Query 041237
Match_columns 185
No_of_seqs 111 out of 1254
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 1.7E-25 3.7E-30 153.1 16.7 147 35-182 10-158 (160)
2 KOG0027 Calmodulin and related 99.9 3.5E-24 7.5E-29 148.7 16.4 141 40-180 3-149 (151)
3 PTZ00183 centrin; Provisional 99.9 1.5E-21 3.1E-26 136.4 18.4 144 39-182 11-156 (158)
4 PTZ00184 calmodulin; Provision 99.9 2.1E-21 4.6E-26 134.2 17.1 142 39-180 5-148 (149)
5 KOG0028 Ca2+-binding protein ( 99.9 2.2E-20 4.8E-25 125.5 15.2 144 38-181 26-171 (172)
6 KOG0037 Ca2+-binding protein, 99.8 1.6E-19 3.5E-24 127.6 15.1 136 43-183 55-191 (221)
7 KOG0030 Myosin essential light 99.8 1.1E-18 2.4E-23 114.7 13.3 140 39-179 5-150 (152)
8 KOG0031 Myosin regulatory ligh 99.8 7.3E-18 1.6E-22 112.7 15.6 138 39-180 26-165 (171)
9 KOG0034 Ca2+/calmodulin-depend 99.8 1.9E-17 4.2E-22 117.2 15.3 139 39-181 27-176 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 1.6E-17 3.4E-22 117.8 13.8 147 36-182 17-177 (193)
11 KOG0036 Predicted mitochondria 99.7 2E-16 4.2E-21 121.2 15.5 138 38-179 7-145 (463)
12 KOG0037 Ca2+-binding protein, 99.6 5.3E-14 1.2E-18 99.8 15.2 129 38-178 87-218 (221)
13 KOG0027 Calmodulin and related 99.5 6.4E-13 1.4E-17 92.2 11.8 103 80-182 7-115 (151)
14 COG5126 FRQ1 Ca2+-binding prot 99.5 2.3E-12 4.9E-17 88.7 12.5 120 24-144 24-156 (160)
15 KOG4223 Reticulocalbin, calume 99.5 5E-13 1.1E-17 100.0 10.0 142 41-182 73-230 (325)
16 KOG0377 Protein serine/threoni 99.5 1.1E-12 2.5E-17 101.7 11.3 138 41-180 460-615 (631)
17 PLN02964 phosphatidylserine de 99.5 2.9E-12 6.3E-17 105.9 14.3 103 38-144 136-243 (644)
18 PTZ00183 centrin; Provisional 99.4 9.5E-12 2.1E-16 86.7 13.5 102 43-144 51-154 (158)
19 KOG4223 Reticulocalbin, calume 99.4 2.3E-12 4.9E-17 96.5 9.1 134 43-176 161-301 (325)
20 PF13499 EF-hand_7: EF-hand do 99.4 4.1E-12 9E-17 75.7 7.1 62 117-178 1-66 (66)
21 cd05022 S-100A13 S-100A13: S-1 99.4 5E-12 1.1E-16 79.3 7.6 68 115-182 7-77 (89)
22 PTZ00184 calmodulin; Provision 99.3 3.8E-11 8.2E-16 82.7 12.4 99 82-180 12-112 (149)
23 KOG0044 Ca2+ sensor (EF-Hand s 99.3 1.9E-11 4E-16 87.0 9.8 104 42-145 61-176 (193)
24 PF13499 EF-hand_7: EF-hand do 99.3 1.3E-11 2.8E-16 73.5 7.6 62 46-107 1-66 (66)
25 KOG0028 Ca2+-binding protein ( 99.3 1.1E-10 2.3E-15 79.2 11.2 101 81-181 33-135 (172)
26 cd05022 S-100A13 S-100A13: S-1 99.3 3.3E-11 7.3E-16 75.6 8.1 70 40-109 3-75 (89)
27 KOG0038 Ca2+-binding kinase in 99.3 3.3E-11 7.2E-16 80.3 8.3 118 61-182 55-179 (189)
28 cd05027 S-100B S-100B: S-100B 99.3 5.8E-11 1.3E-15 74.6 8.4 67 115-181 7-80 (88)
29 KOG2643 Ca2+ binding protein, 99.2 2.5E-11 5.4E-16 94.2 6.4 142 43-185 231-458 (489)
30 cd05027 S-100B S-100B: S-100B 99.2 1.9E-10 4.1E-15 72.2 8.6 69 41-109 4-79 (88)
31 cd05029 S-100A6 S-100A6: S-100 99.1 5.2E-10 1.1E-14 70.2 8.3 67 116-182 10-81 (88)
32 PLN02964 phosphatidylserine de 99.1 1.1E-09 2.3E-14 90.9 12.2 98 80-181 142-244 (644)
33 PF13833 EF-hand_8: EF-hand do 99.1 2.9E-10 6.3E-15 64.9 6.3 52 129-180 1-53 (54)
34 cd05026 S-100Z S-100Z: S-100Z 99.1 6.6E-10 1.4E-14 70.6 8.3 68 115-182 9-83 (93)
35 cd05025 S-100A1 S-100A1: S-100 99.1 7.5E-10 1.6E-14 70.3 8.6 68 115-182 8-82 (92)
36 cd05031 S-100A10_like S-100A10 99.1 6.1E-10 1.3E-14 71.0 8.1 67 115-181 7-80 (94)
37 KOG0040 Ca2+-binding actin-bun 99.1 1.1E-09 2.3E-14 95.6 11.5 139 33-179 2241-2397(2399)
38 cd05029 S-100A6 S-100A6: S-100 99.1 1E-09 2.3E-14 68.9 8.4 71 39-109 4-79 (88)
39 KOG0034 Ca2+/calmodulin-depend 99.1 1.4E-09 3.1E-14 77.3 9.9 100 46-145 67-176 (187)
40 cd05026 S-100Z S-100Z: S-100Z 99.1 1.4E-09 3E-14 69.1 8.7 70 40-109 5-81 (93)
41 cd00052 EH Eps15 homology doma 99.1 1.4E-09 3.1E-14 64.6 7.6 60 119-180 2-61 (67)
42 cd05031 S-100A10_like S-100A10 99.0 2.1E-09 4.5E-14 68.5 8.3 69 41-109 4-79 (94)
43 cd05025 S-100A1 S-100A1: S-100 99.0 2.4E-09 5.2E-14 68.0 8.4 70 40-109 4-80 (92)
44 smart00027 EH Eps15 homology d 99.0 2.8E-09 6.1E-14 68.2 8.6 68 40-109 5-72 (96)
45 cd00213 S-100 S-100: S-100 dom 99.0 2.5E-09 5.3E-14 67.3 8.0 68 115-182 7-81 (88)
46 smart00027 EH Eps15 homology d 99.0 2.9E-09 6.4E-14 68.1 8.2 65 115-181 9-73 (96)
47 cd00051 EFh EF-hand, calcium b 99.0 4.1E-09 9E-14 61.1 7.8 61 118-178 2-62 (63)
48 KOG2562 Protein phosphatase 2 99.0 6.1E-09 1.3E-13 81.7 10.6 131 43-176 273-420 (493)
49 cd00052 EH Eps15 homology doma 99.0 3.1E-09 6.8E-14 63.1 7.0 60 48-109 2-61 (67)
50 cd00213 S-100 S-100: S-100 dom 99.0 4.5E-09 9.7E-14 66.2 8.0 69 41-109 4-79 (88)
51 cd05023 S-100A11 S-100A11: S-1 98.9 7.8E-09 1.7E-13 65.0 8.2 68 115-182 8-82 (89)
52 KOG4251 Calcium binding protei 98.9 2.7E-09 5.8E-14 77.4 6.8 137 43-179 99-308 (362)
53 PF13833 EF-hand_8: EF-hand do 98.9 4.6E-09 1E-13 59.8 6.3 51 58-108 1-52 (54)
54 cd00051 EFh EF-hand, calcium b 98.9 9.4E-09 2E-13 59.5 7.6 61 47-107 2-62 (63)
55 cd00252 SPARC_EC SPARC_EC; ext 98.9 1.1E-08 2.4E-13 67.3 8.1 62 115-180 47-108 (116)
56 cd05023 S-100A11 S-100A11: S-1 98.9 1.8E-08 3.8E-13 63.4 8.5 70 40-109 4-80 (89)
57 KOG2643 Ca2+ binding protein, 98.8 2.6E-08 5.6E-13 77.7 9.6 120 55-181 209-347 (489)
58 PF14658 EF-hand_9: EF-hand do 98.8 2.3E-08 4.9E-13 58.4 6.5 61 120-180 2-64 (66)
59 KOG0036 Predicted mitochondria 98.8 1.5E-07 3.2E-12 73.1 12.2 126 42-177 48-180 (463)
60 cd05030 calgranulins Calgranul 98.8 3.8E-08 8.2E-13 61.9 7.4 67 116-182 8-81 (88)
61 cd00252 SPARC_EC SPARC_EC; ext 98.8 5E-08 1.1E-12 64.2 8.0 63 41-107 44-106 (116)
62 PF14658 EF-hand_9: EF-hand do 98.8 3.7E-08 8E-13 57.5 6.4 61 49-109 2-64 (66)
63 cd05030 calgranulins Calgranul 98.8 5.6E-08 1.2E-12 61.1 7.6 70 40-109 3-79 (88)
64 KOG0031 Myosin regulatory ligh 98.5 5.7E-06 1.2E-10 56.1 12.1 115 24-143 36-164 (171)
65 KOG0751 Mitochondrial aspartat 98.5 8.8E-07 1.9E-11 70.4 9.3 134 39-174 68-238 (694)
66 KOG0169 Phosphoinositide-speci 98.4 7.1E-06 1.5E-10 68.5 13.2 138 42-182 133-276 (746)
67 KOG0041 Predicted Ca2+-binding 98.4 2.6E-06 5.7E-11 60.2 9.2 109 37-145 91-204 (244)
68 KOG0038 Ca2+-binding kinase in 98.4 2.4E-06 5.2E-11 57.4 8.5 97 49-145 75-178 (189)
69 cd05024 S-100A10 S-100A10: A s 98.4 3.7E-06 8.1E-11 52.6 8.7 65 116-181 8-77 (91)
70 PF00036 EF-hand_1: EF hand; 98.4 3.6E-07 7.8E-12 44.8 3.2 20 157-176 5-24 (29)
71 KOG2562 Protein phosphatase 2 98.4 2.2E-06 4.7E-11 67.7 9.0 131 44-176 224-375 (493)
72 PF00036 EF-hand_1: EF hand; 98.4 6E-07 1.3E-11 44.0 3.8 29 117-145 1-29 (29)
73 KOG4251 Calcium binding protei 98.4 1.6E-06 3.6E-11 63.2 7.4 94 83-176 238-341 (362)
74 cd05024 S-100A10 S-100A10: A s 98.4 6.8E-06 1.5E-10 51.4 8.7 68 41-109 4-76 (91)
75 PF12763 EF-hand_4: Cytoskelet 98.3 2.5E-06 5.4E-11 55.1 6.8 68 39-109 4-71 (104)
76 KOG0041 Predicted Ca2+-binding 98.3 4.5E-06 9.7E-11 59.1 8.3 68 115-182 98-165 (244)
77 KOG0030 Myosin essential light 98.3 2E-05 4.3E-10 52.6 10.3 102 80-181 10-117 (152)
78 KOG0751 Mitochondrial aspartat 98.3 3.5E-06 7.7E-11 67.1 7.9 133 45-180 108-278 (694)
79 KOG0377 Protein serine/threoni 98.3 1.6E-06 3.6E-11 68.1 5.8 65 44-108 546-614 (631)
80 PF13405 EF-hand_6: EF-hand do 98.2 1.9E-06 4.1E-11 43.0 3.2 29 118-146 2-31 (31)
81 PF14788 EF-hand_10: EF hand; 98.2 8.6E-06 1.9E-10 44.9 5.5 49 133-181 2-50 (51)
82 PF13405 EF-hand_6: EF-hand do 98.1 6.3E-06 1.4E-10 41.1 3.8 27 46-72 1-27 (31)
83 PRK12309 transaldolase/EF-hand 98.1 1.1E-05 2.4E-10 64.0 7.1 58 114-184 332-389 (391)
84 PF14788 EF-hand_10: EF hand; 98.1 1.7E-05 3.6E-10 43.8 5.4 47 62-108 2-48 (51)
85 KOG4666 Predicted phosphate ac 98.0 1.7E-05 3.7E-10 60.2 6.5 100 81-182 259-361 (412)
86 PRK12309 transaldolase/EF-hand 98.0 4.1E-05 8.9E-10 60.8 8.6 58 75-144 328-385 (391)
87 PF13202 EF-hand_5: EF hand; P 97.9 1.4E-05 3.1E-10 37.6 2.6 19 121-139 4-22 (25)
88 KOG0040 Ca2+-binding actin-bun 97.9 0.00016 3.4E-09 64.7 10.6 94 82-176 2254-2357(2399)
89 PF12763 EF-hand_4: Cytoskelet 97.8 0.00016 3.4E-09 46.7 7.2 62 115-179 9-70 (104)
90 PF13202 EF-hand_5: EF hand; P 97.8 3.9E-05 8.4E-10 36.2 3.3 22 48-69 2-23 (25)
91 PF09279 EF-hand_like: Phospho 97.8 7.1E-05 1.5E-09 46.3 5.4 66 117-183 1-72 (83)
92 PF10591 SPARC_Ca_bdg: Secrete 97.7 3.7E-05 8.1E-10 50.5 2.9 61 43-105 52-112 (113)
93 KOG1029 Endocytic adaptor prot 97.6 0.00088 1.9E-08 56.5 10.5 59 118-178 197-255 (1118)
94 KOG4666 Predicted phosphate ac 97.6 0.00022 4.7E-09 54.3 5.8 102 45-146 259-361 (412)
95 PF10591 SPARC_Ca_bdg: Secrete 97.3 9.5E-05 2.1E-09 48.6 1.5 62 113-176 51-112 (113)
96 KOG0046 Ca2+-binding actin-bun 97.2 0.0015 3.3E-08 52.9 7.4 71 38-109 12-85 (627)
97 KOG1707 Predicted Ras related/ 97.1 0.0031 6.7E-08 51.9 7.9 139 38-179 188-376 (625)
98 KOG0046 Ca2+-binding actin-bun 96.9 0.0047 1E-07 50.2 7.1 63 117-180 20-85 (627)
99 KOG1265 Phospholipase C [Lipid 96.9 0.059 1.3E-06 46.7 13.7 124 55-183 158-302 (1189)
100 smart00054 EFh EF-hand, calciu 96.8 0.002 4.3E-08 30.3 3.0 18 122-139 6-23 (29)
101 smart00054 EFh EF-hand, calciu 96.8 0.0021 4.6E-08 30.1 3.1 24 48-71 3-26 (29)
102 PF09279 EF-hand_like: Phospho 96.7 0.0041 8.9E-08 38.3 4.8 62 83-145 2-70 (83)
103 KOG0035 Ca2+-binding actin-bun 96.7 0.022 4.7E-07 49.5 10.3 107 33-140 735-848 (890)
104 KOG4065 Uncharacterized conser 96.7 0.0087 1.9E-07 38.9 6.0 64 114-177 64-142 (144)
105 PLN02952 phosphoinositide phos 96.6 0.03 6.5E-07 47.1 10.3 85 95-180 14-110 (599)
106 PF05042 Caleosin: Caleosin re 96.5 0.056 1.2E-06 37.9 9.5 131 46-177 8-163 (174)
107 KOG0169 Phosphoinositide-speci 96.3 0.041 8.9E-07 46.8 9.3 95 83-181 138-233 (746)
108 KOG4065 Uncharacterized conser 95.8 0.045 9.9E-07 35.6 5.8 57 49-105 71-141 (144)
109 KOG3555 Ca2+-binding proteogly 95.7 0.038 8.1E-07 42.8 5.9 102 44-148 210-314 (434)
110 PF09069 EF-hand_3: EF-hand; 95.5 0.22 4.8E-06 31.2 7.9 61 116-181 3-76 (90)
111 KOG1029 Endocytic adaptor prot 95.4 0.03 6.5E-07 47.7 4.8 66 41-108 191-256 (1118)
112 PF05517 p25-alpha: p25-alpha 95.1 0.15 3.3E-06 35.4 7.0 53 128-180 14-69 (154)
113 KOG4347 GTPase-activating prot 95.0 0.13 2.8E-06 43.2 7.5 76 62-138 535-612 (671)
114 KOG1955 Ral-GTPase effector RA 95.0 0.077 1.7E-06 43.2 5.8 60 118-179 233-292 (737)
115 KOG1955 Ral-GTPase effector RA 94.8 0.096 2.1E-06 42.6 5.9 70 38-109 224-293 (737)
116 KOG3555 Ca2+-binding proteogly 94.5 0.11 2.4E-06 40.3 5.4 67 41-111 246-312 (434)
117 KOG0042 Glycerol-3-phosphate d 94.4 0.092 2E-06 43.5 5.2 63 118-180 595-657 (680)
118 PLN02952 phosphoinositide phos 94.4 0.62 1.3E-05 39.5 10.0 86 58-144 13-110 (599)
119 KOG0042 Glycerol-3-phosphate d 93.7 0.22 4.8E-06 41.4 6.0 76 34-109 582-657 (680)
120 PF05042 Caleosin: Caleosin re 93.6 1.4 3.1E-05 31.0 9.1 34 149-182 93-126 (174)
121 KOG4578 Uncharacterized conser 93.2 0.078 1.7E-06 40.9 2.7 61 120-180 337-398 (421)
122 KOG3866 DNA-binding protein of 92.7 0.41 8.9E-06 36.8 5.8 47 63-109 225-272 (442)
123 PLN02222 phosphoinositide phos 92.5 0.48 1E-05 39.9 6.5 65 114-180 23-90 (581)
124 KOG4347 GTPase-activating prot 92.0 0.3 6.4E-06 41.1 4.7 75 98-173 535-611 (671)
125 KOG2243 Ca2+ release channel ( 92.0 0.34 7.4E-06 44.5 5.2 60 120-180 4061-4120(5019)
126 PLN02228 Phosphoinositide phos 91.8 1.2 2.5E-05 37.6 7.9 65 114-180 22-92 (567)
127 PF05517 p25-alpha: p25-alpha 91.5 1.5 3.2E-05 30.5 7.1 62 48-109 2-69 (154)
128 KOG4578 Uncharacterized conser 91.0 0.18 3.9E-06 38.9 2.3 63 82-145 334-399 (421)
129 KOG0998 Synaptic vesicle prote 90.9 0.26 5.7E-06 43.5 3.5 139 36-179 120-344 (847)
130 KOG1265 Phospholipase C [Lipid 90.2 5.4 0.00012 35.4 10.5 77 65-144 208-299 (1189)
131 PLN02230 phosphoinositide phos 90.2 1.9 4.1E-05 36.6 7.7 67 113-180 26-102 (598)
132 KOG4286 Dystrophin-like protei 89.5 6.1 0.00013 34.3 10.1 134 43-180 418-580 (966)
133 KOG2243 Ca2+ release channel ( 88.4 0.95 2.1E-05 41.9 4.9 57 51-108 4063-4119(5019)
134 PF11116 DUF2624: Protein of u 87.8 4.7 0.0001 24.9 6.6 31 131-161 13-43 (85)
135 KOG3866 DNA-binding protein of 85.3 2.3 5.1E-05 32.8 5.0 90 50-145 249-355 (442)
136 PF14513 DAG_kinase_N: Diacylg 84.9 2.8 6E-05 28.5 4.8 66 96-162 6-79 (138)
137 KOG0035 Ca2+-binding actin-bun 84.7 3.6 7.8E-05 36.4 6.4 66 116-181 747-817 (890)
138 PF08726 EFhand_Ca_insen: Ca2+ 83.3 1.3 2.8E-05 26.2 2.4 57 113-177 3-66 (69)
139 KOG0998 Synaptic vesicle prote 82.4 2 4.4E-05 38.1 4.2 132 43-179 9-189 (847)
140 PF08414 NADPH_Ox: Respiratory 80.3 4.5 9.8E-05 25.7 4.1 61 43-108 28-91 (100)
141 PLN02228 Phosphoinositide phos 79.6 13 0.00027 31.6 7.7 30 43-74 22-51 (567)
142 KOG1264 Phospholipase C [Lipid 79.1 9.8 0.00021 33.7 6.9 136 47-183 146-296 (1267)
143 PLN02223 phosphoinositide phos 78.7 13 0.00029 31.3 7.4 68 113-181 13-93 (537)
144 PLN02222 phosphoinositide phos 77.6 13 0.00027 31.8 7.1 66 42-109 22-90 (581)
145 KOG4403 Cell surface glycoprot 76.9 21 0.00046 29.1 7.8 98 58-160 41-146 (575)
146 KOG2871 Uncharacterized conser 75.9 1.8 4E-05 34.2 1.7 63 114-176 307-370 (449)
147 PF08976 DUF1880: Domain of un 75.7 2.5 5.5E-05 27.7 2.1 31 149-179 4-34 (118)
148 PF09069 EF-hand_3: EF-hand; 75.5 17 0.00037 22.8 7.5 62 45-109 3-75 (90)
149 PLN02230 phosphoinositide phos 75.4 17 0.00038 31.0 7.4 31 43-74 27-57 (598)
150 PF01023 S_100: S-100/ICaBP ty 75.1 10 0.00022 20.2 4.1 32 42-73 3-36 (44)
151 KOG1707 Predicted Ras related/ 73.2 7.9 0.00017 32.8 4.8 92 35-129 305-399 (625)
152 PF02761 Cbl_N2: CBL proto-onc 72.5 20 0.00044 22.2 6.6 66 45-111 7-72 (85)
153 KOG4004 Matricellular protein 71.7 1.3 2.8E-05 31.9 0.1 46 95-141 202-247 (259)
154 PF09068 EF-hand_2: EF hand; 70.5 25 0.00053 23.6 6.0 32 43-74 39-72 (127)
155 PF07308 DUF1456: Protein of u 70.3 20 0.00043 21.2 5.2 46 133-178 14-59 (68)
156 PF08726 EFhand_Ca_insen: Ca2+ 70.0 4.8 0.0001 23.8 2.2 28 43-71 4-31 (69)
157 KOG0039 Ferric reductase, NADH 69.9 15 0.00032 31.9 5.9 67 78-145 15-90 (646)
158 cd07313 terB_like_2 tellurium 69.7 25 0.00054 22.1 6.2 81 59-141 13-97 (104)
159 KOG2871 Uncharacterized conser 66.9 5.4 0.00012 31.7 2.5 64 43-106 307-371 (449)
160 PF00404 Dockerin_1: Dockerin 66.5 8.2 0.00018 17.1 2.1 13 127-139 2-14 (21)
161 PF12174 RST: RCD1-SRO-TAF4 (R 66.5 8.1 0.00018 23.0 2.7 61 95-160 6-66 (70)
162 PF12174 RST: RCD1-SRO-TAF4 (R 66.3 8.1 0.00018 23.0 2.7 47 60-109 7-53 (70)
163 PF08461 HTH_12: Ribonuclease 65.6 15 0.00032 21.4 3.7 37 129-165 10-46 (66)
164 TIGR01848 PHA_reg_PhaR polyhyd 64.4 26 0.00057 22.6 4.8 70 88-166 10-83 (107)
165 KOG3077 Uncharacterized conser 63.6 53 0.0011 25.0 7.0 20 128-147 113-132 (260)
166 KOG4403 Cell surface glycoprot 60.8 17 0.00036 29.6 4.2 85 93-181 40-130 (575)
167 PF11116 DUF2624: Protein of u 60.7 38 0.00082 21.0 5.9 47 61-107 14-60 (85)
168 PF08976 DUF1880: Domain of un 59.9 9.3 0.0002 25.1 2.3 31 78-108 4-34 (118)
169 KOG3449 60S acidic ribosomal p 58.1 49 0.0011 21.5 6.2 42 120-161 5-46 (112)
170 PF07879 PHB_acc_N: PHB/PHA ac 57.6 21 0.00046 20.7 3.2 19 90-108 12-30 (64)
171 KOG4301 Beta-dystrobrevin [Cyt 57.1 53 0.0012 26.0 6.2 91 85-181 114-216 (434)
172 PLN02223 phosphoinositide phos 53.9 83 0.0018 26.7 7.3 67 42-109 13-92 (537)
173 PTZ00373 60S Acidic ribosomal 52.8 57 0.0012 21.4 5.1 51 121-176 8-58 (112)
174 PF14513 DAG_kinase_N: Diacylg 51.1 40 0.00086 23.0 4.3 33 60-92 47-80 (138)
175 PF08414 NADPH_Ox: Respiratory 50.4 65 0.0014 20.6 5.8 62 80-145 29-93 (100)
176 TIGR03573 WbuX N-acetyl sugar 50.1 53 0.0011 26.0 5.6 43 130-178 300-342 (343)
177 cd07313 terB_like_2 tellurium 49.6 40 0.00087 21.2 4.1 77 95-173 13-93 (104)
178 PF12419 DUF3670: SNF2 Helicas 49.0 45 0.00097 22.7 4.4 50 129-178 80-139 (141)
179 TIGR01639 P_fal_TIGR01639 Plas 46.5 56 0.0012 18.7 4.1 32 131-162 8-39 (61)
180 cd05833 Ribosomal_P2 Ribosomal 45.8 83 0.0018 20.5 5.1 55 121-180 6-60 (109)
181 KOG1785 Tyrosine kinase negati 44.9 1.7E+02 0.0037 23.9 7.8 97 45-144 175-274 (563)
182 PF09412 XendoU: Endoribonucle 44.8 60 0.0013 24.8 4.9 121 42-173 61-183 (265)
183 PF07308 DUF1456: Protein of u 43.2 69 0.0015 18.8 4.9 42 65-106 17-58 (68)
184 PF02761 Cbl_N2: CBL proto-onc 42.5 82 0.0018 19.5 4.7 50 96-145 21-71 (85)
185 KOG0039 Ferric reductase, NADH 42.5 67 0.0015 28.0 5.4 65 44-109 17-89 (646)
186 PRK00523 hypothetical protein; 42.5 75 0.0016 19.0 5.0 42 119-161 27-68 (72)
187 PF03979 Sigma70_r1_1: Sigma-7 41.7 35 0.00076 20.7 2.7 32 129-162 18-49 (82)
188 KOG1954 Endocytosis/signaling 41.0 62 0.0013 26.3 4.5 57 45-104 444-500 (532)
189 PF03672 UPF0154: Uncharacteri 40.5 76 0.0016 18.5 4.9 32 130-161 29-60 (64)
190 KOG3449 60S acidic ribosomal p 40.3 1E+02 0.0023 20.1 6.5 54 47-105 3-56 (112)
191 KOG4070 Putative signal transd 39.6 43 0.00093 23.2 3.0 69 78-146 9-87 (180)
192 PF09336 Vps4_C: Vps4 C termin 38.2 54 0.0012 18.8 3.0 26 132-157 29-54 (62)
193 PLN00138 large subunit ribosom 36.5 1.2E+02 0.0027 19.8 5.0 50 121-175 6-55 (113)
194 PF04558 tRNA_synt_1c_R1: Glut 35.4 80 0.0017 22.2 4.0 57 104-161 73-129 (164)
195 KOG3077 Uncharacterized conser 34.8 2.1E+02 0.0045 21.9 12.4 73 42-114 61-134 (260)
196 KOG2301 Voltage-gated Ca2+ cha 33.8 1.6E+02 0.0034 28.9 6.6 71 38-109 1410-1484(1592)
197 cd08315 Death_TRAILR_DR4_DR5 D 32.9 1.3E+02 0.0028 19.0 9.5 88 44-158 3-90 (96)
198 PF01885 PTS_2-RNA: RNA 2'-pho 32.6 80 0.0017 22.7 3.8 35 127-161 27-61 (186)
199 TIGR01848 PHA_reg_PhaR polyhyd 32.3 1.4E+02 0.0031 19.3 7.0 21 53-73 11-31 (107)
200 KOG0869 CCAAT-binding factor, 32.1 1.4E+02 0.0031 20.8 4.6 51 101-161 65-115 (168)
201 KOG4301 Beta-dystrobrevin [Cyt 31.7 1.1E+02 0.0023 24.5 4.4 61 119-181 113-174 (434)
202 PF05099 TerB: Tellurite resis 31.4 1.2E+02 0.0026 20.1 4.4 91 44-137 23-117 (140)
203 PF10437 Lip_prot_lig_C: Bacte 31.4 1.2E+02 0.0026 18.3 4.0 42 135-178 44-86 (86)
204 KOG0506 Glutaminase (contains 31.0 1.7E+02 0.0036 24.6 5.6 63 119-181 89-159 (622)
205 cd07176 terB tellurite resista 29.9 1.4E+02 0.0031 18.6 4.7 16 59-74 16-31 (111)
206 KOG4286 Dystrophin-like protei 29.7 2.5E+02 0.0054 25.2 6.6 93 48-143 473-579 (966)
207 PRK09462 fur ferric uptake reg 28.5 1.9E+02 0.0042 19.6 7.2 21 132-152 33-53 (148)
208 PRK09430 djlA Dna-J like membr 28.3 2.7E+02 0.0059 21.2 10.5 100 58-160 68-174 (267)
209 TIGR02675 tape_meas_nterm tape 28.1 1.1E+02 0.0024 18.2 3.3 14 130-143 28-41 (75)
210 KOG4629 Predicted mechanosensi 27.4 1.6E+02 0.0035 26.1 5.2 55 83-143 406-460 (714)
211 PRK00819 RNA 2'-phosphotransfe 27.2 1.4E+02 0.003 21.3 4.2 32 93-124 29-61 (179)
212 PRK01844 hypothetical protein; 26.7 1.5E+02 0.0033 17.7 4.8 42 119-161 26-67 (72)
213 COG2818 Tag 3-methyladenine DN 26.5 1.1E+02 0.0024 22.1 3.5 34 115-148 54-87 (188)
214 KOG1954 Endocytosis/signaling 26.2 1.2E+02 0.0025 24.8 3.9 55 118-175 446-500 (532)
215 PF02337 Gag_p10: Retroviral G 26.0 1.8E+02 0.0038 18.3 4.4 8 164-171 69-76 (90)
216 KOG4629 Predicted mechanosensi 25.7 1.7E+02 0.0036 26.0 5.0 59 115-180 403-461 (714)
217 PF15144 DUF4576: Domain of un 25.5 36 0.00077 20.6 0.8 33 59-91 38-70 (88)
218 COG3763 Uncharacterized protei 25.2 1.6E+02 0.0034 17.5 5.3 41 120-161 27-67 (71)
219 PRK14981 DNA-directed RNA poly 24.0 1.9E+02 0.0041 18.8 4.1 13 61-73 11-23 (112)
220 PF09068 EF-hand_2: EF hand; 23.5 2.3E+02 0.0051 18.9 8.7 26 154-179 99-124 (127)
221 TIGR03798 ocin_TIGR03798 bacte 23.5 1.6E+02 0.0034 16.8 6.0 25 133-157 25-49 (64)
222 COG4103 Uncharacterized protei 23.4 2.6E+02 0.0056 19.3 7.1 92 49-144 34-129 (148)
223 PF09373 PMBR: Pseudomurein-bi 23.1 93 0.002 15.2 1.9 15 166-180 2-16 (33)
224 KOG0713 Molecular chaperone (D 23.0 1.5E+02 0.0033 23.4 4.0 49 77-125 27-81 (336)
225 PF01885 PTS_2-RNA: RNA 2'-pho 23.0 1.6E+02 0.0034 21.1 3.9 37 56-92 27-63 (186)
226 cd04411 Ribosomal_P1_P2_L12p R 22.7 2.2E+02 0.0048 18.3 5.3 42 133-179 17-58 (105)
227 KOG0871 Class 2 transcription 22.4 2.7E+02 0.0058 19.3 4.5 39 121-159 55-93 (156)
228 COG5562 Phage envelope protein 22.4 85 0.0018 21.3 2.2 29 82-110 73-101 (137)
229 PF07862 Nif11: Nitrogen fixat 21.9 1.4E+02 0.0031 15.8 5.6 21 134-154 28-48 (49)
230 PF14178 YppF: YppF-like prote 21.9 94 0.002 17.8 2.0 19 167-185 35-53 (60)
231 PF08671 SinI: Anti-repressor 21.9 96 0.0021 15.0 1.8 11 133-143 17-27 (30)
232 PRK09430 djlA Dna-J like membr 21.7 3.3E+02 0.0072 20.8 5.6 75 95-173 69-150 (267)
233 PF12207 DUF3600: Domain of un 21.7 2.5E+02 0.0054 19.5 4.3 80 59-145 37-118 (162)
234 cd07177 terB_like tellurium re 21.3 2.1E+02 0.0045 17.4 5.9 81 59-141 13-97 (104)
235 PF07128 DUF1380: Protein of u 21.0 1.9E+02 0.004 19.8 3.6 30 133-162 27-56 (139)
