 LTDEELRAMIEEFDLDGDGEINENEFIAICTDS 161
>pdb|1F71|A Chain A, Refined Solution Structure Of Calmodulin C-Terminal Domain
pdb|1J7P|A Chain A, Solution Structure Of Calcium Calmodulin C-Terminal Domain
pdb|2K3S|B Chain B, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
pdb|2KUH|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam C-Terminal Domain
pdb|2LLQ|A Chain A, Solution Nmr-Derived Structure Of Calmodulin C-Lobe Bound
With Er Alpha Peptide
Length = 67
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D DGDG VN +EF+
Sbjct: 3 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 62
Query: 177 MMT 179
MMT
Sbjct: 63 MMT 65
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F FD + +G IS E + ++ +G+ EV ++ + D+DGDG ++++EF++
Sbjct: 3 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 62
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 16/155 (10%)
Query: 39 TFQADRNEMKRVFDRFDSNKDGKISQME----YKAILRAIGQ------ASMI-SEVPKIF 87
T Q + E+ +F + D N DG++ + E YK + R GQ AS + EV ++
Sbjct: 329 TSQDETKELTAIFHKXDKNGDGQLDRAELIEGYKELXRXKGQDASXLDASAVEHEVDQVL 388
Query: 88 QVVDLDGDGFIDFKEFME-AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG 146
VD D +G+I++ EF+ A + + ++ AFR FD ++ GKIS+ E+ + G
Sbjct: 389 DAVDFDKNGYIEYSEFVTVAXDRKTLLSRERLERAFRXFDSDNSGKISSTELATI---FG 445
Query: 147 ES-CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
S E + ++ VD + DG V+ DEF + +
Sbjct: 446 VSDVDSETWKSVLSEVDKNNDGEVDFDEFQQXLLK 480
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E K F FD + +G IS E ++R++G + +EV + +D+DG+ I+F EF+
Sbjct: 11 EFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLA 70
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCS 150
+ + ++ AF+ FDKN DG ISA E+ +L +GE +
Sbjct: 71 LMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLT 117
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
+ + + AF FDK+++G IS+ E+ ++R LG S S + ++ +D DG+ + E
Sbjct: 8 QIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSE 67
Query: 174 FMTMMTRSMK 183
F+ +M+R +K
Sbjct: 68 FLALMSRQLK 77
>pdb|1ZOT|B Chain B, Crystal Structure Analysis Of The CyaaC-Cam With Pmeapp
Length = 69
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D DGDG VN +EF+
Sbjct: 6 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 65
Query: 177 MMT 179
MMT
Sbjct: 66 MMT 68
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F FD + +G IS E + ++ +G+ EV ++ + D+DGDG ++++EF++
Sbjct: 6 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 65
>pdb|1YRU|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin And 1mm
Calcium Chloride
pdb|1YRT|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin
Length = 74
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D DGDG VN +EF+
Sbjct: 10 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 69
Query: 177 MMT 179
MMT
Sbjct: 70 MMT 72
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F FD + +G IS E + ++ +G+ EV ++ + D+DGDG ++++EF++
Sbjct: 10 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 69
>pdb|1CMF|A Chain A, Nmr Solution Structure Of Apo Calmodulin Carboxy-Terminal
Domain
pdb|1CMG|A Chain A, Nmr Solution Structure Of Calcium-Loaded Calmodulin
Carboxy- Terminal Domain
Length = 73
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D DGDG VN +EF+
Sbjct: 9 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 68
Query: 177 MMT 179
MMT
Sbjct: 69 MMT 71
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F FD + +G IS E + ++ +G+ EV ++ + D+DGDG ++++EF++
Sbjct: 9 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 68
>pdb|1FW4|A Chain A, Crystal Structure Of E. Coli Fragment Tr2c From Calmodulin
To 1.7 A Resolution
pdb|2LQP|A Chain A, Nmr Solution Structure Of The Ca2+-Calmodulin C-Terminal
Domain In A Complex With A Peptide (Nscate) From The
L-Type Voltage-Gated Calcium Channel Alpha1c Subunit
Length = 71
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D DGDG VN +EF+
Sbjct: 7 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 66
Query: 177 MMT 179
MMT
Sbjct: 67 MMT 69
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F FD + +G IS E + ++ +G+ EV ++ + D+DGDG ++++EF++
Sbjct: 7 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 66
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
+K +F D++ G I+ E K L+ +G M SE+ + D+D G ID+ EF+ A
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 71
Query: 107 HKKGGGI-RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG-ESCSLEDCRKMVRAVDTD 164
+ R ++ SAF FDK+ G I+ +EI + + G + ++D M++ +D D
Sbjct: 72 TVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDD---MIKEIDQD 128
Query: 165 GDGMVNMDEFMTMMTR 180
DG ++ EF MM +
Sbjct: 129 NDGQIDYGEFAAMMRK 144
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
+E+K + D D +K G I E+ A + + + F D DG G+I E
Sbjct: 46 SEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQ 105
Query: 105 EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRR 144
+A K G+ + I + D+++DG+I E M+R+
Sbjct: 106 QACKD-FGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRK 144
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTM 177
++ F+ D ++ G I+ +E+ + L+R+G + + ++ A D D G ++ EF+
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 71
Query: 178 MTRSMKL 184
KL
Sbjct: 72 TVHLNKL 78
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF---MEA 106
F FD + G I+ E + + G + + + + +D D DG ID+ EF M
Sbjct: 87 AFSYFDKDGSGYITLDEIQQACKDFGLDDI--HIDDMIKEIDQDNDGQIDYGEFAAMMRK 144
Query: 107 HKKGGGI--RTM 116
K GGI RTM
Sbjct: 145 RKGNGGIGRRTM 156
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 9/153 (5%)
Query: 33 NSSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDL 92
NS LL + + E+ F FD N DG + E K +A+G E+ + D
Sbjct: 14 NSELL---EEQKQEIYEAFSLFDXNNDGFLDYHELKVAXKALGFELPKREILDLIDEYDS 70
Query: 93 DGDGFIDFKEFMEAHKKGGGIRTMD----IQSAFRTFDKNDDGKISAEEILEMLRRLGES 148
+G + +F G I D I+ AF+ FD + GKIS + + + + LGE+
Sbjct: 71 EGRHLXKYDDFYIV--XGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGET 128
Query: 149 CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181
+ E+ R + D DGDG +N +EF+ + T S
Sbjct: 129 LTDEELRAXIEEFDLDGDGEINENEFIAICTDS 161
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 21 KPSRLFSSRDRQNSSLLPTF-QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASM 79
K + + SS R+ S P + + E++ FD FD++ G I E K RA+G
Sbjct: 6 KKANMASSSQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAXRALGFEPK 65
Query: 80 ISEVPKIFQVVDLDGDGFIDFKEFM--EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEE 137
E+ K +D +G G +F +F+ K +I AF+ FD ++ GKIS +
Sbjct: 66 KEEIKKXISEIDKEGTGKXNFGDFLTVXTQKXSEKDTKEEILKAFKLFDDDETGKISFKN 125
Query: 138 ILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181
+ + + LGE+ + E+ ++ + D DGDG V+ EF+ + ++
Sbjct: 126 LKRVAKELGENLTDEELQEXIDEADRDGDGEVSEQEFLRIXKKT 169
>pdb|2BL0|B Chain B, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 145
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFK 101
A ++++ F FD + DGK+S E + LR++G+ +E+ I L+ F D
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKG--QLNAKEF-DLA 58
Query: 102 EFMEAHKKGGGIRTMDIQS-----AFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRK 156
F ++K I+T QS AFR DK +G I E+ ++L LG++ + + +
Sbjct: 59 TFKTVYRKP--IKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEE 116
Query: 157 MVRAVDTDGDGMVNMDEFMTMMTRSMKLG 185
+++ V GDG +N + F+ M+ L
Sbjct: 117 LMKEVSVSGDGAINYESFVDMLVTGYPLA 145
>pdb|2COL|B Chain B, Crystal Structure Analysis Of CyaaC-Cam With Pyrophosphate
Length = 67
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D DGDG VN +EF+
Sbjct: 6 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 65
Query: 177 MM 178
MM
Sbjct: 66 MM 67
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F FD + +G IS E + ++ +G+ EV ++ + D+DGDG ++++EF++
Sbjct: 6 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 65
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
++M+R+F RFD+N DGKIS E LR +G S EV ++ +D DGDGFIDF EF+
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGSTSA-DEVQRMMAEIDTDGDGFIDFNEFI 61
Query: 105 EAHKKGGGI 113
G+
Sbjct: 62 SFCNANPGL 70
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
D++ F+ FD N DGKIS E+ + LR LG S S ++ ++M+ +DTDGDG ++ +EF++
Sbjct: 4 DMERIFKRFDTNGDGKISLSELTDALRTLG-STSADEVQRMMAEIDTDGDGFIDFNEFIS 62
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
++M+R+F RFD+N DGKIS E LR +G S EV ++ +D DGDGFIDF EF+
Sbjct: 2 DDMERIFKRFDTNGDGKISLSELTDALRTLGSTSA-DEVQRMMAEIDTDGDGFIDFNEFI 60
Query: 105 EAHKKGGGI 113
G+
Sbjct: 61 SFCNANPGL 69
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
D++ F+ FD N DGKIS E+ + LR LG S S ++ ++M+ +DTDGDG ++ +EF++
Sbjct: 3 DMERIFKRFDTNGDGKISLSELTDALRTLG-STSADEVQRMMAEIDTDGDGFIDFNEFIS 61
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 46 EMKRVFDRFDSNKDGKISQME----YKAILRAIG---------QASMIS-EVPKIFQVVD 91
++ +F + D+N DG + + E Y +R G + S I ++ + ++D
Sbjct: 332 QLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLD 391
Query: 92 LDGDGFIDFKEFMEAHKKGGGIRTMD-IQSAFRTFDKNDDGKISAEEILEMLRRLGESCS 150
+DG G I++ EF+ + + + + ++ AF+ FDK+ GKIS +E+ ++ + S
Sbjct: 392 MDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQ 451
Query: 151 LEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
+E+ ++ VD + DG V+ +EF+ M+
Sbjct: 452 MEELESIIEQVDNNKDGEVDFNEFVEML 479
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 39 TFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFI 98
T R M+R F FD + GKIS E + + + E+ I + VD + DG +
Sbjct: 411 TILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEV 470
Query: 99 DFKEFME 105
DF EF+E
Sbjct: 471 DFNEFVE 477
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 44 RNEMKRVFDRFDS-----NKDGKISQMEYKA-ILRAIGQASMISE--VPKIFQVVDLDGD 95
+NE + D+ DS + DG S +EY I AI + ++S + + F++ D DG
Sbjct: 373 QNEGSTIEDQIDSLMPLLDMDGSGS-IEYSEFIASAIDRTILLSRERMERAFKMFDKDGS 431
Query: 96 GFIDFKEFMEAHKKG-GGIRTMDIQSAFRTFDKNDDGKISAEEILEMLR 143
G I KE + + I+ +++S D N DG++ E +EML+
Sbjct: 432 GKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQ 480
>pdb|2KZ2|A Chain A, Calmodulin, C-Terminal Domain, F92e Mutant
Length = 94
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AFR DK+ +G ISA E+ ++ LGE + E+ +M+R D DGDG VN +EF+
Sbjct: 30 EIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 89
Query: 177 MMT 179
MMT
Sbjct: 90 MMT 92
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 36/60 (60%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F D + +G IS E + ++ +G+ EV ++ + D+DGDG ++++EF++
Sbjct: 30 EIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 89
>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human N60d
Calmodulin Refined With Paramagnetism Based Strategy
Length = 79
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DGDG ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K F FD + DG I+ E ++R++GQ +E+ + VD DGDG IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFL 69
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 39 TFQADRNEMKRVFDRFDSNKDGKISQME----YKAI----LRAIGQASMISEVPKIFQVV 90
T Q + E+ +F D N DG++ + E Y + + + SEV I
Sbjct: 57 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA 116
Query: 91 DLDGDGFIDFKEFMEAHKKGGGIRTMD-IQSAFRTFDKNDDGKISAEEILEMLRRLGESC 149
D D +G+ID+ EF+ + + D ++SAF+ FD++ +GKIS +E+ + +
Sbjct: 117 DFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGL--DHL 174
Query: 150 SLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
+ ++M+ +D++ DG V+ +EF M+ +
Sbjct: 175 ESKTWKEMISGIDSNNDGDVDFEEFCKMIQK 205
>pdb|2RRT|A Chain A, Solution Structure Of Magnesium-Bound Form Of Calmodulin
C-Domain E104dE140D MUTANT
Length = 72
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AFR FDK+ +G ISA ++ ++ LGE + E+ +M+R D DGDG VN ++F+
Sbjct: 8 EIREAFRVFDKDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEDFVQ 67
Query: 177 MMT 179
MMT
Sbjct: 68 MMT 70
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F FD + +G IS + + ++ +G+ EV ++ + D+DGDG +++++F++
Sbjct: 8 EIREAFRVFDKDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEDFVQ 67
>pdb|2JNF|A Chain A, Solution Structure Of Fly Troponin C, Isoform F1
Length = 158
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 60 GKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF--MEAHKKGGGIRTMD 117
G++S + IL +G S + ++ D G+G IDF F + A G +
Sbjct: 29 GRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQ 88
Query: 118 IQ----SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
+Q AFR +DK +G IS + + E+L L E+ S ED M+ +D DG G V+ +E
Sbjct: 89 MQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEE 148
Query: 174 FMTMMT 179
FM +MT
Sbjct: 149 FMGVMT 154
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
+ E++ F +D +G IS + IL + + ++ + +D DG G +DF+EF
Sbjct: 90 QQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEF 149
Query: 104 MEAHKKG 110
M G
Sbjct: 150 MGVMTGG 156
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 118 IQSAFRTFDKND-DGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+++AFR F+ + G++S ++I +L LG + R+++ D G+G ++ D F
Sbjct: 15 LETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKI 74
Query: 177 MMTR 180
+ R
Sbjct: 75 IGAR 78
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 39 TFQADRNEMKRVFDRFDSNKDGKISQME----YKAI----LRAIGQASMISEVPKIFQVV 90
T Q + E+ +F D N DG++ + E Y + + + SEV I
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA 399
Query: 91 DLDGDGFIDFKEFMEAHKKGGGIRTMD-IQSAFRTFDKNDDGKISAEEILEMLRRLGESC 149
D D +G+ID+ EF+ + + D ++SAF+ FD++ +GKIS +E+ + +
Sbjct: 400 DFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGL--DHL 457
Query: 150 SLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
+ ++M+ +D++ DG V+ +EF M+ +
Sbjct: 458 ESKTWKEMISGIDSNNDGDVDFEEFCKMIQK 488
>pdb|2KN2|A Chain A, Solution Structure Of The C-Terminal Domain Of Soybean
Calmodulin Isoform 4 Fused With The Calmodulin-Binding
Domain Of Ntmkp1
Length = 92
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+++ AF+ FDK+ +G ISA E+ ++ LGE + E+ +M++ D DGDG VN +EF+
Sbjct: 10 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVK 69
Query: 177 MM 178
MM
Sbjct: 70 MM 71
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E+K F FD +++G IS E + ++ +G+ EV ++ + DLDGDG ++++EF+
Sbjct: 10 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFV 68
>pdb|2ROB|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 C-Terminal Domain
Length = 70
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+++ AF+ FDK+ +G ISA E+ ++ LGE + E+ +M++ D DGDG VN +EF+
Sbjct: 5 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVK 64
Query: 177 MM 178
MM
Sbjct: 65 MM 66
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E+K F FD +++G IS E + ++ +G+ EV ++ + DLDGDG ++++EF+
Sbjct: 5 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFV 63
>pdb|2LQC|A Chain A, Nmr Solution Structure Of A Ca2+-Calmodulin With A Binding
Motif (Nscate) Peptide From The N-Terminal Cytoplasmic
Domain Of The L-Type Voltage-Cated Calcium Channel
Alpha1c Subunit
Length = 77
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
>pdb|3UCT|A Chain A, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCT|B Chain B, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCW|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|B Chain B, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|C Chain C, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|D Chain D, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCY|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
Length = 79
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
>pdb|2RO9|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 C-Terminal Domain
Length = 69
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+++ AFR FDK+ +G ISA E+ ++ LGE + E+ +M+R D DGDG +N +EF+
Sbjct: 5 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 64
Query: 177 MM 178
+M
Sbjct: 65 VM 66
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E+K F FD +++G IS E + ++ +G+ EV ++ + D+DGDG I+++EF+
Sbjct: 5 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 63
>pdb|2LLO|A Chain A, Solution Nmr-Derived Structure Of Calmodulin N-Lobe Bound
With Er Alpha Peptide
Length = 80
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
>pdb|1GGW|A Chain A, Cdc4p From Schizosaccharomyces Pombe
Length = 140
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFK 101
D + K+ F FD + G+I + +LRA GQ ++E+ +I + + +D +
Sbjct: 2 TDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAE----VDME 57
Query: 102 EFMEAHKKGGGI----RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
+F++ + G + F+ FDK+ G I E+ +L LGE S E+ ++
Sbjct: 58 QFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDEL 117
Query: 158 VRAVDTDGDGMVNMDEFMTMM 178
++ V DGMVN +F+ M+
Sbjct: 118 LKGVPVK-DGMVNYHDFVQMI 137
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQV----VDLDGDGFI 98
D ++K F D G I++++ + L G +P F + +D DG G I
Sbjct: 53 DVQKLKAAFLHLDEEGKGNITKLQLRKGLERSGLM-----LPPNFDLLLDQIDSDGSGNI 107
Query: 99 DFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLED----- 153
D+ EF+ A + I AFR FD ++DG+I+ E+ +L + ++ +
Sbjct: 108 DYTEFLAAAIDRRQLSKKLIYCAFRVFDVDNDGEITTAELAHVLFNGNKRGNITERDVNQ 167
Query: 154 CRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182
+KM+R VD +GDG ++ EF MM ++
Sbjct: 168 VKKMIREVDKNGDGKIDFYEFSEMMKLTL 196
>pdb|3IFK|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
pdb|3IFK|B Chain B, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
Length = 90
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARKMK 77
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF-- 103
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 104 MEAHKKGGGIRTMDIQSAFR 123
M A K +I+ AFR
Sbjct: 71 MMARKMKDTDSEEEIREAFR 90
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
+ +D + AF FDK+ DG I+ EE+ ++R L ++ + E+ + M+ VD DG+G + DE
Sbjct: 8 QIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDE 67
Query: 174 FMTMMTRSMK 183
F+++M + +K
Sbjct: 68 FLSLMAKKVK 77
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
K F FD + DG I+ E ++R++ Q E+ + VD DG+G I+F EF+
Sbjct: 13 KEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFL 69
>pdb|2K7C|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 C-Domain
pdb|2K7D|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain
Length = 72
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 113 IRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL-GESCSLEDCRKMVRAVDTDGDGMVNM 171
I +++ AFR FD N DG+IS E+ E +R+L G D +++R VD +GDG V+
Sbjct: 4 IGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDF 63
Query: 172 DEFMTMMTR 180
+EF+ MM+R
Sbjct: 64 EEFVRMMSR 72
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAI-GQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E++ F FD+N DG+IS E + +R + G ++ +I + VDL+GDG +DF+EF+
Sbjct: 8 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 67
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 35/168 (20%)
Query: 35 SLLPTFQADRNEMKRVFDRFDSNKDGKISQME----YKAILRAIG-------QASMISEV 83
S L T + + E+ ++F + D+N DG++ + E Y+ +++ G + + +EV
Sbjct: 305 SKLTTLE-ETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEV 363
Query: 84 PKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQ---------SAFRTFDKNDDGKIS 134
I Q VD D +G+I++ EF+ MD Q +AF+ FD + GKI+
Sbjct: 364 DHILQSVDFDRNGYIEYSEFVTV--------CMDKQLLLSRERLLAAFQQFDSDGSGKIT 415
Query: 135 AEEILEMLRRLGESCSLED--CRKMVRAVDTDGDGMVNMDEFMTMMTR 180
EE L RL ++D ++++ D + DG V+ +EF+ MM +
Sbjct: 416 NEE----LGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 459
>pdb|1F70|A Chain A, Refined Solution Structure Of Calmodulin N-Terminal Domain
pdb|2PQ3|A Chain A, N-Terminal Calmodulin Zn-Trapped Intermediate
pdb|2KUG|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam N-Terminal Domain
Length = 76
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSM 182
MM R M
Sbjct: 71 MMARKM 76
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
>pdb|1J7O|A Chain A, Solution Structure Of Calcium-calmodulin N-terminal Domain
Length = 76
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSM 182
MM R M
Sbjct: 71 MMARKM 76
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 35/168 (20%)
Query: 35 SLLPTFQADRNEMKRVFDRFDSNKDGKISQME----YKAILRAIG-------QASMISEV 83
S L T + + E+ ++F + D+N DG++ + E Y+ +++ G + + +EV
Sbjct: 31 SKLTTLEETK-ELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEV 89
Query: 84 PKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQ---------SAFRTFDKNDDGKIS 134
I Q VD D +G+I++ EF+ MD Q +AF+ FD + GKI+
Sbjct: 90 DHILQSVDFDRNGYIEYSEFVTV--------CMDKQLLLSRERLLAAFQQFDSDGSGKIT 141
Query: 135 AEEILEMLRRLGESCSLED--CRKMVRAVDTDGDGMVNMDEFMTMMTR 180
EE L RL ++D ++++ D + DG V+ +EF+ MM +
Sbjct: 142 NEE----LGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 185
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 16/147 (10%)
Query: 43 DRNEMKRV---FDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFID 99
D +E+KR+ F + D + G +S E+ + L + Q ++ V IF D DG+G +D
Sbjct: 16 DADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPLVQRVIDIF---DTDGNGEVD 71
Query: 100 FKEFMEAHKKGG--GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCR-- 155
FKEF+E + G + ++ AFR +D + DG IS E+ ++L+ + +L+D +
Sbjct: 72 FKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM-VGNNLKDTQLQ 130
Query: 156 ----KMVRAVDTDGDGMVNMDEFMTMM 178
K + D DGDG ++ +EF ++
Sbjct: 131 QIVDKTIINADKDGDGRISFEEFCAVV 157
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 16/147 (10%)
Query: 43 DRNEMKRV---FDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFID 99
D +E+KR+ F + D + G +S E+ + L + Q ++ V IF D DG+G +D
Sbjct: 15 DADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPLVQRVIDIF---DTDGNGEVD 70
Query: 100 FKEFMEAHKKGG--GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCR-- 155
FKEF+E + G + ++ AFR +D + DG IS E+ ++L+ + +L+D +
Sbjct: 71 FKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM-VGNNLKDTQLQ 129
Query: 156 ----KMVRAVDTDGDGMVNMDEFMTMM 178
K + D DGDG ++ +EF ++
Sbjct: 130 QIVDKTIINADKDGDGRISFEEFCAVV 156
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 50 VFDRFDSNKDGKISQMEYKAIL---RAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
+F + D+N DG +S E KA + R I ++ IF+ +D+DG+G ID EF
Sbjct: 5 LFKQLDANGDGSVSYEEVKAFVSSKRPIKNEQLLQ---LIFKAIDIDGNGEIDLAEFT-- 59
Query: 107 HKKGGGIRTMDIQSA-------FRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159
K ++ D+ ++ D + DGK++ EE+ ++ G E +
Sbjct: 60 -KFAAAVKEQDLSDEKVGLKILYKLMDADGDGKLTKEEVTTFFKKFG----YEKVVDQIM 114
Query: 160 AVDTDGDGMVNMDEFMT 176
D +GDG + ++EF+
Sbjct: 115 KADANGDGYITLEEFLA 131
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
