BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041242
         (544 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
           Super-Oxide Dismutase
 pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
           Super-Oxide Dismutase
          Length = 198

 Score = 30.0 bits (66), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 197 NSLEYQFTNDPARFRFT-HQTSFVKRHSGLSR-TP-GIRWIVAFFRQFFGSVSKVDYMTM 253
           N+L    + +   F +  H   +V + +GL + TP   + +V   ++  G++        
Sbjct: 13  NALSPHISEETLNFHYNKHHAGYVNKLNGLIKDTPFATKSLVEIMKESTGAIFNNAAQIW 72

Query: 254 RHGFINAHFAPNTSFDFHKYIKRSLEDDF 282
            H F      PN   + H  IK  +++DF
Sbjct: 73  NHSFYWDSMGPNCGGEPHGEIKEKIQEDF 101


>pdb|4AGK|A Chain A, Crystal Structure Of Capsid Protein (110-267) From Aura
           Virus
          Length = 158

 Score = 29.6 bits (65), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query: 166 VLAVFHVLYSVITIALAKAKMKKWQAWELETNSLEYQFTNDPARFRFTHQTSFVKRHSGL 225
           V+   HV  ++   ALAK K  K  ++++E   L  +  +D   +   H   F   H G 
Sbjct: 30  VIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEGFYNWHHGA 89

Query: 226 SRTPGIRWIV 235
            +  G R+ +
Sbjct: 90  VQFSGGRFTI 99


>pdb|4AGJ|A Chain A, Crystal Structure Of The Capsid Protein (110-267) From
           Aura Virus In Complex With Dioxane
          Length = 158

 Score = 29.6 bits (65), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query: 166 VLAVFHVLYSVITIALAKAKMKKWQAWELETNSLEYQFTNDPARFRFTHQTSFVKRHSGL 225
           V+   HV  ++   ALAK K  K  ++++E   L  +  +D   +   H   F   H G 
Sbjct: 30  VIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEGFYNWHHGA 89

Query: 226 SRTPGIRWIV 235
            +  G R+ +
Sbjct: 90  VQFSGGRFTI 99


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,978,046
Number of Sequences: 62578
Number of extensions: 605055
Number of successful extensions: 5004
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5001
Number of HSP's gapped (non-prelim): 6
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)