236 smart00513 SAP Putative DNA-bi 20.2 1.3E+02 0.0028 14.7 2.6 18 132-149 3-20 (35)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.94 E-value=1.7e-25 Score=153.10 Aligned_cols=147 Identities=33% Similarity=0.571 Sum_probs=136.9
Q ss_pred CCCcCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC--C
Q 041237 35 SLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG--G 112 (185)
Q Consensus 35 ~~~~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--~ 112 (185)
.....+..++.+++.+|..+|++++|.|+..+|..+++.+|..++.+.+..++..+|. +++.|+|.+|+.++.... .
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 3445668899999999999999999999999999999999999999999999999999 999999999999988744 5
Q ss_pred CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 113 IRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 113 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
..+++++++|+.||.+++|+|+..+++.+++.+|..+++++++.++..+|.+++|.|++++|.+.+....
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 6689999999999999999999999999999999999999999999999999999999999999887543
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.93 E-value=3.5e-24 Score=148.75 Aligned_cols=141 Identities=44% Similarity=0.745 Sum_probs=131.3
Q ss_pred chhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCC--C----
Q 041237 40 FQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGG--I---- 113 (185)
Q Consensus 40 ~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~--~---- 113 (185)
+..+..++..+|..+|++++|+|+..++..++..++..++..++..++..+|.+++|.|++++|+.++..... .
T Consensus 3 ~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 3 SEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccc
Confidence 4567889999999999999999999999999999999999999999999999999999999999999886441 1
Q ss_pred CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 114 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
..+.++.+|+.+|.+++|+||..||++++..+|..++.+++..+++.+|.+++|.|+|.+|.+++..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 3458999999999999999999999999999999999999999999999999999999999998865
No 3
>PTZ00183 centrin; Provisional
Probab=99.90 E-value=1.5e-21 Score=136.43 Aligned_cols=144 Identities=31% Similarity=0.568 Sum_probs=131.4
Q ss_pred CchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhC--CCCCHH
Q 041237 39 TFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKG--GGIRTM 116 (185)
Q Consensus 39 ~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~--~~~~~~ 116 (185)
..+.+.+++..+|..+|.+++|.|+..+|..++..++.......+..++..+|.+++|.|++++|..++... ......
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 90 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPRE 90 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHH
Confidence 447788999999999999999999999999999998877888899999999999999999999999887652 344567
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 117 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
.++.+|+.+|.+++|.|+..||..++..++..++++++..++..+|.+++|.|++++|..++.+..
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 899999999999999999999999999999999999999999999999999999999999987643
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.89 E-value=2.1e-21 Score=134.16 Aligned_cols=142 Identities=35% Similarity=0.608 Sum_probs=129.2
Q ss_pred CchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC--CCCHH
Q 041237 39 TFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG--GIRTM 116 (185)
Q Consensus 39 ~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--~~~~~ 116 (185)
.++...+.+..+|..+|.+++|.|+..+|..++..++..+....+..+|..+|.+++|.|++++|+.++.... .....
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~ 84 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEE 84 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHH
Confidence 3567788999999999999999999999999999888878888999999999999999999999999877532 34456
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 117 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
.++.+|..+|.+++|.|+.++|..++...+..++.+.+..++..+|.+++|.|++++|..++..
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999999999999998764
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.2e-20 Score=125.53 Aligned_cols=144 Identities=33% Similarity=0.552 Sum_probs=133.3
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhC--CCCCH
Q 041237 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKG--GGIRT 115 (185)
Q Consensus 38 ~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~--~~~~~ 115 (185)
..++.+...++..|..+|.+++|+|+..||...+..+|..+...++..+...+|+++.|.|++++|+..+... ...+.
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~ 105 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTK 105 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcH
Confidence 3556778899999999999999999999999999999999999999999999999999999999999876542 24588
Q ss_pred HHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 116 MDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 116 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
+++..+|+.+|.|++|.|+..+|+.+.+++|.+++++++.++++.+|.+++|.|+-++|.+++++.
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998764
No 6
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=1.6e-19 Score=127.55 Aligned_cols=136 Identities=25% Similarity=0.384 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc-CccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHH
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIG-QASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSA 121 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 121 (185)
.-..+...|...|++.+|.|+.+|+...+.... .....+.++.++..+|.+.+|.|+++||..+|+. ...++.+
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~-----i~~Wr~v 129 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY-----INQWRNV 129 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH-----HHHHHHH
Confidence 456788899999999999999999999998653 4677888999999999999999999999999998 8899999
Q ss_pred HHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhhh
Q 041237 122 FRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMK 183 (185)
Q Consensus 122 f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 183 (185)
|+.+|.|++|+|+..||++.+..+|+.++++..+.+++.+|..+.|.|.+++|+++|.....
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888999999999999988754
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.81 E-value=1.1e-18 Score=114.74 Aligned_cols=140 Identities=28% Similarity=0.422 Sum_probs=125.8
Q ss_pred CchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCC--CCCcccHHHHHHHHHhCC----C
Q 041237 39 TFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLD--GDGFIDFKEFMEAHKKGG----G 112 (185)
Q Consensus 39 ~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~----~ 112 (185)
.++.+..+++.+|..+|..++|+|+..+...+++.+|.+++..++.+.....+++ +-..|+|++|...+.... .
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 4566779999999999999999999999999999999999999999999988877 557899999988776532 4
Q ss_pred CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 113 IRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 113 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
.+-+..-+.++.||++++|+|...|++++|..+|..++++++..++.-. .|.+|-|+|+.|.+-+.
T Consensus 85 ~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 85 GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 5567778899999999999999999999999999999999999999988 68899999999988764
No 8
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.80 E-value=7.3e-18 Score=112.72 Aligned_cols=138 Identities=26% Similarity=0.444 Sum_probs=127.4
Q ss_pred CchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhC--CCCCHH
Q 041237 39 TFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKG--GGIRTM 116 (185)
Q Consensus 39 ~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~--~~~~~~ 116 (185)
..+.++.+++++|..+|.|.+|.|..++++.++..+|..++++++..++... .|.|+|.-|+.++... +..+++
T Consensus 26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~ 101 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEE 101 (171)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHH
Confidence 3477899999999999999999999999999999999999999999998765 6899999999998763 355678
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 117 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
.+..+|+.||.+++|+|..+.|+.+|...|..+++++|..+++.+-++..|.|+|..|..++..
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 8999999999999999999999999999999999999999999999999999999999999874
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.78 E-value=1.9e-17 Score=117.21 Aligned_cols=139 Identities=29% Similarity=0.487 Sum_probs=116.8
Q ss_pred CchhhHHHHHHHHHHhcCC-CCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCc-ccHHHHHHHHHhCC--CCC
Q 041237 39 TFQADRNEMKRVFDRFDSN-KDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGF-IDFKEFMEAHKKGG--GIR 114 (185)
Q Consensus 39 ~~~~~~~~l~~~f~~~D~~-~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~--~~~ 114 (185)
.+..++..+..+|..+|++ ++|+|+.+||..+.. +. ......+++..++.+++|. |++++|++++..+. ...
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~---~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LA---LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHH-Hh---cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH
Confidence 3466889999999999999 999999999998883 22 2235788999999999998 99999999998866 333
Q ss_pred HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh-CCCCC--HH----HHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 115 TMDIQSAFRTFDKNDDGKISAEEILEMLRRL-GESCS--LE----DCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 115 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~-~~~~~--~~----~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
.+.++.+|+.||.+++|+|+.+|+.+++..+ +...+ ++ .++.++..+|.++||+|+++||.+++.+.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 4589999999999999999999999999976 33333 33 46778899999999999999999998876
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.77 E-value=1.6e-17 Score=117.76 Aligned_cols=147 Identities=24% Similarity=0.436 Sum_probs=124.1
Q ss_pred CCcCchhhHHHHHHHHHHhcCCC-CCcccHHHHHHHHHHhcC-ccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-C
Q 041237 36 LLPTFQADRNEMKRVFDRFDSNK-DGKISQMEYKAILRAIGQ-ASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-G 112 (185)
Q Consensus 36 ~~~~~~~~~~~l~~~f~~~D~~~-~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~ 112 (185)
+...+..+..+++.++..+-.+. +|.++..+|+.+++.... ..+....+.+|+.+|.+++|.|++.||+.++.... +
T Consensus 17 l~~~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG 96 (193)
T KOG0044|consen 17 LVQQTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG 96 (193)
T ss_pred HHHhcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC
Confidence 33456778899999999985554 899999999999998764 55666788999999999999999999999888755 6
Q ss_pred CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh----CC-------CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 113 IRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL----GE-------SCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 113 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
...+.++.+|+.||.+++|+|+++|+..++..+ +. ...++.+..+|..+|.|+||.|+++||...+...
T Consensus 97 t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 677889999999999999999999999999865 21 1235568999999999999999999999988765
Q ss_pred h
Q 041237 182 M 182 (185)
Q Consensus 182 ~ 182 (185)
.
T Consensus 177 ~ 177 (193)
T KOG0044|consen 177 P 177 (193)
T ss_pred H
Confidence 3
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.73 E-value=2e-16 Score=121.25 Aligned_cols=138 Identities=23% Similarity=0.432 Sum_probs=125.7
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCc-cChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHH
Q 041237 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQA-SMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTM 116 (185)
Q Consensus 38 ~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 116 (185)
++.++...+++.+|..+|.+++|.++..++...+..+..+ ........+|...|.|.+|.++|+||.+.+... +.
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~----E~ 82 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK----EL 82 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh----HH
Confidence 3456667789999999999999999999999999888765 667778889999999999999999999998853 67
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 117 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
++..+|..+|.+.+|.|+..|+.+.++..|++++.++++++++.+|+++++.|+++||.+.+.
T Consensus 83 ~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 83 ELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 888999999999999999999999999999999999999999999999999999999988764
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.62 E-value=5.3e-14 Score=99.79 Aligned_cols=129 Identities=22% Similarity=0.357 Sum_probs=117.0
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-CCCHH
Q 041237 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTM 116 (185)
Q Consensus 38 ~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~ 116 (185)
...+.+++.++.+..++|.+.+|+|..+||..++..+. .|+.+|+.+|.|++|.|+..|+..++..+. ....+
T Consensus 87 ~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~------~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq 160 (221)
T KOG0037|consen 87 TWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN------QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQ 160 (221)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH------HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHH
Confidence 45677899999999999999999999999999998876 799999999999999999999999999887 67788
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCc--ccHHHHHHHH
Q 041237 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGM--VNMDEFMTMM 178 (185)
Q Consensus 117 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~--I~~~ef~~~l 178 (185)
-...++++||..+.|.|.+++|.++|..+ ..+-+.|+..|.+..|. |++++|+.+.
T Consensus 161 ~~~~lv~kyd~~~~g~i~FD~FI~ccv~L------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 161 FYNLLVRKYDRFGGGRIDFDDFIQCCVVL------QRLTEAFRRRDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred HHHHHHHHhccccCCceeHHHHHHHHHHH------HHHHHHHHHhccccceeEEEeHHHHHHHh
Confidence 88999999998889999999999999987 56788999999999995 6799998764
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.50 E-value=6.4e-13 Score=92.20 Aligned_cols=103 Identities=31% Similarity=0.529 Sum_probs=92.2
Q ss_pred hhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCC-----CHHH
Q 041237 80 ISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESC-----SLED 153 (185)
Q Consensus 80 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~-----~~~~ 153 (185)
..++..+|..+|.+++|.|+..++..+++... ..+..++..++..+|.+++|.|+.++|..++....... +.++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 34688899999999999999999999999877 66899999999999999999999999999999775432 3458
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 154 CRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 154 ~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
+..+|+.+|.+++|.|+..|+..++....
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 99999999999999999999999988653
No 14
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.47 E-value=2.3e-12 Score=88.69 Aligned_cols=120 Identities=21% Similarity=0.466 Sum_probs=100.9
Q ss_pred hhhhhhhhhcCCCCcC-----------chhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-cCccChhhHHHHHHHhc
Q 041237 24 RLFSSRDRQNSSLLPT-----------FQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAI-GQASMISEVPKIFQVVD 91 (185)
Q Consensus 24 ~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d 91 (185)
.+|...+....+.++. ...+...+.++|..+|. +.|.|+..+|..++... ....+.+++..+|+.||
T Consensus 24 eaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD 102 (160)
T COG5126 24 EAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFD 102 (160)
T ss_pred HHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhC
Confidence 4555555555555442 23356788999999999 89999999999999875 45677899999999999
Q ss_pred CCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 041237 92 LDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRR 144 (185)
Q Consensus 92 ~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 144 (185)
.+++|.|+..+++.++.... ....++++.+++.+|++++|.|+.++|.+.+..
T Consensus 103 ~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 103 KDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999876 778899999999999999999999999998764
No 15
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5e-13 Score=99.98 Aligned_cols=142 Identities=19% Similarity=0.358 Sum_probs=117.6
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhC-------C--
Q 041237 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKG-------G-- 111 (185)
Q Consensus 41 ~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~-------~-- 111 (185)
..+..++..++..+|.+++|.|+..|+..++.............+.+..+|.+.+|.|+|+++....... .
T Consensus 73 ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 73 EESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred chhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 3477889999999999999999999999999887666677788888999999999999999998876531 0
Q ss_pred ------CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 112 ------GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGE-SCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 112 ------~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
.....+-+.-|+..|.|++|.+|.+||..|+..... .+.+-.+.+-+...|.|+||+|+++||+.-+.+..
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 111233467899999999999999999999997654 34555688889999999999999999998776654
No 16
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.45 E-value=1.1e-12 Score=101.66 Aligned_cols=138 Identities=19% Similarity=0.379 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC--------
Q 041237 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAI-GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-------- 111 (185)
Q Consensus 41 ~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-------- 111 (185)
..-..++...|..+|..++|+|+..+...++..+ +..+++..+.--. ...+.+|.+.|.+..+.+....
T Consensus 460 ~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~s 537 (631)
T KOG0377|consen 460 RSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSS 537 (631)
T ss_pred HhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhH
Confidence 3345678889999999999999999999999885 6777776655433 3334567888887766554321
Q ss_pred -----CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 112 -----GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL----GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 112 -----~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
......++.+|+.+|.|++|.|+.+||+..|+-+ +..++..++.++-+.+|-|+||.|++.||+.++.=
T Consensus 538 lvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 538 LVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 0113457889999999999999999999999866 56788999999999999999999999999998753
No 17
>PLN02964 phosphatidylserine decarboxylase
Probab=99.45 E-value=2.9e-12 Score=105.85 Aligned_cols=103 Identities=23% Similarity=0.389 Sum_probs=91.0
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc-CccChhh---HHHHHHHhcCCCCCcccHHHHHHHHHhCC-C
Q 041237 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIG-QASMISE---VPKIFQVVDLDGDGFIDFKEFMEAHKKGG-G 112 (185)
Q Consensus 38 ~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~ 112 (185)
..+..+.+++..+|..+|++++|++ +..++..++ ..++..+ ++.+|..+|.+++|.|+++||+.++.... .
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~ 211 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNL 211 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC
Confidence 4556788999999999999999987 888888888 4666666 79999999999999999999999888654 4
Q ss_pred CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 041237 113 IRTMDIQSAFRTFDKNDDGKISAEEILEMLRR 144 (185)
Q Consensus 113 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 144 (185)
...++++.+|+.+|++++|+|+.+||..++..