++ F+ D N DG +S EE+ + + + + + +A+D DG+G +++ EF
Sbjct: 3 EALFKQLDANGDGSVSYEEVKAFVSSKRPIKNEQLLQLIFKAIDIDGNGEIDLAEF 58
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 16/147 (10%)
Query: 43 DRNEMKRV---FDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFID 99
D +E+KR+ F + D + G +S E+ + L + Q ++ V IF D DG+G +D
Sbjct: 2 DADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPLVQRVIDIF---DTDGNGEVD 57
Query: 100 FKEFMEAHKKGG--GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCR-- 155
FKEF+E + G + ++ AFR +D + DG IS E+ ++L+ + +L+D +
Sbjct: 58 FKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM-VGNNLKDTQLQ 116
Query: 156 ----KMVRAVDTDGDGMVNMDEFMTMM 178
K + D DGDG ++ +EF ++
Sbjct: 117 QIVDKTIINADKDGDGRISFEEFCAVV 143
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 16/147 (10%)
Query: 43 DRNEMKRV---FDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFID 99
D +E+KR+ F + D + G +S E+ + L + Q ++ V IF D DG+G +D
Sbjct: 1 DADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPLVQRVIDIF---DTDGNGEVD 56
Query: 100 FKEFMEAHKKGG--GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCR-- 155
FKEF+E + G + ++ AFR +D + DG IS E+ ++L+ + +L+D +
Sbjct: 57 FKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM-VGNNLKDTQLQ 115
Query: 156 ----KMVRAVDTDGDGMVNMDEFMTMM 178
K + D DGDG ++ +EF ++
Sbjct: 116 QIVDKTIINADKDGDGRISFEEFCAVV 142
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 45/69 (65%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
+ +D + AF FDK+ DG I+ EE+ ++R L ++ + E+ + M+ VD DG+G + DE
Sbjct: 8 QIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDE 67
Query: 174 FMTMMTRSM 182
F+++M + +
Sbjct: 68 FLSLMAKKV 76
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107
K F FD + DG I+ E ++R++ Q E+ + VD DG+G I+F EF+
Sbjct: 13 KEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSLM 72
Query: 108 KK 109
K
Sbjct: 73 AK 74
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 20/136 (14%)
Query: 50 VFDRFDSNKDGKISQMEYKAIL---RAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
+F D N DG +S E KA + RAI ++ IF+ +D DG+G ID EF +
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLL---QLIFKSIDADGNGEIDQNEFAKF 61
Query: 107 HKKGGGIRTMD-------IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159
+ G I+ D ++ ++ D + DGK++ EE+ ++ G +E + V
Sbjct: 62 Y---GSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVM 114
Query: 160 AVDTDGDGMVNMDEFM 175
D +GDG + ++EF+
Sbjct: 115 KADANGDGYITLEEFL 130
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 42 ADRNE--MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISE----VPKIFQVVDLDGD 95
A +NE ++ +F D++ +G+I Q E+ +I Q +S+ + +++++D+DGD
Sbjct: 31 AIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI-QGQDLSDDKIGLKVLYKLMDVDGD 89
Query: 96 GFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILE 140
G + +E KK G + D N DG I+ EE LE
Sbjct: 90 GKLTKEEVTSFFKKHG---IEKVAEQVMKADANGDGYITLEEFLE 131
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
++ F+ D N DG +S EE+ + + + + + + +++D DG+G ++ +EF
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEF 58
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 20/136 (14%)
Query: 50 VFDRFDSNKDGKISQMEYKAIL---RAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
+F D N DG +S E KA + RAI ++ IF+ +D DG+G ID EF +
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLL---QLIFKSIDADGNGEIDQNEFAKF 61
Query: 107 HKKGGGIRTMD-------IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159
+ G I+ D ++ ++ D + DGK++ EE+ ++ G +E + V
Sbjct: 62 Y---GSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVM 114
Query: 160 AVDTDGDGMVNMDEFM 175
D +GDG + ++EF+
Sbjct: 115 KADANGDGYITLEEFL 130
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 42 ADRNE--MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISE----VPKIFQVVDLDGD 95
A +NE ++ +F D++ +G+I Q E+ +I Q +S+ + +++++D+DGD
Sbjct: 31 AIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI-QGQDLSDDKIGLKVLYKLMDVDGD 89
Query: 96 GFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILE 140
G + +E KK G + D N DG I+ EE LE
Sbjct: 90 GKLTKEEVTSFFKKHG---IEKVAEQVMKADANGDGYITLEEFLE 131
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
++ F+ D N DG +S EE+ + + + + + + +++D DG+G ++ +EF
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEF 58
>pdb|3B32|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-75
Length = 75
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTR 180
MM R
Sbjct: 71 MMAR 74
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
>pdb|1AK8|A Chain A, Nmr Solution Structure Of Cerium-Loaded Calmodulin Amino-
Terminal Domain (Ce2-Tr1c), 23 Structures
Length = 76
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 177 MMTR 180
MM R
Sbjct: 72 MMAR 75
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 70
>pdb|1OE9|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|B Chain B, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 151
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLD--GDGFIDFKEF 103
E K F+ FD DGKI + ++RA+GQ +EV K+ D +DF+ F
Sbjct: 11 EFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETF 70
Query: 104 ME-----AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMV 158
+ A +G G D FR FDK +GK+ E+ +L LGE + E+ + V
Sbjct: 71 LPMLQAVAKNRGQGTYE-DYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEV-ETV 128
Query: 159 RAVDTDGDGMVNMDEFM 175
A D +G +N + F+
Sbjct: 129 LAGHEDSNGCINYEAFL 145
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
D+ E +R+F RFD+N DGKIS E L+ +G + EV + +D DGDGFI F+E
Sbjct: 7 DKAERERIFKRFDANGDGKISAAELGEALKTLGSITP-DEVKHMMAEIDTDGDGFISFQE 65
Query: 103 FME 105
F +
Sbjct: 66 FTD 68
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 122 FRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
F+ FD N DGKISA E+ E L+ LG S + ++ + M+ +DTDGDG ++ EF
Sbjct: 15 FKRFDANGDGKISAAELGEALKTLG-SITPDEVKHMMAEIDTDGDGFISFQEF 66
>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand
Proteins: X-Ray Structure Of Ca2+-Saturated Double
Mutant Q41l-K75i Of N-Domain Of Calmodulin
Length = 78
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF +DK+ DG I+ +E+ ++R LG + + + + M+ VD DG+G ++ EF+T
Sbjct: 11 EFKEAFSLYDKDGDGTITTKELGTVMRSLGLNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 71 MMARIMK 77
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K F +D + DG I+ E ++R++G +E+ + VD DG+G IDF EF+
Sbjct: 11 EFKEAFSLYDKDGDGTITTKELGTVMRSLGLNPTEAELQDMINEVDADGNGTIDFPEFL 69
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 35 SLLPTFQADRNEMKRVFDRFDSNKDGKISQ---MEYKAILR----AIGQASMI-SEVPKI 86
S L T + +R E+ +F + D N DG++ + +E +LR +G+ + EV I
Sbjct: 346 SKLTTLE-ERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNI 404
Query: 87 FQVVDLDGDGFIDFKEFMEAHKKGGGIRTMD-IQSAFRTFDKNDDGKISAEEILEMLRRL 145
+ VD D +G+I++ EF+ + + + ++ AF FD + GKI+ EE+ +
Sbjct: 405 LKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLT 464
Query: 146 GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
S S + ++ D + D M++ DEF++MM +
Sbjct: 465 --SISEKTWNDVLGEADQNKDNMIDFDEFVSMMHK 497
>pdb|2CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 89
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM RSMK
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMK 86
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM 104
F+
Sbjct: 77 FL 78
>pdb|2KFX|T Chain T, Structure Of The N-Terminal Domain Of Human Cardiac
Troponin C Bound To Calcium Ion And To The Inhibitor W7
Length = 89
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM RSMK
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMK 86
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM 104
F+
Sbjct: 77 FL 78
>pdb|1WRK|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Orthrombic Crystal Form)
pdb|1WRK|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Orthrombic Crystal Form)
pdb|1WRL|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|E Chain E, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|F Chain F, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
Length = 88
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM RSMK
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMK 86
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM 104
F+
Sbjct: 77 FL 78
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
D+Q AFR FD++ DG I+ +E+ + LG+ E+ M+R D D DG VN +EF
Sbjct: 7 DLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFAR 66
Query: 177 MMTRS 181
M+ +
Sbjct: 67 MLAQE 71
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
+++ F FD + DG I+ E + + +GQ E+ + + D+D DG ++++EF
Sbjct: 6 EDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEF 64
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 149 CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179
LED + RA D DGDG + +DE M
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMA 33
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 19/147 (12%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
N ++ +F D + G +S E L+ IG + ++ ++ + +D + G I + +F+
Sbjct: 57 NNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFL 116
Query: 105 EAHKKGGGIRTMDIQS---------AFRTFDKNDDGKISAEEILEMLRRLGESCSLED-- 153
A T+D Q+ F+ FD + +GKIS EE+ + R L D
Sbjct: 117 AA--------TIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKA 168
Query: 154 CRKMVRAVDTDGDGMVNMDEFMTMMTR 180
+++ VD +GDG ++ EFM MM++
Sbjct: 169 IDSLLQEVDLNGDGEIDFHEFMLMMSK 195
>pdb|3MSE|B Chain B, Crystal Structure Of C-Terminal Domain Of Pf110239
Length = 180
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
+ +F + D+N +G +S E +L ++G ++ +I Q +D++ G I + EFM
Sbjct: 41 INELFYKLDTNHNGSLSHREIYTVLASVGIKKW--DINRILQALDINDRGNITYTEFMAG 98
Query: 107 HKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLR 143
+ I + +++AF DK++DG IS +I+ ++
Sbjct: 99 CYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVH 135
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 27/170 (15%)
Query: 31 RQNSSLLPTFQAD--------RNEMKRVFDRFDSN-KDGKISQMEYKAILR---AIGQAS 78
+QNS L P D +E++ + F + G +S E+K I G AS
Sbjct: 3 KQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDAS 62
Query: 79 MISEVPKIFQVVDLDGDGFIDFKEFMEA-HKKGGGIRTMDIQSAFRTFDKNDDGKISAEE 137
+E +F+ D +GDG IDF+EF+ A G ++ AF +D + +G IS E
Sbjct: 63 KFAE--HVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAE 120
Query: 138 ILEMLRRL------------GESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175
+LE+++ + ES + K+ R +DT+ DG ++++EF+
Sbjct: 121 MLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFI 170
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ-ASMISEVP-----------KIFQVVDL 92
++K F +D + +G IS+ E I++AI + S + ++P KIF+ +D
Sbjct: 99 QKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDT 158
Query: 93 DGDGFIDFKEFMEAHKKGGGI 113
+ DG + +EF+ K I
Sbjct: 159 NRDGKLSLEEFIRGAKSDPSI 179
>pdb|2RO8|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 N-Terminal Domain
Length = 79
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+ DG I+ +E+ ++R LG++ + + + M+ VD DG+G ++ EF+
Sbjct: 11 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 70
Query: 177 MMTRSMK 183
+M R MK
Sbjct: 71 LMARKMK 77
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
+E K F FD + DG I+ E ++R++GQ +E+ + VD DG+G IDF EF+
Sbjct: 10 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
>pdb|2KXW|A Chain A, Structure Of The C-Domain Fragment Of Apo Calmodulin Bound
To The Iq Motif Of Nav1.2
Length = 73
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179
AF+ FD++ +G ISA E+ ++ LGE + ++ +M+R D DGDG +N +EF+ MM
Sbjct: 12 EAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV 71
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
Q E+ F FD + +G IS E + ++ +G+ EV ++ + D+DGDG I++
Sbjct: 4 QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINY 63
Query: 101 KEFM 104
+EF+
Sbjct: 64 EEFV 67
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor
Domain Of Centrin
Length = 96
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AF FD + G I A+E+ +R LG E+ +KM+ +D DG G ++ +EF+T
Sbjct: 31 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLT 90
Query: 177 MMTRSM 182
MMT M
Sbjct: 91 MMTAKM 96
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 21 KPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMI 80
K + S+R Q + + + E++ FD FD++ G I E K +RA+G
Sbjct: 6 KAKTVVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKK 65
Query: 81 SEVPKIFQVVDLDGDGFIDFKEFM 104
E+ K+ +D DG G IDF+EF+
Sbjct: 66 EEIKKMISEIDKDGSGTIDFEEFL 89
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQV----VDLDGDGFI 98
D ++K F D + G I++ + K L G ++P F + +D DG G I
Sbjct: 50 DVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDG-----LKLPYNFDLLLDQIDSDGSGKI 104
Query: 99 DFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLED----- 153
D+ EF+ A + I AFR FD ++DG+I+ E+ +L + ++
Sbjct: 105 DYTEFIAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNR 164
Query: 154 CRKMVRAVDTDGDGMVNMDEFMTMM 178
++M+R VD + DG ++ EF MM
Sbjct: 165 VKRMIRDVDKNNDGKIDFHEFSEMM 189
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISE-VPKIFQVVDLDGDGFIDFKEFMEAH- 107
+ D+ DS+ GKI E+ I A+ + + + + F+V D+D DG I E AH
Sbjct: 92 LLDQIDSDGSGKIDYTEF--IAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAEL--AHI 147
Query: 108 ----KKGGGIRTMDIQSA---FRTFDKNDDGKISAEEILEMLR 143
K G I D+ R DKN+DGKI E EM++
Sbjct: 148 LYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK 190
>pdb|4GJG|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C Mutant D2n/v28i/l29q/g30d (niqd) In
Complex With Cadmium
Length = 89
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 117 DIQSAFRTFDKN-DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175
+ ++AF F ++ +DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+
Sbjct: 19 EFKAAFDIFIQDAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFL 78
Query: 176 TMMTRSMK 183
MM R MK
Sbjct: 79 VMMVRCMK 86
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 44 RNEMKRVFDRFDSN-KDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F + +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFIQDAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM 104
F+
Sbjct: 77 FL 78
>pdb|1R2U|A Chain A, Nmr Structure Of The N Domain Of Trout Cardiac Troponin C
At 30 C
pdb|1R6P|A Chain A, Nmr Structure Of The N-Terminal Domain Of Trout Cardiac
Troponin C At 7 C
Length = 89
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 119 QSAFRTFDKN-DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTM 177
++AF F ++ +DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ M
Sbjct: 21 KAAFDIFIQDAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVM 80
Query: 178 MTRSMK 183
M R MK
Sbjct: 81 MVRCMK 86
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 44 RNEMKRVFDRFDSN-KDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F + +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFIQDAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM 104
F+
Sbjct: 77 FL 78
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
D + F+ FD N DGKIS+ E+ + L+ LG S + ++ R+M+ +DTDGDG ++ DEF
Sbjct: 12 DRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEF 68
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGF 97
P ADR +R+F RFD+N DGKIS E L+ +G + EV ++ +D DGDGF
Sbjct: 7 PQDIADR---ERIFKRFDTNGDGKISSSELGDALKTLGSVTP-DEVRRMMAEIDTDGDGF 62
Query: 98 IDFKEFMEAHKKGGGI 113
I F EF + + G+
Sbjct: 63 ISFDEFTDFARANRGL 78
>pdb|3J04|C Chain C, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|F Chain F, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 148
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIF--------QVVDLDGDGF 97
E K F FD DGKI + ++RA+GQ +EV K+ + L + F
Sbjct: 8 EFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKTLKFEQF 67
Query: 98 IDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
+ + + +K G D R FDK +G + EI +L LGE + E+ ++
Sbjct: 68 LPMMQTIAKNKDQGCFE--DYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQL 125
Query: 158 VRAVDTDGDGMVNMDEFMTMM 178
V A D +G +N +E + M+
Sbjct: 126 V-AGHEDSNGCINYEELVRMV 145
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGM--VNM 171
+T + + AF+ FD+ DGKI + +++R LG++ + + K++ +D + +
Sbjct: 5 QTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKTLKF 64
Query: 172 DEFMTMM 178
++F+ MM
Sbjct: 65 EQFLPMM 71
>pdb|2K2A|A Chain A, Solution Structure Of The Apo C Terminal Domain Of
Lethoceru C Isoform F1
Length = 70
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+++ AFR +DK +G IS + + E+L L E+ S ED M+ +D DG G V+ +EFM
Sbjct: 4 ELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMG 63
Query: 177 MMT 179
+MT
Sbjct: 64 VMT 66
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
+ E++ F +D +G IS + IL + + ++ + +D DG G +DF+EF
Sbjct: 2 QQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEF 61
Query: 104 MEAHKKG 110
M G
Sbjct: 62 MGVMTGG 68
>pdb|4GJF|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C Mutant L29q In Complex With Cadmium
Length = 89
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 117 DIQSAFRTFDKN-DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175
+ ++AF F + +DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+
Sbjct: 19 EFKAAFDIFVQGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFL 78
Query: 176 TMMTRSMK 183
MM R MK
Sbjct: 79 VMMVRCMK 86
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 44 RNEMKRVFDRF-DSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVQGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM 104
F+
Sbjct: 77 FL 78
>pdb|1BR1|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|D Chain D, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|F Chain F, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|H Chain H, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|D Chain D, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|F Chain F, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|H Chain H, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1I84|T Chain T, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|W Chain W, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|3DTP|C Chain C, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|D Chain D, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 150
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIF--------QVVDLDGDGF 97
E K F FD DGKI + ++RA+GQ +EV K+ + L + F
Sbjct: 10 EFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKTLKFEQF 69
Query: 98 IDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
+ + + +K G D R FDK +G + EI +L LGE + E+ ++
Sbjct: 70 LPMMQTIAKNKDQGCFE--DYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQL 127
Query: 158 VRAVDTDGDGMVNMDEFMTMM 178
V A D +G +N +E + M+
Sbjct: 128 V-AGHEDSNGCINYEELVRMV 147
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGM--VNM 171
+T + + AF+ FD+ DGKI + +++R LG++ + + K++ +D + +
Sbjct: 7 QTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKTLKF 66
Query: 172 DEFMTMM 178
++F+ MM
Sbjct: 67 EQFLPMM 73
>pdb|1TRF|A Chain A, Solution Structure Of The Tr1c Fragment Of Skeletal Muscle
Troponin-C
Length = 76
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ ++AF FD + G IS +E+ ++R LG++ + E+ ++ VD DG G ++ +EF+
Sbjct: 10 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 69
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 70 MMVRQMK 76
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K FD FD++ G IS E ++R +GQ E+ I + VD DG G IDF+EF+
Sbjct: 10 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFL 68
>pdb|1AVS|A Chain A, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1AVS|B Chain B, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1BLQ|A Chain A, Structure And Interaction Site Of The Regulatory Domain Of
Troponin-C When Complexed With The 96-148 Region Of
Troponin-I, Nmr, 29 Structures
pdb|1SKT|A Chain A, Solution Structure Of Apo N-Domain Of Troponin C, Nmr, 40
Structures
pdb|1TNP|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1TNQ|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1ZAC|A Chain A, N-Domain Of Troponin C From Chicken Skeletal Muscle, Nmr,
Minimized Average Structure
Length = 90
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ ++AF FD + G IS +E+ ++R LG++ + E+ ++ VD DG G ++ +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 81 MMVRQMK 87
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K FD FD++ G IS E ++R +GQ E+ I + VD DG G IDF+EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFL 79
>pdb|1F54|A Chain A, Solution Structure Of The Apo N-Terminal Domain Of Yeast
Calmodulin
pdb|1F55|A Chain A, Solution Structure Of The Calcium Bound N-Terminal Domain
Of Yeast Calmodulin
Length = 77
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FDK+++G IS+ E+ ++R LG S S + ++ +D DG+ + EF+
Sbjct: 11 EFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLA 70
Query: 177 MMTRSMK 183
+M+R +K
Sbjct: 71 LMSRQLK 77
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K F FD + +G IS E ++R++G + +EV + +D+DG+ I+F EF+
Sbjct: 11 EFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFL 69
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
++ + FR FDKN DG I EE+ E+LR GE ED +++ D + DG ++ DEF+
Sbjct: 11 ELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLK 70
Query: 177 MM 178
MM
Sbjct: 71 MM 72
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E+ F FD N DG I E ILRA G+ + ++ + + D + DG IDF EF+
Sbjct: 11 ELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFL 69
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 81 SEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEIL 139
E+ F++ D + DGFID +E E + G + DI+ + DKN+DG+I +E L
Sbjct: 10 EELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFL 69
Query: 140 EMLR 143
+M+
Sbjct: 70 KMME 73
>pdb|1MXL|C Chain C, Structure Of Cardiac Troponin C-troponin I Complex
pdb|1LXF|C Chain C, Structure Of The Regulatory N-Domain Of Human Cardiac
Troponin C In Complex With Human Cardiac Troponin-I(147-
163) And Bepridil
pdb|1AP4|A Chain A, Regulatory Domain Of Human Cardiac Troponin C In The
Calcium-Saturated State, Nmr, 40 Structures
pdb|1SPY|A Chain A, Regulatory Domain Of Human Cardiac Troponin C In The
Calcium-Free State, Nmr, 40 Structures
pdb|2KRD|C Chain C, Solution Structure Of The Regulatory Domain Of Human
Cardiac C In Complex With The Switch Region Of Cardiac
Troponin I A
pdb|2L1R|A Chain A, The Structure Of The Calcium-Sensitizer, Dfbp-O, In
Complex With The N-Domain Of Troponin C And The Switch
Region Of Troponin I
pdb|3SD6|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C In Complex With Cadmium At 1.4
Resolution.
