BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041241
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SVZ6|ZMYM1_HUMAN Zinc finger MYM-type protein 1 OS=Homo sapiens GN=ZMYM1 PE=2 SV=1
Length = 1142
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 41 SNEIKKDIVSCAAVETTNIIIKEMGDI-LFSILIDESCDIFTKEQMAVVLRYVDKNGYVV 99
S +I+ DI+ E I+ E+ D FSI+ DE+ + KEQ+++ +RY K+ +
Sbjct: 614 STQIQSDIIEIIKTEMLQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAI 673
Query: 100 ---EHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM 145
E F+G T L + + G+ M ++H Q YD +N+
Sbjct: 674 LIKERFLGFVDTEEMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNL 722
>sp|O43422|P52K_HUMAN 52 kDa repressor of the inhibitor of the protein kinase OS=Homo
sapiens GN=PRKRIR PE=1 SV=2
Length = 761
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 50 SCAAVETTNIIIKEMGDI-LFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHV 108
SC ET ++E+ D FSI+ D+ DI +E + V++R+VD++ + E FIG
Sbjct: 244 SCIREET----LREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFIGFLPY 299
Query: 109 TSTTSISLKEALDKLFSRHGLSMSRLHRQGY 139
+ I + + + GL+M Q Y
Sbjct: 300 EADAEILAVKFHTMITEKWGLNMEYCRGQAY 330
>sp|Q9CUX1|P52K_MOUSE 52 kDa repressor of the inhibitor of the protein kinase OS=Mus
musculus GN=Prkrir PE=2 SV=2
Length = 758
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 50 SCAAVETTNIIIKEMGDI-LFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHV 108
SC ET ++E+ D FSI+ D+ DI +E + V++R+VD + E F+G
Sbjct: 240 SCIREET----LREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDDAHNLREEFVGFLPY 295
Query: 109 TSTTSISLKEALDKLFSRHGLSMSRLHRQGY 139
+ I + + + GL+M Q Y
Sbjct: 296 EADAEILAVKFHTTITEKWGLNMEYCRGQAY 326
>sp|P97492|RGS14_MOUSE Regulator of G-protein signaling 14 OS=Mus musculus GN=Rgs14 PE=1
SV=2
Length = 547
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 70 SILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHV---TSTTSISLKEALDKLFSR 126
++++D+ C + ++ +R ++ + +E +G+E V ++ + L+EAL + ++
Sbjct: 354 ALVLDQDCTVLADQE----VRLENRITFQLE-LVGLERVVRISAKPTKRLQEALQPILAK 408
Query: 127 HGLSMSR--LHRQGYDEASNM 145
HGLS+ + LHR G + ++
Sbjct: 409 HGLSLDQVVLHRPGEKQPMDL 429
>sp|O08773|RGS14_RAT Regulator of G-protein signaling 14 OS=Rattus norvegicus GN=Rgs14
PE=1 SV=1
Length = 544
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 10/74 (13%)
Query: 70 SILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHV---TSTTSISLKEALDKLFSR 126
++++D+ C + ++ +R ++ + +E +G+E V ++ + L+EAL + ++
Sbjct: 351 ALVLDQDCTVLADQE----VRLENRITFQLE-LVGLERVVRISAKPTKRLQEALQPILAK 405
Query: 127 HGLSMSR--LHRQG 138
HGLS+ + LHR G
Sbjct: 406 HGLSLDQVVLHRPG 419
>sp|Q6EKJ0|GTD2B_HUMAN General transcription factor II-I repeat domain-containing protein
2B OS=Homo sapiens GN=GTF2IRD2B PE=1 SV=1
Length = 949
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 67 ILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTS---ISLKEALDKL 123
+ +SI IDE DI Q+A+ +R VD+N V E + +T T S I L+ ++K
Sbjct: 545 VAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLR--VEKS 602
Query: 124 FSRHGLSMSRL 134
+ ++ SRL
Sbjct: 603 LKKFCINWSRL 613
>sp|A4IFA3|GT2D2_BOVIN General transcription factor II-I repeat domain-containing protein
2 OS=Bos taurus GN=GTF2IRD2 PE=2 SV=1
Length = 950
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 67 ILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTS 113
+ +SI IDE DI Q+A+ +R VD+N V E + +T T S
Sbjct: 546 VAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKS 592