T Consensus 212 ~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 212 VAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 56788999999999999999999999999998
No 18
>PTZ00183 centrin; Provisional
Probab=99.42 E-value=9.5e-12 Score=86.66 Aligned_cols=102 Identities=28% Similarity=0.476 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-CCCHHHHHH
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAI-GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQS 120 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~ 120 (185)
....+..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+.+||..++.... ......+..
T Consensus 51 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~ 130 (158)
T PTZ00183 51 KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQE 130 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 45678899999999999999999999887654 3445667889999999999999999999999988654 567888999
Q ss_pred HHHhhcCCCCCCcCHHHHHHHHHH
Q 041237 121 AFRTFDKNDDGKISAEEILEMLRR 144 (185)
Q Consensus 121 ~f~~~d~~~~g~i~~~ef~~~l~~ 144 (185)
+|..+|.+++|.|++++|..++..
T Consensus 131 ~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 131 MIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHhc
Confidence 999999999999999999998875
No 19
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.3e-12 Score=96.51 Aligned_cols=134 Identities=22% Similarity=0.366 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcC-ccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCC------CCH
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ-ASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGG------IRT 115 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~------~~~ 115 (185)
-+..=...|+..|.|++|.++.+||..+++.-.. ....-.+..-+.-.|+|++|.|+++||+.=+..... .-.
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 3455567799999999999999999999865432 222334555678899999999999999875554321 112
Q ss_pred HHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 041237 116 MDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176 (185)
Q Consensus 116 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 176 (185)
.+-+..+..+|+|++|+|+.+|++..+...+......++..++..+|.|+||++|++|-+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 3345788899999999999999999988888888889999999999999999999998654
No 20
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.36 E-value=4.1e-12 Score=75.66 Aligned_cols=62 Identities=44% Similarity=0.775 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHH----HHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLED----CRKMVRAVDTDGDGMVNMDEFMTMM 178 (185)
Q Consensus 117 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~I~~~ef~~~l 178 (185)
+++.+|+.+|.+++|+|+.+||..++..++....++. +..+|..+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3678999999999999999999999999987665444 5555999999999999999999875
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.35 E-value=5e-12 Score=79.32 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcC-CCCCCcCHHHHHHHHHH-hCCCCCH-HHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 115 TMDIQSAFRTFDK-NDDGKISAEEILEMLRR-LGESCSL-EDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 115 ~~~~~~~f~~~d~-~~~g~i~~~ef~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
...+..+|+.||. +++|+|+..||+.++.. +|..++. +++..++..+|.|++|+|+|+||..++....
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3567889999999 99999999999999999 8877887 8999999999999999999999999887653
No 22
>PTZ00184 calmodulin; Provisional
Probab=99.34 E-value=3.8e-11 Score=82.68 Aligned_cols=99 Identities=27% Similarity=0.466 Sum_probs=85.6
Q ss_pred hHHHHHHHhcCCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh-CCCCCHHHHHHHHH
Q 041237 82 EVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL-GESCSLEDCRKMVR 159 (185)
Q Consensus 82 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~~~ 159 (185)
.+...|..+|.+++|.|++++|..++.... ......++.+|+.+|.+++|.|++++|..++... ......+.+..+|.
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~ 91 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFK 91 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 466789999999999999999999887655 4556789999999999999999999999998865 33345677899999
Q ss_pred HhcCCCCCcccHHHHHHHHHh
Q 041237 160 AVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 160 ~~d~~~~g~I~~~ef~~~l~~ 180 (185)
.+|.+++|.|+.++|..++..
T Consensus 92 ~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 92 VFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred hhCCCCCCeEeHHHHHHHHHH
Confidence 999999999999999988865
No 23
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.32 E-value=1.9e-11 Score=86.96 Aligned_cols=104 Identities=29% Similarity=0.467 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhC-----------
Q 041237 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKG----------- 110 (185)
Q Consensus 42 ~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~----------- 110 (185)
.+..-...+|..+|.+++|.|+..||...+..+.....++.+...|+.+|.|++|+|+++|+..++...
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~ 140 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPE 140 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCc
Confidence 355667889999999999999999999888887666778888889999999999999999998876541
Q ss_pred -CCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh
Q 041237 111 -GGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL 145 (185)
Q Consensus 111 -~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 145 (185)
....++.+..+|+.+|.+++|.||.+||...+..-
T Consensus 141 ~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 141 DEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred ccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 12246778899999999999999999999887753
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.32 E-value=1.3e-11 Score=73.48 Aligned_cols=62 Identities=35% Similarity=0.635 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccCh----hhHHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMI----SEVPKIFQVVDLDGDGFIDFKEFMEAH 107 (185)
Q Consensus 46 ~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~~d~~~~g~i~~~ef~~~~ 107 (185)
.++.+|..+|.+++|+|+.+||..++..++...+. ..+..+|+.+|++++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 46789999999999999999999999998755443 445556899999999999999998764
No 25
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=1.1e-10 Score=79.18 Aligned_cols=101 Identities=26% Similarity=0.384 Sum_probs=90.1
Q ss_pred hhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHH
Q 041237 81 SEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRR-LGESCSLEDCRKMV 158 (185)
Q Consensus 81 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~-~~~~~~~~~~~~~~ 158 (185)
..+...|..||++++|.|+++|+..+++... ....+++..+...+|+++.|.|+.++|+..+.. ++..-+.+++..+|
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 4678889999999999999999988888766 566788899999999999999999999998764 46666899999999
Q ss_pred HHhcCCCCCcccHHHHHHHHHhh
Q 041237 159 RAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 159 ~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
+.+|-+++|+|++.+|..++..+
T Consensus 113 rl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 113 RLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred HcccccCCCCcCHHHHHHHHHHh
Confidence 99999999999999999988765
No 26
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.28 E-value=3.3e-11 Score=75.60 Aligned_cols=70 Identities=13% Similarity=0.255 Sum_probs=63.3
Q ss_pred chhhHHHHHHHHHHhcC-CCCCcccHHHHHHHHHH-hcCccCh-hhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 40 FQADRNEMKRVFDRFDS-NKDGKISQMEYKAILRA-IGQASMI-SEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 40 ~~~~~~~l~~~f~~~D~-~~~g~l~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
.+..+..+..+|..+|+ +++|+|+..||+.++.. ++..++. ..+..+++.+|.|++|.|+|+||..++..
T Consensus 3 lE~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 3 LEKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 35678899999999999 99999999999999998 8766777 89999999999999999999999988765
No 27
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.27 E-value=3.3e-11 Score=80.33 Aligned_cols=118 Identities=23% Similarity=0.375 Sum_probs=91.3
Q ss_pred cccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCC--CHHHHHHHHHhhcCCCCCCcCHHHH
Q 041237 61 KISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGI--RTMDIQSAFRTFDKNDDGKISAEEI 138 (185)
Q Consensus 61 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~f~~~d~~~~g~i~~~ef 138 (185)
+++.+.+..+..... ..--+++...|..+|.|.+++++|+..+..++.. ..-.+..+|+.||-++++.|...++
T Consensus 55 ~vp~e~i~kMPELke----npfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL 130 (189)
T KOG0038|consen 55 KVPFELIEKMPELKE----NPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDL 130 (189)
T ss_pred eecHHHHhhChhhhc----ChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHH
Confidence 455555554443221 2234677888999999999999999998876633 3445678999999999999999999
Q ss_pred HHHHHHhC-CCCCHHHH----HHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 139 LEMLRRLG-ESCSLEDC----RKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 139 ~~~l~~~~-~~~~~~~~----~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
.+.+..+. -.++++++ +++++.+|.+++|++++.+|..++.+..
T Consensus 131 ~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 131 EKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 99999884 45677764 5667888999999999999999987653
No 28
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.25 E-value=5.8e-11 Score=74.56 Aligned_cols=67 Identities=25% Similarity=0.504 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhc-CCCCC-CcCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 115 TMDIQSAFRTFD-KNDDG-KISAEEILEMLRR-----LGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 115 ~~~~~~~f~~~d-~~~~g-~i~~~ef~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
...+..+|+.|| .+++| .|+.+||+.+++. .|...+++++..++..+|.|++|+|+|.+|+.++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456789999998 79999 5999999999999 8888899999999999999999999999999988764
No 29
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.22 E-value=2.5e-11 Score=94.17 Aligned_cols=142 Identities=21% Similarity=0.350 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCc----------c-----ChhhHHH--HHHHhcCCCCCcccHHHHHH
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQA----------S-----MISEVPK--IFQVVDLDGDGFIDFKEFME 105 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~----------~-----~~~~~~~--~~~~~d~~~~g~i~~~ef~~ 105 (185)
+...++-+|..+|.|++|.|+.+||..+.+..... . ....+.. .-..|.+++++.+++++|.+
T Consensus 231 p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~ 310 (489)
T KOG2643|consen 231 PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLK 310 (489)
T ss_pred CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHH
Confidence 44567778999999999999999998777443210 0 0111111 23456778888888888887
Q ss_pred HHHhCC------------------------------------CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh----
Q 041237 106 AHKKGG------------------------------------GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL---- 145 (185)
Q Consensus 106 ~~~~~~------------------------------------~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~---- 145 (185)
++.++. ......++.+-+.++.++ ..||.+||..+++-+
T Consensus 311 F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~-~gISl~Ef~~Ff~Fl~~l~ 389 (489)
T KOG2643|consen 311 FQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDG-KGISLQEFKAFFRFLNNLN 389 (489)
T ss_pred HHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCC-CCcCHHHHHHHHHHHhhhh
Confidence 776521 000112333444444332 236666655555422
Q ss_pred -----------------------------CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhhhcC
Q 041237 146 -----------------------------GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMKLG 185 (185)
Q Consensus 146 -----------------------------~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~ 185 (185)
|+++++-.+.-+|..+|.|+||.++.+||+++|.+..+.|
T Consensus 390 dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhrg 458 (489)
T KOG2643|consen 390 DFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHRG 458 (489)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhcc
Confidence 3444444566678888999999999999999999988775
No 30
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.20 E-value=1.9e-10 Score=72.22 Aligned_cols=69 Identities=26% Similarity=0.440 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-----hcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 41 QADRNEMKRVFDRFD-SNKDG-KISQMEYKAILRA-----IGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 41 ~~~~~~l~~~f~~~D-~~~~g-~l~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
+..+..+..+|..+| ++++| +|+..+|..++.. ++...+..++..+++.+|.+++|.|+|++|+.++..
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 567889999999998 79999 5999999999998 788788889999999999999999999999987764
No 31
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.13 E-value=5.2e-10 Score=70.24 Aligned_cols=67 Identities=18% Similarity=0.381 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcC-CC-CCCcCHHHHHHHHHH---hCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 116 MDIQSAFRTFDK-ND-DGKISAEEILEMLRR---LGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 116 ~~~~~~f~~~d~-~~-~g~i~~~ef~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
..+-.+|..|+. +| +|+|+.+||++++.. +|..++++++..+++.+|.|++|+|+|.||.+++....
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 345678999998 66 889999999999973 68889999999999999999999999999999887653
No 32
>PLN02964 phosphatidylserine decarboxylase
Probab=99.12 E-value=1.1e-09 Score=90.92 Aligned_cols=98 Identities=16% Similarity=0.335 Sum_probs=82.5
Q ss_pred hhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC--CCCHHH---HHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHH
Q 041237 80 ISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG--GIRTMD---IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDC 154 (185)
Q Consensus 80 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--~~~~~~---~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 154 (185)
..++...|..+|++++|.+ +..+++... ..++.+ ++.+|..+|.+++|.|+.+||..++..++...+++++
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL 217 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKK 217 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHH
Confidence 3567778999999999987 444444433 233444 7899999999999999999999999999877889999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 155 RKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 155 ~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
..+|..+|.|++|.|+++||.+++...
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999999999999998763
No 33
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.12 E-value=2.9e-10 Score=64.86 Aligned_cols=52 Identities=46% Similarity=0.783 Sum_probs=48.8
Q ss_pred CCCCcCHHHHHHHHHHhCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 129 DDGKISAEEILEMLRRLGES-CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 129 ~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
++|.|+.++|+.++..+|.. ++++++..+|..+|.+++|.|+++||.+++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36899999999999888999 99999999999999999999999999999875
No 34
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.11 E-value=6.6e-10 Score=70.62 Aligned_cols=68 Identities=22% Similarity=0.372 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhc-CCCCC-CcCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 115 TMDIQSAFRTFD-KNDDG-KISAEEILEMLRRL-----GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 115 ~~~~~~~f~~~d-~~~~g-~i~~~ef~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
...+..+|+.|| .+++| +|+..||+.++... ....++.++..++..+|.|++|.|+|.||+.++....
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 345678899999 67898 59999999999763 3344778899999999999999999999999887654
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.11 E-value=7.5e-10 Score=70.31 Aligned_cols=68 Identities=24% Similarity=0.489 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhc-CCCCC-CcCHHHHHHHHHH-hC----CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 115 TMDIQSAFRTFD-KNDDG-KISAEEILEMLRR-LG----ESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 115 ~~~~~~~f~~~d-~~~~g-~i~~~ef~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
.+.++.+|..+| .+++| .|+..||+.+++. +| ...+++++..++..+|.+++|.|++.+|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 467889999997 99999 5999999999985 44 345788999999999999999999999999887653
No 36
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.11 E-value=6.1e-10 Score=70.99 Aligned_cols=67 Identities=18% Similarity=0.413 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcC-CC-CCCcCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 115 TMDIQSAFRTFDK-ND-DGKISAEEILEMLRR-----LGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 115 ~~~~~~~f~~~d~-~~-~g~i~~~ef~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
...+..+|..+|. ++ +|.|+..|++.++.. ++...+++++..++..+|.+++|.|++.+|++++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4567889999986 87 699999999999886 4667788899999999999999999999999887653
No 37
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.10 E-value=1.1e-09 Score=95.60 Aligned_cols=139 Identities=20% Similarity=0.403 Sum_probs=111.8
Q ss_pred cCCCCcCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCcc-------ChhhHHHHHHHhcCCCCCcccHHHHHH
Q 041237 33 NSSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQAS-------MISEVPKIFQVVDLDGDGFIDFKEFME 105 (185)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~ef~~ 105 (185)
.+...+.++.+..++..+|..||.+.+|.|+..+|..+++.+|..+ +++.++.+...+|++.+|+|+.++|..
T Consensus 2241 arn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2241 ARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMA 2320 (2399)
T ss_pred hhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHH
Confidence 3555667899999999999999999999999999999999998655 456899999999999999999999999
Q ss_pred HHHhCC---CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh----cC----CCCCcccHHHH
Q 041237 106 AHKKGG---GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV----DT----DGDGMVNMDEF 174 (185)
Q Consensus 106 ~~~~~~---~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~----d~----~~~g~I~~~ef 174 (185)
++.... ......++.+|+.+|. +..+|+.+++.+-+ +++++..++..+ ++ .-.+.++|.+|
T Consensus 2321 fmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~df 2392 (2399)
T KOG0040|consen 2321 FMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDF 2392 (2399)
T ss_pred HHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHH
Confidence 998754 4456799999999998 78899999886543 345555555444 32 12235788899
Q ss_pred HHHHH
Q 041237 175 MTMMT 179 (185)
Q Consensus 175 ~~~l~ 179 (185)
.+.+.
T Consensus 2393 v~sl~ 2397 (2399)
T KOG0040|consen 2393 VNSLF 2397 (2399)
T ss_pred HHHHh
Confidence 88765
No 38
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.09 E-value=1e-09 Score=68.86 Aligned_cols=71 Identities=17% Similarity=0.369 Sum_probs=62.8
Q ss_pred CchhhHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH---hcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 39 TFQADRNEMKRVFDRFDS-NK-DGKISQMEYKAILRA---IGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 39 ~~~~~~~~l~~~f~~~D~-~~-~g~l~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
..+..+..+..+|..+|. ++ +|+|+.+||+.++.. ++...+..++..+++.+|.+++|.|+|+||+.++..
T Consensus 4 ~~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 4 PLDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 346678899999999998 66 899999999999963 577889999999999999999999999999987764
No 39
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.09 E-value=1.4e-09 Score=77.29 Aligned_cols=100 Identities=29% Similarity=0.468 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCCCCCc-ccHHHHHHHHHHhcCccChh-hHHHHHHHhcCCCCCcccHHHHHHHHHhCCC--CC------H
Q 041237 46 EMKRVFDRFDSNKDGK-ISQMEYKAILRAIGQASMIS-EVPKIFQVVDLDGDGFIDFKEFMEAHKKGGG--IR------T 115 (185)
Q Consensus 46 ~l~~~f~~~D~~~~g~-l~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~--~~------~ 115 (185)
-...++..++.+++|. |+.++|...+.......+.. .++-+|+.+|.+++|.|+.+|+..++...-. .. .
T Consensus 67 ~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~ 146 (187)
T KOG0034|consen 67 LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLE 146 (187)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHH
Confidence 3567788898888888 99999999998876555544 8889999999999999999999998876331 12 2
Q ss_pred HHHHHHHHhhcCCCCCCcCHHHHHHHHHHh
Q 041237 116 MDIQSAFRTFDKNDDGKISAEEILEMLRRL 145 (185)
Q Consensus 116 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 145 (185)
.-++..|..+|.+++|.|+.+||.+++...
T Consensus 147 ~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 147 DIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 335678999999999999999999998765
No 40
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.08 E-value=1.4e-09 Score=69.14 Aligned_cols=70 Identities=24% Similarity=0.365 Sum_probs=59.5
Q ss_pred chhhHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHHh-----cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 40 FQADRNEMKRVFDRFD-SNKDG-KISQMEYKAILRAI-----GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 40 ~~~~~~~l~~~f~~~D-~~~~g-~l~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
.+..+..+..+|..+| .+++| +|+..||..++... ....+...+..+++.+|.+++|.|+|+||+.++..
T Consensus 5 le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 5 LEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 4667889999999998 78998 59999999999762 23446778999999999999999999999988765
No 41
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.06 E-value=1.4e-09 Score=64.64 Aligned_cols=60 Identities=30% Similarity=0.442 Sum_probs=51.8
Q ss_pred HHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 119 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
+.+|..+|.+++|.|+.+|+..++...|. +.+++..++..+|.+++|.|++.+|..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 46888999999999999999999988764 6788999999999999999999999887754
No 42
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.04 E-value=2.1e-09 Score=68.52 Aligned_cols=69 Identities=20% Similarity=0.367 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH-----hcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 41 QADRNEMKRVFDRFDS-NK-DGKISQMEYKAILRA-----IGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 41 ~~~~~~l~~~f~~~D~-~~-~g~l~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
......+..+|..+|. ++ +|+|+..|+..++.. ++...+...+..++..+|.+++|.|+|++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 4 EHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4457788999999987 87 699999999998875 355678888999999999999999999999988765
No 43
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.03 E-value=2.4e-09 Score=67.97 Aligned_cols=70 Identities=27% Similarity=0.454 Sum_probs=59.6
Q ss_pred chhhHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-hc----CccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 40 FQADRNEMKRVFDRFD-SNKDG-KISQMEYKAILRA-IG----QASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 40 ~~~~~~~l~~~f~~~D-~~~~g-~l~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
.+.....++.+|..+| .+++| .|+..|+..++.. ++ ..++...+..++..+|.+++|.|+|++|+.++..
T Consensus 4 ~e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 4 LETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3556788999999997 99999 4999999999975 44 2457888999999999999999999999987764
No 44
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.03 E-value=2.8e-09 Score=68.20 Aligned_cols=68 Identities=29% Similarity=0.472 Sum_probs=58.3
Q ss_pred chhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 40 FQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 40 ~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
+..+...+..+|..+|.+++|.|+..++..++...+ .+..++..++..+|.+++|.|++++|+.++..
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 456788899999999999999999999999988755 57778889999999999999999999887764
No 45
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.02 E-value=2.5e-09 Score=67.34 Aligned_cols=68 Identities=24% Similarity=0.445 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhcC--CCCCCcCHHHHHHHHHH-hCCC----CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 115 TMDIQSAFRTFDK--NDDGKISAEEILEMLRR-LGES----CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 115 ~~~~~~~f~~~d~--~~~g~i~~~ef~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
.+.++.+|..+|. +++|.|+..+|..+++. .|.. .+.+++..++..+|.+++|.|++++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4557788999999 79999999999999976 4543 3588999999999999999999999999887654
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.01 E-value=2.9e-09 Score=68.11 Aligned_cols=65 Identities=28% Similarity=0.419 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 115 TMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 115 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
...++.+|..+|.+++|.|+.+++..+++..+ ++++++..++..+|.+++|.|++++|+.++...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 34567788888888888888888888888765 567788888888888888888888888877654
No 47
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.99 E-value=4.1e-09 Score=61.09 Aligned_cols=61 Identities=48% Similarity=0.860 Sum_probs=55.3
Q ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178 (185)
Q Consensus 118 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 178 (185)
+..+|..+|.+++|.|+..++..++...+...+.+.+..++..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999988899999999999999999999999998765
No 48
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.99 E-value=6.1e-09 Score=81.69 Aligned_cols=131 Identities=17% Similarity=0.287 Sum_probs=103.4
Q ss_pred hHHHHHHH---HHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHH----HhcCCCCCcccHHHHHHHHHhCC-CCC
Q 041237 43 DRNEMKRV---FDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQ----VVDLDGDGFIDFKEFMEAHKKGG-GIR 114 (185)
Q Consensus 43 ~~~~l~~~---f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~----~~d~~~~g~i~~~ef~~~~~~~~-~~~ 114 (185)
+.+..+.+ |..+|.|.+|.|+.+++...-. ...+...+.++|. .+-...+|.++|++|+.++.... ..+
T Consensus 273 S~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t 349 (493)
T KOG2562|consen 273 SYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDT 349 (493)
T ss_pred eHHHHHHHHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCC
Confidence 34555555 8899999999999999875553 3345667888888 33444678999999999887755 666
Q ss_pred HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh-------C-CCCC-HHHHHHHHHHhcCCCCCcccHHHHHH
Q 041237 115 TMDIQSAFRTFDKNDDGKISAEEILEMLRRL-------G-ESCS-LEDCRKMVRAVDTDGDGMVNMDEFMT 176 (185)
Q Consensus 115 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~-------~-~~~~-~~~~~~~~~~~d~~~~g~I~~~ef~~ 176 (185)
...++..|+.+|.+++|.|+..|++.+...+ + ..+. +..+.++++.+.+...++|++.+|..
T Consensus 350 ~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 350 PASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 7889999999999999999999999998865 1 1222 45578888888888889999999987
No 49
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.98 E-value=3.1e-09 Score=63.14 Aligned_cols=60 Identities=32% Similarity=0.438 Sum_probs=49.6
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 48 ~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
+.+|..+|.+++|.|+.+|+..++...+ .+...+..++..+|.+++|.|++++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 4678888998899999999988887765 36777888888999888899999999887653
No 50
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.98 E-value=4.5e-09 Score=66.15 Aligned_cols=69 Identities=25% Similarity=0.429 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHHHhcC--CCCCcccHHHHHHHHHH-hcCc----cChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 41 QADRNEMKRVFDRFDS--NKDGKISQMEYKAILRA-IGQA----SMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 41 ~~~~~~l~~~f~~~D~--~~~g~l~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
+.+++.++.+|..+|. +++|.|+..+|..++.. ++.. .+...+..++..+|.+++|.|++++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 5678889999999999 89999999999999875 4433 34788999999999999999999999988764
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.95 E-value=7.8e-09 Score=65.00 Aligned_cols=68 Identities=18% Similarity=0.360 Sum_probs=55.7
Q ss_pred HHHHHHHHHh-hcCCCCC-CcCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 115 TMDIQSAFRT-FDKNDDG-KISAEEILEMLRRL-----GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 115 ~~~~~~~f~~-~d~~~~g-~i~~~ef~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
...+..+|+. +|.+++| +|+.+||+.++... +...++.++..++..+|.|++|.|+|+||++++....