pdb|3SWB|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C In Complex With Cadmium At 1.7 A
Resolution
pdb|4GJE|A Chain A, Crystal Structure Of The Refolded Amino-terminal Domain Of
Human Cardiac Troponin C In Complex With Cadmium
Length = 89
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DEF+ MM R MK
Sbjct: 32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMK 86
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM 104
F+
Sbjct: 77 FL 78
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
Q + +V++ FD+NKDG + +E+ A + I Q M ++ F++ D DG+G ID
Sbjct: 53 QKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDK 112
Query: 101 KEFME---AHKKGGGIRTMD----IQSAFRTFDKNDDGKISAEEIL 139
E ++ A + G +T+ I F D N+DG+++ EE +
Sbjct: 113 NELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFI 158
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTM 177
I + TFD N DG + E + + + + + + + D DG+G ++ +E + M
Sbjct: 59 IDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDM 118
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAI----GQASMISE--VPKIFQVVDLDGDGFID 99
++K F +D++ +G I + E + A+ GQ ++ E + +F +D++ DG +
Sbjct: 94 KLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELT 153
Query: 100 FKEFMEAHKKGGGIRTMDIQSAFRTFD 126
+EF+ K + ++ +++FD
Sbjct: 154 LEEFINGMAKDQDL----LEIVYKSFD 176
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
++++F+ FD NKDG I MEY A L + + + ++ F++ D+DG+G ID E +
Sbjct: 54 VEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNI 113
Query: 107 HKKGGGI-RTMDIQSA-------FRTFDKNDDGKISAEEILEMLRR 144
K I R + +A F D N DG++S EE +E +++
Sbjct: 114 IKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQK 159
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTM 177
++ F TFD N DG I E + L + + + R + D DG+G ++ E + +
Sbjct: 54 VEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNI 113
Query: 178 M 178
+
Sbjct: 114 I 114
>pdb|2KGB|C Chain C, Nmr Solution Of The Regulatory Domain Cardiac
F77w-Troponin C In Complex With The Cardiac Troponin I
144-163 Switch Peptide
Length = 89
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 39/55 (70%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DE++ MM R MK
Sbjct: 32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEWLVMMVRCMK 86
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM 104
++
Sbjct: 77 WL 78
>pdb|2JXL|A Chain A, Solution Structure Of Cardiac N-Domain Troponin C Mutant
F77w-V82a
Length = 89
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 39/55 (70%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ +++R LG++ + E+ ++M+ VD DG G V+ DE++ MM R MK
Sbjct: 32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEWLVMMARCMK 86
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E ++R +GQ E+ ++ VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 103 FM 104
++
Sbjct: 77 WL 78
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 60 GKISQMEYKAIL-RAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA-HKKGGGIRTMD 117
G+I++ E++ I + +A + +F+ D + DG +DFKE++ A H G
Sbjct: 41 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQK 100
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
++ AF +D + +G IS E+LE++ + + S ED + + +T
Sbjct: 101 LEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENT 146
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
Q FR+FD N DG + +E + L + + D DG+G ++ +E + ++
Sbjct: 66 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
Query: 179 TRSMKL 184
T K+
Sbjct: 126 TAIFKM 131
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
+ VF FD+N DG + EY L ++ F + D+DG+G I E +E
Sbjct: 66 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLE 123
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 60 GKISQMEYKAIL-RAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA-HKKGGGIRTMD 117
G+I++ E++ I + +A + +F+ D + DG +DFKE++ A H G
Sbjct: 42 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQK 101
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
++ AF +D + +G IS E+LE++ + + S ED + + +T
Sbjct: 102 LEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENT 147
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
Q FR+FD N DG + +E + L + + D DG+G ++ +E + ++
Sbjct: 67 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 126
Query: 179 TRSMKL 184
T K+
Sbjct: 127 TAIFKM 132
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
+ VF FD+N DG + EY L ++ F + D+DG+G I E +E
Sbjct: 67 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLE 124
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 60 GKISQMEYKAIL-RAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA-HKKGGGIRTMD 117
G+I++ E++ I + +A + +F+ D + DG +DFKE++ A H G
Sbjct: 41 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQK 100
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
++ AF +D + +G IS E+LE++ + + S ED + + +T
Sbjct: 101 LEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENT 146
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
Q FR+FD N DG + +E + L + + D DG+G ++ +E + ++
Sbjct: 66 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
Query: 179 TRSMKL 184
T K+
Sbjct: 126 TAIFKM 131
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
+ VF FD+N DG + EY L ++ F + D+DG+G I E +E
Sbjct: 66 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLE 123
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 60 GKISQMEYKAIL-RAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA-HKKGGGIRTMD 117
G+I++ E++ I + +A + +F+ D + DG +DFKE++ A H G
Sbjct: 41 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQK 100
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
++ AF +D + +G IS E+LE++ + + S ED + + +T
Sbjct: 101 LEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENT 146
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
Q FR+FD N DG + +E + L + + D DG+G ++ +E + ++
Sbjct: 66 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
Query: 179 TRSMKL 184
T K+
Sbjct: 126 TAIFKM 131
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
+ VF FD+N DG + EY L ++ F + D+DG+G I E +E
Sbjct: 66 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLE 123
>pdb|1SMG|A Chain A, Calcium-Bound E41a Mutant Of The N-Domain Of Chicken
Troponin C, Nmr, 40 Structures
Length = 90
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ ++AF FD + G IS + + ++R LG++ + E+ ++ VD DG G ++ +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKALGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 81 MMVRQMK 87
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K FD FD++ G IS ++R +GQ E+ I + VD DG G IDF+EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKALGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFL 79
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVP--KIFQVVDLDGDGFID 99
AD++ + VF R D ++ G IS E + L + G + + V I + D + ++
Sbjct: 1 ADQSFLWNVFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDRENKAGVN 59
Query: 100 FKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159
F EF K D Q+ FRT+D+++ G I E+ + L G S + ++R
Sbjct: 60 FSEFTGVWKY-----ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIR 114
Query: 160 AVDTDGDGMVNMDEFM 175
D G G + D+F+
Sbjct: 115 KFDRQGRGQIAFDDFI 130
>pdb|2BL0|C Chain C, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 142
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
+E K F+ FDS + G I++ + +L+ G + ++F D G+G I F EF+
Sbjct: 6 SEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFL 65
Query: 105 EAHKKGGGIRTMD--IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVD 162
+ T + ++ AFRTFD G I + + L LG+ + + + +
Sbjct: 66 SMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE 125
Query: 163 TDGDGMVNMDEFMTMM 178
T+ G + D F+ M
Sbjct: 126 TE-KGQIRYDNFINTM 140
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF FD G I+ E + +L++ G +M D G+G + EF++
Sbjct: 7 EFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLS 66
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 67 MMGRRMK 73
>pdb|3DTP|E Chain E, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|F Chain F, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 196
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 31 RQNSSLLPTF-QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQA-------SMISE 82
R S++ F Q E K F D +KDG IS+ + +A ++G+ SM++E
Sbjct: 42 RSGSNVFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE 101
Query: 83 VPKIFQVVDLDGDGFIDFKEFME--AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILE 140
P G I+F F+ + G I +AF FD+ D GK E +
Sbjct: 102 AP-----------GPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGD-GKCKEETLKR 149
Query: 141 MLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
L GE S ++ + + DG+G++++ +F ++T+ K
Sbjct: 150 SLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILTKGAK 192
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 60 GKISQMEYKAIL-RAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA-HKKGGGIRTMD 117
G+I++ E++ I + +A + +F+ D + DG +DFK+++ A H G
Sbjct: 41 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQK 100
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
++ AF +D + +G IS E+LE++ + + S ED + + +T
Sbjct: 101 LEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENT 146
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
Q FR+FD N DG + ++ + L + + D DG+G ++ +E + ++
Sbjct: 66 QHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
Query: 179 TRSMKL 184
T K+
Sbjct: 126 TAIFKM 131
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
+ VF FD+N DG + +Y L ++ F + D+DG+G I E +E
Sbjct: 66 QHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLE 123
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 60 GKISQMEYKAIL-RAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA-HKKGGGIRTMD 117
G+I++ E++ I + +A + +F+ D + DG +DFK+++ A H G
Sbjct: 41 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQK 100
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
++ AF +D + +G IS E+LE++ + + S ED + + +T
Sbjct: 101 LEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENT 146
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
Q FR+FD N DG + ++ + L + + D DG+G ++ +E + ++
Sbjct: 66 QHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
Query: 179 TRSMKL 184
T K+
Sbjct: 126 TAIFKM 131
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
+ VF FD+N DG + +Y L ++ F + D+DG+G I E +E
Sbjct: 66 QHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLE 123
>pdb|1NPQ|A Chain A, Structure Of A Rhodamine-Labeled N-Domain Troponin C
Mutant (Ca2+ Saturated) In Complex With Skeletal
Troponin I 115- 131
Length = 90
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E K FD FD++ G IS E ++R +GQ E+ I VD DG G IDF+EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKCELDAIICEVDEDGSGTIDFEEFL 79
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ ++AF FD + G IS +E+ ++R LG++ + + ++ VD DG G ++ +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKCELDAIICEVDEDGSGTIDFEEFLV 80
Query: 177 MMTRSMK 183
MM R MK
Sbjct: 81 MMVRQMK 87
>pdb|1C7V|A Chain A, Nmr Solution Structure Of The Calcium-Bound C-Terminal
Domain (W81-S161) Of Calcium Vector Protein From
Amphioxus
pdb|1C7W|A Chain A, Nmr Solution Structure Of The Calcium-Bound C-Terminal
Domain (W81-S161) Of Calcium Vector Protein From
Amphioxus
Length = 81
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMI-SEVPKIFQVVDLDGDGFID 99
Q D E+ R F FD+N DG I E+K I++ +G+ + +EV + + D DG+G ID
Sbjct: 4 QDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVID 63
Query: 100 FKEFMEAHKK 109
EFM+ KK
Sbjct: 64 IPEFMDLIKK 73
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLG-ESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175
+I AF+ FD N DG I +E +++++G E + + + ++ D DG+G++++ EFM
Sbjct: 9 EILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFM 68
Query: 176 TMMTRS 181
++ +S
Sbjct: 69 DLIKKS 74
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 81 SEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG--GIRTMDIQSAFRTFDKNDDGKISAEEI 138
E+ + F+V D +GDG IDF EF +K G + +++ A + D++ +G I E
Sbjct: 8 EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEF 67
Query: 139 LEMLRR 144
++++++
Sbjct: 68 MDLIKK 73
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I AF+ FD ++ GKIS + + + + LGE+ + E+ ++M+ D DGDG V+ EF+
Sbjct: 12 EILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLR 71
Query: 177 MMTRS 181
+M ++
Sbjct: 72 IMKKT 76
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
+ E+ + F FD ++ GKIS K + + +G+ E+ ++ D DGDG + +EF
Sbjct: 10 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEF 69
Query: 104 MEAHKK 109
+ KK
Sbjct: 70 LRIMKK 75
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I AF+ FD ++ GKIS + + + + LGE+ + E+ ++M+ D DGDG V+ EF+
Sbjct: 22 EILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLR 81
Query: 177 MMTRS 181
+M ++
Sbjct: 82 IMKKT 86
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
+ E+ + F FD ++ GKIS K + + +G+ E+ ++ D DGDG + +EF
Sbjct: 20 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEF 79
Query: 104 MEAHKK 109
+ KK
Sbjct: 80 LRIMKK 85
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVP--KIFQVVDLDGDGFID 99
D++ + VF R D ++ G IS E + L + G + + V I + D + ++
Sbjct: 4 PDQSFLWNVFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDRENKAGVN 62
Query: 100 FKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159
F EF K D Q+ FRT+D+++ G I E+ + L G S + ++R
Sbjct: 63 FSEFTGVWKY-----ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIR 117
Query: 160 AVDTDGDGMVNMDEFM 175
D G G + D+F+
Sbjct: 118 KFDRQGRGQIAFDDFI 133
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVP--KIFQVVDLDGDGFIDF 100
D++ + VF R D ++ G IS E + L + G + + V I + D + ++F
Sbjct: 23 DQSFLWNVFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDRENKAGVNF 81
Query: 101 KEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRA 160
EF K D Q+ FRT+D+++ G I E+ + L G S + ++R
Sbjct: 82 SEFTGVWKY-----ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRK 136
Query: 161 VDTDGDGMVNMDEFM 175
D G G + D+F+
Sbjct: 137 FDRQGRGQIAFDDFI 151
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AF FD + G I +E+ +R LG E+ +KM+ +D +G G +N +F+T
Sbjct: 32 EIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLT 91
Query: 177 MMTRSM 182
+MT+ M
Sbjct: 92 VMTQKM 97
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 21 KPSRLFSSRDRQNSSLLPTF-QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASM 79
K + + SS R+ S P + + E++ FD FD++ G I E K +RA+G
Sbjct: 6 KKANMASSSQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPK 65
Query: 80 ISEVPKIFQVVDLDGDGFIDFKEFM 104
E+ K+ +D +G G ++F +F+
Sbjct: 66 KEEIKKMISEIDKEGTGKMNFGDFL 90
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVP--KIFQVVDLDGDGFIDF 100
D++ + VF R D ++ G IS E + L + G + + V I + D + ++F
Sbjct: 1 DQSFLWNVFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDRENKAGVNF 59
Query: 101 KEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRA 160
EF K D Q+ FRT+D+++ G I E+ + L G S + ++R
Sbjct: 60 SEFTGVWKY-----ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRK 114
Query: 161 VDTDGDGMVNMDEFM 175
D G G + D+F+
Sbjct: 115 FDRQGRGQIAFDDFI 129
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107
KRVF++FD NKDGK+S E++ + A ++ K F+ +D+DG+G ++ EF
Sbjct: 4 KRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCI 63
Query: 108 KK 109
+K
Sbjct: 64 EK 65
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 121 AFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
F FDKN DGK+S +E E+ + ED K +D DG+G +N DEF + + +
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65
Query: 181 SM 182
+
Sbjct: 66 ML 67
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
++ FR FDKN DG I EE+ ML+ GE+ + +D ++++ D + DG ++ DEF+
Sbjct: 6 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 65
Query: 177 MM 178
M
Sbjct: 66 FM 67
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E+ +F FD N DG I E K +L+A G+ ++ ++ + D + DG ID+ EF+E
Sbjct: 6 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 65
Query: 106 AHK 108
K
Sbjct: 66 FMK 68
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 81 SEVPKIFQVVDLDGDGFIDFKEF-MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEIL 139
E+ +F++ D + DG+ID +E + G I DI+ + DKN+DG+I +E L
Sbjct: 5 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 64
Query: 140 EMLR 143
E ++
Sbjct: 65 EFMK 68
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
++ FR FDKN DG I EE+ ML+ GE+ + +D ++++ D + DG ++ DEF+
Sbjct: 8 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 67
Query: 177 MM 178
M
Sbjct: 68 FM 69
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E+ +F FD N DG I E K +L+A G+ ++ ++ + D + DG ID+ EF+E
Sbjct: 8 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 67
Query: 106 AHK 108
K
Sbjct: 68 FMK 70
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 81 SEVPKIFQVVDLDGDGFIDFKEF-MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEIL 139
E+ +F++ D + DG+ID +E + G I DI+ + DKN+DG+I +E L
Sbjct: 7 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 66
Query: 140 EMLR 143
E ++
Sbjct: 67 EFMK 70
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVP--KIFQVVDLDGDGFID 99
D++ + VF R D ++ G IS E + L + G + + V I + D + ++
Sbjct: 23 PDQSFLWNVFQRVDKDRSGVISDNELQQAL-SNGTWTPFNPVTVRSIISMFDRENKAGVN 81
Query: 100 FKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159
F EF K D Q+ FRT+D+++ G I E+ + L G S + ++R
Sbjct: 82 FSEFTGVWKY-----ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIR 136
Query: 160 AVDTDGDGMVNMDEFM 175
D G G + D+F+
Sbjct: 137 KFDRQGRGQIAFDDFI 152
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
D E+ F D++ G IS E A L + G ++ K+ + D + G I F E
Sbjct: 25 DNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDE 84
Query: 103 FMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVD 162
F + H + ++ FR D + DG++ + E+ L G S + + ++R D
Sbjct: 85 FKDLHHF-----ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFD 139
Query: 163 TDGDGMVNMDEFMTM 177
G + D+++ +
Sbjct: 140 RQRRGSLGFDDYVEL 154
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
++ FR FDKN DG I EE+ ML+ GE+ + +D ++++ D + DG ++ DEF+
Sbjct: 11 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 70
Query: 177 MM 178
M
Sbjct: 71 FM 72
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E+ +F FD N DG I E K +L+A G+ ++ ++ + D + DG ID+ EF+E
Sbjct: 11 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 70
Query: 106 AHK 108
K
Sbjct: 71 FMK 73
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 81 SEVPKIFQVVDLDGDGFIDFKEF-MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEIL 139
E+ +F++ D + DG+ID +E + G I DI+ + DKN+DG+I +E L
Sbjct: 10 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 69
Query: 140 EMLR 143
E ++
Sbjct: 70 EFMK 73
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 41/62 (66%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AF+ FD++ +G IS +E+ +R LG + + +++ +D DGDG V+ +EF+T
Sbjct: 37 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVT 96
Query: 177 MM 178
++
Sbjct: 97 LL 98
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
E++ F FD + +G IS+ E +R++G E+ I Q +D+DGDG +DF+EF+
Sbjct: 37 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFV 95
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 80 ISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRT-MDIQSAFRTFDKNDDGKISAEEI 138
+ E+ + F+V D DG+GFI +E A + G + ++++ + D + DG++ EE
Sbjct: 35 LEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEF 94
Query: 139 LEML 142
+ +L
Sbjct: 95 VTLL 98
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 19/153 (12%)
Query: 42 ADRNEMKRVFDRF-DSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
AD +++ + +F + G + E+K + V +F+ D +GD IDF
Sbjct: 19 ADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDF 78
Query: 101 KEFMEA-HKKGGGIRTMDIQSAFRTFDKNDDGKISAEEIL---EMLRRLGESCSL----- 151
E++ A + G ++ F+ +DK+ +G I +E+L E + +L ++CS+
Sbjct: 79 LEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAE 138
Query: 152 ---------EDCRKMVRAVDTDGDGMVNMDEFM 175
E ++ VD +GDG ++++EF+
Sbjct: 139 QQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFV 171
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDG 96
+P + ++ +F FD+N D I +EY A L + + ++ ++ F++ D D +G
Sbjct: 51 VPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNG 110
Query: 97 FIDFKEFM-----------------EAHKKGGGIRTMD-IQSAFRTFDKNDDGKISAEEI 138
ID +E + EA ++G + + + F D+N DG++S E
Sbjct: 111 CIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEF 170
Query: 139 LEMLRR 144
+E RR
Sbjct: 171 VEGARR 176
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAI--------------GQASMISE---VPKIF 87
+++K F +D +++G I + E I+ +I Q +++ V +IF
Sbjct: 95 HKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIF 154
Query: 88 QVVDLDGDGFIDFKEFMEAHKKGGGIRTM 116
+VD +GDG + EF+E ++ + M
Sbjct: 155 LLVDENGDGQLSLNEFVEGARRDKWVMKM 183
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVP--KIFQVVDLDGDGFID 99
D++ + VF R D ++ G IS E + L + G + + V I + D + ++
Sbjct: 4 PDQSFLWNVFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDRENKAGVN 62
Query: 100 FKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159
F EF K D Q+ FRT+D+++ G I E+ + L G S + ++R
Sbjct: 63 FSEFTGVWKY-----ITDWQNVFRTYDRDNSGMIDKNELKQALSGAGYRLSDQFHDILIR 117
Query: 160 AVDTDGDGMVNMDEFM 175
D G G + D+F+
Sbjct: 118 KFDRQGRGQIAFDDFI 133
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVP--KIFQVVDLDGDGFID 99
AD++ + VF R D ++ G IS E + L + G + + V I + D + ++
Sbjct: 1 ADQSFLWNVFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDRENKAGVN 59
Query: 100 FKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159
F EF K D Q+ FRT+D+++ G I E+ + L S D ++R
Sbjct: 60 FSEFTGVWKY-----ITDWQNVFRTYDRDNSGMIDKNELKQALSGYRLSDQFHDI--LIR 112
Query: 160 AVDTDGDGMVNMDEFM 175
D G G + D+F+
Sbjct: 113 KFDRQGRGQIAFDDFI 128
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
++ FR FDKN DG I EE+ ML+ GE+ + +D ++++ D + DG ++ DEF+
Sbjct: 16 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 75
Query: 177 MM 178
M
Sbjct: 76 FM 77
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E+ +F FD N DG I E K +L+A G+ ++ ++ + D + DG ID+ EF+E
Sbjct: 16 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 75
Query: 106 AHK 108
K
Sbjct: 76 FMK 78
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 81 SEVPKIFQVVDLDGDGFIDFKEF-MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEIL 139
E+ +F++ D + DG+ID +E + G I DI+ + DKN+DG+I +E L
Sbjct: 15 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 74
Query: 140 EMLR 143
E ++
Sbjct: 75 EFMK 78
>pdb|3J04|B Chain B, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|E Chain E, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 143
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 24/154 (15%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ-------ASMISEVPKIFQVVDLD 93
Q+ E K F+ D N+DG I + + +L ++G+ M+SE P
Sbjct: 3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP--------- 53
Query: 94 GDGFIDFKEFMEAH-KKGGGIRTMD-IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSL 151
G I+F F+ +K G D I++AF FD+ G I + + E+L +G+ +
Sbjct: 54 --GPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTD 111
Query: 152 EDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMKLG 185
E+ +M R D G N EF TR +K G
Sbjct: 112 EEVDEMYREAPIDKKGNFNYVEF----TRILKHG 141
>pdb|2HF5|A Chain A, The Structure And Function Of A Novel Two-Site Calcium-
Binding Fragment Of Calmodulin
Length = 68
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 81 SEVPKIFQVVDLDGDGFIDFKEF--MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEI 138
