BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041240
         (113 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P96642|YDDE_BACSU Uncharacterized protein YddE OS=Bacillus subtilis (strain 168)
           GN=yddE PE=4 SV=1
          Length = 831

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 5   YYNKKILRMLGQIFGRVFKTDYNTESASRDKFGRLAVEIDPNKPLISQFF---LDGKLQK 61
           YYN++ +R+L Q  GR+ K D+      +     ++VE+  N   I  FF    D  ++ 
Sbjct: 93  YYNEETVRLLEQRLGRLTKYDFILGVKLKSSLVNISVELKDN---ILSFFNTATDTVVKM 149

Query: 62  VEYEGLPNTSFLCGKYGHSKDICPN 86
           + +E   +TSF   KY   ++   N
Sbjct: 150 LGWEQNVSTSFF-EKYEEVEETLAN 173


>sp|O25529|HLDE_HELPY Bifunctional protein HldE OS=Helicobacter pylori (strain ATCC
           700392 / 26695) GN=hldE PE=3 SV=1
          Length = 461

 Score = 29.6 bits (65), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 75  GKYGHSKDICPNRTEEDHALGFQ 97
            KY H+  I PNRTE +HAL  +
Sbjct: 180 SKYSHASLITPNRTELEHALHLK 202


>sp|O92815|POL_WDSV Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1
           SV=2
          Length = 1752

 Score = 29.3 bits (64), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 69  NTSFLCGKYGHSKDICPNRT 88
           NT F C + GH K  CPN+T
Sbjct: 501 NTCFFCKQPGHWKADCPNKT 520


>sp|Q88937|GAG_WDSV Gag polyprotein OS=Walleye dermal sarcoma virus GN=gag PE=1 SV=1
          Length = 582

 Score = 29.3 bits (64), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 69  NTSFLCGKYGHSKDICPNRT 88
           NT F C + GH K  CPN+T
Sbjct: 501 NTCFFCKQPGHWKADCPNKT 520


>sp|A8X633|APR1_CAEBR APC-related protein 1 OS=Caenorhabditis briggsae GN=apr-1 PE=3 SV=1
          Length = 1171

 Score = 28.9 bits (63), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 68   PNTSFLCGKYGHSKDICPNRTEEDHALGFQPHLDGANESVEMNS 111
            P  S L GK  H +D+  N+T +D      P ++   E + MN+
Sbjct: 1073 PKPSLLKGKQYHEEDLIENQTRDDTIYVNAPIVEAEQERIYMNA 1116


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.138    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,962,870
Number of Sequences: 539616
Number of extensions: 1611396
Number of successful extensions: 3126
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3113
Number of HSP's gapped (non-prelim): 13
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)