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3456788999 6677866 99999999999876 3355678899999999999999999999998887653
No 52
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.95 E-value=2.7e-09 Score=77.41 Aligned_cols=137 Identities=22% Similarity=0.400 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcC---ccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCC-----
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ---ASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIR----- 114 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~----- 114 (185)
....+..+|...|.+.+|+|+..|+..++..... ...-.+....|+..|++++|+|+|+||.--+....+..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 5678999999999999999999999988765321 12223345568999999999999999965332211000
Q ss_pred --------------------------------------------------------HHHHHHHHHhhcCCCCCCcCHHHH
Q 041237 115 --------------------------------------------------------TMDIQSAFRTFDKNDDGKISAEEI 138 (185)
Q Consensus 115 --------------------------------------------------------~~~~~~~f~~~d~~~~g~i~~~ef 138 (185)
..-+..+.+.+|++++..++..||
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 112456677888888888888888
Q ss_pred HHHHHH-----hCCC----CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 139 LEMLRR-----LGES----CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 139 ~~~l~~-----~~~~----~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
.....- .|.+ +.+...+++=+.+|.|.+|.++++|+..++-
T Consensus 259 islpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 259 ISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred hcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 765431 1222 2234466677777888999988888887753
No 53
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.94 E-value=4.6e-09 Score=59.81 Aligned_cols=51 Identities=39% Similarity=0.729 Sum_probs=46.0
Q ss_pred CCCcccHHHHHHHHHHhcCc-cChhhHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 58 KDGKISQMEYKAILRAIGQA-SMISEVPKIFQVVDLDGDGFIDFKEFMEAHK 108 (185)
Q Consensus 58 ~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 108 (185)
++|.|+.++|..++..++.. .+..++..+|..+|.+++|.|+++||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37899999999999777888 9999999999999999999999999998875
No 54
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.93 E-value=9.4e-09 Score=59.54 Aligned_cols=61 Identities=41% Similarity=0.692 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107 (185)
Q Consensus 47 l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 107 (185)
+..+|..+|.+++|.|+.+++..++..++...+...+..+|..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5677888899999999999999998888888888888889999998888999999987754
No 55
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.91 E-value=1.1e-08 Score=67.31 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 115 TMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 115 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
...+..+|..+|.|++|.|+.+|+..+. + ...+..+..+|..+|.|++|.||++||..++.+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 5667889999999999999999999876 2 223566888999999999999999999998854
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.90 E-value=1.8e-08 Score=63.39 Aligned_cols=70 Identities=19% Similarity=0.365 Sum_probs=58.1
Q ss_pred chhhHHHHHHHHHH-hcCCCCC-cccHHHHHHHHHHh-----cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 40 FQADRNEMKRVFDR-FDSNKDG-KISQMEYKAILRAI-----GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 40 ~~~~~~~l~~~f~~-~D~~~~g-~l~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
.+..+..+..+|.. +|.+++| +|+.+||..++... +.......+..+++.+|.|++|.|+|+||+.++..
T Consensus 4 le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 4 TERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 45678889999999 6777865 99999999999775 23455678999999999999999999999987764
No 57
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.85 E-value=2.6e-08 Score=77.73 Aligned_cols=120 Identities=23% Similarity=0.342 Sum_probs=86.2
Q ss_pred cCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC----------------CCCHHHH
Q 041237 55 DSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG----------------GIRTMDI 118 (185)
Q Consensus 55 D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~----------------~~~~~~~ 118 (185)
+-+++|.|++.|+.-++..+. .+...++-.|..||.|+||.|+.+||........ ......+
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS--~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLS--IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHc--cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 345689999999987776554 6777899999999999999999999987653210 0001111
Q ss_pred H--HHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHH-HHHhcCCCCCcccHHHHHHHHHhh
Q 041237 119 Q--SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKM-VRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 119 ~--~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~-~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
. ..-..|.++++++|+.++|.+++..+. +++.++ |..+|+...|.|+-.+|..++.-.
T Consensus 287 nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 287 NSALLTYFFGKRGNGKLSIDEFLKFQENLQ-----EEILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred hhhHHHHhhccCCCccccHHHHHHHHHHHH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 1 234456778888899999988888774 444444 888888777888888887776543
No 58
>PF14658 EF-hand_9: EF-hand domain
Probab=98.83 E-value=2.3e-08 Score=58.36 Aligned_cols=61 Identities=26% Similarity=0.603 Sum_probs=56.8
Q ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHhCC-CCCHHHHHHHHHHhcCCCC-CcccHHHHHHHHHh
Q 041237 120 SAFRTFDKNDDGKISAEEILEMLRRLGE-SCSLEDCRKMVRAVDTDGD-GMVNMDEFMTMMTR 180 (185)
Q Consensus 120 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~I~~~ef~~~l~~ 180 (185)
.+|..+|.++.|.|...++..+|+..+. ..++++++.+...+|+++. |.|+++.|+.+|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999988 7889999999999999998 99999999999875
No 59
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.80 E-value=1.5e-07 Score=73.15 Aligned_cols=126 Identities=26% Similarity=0.344 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-CCCHHHHHH
Q 041237 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQS 120 (185)
Q Consensus 42 ~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~ 120 (185)
...+....+|...|.+.+|.++.+||...+..- +..+..+|+.+|.+.||.|+.+|....++... ....+.+..
T Consensus 48 ~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-----E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k 122 (463)
T KOG0036|consen 48 PNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-----ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAK 122 (463)
T ss_pred CchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHH
Confidence 356778889999999999999999999988643 44788999999999999999999999999876 677888999
Q ss_pred HHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh------cCCCCCcccHHHHHHH
Q 041237 121 AFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV------DTDGDGMVNMDEFMTM 177 (185)
Q Consensus 121 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~------d~~~~g~I~~~ef~~~ 177 (185)
+|...|++++++|+++|++.++.-.. ++.+..++..+ |.+.+..|. ++|...
T Consensus 123 ~~e~~d~~g~~~I~~~e~rd~~ll~p----~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~ 180 (463)
T KOG0036|consen 123 FFEHMDKDGKATIDLEEWRDHLLLYP----ESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKL 180 (463)
T ss_pred HHHHhccCCCeeeccHHHHhhhhcCC----hhHHHHHHHhhhhheEEEccccccCC-cchHHH
Confidence 99999999999999999999877554 34455554333 556666665 555443
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.79 E-value=3.8e-08 Score=61.87 Aligned_cols=67 Identities=16% Similarity=0.349 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCC--CCCCcCHHHHHHHHH-HhCCCCC----HHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 116 MDIQSAFRTFDKN--DDGKISAEEILEMLR-RLGESCS----LEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 116 ~~~~~~f~~~d~~--~~g~i~~~ef~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
..+-.+|..|+.. ++|.|+.+||+.++. ..+..++ ++++..++..+|.+++|.|+|++|+.++....
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4566789999865 478999999999997 5555565 88999999999999999999999999887653
No 61
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.78 E-value=5e-08 Score=64.24 Aligned_cols=63 Identities=27% Similarity=0.413 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107 (185)
Q Consensus 41 ~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 107 (185)
+.....+.-.|..+|.|++|+|+.+|+..+. .......+..+|..+|.|++|.||++||...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3455667777777777777777777777654 22345556667777777777777777777766
No 62
>PF14658 EF-hand_9: EF-hand domain
Probab=98.78 E-value=3.7e-08 Score=57.48 Aligned_cols=61 Identities=26% Similarity=0.539 Sum_probs=56.4
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcC-ccChhhHHHHHHHhcCCCC-CcccHHHHHHHHHh
Q 041237 49 RVFDRFDSNKDGKISQMEYKAILRAIGQ-ASMISEVPKIFQVVDLDGD-GFIDFKEFMEAHKK 109 (185)
Q Consensus 49 ~~f~~~D~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~ 109 (185)
.+|..+|.++.|.|...++..+++..+. .+.+..++.+...+|+++. |.|++++|+.+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999987 8899999999999999998 99999999998874
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.77 E-value=5.6e-08 Score=61.07 Aligned_cols=70 Identities=20% Similarity=0.395 Sum_probs=59.0
Q ss_pred chhhHHHHHHHHHHhcCC--CCCcccHHHHHHHHH-HhcCccC----hhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 40 FQADRNEMKRVFDRFDSN--KDGKISQMEYKAILR-AIGQASM----ISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 40 ~~~~~~~l~~~f~~~D~~--~~g~l~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
.+..+..+..+|..++.. .+|+|+.+||..++. .++...+ ...+..+|..+|.+++|.|+|++|+.++..
T Consensus 3 ~e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 3 LEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 356788899999999866 479999999999996 4554455 788999999999999999999999987764
No 64
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.53 E-value=5.7e-06 Score=56.13 Aligned_cols=115 Identities=12% Similarity=0.272 Sum_probs=91.7
Q ss_pred hhhhhhhhhcCCCCcCchhhHHHHHHHHHHhcC------------CCCCcccHHHHHHHHHH-hcCccChhhHHHHHHHh
Q 041237 24 RLFSSRDRQNSSLLPTFQADRNEMKRVFDRFDS------------NKDGKISQMEYKAILRA-IGQASMISEVPKIFQVV 90 (185)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~D~------------~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~~ 90 (185)
.+|.-.|.+..+++. .+.|+..|..+-+ ..+|-|+..-|..++.. +...-++..+...|..|
T Consensus 36 EAF~~mDqnrDG~Id-----keDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~F 110 (171)
T KOG0031|consen 36 EAFNLMDQNRDGFID-----KEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTF 110 (171)
T ss_pred HHHHHHhccCCCccc-----HHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 566667777777775 4455555544322 13678888888887766 45556788889999999
Q ss_pred cCCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 041237 91 DLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEMLR 143 (185)
Q Consensus 91 d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~ 143 (185)
|.++.|.|.-+.+..++.... ....+++..+|+.+-.+..|.+++..|..++.
T Consensus 111 D~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 111 DDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred CccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 999999999999999998866 77889999999999999999999999999987
No 65
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.51 E-value=8.8e-07 Score=70.42 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=82.9
Q ss_pred CchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCC------
Q 041237 39 TFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGG------ 112 (185)
Q Consensus 39 ~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~------ 112 (185)
..+.+.+.++-.=...|..++|.|+++||+.+-.-++ .++...+.+|+.||+.++|.++++++...+.....
T Consensus 68 e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f 145 (694)
T KOG0751|consen 68 ESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPF 145 (694)
T ss_pred cccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCc
Confidence 3344444444444556788899999999996655555 45777888999999999999999999988765220
Q ss_pred -CC-----------------------------HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 041237 113 -IR-----------------------------TMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVD 162 (185)
Q Consensus 113 -~~-----------------------------~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 162 (185)
.. .+..+.+|+..|+.++|.||.-+|+.++......+....++..+-...
T Consensus 146 ~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~va 225 (694)
T KOG0751|consen 146 NWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVA 225 (694)
T ss_pred cCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhc
Confidence 00 122445566666666666666666666555544444444555544443
Q ss_pred CCCCC-cccHHHH
Q 041237 163 TDGDG-MVNMDEF 174 (185)
Q Consensus 163 ~~~~g-~I~~~ef 174 (185)
...++ ++++..|
T Consensus 226 gg~~~H~vSf~yf 238 (694)
T KOG0751|consen 226 GGNDSHQVSFSYF 238 (694)
T ss_pred CCCCccccchHHH
Confidence 22222 4555444
No 66
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.45 E-value=7.1e-06 Score=68.49 Aligned_cols=138 Identities=17% Similarity=0.337 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHH
Q 041237 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSA 121 (185)
Q Consensus 42 ~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 121 (185)
.....+..+|...|.+++|.++..+...++..+...........+|+..+..+++.+...+|..+........ ++..+
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp--ev~~~ 210 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP--EVYFL 210 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc--hHHHH
Confidence 3567799999999999999999999999999998888899999999999999999999999999877665433 88889
Q ss_pred HHhhcCCCCCCcCHHHHHHHHHHhC--CCCCHHHHHHHHHHhcCCCC----CcccHHHHHHHHHhhh
Q 041237 122 FRTFDKNDDGKISAEEILEMLRRLG--ESCSLEDCRKMVRAVDTDGD----GMVNMDEFMTMMTRSM 182 (185)
Q Consensus 122 f~~~d~~~~g~i~~~ef~~~l~~~~--~~~~~~~~~~~~~~~d~~~~----g~I~~~ef~~~l~~~~ 182 (185)
|..+-. +.+.++.+++..++...+ ..++.+.++.+++.+...+. +.++++.|.++|....
T Consensus 211 f~~~s~-~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~ 276 (746)
T KOG0169|consen 211 FVQYSH-GKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPD 276 (746)
T ss_pred HHHHhC-CCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCcc
Confidence 999964 488999999999999875 35778889999988865443 4599999999987653
No 67
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.44 E-value=2.6e-06 Score=60.22 Aligned_cols=109 Identities=20% Similarity=0.365 Sum_probs=83.9
Q ss_pred CcCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC--CCC
Q 041237 37 LPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG--GIR 114 (185)
Q Consensus 37 ~~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--~~~ 114 (185)
..-+..+++.+..+|..+|.+.+|+|+..|+..++..+|.+-+.--+..++..+|.|.+|.|+|.+|.=+++... ...
T Consensus 91 ~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 91 SEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 334566889999999999999999999999999999999888888889999999999999999999988777633 111
Q ss_pred H-HHHHHH--HHhhcCCCCCCcCHHHHHHHHHHh
Q 041237 115 T-MDIQSA--FRTFDKNDDGKISAEEILEMLRRL 145 (185)
Q Consensus 115 ~-~~~~~~--f~~~d~~~~g~i~~~ef~~~l~~~ 145 (185)
. ..+..+ ...+|..+.|.....-|...=...
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~~ 204 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIEA 204 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHHHHHHh
Confidence 1 112222 333677788877777776654433
No 68
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.44 E-value=2.4e-06 Score=57.40 Aligned_cols=97 Identities=19% Similarity=0.343 Sum_probs=76.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcCc-cChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC--CCCHHH----HHHH
Q 041237 49 RVFDRFDSNKDGKISQMEYKAILRAIGQA-SMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG--GIRTMD----IQSA 121 (185)
Q Consensus 49 ~~f~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--~~~~~~----~~~~ 121 (185)
++-..+..||.|.++.++|..++..+... +.+-.+...|+.+|-|+++.|.-+++...+.... ....++ ++.+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 34456678999999999999998776533 3344567789999999999999999988777643 333333 4678
Q ss_pred HHhhcCCCCCCcCHHHHHHHHHHh
Q 041237 122 FRTFDKNDDGKISAEEILEMLRRL 145 (185)
Q Consensus 122 f~~~d~~~~g~i~~~ef~~~l~~~ 145 (185)
....|.||+|.|+..||.+++..-
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 888999999999999999987754
No 69
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.43 E-value=3.7e-06 Score=52.56 Aligned_cols=65 Identities=12% Similarity=0.343 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCCCCCCcCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 116 MDIQSAFRTFDKNDDGKISAEEILEMLRRL-----GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 116 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
..+-.+|..|. .+.++|+..||+.++... +..-.+..+..++...|.|+||+|+|.||+..+...
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34567888887 446799999999998753 334467889999999999999999999999887654
No 70
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.41 E-value=3.6e-07 Score=44.83 Aligned_cols=20 Identities=40% Similarity=0.815 Sum_probs=7.5
Q ss_pred HHHHhcCCCCCcccHHHHHH
Q 041237 157 MVRAVDTDGDGMVNMDEFMT 176 (185)
Q Consensus 157 ~~~~~d~~~~g~I~~~ef~~ 176 (185)
+|+.+|.|++|.|+++||..
T Consensus 5 ~F~~~D~d~dG~I~~~Ef~~ 24 (29)
T PF00036_consen 5 AFREFDKDGDGKIDFEEFKE 24 (29)
T ss_dssp HHHHHSTTSSSEEEHHHHHH
T ss_pred HHHHHCCCCCCcCCHHHHHH
Confidence 33333333333333333333
No 71
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.41 E-value=2.2e-06 Score=67.68 Aligned_cols=131 Identities=19% Similarity=0.342 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHH--HHHHHhcC------------ccChhhHHHH---HHHhcCCCCCcccHHHHHHH
Q 041237 44 RNEMKRVFDRFDSNKDGKISQMEYK--AILRAIGQ------------ASMISEVPKI---FQVVDLDGDGFIDFKEFMEA 106 (185)
Q Consensus 44 ~~~l~~~f~~~D~~~~g~l~~~e~~--~~l~~~~~------------~~~~~~~~~~---~~~~d~~~~g~i~~~ef~~~ 106 (185)
.-.+.++|-.+++.++|.|+..++. .++..+.. -.+-.....+ |..+|+|.+|.|+-+++..+
T Consensus 224 ~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry 303 (493)
T KOG2562|consen 224 ETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY 303 (493)
T ss_pred HHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH
Confidence 3557788888999999999999875 33332211 1122223334 88899999999999999764
Q ss_pred HHhCCCCCHHHHHHHHH----hhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 041237 107 HKKGGGIRTMDIQSAFR----TFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~f~----~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 176 (185)
-. +.....-+.++|. ..-..++|.|+.++|..++..+...-++..++.+|+.+|.+++|.|+..|..-
T Consensus 304 ~d--~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~ 375 (493)
T KOG2562|consen 304 GD--HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRY 375 (493)
T ss_pred hc--cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHH
Confidence 32 2233566788998 33446689999999999999998888888999999999999999999887443
No 72
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.40 E-value=6e-07 Score=44.01 Aligned_cols=29 Identities=52% Similarity=0.934 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHHHh
Q 041237 117 DIQSAFRTFDKNDDGKISAEEILEMLRRL 145 (185)
Q Consensus 117 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 145 (185)
+++.+|+.+|+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46889999999999999999999998763
No 73
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.39 E-value=1.6e-06 Score=63.16 Aligned_cols=94 Identities=22% Similarity=0.353 Sum_probs=72.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHh----CCC--C----CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHH
Q 041237 83 VPKIFQVVDLDGDGFIDFKEFMEAHKK----GGG--I----RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE 152 (185)
Q Consensus 83 ~~~~~~~~d~~~~g~i~~~ef~~~~~~----~~~--~----~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~ 152 (185)
+..+.+.+|.+++..++..+|+...-. ... . ...+.+..=..+|.+.+|.+|.+|+..+...++......
T Consensus 238 VkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~aln 317 (362)
T KOG4251|consen 238 VKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALN 317 (362)
T ss_pred HHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHH
Confidence 455677789999999999999875321 110 0 022234445567999999999999999988888877888
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHH
Q 041237 153 DCRKMVRAVDTDGDGMVNMDEFMT 176 (185)
Q Consensus 153 ~~~~~~~~~d~~~~g~I~~~ef~~ 176 (185)
++..++...|.|++.+++.++++.
T Consensus 318 e~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 318 EVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHhhhccCCCcccCHHHHHH
Confidence 899999999999999999998765
No 74
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.36 E-value=6.8e-06 Score=51.39 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-h----cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRA-I----GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 41 ~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
+..+..+..+|..+. ...+.|+..||..++.. + ........+..+++.+|.|++|.|+|+||..++..
T Consensus 4 E~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 4 EHSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 557888999999996 45779999999988855 2 23445677899999999999999999999988765
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.35 E-value=2.5e-06 Score=55.06 Aligned_cols=68 Identities=26% Similarity=0.478 Sum_probs=58.3
Q ss_pred CchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 39 TFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 39 ~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
.++.+...+..+|..+|. ++|.|+-.+...++...+ ++...+..+|...|.+++|.++++||+-+++.
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 456788999999999985 589999999999887654 78899999999999999999999999987764
No 76
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.34 E-value=4.5e-06 Score=59.06 Aligned_cols=68 Identities=28% Similarity=0.540 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 115 TMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 115 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
......+|+.||.+.+|+|+..|+..++..+|.+-+-=-+..++...|.|.+|+|++.+|+-++....
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 45677889999999999999999999999998776655578889999999999999999987776543
No 77
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.30 E-value=2e-05 Score=52.63 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=86.6
Q ss_pred hhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCC--CCCCcCHHHHHHHHHHhC---CCCCHHH
Q 041237 80 ISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKN--DDGKISAEEILEMLRRLG---ESCSLED 153 (185)
Q Consensus 80 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~--~~g~i~~~ef~~~l~~~~---~~~~~~~ 153 (185)
-.++..+|..||..++|.|++.+.-..++... .++..++..+...++.+ +--.|++++|.-++..+. ...+-++
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 36788999999999999999999999999877 66778888888888776 345799999998888763 4566778
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 154 CRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 154 ~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
.-+-++.+|..++|.|...|+.+++...
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvLttl 117 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVLTTL 117 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHHHHH
Confidence 8888999999999999999999998764
No 78
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.30 E-value=3.5e-06 Score=67.09 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcC------ccCh-----------------------------hhHHHHHHH
Q 041237 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ------ASMI-----------------------------SEVPKIFQV 89 (185)
Q Consensus 45 ~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~------~~~~-----------------------------~~~~~~~~~ 89 (185)
.-...+|..+|+.++|.+|.+++..++.+... .+.. +..++.|+.
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~ 187 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFRE 187 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999876532 1111 112333444
Q ss_pred hcCCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCC-CCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh-cCCCC
Q 041237 90 VDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKND-DGKISAEEILEMLRRLGESCSLEDCRKMVRAV-DTDGD 166 (185)
Q Consensus 90 ~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~~-~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~-d~~~~ 166 (185)
.|+.++|.|+-=+|...+.... ......++..+-...... ..+++...|..+=.-+. .-+.+++++..+ +..++
T Consensus 188 ~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~afnslL~---~melirk~y~s~~~~~~d 264 (694)
T KOG0751|consen 188 KDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAFNSLLN---NMELIRKIYSSLAGTRKD 264 (694)
T ss_pred hcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHHHHHHh---hHHHHHHHHHHhcccccc
Confidence 5555555555444444333211 222334555555553333 33677666654433222 136677777766 34566
Q ss_pred CcccHHHHHHHHHh
Q 041237 167 GMVNMDEFMTMMTR 180 (185)
Q Consensus 167 g~I~~~ef~~~l~~ 180 (185)
-.++.++|...-..
T Consensus 265 ~~~~kdq~~~~a~~ 278 (694)
T KOG0751|consen 265 VEVTKDQFSLAAQT 278 (694)
T ss_pred hhhhHHHHHHHHHH
Confidence 68899988765443
No 79
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.28 E-value=1.6e-06 Score=68.08 Aligned_cols=65 Identities=28% Similarity=0.548 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc----CccChhhHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIG----QASMISEVPKIFQVVDLDGDGFIDFKEFMEAHK 108 (185)
Q Consensus 44 ~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 108 (185)
...+..+|+.+|+|++|.|+.+||+.++..++ ...+++.+..+-+.+|-|++|.|++.||..+++
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 34455555555555555555555555444332 234444555555555555555555555555444
No 80
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.21 E-value=1.9e-06 Score=42.99 Aligned_cols=29 Identities=48% Similarity=0.836 Sum_probs=18.4
Q ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHH-HhC
Q 041237 118 IQSAFRTFDKNDDGKISAEEILEMLR-RLG 146 (185)
Q Consensus 118 ~~~~f~~~d~~~~g~i~~~ef~~~l~-~~~ 146 (185)
++.+|+.+|.+++|+|+.+||..+++ ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 45667777777777777777777666 443
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.18 E-value=8.6e-06 Score=44.92 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 133 ISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 133 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
++..|+..+++.+++.++++.+..+|...|.+++|.+..+||...+...
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 5677888888888888888888888888888888888888777766543
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.10 E-value=6.3e-06 Score=41.06 Aligned_cols=27 Identities=41% Similarity=0.672 Sum_probs=20.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 46 EMKRVFDRFDSNKDGKISQMEYKAILR 72 (185)
Q Consensus 46 ~l~~~f~~~D~~~~g~l~~~e~~~~l~ 72 (185)
+++.+|..+|.+++|+|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 356778888888888888888888776
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.10 E-value=1.1e-05 Score=63.95 Aligned_cols=58 Identities=29% Similarity=0.439 Sum_probs=50.5
Q ss_pred CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhhhc
Q 041237 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSMKL 184 (185)
Q Consensus 114 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~ 184 (185)
....++.+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+....++
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~~ 389 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAALRL 389 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHHh
Confidence 356678999999999999999999942 5778999999999999999999998876554
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.08 E-value=1.7e-05 Score=43.79 Aligned_cols=47 Identities=26% Similarity=0.249 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 62 ISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHK 108 (185)
Q Consensus 62 l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 108 (185)
++.+|+..+++.++..+.+..+..+|+..|++++|.+.-+||..+++
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 56667777777666666666677777777777777777777766655
No 85
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.03 E-value=1.7e-05 Score=60.18 Aligned_cols=100 Identities=16% Similarity=0.241 Sum_probs=83.5
Q ss_pred hhHHHHHHHhcCCCCCcccHHHHHHHHHhCC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh-CCCCCHHHHHHH
Q 041237 81 SEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG--GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL-GESCSLEDCRKM 157 (185)
Q Consensus 81 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~ 157 (185)
+.++..|..||.+++|.++|.+.+..+.-.+ ..+...++.+|++|+.+-+|.++..+|-.+|+.. |.. .=.+--+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeecccc
Confidence 5677889999999999999999988877655 5678899999999999999999999999888854 432 2235568
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 158 VRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 158 ~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
|...+...+|+|++.+|.+.+....