+E+ + VD DG+G IDF EF M A K +I+ AFR FDK+ +G ISA E+
Sbjct: 1 AELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL 60
Query: 139 LEMLRRLG 146
++ LG
Sbjct: 61 RHVMTNLG 68
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 153 DCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+ + M+ VD DG+G ++ EF+TMM R MK
Sbjct: 2 ELQDMINEVDADGNGTIDFPEFLTMMARKMK 32
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEML-RRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175
++Q D + +G I E L M+ R++ ++ S E+ R+ R D DG+G ++ E
Sbjct: 2 ELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELR 61
Query: 176 TMMT 179
+MT
Sbjct: 62 HVMT 65
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 85 KIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEML- 142
+F V D D +GFI F+EF+ G + AF +D N DG I+ +E+L ++
Sbjct: 67 HLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVA 126
Query: 143 ---RRLGESCSLED--------CRKMVRAVDTDGDGMVNMDEF 174
+ +G +L + +K+ + +D + DG + +DEF
Sbjct: 127 SVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEF 169
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 40 FQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFID 99
F + + +F FD + +G I E+ +L + ++ ++ F++ DL+ DG+I
Sbjct: 58 FGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYIT 117
Query: 100 FKEFM----EAHKKGGGIRTMD---------IQSAFRTFDKNDDGKISAEEILE 140
F E + +K G + T++ ++ F+ DKN+DG I+ +E E
Sbjct: 118 FDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFRE 171
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 122 FRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181
F FDK+++G I EE + +L E D + DG + DE +T++
Sbjct: 69 FTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASV 128
Query: 182 MKL 184
K+
Sbjct: 129 YKM 131
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQ--ASMIS----------EVPKIFQVVDLD 93
++ F+ +D N DG I+ E I+ ++ + SM++ V KIF+++D +
Sbjct: 100 KLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKN 159
Query: 94 GDGFIDFKEFMEAHK 108
DG+I EF E K
Sbjct: 160 EDGYITLDEFREGSK 174
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 29/111 (26%)
Query: 86 IFQVVDLDGDGFIDFKEFM---------EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAE 136
+F D DG+G I F++F+ H+K ++ AF +D N DG I+ E
Sbjct: 134 LFNAFDADGNGAIHFEDFVVGLSILLRGTVHEK--------LKWAFNLYDINKDGCITKE 185
Query: 137 EILEMLRR------------LGESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175
E+L +++ L E LE + + +D + DG+V +DEF+
Sbjct: 186 EMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFL 236
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIG------------QASMISEVPKIFQVVD 91
++K F+ +D NKDG I++ E AI+++I + + + V + FQ +D
Sbjct: 164 HEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMD 223
Query: 92 LDGDGFIDFKEFMEAHKKGGGI 113
+ DG + EF+E +K I
Sbjct: 224 RNQDGVVTIDEFLETCQKDENI 245
>pdb|2JOJ|A Chain A, Nmr Solution Structure Of N-Terminal Domain Of Euplotes
Octocarinatus Centrin
Length = 77
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
+ E+K FD FD+NK G I E K +RA+G E+ ++ D +G+G+I F +F
Sbjct: 6 KQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDF 65
Query: 104 ME 105
++
Sbjct: 66 LD 67
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I+ AF FD N G I E+ +R LG + +++ D +G+G + D+F+
Sbjct: 8 EIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLD 67
Query: 177 MMTRSMK 183
+MT +K
Sbjct: 68 IMTEKIK 74
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 60 GKISQMEYKAIL-RAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA-HKKGGGIRTMD 117
G+I+Q ++++I + + +F+ D + DG +DFKE++ A H G
Sbjct: 49 GRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHXTTAGKTNQK 108
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCR 155
++ AF +D + +G IS E+LE++ + + + ED +
Sbjct: 109 LEWAFSLYDVDGNGTISKNEVLEIVXAIFKXITPEDVK 146
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME-A 106
+ VF FDSN DG + EY L ++ F + D+DG+G I E +E
Sbjct: 74 QHVFRSFDSNLDGTLDFKEYVIALHXTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 133
Query: 107 HKKGGGIRTMDI--------------QSAFRTFDKNDDGKISAEEILE 140
I D+ + ++ F KNDD K++ +E +E
Sbjct: 134 XAIFKXITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIE 181
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
Q FR+FD N DG + +E + L + + D DG+G ++ +E + ++
Sbjct: 74 QHVFRSFDSNLDGTLDFKEYVIALHXTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 133
Query: 179 TRSMK 183
K
Sbjct: 134 XAIFK 138
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The Cardiac
Regulatory Protein Troponin C
Length = 72
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
++ FR FDKN DG I +E+ ML+ GE+ + +D ++++ D + DG ++ DEF+
Sbjct: 7 ELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 66
Query: 177 MM 178
M
Sbjct: 67 FM 68
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E+ +F FD N DG I E K +L+A G+ ++ ++ + D + DG ID+ EF+E
Sbjct: 7 ELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 66
Query: 106 AHK 108
K
Sbjct: 67 FMK 69
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 81 SEVPKIFQVVDLDGDGFIDFKEF-MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEIL 139
E+ +F++ D + DG+ID E + G I DI+ + DKN+DG+I +E L
Sbjct: 6 EELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 65
Query: 140 EMLR 143
E ++
Sbjct: 66 EFMK 69
>pdb|2LC5|A Chain A, Calmodulin-Like Protein From Entamoeba Histolytica:
Solution Structure And Calcium-Binding Properties Of A
Partially Folded Protein
Length = 85
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 40/62 (64%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ + AF+ FDK++D K++AEE+ ++R LG + + + ++V+ D D G + + F+T
Sbjct: 15 EYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLT 74
Query: 177 MM 178
+M
Sbjct: 75 IM 76
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
++ E K F FD + D K++ E ++RA+G ++ +I + D D G D +
Sbjct: 12 EQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQET 71
Query: 103 FM 104
F+
Sbjct: 72 FL 73
>pdb|2MYS|C Chain C, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 149
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLD--GDGFI 98
+A ++ K F FD D KI+ + I RA+GQ +E+ KI + I
Sbjct: 4 KAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAI 63
Query: 99 DFKEFME-----AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLED 153
F+EF+ A+ K G D R FDK +G + E+ +L LGE + E+
Sbjct: 64 TFEEFLPMLQAAANNKDQGTFE-DFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEE 122
Query: 154 CRKMVRAVDTDGDGMVNMDEFM 175
++++ + D +G +N + F+
Sbjct: 123 VEELMKGQE-DSNGCINYEAFV 143
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTD--GDGMVNMDEF 174
D + AF FD+ D KI+A ++ ++ R LG++ + + K++ + + +EF
Sbjct: 9 DFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEF 68
Query: 175 MTMM 178
+ M+
Sbjct: 69 LPML 72
>pdb|1M8Q|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|U Chain U, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 147
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLD--GDGFI 98
+A ++ K F FD D KI+ + I RA+GQ +E+ KI + I
Sbjct: 2 KAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAI 61
Query: 99 DFKEFME-----AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLED 153
F+EF+ A+ K G D R FDK +G + E+ +L LGE + E+
Sbjct: 62 TFEEFLPMLQAAANNKDQGTFE-DFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEE 120
Query: 154 CRKMVRAVDTDGDGMVNMDEFM 175
++++ + D +G +N + F+
Sbjct: 121 VEELMKGQE-DSNGCINYEAFV 141
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTD--GDGMVNMDEF 174
D + AF FD+ D KI+A ++ ++ R LG++ + + K++ + + +EF
Sbjct: 7 DFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEF 66
Query: 175 MTMM 178
+ M+
Sbjct: 67 LPML 70
>pdb|2W4A|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 145
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLD--GDGFIDFKE 102
N+ K F FD D KI+ + I+RA+GQ +E+ KI + I F+E
Sbjct: 4 NDFKEAFLLFDRTGDAKITLSQVGDIVRALGQNPTNAEINKILGNPSKEEMNAKKITFEE 63
Query: 103 FME-----AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM 157
F+ A+ K G D R FDK +G + E+ +L LGE + E+ ++
Sbjct: 64 FLPMLQAAANNKDQGTFE-DFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEEL 122
Query: 158 VRAVDTDGDGMVNMDEFM 175
++ + D +G +N + F+
Sbjct: 123 MKGQE-DSNGCINYEAFV 139
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 41 QADRNEMKRVFDRFD--SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFI 98
Q + +++K VF+ FD +DG + + + R +G +V + + G+ +
Sbjct: 5 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKM-GEKSL 63
Query: 99 DFKEFMEAHKKGGGIRTM------DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE 152
F+EF+ A++ G+ D AF+TFD+ G IS E+ +L LGE S E
Sbjct: 64 PFEEFLPAYE---GLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 120
Query: 153 DCRKMVRAVD--TDGDGMVNMDEFM 175
D ++++ D D +G V ++F+
Sbjct: 121 DVDEIIKLTDLQEDLEGNVKYEDFV 145
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 30/180 (16%)
Query: 13 ISKNKFLRKPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILR 72
+SKN FL +R S +L F+ E V F+ NKDG
Sbjct: 447 LSKNFFLTNRARERSDTFINLREVLNRFKLPPGEYILVPSTFEPNKDGDFC--------- 497
Query: 73 AIGQASMISEVPKIFQVVDLDGDGFIDFKEF-MEAHKKGGGIRTMDIQSAFRTFDKNDDG 131
+ SE +Q VD + + + +EF + G+R + Q A +D
Sbjct: 498 ----IRVFSEKKADYQAVDDEIEA--NLEEFDISEDDIDDGVRRLFAQLA------GEDA 545
Query: 132 KISAEEILEMLRRL--------GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+ISA E+ +LRR+ + S+E C+ MV +D+DG G + + EF + T+ K
Sbjct: 546 EISAFELQTILRRVLAKRQDIKSDGFSIETCKIMVDMLDSDGSGKLGLKEFYILWTKIQK 605
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107
K + D DS+ GK+ E+ + + I + KI++ +D+D G ++ E +A
Sbjct: 577 KIMVDMLDSDGSGKLGLKEFYILW------TKIQKYQKIYREIDVDRSGTMNSYEMRKAL 630
Query: 108 KKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDG 167
++ G + +D I + + L R LE K+ + +D + G
Sbjct: 631 EEAGFKMPCQLHQVIVARFADDQLIIDFDNFVRCLVR------LETLFKIFKQLDPENTG 684
Query: 168 MVNMD 172
+ +D
Sbjct: 685 TIELD 689
>pdb|1M46|A Chain A, Crystal Structure Of Mlc1p Bound To Iq4 Of Myo2p, A Class
V Myosin
pdb|1M45|A Chain A, Crystal Structure Of Mlc1p Bound To Iq2 Of Myo2p, A Class
V Myosin
pdb|1N2D|A Chain A, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
pdb|1N2D|B Chain B, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
Length = 148
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQV---------VDLDG-DGF 97
K +F FD G I++ LRAIG V I + LD G
Sbjct: 7 KDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGL 66
Query: 98 IDFKE-FMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRK 156
I+ E ++A K +T D AF+ FDK GK+S ++ ML LGE + + +
Sbjct: 67 IEVNEKELDATTKA---KTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDE 123
Query: 157 MVRAVDTDGDGMVNMDEFMTMMTR 180
+++ V+ D +G ++ +F+ + R
Sbjct: 124 LLKGVEVDSNGEIDYKKFIEDVLR 147
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGF 97
T +A + + F FD GK+S + + +L +G+ +EV ++ + V++D +G
Sbjct: 76 ATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGE 135
Query: 98 IDFKEFME 105
ID+K+F+E
Sbjct: 136 IDYKKFIE 143
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 41 QADRNEMKRVFDRFD--SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFI 98
Q + +++K VF+ FD +DG + + + R +G +V + + G+ +
Sbjct: 5 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKM-GEKSL 63
Query: 99 DFKEFMEAHKKGGGIRTM------DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE 152
F+EF+ A++ G+ D AF+TFD+ G IS E+ +L LGE S E
Sbjct: 64 PFEEFLPAYE---GLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 120
Query: 153 DCRKMVRAVD--TDGDGMVNMDEFM 175
D ++++ D D +G V ++F+
Sbjct: 121 DVDEIIKLTDLQEDLEGNVKYEDFV 145
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 41 QADRNEMKRVFDRFD--SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFI 98
Q + +++K VF+ FD +DG + + + R +G +V + + G+ +
Sbjct: 3 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKM-GEKSL 61
Query: 99 DFKEFMEAHKKGGGIRTM------DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE 152
F+EF+ A++ G+ D AF+TFD+ G IS E+ +L LGE S E
Sbjct: 62 PFEEFLPAYE---GLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 118
Query: 153 DCRKMVRAVD--TDGDGMVNMDEFM 175
D ++++ D D +G V ++F+
Sbjct: 119 DVDEIIKLTDLQEDLEGNVKYEDFV 143
>pdb|2OS8|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 41 QADRNEMKRVFDRFD--SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFI 98
Q + +++K VF+ FD +DG + + + R +G +V + + G+ +
Sbjct: 6 QDEIDDLKEVFELFDFWDGRDGAVDAFKIGDVCRCLGINPRNEDVFAVGGTHKM-GEKSL 64
Query: 99 DFKEFMEAHKKGGGI------RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE 152
F+EF+ A++ G+ D AF+TFD+ G IS E+ +L LGE S E
Sbjct: 65 PFEEFLPAYE---GLMDCEQGTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDE 121
Query: 153 DCRKMVRAVD--TDGDGMVNMDEFM 175
+ +++ D D +G V +EF+
Sbjct: 122 EVDEIINLTDLQEDLEGNVKYEEFV 146
>pdb|3PN7|C Chain C, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|F Chain F, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|C Chain C, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|F Chain F, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|C Chain C, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|F Chain F, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 156
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 41 QADRNEMKRVFDRFD--SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFI 98
Q + +++K VF+ FD +DG + + + R +G +V + + G+ +
Sbjct: 5 QDEIDDLKEVFELFDFWDGRDGAVDAFKIGDVCRCLGINPRNEDVFAVGGTHKM-GEKSL 63
Query: 99 DFKEFMEAHKKGGGI------RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE 152
F+EF+ A++ G+ D AF+TFD+ G IS E+ +L LGE S E
Sbjct: 64 PFEEFLPAYE---GLMDCEQGTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDE 120
Query: 153 DCRKMVRAVD--TDGDGMVNMDEFM 175
+ +++ D D +G V +EF+
Sbjct: 121 EVDEIINLTDLQEDLEGNVKYEEFV 145
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 41 QADRNEMKRVFDRFD--SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFI 98
Q + +++K VF+ FD +DG + + + R +G +V + + G+ +
Sbjct: 2 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKM-GEKSL 60
Query: 99 DFKEFMEAHKKGGGIRTM------DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE 152
F+EF+ A++ G+ D AF+TFD+ G IS E+ +L LGE S E
Sbjct: 61 PFEEFLPAYE---GLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 117
Query: 153 DCRKMVRAVD--TDGDGMVNMDEFM 175
D ++++ D D +G V ++F+
Sbjct: 118 DVDEIIKLTDLQEDLEGNVKYEDFV 142
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 41 QADRNEMKRVFDRFD--SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFI 98
Q + +++K VF+ FD +DG + + + R +G +V + + G+ +
Sbjct: 2 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKM-GEKSL 60
Query: 99 DFKEFMEAHKKGGGIRTM------DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE 152
F+EF+ A++ G+ D AF+TFD+ G IS E+ +L LGE S E
Sbjct: 61 PFEEFLPAYE---GLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 117
Query: 153 DCRKMVRAVD--TDGDGMVNMDEFM 175
D ++++ D D +G V ++F+
Sbjct: 118 DVDEIIKLTDLQEDLEGNVKYEDFV 142
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM----E 105
VF+ FD++K+G I E+ L + + ++ FQ+ DLD +G I + E +
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDA 127
Query: 106 AHKKGGGIRTMD---------IQSAFRTFDKNDDGKISAEEILEMLRR 144
+K G + + + F DKN DG+++ EE E +R
Sbjct: 128 IYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175
>pdb|1DFK|Y Chain Y, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Y Chain Y, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|W Chain W, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 139
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDG 96
LP Q EMK F D ++DG +S+ + KAI +G+A E+ + + + G
Sbjct: 1 LP--QKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPG 54
Query: 97 FIDFKEFME--AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDC 154
++F F+ + K G I++AF FD+ + K++ E I ++L +G++ + ++
Sbjct: 55 PLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEM 114
Query: 155 RKMVRAVDTDG 165
R + +G
Sbjct: 115 RMTFKEAPVEG 125
>pdb|2EC6|C Chain C, Placopecten Striated Muscle Myosin Ii
Length = 156
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 41 QADRNEMKRVFDRFD--SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFI 98
Q + +++K VF+ FD +DG + + + R +G +V + + G+ +
Sbjct: 5 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKM-GEKSL 63
Query: 99 DFKEFMEAHKKGGGIRTM------DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE 152
F+EF+ A++ G+ D AF+TFD+ G IS E+ +L LGE S E
Sbjct: 64 PFEEFLPAYE---GLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDE 120
Query: 153 DCRKMVRAVD--TDGDGMVNMDEFM 175
+ +++ D D +G V +EF+
Sbjct: 121 EVDEIINLTDLQEDLEGNVKYEEFV 145
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 27/157 (17%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
QA + F D NK G +S+M+ L+ IG ++ +I + DG +DF
Sbjct: 25 QASLLRLHHRFRALDRNKKGYLSRMD----LQQIGALAVNPLGDRIIESFFPDGSQRVDF 80
Query: 101 KEFME--AH--------------KKGGGI--RTMDIQSAFRTFDKNDDGKISAEEILEML 142
F+ AH KK + R + AF+ +D + DGKIS E+L++L
Sbjct: 81 PGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVL 140
Query: 143 RRL-GESCSLEDCR----KMVRAVDTDGDGMVNMDEF 174
R + G + E + V+ D DGDG V+ EF
Sbjct: 141 RLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEF 177
>pdb|3I5G|C Chain C, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|C Chain C, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|C Chain C, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|C Chain C, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 159
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 46 EMKRVFDRFD--SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
E++ VFD FD +DG + + +LR +G ++V + + G+ +E
Sbjct: 10 EVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKM-GEKAYKLEEI 68
Query: 104 M----EAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159
+ E K G + AF+TFD+ G IS+ EI +L+ LGE + + C +
Sbjct: 69 LPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128
Query: 160 AVDT--DGDGMVNMDEFM 175
D D DG + ++ M
Sbjct: 129 FCDIREDIDGNIKYEDLM 146
>pdb|3TZ1|A Chain A, Crystal Structure Of The Ca2+-saturated C-terminal Domain
Of Akazara Scallop Troponin C In Complex With A Troponin
I Fragment
Length = 74
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+++ AFR DK G I + + +L+ LG+ + ++ M+ DTDG G V+ +EF
Sbjct: 8 ELKEAFRVLDKEKKGVIKVDVLRWILKSLGDELTEDEIENMIAETDTDGSGTVDYEEFKC 67
Query: 177 MMTRS 181
+M S
Sbjct: 68 LMMSS 72
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
D E+K F D K G I + IL+++G E+ + D DG G +D++E
Sbjct: 5 DERELKEAFRVLDKEKKGVIKVDVLRWILKSLGDELTEDEIENMIAETDTDGSGTVDYEE 64
Query: 103 F 103
F
Sbjct: 65 F 65
>pdb|1KK8|B Chain B, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 139
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
Q EMK F D ++DG +S+ + KAI +G+A E+ + + + G ++F
Sbjct: 2 QKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPGPLNF 57
Query: 101 KEFME--AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMV 158
F+ + K G I++AF FD+ + K++ E I ++L +G++ + ++ R
Sbjct: 58 TMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTF 117
Query: 159 RAVDTDGDGMVNMDEFMTMMTRS 181
+ +G G + +F M+ S
Sbjct: 118 KEAPVEG-GKFDYVKFTAMIKGS 139
>pdb|1WDC|B Chain B, Scallop Myosin Regulatory Domain
pdb|1B7T|Y Chain Y, Myosin Digested By Papain
pdb|1KK7|Y Chain Y, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|B Chain B, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|B Chain B, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|B Chain B, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Y Chain Y, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Y Chain Y, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|B Chain B, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JTD|B Chain B, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
pdb|3JVT|B Chain B, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Query: 30 DRQNSSLLPTF-QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQ 88
D+ S +L Q EMK F D ++DG +S+ + KAI +G+A E+ + +
Sbjct: 2 DKAASGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK 61
Query: 89 VVDLDGDGFIDFKEFME--AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG 146
+ G ++F F+ + K G I++AF FD+ + K++ E I ++L +G
Sbjct: 62 ----EAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMG 117
Query: 147 ESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181
++ + ++ R + +G G + +F M+ S
Sbjct: 118 DNFNKDEMRMTFKEAPVEG-GKFDYVKFTAMIKGS 151
>pdb|1SCM|B Chain B, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 145
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 9/147 (6%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDG 96
LP Q EMK F D ++DG +S+ + KAI +G+A E+ + + + G
Sbjct: 1 LP--QKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPG 54
Query: 97 FIDFKEFME--AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDC 154
++F F+ + K G I++AF FD+ + K++ E I ++L +G++ + ++
Sbjct: 55 PLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEM 114
Query: 155 RKMVRAVDTDGDGMVNMDEFMTMMTRS 181
R + +G G + +F M+ S
Sbjct: 115 RMTFKEAPVEG-GKFDYVKFTAMIKGS 140
>pdb|2W4T|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 136
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
EMK F D ++DG +S+ + KAI +G+A E+ + + + G ++F F+
Sbjct: 5 EMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPGPLNFTMFLS 60
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
+ K G I++AF FD+ + K++ E I ++L +G++ + ++ R +
Sbjct: 61 IFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPV 120
Query: 164 DG 165
+G
Sbjct: 121 EG 122
>pdb|1OQP|A Chain A, Structure Of The Ca2+C-Terminal Domain Of Caltractin In
Complex With The Cdc31p-Binding Domain From Kar1p
Length = 77
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 41/65 (63%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+I AFR FD ++ G I+ +++ + + LGE+ + E+ ++M+ D + D ++ DEF+
Sbjct: 10 EILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIR 69
Query: 177 MMTRS 181
+M ++
Sbjct: 70 IMKKT 74
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 75 GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK-GGGIRTMDIQSAFRTFDKNDDGKI 133
G+ E+ K F++ D D G I K+ K+ G + ++Q D+NDD +I
Sbjct: 3 GERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEI 62
Query: 134 SAEEILEMLRR 144
+E + ++++
Sbjct: 63 DEDEFIRIMKK 73
>pdb|3RV5|A Chain A, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
pdb|3RV5|B Chain B, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
pdb|3RV5|C Chain C, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
pdb|3RV5|D Chain D, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
Length = 89
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183
+DG IS +E+ ++ R LG++ + E+ ++ + VD DG G V+ DEF+ R K
Sbjct: 32 EDGCISTKELGKVXRXLGQNPTPEELQEXIDEVDEDGSGTVDFDEFLVXXVRCXK 86
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 44 RNEMKRVFDRFD-SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+NE K FD F +DG IS E + R +GQ E+ + VD DG G +DF E
Sbjct: 17 KNEFKAAFDIFVLGAEDGCISTKELGKVXRXLGQNPTPEELQEXIDEVDEDGSGTVDFDE 76
Query: 103 FM 104
F+
Sbjct: 77 FL 78
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME---- 105
VF+ FD NKDG+I E+ L + ++ ++ F++ DLD DG+I E ++
Sbjct: 68 VFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDA 127
Query: 106 AHKKGGGIRTMD---------IQSAFRTFDKNDDGKISAEEILE 140
++ G + + F DKN DGK++ +E E
Sbjct: 128 IYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQE 171
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 86 IFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEML-- 142
+F V D + DG I+F EF++A G ++ AF+ +D ++DG I+ E+L+++
Sbjct: 68 VFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDA 127
Query: 143 --RRLGESCSLED--------CRKMVRAVDTDGDGMVNMDEF 174
