BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041241
         (145 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WFY|A Chain A, Solution Structure Of The Ras-Binding Domain Of Mouse
           Rgs14
          Length = 104

 Score = 31.6 bits (70), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)

Query: 102 FIGIEHV---TSTTSISLKEALDKLFSRHGLSMSR--LHRQGYDEASNM 145
            +G+E V   ++  +  L+EAL  + ++HGLS+ +  LHR G  +  ++
Sbjct: 23  LVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDL 71


>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
          Length = 134

 Score = 28.9 bits (63), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 9/32 (28%)

Query: 95  NGYVVEHFIGIEHVTSTTSISLKEALDKLFSR 126
           NGY+V+ F         T+ +LKE LDK+F R
Sbjct: 111 NGYIVKPF---------TAATLKEKLDKIFER 133


>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
 pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
 pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
 pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
          Length = 268

 Score = 27.7 bits (60), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 71  ILIDESCDIFT--KEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHG 128
           ++  E+ DI     + +AVV   +D +       IG E V   T ++ +E LD+   RHG
Sbjct: 191 VIXREALDILGLDAKDVAVVGDQIDVD-VAAGKAIGAETVLVLTGVTTRENLDQXIERHG 249

Query: 129 L 129
           L
Sbjct: 250 L 250


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,830,365
Number of Sequences: 62578
Number of extensions: 136954
Number of successful extensions: 471
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 8
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)