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCc
Confidence 8999999999999999999886544
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.01 E-value=4.1e-05 Score=60.79 Aligned_cols=58 Identities=38% Similarity=0.658 Sum_probs=51.5
Q ss_pred cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 041237 75 GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRR 144 (185)
Q Consensus 75 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 144 (185)
+.......+..+|..+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||.+++..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4566778899999999999999999999952 467999999999999999999998875
No 87
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.89 E-value=1.4e-05 Score=37.64 Aligned_cols=19 Identities=58% Similarity=0.877 Sum_probs=7.7
Q ss_pred HHHhhcCCCCCCcCHHHHH
Q 041237 121 AFRTFDKNDDGKISAEEIL 139 (185)
Q Consensus 121 ~f~~~d~~~~g~i~~~ef~ 139 (185)
+|+.+|.|++|.|+.+||.
T Consensus 4 ~F~~~D~d~DG~is~~E~~ 22 (25)
T PF13202_consen 4 AFQQFDTDGDGKISFEEFQ 22 (25)
T ss_dssp HHHHHTTTSSSEEEHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHH
Confidence 3344444444444444443
No 88
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.89 E-value=0.00016 Score=64.71 Aligned_cols=94 Identities=22% Similarity=0.376 Sum_probs=73.6
Q ss_pred hHHHHHHHhcCCCCCcccHHHHHHHHHhCC--------CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhC--CCCCH
Q 041237 82 EVPKIFQVVDLDGDGFIDFKEFMEAHKKGG--------GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG--ESCSL 151 (185)
Q Consensus 82 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--------~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~--~~~~~ 151 (185)
++..+|..||.+.+|.+++++|...++..+ +.++..++.++..+|++.+|+|+..|...++.... .-.+.
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~ 2333 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSS 2333 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccch
Confidence 456689999999999999999999888754 22345789999999999999999999999888642 22455
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHH
Q 041237 152 EDCRKMVRAVDTDGDGMVNMDEFMT 176 (185)
Q Consensus 152 ~~~~~~~~~~d~~~~g~I~~~ef~~ 176 (185)
++++..|+..+. +...|+.++...
T Consensus 2334 ~eIE~AfraL~a-~~~yvtke~~~~ 2357 (2399)
T KOG0040|consen 2334 EEIEDAFRALDA-GKPYVTKEELYQ 2357 (2399)
T ss_pred HHHHHHHHHhhc-CCccccHHHHHh
Confidence 689999999987 556676665543
No 89
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.81 E-value=0.00016 Score=46.74 Aligned_cols=62 Identities=26% Similarity=0.466 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 115 TMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 115 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
......+|..++. ++|.|+.++.+.++..-+ +..+.+..|+...|.+++|.++++||.-+|.
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4455677877774 578888888888777655 3467788888888888888888888876553
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.80 E-value=3.9e-05 Score=36.15 Aligned_cols=22 Identities=45% Similarity=0.794 Sum_probs=12.6
Q ss_pred HHHHHHhcCCCCCcccHHHHHH
Q 041237 48 KRVFDRFDSNKDGKISQMEYKA 69 (185)
Q Consensus 48 ~~~f~~~D~~~~g~l~~~e~~~ 69 (185)
+.+|..+|.|++|.|+.+||..
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 3455556666666666665554
No 91
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.80 E-value=7.1e-05 Score=46.34 Aligned_cols=66 Identities=21% Similarity=0.449 Sum_probs=52.6
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHHHhC-C-CCCHHHHHHHHHHhcCC----CCCcccHHHHHHHHHhhhh
Q 041237 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLG-E-SCSLEDCRKMVRAVDTD----GDGMVNMDEFMTMMTRSMK 183 (185)
Q Consensus 117 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~-~-~~~~~~~~~~~~~~d~~----~~g~I~~~ef~~~l~~~~~ 183 (185)
+++.+|..+.. +.+.||.++|+.+|...+ . .++.+.+..++..+.++ ..+.+++++|.++|.+..+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 46788999965 788999999999998654 3 46889999999998655 4678999999999987643
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.68 E-value=3.7e-05 Score=50.48 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHH
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 105 (185)
....+.=.|..+|.+++|.|+..|+..+...+ ...+.-+..++...|.|++|.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 44556666888888888888888877665433 35555677778888888888888888753
No 93
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00088 Score=56.51 Aligned_cols=59 Identities=27% Similarity=0.447 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178 (185)
Q Consensus 118 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 178 (185)
.+.+|..+|+..+|+||...-+.+|..-+.+ .-.+..|+...|.|+||+++-+||+-.|
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lp--q~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQSGLP--QNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHhcCCc--hhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 3568999999999999999999998876643 5568999999999999999999998665
No 94
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.56 E-value=0.00022 Score=54.35 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=87.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHh-cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHH
Q 041237 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAI-GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFR 123 (185)
Q Consensus 45 ~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~f~ 123 (185)
..+...|..+|.+++|.++..|-...+.-+ +...+...++..|+.|+.+-+|.+.-.+|.-++........-++--+|.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~ 338 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFP 338 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccch
Confidence 667888999999999999999877666555 4567788899999999999999999999988888766666667778999
Q ss_pred hhcCCCCCCcCHHHHHHHHHHhC
Q 041237 124 TFDKNDDGKISAEEILEMLRRLG 146 (185)
Q Consensus 124 ~~d~~~~g~i~~~ef~~~l~~~~ 146 (185)
..+...+|+|+.++|+++....+
T Consensus 339 ~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 339 SIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred hhhcccCcceeHHHHHHHHHhCc
Confidence 99999999999999999987654
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.35 E-value=9.5e-05 Score=48.57 Aligned_cols=62 Identities=24% Similarity=0.382 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 041237 113 IRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176 (185)
Q Consensus 113 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 176 (185)
.....+...|..+|.+++|.|+..|+..+...+ ...+.=+..++..-|.|+||.|++.||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 335567777888888888888888887765533 11222367788888888888888888764
No 96
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.24 E-value=0.0015 Score=52.86 Aligned_cols=71 Identities=23% Similarity=0.412 Sum_probs=61.5
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcC---ccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ---ASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 38 ~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
..++....++..-|...| +++|+|+..++..++...+. ....++++.+....+.+.+|.|+|++|+.++..
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 356788899999999999 99999999999999988753 335778899999999999999999999997655
No 97
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.10 E-value=0.0031 Score=51.94 Aligned_cols=139 Identities=18% Similarity=0.257 Sum_probs=89.7
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hcCccChhhHHHHHHHhcCC-----CCCcccHHHHHHHHHh--
Q 041237 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRA-IGQASMISEVPKIFQVVDLD-----GDGFIDFKEFMEAHKK-- 109 (185)
Q Consensus 38 ~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~-- 109 (185)
...+.....+..+|...|.|++|.++-.|+..+-.. ++.++....++.+-...+.. .++.++..-|..+...
T Consensus 188 elkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfi 267 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFI 267 (625)
T ss_pred cccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHH
Confidence 345667899999999999999999999999877665 35556665665554444332 2344556656543221
Q ss_pred --------------CCCC---------------------------CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCC
Q 041237 110 --------------GGGI---------------------------RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGES 148 (185)
Q Consensus 110 --------------~~~~---------------------------~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~ 148 (185)
++.. .-.-+..+|..+|.|++|.++..|+..++...+..
T Consensus 268 ergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 268 ERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred HhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 1000 01335678999999999999999999999987542
Q ss_pred -CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 149 -CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 149 -~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
++..--. +....+..|.+++..|++.+.
T Consensus 348 pW~~~~~~---~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 348 PWTSSPYK---DSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCccc---ccceecccceeehhhHHHHHH
Confidence 2211000 111133667888888877653
No 98
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.88 E-value=0.0047 Score=50.15 Aligned_cols=63 Identities=19% Similarity=0.470 Sum_probs=40.8
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCC---CHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 117 DIQSAFRTFDKNDDGKISAEEILEMLRRLGESC---SLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 117 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~---~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
++...|...| +++|+|+..++..++...+... ..++++.++...+.|.+|+|++++|...+..
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 3455666676 6677777777777766654332 3556777777777777777777777765543
No 99
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.87 E-value=0.059 Score=46.74 Aligned_cols=124 Identities=13% Similarity=0.239 Sum_probs=89.3
Q ss_pred cCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhc--CCCCC-----cccHHHHHHHHHhCCCCCHHHHHHHHHhhcC
Q 041237 55 DSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVD--LDGDG-----FIDFKEFMEAHKKGGGIRTMDIQSAFRTFDK 127 (185)
Q Consensus 55 D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d--~~~~g-----~i~~~ef~~~~~~~~~~~~~~~~~~f~~~d~ 127 (185)
-.+..|.|....+..++.. ...+..++....... .+++. -.+++.|..++...+. ..+++.+|..+..
T Consensus 158 qvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp--R~eie~iF~ki~~ 232 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP--RPEIEEIFRKISG 232 (1189)
T ss_pred cccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC--chhHHHHHHHhcc
Confidence 4566888888887766642 222344555444432 22222 3556677778777655 6789999999998
Q ss_pred CCCCCcCHHHHHHHHHHhC----------CCCCHHHHHHHHHHhcCCC----CCcccHHHHHHHHHhhhh
Q 041237 128 NDDGKISAEEILEMLRRLG----------ESCSLEDCRKMVRAVDTDG----DGMVNMDEFMTMMTRSMK 183 (185)
Q Consensus 128 ~~~g~i~~~ef~~~l~~~~----------~~~~~~~~~~~~~~~d~~~----~g~I~~~ef~~~l~~~~~ 183 (185)
++.-++|.++|..++.... ....++.+..+++.+.+|. .|+++.+.|++++....+
T Consensus 233 ~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gdEn 302 (1189)
T KOG1265|consen 233 KKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGDEN 302 (1189)
T ss_pred CCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCCcc
Confidence 8889999999999998642 3457888999999998775 688999999999877543
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.80 E-value=0.002 Score=30.26 Aligned_cols=18 Identities=61% Similarity=0.933 Sum_probs=6.7
Q ss_pred HHhhcCCCCCCcCHHHHH
Q 041237 122 FRTFDKNDDGKISAEEIL 139 (185)
Q Consensus 122 f~~~d~~~~g~i~~~ef~ 139 (185)
|..+|.+++|.|+..+|.
T Consensus 6 f~~~d~~~~g~i~~~e~~ 23 (29)
T smart00054 6 FRLFDKDGDGKIDFEEFK 23 (29)
T ss_pred HHHHCCCCCCcEeHHHHH
Confidence 333333333333333333
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.79 E-value=0.0021 Score=30.15 Aligned_cols=24 Identities=46% Similarity=0.749 Sum_probs=12.3
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHH
Q 041237 48 KRVFDRFDSNKDGKISQMEYKAIL 71 (185)
Q Consensus 48 ~~~f~~~D~~~~g~l~~~e~~~~l 71 (185)
+.+|..+|.+++|.|+..+|..++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 344555555555555555555444
No 102
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.74 E-value=0.0041 Score=38.34 Aligned_cols=62 Identities=13% Similarity=0.282 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhCC---CCCHHHHHHHHHhhcCC----CCCCcCHHHHHHHHHHh
Q 041237 83 VPKIFQVVDLDGDGFIDFKEFMEAHKKGG---GIRTMDIQSAFRTFDKN----DDGKISAEEILEMLRRL 145 (185)
Q Consensus 83 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~---~~~~~~~~~~f~~~d~~----~~g~i~~~ef~~~l~~~ 145 (185)
+..+|..+.. +.+.|+.++|..++.... ......++.++..+.++ ..+.||.++|..+|.+-
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 4556666644 456667777766666543 22456666666666443 35677777777777654
No 103
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.73 E-value=0.022 Score=49.47 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=83.2
Q ss_pred cCCCCcCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccCh-----hhHHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 33 NSSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMI-----SEVPKIFQVVDLDGDGFIDFKEFMEAH 107 (185)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~~ 107 (185)
.+.....+++...+++..|+.++....|.++..++..++..+|..... .++..+....|.+..|++++.+|...+
T Consensus 735 ~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 735 ERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 344555678889999999999999999999999999999999876553 345556667788888999999999988
Q ss_pred HhCC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHH
Q 041237 108 KKGG--GIRTMDIQSAFRTFDKNDDGKISAEEILE 140 (185)
Q Consensus 108 ~~~~--~~~~~~~~~~f~~~d~~~~g~i~~~ef~~ 140 (185)
.... .....++-..|..+-+++. +|..+|++.
T Consensus 815 ~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 815 EREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 7643 3345556667777766554 788888887
No 104
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.0087 Score=38.85 Aligned_cols=64 Identities=20% Similarity=0.413 Sum_probs=44.9
Q ss_pred CHHHHH-HHHHhhcCCCCCCcCHHHHHHHHHHh------C---CC-CCHHHHHHHH----HHhcCCCCCcccHHHHHHH
Q 041237 114 RTMDIQ-SAFRTFDKNDDGKISAEEILEMLRRL------G---ES-CSLEDCRKMV----RAVDTDGDGMVNMDEFMTM 177 (185)
Q Consensus 114 ~~~~~~-~~f~~~d~~~~g~i~~~ef~~~l~~~------~---~~-~~~~~~~~~~----~~~d~~~~g~I~~~ef~~~ 177 (185)
+.++++ --|.+.|.|+++.|+.-|+.+.+.-. | .+ .++.++..++ +.-|.|+||.|+|-||++.
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 344444 36888899999999999988887743 1 22 3444555444 4458999999999999875
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=96.62 E-value=0.03 Score=47.06 Aligned_cols=85 Identities=20% Similarity=0.368 Sum_probs=59.3
Q ss_pred CCcccHHHHHHHHHhCC---CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHHhc-------
Q 041237 95 DGFIDFKEFMEAHKKGG---GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGE--SCSLEDCRKMVRAVD------- 162 (185)
Q Consensus 95 ~g~i~~~ef~~~~~~~~---~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~~~~~~~d------- 162 (185)
.|.++|++|..+.+.+. .....++..+|..+.. +.+.|+.++|..+|...+. ..+.+.+..+++.+-
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 57899999877766542 2357788899999864 4468999999999987643 356666777765441
Q ss_pred CCCCCcccHHHHHHHHHh
Q 041237 163 TDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 163 ~~~~g~I~~~ef~~~l~~ 180 (185)
..+.+.++++.|..+|..
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 112345889999988875
No 106
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.50 E-value=0.056 Score=37.88 Aligned_cols=131 Identities=17% Similarity=0.268 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCC---CCCc-------ccHHHHHHH--------H
Q 041237 46 EMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLD---GDGF-------IDFKEFMEA--------H 107 (185)
Q Consensus 46 ~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~-------i~~~ef~~~--------~ 107 (185)
.|++=..-+|+|++|.|..-|-..=++.+|....-..+..++-...-. ..+- |-.+...+. +
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 344444567999999999999877777777654433333322111000 0010 000000000 0
Q ss_pred HhCCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCC-------CHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 041237 108 KKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESC-------SLEDCRKMVRAVDTDGDGMVNMDEFMTM 177 (185)
Q Consensus 108 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~I~~~ef~~~ 177 (185)
-.......+..+.+|..++..+.+.||..|+.++++..-... +.-|-..++... .+++|.+..+.-..+
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 012233467889999999988888999999999998742211 122233333333 677888887765544
No 107
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.32 E-value=0.041 Score=46.81 Aligned_cols=95 Identities=17% Similarity=0.356 Sum_probs=76.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 041237 83 VPKIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161 (185)
Q Consensus 83 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 161 (185)
+..+|...|++++|.+++.+-..+++... ......++.+|+..+...++.+...+++.+........ ++..+|..+
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~ 214 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQY 214 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHH
Confidence 56689999999999999999999888765 55677888999999888899999999999988876553 677777777
Q ss_pred cCCCCCcccHHHHHHHHHhh
Q 041237 162 DTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 162 d~~~~g~I~~~ef~~~l~~~ 181 (185)
-.+ .+.++..++...+...
T Consensus 215 s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 215 SHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred hCC-CCccCHHHHHHHHHHh
Confidence 433 6778877776666543
No 108
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.045 Score=35.60 Aligned_cols=57 Identities=25% Similarity=0.453 Sum_probs=39.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhc------C----ccChhhHHHHH----HHhcCCCCCcccHHHHHH
Q 041237 49 RVFDRFDSNKDGKISQMEYKAILRAIG------Q----ASMISEVPKIF----QVVDLDGDGFIDFKEFME 105 (185)
Q Consensus 49 ~~f~~~D~~~~g~l~~~e~~~~l~~~~------~----~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~ 105 (185)
..|++.|-|++|+|+--|+...+.+.- . ..++.+++.++ +--|.|++|.|+|-||.+
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 568899999999999999888776542 1 12334444443 344677788888888765
No 109
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.69 E-value=0.038 Score=42.83 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh---cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHH
Q 041237 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAI---GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQS 120 (185)
Q Consensus 44 ~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 120 (185)
-.+|+..|..+=.+.++......+...-..+ -.+.....+-.+|..+|.|.++.|+..|+..+... ..+.=++.
T Consensus 210 g~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld---knE~Cikp 286 (434)
T KOG3555|consen 210 GNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD---KNEACIKP 286 (434)
T ss_pred HHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc---CchhHHHH
Confidence 3567778888766666655555554443222 13456778889999999999999999999877655 34667889
Q ss_pred HHHhhcCCCCCCcCHHHHHHHHHHhCCC
Q 041237 121 AFRTFDKNDDGKISAEEILEMLRRLGES 148 (185)
Q Consensus 121 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~ 148 (185)
+|...|..++|.|+-.|....+...+.+
T Consensus 287 FfnsCD~~kDg~iS~~EWC~CF~k~~~p 314 (434)
T KOG3555|consen 287 FFNSCDTYKDGSISTNEWCYCFQKSDPP 314 (434)
T ss_pred HHhhhcccccCccccchhhhhhccCCCc
Confidence 9999999999999999999888766633
No 110
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.47 E-value=0.22 Score=31.17 Aligned_cols=61 Identities=11% Similarity=0.209 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcCCCCCCcCHHHHHHHHHHh-------------CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 116 MDIQSAFRTFDKNDDGKISAEEILEMLRRL-------------GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 116 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~-------------~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
+..+.+|..+ .|++|.++..-|..++++. |. .+..++..|... .....|+.++|+.++...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~--~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY--IEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT----HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC--cHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 4678899999 5889999999999988864 33 466788888886 355679999999998764
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=0.03 Score=47.75 Aligned_cols=66 Identities=24% Similarity=0.476 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHK 108 (185)
Q Consensus 41 ~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 108 (185)
+.+.-.++.+|+.+|+.-+|+|+-.+-+.+|...+ ++...+..|+..-|.|+||.++.+||+-++.
T Consensus 191 ~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 191 QHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred chhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 34667789999999999999999999999986544 6788899999999999999999999976554
No 112
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.10 E-value=0.15 Score=35.38 Aligned_cols=53 Identities=9% Similarity=0.316 Sum_probs=31.7
Q ss_pred CCCCCcCHHHHHHHHHHhCC---CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 128 NDDGKISAEEILEMLRRLGE---SCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 128 ~~~g~i~~~ef~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
.+...|+..-|.++|++.++ .++...+..+|..+-..+..+|+|++|+.+|..
T Consensus 14 ~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 14 KNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp STSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 33446777777777776542 466667777777764444456777777766654
No 113
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.04 E-value=0.13 Score=43.17 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHhc-CccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCCCcCHHHH
Q 041237 62 ISQMEYKAILRAIG-QASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEI 138 (185)
Q Consensus 62 l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef 138 (185)
++...|..++..+. ...+....+++|+..|.+++|.|+|.+++.-+.... ....+.+..+|+.+|.+++ .+..++.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44444444444432 234455578899999999999999999998877644 5557788899999999998 8888887
No 114
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.077 Score=43.18 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=51.1
Q ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 118 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
.-.-|+-+-.|-.|.|+...-++|+..-. +..+++..|++..|.++||.+++.||++++.
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 34467788889999999999999988554 4467899999999999999999999998864
No 115
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=0.096 Score=42.63 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=60.8
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 38 ~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
+.++++.+.+..-|+.+-+|..|+|+=.--+.++.. .+++-.++..||...|-+++|-|++.||+.++..
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 367888899999999999999999998888877764 4467788999999999999999999999998865
No 116
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.47 E-value=0.11 Score=40.32 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC
Q 041237 41 QADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG 111 (185)
Q Consensus 41 ~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 111 (185)
+....++-=+|+.+|.+.++.|+..|++.+-. .-.+.-+.-+|...|...+|.|+-.|+..-+....
T Consensus 246 p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 246 PICKDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred cchhhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 34567888899999999999999999997763 23456788899999999999999999988766533
No 117
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.44 E-value=0.092 Score=43.49 Aligned_cols=63 Identities=16% Similarity=0.358 Sum_probs=57.5
Q ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 118 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
.+.-|..+|.++.|.++..+..+++++.+..++++.++.+++.+|.+.+|.+.+.||.+.+..
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999999999999999999887754
No 118
>PLN02952 phosphoinositide phospholipase C
Probab=94.35 E-value=0.62 Score=39.46 Aligned_cols=86 Identities=10% Similarity=0.151 Sum_probs=62.3
Q ss_pred CCCcccHHHHHHHHHHhc--CccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCC---CCHHHHHHHHHhhc------
Q 041237 58 KDGKISQMEYKAILRAIG--QASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGG---IRTMDIQSAFRTFD------ 126 (185)
Q Consensus 58 ~~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~f~~~d------ 126 (185)
+.|.+++++|..+.+.+. ...+..++..+|..+..++ +.|+.++|..++..... ...+.++.++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 468999999987777653 2336889999999996544 78999999999987552 34555666655431
Q ss_pred -CCCCCCcCHHHHHHHHHH
Q 041237 127 -KNDDGKISAEEILEMLRR 144 (185)
Q Consensus 127 -~~~~g~i~~~ef~~~l~~ 144 (185)
..+.+.++.+.|..++.+
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 112346999999999874
No 119
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.69 E-value=0.22 Score=41.38 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=61.2
Q ss_pred CCCCcCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 34 SSLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 34 ~~~~~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
+.-+..++......+..|..+|.++.|+++..+...++...+..++.+.+..+.+..|.+.+|.++..||.+++..
T Consensus 582 ~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 582 SIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred ccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 3344566777788888888888888888888888888888777788888888888888888888888888777665
No 120
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.63 E-value=1.4 Score=31.02 Aligned_cols=34 Identities=9% Similarity=0.193 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 041237 149 CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRSM 182 (185)
Q Consensus 149 ~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 182 (185)
..++..+++|..++....+.+++.|..+++....
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 3456677777777776667777777777766543
No 121
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.24 E-value=0.078 Score=40.87 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=29.4
Q ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHhCCCCC-HHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCS-LEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 120 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~-~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
.-|..+|+++++-|...|...|=+-+..... ..=.+.+++.-|.|+|.+|++.|+...+..
T Consensus 337 w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 337 WYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4455566666665655554333222111001 122445555556666666666666655543
No 122
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.71 E-value=0.41 Score=36.79 Aligned_cols=47 Identities=26% Similarity=0.378 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHh-cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 63 SQMEYKAILRAI-GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 63 ~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
|..++..++... |..+....-...|...|-|++|.++-.|+..++..