+ +G + L + ++ +D + DG + + EF
Sbjct: 128 IYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEF 169
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 121 AFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
F FD+N DG+I E ++ L E R + D D DG + +E + ++
Sbjct: 68 VFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIV 125
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 47 MKRVFDRFDSNKDGKISQME----YKAILRAIGQASMISE--------VPKIFQVVDLDG 94
++ F +D + DG I++ E AI + +G + E V +IF ++D +
Sbjct: 101 LRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNA 160
Query: 95 DGFIDFKEFMEAHKKGGGI 113
DG + +EF E K I
Sbjct: 161 DGKLTLQEFQEGSKADPSI 179
>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
Length = 156
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 41 QADRNEMKRVFDRFD--SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFI 98
Q + +++K VF+ F +DG + + + R +G +V + + G+ +
Sbjct: 5 QDEIDDLKDVFELFAFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKM-GEKSL 63
Query: 99 DFKEFMEAHKKGGGIRTM------DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE 152
F+EF+ A++ G+ D AF+TFD+ G IS E+ +L LGE S E
Sbjct: 64 PFEEFLPAYE---GLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 120
Query: 153 DCRKMVRAVD--TDGDGMVNMDEFM 175
D ++++ D D +G V ++F+
Sbjct: 121 DVDEIIKLTDLQEDLEGNVKYEDFV 145
>pdb|1QX2|A Chain A, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A Conformational
Opening) At 1.44 A Resolution
pdb|1QX2|B Chain B, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A Conformational
Opening) At 1.44 A Resolution
Length = 76
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 117 DIQSAFRTF--DKNDDGKISAEEILEMLRRLGESC--SLEDCRKMVRAVDTDGDGMVNMD 172
+I+ AF F + D +IS EE+ +++ LG S + +M+ VD +GDG V+ +
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFE 65
Query: 173 EFMTMMTR 180
EF+ MM +
Sbjct: 66 EFLVMMKK 73
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 46 EMKRVFDRFDSNKDG---KISQMEYKAILRAIGQASM--ISEVPKIFQVVDLDGDGFIDF 100
E+K F+ F + K+G +IS+ E K +++ +G + + +S + ++ + VD +GDG + F
Sbjct: 6 EIKGAFEVF-AAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSF 64
Query: 101 KEFMEAHKK 109
+EF+ KK
Sbjct: 65 EEFLVMMKK 73
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 112 GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGE 147
G+ T+D DKN DG++S EE L M++++ +
Sbjct: 43 GMSTLD--EMIEEVDKNGDGEVSFEEFLVMMKKISQ 76
>pdb|2FCE|A Chain A, Solution Structure Of C-Lobe Myosin Light Chain From
Saccharomices Cerevisiae
Length = 70
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
+T D AF+ FDK GK+S ++ ML LGE + + ++++ V+ D +G ++ +
Sbjct: 3 KTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKK 62
Query: 174 FMTMMTR 180
F+ + R
Sbjct: 63 FIEDVLR 69
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
+A + + F FD GK+S + + +L +G+ +EV ++ + V++D +G ID+
Sbjct: 1 KAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDY 60
Query: 101 KEFME 105
K+F+E
Sbjct: 61 KKFIE 65
>pdb|2SCP|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|2SCP|B Chain B, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|1Q80|A Chain A, Solution Structure And Dynamics Of Nereis Sarcoplasmic
Calcium Binding Protein
Length = 174
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAIL-RAIGQASMISEVPKIFQ-----VVD-------- 91
+MK F+R D +KDG I++M+++++ R ++ M +E K+ V D
Sbjct: 7 KMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAG 66
Query: 92 ---LDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGES 148
+D FI+ + M + + + + FR D N+D IS +E LG
Sbjct: 67 GKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLD 126
Query: 149 CSLEDCRKMVRAVDTDGDGMVNMDEFM 175
++ A+DT+ DG+++++EF+
Sbjct: 127 KTMAPAS--FDAIDTNNDGLLSLEEFV 151
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 51 FDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
F D+N+D IS+ EY +G ++ P F +D + DG + +EF+ A
Sbjct: 100 FRAVDTNEDNNISRDEYGIFFGMLGLDKTMA--PASFDAIDTNNDGLLSLEEFVIA 153
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 98 IDFKEFMEAHKKGGGIRTMDIQS--AFRTFDKNDDGKISAEEILEMLRRL-GESCSLEDC 154
+ F++F++ T DI+S AFR FD +DDG ++ E++ ++ L GE ED
Sbjct: 78 LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEG---EDT 134
Query: 155 R-----------KMVRAVDTDGDGMVNMDEFMTMMTRS 181
R ++ D D DG +N+ EF +++RS
Sbjct: 135 RLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRS 172
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 112 GIRTM---DIQSAFRTFDKNDDGKISAEEILEMLRRL---GESCSLEDCRKMVRAVDTDG 165
G++ M D++ F+ D + G I EE+ +L+ G + + + ++A D DG
Sbjct: 35 GLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDG 94
Query: 166 DGMVNMDEFMTMMTRS 181
DG + +DEF T++ +
Sbjct: 95 DGKIGIDEFETLVHEA 110
>pdb|1S3P|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin S55d/e59d
Mutant
Length = 109
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESC---SLEDCRKMVRAVDTDGDGMVNMDE 173
D++ F DK+ DG I +E+ +L+ S ++ + ++ A D DGDG + ++E
Sbjct: 42 DVKKVFHILDKDKDGFIDEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEE 101
Query: 174 FMTMMTRS 181
F T++ S
Sbjct: 102 FSTLVAES 109
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQAS---MISEVPKIFQVVDLDGDGFIDFK 101
+++K+VF D +KDG I + E +IL+ + E + D DGDG I +
Sbjct: 41 DDVKKVFHILDKDKDGFIDEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVE 100
Query: 102 EF 103
EF
Sbjct: 101 EF 102
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 98 IDFKEFMEAHKKGGGIRTMDIQS--AFRTFDKNDDGKISAEEILEMLRRL-GESCSLEDC 154
+ F++F++ T DI+S AFR FD +DDG ++ E++ ++ L GE ED
Sbjct: 109 LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEG---EDT 165
Query: 155 R-----------KMVRAVDTDGDGMVNMDEFMTMMTRS 181
R ++ D D DG +N+ EF +++RS
Sbjct: 166 RLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRS 203
>pdb|2OS8|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 30 DRQNSSLLPTF-QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQ 88
D+ S +L Q EMK F D N+DG I + K + ++G+ E+ + +
Sbjct: 3 DKAASGVLTKLPQKQIQEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLK 62
Query: 89 VVDLDGDGFIDFKEFME--AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG 146
+ G ++F F+ + K G I++AF FD+ D K++ E I ++L +G
Sbjct: 63 ----EAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFGMFDELDTKKLNIEYIKDLLENMG 118
Query: 147 ESCSLEDCRKMVRAVDTDG 165
++ + ++ R + +G
Sbjct: 119 DNFNKDEMRMTFKEAPVEG 137
>pdb|3PN7|B Chain B, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|E Chain E, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|B Chain B, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|E Chain E, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
Length = 161
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
EMK F D N+DG I + K + ++G+ E+ + + + G ++F F+
Sbjct: 24 EMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLK----EAPGPLNFTMFLS 79
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
+ K G I++AF FD+ D K++ E I ++L +G++ + ++ R +
Sbjct: 80 IFSDKLSGTDSEETIRNAFGMFDELDTKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPV 139
Query: 164 DGDGMVNMDEFMTMMTRS 181
+G G + F+ M+ S
Sbjct: 140 EG-GKFDYVRFVAMIKGS 156
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 110 GGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL--------GESCSLEDCRKMVRAV 161
G G R + Q A +D +ISA E+ +LRR+ + S+E C+ MV +
Sbjct: 531 GDGFRRLFAQLA------GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDML 584
Query: 162 DTDGDGMVNMDEFMTMMTRSMK 183
D DG G + + EF + T+ K
Sbjct: 585 DEDGSGKLGLKEFYILWTKIQK 606
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 110 GGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL--------GESCSLEDCRKMVRAV 161
G G R + Q A +D +ISA E+ +LRR+ + S+E C+ MV +
Sbjct: 531 GDGFRRLFAQLA------GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDML 584
Query: 162 DTDGDGMVNMDEFMTMMTRSMK 183
D DG G + + EF + T+ K
Sbjct: 585 DEDGSGKLGLKEFYILWTKIQK 606
>pdb|3TUY|B Chain B, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|E Chain E, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 161
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
EMK F D N+DG I + K + ++G+ E+ + + + G ++F F+
Sbjct: 24 EMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLK----EAPGPLNFTMFLS 79
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
+ K G I++AF FD+ D K++ E I ++L +G++ + ++ R +
Sbjct: 80 IFSDKLSGTDSEETIRNAFGMFDELDTKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPV 139
Query: 164 DG 165
+G
Sbjct: 140 EG 141
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 110 GGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL--------GESCSLEDCRKMVRAV 161
G G R + Q A +D +ISA E+ +LRR+ + S+E C+ MV +
Sbjct: 531 GDGFRRLFAQLA------GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDML 584
Query: 162 DTDGDGMVNMDEFMTMMTRSMK 183
D DG G + + EF + T+ K
Sbjct: 585 DEDGSGKLGLKEFYILWTKIQK 606
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 76 QASMI--SEVPKIFQVVDLDGDGFID-------FKEFMEAHKKGGGIRTMDIQSAFRTFD 126
Q+S+I S+ +I+ D DG G+++ +E ++A KK G + ++++ +
Sbjct: 9 QSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYG 68
Query: 127 KNDDGKIS---------AEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
+ DDGKI EE +L R + S E+ K R DTD G + +E
Sbjct: 69 QRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEEL 125
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 39/184 (21%)
Query: 24 RLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRA---------I 74
L +R + L P EMK D++ DGKI +E +L
Sbjct: 44 ELLQARKKAGLELSP-------EMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRC 96
Query: 75 GQASMISEVPKIFQVVDLDGDGFID---FKEFMEAHKKGGGIRTMDIQSA------FRTF 125
Q E K ++ D D GFI+ K F++ + D + A + F
Sbjct: 97 QQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLF 156
Query: 126 DKNDDGKISAEEILEMLRRL-----------GESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
D N+DGK+ E+ EM R L G ++ K D DG+G ++ +E
Sbjct: 157 DSNNDGKL---ELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENEL 213
Query: 175 MTMM 178
++
Sbjct: 214 DALL 217
>pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Obelia Geniculata At
1.82 A Resolution
Length = 195
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107
VFD FD + G I+ E+KA R G + + K FQ DLD G +D E H
Sbjct: 118 VFDIFDKDGSGTITLDEWKAYGRISGISPSEEDCEKTFQHCDLDNSGELDVDEMTRQH 175
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 32/158 (20%)
Query: 48 KRVFDRFDSNKDGKIS--QMEYKA---ILRAIGQASMISE-----VPKIFQVVDLDGDGF 97
K +FD D N +G+I+ ++ KA I + +G ++ V F+ L+
Sbjct: 23 KFMFDYLDINGNGQITLDEIVSKASDDICKNLGATPAQTQRHQDCVEAFFRGCGLEYGKE 82
Query: 98 IDFKEFMEAHKKGGGIRTMDIQ---------------SAFRTFDKNDDGKISAEEILEML 142
F EF+E K + D+ + F FDK+ G I+ +E
Sbjct: 83 TKFPEFLEGWKN---LANADLAKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYG 139
Query: 143 RRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
R G S S EDC K + D D G +++DE MTR
Sbjct: 140 RISGISPSEEDCEKTFQHCDLDNSGELDVDE----MTR 173
>pdb|1NYA|A Chain A, Nmr Solution Structure Of Calerythrin, An Ef-hand Calcium-
Binding Protein
Length = 176
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 126 DKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
DKN DG+I+A+E L LG S + + + VDT+G+G +++DE +T +
Sbjct: 112 DKNADGQINADEFAAWLTALGMSKA--EAAEAFNQVDTNGNGELSLDELLTAV 162
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
+K + D N DG+I+ E+ A L A+G + +E + F VD +G+G + E + A
Sbjct: 104 VKGIVGMCDKNADGQINADEFAAWLTALGMSK--AEAAEAFNQVDTNGNGELSLDELLTA 161
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEML 142
V I + D + DG I+ EF A G+ + AF D N +G++S +E+L +
Sbjct: 104 VKGIVGMCDKNADGQINADEFA-AWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAV 162
Query: 143 R 143
R
Sbjct: 163 R 163
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 36/145 (24%)
Query: 47 MKRVFDRFDSNKDGKISQMEY----KAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
+K+ FDR+D + +G + + ++ + I A G+ + +EV + G D+
Sbjct: 9 LKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFG----GLFDYL- 63
Query: 103 FMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL----GESCSLEDCRKMV 158
A + G G DG ++ E+ + + L GE+ +V
Sbjct: 64 ---AKEAGVG----------------SDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVV 104
Query: 159 RAV----DTDGDGMVNMDEFMTMMT 179
+ + D + DG +N DEF +T
Sbjct: 105 KGIVGMCDKNADGQINADEFAAWLT 129
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 27/122 (22%)
Query: 86 IFQVVDLDGDGFIDFKEFMEAHKKG-----GGIRTMDIQSAFRTFDKNDDGKISAEEILE 140
+F D D +G + F++F+ KG G + AF +D N DG I+ EE+L+
Sbjct: 107 LFNAFDTDHNGAVSFEDFI----KGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLD 162
Query: 141 MLRR------------LGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTM------MTRSM 182
+++ L E + + +D + DG+V +DEF+ + RSM
Sbjct: 163 IMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSM 222
Query: 183 KL 184
+L
Sbjct: 223 QL 224
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAI----GQASMI--------SEVPKIFQVVD 91
+ ++ F+ +D NKDG I++ E I++AI G+ + V FQ +D
Sbjct: 137 QEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMD 196
Query: 92 LDGDGFIDFKEFMEAHKKGGGI-RTMDI 118
+ DG + EF+E+ +K I R+M +
Sbjct: 197 KNKDGVVTIDEFIESCQKDENIMRSMQL 224
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 19/111 (17%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109
+F+ FD++ +G +S ++ L + + ++ ++ F + D++ DG+I +E ++ K
Sbjct: 107 LFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMK- 165
Query: 110 GGGIRTM----------------DIQSAFRTFDKNDDGKISAEEILEMLRR 144
I M +++ F+ DKN DG ++ +E +E ++
Sbjct: 166 --AIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
>pdb|1S6J|A Chain A, N-Terminal Region Of The Ca2+-Saturated Calcium Regulatory
Domain (Cld) From Soybean Calcium-Dependent Protein
Kinase- Alpha (Cdpk)
Length = 87
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
+K +F D++ G I+ E K L+ +G M SE+ + D+D G ID+ EF+ A
Sbjct: 25 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 84
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 111 GGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVN 170
GG++ + F+ D ++ G I+ +E+ + L+R+G + + ++ A D D G ++
Sbjct: 23 GGLKEL-----FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTID 77
Query: 171 MDEFMT 176
EF+
Sbjct: 78 YGEFIA 83
>pdb|2SAS|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Amphioxus Refined At 2.4 Angstroms Resolution
Length = 185
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAIL-RAIGQASMISEVPK--------IFQVVDLDG 94
+E + + R D NKD +S EY A+ + I ++++P +F+ +D+ G
Sbjct: 59 EDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSG 118
Query: 95 DGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKIS 134
DG +D +EF + + K ++ D+ + + D GK++
Sbjct: 119 DGIVDLEEF-QNYCKNFQLQCADVPAVYNVI--TDGGKVT 155
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 25/110 (22%)
Query: 90 VDLDGDGFI---DFKEFMEAHKK--GGGIRTMDIQSAFRTF-----------DKNDDGKI 133
+D++ DG I DF++ M +K+ G + D +S + D N D +
Sbjct: 18 LDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVV 77
Query: 134 SAEEILEMLRRLGESC-SLED----CRK----MVRAVDTDGDGMVNMDEF 174
S EE L M + +C S+ D C+ + + +D GDG+V+++EF
Sbjct: 78 SWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEF 127
>pdb|1EJ3|A Chain A, Crystal Structure Of Aequorin
pdb|1EJ3|B Chain B, Crystal Structure Of Aequorin
pdb|1UHI|A Chain A, Crystal Structure Of I-aequorin
pdb|1UHI|B Chain B, Crystal Structure Of I-aequorin
pdb|1UHK|A Chain A, Crystal Structure Of N-Aequorin
pdb|1UHK|B Chain B, Crystal Structure Of N-Aequorin
Length = 191
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 34/175 (19%)
Query: 33 NSSLLPTFQADR--NEMKRVFDRFDSNKDGKIS--QMEYKA---ILRAIGQASMISEVPK 85
NS L F R K +F+ D N +GKIS +M YKA ++ +G ++ K
Sbjct: 2 NSKLTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHK 61
Query: 86 IFQVVDLDGDGF-----IDFKEFMEAHKKGGGIRTMDIQ---------------SAFRTF 125
G G D+ ++E KK + T +++ + F
Sbjct: 62 DAVEAFFGGAGMKYGVETDWPAYIEGWKK---LATDELEKYAKNEPTLIRIWGDALFDIV 118
Query: 126 DKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
DK+ +G I+ +E + G S EDC + R D D G +++DE MTR
Sbjct: 119 DKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDE----MTR 169
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109
+FD D +++G I+ E+KA +A G + + F+V D+D G +D E H
Sbjct: 114 LFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL- 172
Query: 110 GGGIRTMD 117
G TMD
Sbjct: 173 -GFWYTMD 179
>pdb|2E6W|A Chain A, Solution Structure And Calcium Binding Properties Of Ef-
Hands 3 And 4 Of Calsenilin
Length = 100
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIG------------QASMISEVPKIFQVVD 91
++K F+ +D NKDG I++ E AI+++I + + V + F+ +D
Sbjct: 8 HEKLKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPAEHVERFFEKMD 67
Query: 92 LDGDGFIDFKEFMEAHKKGGGI 113
+ DG + +EF+EA +K I
Sbjct: 68 RNQDGVVTIEEFLEACQKDENI 89
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRR------------LGESCSLEDCRKMVRAVDTDG 165
++ AF +D N DG I+ EE+L +++ L E E + +D +
Sbjct: 11 LKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPAEHVERFFEKMDRNQ 70
Query: 166 DGMVNMDEFM 175
DG+V ++EF+
Sbjct: 71 DGVVTIEEFL 80
>pdb|3F45|A Chain A, Structure Of The R75a Mutant Of Rat Alpha-Parvalbumin
Length = 109
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESC---SLEDCRKMVRAVDTDGDGMVNMDE 173
D++ F DK+ G I +E+ +L+ S ++ + ++ A D DGDG + ++E
Sbjct: 42 DVKKVFHILDKDKSGFIEEDELGSILKGFSSDAADLSAKETKTLMAAGDKDGDGKIGVEE 101
Query: 174 FMTMMTRS 181
F T++ S
Sbjct: 102 FSTLVAES 109
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ-ASMIS--EVPKIFQVVDLDGDGFIDFK 101
+++K+VF D +K G I + E +IL+ A+ +S E + D DGDG I +
Sbjct: 41 DDVKKVFHILDKDKSGFIEEDELGSILKGFSSDAADLSAKETKTLMAAGDKDGDGKIGVE 100
Query: 102 EF 103
EF
Sbjct: 101 EF 102
>pdb|1RTP|1 Chain 1, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|2 Chain 2, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|3 Chain 3, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RWY|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|B Chain B, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|C Chain C, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|2JWW|A Chain A, Calcium-Free Rat Alpha-Parvalbumin
Length = 109
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESC---SLEDCRKMVRAVDTDGDGMVNMDE 173
D++ F DK+ G I +E+ +L+ S ++ + ++ A D DGDG + ++E
Sbjct: 42 DVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEE 101
Query: 174 FMTMMTRS 181
F T++ S
Sbjct: 102 FSTLVAES 109
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQAS---MISEVPKIFQVVDLDGDGFIDFK 101
+++K+VF D +K G I + E +IL+ + E + D DGDG I +
Sbjct: 41 DDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVE 100
Query: 102 EF 103
EF
Sbjct: 101 EF 102
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 129 DDGKISAEEILEMLRRL--------GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
DD +IS +E+ +L R+ SLE CR MV +D DG+G + + EF + R
Sbjct: 546 DDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNR 605
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 129 DDGKISAEEILEMLRRL--------GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
DD ++SA E++ +L ++ + ++ CR MV +D+D G + +EF +
Sbjct: 743 DDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLW 800
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 40 FQADRNEMKR---VFDRFDSNKDGKISQMEYKAILRAIG---QASMISEVPKIFQVVDLD 93
F+ N +K+ ++ RF++++ G I E A G + S + + + D
Sbjct: 796 FKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS----D 851
Query: 94 GDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISA--EEILEM 141
G +DF F+ +R + AFR+ DKN G+I +E L++
Sbjct: 852 ETGNMDFDNFISCL-----VRLDAMFRAFRSLDKNGTGQIQVNIQEWLQL 896
>pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Without The
N-Terminal Domain
Length = 73
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESC---SLEDCRKMVRAVDTDGDGMVNMDE 173
D++ F DK+ G I +E+ +L+ S ++ + ++ A D DGDG + ++E
Sbjct: 6 DVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEE 65
Query: 174 FMTMMTRS 181
F T++ S
Sbjct: 66 FSTLVAES 73
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQAS---MISEVPKIFQVVDLDGDGFIDFK 101
+++K+VF D +K G I + E +IL+ + E + D DGDG I +
Sbjct: 5 DDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVE 64
Query: 102 EF 103
EF
Sbjct: 65 EF 66
>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
Length = 208
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRL-GESCSLED----CRKMVRAVDTDGDGM 168
R+ + AFR +D + D KIS +E+L++LR + G + S E + ++ D DGD
Sbjct: 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSA 170
Query: 169 VNMDEFMTMMTR 180
++ EF+ ++ +
Sbjct: 171 ISFTEFVKVLEK 182
>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+
Exchanger 1 Complexed With Essential Cofactor
Calcineurin B Homologous Protein 1
Length = 195
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 78/162 (48%), Gaps = 29/162 (17%)
Query: 44 RNEMKRVFDRF---DSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
+++ R++ RF D ++G +S+ +++ I + ++ +I +G+ ++F
Sbjct: 25 HSQITRLYSRFTSLDKGENGTLSREDFQRI----PELAINPLGDRIINAFFPEGEDQVNF 80
Query: 101 KEFM------------EAHKKGGGIRTMDIQS-----AFRTFDKNDDGKISAEEILEMLR 143
+ FM E K G ++ +S AFR +D + D KIS +E+L++LR
Sbjct: 81 RGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQVLR 140
Query: 144 RL-GESCSLED----CRKMVRAVDTDGDGMVNMDEFMTMMTR 180
+ G + S E + ++ D DGD ++ EF+ ++ +
Sbjct: 141 MMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK 182
>pdb|1RJV|A Chain A, Solution Structure Of Human Alpha-Parvalbumin Refined With
A Paramagnetism-Based Strategy
pdb|1RK9|A Chain A, Solution Structure Of Human Alpha-Parvalbumin (Minimized
Average Structure)
Length = 110
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESC---SLEDCRKMVRAVDTDGDGMVNMDE 173
D++ F DK+ G I +E+ +L+ S ++ + ++ A D DGDG + +DE
Sbjct: 43 DVKKVFHMLDKDKSGFIEEDELGFILKGFSPDARDLSAKETKMLMAAGDKDGDGKIGVDE 102
Query: 174 FMTMMTRS 181
F T++ S
Sbjct: 103 FSTLVAES 110
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 81 SEVPKIFQVVDLDGDGFID---FKEFMEAHKKGGGIRTM-DIQSAFRTFDKNDDGKISAE 136
S++ +IF+++D D GFI+ K F++ + G + T + ++ D + DGKI AE
Sbjct: 41 SQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAE 100
Query: 137 EILEMLR 143
E EM++
Sbjct: 101 EFQEMVQ 107
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 122 FRTFDKNDDGKISAEEILEMLRRLGESC---SLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
FR D + G I +E+ L+R + + + + A D DGDG + +EF M+
Sbjct: 47 FRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMV 106
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 34 SSLLPTFQADRNEMKRVFDRFDSN--KDGKISQMEYK-AILRAIGQASMISEVPKIFQVV 90
+S+ P + + +F + S+ DG I + E++ A+ R + ++ ++ +IF V
Sbjct: 26 ASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFAD--RIFDVF 83
Query: 91 DLDGDGFIDFKEFMEA---HKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGE 147
D+ +G I+F EF+ + + ++ AF+ +D G I EE+ EM+ L
Sbjct: 84 DVKRNGVIEFGEFVRSLGVFHPSAPVHE-KVKFAFKLYDLRQTGFIEREELKEMVVALLH 142
Query: 148 SCSLEDCRKMVRAV--------DTDGDGMVNMDEF 174
L M+ + D DG +++DE+
Sbjct: 143 ESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEW 177
>pdb|2EC6|B Chain B, Placopecten Striated Muscle Myosin Ii
Length = 133
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
EMK F D N+DG I + K ++G+ E+ + + + G ++F F+
Sbjct: 3 EMKEAFTMIDQNRDGFIDINDLKEEFSSLGRTPDDKELTAMLK----EAPGPLNFTMFLS 58
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
+ K G I++AF FD++ K++ E I ++L +G++ + ++ R +
Sbjct: 59 IFSDKLSGTDSEETIRNAFGMFDEDATKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPV 118
Query: 164 DG 165
+G
Sbjct: 119 EG 120
>pdb|2PVB|A Chain A, Pike Parvalbumin (Pi 4.10) At Low Temperature (100k) And
Atomic Resolution (0.91 A).