>sp|B1L5H2|SPEE_KORCO Probable spermidine synthase OS=Korarchaeum cryptofilum (strain
OPF8) GN=speE PE=3 SV=1
Length = 321
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 21 HNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIF 80
H ++ +F++ L++ + +K + SC E + +I ++ D ++ ++
Sbjct: 139 HIPEVPGGSFEDP--RLKLIIGDGRKYVESCE--EKYDAVILDLTDPY-----GQAVRLY 189
Query: 81 TKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMS 132
TKE ++V + + G +V H G+ HV T + A+ + F RH ++ +
Sbjct: 190 TKEFYSMVRKLIRDGGLMVTHSEGV-HVNRVTFQRIYRAIRETFKRHAVAKA 240
>sp|Q86UP8|GTD2A_HUMAN General transcription factor II-I repeat domain-containing protein
2A OS=Homo sapiens GN=GTF2IRD2 PE=2 SV=2
Length = 949
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 67 ILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTS 113
+ +SI IDE DI Q+A+ +R VD+N V E + +T T S
Sbjct: 545 VAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKS 591
>sp|Q01886|HTS1_COCCA HC-toxin synthetase OS=Cochliobolus carbonum GN=HTS1 PE=1 SV=2
Length = 5218
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 78 DIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSR 133
+IFT+ + + +D++ +VV H + VT TS +++ + + RH +++ +
Sbjct: 4722 EIFTRPTLEAMSSLIDEHNFVVSHAGILSDVTRNTSGVMRQTTNLIAGRHSMAVEK 4777
>sp|Q4R6P1|F200A_MACFA Protein FAM200A OS=Macaca fascicularis GN=FAM200A PE=2 SV=1
Length = 573
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 37 LQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNG 96
+ ++ N I + I + A +I + I F+I +DES DI + + V +RYV ++
Sbjct: 108 IPLSDNTISRRICTIAKHLEAMLITRLQSGIDFAIQLDESTDIASCPTLLVYVRYVWQDD 167
Query: 97 YV 98
+V
Sbjct: 168 FV 169
>sp|Q8TCP9|F200A_HUMAN Protein FAM200A OS=Homo sapiens GN=FAM200A PE=2 SV=1
Length = 573
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 37 LQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNG 96
+ ++ N I + I + A +I + I F+I +DES DI + + V +RYV ++
Sbjct: 108 IPLSDNTISRRICTIAKHLEAMLITRLQSGIDFAIQLDESTDIASCPTLLVYVRYVWQDD 167
Query: 97 YV 98
+V
Sbjct: 168 FV 169
>sp|B8D1D6|GCSH_HALOH Glycine cleavage system H protein OS=Halothermothrix orenii
(strain H 168 / OCM 544 / DSM 9562) GN=gcvH PE=3 SV=1
Length = 128
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 32 NAPENLQMTSNE--IKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVL 89
N PENL T N IK D A V T+ KE+GDI+F + + E D F + + VL
Sbjct: 2 NVPENLMYTKNHEWIKVD-GDTALVGVTDYAQKELGDIVF-VELPEVSDEFAQSEGFAVL 59
Query: 90 RYV 92
V
Sbjct: 60 ESV 62
>sp|Q99NI3|GT2D2_MOUSE General transcription factor II-I repeat domain-containing protein
2 OS=Mus musculus GN=Gtf2ird2 PE=2 SV=1
Length = 936
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 67 ILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTS 113
+ +SI IDE DI Q+A+ +R VD N V E + +T S
Sbjct: 539 VAYSIAIDEITDINDTTQLAIFIRGVDDNFDVSEELLDTVPMTGAKS 585
>sp|Q9PJN7|Y791_CHLMU Uncharacterized protein TC_0791 OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=TC_0791 PE=3 SV=1
Length = 287
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 55 ETTNIIIKEMGDILFSILIDESCDIFTKE 83
E+ N ++ E D++ SIL DE IFTKE
Sbjct: 230 ESLNALVSESCDVIESILADEDTVIFTKE 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,902,658
Number of Sequences: 539616
Number of extensions: 1790429
Number of successful extensions: 5586
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5571
Number of HSP's gapped (non-prelim): 25
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)