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtk 272 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTK 272 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHH
Confidence 556666666654 44444445556677777777777777777666543
No 123
>PLN02222 phosphoinositide phospholipase C 2
Probab=92.51 E-value=0.48 Score=39.94 Aligned_cols=65 Identities=12% Similarity=0.364 Sum_probs=35.8
Q ss_pred CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHHhcC-CCCCcccHHHHHHHHHh
Q 041237 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGE--SCSLEDCRKMVRAVDT-DGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 114 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~I~~~ef~~~l~~ 180 (185)
...++..+|..+.. ++.++.++|..+|...+. ..+.+.+..+++.+.. .+.+.++++.|.++|.+
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 34466666666642 346666666666665432 2345556666665421 22345666666666654
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.04 E-value=0.3 Score=41.11 Aligned_cols=75 Identities=20% Similarity=0.361 Sum_probs=54.5
Q ss_pred ccHHHHHHHHHhCC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHH
Q 041237 98 IDFKEFMEAHKKGG--GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173 (185)
Q Consensus 98 i~~~ef~~~~~~~~--~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~e 173 (185)
+++..|...+.... .....-++++|+.+|..++|.|+..+|+..+..+...-.-+-+..+|..+|++++ ..+.++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 45555555554433 2334456889999999999999999999998877554444668888999998888 666554
No 125
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=92.03 E-value=0.34 Score=44.51 Aligned_cols=60 Identities=13% Similarity=0.379 Sum_probs=50.6
Q ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 120 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
.-|+.||+||.|.|+..+|.+.+.... .-+.+++.-++..+..+.+...+|++|..-+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 358889999999999999999988654 346778999999999999999999999876543
No 126
>PLN02228 Phosphoinositide phospholipase C
Probab=91.77 E-value=1.2 Score=37.64 Aligned_cols=65 Identities=18% Similarity=0.477 Sum_probs=30.1
Q ss_pred CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHHhcCC----CCCcccHHHHHHHHHh
Q 041237 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGE--SCSLEDCRKMVRAVDTD----GDGMVNMDEFMTMMTR 180 (185)
Q Consensus 114 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~I~~~ef~~~l~~ 180 (185)
...++..+|..+.. ++.|+.++|..++...+. ..+.+.+..+++.+... ..|.++++.|..+|.+
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 34455555555532 134555555555554321 12334455555554322 1234555555555544
No 127
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=91.48 E-value=1.5 Score=30.48 Aligned_cols=62 Identities=23% Similarity=0.435 Sum_probs=44.7
Q ss_pred HHHHHHh---cCCCCCcccHHHHHHHHHHhc---CccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 48 KRVFDRF---DSNKDGKISQMEYKAILRAIG---QASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 48 ~~~f~~~---D~~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
+.+|..| -..+...++-..|..++...+ ..++...+..+|..+-..+...|+|++|..++..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 4455555 244566789999999998754 4578888899999987666677999999888765
No 128
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.99 E-value=0.18 Score=38.94 Aligned_cols=63 Identities=24% Similarity=0.158 Sum_probs=46.8
Q ss_pred hHHHHHHHhcCCCCCcccHHHHHHH---HHhCCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh
Q 041237 82 EVPKIFQVVDLDGDGFIDFKEFMEA---HKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL 145 (185)
Q Consensus 82 ~~~~~~~~~d~~~~g~i~~~ef~~~---~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 145 (185)
.+...|..+|.|.++.|+..|+..+ +... .....=.+.+|+..|.+++..|+.+|++..+...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~-s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKK-SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhh-ccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 4667788899999999987776543 3332 2234456788889999999999999999887754
No 129
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.85 E-value=0.26 Score=43.52 Aligned_cols=139 Identities=23% Similarity=0.337 Sum_probs=106.6
Q ss_pred CCcCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhC----C
Q 041237 36 LLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKG----G 111 (185)
Q Consensus 36 ~~~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~----~ 111 (185)
....+......+..+|..+.+. +|.++-.....++.. ..++...+.+++...|.+.+|.++..+|...+..- .
T Consensus 120 ~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~--s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~ 196 (847)
T KOG0998|consen 120 VPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLN--SKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLN 196 (847)
T ss_pred CCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhc--CCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhh
Confidence 3445666778888889998665 888888888877743 45677778889999999999999999997654320 0
Q ss_pred -------------------------------------------------------------------------------C
Q 041237 112 -------------------------------------------------------------------------------G 112 (185)
Q Consensus 112 -------------------------------------------------------------------------------~ 112 (185)
.
T Consensus 197 ~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~ 276 (847)
T KOG0998|consen 197 GNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPK 276 (847)
T ss_pred cccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcc
Confidence 0
Q ss_pred C---CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 113 I---RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 113 ~---~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
. .......+|...|.+.+|.|+..+.+..+...| +....+..++...|...+|.|++.+|.-.+.
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 0 012345679999999999999999999988865 4567799999999999999999998765443
No 130
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.24 E-value=5.4 Score=35.38 Aligned_cols=77 Identities=16% Similarity=0.296 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-----------CCCHHHHHHHHHhhcCCC----
Q 041237 65 MEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-----------GIRTMDIQSAFRTFDKND---- 129 (185)
Q Consensus 65 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-----------~~~~~~~~~~f~~~d~~~---- 129 (185)
+-|..++..+. ++.+++.+|..+..+...+++.+++..++.... .....++..+...|..++
T Consensus 208 e~f~~~l~klc---pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~ 284 (1189)
T KOG1265|consen 208 EKFYRLLNKLC---PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAE 284 (1189)
T ss_pred HHHHHHHHhcC---CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhh
Confidence 33445554443 457899999999988889999999999987632 334677888899887664
Q ss_pred CCCcCHHHHHHHHHH
Q 041237 130 DGKISAEEILEMLRR 144 (185)
Q Consensus 130 ~g~i~~~ef~~~l~~ 144 (185)
.|.|+.+-|..++..
T Consensus 285 ~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 285 KGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccccchhhhHHHhhC
Confidence 789999999998875
No 131
>PLN02230 phosphoinositide phospholipase C 4
Probab=90.20 E-value=1.9 Score=36.63 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhC-C--CCCHHHHHHHHHHhcC-------CCCCcccHHHHHHHHHh
Q 041237 113 IRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG-E--SCSLEDCRKMVRAVDT-------DGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 113 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~-~--~~~~~~~~~~~~~~d~-------~~~g~I~~~ef~~~l~~ 180 (185)
....+++.+|..+..++ +.++.++|..+|...+ . ..+.+.+..++..+-. -+.+.++++.|..+|.+
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 35677888888885433 7888888888888765 2 2355666666654421 12345888888888865
No 132
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=89.45 E-value=6.1 Score=34.34 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHhcCCC-CCcccHHHHHHHHHHh--------cC----cc-ChhhHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 43 DRNEMKRVFDRFDSNK-DGKISQMEYKAILRAI--------GQ----AS-MISEVPKIFQVVDLDGDGFIDFKEFMEAHK 108 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~-~g~l~~~e~~~~l~~~--------~~----~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 108 (185)
+..-+..+|..++..+ ...+...+...++... +. +. -+-.+..+++.||+..+|.|..-+|+..+.
T Consensus 418 ~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i 497 (966)
T KOG4286|consen 418 SLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGII 497 (966)
T ss_pred cHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHH
Confidence 3456777888887664 3445555544444222 11 11 133356678999999999999999988777
Q ss_pred hCC-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH-------h-------CCCCCHHHHHHHHHHhcCCCCCcccHHH
Q 041237 109 KGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRR-------L-------GESCSLEDCRKMVRAVDTDGDGMVNMDE 173 (185)
Q Consensus 109 ~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~-------~-------~~~~~~~~~~~~~~~~d~~~~g~I~~~e 173 (185)
.++ ....+..+++|......++-++ .-.|..++.. + |.++.+ .++..|+. .++...|++..
T Consensus 498 ~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvep-svrsCF~~--v~~~pei~~~~ 573 (966)
T KOG4286|consen 498 SLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEP-SVRSCFQF--VNNKPEIEAAL 573 (966)
T ss_pred HHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCCh-HHHHHHHh--cCCCCcchHHH
Confidence 766 4456778899999976666554 4445444443 3 234444 47788884 56777899999
Q ss_pred HHHHHHh
Q 041237 174 FMTMMTR 180 (185)
Q Consensus 174 f~~~l~~ 180 (185)
|+.++.-
T Consensus 574 f~dw~~~ 580 (966)
T KOG4286|consen 574 FLDWMRL 580 (966)
T ss_pred HHHHhcc
Confidence 9988753
No 133
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=88.36 E-value=0.95 Score=41.88 Aligned_cols=57 Identities=18% Similarity=0.473 Sum_probs=45.6
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 51 FDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHK 108 (185)
Q Consensus 51 f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 108 (185)
|+.+|+|+.|.|+..+|...+..- ...+..++.-+......|.+..++|++|+.-+.
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 677899999999999999887543 235667788888888888889999999987554
No 134
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=87.84 E-value=4.7 Score=24.93 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=21.5
Q ss_pred CCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 041237 131 GKISAEEILEMLRRLGESCSLEDCRKMVRAV 161 (185)
Q Consensus 131 g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 161 (185)
..||.+||.++.+..+++++++.+..++..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~l 43 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANIL 43 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3567777777777777777777777776666
No 135
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=85.33 E-value=2.3 Score=32.83 Aligned_cols=90 Identities=18% Similarity=0.296 Sum_probs=56.1
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHH-hc----CccChhh-----------HHHHHHHhcCCCCCcccHHHHHHHHHhCCCC
Q 041237 50 VFDRFDSNKDGKISQMEYKAILRA-IG----QASMISE-----------VPKIFQVVDLDGDGFIDFKEFMEAHKKGGGI 113 (185)
Q Consensus 50 ~f~~~D~~~~g~l~~~e~~~~l~~-~~----~~~~~~~-----------~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 113 (185)
.|...|.+++|+++..|+.+++.. +. ..-.++. -+.++..+|.|.+.-|+.+||.+.-......
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef~ 328 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEFN 328 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcccC
Confidence 466778899999999999877754 21 1111111 1335778899999999999998765543321
Q ss_pred -CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh
Q 041237 114 -RTMDIQSAFRTFDKNDDGKISAEEILEMLRRL 145 (185)
Q Consensus 114 -~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 145 (185)
..+.+ .-++ -....|.+|++++=+.+
T Consensus 329 ~p~e~W----Etl~--q~~~yTeEEL~~fE~e~ 355 (442)
T KOG3866|consen 329 PPKEEW----ETLG--QKKVYTEEELQQFEREY 355 (442)
T ss_pred Ccchhh----hhhc--ccccccHHHHHHHHHHH
Confidence 22222 2332 23456777777765543
No 136
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=84.89 E-value=2.8 Score=28.54 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=34.8
Q ss_pred CcccHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC-------CCCcCHHHHHHHHHHh-CCCCCHHHHHHHHHHhc
Q 041237 96 GFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKND-------DGKISAEEILEMLRRL-GESCSLEDCRKMVRAVD 162 (185)
Q Consensus 96 g~i~~~ef~~~~~~~~~~~~~~~~~~f~~~d~~~-------~g~i~~~ef~~~l~~~-~~~~~~~~~~~~~~~~d 162 (185)
+.|+-.||.++-..... ....++.+...|..+| .+.|+++.|+.+|+.. ...+.++-++.+|..+-
T Consensus 6 ~~lsp~eF~qLq~y~ey-s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY-STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred eccCHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 45666777665332111 1224444554443222 4589999999999875 56677778888888883
No 137
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=84.68 E-value=3.6 Score=36.42 Aligned_cols=66 Identities=26% Similarity=0.272 Sum_probs=51.0
Q ss_pred HHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHH--HHHHHH---HHhcCCCCCcccHHHHHHHHHhh
Q 041237 116 MDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLE--DCRKMV---RAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 116 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~--~~~~~~---~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
.+++..|..+++...|.++.++|...+.+.|++...+ -+..+| ...|++.-|.+++.+|...|...
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 4567889999988889999999999999999887642 234444 44456666889999999888764
No 138
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=83.33 E-value=1.3 Score=26.25 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC-------CCCcccHHHHHHH
Q 041237 113 IRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTD-------GDGMVNMDEFMTM 177 (185)
Q Consensus 113 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~I~~~ef~~~ 177 (185)
.+.+++..+|+.+ .++.++||.+||++.+.. +.++.+...+-+- ..|.++|..|...
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 3467889999999 688899999999988653 3455565555321 2256788877643
No 139
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.44 E-value=2 Score=38.13 Aligned_cols=132 Identities=23% Similarity=0.349 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-----------
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG----------- 111 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~----------- 111 (185)
....+..+|..+|..+.|.|+-.+-..++..-+ +....+-.+|...|..+.|.++.++|...++...
T Consensus 9 ~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~ 86 (847)
T KOG0998|consen 9 GQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAK 86 (847)
T ss_pred ccchHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcc
Confidence 346677889999999999999999887776544 6777788889999999999999999976654300
Q ss_pred ------------------------C-----------C---CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHH
Q 041237 112 ------------------------G-----------I---RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLED 153 (185)
Q Consensus 112 ------------------------~-----------~---~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~ 153 (185)
. . .......+|+.+.. ++|+++.+..+-++..-+ +....
T Consensus 87 ~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p-~~g~~sg~~~~pil~~s~--Lp~~~ 163 (847)
T KOG0998|consen 87 KVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSP-SNGLLSGDKAKPILLNSK--LPSDV 163 (847)
T ss_pred ccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCC-CCCccccchhhhhhhcCC--CChhh
Confidence 0 0 01223456777764 488898888887776543 34556
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 154 CRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 154 ~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
+-.++...|.+.+|.++..+|.-.+.
T Consensus 164 l~~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 164 LGRIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred hccccccccccccCCCChhhhhhhhh
Confidence 77889999999999999999977664
No 140
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=80.31 E-value=4.5 Score=25.74 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCC---CCCcccHHHHHHHHH
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLD---GDGFIDFKEFMEAHK 108 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~~~ 108 (185)
.+..+...|..+.. +|+|+...|..++. ..-+.+-...+|..+..- ....|+.+|+..+|.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIG---M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIG---MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcC---CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 36677777777754 67777777776663 223333444444433211 124455555555554
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=79.55 E-value=13 Score=31.65 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAI 74 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~ 74 (185)
...++..+|..+.. ++.++.++|..++...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~ 51 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEV 51 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHh
Confidence 45555555555532 2345555555555443
No 142
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=79.15 E-value=9.8 Score=33.65 Aligned_cols=136 Identities=17% Similarity=0.178 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHH-HHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHHH---
Q 041237 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVP-KIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAF--- 122 (185)
Q Consensus 47 l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~-~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~f--- 122 (185)
++..+-..|..-...|+..++..++...+...+..... .-|.. |....+.++|++|..++...........-.-|
T Consensus 146 lrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~ 224 (1267)
T KOG1264|consen 146 LRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKD 224 (1267)
T ss_pred HHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcccch
Confidence 33444445655566799999998888776655544433 33322 33456889999998887764322121111111
Q ss_pred -HhhcCC--CCCCcCHHHHHHHHHHhCCCCCHH---HHHHHHHHhcC-----CCCCcccHHHHHHHHHhhhh
Q 041237 123 -RTFDKN--DDGKISAEEILEMLRRLGESCSLE---DCRKMVRAVDT-----DGDGMVNMDEFMTMMTRSMK 183 (185)
Q Consensus 123 -~~~d~~--~~g~i~~~ef~~~l~~~~~~~~~~---~~~~~~~~~d~-----~~~g~I~~~ef~~~l~~~~~ 183 (185)
-.-.++ .--.++..+|.++|.......... .++.+.+.+-. -....+.++||+.++-+..+
T Consensus 225 ~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSreN 296 (1267)
T KOG1264|consen 225 FILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSREN 296 (1267)
T ss_pred hhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhccc
Confidence 111111 123689999999988654322222 24444444411 12346899999999877654
No 143
>PLN02223 phosphoinositide phospholipase C
Probab=78.70 E-value=13 Score=31.25 Aligned_cols=68 Identities=9% Similarity=0.059 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHhhcCCCCCCcCHHHHHHHH---HHhC--CCCCHHHHHHHHHHhcCC--------CCCcccHHHHHHHHH
Q 041237 113 IRTMDIQSAFRTFDKNDDGKISAEEILEML---RRLG--ESCSLEDCRKMVRAVDTD--------GDGMVNMDEFMTMMT 179 (185)
Q Consensus 113 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~g~I~~~ef~~~l~ 179 (185)
...+.++.+|..+. ++.|.++.+.+.+++ ...+ ...+.++++.+++.+-.. +.+.++++.|.++|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 35678888999884 667889999999888 4332 345666777777665322 124589999999887
Q ss_pred hh
Q 041237 180 RS 181 (185)
Q Consensus 180 ~~ 181 (185)
+.
T Consensus 92 s~ 93 (537)
T PLN02223 92 ST 93 (537)
T ss_pred Cc
Confidence 64
No 144
>PLN02222 phosphoinositide phospholipase C 2
Probab=77.62 E-value=13 Score=31.77 Aligned_cols=66 Identities=11% Similarity=0.217 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcC--ccChhhHHHHHHHhcC-CCCCcccHHHHHHHHHh
Q 041237 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQ--ASMISEVPKIFQVVDL-DGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 42 ~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~ 109 (185)
....++..+|..+.. ++.++.++|..++..... ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 356688888888743 468888888888876532 2345566777766532 23456888888877754
No 145
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=76.94 E-value=21 Score=29.09 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=61.6
Q ss_pred CCCcccHHHHHHHHHHhc----CccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC---CCCHHHHHHHHHhhcCCCC
Q 041237 58 KDGKISQMEYKAILRAIG----QASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG---GIRTMDIQSAFRTFDKNDD 130 (185)
Q Consensus 58 ~~g~l~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~---~~~~~~~~~~f~~~d~~~~ 130 (185)
|+.....+||+.+....+ ..+.-+.++.+-+.+|.|.+|.|+.+|=-.+++... ...... ...|.. .+
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr-~~~fH~----dD 115 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKR-SEKFHG----DD 115 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhh-hhhccC----Cc
Confidence 455566667765554332 234445677888999999999999888666666422 222222 224544 24
Q ss_pred CCcCHHHHHHHHHHh-CCCCCHHHHHHHHHH
Q 041237 131 GKISAEEILEMLRRL-GESCSLEDCRKMVRA 160 (185)
Q Consensus 131 g~i~~~ef~~~l~~~-~~~~~~~~~~~~~~~ 160 (185)
..||.+|+...|.+- -++++.+++-.++-.
T Consensus 116 ~~ItVedLWeaW~~Sev~nWT~e~tvqWLi~ 146 (575)
T KOG4403|consen 116 KHITVEDLWEAWKESEVHNWTNERTVQWLIN 146 (575)
T ss_pred cceeHHHHHHHHHhhhhhcchHHHHHHHHHH
Confidence 579999999988854 456777766555443
No 146
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.86 E-value=1.8 Score=34.22 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCH-HHHHHHHHHhcCCCCCcccHHHHHH
Q 041237 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSL-EDCRKMVRAVDTDGDGMVNMDEFMT 176 (185)
Q Consensus 114 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~I~~~ef~~ 176 (185)
..++++++|+.+|+.+.|+|+-+-++.++...+...++ ..+..+=...|+..-|.|=..+|..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 36789999999999999999999999999998844443 3344444445665555554444443
No 147
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=75.72 E-value=2.5 Score=27.67 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 149 CSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 149 ~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
+++++++.++..+-.|..|.|.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 5678899999999999999999999998765
No 148
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=75.54 E-value=17 Score=22.76 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhc-------C----ccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIG-------Q----ASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 45 ~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~-------~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
+.++.+|..+ .|.+|.++...|..+++.+- . .-.+..++.-|... .....|+.++|...+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 5677888888 77889999998887776532 0 11233333334333 13345666666665554
No 149
>PLN02230 phosphoinositide phospholipase C 4
Probab=75.36 E-value=17 Score=31.05 Aligned_cols=31 Identities=10% Similarity=0.383 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAI 74 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~ 74 (185)
...++..+|..+.. +.+.++.++|..++...
T Consensus 27 p~~ei~~lf~~~s~-~~~~mt~~~l~~FL~~~ 57 (598)
T PLN02230 27 PVADVRDLFEKYAD-GDAHMSPEQLQKLMAEE 57 (598)
T ss_pred CcHHHHHHHHHHhC-CCCccCHHHHHHHHHHh
Confidence 55666666666632 23566666666666554
No 150
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=75.11 E-value=10 Score=20.18 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhcC--CCCCcccHHHHHHHHHH
Q 041237 42 ADRNEMKRVFDRFDS--NKDGKISQMEYKAILRA 73 (185)
Q Consensus 42 ~~~~~l~~~f~~~D~--~~~g~l~~~e~~~~l~~ 73 (185)
..+..+..+|..+.. .....|+..||..++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456778888888842 23678999999988865
No 151
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=73.15 E-value=7.9 Score=32.77 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=58.8
Q ss_pred CCCcCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCcc-ChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC--
Q 041237 35 SLLPTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQAS-MISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-- 111 (185)
Q Consensus 35 ~~~~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-- 111 (185)
+....++.-..-+..+|..+|.|++|-++..|+..++...+..+ ....... .--.+..|.++++-|...|....
T Consensus 305 ~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~---~t~~~~~G~ltl~g~l~~WsL~Tll 381 (625)
T KOG1707|consen 305 QSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKD---STVKNERGWLTLNGFLSQWSLMTLL 381 (625)
T ss_pred cceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccc---cceecccceeehhhHHHHHHHHhhc
Confidence 34456777889999999999999999999999999988764322 1000000 01122568999999988876532
Q ss_pred CCCHHHHHHHHHhhcCCC
Q 041237 112 GIRTMDIQSAFRTFDKND 129 (185)
Q Consensus 112 ~~~~~~~~~~f~~~d~~~ 129 (185)
....--...+|..|..++
T Consensus 382 d~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 382 DPRRTLEYLAYLGFPTDA 399 (625)
T ss_pred cHHHHHHHHHhcCCcccc
Confidence 111222234566665553
No 152
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=72.51 E-value=20 Score=22.17 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC
Q 041237 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG 111 (185)
Q Consensus 45 ~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 111 (185)
.+....++..-. .+-.|++.+|...++..-.-....+...+-..+|-.++++||.=||--+.+.+.
T Consensus 7 ~eA~~FW~~~Fg-~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 7 AEAAEFWKTSFG-KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp HHHHHHHHHHHT-T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred HHHHHHHHHHCC-CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 344455555422 356788888888887765444555667777778888888888777766665543
No 153
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=71.73 E-value=1.3 Score=31.93 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=23.9
Q ss_pred CCcccHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHH
Q 041237 95 DGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEM 141 (185)
Q Consensus 95 ~g~i~~~ef~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~ 141 (185)
+|++|-.|+..+ +.--...+.=+...|.-.|.+++|+|+.+|....
T Consensus 202 d~~~sh~el~pl-~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 202 DGYLSHTELAPL-RAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred cccccccccccc-cCCcccHHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 556666555432 2222233444455666666666666666665543
No 154
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=70.50 E-value=25 Score=23.56 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhcCCC--CCcccHHHHHHHHHHh
Q 041237 43 DRNEMKRVFDRFDSNK--DGKISQMEYKAILRAI 74 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~--~g~l~~~e~~~~l~~~ 74 (185)
+...+.++|....-+. +..|+..++..++..+
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~i 72 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSI 72 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHH
Confidence 5677778888775443 4678999888777654
No 155
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=70.27 E-value=20 Score=21.16 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 133 ISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178 (185)
Q Consensus 133 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 178 (185)
++-+++..++..-|..+++.++..++..-+..+-...+=..+.+.+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 4455666666666777777777777766543333333433333333
No 156
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=70.04 E-value=4.8 Score=23.85 Aligned_cols=28 Identities=7% Similarity=0.268 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAIL 71 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l 71 (185)
+.+++...|+.+ .++.++|+..+|+..+
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 467888899999 7788999999998765
No 157
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.93 E-value=15 Score=31.90 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=31.1
Q ss_pred cChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC---------CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh
Q 041237 78 SMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG---------GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL 145 (185)
Q Consensus 78 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~---------~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 145 (185)
..++.++.+|..+|. .+|.++-+++..++.... ....+....++...|.+..|.+...++..++...