pdb|3PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|1PVB|A Chain A, X-Ray Structure Of A New Crystal Form Of Pike 4.10
Parvalbumin
pdb|2PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|1PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|4PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
Length = 108
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESC-SLEDC--RKMVRAVDTDGDGMVNMDE 173
D++ AF D++ G I +E+ L+ S +L D + + D DGDGM+ +DE
Sbjct: 42 DVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDE 101
Query: 174 FMTMM 178
F M+
Sbjct: 102 FAAMI 106
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 19/156 (12%)
Query: 34 SSLLPTFQADRNEMKRVFDRFDSN--KDGKISQMEYK-AILRAIGQASMISEVPKIFQVV 90
+S+ P + + +F + S+ DG I + E++ A+ R + ++ ++ +IF V
Sbjct: 26 ASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFAD--RIFDVF 83
Query: 91 DLDGDGFIDFKEFMEA----HKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG 146
D+ +G I+F EF+ + H ++ AF+ +D G I EE+ EM+ L
Sbjct: 84 DVKRNGVIEFGEFVRSLGVFHPSAPVHEK--VKFAFKLYDLRQTGFIEREELKEMVVALL 141
Query: 147 ESCSLEDCRKMVRAV--------DTDGDGMVNMDEF 174
L M+ + D DG +++DE+
Sbjct: 142 HESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEW 177
>pdb|1SL8|A Chain A, Calcium-Loaded Apo-Aequorin From Aequorea Victoria
Length = 191
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 30/170 (17%)
Query: 36 LLPTFQADR--NEMKRVFDRFDSNKDGKIS--QMEYKA---ILRAIGQASMISEVPKIFQ 88
L P F + K +F+ D N +G+IS +M YKA ++ +G ++ K
Sbjct: 5 LTPDFDNPKWIGRHKHMFNFLDVNHNGRISLDEMVYKASDIVINNLGATPEQAKRHKDAV 64
Query: 89 VVDLDGDGF-----IDFKEFMEAHKKGGG-------------IRTMDIQSAFRTFDKNDD 130
G G ++ E++E K+ IR + F DK+ +
Sbjct: 65 EAFFGGAGMKYGVETEWPEYIEGWKRLASEELKRYSKNQITLIRLWG-DALFDIIDKDQN 123
Query: 131 GKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
G IS +E + G S EDC + R D D G +++DE MTR
Sbjct: 124 GAISLDEWKAYTKSAGIIQSSEDCEETFRVCDIDESGQLDVDE----MTR 169
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109
+FD D +++G IS E+KA ++ G + + F+V D+D G +D E H
Sbjct: 114 LFDIIDKDQNGAISLDEWKAYTKSAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL- 172
Query: 110 GGGIRTMD 117
G TMD
Sbjct: 173 -GFWYTMD 179
>pdb|2K7B|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 N-Domain
Length = 76
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E++ F FD +KDG I+ + +R +G E+ ++ Q ++++ G +DF +F+E
Sbjct: 11 ELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVE 70
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 37/62 (59%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+++ AFR FDK+ DG I+ ++ +R +G + + ++ + ++ + G V+ D+F+
Sbjct: 11 ELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVE 70
Query: 177 MM 178
+M
Sbjct: 71 LM 72
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 35.8 bits (81), Expect = 0.014, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
Q NE + F+ FD K G + +++A L ++G +E +I +VD + G + F
Sbjct: 721 QEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTF 780
Query: 101 KEFME 105
+ F++
Sbjct: 781 QAFID 785
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176
+ +++F FD+ G + E+ L +G + + +++ VD + G+V F+
Sbjct: 726 EFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFID 785
Query: 177 MMTR 180
M+R
Sbjct: 786 FMSR 789
>pdb|3AKA|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
Regulation By A Streptomyces Coelicolor Calcium-Binding
Protein
Length = 166
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 33/157 (21%)
Query: 51 FDRFDSNKDGKISQMEY----KAILRAIGQAS-------MISEVPKIFQ----VVDLDGD 95
F FD + +G I + ++ KA+L G A+ + ++Q + D DGD
Sbjct: 10 FTTFDQDGNGHIDRSDFSGAAKALLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGD 69
Query: 96 GFIDFKEFMEAHKKGGGIRTMD------------IQSAFRTFDKNDDGKISAEEILEMLR 143
I +EF+ K R D + +A D + DG ++ + L
Sbjct: 70 QRITREEFVTGAVK----RLRDKPDRFAEIARPFLHAALGVADTDGDGAVTVADTARALT 125
Query: 144 RLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
G L R+ A+DTDGDG V E + R
Sbjct: 126 AFGVPEDL--ARQAAAALDTDGDGKVGETEIVPAFAR 160
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
++ VF D+N+ G++ + E++A+ + +E +FQ +D D DG I F+EF
Sbjct: 29 LRSVFAACDANRSGRLEREEFRALCTELRVRPADAEA--VFQRLDADRDGAITFQEF 83
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 7 LDFQYKISKNKFLRKPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQME 66
+++ +I+ +FL +L +S ++ + PT R VFD FD + G I+ E
Sbjct: 77 MEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLI--REWGDAVFDIFDKDGSGTITLDE 134
Query: 67 YKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107
+KA + G + + F+ DLD G +D E H
Sbjct: 135 WKAYGKISGISPSQEDCEATFRHCDLDNSGDLDVDEMTRQH 175
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179
+ F FDK+ G I+ +E + G S S EDC R D D G +++DE MT
Sbjct: 117 AVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNSGDLDVDE----MT 172
Query: 180 R 180
R
Sbjct: 173 R 173
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 7 LDFQYKISKNKFLRKPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQME 66
+++ +I+ +FL +L +S ++ + PT R VFD FD + G I+ E
Sbjct: 77 MEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLI--REWGDAVFDIFDKDGSGTITLDE 134
Query: 67 YKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107
+KA + G + + F+ DLD G +D E H
Sbjct: 135 WKAYGKISGISPSQEDCEATFRHCDLDNSGDLDVDEMTRQH 175
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179
+ F FDK+ G I+ +E + G S S EDC R D D G +++DE MT
Sbjct: 117 AVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNSGDLDVDE----MT 172
Query: 180 R 180
R
Sbjct: 173 R 173
>pdb|3AKB|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
Regulation By A Streptomyces Coelicolor Calcium-Binding
Protein
Length = 166
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 33/157 (21%)
Query: 51 FDRFDSNKDGKISQMEY----KAILRAIGQAS-------MISEVPKIFQ----VVDLDGD 95
F FD + +G I + ++ KA+L G A+ + ++Q + D DGD
Sbjct: 10 FTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGD 69
Query: 96 GFIDFKEFMEAHKKGGGIRTMD------------IQSAFRTFDKNDDGKISAEEILEMLR 143
I +EF+ K R D + +A D + DG ++ + L
Sbjct: 70 QRITREEFVTGAVK----RLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125
Query: 144 RLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
G L R+ A+DTDGDG V E + R
Sbjct: 126 AFGVPEDL--ARQAAAALDTDGDGKVGETEIVPAFAR 160
>pdb|3KPX|A Chain A, Crystal Structure Analysis Of Photoprotein Clytin
Length = 198
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 28/64 (43%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
RN + VFD FD + G IS E+K G + K F+ DLD G +D E
Sbjct: 115 RNWGEAVFDIFDKDGSGSISLDEWKTYGGISGICPSDEDAEKTFKHCDLDNSGKLDVDEM 174
Query: 104 MEAH 107
H
Sbjct: 175 TRQH 178
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 28/159 (17%)
Query: 45 NEMKRVFDRFDSNKDGKIS--QMEYKA---ILRAIGQASMISE-----VPKIFQVVDLDG 94
N K +F+ D N +GKI+ ++ KA I +G ++ V F+ + LD
Sbjct: 23 NRHKFMFNFLDINGNGKITLDEIVSKASDDICAKLGATPAQTQRHQEAVEAFFKKIGLDY 82
Query: 95 DGFIDFKEFMEAHK-------------KGGGIRTMDIQSAFRTFDKNDDGKISAEEILEM 141
++F F+ K K IR ++ F FDK+ G IS +E
Sbjct: 83 GKEVEFPAFVNGWKELAKHDLKLWSQNKKSLIRNWG-EAVFDIFDKDGSGSISLDEWKTY 141
Query: 142 LRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
G S ED K + D D G +++DE MTR
Sbjct: 142 GGISGICPSDEDAEKTFKHCDLDNSGKLDVDE----MTR 176
>pdb|1BU3|A Chain A, Refined Crystal Structure Of Calcium-Bound Silver Hake (Pi
4.2) Parvalbumin At 1.65 A
Length = 109
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEI---LEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
DI+ AF D++ G I +E+ L++ + + + + ++A D+DGDG + +DE
Sbjct: 43 DIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDE 102
Query: 174 FMTMM 178
+ ++
Sbjct: 103 WAALV 107
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 67 YKAILRAIG-QASMISEVPKIFQVVDLDGDGFI---DFKEFMEAHKKGG-GIRTMDIQSA 121
YKA +G A ++ K F V+D D GFI + K F++ G + + ++
Sbjct: 27 YKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAF 86
Query: 122 FRTFDKNDDGKISAEEILEMLR 143
+ D + DG I +E +++
Sbjct: 87 LKAGDSDGDGAIGVDEWAALVK 108
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 59 DGKISQMEYK-AILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMD 117
DG I++ E++ A+ + + S+ ++ ++F + D +G + F+EF A +D
Sbjct: 33 DGLINKEEFQLALFKTNKKESLFAD--RVFDLFDTKHNGILGFEEFARALSVFHPNAPID 90
Query: 118 --IQSAFRTFDKNDDGKISAEEILEM-LRRLGES------CSLED-CRKMVRAVDTDGDG 167
I +F+ +D G I +E+ +M + L ES +ED K DT DG
Sbjct: 91 DKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDG 150
Query: 168 MVNMDEFMTMMTRSMKL 184
++ +E+ +++ R L
Sbjct: 151 KIDKEEWRSLVLRHPSL 167
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 37 LPTFQADRNE---MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISE-VPKIFQVVDL 92
L F+ ++ E RVFD FD+ +G + E+ L + I + + FQ+ DL
Sbjct: 43 LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDL 102
Query: 93 DGDGFI---DFKEFMEAHKKGGGIRTMD------IQSAFRTFDKNDDGKISAEEILEMLR 143
GFI + K+ + A G+ D I F D DGKI EE ++
Sbjct: 103 KQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVL 162
Query: 144 R 144
R
Sbjct: 163 R 163
>pdb|2HQ8|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
pdb|2HQ8|B Chain B, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
Length = 186
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
++D D++KDG +S E+KA L+A+G + F +D + +G I EF+
Sbjct: 107 MYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFL 161
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYK-----AILRAIGQASMISEVPKI--FQVVDLDGDG 96
R E RV D+ +IS E ++L+ G+ ++ + + + +D D DG
Sbjct: 58 RQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDG 117
Query: 97 FIDFKEFMEAHKKGGGIRTMD-IQSAFRTFDKNDDGKISAEEIL 139
++ EF + G T D + F T D N +G+IS +E L
Sbjct: 118 YVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFL 161
>pdb|3SIB|A Chain A, Crystal Structure Of Ure3-Binding Protein, Wild-Type
Length = 220
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 27 SSRDRQNSSLLPTFQADRNEMKRVFDRF---DSNKDG--KISQM---EYKAILRAIGQAS 78
S R+ LL T D + R++ F D ++ G +I+++ ++ +R Q +
Sbjct: 32 SVRNTWWFPLLNTIPLD--QYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTA 89
Query: 79 MISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTF---DKNDDGKISA 135
+ ++ ++ D D +G I F EFM +K ++ A+ F D+N G +
Sbjct: 90 L-----RMMRIFDTDFNGHISFYEFMAMYKF--------MELAYNLFVMNDRNRSGTLEP 136
Query: 136 EEILEMLRRLG 146
EIL L++LG
Sbjct: 137 HEILPALQQLG 147
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTM 177
I F D++ G + E++ G S + +M+R DTD +G ++ EFM M
Sbjct: 53 IYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAM 112
>pdb|2HPS|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri
Length = 186
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 51 FDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
+D D++KDG +S E+KA L+A+G + F +D + +G I EF+
Sbjct: 108 YDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFL 161
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYK-----AILRAIGQASMISEVPKI--FQVVDLDGDG 96
R E RV D+ +IS E ++L+ G+ + + + + +D D DG
Sbjct: 58 RQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKXKGEEKAXAVIQSLIXYDCIDTDKDG 117
Query: 97 FIDFKEFMEAHKKGGGIRTMD-IQSAFRTFDKNDDGKISAEEIL 139
++ EF + G T D + F T D N +G+IS +E L
Sbjct: 118 YVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFL 161
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 7 LDFQYKISKNKFLRKPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQME 66
+++ +I+ +FL +L +S ++ + PT R VFD FD + G I+ E
Sbjct: 77 MEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLI--REWGDAVFDIFDKDGSGTITLDE 134
Query: 67 YKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107
+KA + G + + F+ DLD G +D E H
Sbjct: 135 WKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQH 175
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179
+ F FDK+ G I+ +E + G S S EDC R D D G +++DE MT
Sbjct: 117 AVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDE----MT 172
Query: 180 R 180
R
Sbjct: 173 R 173
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 7 LDFQYKISKNKFLRKPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQME 66
+++ +I+ +FL +L +S ++ + PT R VFD FD + G I+ E
Sbjct: 77 MEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLI--REWGDAVFDIFDKDGSGTITLDE 134
Query: 67 YKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107
+KA + G + + F+ DLD G +D E H
Sbjct: 135 WKAYGKISGISPSQEDCEATFRHCDLDDSGDLDVDEMTRQH 175
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179
+ F FDK+ G I+ +E + G S S EDC R D D G +++DE MT
Sbjct: 117 AVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDDSGDLDVDE----MT 172
Query: 180 R 180
R
Sbjct: 173 R 173
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 86 IFQVVDLDGDGFIDFKEFMEAHKKGGGIRTM--DIQSAFRTFDKNDDGKISAEEI 138
+F + D DG G I E+ +A+ K GI D ++ FR D +D G + +E+
Sbjct: 118 VFDIFDKDGSGTITLDEW-KAYGKISGISPSQEDCEATFRHCDLDDSGDLDVDEM 171
>pdb|2I18|A Chain A, The Refined Structure Of C-Terminal Domain Of An Ef-Hand
Calcium Binding Protein From Entamoeba Histolytica
Length = 64
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175
++ ++ D + DGK++ EE+ ++ G +E + V D +GDG + ++EF+
Sbjct: 7 LKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADANGDGYITLEEFL 60
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
D+ +K ++ D + DGK+++ E + + G + +V K D +GDG+I +E
Sbjct: 3 DKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMK----ADANGDGYITLEE 58
Query: 103 FME 105
F+E
Sbjct: 59 FLE 61
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 86 IFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILE 140
+++++D+DGDG + +E KK G + D N DG I+ EE LE
Sbjct: 10 LYKLMDVDGDGKLTKEEVTSFFKKHG---IEKVAEQVMKADANGDGYITLEEFLE 61
>pdb|1XVJ|A Chain A, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
pdb|1XVJ|B Chain B, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
Length = 109
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESC---SLEDCRKMVRAVDTDGDGMVNMDE 173
D++ F DK+ G I +E+ +L+ S ++ + ++ A D DG G + ++E
Sbjct: 42 DVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGSGKIEVEE 101
Query: 174 FMTMMTRS 181
F T++ S
Sbjct: 102 FSTLVAES 109
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQAS---MISEVPKIFQVVDLDGDGFIDFK 101
+++K+VF D +K G I + E +IL+ + E + D DG G I+ +
Sbjct: 41 DDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGSGKIEVE 100
Query: 102 EF 103
EF
Sbjct: 101 EF 102
>pdb|1CDP|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
pdb|4CPV|A Chain A, Refined Crystal Structure Of Calcium-Liganded Carp
Parvalbumin 4.25 At 1.5-Angstroms Resolution
pdb|5CPV|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
Length = 109
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRL-GESCSLED--CRKMVRAVDTDGDGMVNMDE 173
D++ AF D++ G I +E+ L+ ++ +L D + ++A D+DGDG + +DE
Sbjct: 43 DVKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGETKTFLKAGDSDGDGKIGVDE 102
Query: 174 FMTMM 178
F ++
Sbjct: 103 FTALV 107
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 67 YKAILRAIGQASMISE-VPKIFQVVDLDGDGFI---DFKEFMEAHKKGG-GIRTMDIQSA 121
+KA +G S ++ V K F ++D D GFI + K F++ K + + ++
Sbjct: 27 HKAFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGETKTF 86
Query: 122 FRTFDKNDDGKISAEEILEMLR 143
+ D + DGKI +E +++
Sbjct: 87 LKAGDSDGDGKIGVDEFTALVK 108
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 37 LPTFQADRNE---MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISE-VPKIFQVVDL 92
L F+ ++ E RVFD FD+ +G + E+ L + I + + FQ+ DL
Sbjct: 74 LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDL 133
Query: 93 DGDGFI---DFKEFMEAHKKGGGIRTMD------IQSAFRTFDKNDDGKISAEEILEMLR 143
GFI + K+ + A G+ D I F D DGKI EE ++
Sbjct: 134 KQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVL 193
Query: 144 R 144
R
Sbjct: 194 R 194
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 59 DGKISQMEYK-AILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMD 117
DG I++ E++ A+ + + S+ ++ ++F + D +G + F+EF A +D
Sbjct: 64 DGLINKEEFQLALFKTNKKESLFAD--RVFDLFDTKHNGILGFEEFARALSVFHPNAPID 121
Query: 118 --IQSAFRTFDKNDDGKISAEEILEM-LRRLGES------CSLED-CRKMVRAVDTDGDG 167
I +F+ +D G I +E+ +M + L ES +ED K DT DG
Sbjct: 122 DKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDG 181
Query: 168 MVNMDEFMTMMTRSMKL 184
++ +E+ +++ R L
Sbjct: 182 KIDKEEWRSLVLRHPSL 198
>pdb|1UHH|A Chain A, Crystal Structure Of Cp-Aequorin
pdb|1UHH|B Chain B, Crystal Structure Of Cp-Aequorin
pdb|1UHJ|A Chain A, Crystal Structure Of Br-Aequorin
pdb|1UHJ|B Chain B, Crystal Structure Of Br-Aequorin
Length = 191
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107
+FD D +++G I+ E+KA +A G + + F+V D+D G +D E H
Sbjct: 114 LFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEXTRQH 171
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 30/168 (17%)
Query: 33 NSSLLPTFQADR--NEMKRVFDRFDSNKDGKISQME--YKA---ILRAIGQASMISEVPK 85
NS L F R K F+ D N +GKIS E YKA ++ +G ++ K
Sbjct: 2 NSKLTSDFDNPRWIGRHKHXFNFLDVNHNGKISLDEXVYKASDIVINNLGATPEQAKRHK 61
Query: 86 IFQVVDLDGDGF-----IDFKEFMEAHKKGGGIRTMDIQ---------------SAFRTF 125
G G D+ ++E KK + T +++ + F
Sbjct: 62 DAVEAFFGGAGXKYGVETDWPAYIEGWKK---LATDELEKYAKNEPTLIRIWGDALFDIV 118
Query: 126 DKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
DK+ +G I+ +E + G S EDC + R D D G +++DE
Sbjct: 119 DKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDE 166
>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
Muscle Of The Leopard Shark (Triakis Semifasciata). The
First X-Ray Study Of An Alpha-Parvalbumin
Length = 109
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 96 GFIDFKEFMEAHKKG-GGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL---GESCSL 151
G D+K F H G G ++ F DK+ G I EE+ +L+ G +
Sbjct: 22 GTFDYKRFF--HLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLND 79
Query: 152 EDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181
+ + ++ A D+D DG + DEF M+ ++
Sbjct: 80 TETKALLAAGDSDHDGKIGADEFAKMVAQA 109
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 66 EYKAILRAIG-QASMISEVPKIFQVVDLDGDGFIDFKEF------MEAHKKGGGIRTMDI 118
+YK +G + ++V ++F+++D D GFI+ +E AH G + +
Sbjct: 25 DYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAH--GRDLNDTET 82
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRR 144
++ D + DGKI A+E +M+ +
Sbjct: 83 KALLAAGDSDHDGKIGADEFAKMVAQ 108
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 7 LDFQYKISKNKFLRKPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQME 66
+++ +I+ +FL +L +S ++ + PT R VFD FD + G I+ E
Sbjct: 77 MEYGKEIAFPQFLDGFKQLATSELKKWARNEPTLI--REWGDAVFDIFDKDGSGTITLDE 134
Query: 67 YKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107
+KA + G + + F+ DLD G +D E H
Sbjct: 135 WKAYGKISGISPSQEDCEATFRHCDLDNSGDLDVDEMTRQH 175
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179
+ F FDK+ G I+ +E + G S S EDC R D D G +++DE MT
Sbjct: 117 AVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNSGDLDVDE----MT 172
Query: 180 R 180
R
Sbjct: 173 R 173
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
+ R F + D + + E++ L +G +E + + D +G G +D +EF+ A
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRA 98
Query: 107 HKKG-GGIRTMDIQSAFRTFDKNDDGKISAEEILEMLR-------RLGESCSLEDCRKMV 158
+ R I +AF D++ DG ++ +++ + R GE E R+ +
Sbjct: 99 LRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFL 158
Query: 159 RAVD-TDGDGMVNMDEF 174
D ++ DG V + EF
Sbjct: 159 DNFDSSEKDGQVTLAEF 175
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 122 FRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181
FR D++ + A+E + L +LG + + R D +G G ++++EF+ +
Sbjct: 43 FRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPP 102
Query: 182 M 182
M
Sbjct: 103 M 103
>pdb|2KQY|A Chain A, Solution Structure Of Avian Thymic Hormone
Length = 108
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSL---EDCRKMVRAVDTDGDGMVNMDEF 174
I+ F D++ G I EE+ L+ S + + + + A DTDGDG + ++EF
Sbjct: 43 IKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEF 102
Query: 175 MTMM 178
+++
Sbjct: 103 QSLV 106
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 67 YKAILRAIGQASMIS-EVPKIFQVVDLDGDGFIDFKE---FMEAHKKGGGIRTMDIQSAF 122
YK+ +G +S ++ K+F ++D D GFI+ +E F++ + T AF
Sbjct: 26 YKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAF 85
Query: 123 RTF-DKNDDGKISAEEILEMLR 143
D + DGKI EE +++
Sbjct: 86 LAAGDTDGDGKIGVEEFQSLVK 107
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMI---SEVPKIFQVVDLDGDGFIDFK 101
+++K+VF D +K G I + E + L+ ++ + +E D DGDG I +
Sbjct: 41 DQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVE 100
Query: 102 EF 103
EF
Sbjct: 101 EF 102
>pdb|3H4S|E Chain E, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 135
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 140 EMLRR----LG-ESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180
E LRR LG E S ED + MVR D DGDG +N EF +M R
Sbjct: 60 ESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVR 105
>pdb|3FS7|A Chain A, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|B Chain B, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|C Chain C, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|D Chain D, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|E Chain E, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|F Chain F, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|G Chain G, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|H Chain H, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
Length = 109
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSL---EDCRKMVRAVDTDGDGMVNMDEF 174
I+ F D++ G I EE+ L+ S + + + + A DTDGDG + ++EF
Sbjct: 44 IKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEF 103
Query: 175 MTMM 178
+++
Sbjct: 104 QSLV 107
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 67 YKAILRAIGQASMIS-EVPKIFQVVDLDGDGFIDFKE---FMEAHKKGGGIRTMDIQSAF 122
YK+ +G +S ++ K+F ++D D GFI+ +E F++ + T AF
Sbjct: 27 YKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAF 86
Query: 123 RTF-DKNDDGKISAEEILEMLR 143
D + DGKI EE +++
Sbjct: 87 LAAGDTDGDGKIGVEEFQSLVK 108
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMI---SEVPKIFQVVDLDGDGFIDFK 101
+++K+VF D +K G I + E + L+ ++ + +E D DGDG I +
Sbjct: 42 DQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVE 101
Query: 102 EF 103
EF
Sbjct: 102 EF 103
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109
+F+ FD+ + G + ++ L + + ++ ++ F + D++ DG+I+ +E M+ K
Sbjct: 58 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 117
Query: 110 GG---GIRTMDIQSA----------FRTFDKNDDGKISAEEILE 140
G T + + F+ DKN DG ++ +E LE
Sbjct: 118 IYDMMGAYTYPVLAEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE 161
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 31/122 (25%)
Query: 75 GQASMISEVPKIFQVVDLDGDGFIDFKEFMEA---------HKKGGGIRTMDIQSAFRTF 125
G AS + +F D G + F++F+ A H+K ++ F +
Sbjct: 49 GDASTYAHY--LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEK--------LRWTFNLY 98
Query: 126 DKNDDGKISAEEILEMLRR------------LGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
D N DG I+ EE++++++ L E + + +D + DG+V +DE
Sbjct: 99 DINKDGYINKEEMMDIVKAIYDMMGAYTYPVLAEDTPRQHVDVFFQKMDKNKDGIVTLDE 158
Query: 174 FM 175
F+
Sbjct: 159 FL 160
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAI-------GQASMISEVPK-----IFQVVD 91
+++ F+ +D NKDG I++ E I++AI + + P+ FQ +D
Sbjct: 88 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGAYTYPVLAEDTPRQHVDVFFQKMD 147
Query: 92 LDGDGFIDFKEFMEAHKKGGGI 113
+ DG + EF+E+ ++ I
Sbjct: 148 KNKDGIVTLDEFLESCQEDDNI 169
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 34/140 (24%)
Query: 60 GKISQMEYKAILRAI---GQASMISEVPKIFQVVDLDGDGFIDFKEFMEA---------H 107
G +++ +K I G AS + +F D G + F++F+ A H
Sbjct: 34 GVVNEETFKQIYAQFFPHGDASTYAHY--LFNAFDTTQTGSVKFEDFVTALSILLRGTVH 91
Query: 108 KKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRR------------LGESCSLEDCR 155
+K ++ F +D N DG I+ EE++++++ L E +
Sbjct: 92 EK--------LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVD 143
Query: 156 KMVRAVDTDGDGMVNMDEFM 175
+ +D + DG+V +DEF+
Sbjct: 144 VFFQKMDKNKDGIVTLDEFL 163
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109
+F+ FD+ + G + ++ L + + ++ ++ F + D++ DG+I+ +E M+ K
Sbjct: 61 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVK- 119
Query: 110 GGGIRTM----------------DIQSAFRTFDKNDDGKISAEEILE 140
I M + F+ DKN DG ++ +E LE
Sbjct: 120 --AIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE 164
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAI----GQAS---MISEVPK-----IFQVVD 91
+++ F+ +D NKDG I++ E I++AI G+ + + + P+ FQ +D
Sbjct: 91 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 150
Query: 92 LDGDGFIDFKEFMEAHKKGGGI 113
+ DG + EF+E+ ++ I
Sbjct: 151 KNKDGIVTLDEFLESXQEDDNI 172
>pdb|1YX7|A Chain A, Nmr Structure Of Calsensin, Energy Minimized Average
Structure.