T Consensus 15 ~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 15 SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQI 90 (646)
T ss_pred ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhc
Confidence 344455555555555 455555555544433210 1112223344555555555555555555554443
No 158
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=69.73 E-value=25 Score=22.13 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=49.0
Q ss_pred CCcccHHHHHHHHHHhc--CccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC--CCCHHHHHHHHHhhcCCCCCCcC
Q 041237 59 DGKISQMEYKAILRAIG--QASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG--GIRTMDIQSAFRTFDKNDDGKIS 134 (185)
Q Consensus 59 ~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--~~~~~~~~~~f~~~d~~~~g~i~ 134 (185)
+|.++..|...+-..+. ...+......+...+........++.+|...+.... .....-++.++...-. +|.++
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~~ 90 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGELD 90 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCCC
Confidence 78888888765554331 245666777777777666666678888887766532 1122334455555543 46677
Q ss_pred HHHHHHH
Q 041237 135 AEEILEM 141 (185)
Q Consensus 135 ~~ef~~~ 141 (185)
..|-.-+
T Consensus 91 ~~E~~~l 97 (104)
T cd07313 91 EYEEHLI 97 (104)
T ss_pred HHHHHHH
Confidence 7765543
No 159
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.94 E-value=5.4 Score=31.70 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccC-hhhHHHHHHHhcCCCCCcccHHHHHHH
Q 041237 43 DRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASM-ISEVPKIFQVVDLDGDGFIDFKEFMEA 106 (185)
Q Consensus 43 ~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~ 106 (185)
..++++++|..+|+.++|+|+.+-+..++..++.... ...+...-+.+|+..-|-|-..+|...
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 4688999999999999999999999999988873333 334444556677777776666665543
No 160
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=66.46 E-value=8.2 Score=17.08 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=5.9
Q ss_pred CCCCCCcCHHHHH
Q 041237 127 KNDDGKISAEEIL 139 (185)
Q Consensus 127 ~~~~g~i~~~ef~ 139 (185)
.+++|.|+.-++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 3444444444443
No 161
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=66.46 E-value=8.1 Score=22.95 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=38.9
Q ss_pred CCcccHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 041237 95 DGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRA 160 (185)
Q Consensus 95 ~g~i~~~ef~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 160 (185)
+-.++|..+...+...- .......+...|+.-+.+.|+.++|.+.++.+ +.++.+..++..
T Consensus 6 sp~~~F~~L~~~l~~~l--~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I---VGD~lL~s~I~~ 66 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHL--PPSKMDLLQKHYEEFKKKKISREEFVRKLRQI---VGDQLLRSAIKS 66 (70)
T ss_pred CCcccHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45677777777776653 34555666666655567889999999988875 113444444443
No 162
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=66.28 E-value=8.1 Score=22.95 Aligned_cols=47 Identities=11% Similarity=-0.044 Sum_probs=32.1
Q ss_pred CcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 60 GKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 60 g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
--+++..+..++. ..++...+..+...++.=..+.|+.+||+..++.
T Consensus 7 p~~~F~~L~~~l~---~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 7 PWMPFPMLFSALS---KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred CcccHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3455444444443 4456666777777777777889999999988875
No 163
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=65.59 E-value=15 Score=21.42 Aligned_cols=37 Identities=32% Similarity=0.506 Sum_probs=30.1
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCC
Q 041237 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDG 165 (185)
Q Consensus 129 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~ 165 (185)
.++.++...+...+...|+.++++.+..-+..++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567888888888888888888888888888887655
No 164
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=64.40 E-value=26 Score=22.63 Aligned_cols=70 Identities=11% Similarity=0.311 Sum_probs=48.6
Q ss_pred HHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh---C-CCCCHHHHHHHHHHhcC
Q 041237 88 QVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL---G-ESCSLEDCRKMVRAVDT 163 (185)
Q Consensus 88 ~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~---~-~~~~~~~~~~~~~~~d~ 163 (185)
+.+|+..+.+|+.++...+.+.. .-|...|.....-||..-+.+++.+. | .-++...+..+++.++.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g---------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~ 80 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREG---------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGG 80 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCC---------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCh
Confidence 35788889999999999887762 34666775544468888888877765 2 23566777788887764
Q ss_pred CCC
Q 041237 164 DGD 166 (185)
Q Consensus 164 ~~~ 166 (185)
.-.
T Consensus 81 ~~q 83 (107)
T TIGR01848 81 SMQ 83 (107)
T ss_pred hHH
Confidence 433
No 165
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.61 E-value=53 Score=24.99 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=9.5
Q ss_pred CCCCCcCHHHHHHHHHHhCC
Q 041237 128 NDDGKISAEEILEMLRRLGE 147 (185)
Q Consensus 128 ~~~g~i~~~ef~~~l~~~~~ 147 (185)
..-|..+..+|..-+..++.
T Consensus 113 ~~m~~Fsr~ef~~g~~~l~~ 132 (260)
T KOG3077|consen 113 ATMCEFSREEFLKGMTALGC 132 (260)
T ss_pred chhhhhhHHHHHHHHHHcCC
Confidence 33444555555554444443
No 166
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=60.79 E-value=17 Score=29.64 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=54.8
Q ss_pred CCCCcccHHHHHHHHHhCC-----CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHHhcCCCC
Q 041237 93 DGDGFIDFKEFMEAHKKGG-----GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRR-LGESCSLEDCRKMVRAVDTDGD 166 (185)
Q Consensus 93 ~~~g~i~~~ef~~~~~~~~-----~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~-~~~~~~~~~~~~~~~~~d~~~~ 166 (185)
.|+...+..||+......+ ....+.++.+-+.+|.|.+|.|+.+|-..|+++ +++.-...--.+ .+. ..|
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~---~fH-~dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSE---KFH-GDD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhh---hcc-CCc
Confidence 4455666677766543322 233567888999999999999999999999985 444322211111 222 255
Q ss_pred CcccHHHHHHHHHhh
Q 041237 167 GMVNMDEFMTMMTRS 181 (185)
Q Consensus 167 g~I~~~ef~~~l~~~ 181 (185)
..|+.+++...+...
T Consensus 116 ~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 116 KHITVEDLWEAWKES 130 (575)
T ss_pred cceeHHHHHHHHHhh
Confidence 678888877777654
No 167
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=60.72 E-value=38 Score=20.99 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=23.8
Q ss_pred cccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 61 KISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAH 107 (185)
Q Consensus 61 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 107 (185)
.|+..||..+....+.+.+....+.+...+-.+.-.-.+-++=..++
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~ll 60 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLL 60 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 35555555555555555555555555555544443334444433333
No 168
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=59.93 E-value=9.3 Score=25.10 Aligned_cols=31 Identities=10% Similarity=0.379 Sum_probs=22.7
Q ss_pred cChhhHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 78 SMISEVPKIFQVVDLDGDGFIDFKEFMEAHK 108 (185)
Q Consensus 78 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 108 (185)
++++.++.++..+--|..|.|.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 5788899999999999999999999987655
No 169
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=58.06 E-value=49 Score=21.50 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=35.7
Q ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 041237 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161 (185)
Q Consensus 120 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 161 (185)
-+|..+..-++-..+..++..++.+.|....++.++.++...
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 356666677777899999999999999999999999998887
No 170
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=57.65 E-value=21 Score=20.71 Aligned_cols=19 Identities=11% Similarity=0.375 Sum_probs=8.8
Q ss_pred hcCCCCCcccHHHHHHHHH
Q 041237 90 VDLDGDGFIDFKEFMEAHK 108 (185)
Q Consensus 90 ~d~~~~g~i~~~ef~~~~~ 108 (185)
+|+..+.+|+.++...+.+
T Consensus 12 YDT~~s~YiTL~di~~lV~ 30 (64)
T PF07879_consen 12 YDTETSSYITLEDIAQLVR 30 (64)
T ss_pred ccCCCceeEeHHHHHHHHH
Confidence 3444444444444444443
No 171
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=57.14 E-value=53 Score=26.05 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=62.1
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhC---------CCC--CHH
Q 041237 85 KIFQVVDLDGDGFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG---------ESC--SLE 152 (185)
Q Consensus 85 ~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~---------~~~--~~~ 152 (185)
-+...+|+.+.|.++.--....+...+ +.....++.+|.... |..|.+....+.+++++.- ... ++-
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~ 192 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTEL 192 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHH
Confidence 346678999999887666655555544 566788999999995 7789998888888888652 111 122
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 153 DCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 153 ~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
.++..|. ++.+++++.|++.+...
T Consensus 193 ~a~~cf~-----qqrKv~Ln~fldtl~sd 216 (434)
T KOG4301|consen 193 SARLCFL-----QQRKVELNQFLDTLMSD 216 (434)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHhcC
Confidence 2333332 34578888888877654
No 172
>PLN02223 phosphoinositide phospholipase C
Probab=53.88 E-value=83 Score=26.72 Aligned_cols=67 Identities=6% Similarity=-0.041 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHH---HHhc--CccChhhHHHHHHHhcCC--------CCCcccHHHHHHHHH
Q 041237 42 ADRNEMKRVFDRFDSNKDGKISQMEYKAIL---RAIG--QASMISEVPKIFQVVDLD--------GDGFIDFKEFMEAHK 108 (185)
Q Consensus 42 ~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~~~ 108 (185)
.....+..+|..+ ..+.|.++...+..++ .... ...+...++.++..+-.. ..+.++.+.|..++.
T Consensus 13 ~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 3678899999999 5678999999999888 3332 245566666666544222 226699999998876
Q ss_pred h
Q 041237 109 K 109 (185)
Q Consensus 109 ~ 109 (185)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 5
No 173
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=52.76 E-value=57 Score=21.37 Aligned_cols=51 Identities=8% Similarity=0.165 Sum_probs=39.3
Q ss_pred HHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 041237 121 AFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMT 176 (185)
Q Consensus 121 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 176 (185)
+|..+..-++..+|.+++.+++...|..+.+..+..++..+. . .+.++++.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-G----KdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-G----KTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-C----CCHHHHHH
Confidence 455555566777999999999999999999999999988883 2 35666554
No 174
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=51.13 E-value=40 Score=22.99 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=15.7
Q ss_pred CcccHHHHHHHHHH-hcCccChhhHHHHHHHhcC
Q 041237 60 GKISQMEYKAILRA-IGQASMISEVPKIFQVVDL 92 (185)
Q Consensus 60 g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~ 92 (185)
+.|+.+.|+.++.. +...++.+.+..+|..|-.
T Consensus 47 ~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 47 EPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp TEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred CCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 45666666666655 3444556666666665543
No 175
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=50.45 E-value=65 Score=20.60 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=32.7
Q ss_pred hhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhc---CCCCCCcCHHHHHHHHHHh
Q 041237 80 ISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFD---KNDDGKISAEEILEMLRRL 145 (185)
Q Consensus 80 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~f~~~d---~~~~g~i~~~ef~~~l~~~ 145 (185)
...++.-|..+.. +|.|...+|-..+.-. ...+-...+|..+- .-....|+.+|+..+|..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~--dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMK--DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCc--ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 5566666777655 6677777776654421 22333444444441 1123467777777777654
No 176
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=50.14 E-value=53 Score=26.01 Aligned_cols=43 Identities=21% Similarity=0.455 Sum_probs=29.0
Q ss_pred CCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 041237 130 DGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMM 178 (185)
Q Consensus 130 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 178 (185)
.|.||.+|-...+........++.++.+++.++ |+-+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 567777777777777544455566777777764 6777777654
No 177
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=49.57 E-value=40 Score=21.15 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=44.8
Q ss_pred CCcccHHHHHHH---HHhCCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhC-CCCCHHHHHHHHHHhcCCCCCccc
Q 041237 95 DGFIDFKEFMEA---HKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG-ESCSLEDCRKMVRAVDTDGDGMVN 170 (185)
Q Consensus 95 ~g~i~~~ef~~~---~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~I~ 170 (185)
||.++-.|-..+ +...-.....+...++..+........+..++.+.+.... .......+..++..+ ..||.++
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~ADG~~~ 90 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YADGELD 90 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCCC
Confidence 678887776543 3332244566667777777665666788888887776532 222222344445554 4456666
Q ss_pred HHH
Q 041237 171 MDE 173 (185)
Q Consensus 171 ~~e 173 (185)
-.|
T Consensus 91 ~~E 93 (104)
T cd07313 91 EYE 93 (104)
T ss_pred HHH
Confidence 554
No 178
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=49.04 E-value=45 Score=22.67 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=36.4
Q ss_pred CCCCcCHHHHHHHHHHhC---------CCCCHHHHHHHHHHhcCCCCC-cccHHHHHHHH
Q 041237 129 DDGKISAEEILEMLRRLG---------ESCSLEDCRKMVRAVDTDGDG-MVNMDEFMTMM 178 (185)
Q Consensus 129 ~~g~i~~~ef~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~I~~~ef~~~l 178 (185)
|+..||.+||.++...-. +.+.++++..+...+...+.+ .++..|-++..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~~ 139 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRAA 139 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHHh
Confidence 456789999998887542 356788888888888765555 48888876653
No 179
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=46.50 E-value=56 Score=18.69 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=25.3
Q ss_pred CCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 041237 131 GKISAEEILEMLRRLGESCSLEDCRKMVRAVD 162 (185)
Q Consensus 131 g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 162 (185)
..+|.+|+..++..++..++.+++..++...-
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 45888888888888888888888887777763
No 180
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=45.79 E-value=83 Score=20.48 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=41.2
Q ss_pred HHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 121 AFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 121 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
+|..+...++..+|.+++..++...|..+.+..+..++..+. . .+..+++..-..
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-G----Kdi~eLIa~g~~ 60 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-G----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-C----CCHHHHHHHhHh
Confidence 455555566778999999999999999999988888888873 2 356666654433
No 181
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=44.86 E-value=1.7e+02 Score=23.88 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHh
Q 041237 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRT 124 (185)
Q Consensus 45 ~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~f~~ 124 (185)
......|... -.....|.+..|+..+...-.-.+.-+...+-..+|-..+++|+.=||--+-+.+.. -..+-+-+..
T Consensus 175 adA~~FWr~~-fg~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqP--w~tllkNWq~ 251 (563)
T KOG1785|consen 175 ADAAEFWRKH-FGKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQP--WKTLLKNWQT 251 (563)
T ss_pred ccHHHHHHHh-cCCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhcc--HHHHHHhhhh
Confidence 4444445554 334667888888888876543334445555666778888888876666444333221 1122223333
Q ss_pred hcCCCCC---CcCHHHHHHHHHH
Q 041237 125 FDKNDDG---KISAEEILEMLRR 144 (185)
Q Consensus 125 ~d~~~~g---~i~~~ef~~~l~~ 144 (185)
+..-..| ++|++|...-+..
T Consensus 252 LavtHPGYmAFLTYDEVk~RLqk 274 (563)
T KOG1785|consen 252 LAVTHPGYMAFLTYDEVKARLQK 274 (563)
T ss_pred hhccCCceeEEeeHHHHHHHHHH
Confidence 3444455 4566666665553
No 182
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=44.81 E-value=60 Score=24.81 Aligned_cols=121 Identities=10% Similarity=0.084 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHhcCC--CCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHH
Q 041237 42 ADRNEMKRVFDRFDSN--KDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQ 119 (185)
Q Consensus 42 ~~~~~l~~~f~~~D~~--~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 119 (185)
.+...+..+++.+-.+ ....++.+|....-.-+..-....-+..++..+-..+--..+..+|+..+..
T Consensus 61 pTy~af~~LlDNY~~~tg~~E~~T~ee~~E~~~FLd~i~~T~vmk~~~~fL~~k~~~~~~~~~Fk~~L~~---------- 130 (265)
T PF09412_consen 61 PTYAAFIALLDNYERDTGVAEVVTPEERQEQDAFLDAIMETKVMKLAHQFLVSKGLAPSDEAEFKKQLKN---------- 130 (265)
T ss_dssp STHHHHHHHHHHTTSSSSTTT---HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTSS-SSHHHHHHHHHH----------
T ss_pred CHHHHHHHHHhccccccCCcccCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH----------
Confidence 3567788888887443 3557777765543333322233344555555554333356788899888774
Q ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHH
Q 041237 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDE 173 (185)
Q Consensus 120 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~e 173 (185)
..|..|. .+.|.++...|.+++.-.-..-...-.+.+++-+-..+.|.|+|..
T Consensus 131 iWF~~Y~-R~~~~~dSSGFEHVFvGE~k~~~V~G~HNWi~fy~~Ek~g~~dY~G 183 (265)
T PF09412_consen 131 IWFGLYS-RGSGGLDSSGFEHVFVGEIKGGEVSGFHNWIQFYLQEKSGNVDYKG 183 (265)
T ss_dssp HHTS-B--SSTTS--B-HHHHHTTS-SSTTS------HHHHHHHHHTTSEEEEE
T ss_pred hCCcccc-CCCCCCCCcccceeeeeeecCCeEeeeEHHHHHHHHHhcCCceEEE
Confidence 4666664 3445567777777765321121122344555555444555555443
No 183
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=43.18 E-value=69 Score=18.84 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHH
Q 041237 65 MEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEA 106 (185)
Q Consensus 65 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 106 (185)
+++..++...+..++..++..+++.-|..+...++-+.+..+
T Consensus 17 ~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~F 58 (68)
T PF07308_consen 17 DDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNF 58 (68)
T ss_pred HHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHH
Confidence 344444444444444444444444433333333333333333
No 184
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=42.55 E-value=82 Score=19.52 Aligned_cols=50 Identities=20% Similarity=0.127 Sum_probs=28.1
Q ss_pred CcccHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHh
Q 041237 96 GFIDFKEFMEAHKKGG-GIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRL 145 (185)
Q Consensus 96 g~i~~~ef~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 145 (185)
-.|.+.+|...+.... .....+...+=.-+|.-.+++||.-||--+.+-.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3466777777666644 2223333444455566667777777776665544
No 185
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.47 E-value=67 Score=27.97 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc--------CccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIG--------QASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 44 ~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~--------~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
...++..|..+|. .+|.++.+++..++...- .....+....++...|.+..+.+..+++..++..
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 3456666777766 677777777766654431 1223334455666777777777777777666554
No 186
>PRK00523 hypothetical protein; Provisional
Probab=42.46 E-value=75 Score=19.00 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=32.4
Q ss_pred HHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 041237 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161 (185)
Q Consensus 119 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 161 (185)
+..|..+=+ .+-.|+.+-++.++...|...++..++.+.+.+
T Consensus 27 rk~~~k~l~-~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQIR-ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHH-HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344444432 345699999999999999999999999998877
No 187
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=41.71 E-value=35 Score=20.74 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=15.9
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 041237 129 DDGKISAEEILEMLRRLGESCSLEDCRKMVRAVD 162 (185)
Q Consensus 129 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 162 (185)
..|+||++++..++... .++++.+..++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPED--DLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHH
Confidence 35667777776666532 245566666666653
No 188
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.04 E-value=62 Score=26.31 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHH
Q 041237 45 NEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFM 104 (185)
Q Consensus 45 ~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 104 (185)
....++|-.+.+ -+|+|+-..-...+ +...++...+-.+|...|.|.+|.++-+||.
T Consensus 444 ~~yde~fy~l~p-~~gk~sg~~ak~~m--v~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 444 PTYDEIFYTLSP-VNGKLSGRNAKKEM--VKSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred cchHhhhhcccc-cCceeccchhHHHH--HhccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 345556666633 36666666555444 2345666667777777777777777777774
No 189
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=40.50 E-value=76 Score=18.51 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=28.1
Q ss_pred CCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 041237 130 DGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161 (185)
Q Consensus 130 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 161 (185)
+-.|+.+-++.++...|...++..++.+.+.+
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45699999999999999999999999988776
No 190
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=40.34 E-value=1e+02 Score=20.05 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHH
Q 041237 47 MKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFME 105 (185)
Q Consensus 47 l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 105 (185)
+...|..++..++...+..++..++..+|.......++.++..+ +|. +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHH
Confidence 34556677777887889999999999999888888888888887 344 6677654
No 191
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=39.60 E-value=43 Score=23.20 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=41.9
Q ss_pred cChhhHHHHHHHhcCCC----CC-cccHHHHHHHHHhCCCC-----CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhC
Q 041237 78 SMISEVPKIFQVVDLDG----DG-FIDFKEFMEAHKKGGGI-----RTMDIQSAFRTFDKNDDGKISAEEILEMLRRLG 146 (185)
Q Consensus 78 ~~~~~~~~~~~~~d~~~----~g-~i~~~ef~~~~~~~~~~-----~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~ 146 (185)
+....++..|+.|..-+ +| .++-..|..+++..... +.-....+|..+-..+-+.|++++|...|.++.
T Consensus 9 ~~~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 9 PDMAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred cchhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 34444566666553332 22 46667777777764322 223345677777666677888888888887764
No 192
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=38.18 E-value=54 Score=18.82 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=17.8
Q ss_pred CcCHHHHHHHHHHhCCCCCHHHHHHH
Q 041237 132 KISAEEILEMLRRLGESCSLEDCRKM 157 (185)
Q Consensus 132 ~i~~~ef~~~l~~~~~~~~~~~~~~~ 157 (185)
.|+.++|...++.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47777888877777777777666554
No 193
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=36.51 E-value=1.2e+02 Score=19.83 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=37.0
Q ss_pred HHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHH
Q 041237 121 AFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175 (185)
Q Consensus 121 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~ 175 (185)
+|...-..++..+|.+++.+++...|..+.+..+..++..+. . -+..+++
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~-g----K~i~eLI 55 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK-G----KDITELI 55 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-C----CCHHHHH
Confidence 344444456667999999999999999999888888888873 2 3455554
No 194
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=35.44 E-value=80 Score=22.20 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=34.6
Q ss_pred HHHHHhCCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 041237 104 MEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161 (185)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 161 (185)
+.++....-.+..++..+++.+-..+...++..+|...|. .|+.++++++...+..+
T Consensus 73 v~~I~~gklkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 73 VKYIVDGKLKTNLQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHTTS--SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 4444443345677888888888665556799999987754 58899999988887776
No 195
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.77 E-value=2.1e+02 Score=21.89 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHh-cCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCC
Q 041237 42 ADRNEMKRVFDRF-DSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIR 114 (185)
Q Consensus 42 ~~~~~l~~~f~~~-D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 114 (185)
.+...+...|..+ |+..+..|-.+-+..+...+|..+.+-.+--+-..++...-+.++.++|..-+...+..+
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS 134 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDS 134 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCc
Confidence 4567777788776 555556888888888999999877666655566667777778999999988666544333
No 196
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.82 E-value=1.6e+02 Score=28.88 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=50.1
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCcc----ChhhHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 38 PTFQADRNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQAS----MISEVPKIFQVVDLDGDGFIDFKEFMEAHKK 109 (185)
Q Consensus 38 ~~~~~~~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 109 (185)
.......+.+..+|+.+|++..|.|...++..++..+..++ +.+. ..+--.+-...++.+++.+-..++..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 34567889999999999999999999999999998874322 1111 11222233346688999888777654
No 197
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.91 E-value=1.3e+02 Score=18.97 Aligned_cols=88 Identities=16% Similarity=0.250 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHH
Q 041237 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFR 123 (185)
Q Consensus 44 ~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~f~ 123 (185)
.+.++..|..+ ...|+..+...+...+| +++.++..+-.. .... .+....++.
T Consensus 3 ~~~l~~~f~~i----~~~V~~~~Wk~laR~LG--Lse~~I~~i~~~--------------------~~~~-~eq~~qmL~ 55 (96)
T cd08315 3 QETLRRSFDHF----IKEVPFDSWNRLMRQLG--LSENEIDVAKAN--------------------ERVT-REQLYQMLL 55 (96)
T ss_pred HhHHHHHHHHH----HHHCCHHHHHHHHHHcC--CCHHHHHHHHHH--------------------CCCC-HHHHHHHHH
Confidence 34555556655 23455556665665555 344444443222 1111 333334444
Q ss_pred hhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHH
Q 041237 124 TFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMV 158 (185)
Q Consensus 124 ~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 158 (185)
.+-...-..-|...+.+.|+.++.....+.++..+
T Consensus 56 ~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 56 TWVNKTGRKASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred HHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 44221112466788888888888777777666554
No 198
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=32.65 E-value=80 Score=22.65 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=16.1
Q ss_pred CCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 041237 127 KNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161 (185)
Q Consensus 127 ~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 161 (185)
.+.+|.+..+|+.+....-+..++.+++..++..-
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 34556666666666655555555566666665553
No 199
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=32.33 E-value=1.4e+02 Score=19.32 Aligned_cols=21 Identities=10% Similarity=0.376 Sum_probs=16.7
Q ss_pred HhcCCCCCcccHHHHHHHHHH
Q 041237 53 RFDSNKDGKISQMEYKAILRA 73 (185)
Q Consensus 53 ~~D~~~~g~l~~~e~~~~l~~ 73 (185)
.+|...+-+|+.+++..+...
T Consensus 11 LYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred ccCCCccceeeHHHHHHHHHC
Confidence 468888889999998877753
No 200
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=32.07 E-value=1.4e+02 Score=20.82 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 041237 101 KEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161 (185)
Q Consensus 101 ~ef~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 161 (185)
.||+.++.. ++-..+-.++..+|+.+|+...+..+|..--.+-+...+..|
T Consensus 65 SEfISFvT~----------EAsekC~~EkRKTIngdDllwAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 65 SEFISFVTG----------EASEKCQREKRKTINGDDLLWAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred HHHHHHHhh----------HHHHHHHHHhcCcccHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 456666553 233445456677899999999999998754444455555554
No 201
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=31.72 E-value=1.1e+02 Score=24.47 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=42.1
Q ss_pred HHHHHhhcCCCCCCcCHHHHHHHHHHh-CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 041237 119 QSAFRTFDKNDDGKISAEEILEMLRRL-GESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTRS 181 (185)
Q Consensus 119 ~~~f~~~d~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 181 (185)
......+|+.+.|.++.....-.+... |-.+ .+.++.+|... .+..|.+.+-.|.+++.+.
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~-~dklryIfs~i-sds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKI-KDKLRYIFSLI-SDSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchH-HHHHHHHHHHH-ccchHHHHHHHHHHHHHHH
Confidence 456677899999999988887776654 2222 35688899888 5677766665555555443
No 202
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=31.44 E-value=1.2e+02 Score=20.06 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh--cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCC--CCHHHHH
Q 041237 44 RNEMKRVFDRFDSNKDGKISQMEYKAILRAI--GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGG--IRTMDIQ 119 (185)
Q Consensus 44 ~~~l~~~f~~~D~~~~g~l~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~--~~~~~~~ 119 (185)
...+..+.-.+ .--+|.++..|...+...+ ....+......+...++.......++.++...+..... ....-++
T Consensus 23 ~~a~~~ll~~~-a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~ 101 (140)
T PF05099_consen 23 REALLALLAAV-AKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLR 101 (140)
T ss_dssp HHHHHHHHHHH-HHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHH
Confidence 33444444443 2248999999988776655 23345666777777776655567788888776654211 1122345
Q ss_pred HHHHhhcCCCCCCcCHHH
Q 041237 120 SAFRTFDKNDDGKISAEE 137 (185)
Q Consensus 120 ~~f~~~d~~~~g~i~~~e 137 (185)
.++.....| |.++..|
T Consensus 102 ~l~~ia~AD--G~~~~~E 117 (140)
T PF05099_consen 102 MLIAIAYAD--GEISPEE 117 (140)
T ss_dssp HHHHHCTCT--TC-SCCH
T ss_pred HHHHHHhcC--CCCCHHH
Confidence 566666555 4455444
No 203
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=31.35 E-value=1.2e+02 Score=18.34 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhcCC-CCCcccHHHHHHHH
Q 041237 135 AEEILEMLRRLGESCSLEDCRKMVRAVDTD-GDGMVNMDEFMTMM 178 (185)
Q Consensus 135 ~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~I~~~ef~~~l 178 (185)
.+++...|. |.+.+.+.+...+...+.+ --+.++.++|.+++
T Consensus 44 i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 455555553 5566677777777776543 23457777776654
No 204
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=30.95 E-value=1.7e+02 Score=24.63 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=41.5
Q ss_pred HHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh---cC----CCC-CcccHHHHHHHHHhh
Q 041237 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV---DT----DGD-GMVNMDEFMTMMTRS 181 (185)
Q Consensus 119 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~---d~----~~~-g~I~~~ef~~~l~~~ 181 (185)
..+|..+-...++.++..-|..+|++.|..-++..+..+++.+ |. +.. +.++.+-|.+++...
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sS 159 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSS 159 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccc
Confidence 4566666444458888888888888888877766776666655 21 222 257777777766543
No 205
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=29.93 E-value=1.4e+02 Score=18.58 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=11.8
Q ss_pred CCcccHHHHHHHHHHh
Q 041237 59 DGKISQMEYKAILRAI 74 (185)
Q Consensus 59 ~g~l~~~e~~~~l~~~ 74 (185)
+|.++..|...+...+
T Consensus 16 DG~v~~~E~~~i~~~l 31 (111)
T cd07176 16 DGDIDDAELQAIEALL 31 (111)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 7788888877666655
No 206
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=29.72 E-value=2.5e+02 Score=25.16 Aligned_cols=93 Identities=16% Similarity=0.255 Sum_probs=61.0
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHh-------------CC-CC
Q 041237 48 KRVFDRFDSNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKK-------------GG-GI 113 (185)
Q Consensus 48 ~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~-------------~~-~~ 113 (185)
.=.++.||...+|.|..-+|+.-+-.+......+....+|..+..+++..+ -..|--++.. ++ ..
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsN 551 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSN 551 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCC
Confidence 344688999999999999999777777766777788899999977775543 3334333322 11 23
Q ss_pred CHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 041237 114 RTMDIQSAFRTFDKNDDGKISAEEILEMLR 143 (185)
Q Consensus 114 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~ 143 (185)
-+..++.+|... .+.-.|+...|...+.
T Consensus 552 vepsvrsCF~~v--~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 552 IEPSVRSCFQFV--NNKPEIEAALFLDWMR 579 (966)
T ss_pred CChHHHHHHHhc--CCCCcchHHHHHHHhc
Confidence 355678888833 3444566655554433
No 207
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.53 E-value=1.9e+02 Score=19.57 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=9.0
Q ss_pred CcCHHHHHHHHHHhCCCCCHH
Q 041237 132 KISAEEILEMLRRLGESCSLE 152 (185)
Q Consensus 132 ~i~~~ef~~~l~~~~~~~~~~ 152 (185)
.+|.+|+...++..+..++..
T Consensus 33 h~sa~eI~~~l~~~~~~i~~a 53 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLA 53 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHH
Confidence 444444444444444333333
No 208
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=28.27 E-value=2.7e+02 Score=21.23 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=56.2
Q ss_pred CCCcccHHHHHHHHHHhc--CccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHH----HHHHHhhcCCCCC
Q 041237 58 KDGKISQMEYKAILRAIG--QASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDI----QSAFRTFDKNDDG 131 (185)
Q Consensus 58 ~~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~----~~~f~~~d~~~~g 131 (185)
-+|.|+..|.. +...+- ..++...-..+...|........++.+|+..+..........+ +.+|...-. ||
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~A--DG 144 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAFA--DG 144 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--cC
Confidence 38999999987 333331 2345555444555555555566889999988876443333333 444555544 46
Q ss_pred CcCHHHHHHHHHHh-CCCCCHHHHHHHHHH
Q 041237 132 KISAEEILEMLRRL-GESCSLEDCRKMVRA 160 (185)
Q Consensus 132 ~i~~~ef~~~l~~~-~~~~~~~~~~~~~~~ 160 (185)
.++..|-.-+.+-. ...++..+...+...
T Consensus 145 ~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 145 SLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 68877744332211 123445555555444
No 209
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=28.05 E-value=1.1e+02 Score=18.19 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=7.6
Q ss_pred CCCcCHHHHHHHHH
Q 041237 130 DGKISAEEILEMLR 143 (185)
Q Consensus 130 ~g~i~~~ef~~~l~ 143 (185)
.|++..+||..++.
T Consensus 28 ~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 28 SGKLRGEEINSLLE 41 (75)
T ss_pred cCcccHHHHHHHHH
Confidence 45555555555544
No 210
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=27.38 E-value=1.6e+02 Score=26.09 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 041237 83 VPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDDGKISAEEILEMLR 143 (185)
Q Consensus 83 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~ 143 (185)
...+|+.....+...+..++|..++. .++.+.++..++...++.|+.+.|+....
T Consensus 406 A~~iF~nv~~p~~~~i~ld~~~~f~~------~E~a~~~~slfe~~~~~~Itrs~~~~~iv 460 (714)
T KOG4629|consen 406 ARKIFKNVAKPGVILIDLDDLLRFMG------DEEAERAFSLFEGASDENITRSSFKEWIV 460 (714)
T ss_pred HHHHHhccCCCCccchhhhhhhhcCC------HHHHHHHHHhhhhhcccCccHHHHHHHHH
Confidence 45566666666666666666655544 55666666666654444577777766544
No 211
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=27.24 E-value=1.4e+02 Score=21.34 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=16.1
Q ss_pred CCCCcccHHHHHHHHHhC-CCCCHHHHHHHHHh
Q 041237 93 DGDGFIDFKEFMEAHKKG-GGIRTMDIQSAFRT 124 (185)
Q Consensus 93 ~~~g~i~~~ef~~~~~~~-~~~~~~~~~~~f~~ 124 (185)
|.+|.+..++++..+... ...+.+.++.+-..
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 456666666666655432 23344444444433
No 212
>PRK01844 hypothetical protein; Provisional
Probab=26.66 E-value=1.5e+02 Score=17.73 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=32.0
Q ss_pred HHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 041237 119 QSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161 (185)
Q Consensus 119 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 161 (185)
+..|..+=+ ++-.|+.+-++.++...|...++..++.+.+.+
T Consensus 26 rk~~~k~lk-~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNYLQ-KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHH-HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344444422 345699999999999999999999999988877
No 213
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=26.53 E-value=1.1e+02 Score=22.06 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCC
Q 041237 115 TMDIQSAFRTFDKNDDGKISAEEILEMLRRLGES 148 (185)
Q Consensus 115 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~ 148 (185)
.+..+.+|..||+++=-..+.++...++...|+-
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gII 87 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGII 87 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchh
Confidence 7778899999999888889999999998877653
No 214
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.18 E-value=1.2e+02 Score=24.85 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=39.5
Q ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHH
Q 041237 118 IQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFM 175 (185)
Q Consensus 118 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~ 175 (185)
...+|--+. .-+|+|+..--..-+.. -.+..+.+-.++..+|.++||.++-+||.
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 345666664 35777876665554443 23456789999999999999999999985
No 215
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=25.96 E-value=1.8e+02 Score=18.28 Aligned_cols=8 Identities=13% Similarity=0.389 Sum_probs=2.9
Q ss_pred CCCCcccH
Q 041237 164 DGDGMVNM 171 (185)
Q Consensus 164 ~~~g~I~~ 171 (185)
.+.++|..
T Consensus 69 ~~~~~Ip~ 76 (90)
T PF02337_consen 69 QGPEKIPI 76 (90)
T ss_dssp CSTTTS-C
T ss_pred hCCCCCCh
Confidence 33444443
No 216
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=25.73 E-value=1.7e+02 Score=26.00 Aligned_cols=59 Identities=12% Similarity=0.238 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 041237 115 TMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMTR 180 (185)
Q Consensus 115 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 180 (185)
....+.+|+..-+.+.-.+..++|..++. +++++..+..++...+..|+.+.|......
T Consensus 403 ~~aA~~iF~nv~~p~~~~i~ld~~~~f~~-------~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 403 KIAARKIFKNVAKPGVILIDLDDLLRFMG-------DEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHHHhccCCCCccchhhhhhhhcCC-------HHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 34457899999888877888887776654 578888888887666666999988877654
No 217
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=25.52 E-value=36 Score=20.62 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=20.1
Q ss_pred CCcccHHHHHHHHHHhcCccChhhHHHHHHHhc
Q 041237 59 DGKISQMEYKAILRAIGQASMISEVPKIFQVVD 91 (185)
Q Consensus 59 ~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 91 (185)
+|+=+..+|..++..+|....+..++-+.+.+.
T Consensus 38 S~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt 70 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT 70 (88)
T ss_pred cCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 444455567777776666666666666665553
No 218
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.21 E-value=1.6e+02 Score=17.52 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=31.1
Q ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 041237 120 SAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVRAV 161 (185)
Q Consensus 120 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 161 (185)
+.+..+=++ +-.|+.+-++.++...|...++..++.+++.+
T Consensus 27 k~~~k~lk~-NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 27 KQMKKQLKD-NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHHhh-CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 334444233 45699999999999999999999999888876
No 219
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=24.05 E-value=1.9e+02 Score=18.83 Aligned_cols=13 Identities=38% Similarity=0.340 Sum_probs=6.1
Q ss_pred cccHHHHHHHHHH
Q 041237 61 KISQMEYKAILRA 73 (185)
Q Consensus 61 ~l~~~e~~~~l~~ 73 (185)
+|+..|...++..
T Consensus 11 ~lt~sEa~~iL~~ 23 (112)
T PRK14981 11 YITIAEAKEILSE 23 (112)
T ss_pred cccHHHHHHHHHH
Confidence 4455554444443
No 220
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=23.51 E-value=2.3e+02 Score=18.86 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 154 CRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 154 ~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
+.-++..||+++.|.|+.-.|...+.
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 44567788999999998887766553
No 221
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=23.49 E-value=1.6e+02 Score=16.83 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.6
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHH
Q 041237 133 ISAEEILEMLRRLGESCSLEDCRKM 157 (185)
Q Consensus 133 i~~~ef~~~l~~~~~~~~~~~~~~~ 157 (185)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5588999999999999999988764
No 222
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.41 E-value=2.6e+02 Score=19.29 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=58.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHh--cCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCC-C-CCHHHHHHHHHh
Q 041237 49 RVFDRFDSNKDGKISQMEYKAILRAI--GQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGG-G-IRTMDIQSAFRT 124 (185)
Q Consensus 49 ~~f~~~D~~~~g~l~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~-~~~~~~~~~f~~ 124 (185)
-+|..+.. +|.++..|-..+...+ ....+...+..+......-+...+++-.|...++... . ...+-+..++..
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56777765 6778888865444333 2457778888888777766777788888888777422 1 112223444554
Q ss_pred hcCCCCCCcCHHHHHHHHHH
Q 041237 125 FDKNDDGKISAEEILEMLRR 144 (185)
Q Consensus 125 ~d~~~~g~i~~~ef~~~l~~ 144 (185)
.- .+|.++..|-.-+++.
T Consensus 112 a~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 112 AY--ADGELDESEDHVIWRV 129 (148)
T ss_pred HH--ccccccHHHHHHHHHH
Confidence 43 4677887776666653
No 223
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=23.08 E-value=93 Score=15.20 Aligned_cols=15 Identities=27% Similarity=0.736 Sum_probs=9.1
Q ss_pred CCcccHHHHHHHHHh
Q 041237 166 DGMVNMDEFMTMMTR 180 (185)
Q Consensus 166 ~g~I~~~ef~~~l~~ 180 (185)
.|+|+++++..+..+
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 356666666666554
No 224
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.03 E-value=1.5e+02 Score=23.45 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=24.0
Q ss_pred ccChhhHHHHHHHh------cCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 041237 77 ASMISEVPKIFQVV------DLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTF 125 (185)
Q Consensus 77 ~~~~~~~~~~~~~~------d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~f~~~ 125 (185)
..++.++..+++.+ |+|.+.----++|..+-...+....++.++.|..+
T Consensus 27 ~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 27 NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTY 81 (336)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 34555555555544 55555555555555544433334444444444443
No 225
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=23.01 E-value=1.6e+02 Score=21.15 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=20.8
Q ss_pred CCCCCcccHHHHHHHHHHhcCccChhhHHHHHHHhcC
Q 041237 56 SNKDGKISQMEYKAILRAIGQASMISEVPKIFQVVDL 92 (185)
Q Consensus 56 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 92 (185)
.+.+|+++.+++...+..-+...+.+.+..+...-++
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 4568899999988887765555666667776655443
No 226
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=22.68 E-value=2.2e+02 Score=18.33 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=33.8
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 041237 133 ISAEEILEMLRRLGESCSLEDCRKMVRAVDTDGDGMVNMDEFMTMMT 179 (185)
Q Consensus 133 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 179 (185)
+|.+++.+++...|..++++.+..++..+. ..+.++++....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHH
Confidence 999999999999999999998988888873 135666665443
No 227
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=22.45 E-value=2.7e+02 Score=19.29 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=23.0
Q ss_pred HHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 041237 121 AFRTFDKNDDGKISAEEILEMLRRLGESCSLEDCRKMVR 159 (185)
Q Consensus 121 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~ 159 (185)
+=..++++...+|..+-..+.|..+|+.--.+++..++.
T Consensus 55 Aneic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~ 93 (156)
T KOG0871|consen 55 ANEICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLE 93 (156)
T ss_pred HHHHHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 344555566667777777777777776533333433333
No 228
>COG5562 Phage envelope protein [General function prediction only]
Probab=22.39 E-value=85 Score=21.29 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=21.7
Q ss_pred hHHHHHHHhcCCCCCcccHHHHHHHHHhC
Q 041237 82 EVPKIFQVVDLDGDGFIDFKEFMEAHKKG 110 (185)
Q Consensus 82 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 110 (185)
.-..+-.....+..|..+|+||+..+...
T Consensus 73 n~~~i~~al~~~qsGqttF~ef~~~la~A 101 (137)
T COG5562 73 NTTLIKTALRRHQSGQTTFEEFCSALAEA 101 (137)
T ss_pred CHHHHHHHHHHHhcCCccHHHHHHHHHhC
Confidence 34455666777888999999999877653
No 229
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=21.90 E-value=1.4e+02 Score=15.81 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHhCCCCCHHHH
Q 041237 134 SAEEILEMLRRLGESCSLEDC 154 (185)
Q Consensus 134 ~~~ef~~~l~~~~~~~~~~~~ 154 (185)
+.+++..+.+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 788899998999998887765
No 230
>PF14178 YppF: YppF-like protein
Probab=21.87 E-value=94 Score=17.84 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=10.9
Q ss_pred CcccHHHHHHHHHhhhhcC
Q 041237 167 GMVNMDEFMTMMTRSMKLG 185 (185)
Q Consensus 167 g~I~~~ef~~~l~~~~~~~ 185 (185)
|.|+..+|...++.....|
T Consensus 35 gei~i~eYR~lvreLE~~G 53 (60)
T PF14178_consen 35 GEISINEYRNLVRELEANG 53 (60)
T ss_pred CcccHHHHHHHHHHHHHhC
Confidence 4566666666665555443
No 231
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=21.86 E-value=96 Score=15.04 Aligned_cols=11 Identities=55% Similarity=0.703 Sum_probs=5.3
Q ss_pred cCHHHHHHHHH
Q 041237 133 ISAEEILEMLR 143 (185)
Q Consensus 133 i~~~ef~~~l~ 143 (185)
||.+|++.++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666666554
No 232
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=21.70 E-value=3.3e+02 Score=20.77 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=37.0
Q ss_pred CCcccHHHHHHHHHhC---CCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCCHHHH----HHHHHHhcCCCCC
Q 041237 95 DGFIDFKEFMEAHKKG---GGIRTMDIQSAFRTFDKNDDGKISAEEILEMLRRLGESCSLEDC----RKMVRAVDTDGDG 167 (185)
Q Consensus 95 ~g~i~~~ef~~~~~~~---~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~----~~~~~~~d~~~~g 167 (185)
||.++-.|.. +.... .....+.-+.+...+...+....+..++..-+...- .-..+.+ ..++..+ -.||
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~-~~r~~l~~~lL~~l~~vA--~ADG 144 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVC-GGRFDLLRMFLEIQIQAA--FADG 144 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH--HhcC
Confidence 6778877775 22221 123344433444555444444566666666655432 1122233 3334444 3556
Q ss_pred cccHHH
Q 041237 168 MVNMDE 173 (185)
Q Consensus 168 ~I~~~e 173 (185)
.++-.|
T Consensus 145 ~l~~~E 150 (267)
T PRK09430 145 SLHPNE 150 (267)
T ss_pred CCCHHH
Confidence 676554
No 233
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=21.67 E-value=2.5e+02 Score=19.46 Aligned_cols=80 Identities=16% Similarity=0.306 Sum_probs=36.6
Q ss_pred CCcccHHHHHHHHHHhcCccChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCC--CCcCHH
Q 041237 59 DGKISQMEYKAILRAIGQASMISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGGIRTMDIQSAFRTFDKNDD--GKISAE 136 (185)
Q Consensus 59 ~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~f~~~d~~~~--g~i~~~ 136 (185)
.|.++.+||..+...+.. ....-...- |.+|.|+++.+...=+..-......++-.|+.+...++ ..++.+
T Consensus 37 K~~lgeeEfeef~~lLK~-----lt~~kLkyg--D~NGnidye~ls~~eqee~k~~~~eLqPYFdKLN~~~SsK~vlt~~ 109 (162)
T PF12207_consen 37 KGELGEEEFEEFKELLKK-----LTNAKLKYG--DKNGNIDYEKLSKEEQEEYKKLTMELQPYFDKLNGHKSSKEVLTQE 109 (162)
T ss_dssp HHCS-HHHHHHHHHHHHH-----HHHHHHHHB---TTS-B-GGGS-HHHHHHHHHHHHHHHHHHHHHTT---HHHHS-HH
T ss_pred HHhhhHHHHHHHHHHHHH-----HHHhHHhhc--ccCCCcCHHhCCHHHHHHHHHHHHhcchHHHHhcCCcchhhhcCHH
Confidence 456666766655543320 111222333 44566666655432111101113456677888865543 368888
Q ss_pred HHHHHHHHh
Q 041237 137 EILEMLRRL 145 (185)
Q Consensus 137 ef~~~l~~~ 145 (185)
|+.+.+..+
T Consensus 110 E~d~y~eAL 118 (162)
T PF12207_consen 110 EYDQYIEAL 118 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
No 234
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=21.29 E-value=2.1e+02 Score=17.39 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=36.2
Q ss_pred CCcccHHHHHHHHHHhcCcc--ChhhHHHHHHHhcCCCCCcccHHHHHHHHHhCCC--CCHHHHHHHHHhhcCCCCCCcC
Q 041237 59 DGKISQMEYKAILRAIGQAS--MISEVPKIFQVVDLDGDGFIDFKEFMEAHKKGGG--IRTMDIQSAFRTFDKNDDGKIS 134 (185)
Q Consensus 59 ~g~l~~~e~~~~l~~~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~--~~~~~~~~~f~~~d~~~~g~i~ 134 (185)
+|.|+..|...+...+.... +......+...+........+...+......... ....-++.++.... .+|.++
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~--aDG~~~ 90 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAEAGDLAALAALLKELPDAELREALLAALWEVAL--ADGELD 90 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hccCCC
Confidence 78888888776655443211 2223333332222111112344555554444321 11222334444443 356677
Q ss_pred HHHHHHH
Q 041237 135 AEEILEM 141 (185)
Q Consensus 135 ~~ef~~~ 141 (185)
..|-.-+
T Consensus 91 ~~E~~~l 97 (104)
T cd07177 91 PEERALL 97 (104)
T ss_pred HHHHHHH
Confidence 6665433
No 235
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=20.99 E-value=1.9e+02 Score=19.81 Aligned_cols=30 Identities=7% Similarity=0.206 Sum_probs=16.8
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 041237 133 ISAEEILEMLRRLGESCSLEDCRKMVRAVD 162 (185)
Q Consensus 133 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~d 162 (185)
.|.+|.+.+....+.+++++++..+++.+|
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~ 56 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIG 56 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Confidence 355555555554555556666666655554
No 236
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.20 E-value=1.3e+02 Score=14.70 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=12.0
Q ss_pred CcCHHHHHHHHHHhCCCC
Q 041237 132 KISAEEILEMLRRLGESC 149 (185)
Q Consensus 132 ~i~~~ef~~~l~~~~~~~ 149 (185)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 466777777777766543
Done!