pdb|1YX8|A Chain A, Nmr Structure Of Calsensin, 20 Low Energy Structures
Length = 83
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 117 DIQSAFRTFDKNDDGKISAEEI------LEMLRRLGESCSLEDCRKMVRAVDTDGDGMVN 170
++++AF+ D N DG ++A E+ L+ + L + E K+++ D + DG ++
Sbjct: 8 ELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKIS 67
Query: 171 MDEFM 175
+EF+
Sbjct: 68 KEEFL 72
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAIL------RAIGQASMISEVPKIFQVVDLDGDGF 97
+ E++ F + D+N DG ++ +E + + +A+ + + K+ ++ D + DG
Sbjct: 6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGK 65
Query: 98 IDFKEFMEAH 107
I +EF+ A+
Sbjct: 66 ISKEEFLNAN 75
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 81 SEVPKIFQVVDLDGDGFI---DFKEFM---EAHKKGGGIRTMDIQSAF-RTFDKNDDGKI 133
+E+ F+ +D +GDG++ + + FM +A+K + + + + DKN DGKI
Sbjct: 7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKI 66
Query: 134 SAEEIL----EMLRRL 145
S EE L E+L +L
Sbjct: 67 SKEEFLNANAELLCQL 82
>pdb|1A75|B Chain B, Whiting Parvalbumin
Length = 109
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEI---LEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
DI+ AF D++ G I +E+ L++ + + + + + ++A D+DGDG + ++E
Sbjct: 43 DIKKAFVFIDQDKSGFIEEDELKLFLQVFKAGARALTDAETKAFLKAGDSDGDGAIGVEE 102
Query: 174 FMTMM 178
++ ++
Sbjct: 103 WVALV 107
>pdb|1A75|A Chain A, Whiting Parvalbumin
Length = 108
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEI---LEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
DI+ AF D++ G I +E+ L++ + + + + + ++A D+DGDG + ++E
Sbjct: 42 DIKKAFVFIDQDKSGFIEEDELKLFLQVFKAGARALTDAETKAFLKAGDSDGDGAIGVEE 101
Query: 174 FMTMM 178
++ ++
Sbjct: 102 WVALV 106
>pdb|1BOD|A Chain A, The Solution Structures Of Mutant Calbindin D9k's, As
Determined By Nmr, Show That The Calcium Binding Site
Can Adopt Different Folds
Length = 74
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 45 NEMKRVFDRFDSNKDGK--------ISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDG 96
E+K +F+++D DG+ + Q E+ ++L+ +S + ++F+ +D +GDG
Sbjct: 5 EELKGIFEKYDKEGDGQLSKEELKLLLQTEFPSLLKG------MSTLDELFEELDKNGDG 58
Query: 97 FIDFKEFMEAHKK 109
+ F+EF KK
Sbjct: 59 EVSFEEFQVLVKK 71
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ 76
P+ + + +F+ D N DG++S E++ +++ I Q
Sbjct: 35 FPSLLKGMSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 74
>pdb|1B8R|A Chain A, Parvalbumin
Length = 108
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRL-GESCSLED--CRKMVRAVDTDGDGMVNMDE 173
D++ AF D++ G I +E+ L+ ++ +L D + ++A D+DGDG + +DE
Sbjct: 42 DVKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGETKTFLKAGDSDGDGKIGVDE 101
Query: 174 FMTMM 178
+ ++
Sbjct: 102 WTALV 106
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 67 YKAILRAIGQASMISE-VPKIFQVVDLDGDGFI---DFKEFMEAHKKGG-GIRTMDIQSA 121
+KA +G S ++ V K F ++D D GFI + K F++ K + + ++
Sbjct: 26 HKAFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGETKTF 85
Query: 122 FRTFDKNDDGKISAEEILEMLR 143
+ D + DGKI +E +++
Sbjct: 86 LKAGDSDGDGKIGVDEWTALVK 107
>pdb|3I5G|B Chain B, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|B Chain B, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|B Chain B, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|B Chain B, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 153
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
E+K F D ++DG I + K + ++G+ E+ + + + G ++F F+
Sbjct: 17 ELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK----ECPGQLNFTAFLT 72
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159
K G +++AF FD++ G I + + ++L +G++ S E+ + + +
Sbjct: 73 LFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWK 128
>pdb|1PON|A Chain A, Site Iii-Site Iv Troponin C Heterodimer, Nmr
pdb|1CTA|A Chain A, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTA|B Chain B, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTD|A Chain A, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTD|B Chain B, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
Length = 36
Score = 32.7 bits (73), Expect = 0.11, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLG 146
++ +AFR FDKN DG I EE+ E+LR G
Sbjct: 6 ELANAFRIFDKNADGYIDIEELGEILRATG 35
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109
+F+ FD+ + G + ++ L + + ++ ++ F + D++ DG+I+ +E M+ K
Sbjct: 94 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVK- 152
Query: 110 GGGIRTM----------------DIQSAFRTFDKNDDGKISAEEILE 140
I M + F+ DKN DG ++ +E LE
Sbjct: 153 --AIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE 197
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 34/140 (24%)
Query: 60 GKISQMEYKAILRAI---GQASMISEVPKIFQVVDLDGDGFIDFKEFMEA---------H 107
G +++ +K I G AS + +F D G + F++F+ A H
Sbjct: 67 GVVNEETFKQIYAQFFPHGDASTYAHY--LFNAFDTTQTGSVKFEDFVTALSILLRGTVH 124
Query: 108 KKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRR------------LGESCSLEDCR 155
+K ++ F +D N DG I+ EE++++++ L E +
Sbjct: 125 EK--------LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVD 176
Query: 156 KMVRAVDTDGDGMVNMDEFM 175
+ +D + DG+V +DEF+
Sbjct: 177 VFFQKMDKNKDGIVTLDEFL 196
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAI----GQAS---MISEVPK-----IFQVVD 91
+++ F+ +D NKDG I++ E I++AI G+ + + + P+ FQ +D
Sbjct: 124 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 183
Query: 92 LDGDGFIDFKEFMEAHKKGGGI 113
+ DG + EF+E+ ++ I
Sbjct: 184 KNKDGIVTLDEFLESCQEDDNI 205
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 50 VFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109
+F+ FD+ + G + ++ L + + ++ ++ F + D++ DG+I+ +E M+ K
Sbjct: 58 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVK- 116
Query: 110 GGGIRTM----------------DIQSAFRTFDKNDDGKISAEEILE 140
I M + F+ DKN DG ++ +E LE
Sbjct: 117 --AIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE 161
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 31/122 (25%)
Query: 75 GQASMISEVPKIFQVVDLDGDGFIDFKEFMEA---------HKKGGGIRTMDIQSAFRTF 125
G AS + +F D G + F++F+ A H+K ++ F +
Sbjct: 49 GDASTYAHY--LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEK--------LRWTFNLY 98
Query: 126 DKNDDGKISAEEILEMLRR------------LGESCSLEDCRKMVRAVDTDGDGMVNMDE 173
D N DG I+ EE++++++ L E + + +D + DG+V +DE
Sbjct: 99 DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDE 158
Query: 174 FM 175
F+
Sbjct: 159 FL 160
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAI----GQAS---MISEVPK-----IFQVVD 91
+++ F+ +D NKDG I++ E I++AI G+ + + + P+ FQ +D
Sbjct: 88 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 147
Query: 92 LDGDGFIDFKEFMEAHKKGGGI 113
+ DG + EF+E+ ++ I
Sbjct: 148 KNKDGIVTLDEFLESCQEDDNI 169
>pdb|3LI6|A Chain A, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|D Chain D, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|G Chain G, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|J Chain J, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
Length = 66
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 50 VFDRFDSNKDGKISQMEYKAIL---RAIGQASMISEVPKIFQVVDLDGDGFIDFKEF 103
+F D N DG +S E KA + RAI ++ IF+ +D DG+G ID EF
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQ---LIFKSIDADGNGEIDQNEF 58
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
++ F+ D N DG +S EE+ + + + + + + +++D DG+G ++ +EF
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEF 58
>pdb|1TTX|A Chain A, Solution Stucture Of Human Beta Parvalbumin (Oncomodulin)
Refined With A Paramagnetism Based Strategy
Length = 109
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 81 SEVPKIFQVVDLDGDGFIDFKE---FMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAE 136
++V +F+ +D D G++D +E F++ + G + + +S D + DGKI AE
Sbjct: 42 NQVKDVFRFIDNDQSGYLDEEELKFFLQKFESGARELTESETKSLMAAADNDGDGKIGAE 101
Query: 137 EILEMLR 143
E EM+
Sbjct: 102 EFQEMVH 108
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE----DCRKMVRAVDTDGDGMVNMDE 173
++ FR D + G + EE+ L++ ES + E + + ++ A D DGDG + +E
Sbjct: 44 VKDVFRFIDNDQSGYLDEEELKFFLQKF-ESGARELTESETKSLMAAADNDGDGKIGAEE 102
Query: 174 FMTMM 178
F M+
Sbjct: 103 FQEMV 107
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRL---GESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
++ FR D + G + +E+ L++ + + + ++ A D DGDG + DEF
Sbjct: 43 VKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEF 102
Query: 175 MTMM 178
M+
Sbjct: 103 QEMV 106
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 81 SEVPKIFQVVDLDGDGFID---FKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAE 136
S+V IF+ +D D G++D K F++ + + + +S D + DGKI A+
Sbjct: 41 SQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGAD 100
Query: 137 EILEMLR 143
E EM+
Sbjct: 101 EFQEMVH 107
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 5/143 (3%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
Q + K F D N+DG I + + + A+G+ ++ +E + + G I+F
Sbjct: 8 QTQIQDFKEAFTVIDQNRDGIIDKDDLRETFAAMGRLNVKNEE---LDAMIKEASGPINF 64
Query: 101 KEF--MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMV 158
F M K G I AF+ D + G I + E+L + + E+ + M
Sbjct: 65 TVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTQCDRFTPEEIKNMW 124
Query: 159 RAVDTDGDGMVNMDEFMTMMTRS 181
A D G V+ ++T
Sbjct: 125 AAFPPDVAGNVDYKNICYVITHG 147
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105
+ K F D N DG I + + + A+G+ ++ +E + + G I+F F+
Sbjct: 26 DFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEE---LDAMIKEASGPINFTVFLT 82
Query: 106 --AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDT 163
K G I AF+ D + G I + E+L G + E+ + M A
Sbjct: 83 MFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPP 142
Query: 164 DGDGMVNMDEFMTMMTRS 181
D G V+ ++T
Sbjct: 143 DVAGNVDYKNICYVITHG 160
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 5/143 (3%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDF 100
+ + + K F D N DG I + + + A+G+ ++ +E + + G I+F
Sbjct: 3 ETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEE---LDAMIKEASGPINF 59
Query: 101 KEFME--AHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMV 158
F+ K G I AF+ D + G I + E+L G + E+ + M
Sbjct: 60 TVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMW 119
Query: 159 RAVDTDGDGMVNMDEFMTMMTRS 181
A D G V+ ++T
Sbjct: 120 AAFPPDVAGNVDYKNICYVITHG 142
>pdb|3SJS|A Chain A, Crystal Structure Of Ure3-Binding Protein From Entamoeba
Histolytica, (D127a,N129a) Mutant, Native Form
pdb|3SIA|A Chain A, Crystal Structure Of Ure3-Binding Protein, (D127a,N129a)
Mutant, Iodide Phased
Length = 220
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 26/131 (19%)
Query: 27 SSRDRQNSSLLPTFQADRNEMKRVFDRF---DSNKDG--KISQM---EYKAILRAIGQAS 78
S R+ LL T D + R++ F D ++ G +I+++ ++ +R Q +
Sbjct: 32 SVRNTWWFPLLNTIPLD--QYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTA 89
Query: 79 MISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKND---DGKISA 135
+ ++ ++ D D +G I F EFM +K ++ A+ F N G +
Sbjct: 90 L-----RMMRIFDTDFNGHISFYEFMAMYKF--------MELAYNLFVMNARARSGTLEP 136
Query: 136 EEILEMLRRLG 146
EIL L++LG
Sbjct: 137 HEILPALQQLG 147
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTM 177
I F D++ G + E++ G S + +M+R DTD +G ++ EFM M
Sbjct: 53 IYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAM 112
>pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
Length = 198
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 130 DGKISAEEILEMLRRLG-----ESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
DG+I A+E+ L + G + +LE CR MV +D D G + +EF
Sbjct: 46 DGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 95
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 56 SNKDGKISQMEYKAILRAIGQAS-----MISEVPKIFQVVDLDGDGFIDFKEFMEAHKKG 110
+ +DG+I E + L G A + + ++D D G + F EF E
Sbjct: 43 AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL 102
Query: 111 GGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVN 170
G R F +FD + G + +E+ + L +G S + + + T+G +
Sbjct: 103 NGWR-----QHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--IT 155
Query: 171 MDEFMTMMTR 180
D+++ +
Sbjct: 156 FDDYIACCVK 165
>pdb|2JC2|A Chain A, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|B Chain B, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|C Chain C, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|D Chain D, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
Length = 198
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 130 DGKISAEEILEMLRRLG-----ESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
DG+I A+E+ L + G + +LE CR MV +D D G + +EF
Sbjct: 46 DGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 95
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 30.4 bits (67), Expect = 0.59, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 126 DKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182
D NDDGK+++ ++ + R + ++ S K + D + DG VN + +T+++R +
Sbjct: 575 DVNDDGKVNSTDLTLLKRYVLKAVSTLPSSKAEKNADVNRDGRVNSSD-VTILSRYL 630
>pdb|1GJY|A Chain A, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|B Chain B, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|C Chain C, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|D Chain D, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
Length = 167
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 130 DGKISAEEILEMLRRLG-----ESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
DG+I A+E+ L + G + +LE CR MV +D D G + +EF
Sbjct: 15 DGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 64
>pdb|1B9A|A Chain A, Parvalbumin (Mutation;d51a, F102w)
Length = 108
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRL-GESCSLED--CRKMVRAVDTDGDGMVNMDE 173
D++ AF ++ G I +E+ L+ ++ +L D + ++A D+DGDG + +DE
Sbjct: 42 DVKKAFAIIAQDKSGFIEEDELKLFLQNFKADARALTDGETKTFLKAGDSDGDGKIGVDE 101
Query: 174 FMTMM 178
+ ++
Sbjct: 102 WTALV 106
>pdb|2KGR|A Chain A, Solution Structure Of Protein Itsn1 From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr5524a
Length = 111
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAIL--RAIGQASMISEVPKIFQVVDLDGDGFI 98
Q+ R + +++F+ D G ++ + + IL ++ QA + S I+ + D+D DG +
Sbjct: 10 QSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLAS----IWNLSDIDQDGKL 65
Query: 99 DFKEFMEA 106
+EF+ A
Sbjct: 66 TAEEFILA 73
>pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With Substrate
Analogue Gmpcpp
pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
Scaffold
pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
With The Inhibitor Alpha-Amanitin
pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
D
pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
E
pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 1733
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 75 GQASMISEVPKIFQVVDLDGDGFIDFKE---FMEAHKKGGGIRTMDIQSAFRTFDKNDDG 131
G+A++ EV + V+ DG +++++ ++ GG+ ++ F++++ G
Sbjct: 1344 GRAALYKEV---YNVIASDGS-YVNYRHMALLVDVMTTQGGLTSVTRHG----FNRSNTG 1395
Query: 132 KI---SAEEILEMLRRLGESCSLEDCRKMVRAV 161
+ S EE +E+L G S L+DCR + V
Sbjct: 1396 ALMRCSFEETVEILFEAGASAELDDCRGVSENV 1428
>pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
Length = 1732
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 75 GQASMISEVPKIFQVVDLDGDGFIDFKE---FMEAHKKGGGIRTMDIQSAFRTFDKNDDG 131
G+A++ EV + V+ DG +++++ ++ GG+ ++ F++++ G
Sbjct: 1344 GRAALYKEV---YNVIASDGS-YVNYRHMALLVDVMTTQGGLTSVTRHG----FNRSNTG 1395
Query: 132 KI---SAEEILEMLRRLGESCSLEDCRKMVRAV 161
+ S EE +E+L G S L+DCR + V
Sbjct: 1396 ALMRCSFEETVEILFEAGASAELDDCRGVSENV 1428
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 129 DDGKISAEEILEMLRRL--------GESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
DD ++SA E++ +L ++ + ++ CR MV +D+D G + +EF
Sbjct: 27 DDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 80
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 40 FQADRNEMKR---VFDRFDSNKDGKISQMEYKAILRAIG---QASMISEVPKIFQVVDLD 93
F+ N +K+ ++ RFD+++ G I E A G + S + + + D
Sbjct: 80 FKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS----D 135
Query: 94 GDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISA--EEILEM 141
G +DF F+ +R + AFR+ DKN G+I +E L++
Sbjct: 136 ETGNMDFDNFISCL-----VRLDAMFRAFRSLDKNGTGQIQVNIQEWLQL 180
>pdb|3S6C|A Chain A, Structure Of Human Cd1e
Length = 392
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 64 QMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFR 123
Q+EY ++ + M P+IF + G F+ F+ G GIR +I
Sbjct: 199 QLEYPFEIQILAGCRM--NAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLN 256
Query: 124 TFDKNDDGKISAEEILEMLRRLGESC 149
+ + +EIL+ L LG +C
Sbjct: 257 RY-------LDIKEILQSL--LGHTC 273
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 129 DDGKISAEEILEMLRRL--------GESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
DD ++SA E++ +L ++ + ++ CR MV +D+D G + +EF
Sbjct: 16 DDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 69
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 40 FQADRNEMKR---VFDRFDSNKDGKISQMEYKAILRAIG---QASMISEVPKIFQVVDLD 93
F+ N +K+ ++ RFD+++ G I E A G + S + + + D
Sbjct: 69 FKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS----D 124
Query: 94 GDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISA--EEILEM 141
G +DF F+ +R + AFR+ DKN G+I +E L++
Sbjct: 125 ETGNMDFDNFISCL-----VRLDAMFRAFRSLDKNGTGQIQVNIQEWLQL 169
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 30.0 bits (66), Expect = 0.85, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVD---TDGDGMVNMDEF 174
I S R DKN D K++ +E+ + L+ L RK+ R D TD ++ F
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Query: 175 MTMMTRSMKL 184
M+T+ ++
Sbjct: 73 YKMLTQRAEI 82
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 30.0 bits (66), Expect = 0.86, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVD---TDGDGMVNMDEF 174
I S R DKN D K++ +E+ + L+ L RK+ R D TD ++ F
Sbjct: 11 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 70
Query: 175 MTMMTRSMKL 184
M+T+ ++
Sbjct: 71 YKMLTQRAEI 80
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 129 DDGKISAEEILEMLRRL--------GESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
DD ++SA E++ +L ++ + ++ CR MV +D+D G + +EF
Sbjct: 16 DDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 69
>pdb|1CB1|A Chain A, Three-Dimensional Solution Structure Of Ca2+-Loaded
Porcine Calbindin D9k Determined By Nuclear Magnetic
Resonance Spectroscopy
Length = 78
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEV--PK----IFQVVDLDG 94
Q E+K +F+++ + K+G +Q+ K L+ + QA S + P+ +FQ +D +G
Sbjct: 3 QKSPAELKSIFEKY-AAKEGDPNQLS-KEELKQLIQAEFPSLLKGPRTLDDLFQELDKNG 60
Query: 95 DGFIDFKEFMEAHKK 109
DG + F+EF KK
Sbjct: 61 DGEVSFEEFQVLVKK 75
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 112 GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGE 147
G RT+D F+ DKN DG++S EE +++++ +
Sbjct: 45 GPRTLD--DLFQELDKNGDGEVSFEEFQVLVKKISQ 78
>pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 75 GQASMISEVPKIFQVVDLDGDGFIDFKE---FMEAHKKGGGIRTMDIQSAFRTFDKNDDG 131
G+A++ EV + V+ DG +++++ ++ GG+ ++ F++++ G
Sbjct: 1344 GRAALYKEV---YNVIASDGS-YVNYRHMALLVDVMTTQGGLTSVTRHG----FNRSNTG 1395
Query: 132 KI---SAEEILEMLRRLGESCSLEDCR 155
+ S EE +E+L G S L+DCR
Sbjct: 1396 ALMRCSFEETVEILFEAGASAELDDCR 1422
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 129 DDGKISAEEILEMLRRL--------GESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
DD ++SA E++ +L ++ + ++ CR MV +D+D G + +EF
Sbjct: 27 DDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 80
>pdb|2PIC|A Chain A, E. Coli Lytic Transglycosylase Mlta-D308a In Apo-2 Form
Length = 345
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 18/79 (22%)
Query: 89 VVDLDGDGFIDFKE------FMEAHKKGGGIRTMDIQSAFRTFDKN--DDGKISAEEI-L 139
++D+ G G+IDF + F A K G A+R+ K D G++ E++ +
Sbjct: 158 IMDVQGSGYIDFGDGSPLNFFSYAGKNG---------HAYRSIGKVIIDRGEVKKEDMSM 208
Query: 140 EMLRRLGESCSLEDCRKMV 158
+ +R GE+ S + R+++
Sbjct: 209 QAIRHWGETHSEAEVRELL 227
>pdb|2PJJ|A Chain A, E. Coli Lytic Transglycosylase Mlta-D308a In Apo-1 Form
Length = 345
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 18/79 (22%)
Query: 89 VVDLDGDGFIDFKE------FMEAHKKGGGIRTMDIQSAFRTFDKN--DDGKISAEEI-L 139
++D+ G G+IDF + F A K G A+R+ K D G++ E++ +
Sbjct: 158 IMDVQGSGYIDFGDGSPLNFFSYAGKNG---------HAYRSIGKVLIDRGEVKKEDMSM 208
Query: 140 EMLRRLGESCSLEDCRKMV 158
+ +R GE+ S + R+++
Sbjct: 209 QAIRHWGETHSEAEVRELL 227
>pdb|2GAE|A Chain A, Crystal Structure Of Mlta From E. Coli
Length = 346
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 18/79 (22%)
Query: 89 VVDLDGDGFIDFKE------FMEAHKKGGGIRTMDIQSAFRTFDKN--DDGKISAEEI-L 139
++D+ G G+IDF + F A K G A+R+ K D G++ E++ +
Sbjct: 159 IMDVQGSGYIDFGDGSPLNFFSYAGKNG---------HAYRSIGKVLIDRGEVKKEDMSM 209
Query: 140 EMLRRLGESCSLEDCRKMV 158
+ +R GE+ S + R+++
Sbjct: 210 QAIRHWGETHSEAEVRELL 228
>pdb|2AE0|X Chain X, Crystal Structure Of Mlta From Escherichia Coli Reveals A
Unique Lytic Transglycosylase Fold
Length = 345
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 18/79 (22%)
Query: 89 VVDLDGDGFIDFKE------FMEAHKKGGGIRTMDIQSAFRTFDKN--DDGKISAEEI-L 139
++D+ G G+IDF + F A K G A+R+ K D G++ E++ +
Sbjct: 158 IMDVQGSGYIDFGDGSPLNFFSYAGKNG---------HAYRSIGKVLIDRGEVKKEDMSM 208
Query: 140 EMLRRLGESCSLEDCRKMV 158
+ +R GE+ S + R+++
Sbjct: 209 QAIRHWGETHSEAEVRELL 227
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 129 DDGKISAEEILEMLRRL--------GESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
DD ++SA E++ +L ++ + ++ CR MV +D+D G + +EF
Sbjct: 23 DDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 76
>pdb|2LVV|A Chain A, Nmr Structure Of Tb24
Length = 226
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 49 RVFDRFDSNKDGKISQMEYKAILRAIGQA-SMISEVPKIFQVV---------DLDGDGFI 98
+F +FD+N GK+ E I + + +P I Q + G G
Sbjct: 55 ELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEE 114
Query: 99 DFKEFMEAHKKGGGIRTM-DIQSAFRTFDKNDDGKISAEEILEMLRRLGE-SCSLEDCRK 156
D EF+E I + ++ F T DK+ + +E E L +L E + D
Sbjct: 115 DLVEFLEFRLMLCYIYDIFELTVMFDTMDKDGSLLLELQEFKEALPKLKEWGVDITDATT 174
Query: 157 MVRAVDTDGDGMVNMDEF 174
+ +DT+G G+V DEF
Sbjct: 175 VFNEIDTNGSGVVTFDEF 192
>pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
Length = 165
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 130 DGKISAEEILEMLRRLG-----ESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
DG++ AEE+ L + G SLE CR M+ +D D G + + F
Sbjct: 13 DGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
>pdb|1IJ5|A Chain A, Metal-Free Structure Of Multidomain Ef-Hand Protein,
Cbp40, From True Slime Mold
pdb|1IJ6|A Chain A, Ca2+-Bound Structure Of Multidomain Ef-Hand Protein,
Cbp40, From True Slime Mold
Length = 323
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVP--KIFQVVDLDGDGFI 98
+ D N ++++F + GK S + K +L A I E P K+F +V+ D G +
Sbjct: 118 EEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKY--ADTIPEGPLKKLFVMVENDTKGRM 175
Query: 99 DFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG-ESCSLEDCRKM 157
+ + + + FR D N +G +S +E E RLG + S++D +
Sbjct: 176 SYITLVAVANDLAALV-----ADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDA--L 228
Query: 158 VRAVDTDGDGMVNMDEFMTM 177
R D D V E++ +
Sbjct: 229 FRYADEDESDDVGFSEYVHL 248
>pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
Length = 165
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 130 DGKISAEEILEMLRRLG-----ESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
DG++ AEE+ L + G SLE CR M+ +D D G + + F
Sbjct: 13 DGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
>pdb|2K7O|A Chain A, Ca2+-s100b, Refined With Rdcs
pdb|2K7O|B Chain B, Ca2+-s100b, Refined With Rdcs
Length = 91
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG DF+EFM
Sbjct: 53 VDKVMETLDEDGDGECDFQEFM 74
>pdb|1SYM|A Chain A, 3-D Solution Structure Of Reduced Apo-S100b From Rat, Nmr,
20 Structures
pdb|1SYM|B Chain B, 3-D Solution Structure Of Reduced Apo-S100b From Rat, Nmr,
20 Structures
pdb|1QLK|A Chain A, Solution Structure Of Ca(2+)-Loaded Rat S100b (Betabeta)
Nmr, 20 Structures
pdb|1QLK|B Chain B, Solution Structure Of Ca(2+)-Loaded Rat S100b (Betabeta)
Nmr, 20 Structures
pdb|1B4C|A Chain A, Solution Structure Of Rat Apo-S100b Using Dipolar
Couplings
pdb|1B4C|B Chain B, Solution Structure Of Rat Apo-S100b Using Dipolar
Couplings
pdb|1DT7|A Chain A, Solution Structure Of The C-Terminal Negative Regulatory
Domain Of P53 In A Complex With Ca2+-Bound S100b(Bb)
pdb|1DT7|B Chain B, Solution Structure Of The C-Terminal Negative Regulatory
Domain Of P53 In A Complex With Ca2+-Bound S100b(Bb)
pdb|1MWN|A Chain A, Solution Nmr Structure Of S100b Bound To The High-Affinity
Target Peptide Trtk-12
pdb|1MWN|B Chain B, Solution Nmr Structure Of S100b Bound To The High-Affinity
Target Peptide Trtk-12
pdb|1XYD|A Chain A, Nmr Solution Structure Of Rat Zinc-Calcium-S100b, 20
Structures
pdb|1XYD|B Chain B, Nmr Solution Structure Of Rat Zinc-Calcium-S100b, 20
Structures
Length = 92
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG DF+EFM
Sbjct: 54 VDKVMETLDEDGDGECDFQEFM 75
>pdb|1CFP|A Chain A, S100b (S100beta) Nmr Data Was Collected From A Sample Of
Calcium Free Protein At Ph 6.3 And A Temperature Of 311
K And 1.7-6.9 Mm Concentration, 25 Structures
pdb|1CFP|B Chain B, S100b (S100beta) Nmr Data Was Collected From A Sample Of
Calcium Free Protein At Ph 6.3 And A Temperature Of 311
K And 1.7-6.9 Mm Concentration, 25 Structures
pdb|3CR2|A Chain A, X-ray Structure Of Bovine Zn(2+),ca(2+)-s100b
pdb|3CR5|X Chain X, X-Ray Structure Of Bovine Pnt-Zn(2+),Ca(2+)-S100b
pdb|3CR4|X Chain X, X-Ray Structure Of Bovine Pnt,Ca(2+)-S100b
pdb|3GK1|A Chain A, X-Ray Structure Of Bovine Sbi132,Ca(2+)-S100b
pdb|3GK2|A Chain A, X-Ray Structure Of Bovine Sbi279,Ca(2+)-S100b
pdb|3GK4|X Chain X, X-Ray Structure Of Bovine Sbi523,Ca(2+)-S100b
pdb|3IQO|A Chain A, 1.5 Angstrom X-ray Structure Of Bovine Ca(2+)-s100b
pdb|3IQO|B Chain B, 1.5 Angstrom X-ray Structure Of Bovine Ca(2+)-s100b
pdb|3IQQ|A Chain A, X-Ray Structure Of Bovine Trtk12-Ca(2+)-S100b
pdb|3LLE|A Chain A, X-Ray Structure Of Bovine Sc0322,Ca(2+)-S100b
pdb|3LLE|B Chain B, X-Ray Structure Of Bovine Sc0322,Ca(2+)-S100b
Length = 92
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG DF+EFM
Sbjct: 54 VDKVMETLDSDGDGECDFQEFM 75
>pdb|3OPY|I Chain I, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|J Chain J, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|K Chain K, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|L Chain L, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 351
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 103 FMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVD 162
++ +++ G + +D+ FD N + K+ +ILE L L +C + D + V V
Sbjct: 227 LLDYYQRVGTTKKIDLLLLTNNFDTNMNNKLQQLKILESLNMLKSNCYVLDYQITVDQVT 286
Query: 163 TDGDGMV 169
+ + V
Sbjct: 287 ANFNSYV 293
>pdb|1PSB|A Chain A, Solution Structure Of Calcium Loaded S100b Complexed To A
Peptide From N-Terminal Regulatory Domain Of Ndr Kinase.
pdb|1PSB|B Chain B, Solution Structure Of Calcium Loaded S100b Complexed To A
Peptide From N-Terminal Regulatory Domain Of Ndr Kinase
Length = 91
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG DF+EFM
Sbjct: 53 VDKVMETLDSDGDGECDFQEFM 74
>pdb|3ISL|A Chain A, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
pdb|3ISL|B Chain B, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
Length = 416
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 139 LEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEF 174
+ L+ +GE+C ED +V AV T G V +DE+
Sbjct: 152 IHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEW 187
>pdb|3LK0|A Chain A, X-Ray Structure Of Bovine Sc0067,Ca(2+)-S100b
pdb|3LK0|B Chain B, X-Ray Structure Of Bovine Sc0067,Ca(2+)-S100b
pdb|3LK0|C Chain C, X-Ray Structure Of Bovine Sc0067,Ca(2+)-S100b
pdb|3LK0|D Chain D, X-Ray Structure Of Bovine Sc0067,Ca(2+)-S100b
pdb|3LK1|A Chain A, X-Ray Structure Of Bovine Sc0322,Ca(2+)-S100b
Length = 90
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG DF+EFM
Sbjct: 54 VDKVMETLDSDGDGECDFQEFM 75
>pdb|1MHO|A Chain A, The 2.0 A Structure Of Holo S100b From Bovine Brain
Length = 88
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG DF+EFM
Sbjct: 53 VDKVMETLDSDGDGECDFQEFM 74
>pdb|1MQ1|A Chain A, Ca2+-S100b-Trtk-12 Complex
pdb|1MQ1|B Chain B, Ca2+-S100b-Trtk-12 Complex
pdb|1UWO|A Chain A, Calcium Form Of Human S100b, Nmr, 20 Structures
pdb|1UWO|B Chain B, Calcium Form Of Human S100b, Nmr, 20 Structures
pdb|2PRU|A Chain A, Nmr Structure Of Human Apos100b At 10c
pdb|2PRU|B Chain B, Nmr Structure Of Human Apos100b At 10c
Length = 91
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG DF+EFM
Sbjct: 53 VDKVMETLDNDGDGECDFQEFM 74
>pdb|2H61|C Chain C, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|D Chain D, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|G Chain G, X-ray Structure Of Human Ca2+-loaded S100b
pdb|3D0Y|A Chain A, Crystal Structure Of S100b In The Calcium And Zinc Loaded
State At Ph 6.5
Length = 92
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG DF+EFM
Sbjct: 54 VDKVMETLDNDGDGECDFQEFM 75
>pdb|4FQO|A Chain A, Crystal Structure Of Calcium-loaded S100b Bound To Sbi4211
Length = 89
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG DF+EFM
Sbjct: 54 VDKVMETLDSDGDGECDFQEFM 75
>pdb|2H61|A Chain A, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|B Chain B, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|E Chain E, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|F Chain F, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|H Chain H, X-ray Structure Of Human Ca2+-loaded S100b
pdb|3CZT|X Chain X, Crystal Structure Of S100b In The Calcium And Zinc Loaded
State At Ph 9
pdb|3D0Y|B Chain B, Crystal Structure Of S100b In The Calcium And Zinc Loaded
State At Ph 6.5
pdb|3D10|A Chain A, Crystal Structure Of S100b In The Calcium And Zinc Loaded
State At Ph 10.0
pdb|3D10|B Chain B, Crystal Structure Of S100b In The Calcium And Zinc Loaded
State At Ph 10.0
pdb|3HCM|A Chain A, Crystal Structure Of Human S100b In Complex With S45
pdb|3HCM|B Chain B, Crystal Structure Of Human S100b In Complex With S45
Length = 92
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG DF+EFM
Sbjct: 54 VDKVMETLDNDGDGECDFQEFM 75
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 40 FQADRNEMKR---VFDRFDSNKDGKISQMEYKAILRAIG---QASMISEVPKIFQVVDLD 93
F+ N +K+ ++ RFD+++ G I E A G + S + + + D
Sbjct: 80 FKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS----D 135
Query: 94 GDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISA--EEILEM 141
G +DF F+ +R + AFR+ DKN G+I +E L++
Sbjct: 136 ETGNMDFDNFISCL-----VRLDAMFRAFRSLDKNGTGQIQVNIQEWLQL 180
>pdb|1B8C|A Chain A, Parvalbumin
pdb|1B8C|B Chain B, Parvalbumin
pdb|1B8L|A Chain A, Calcium-Bound D51aE101DF102W TRIPLE MUTANT OF BETA CARP
Parvalbumin
Length = 108
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 117 DIQSAFRTFDKNDDGKISAEEILEMLRRL-GESCSLED--CRKMVRAVDTDGDGMVNMDE 173
D++ AF ++ G I +E+ L+ ++ +L D + ++A D+DGDG + +D+
Sbjct: 42 DVKKAFAIIAQDKSGFIEEDELKLFLQNFKADARALTDGETKTFLKAGDSDGDGKIGVDD 101
Query: 174 FMTMM 178
+ ++
Sbjct: 102 WTALV 106
>pdb|1WY9|A Chain A, Crystal Structure Of Microglia-Specific Protein, Iba1
Length = 147
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 122 FRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
+ FD N +G I + ML +LG + + ++++R V + + + +F+ MM
Sbjct: 54 YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMM 110
>pdb|2ZUY|A Chain A, Crystal Structure Of Exotype Rhamnogalacturonan Lyase Yesx
Length = 620
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 87 FQVVDLDGDGFIDFK-EFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKI-SAEEILEMLR- 143
F V DLDGDG + + + G G D Q+ FR N+ G+I S E L + +
Sbjct: 185 FMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFR----NEQGRILSGPEYLTVFKG 240
Query: 144 RLGESCSLEDCRKMVRAVDTDGDGMVN-MDEFM 175
GE+ + + ++ GDG N MD F+
Sbjct: 241 ETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFL 273
>pdb|3CS1|A Chain A, Flagellar Calcium-binding Protein (fcabp) From T. Cruzi
Length = 219
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 26/149 (17%)
Query: 50 VFDRFDSNKDGKISQME-YKAILRAIGQASMISEVPKIFQVV---------DLDGDGFID 99
+F +FD N+ GK+ E Y L + S V I + L+ G D
Sbjct: 53 LFKKFDKNETGKLXYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSED 112
Query: 100 FKEFMEAHKKGGGIRTM--------DIQSAFRTFDKNDDGKISAEEILEMLRRL-GESCS 150
F EF+E R M ++ F D + + + EE + +L
Sbjct: 113 FVEFLE-------FRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAK 165
Query: 151 LEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179
+ED + + +D +G G V DEF +
Sbjct: 166 VEDPAALFKELDKNGTGSVTFDEFAAWAS 194
>pdb|1E8A|A Chain A, The Three-Dimensional Structure Of Human S100a12
pdb|1E8A|B Chain B, The Three-Dimensional Structure Of Human S100a12
pdb|1GQM|A Chain A, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|B Chain B, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|C Chain C, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|D Chain D, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|E Chain E, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|F Chain F, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|G Chain G, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|H Chain H, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|I Chain I, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|J Chain J, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|K Chain K, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|L Chain L, The Structure Of S100a12 In A Hexameric Form
Length = 91
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 53 RFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
FD+ G++ Q+ K + I + + +IFQ +D + D +DF+EF+
Sbjct: 23 HFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFI 74
>pdb|1ODB|A Chain A, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|B Chain B, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|C Chain C, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|D Chain D, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|E Chain E, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|F Chain F, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|2WC8|A Chain A, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|B Chain B, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|C Chain C, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|D Chain D, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCB|A Chain A, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCB|B Chain B, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCF|A Chain A, Calcium-Free (Apo) S100a12
pdb|2WCF|B Chain B, Calcium-Free (Apo) S100a12
pdb|2WCF|C Chain C, Calcium-Free (Apo) S100a12
pdb|2WCF|D Chain D, Calcium-Free (Apo) S100a12
pdb|2WCF|E Chain E, Calcium-Free (Apo) S100a12
pdb|2WCF|F Chain F, Calcium-Free (Apo) S100a12
Length = 95
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 53 RFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
FD+ G++ Q+ K + I + + +IFQ +D + D +DF+EF+
Sbjct: 27 HFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFI 78
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEV 83
N ++ FD D N DG+++ E K I+ A+ +S++
Sbjct: 98 NRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKI 136
>pdb|2WCE|A Chain A, Calcium-Free (Apo) S100a12
pdb|2WCE|B Chain B, Calcium-Free (Apo) S100a12
Length = 95
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 53 RFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104
FD+ G++ Q+ K + I + + +IFQ +D + D +DF+EF+
Sbjct: 27 HFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFI 78
>pdb|1BOC|A Chain A, The Solution Structures Of Mutant Calbindin D9k's, As
Determined By Nmr, Show That The Calcium Binding Site
Can Adopt Different Folds
Length = 76
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 16/74 (21%)
Query: 46 EMKRVFDRF-DSNKDGK---------ISQMEYKAILRAIGQASMISEVPKIFQVVDLDGD 95
E+K +F+++ D DG + Q E+ ++L+ + S + ++F+ +D +GD
Sbjct: 6 ELKGIFEKYADKEGDGNQLSKEELKLLLQTEFPSLLKGM------STLDELFEELDKNGD 59
Query: 96 GFIDFKEFMEAHKK 109
G + F+EF KK
Sbjct: 60 GEVSFEEFQVLVKK 73
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ 76
P+ + + +F+ D N DG++S E++ +++ I Q
Sbjct: 37 FPSLLKGMSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 76
>pdb|2L50|A Chain A, Solution Structure Of Apo S100a16
pdb|2L50|B Chain B, Solution Structure Of Apo S100a16
pdb|2L51|A Chain A, Solution Structure Of Calcium Bound S100a16
pdb|2L51|B Chain B, Solution Structure Of Calcium Bound S100a16
Length = 102
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 132 KISAEEILEMLRR-----LGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
KIS EML++ L ++ + + K+++ +D + DG ++ DE+ T++
Sbjct: 31 KISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLI 82
>pdb|4FL4|A Chain A, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
pdb|4FL4|D Chain D, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
pdb|4FL4|G Chain G, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
pdb|4FL4|J Chain J, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
Length = 88
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 126 DKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182
D NDDGK+++ ++ + R + ++ S K + D + DG VN + +T+++R +
Sbjct: 24 DVNDDGKVNSTDLTLLKRYVLKAVSTLPSSKAEKNADVNRDGRVNSSD-VTILSRYL 79
>pdb|3NXA|A Chain A, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|B Chain B, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|C Chain C, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|D Chain D, X-Ray Structure Of The Apo Form Of Human S100a16
Length = 100
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 132 KISAEEILEMLRR-----LGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178
KIS EML++ L ++ + + K+++ +D + DG ++ DE+ T++
Sbjct: 30 KISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLI 81
>pdb|3RLZ|A Chain A, 2.0 Angstrom X-Ray Structure Of Bovine Ca(2+)-S100b D63n
pdb|3RLZ|B Chain B, 2.0 Angstrom X-Ray Structure Of Bovine Ca(2+)-S100b D63n
pdb|3RM1|A Chain A, 1.24 Angstrom X-Ray Structure Of Bovine
Trtk12-Ca(2+)-S100b D63n
Length = 92
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D +GDG DF+EFM
Sbjct: 54 VDKVMETLDSNGDGECDFQEFM 75
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKE 102
D+++ +F + DGK+S + K + +G S + +I+++ D+D DG +D +E
Sbjct: 456 DKSKYDEIFYNL-APADGKLSGSKAKTWM--VGTKLPNSVLGRIWKLSDVDRDGMLDDEE 512
Query: 103 F------MEAHKKGGGIRT 115
F +EA +G G+ T
Sbjct: 513 FALASHLIEAKLEGHGLPT 531
>pdb|1QJT|A Chain A, Solution Structure Of The Apo Eh1 Domain Of Mouse
Epidermal Growth Factor Receptor Substrate 15, Eps15
Length = 99
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106
++ + + ++ G++ ++ A L+ G +I + KI+ + D DG G + +EF A
Sbjct: 14 EKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLI--LGKIWDLADTDGKGVLSKQEFFVA 70
>pdb|4ICB|A Chain A, Proline Cis-Trans Isomers In Calbindin D9k Observed By
X- Ray Crystallography
Length = 76
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ 76
P+ + + +F+ D N DG++S E++ +++ I Q
Sbjct: 37 FPSLLKGPSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 76
>pdb|1IG5|A Chain A, Bovine Calbindin D9k Binding Mg2+
pdb|1IGV|A Chain A, Bovine Calbindin D9k Binding Mn2+
pdb|3ICB|A Chain A, The Refined Structure Of Vitamin D-Dependent Calcium-
Binding Protein From Bovine Intestine. Molecular
Details, Ion Binding, And Implications For The
Structure Of Other Calcium-Binding Proteins
Length = 75
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ 76
P+ + + +F+ D N DG++S E++ +++ I Q
Sbjct: 36 FPSLLKGPSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 75
>pdb|1HT9|A Chain A, Domain Swapping Ef-Hands
pdb|1HT9|B Chain B, Domain Swapping Ef-Hands
Length = 76
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ 76
P+ + + +F+ D N DG++S E++ +++ I Q
Sbjct: 37 FPSLLKGMSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 76
>pdb|1CDN|A Chain A, Solution Structure Of (Cd2+)1-Calbindin D9k Reveals
Details Of The Stepwise Structural Changes Along The
Apo--> (Ca2+) Ii1--> (Ca2+)i,Ii2 Binding Pathway
pdb|1CLB|A Chain A, Determination Of The Solution Structure Of Apo Calbindin
D9k By Nmr Spectroscopy
pdb|2BCA|A Chain A, High-Resolution Solution Structure Of Calcium-Loaded
Calbindin D9k
Length = 76
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ 76
P+ + + +F+ D N DG++S E++ +++ I Q
Sbjct: 37 FPSLLKGGSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 76
>pdb|2BE4|A Chain A, X-ray Structure An Ef-hand Protein From Danio Rerio
Dr.36843
pdb|2Q4U|A Chain A, Ensemble Refinement Of The Crystal Structure Of An Ef-Hand
Protein From Danio Rerio Dr.36843
Length = 272
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 82 EVPKIFQVVDLDGDGFI---DFKEFME----AHKKGGGIRTMD--IQSAFRTFDKNDDGK 132
E KI++ D D G+I + K F++ HKK +D + + FDKN DG+
Sbjct: 105 EFXKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAXXKIFDKNKDGR 164
Query: 133 ISAEEILEML 142
+ ++ +L
Sbjct: 165 LDLNDLARIL 174
>pdb|1N65|A Chain A, Family Of Nmr Solution Structures Of Ca Ce Calbindin D9k
In Denaturating Conditions
Length = 75
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ 76
P+ + + +F+ D N DG++S E++ +++ I Q
Sbjct: 36 FPSLLKGMSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 75
>pdb|2JPT|A Chain A, Structural Changes Induced In Apo-s100a1 Protein By The
Disulphide Formation Between Its Cys85 Residue And B-
Mercaptoethanol
pdb|2JPT|B Chain B, Structural Changes Induced In Apo-s100a1 Protein By The
Disulphide Formation Between Its Cys85 Residue And B-
Mercaptoethanol
Length = 93
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 83 VPKIFQVVDLDGDGFIDFKEFM 104
V K+ + +D DGDG +DF+E++
Sbjct: 54 VDKVMKELDEDGDGEVDFQEYV 75
>pdb|2BCB|A Chain A, High-Resolution Solution Structure Of Calcium-Loaded
Calbindin D9k
pdb|1B1G|A Chain A, Solvated Refinement Of Ca-Loaded Calbindin D9k
Length = 75
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ 76
P+ + + +F+ D N DG++S E++ +++ I Q
Sbjct: 36 FPSLLKGGSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 75
>pdb|1KSM|A Chain A, Average Nmr Solution Structure Of Ca Ln Calbindin D9k
pdb|1KQV|A Chain A, Family Of Nmr Solution Structures Of Ca Ln Calbindin D9k
Length = 79
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ 76
P+ + + +F+ D N DG++S E++ +++ I Q
Sbjct: 40 FPSLLKGMSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 79
>pdb|1KCY|A Chain A, Nmr Solution Structure Of Apo Calbindin D9k (F36g + P43m
Mutant)
Length = 75
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ 76
P+ + + +F+ D N DG++S E++ +++ I Q
Sbjct: 37 PSLLKGMSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 75
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 14 SKNKFLRKPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKD 59
SKN R P L + +R +L TF+ D N + ++ DS D
Sbjct: 546 SKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMD 591
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
Length = 498
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 10 QYKISKNKFLRKPSRLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYK- 68
+Y ++ FL K + ++ R NS ++ T++ D +KR + D K++ E K
Sbjct: 294 RYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKE 353
Query: 69 --AILRAIGQASMISEVP 84
A+ ++ A+ ++ P
Sbjct: 354 QEAVSKSTSPAANSADTP 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,990,500
Number of Sequences: 62578
Number of extensions: 193666
Number of successful extensions: 2129
Number of sequences better than 100.0: 386
Number of HSP's better than 100.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 907
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)