Query 041242
Match_columns 544
No_of_seqs 179 out of 251
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 6E-192 1E-196 1506.4 38.3 470 14-496 1-477 (478)
2 PRK11677 hypothetical protein; 72.0 8 0.00017 36.5 5.3 44 23-70 2-45 (134)
3 PF06305 DUF1049: Protein of u 67.2 27 0.00058 28.0 6.8 47 24-70 18-64 (68)
4 COG1033 Predicted exporters of 58.1 22 0.00047 41.9 6.5 55 28-82 252-317 (727)
5 PF07219 HemY_N: HemY protein 57.2 27 0.00058 30.9 5.6 46 20-65 13-65 (108)
6 PF01578 Cytochrom_C_asm: Cyto 52.4 39 0.00084 32.7 6.3 30 58-87 116-145 (214)
7 TIGR02976 phageshock_pspB phag 44.5 71 0.0015 27.5 5.9 44 23-68 3-56 (75)
8 PF13980 UPF0370: Uncharacteri 38.4 30 0.00066 28.9 2.6 21 309-329 6-26 (63)
9 COG3105 Uncharacterized protei 37.1 70 0.0015 30.6 5.1 61 22-86 6-75 (138)
10 TIGR03144 cytochr_II_ccsB cyto 36.9 1.3E+02 0.0028 30.4 7.4 30 58-87 142-171 (243)
11 PF15031 DUF4528: Domain of un 36.0 8.8 0.00019 35.7 -0.9 51 209-277 26-81 (126)
12 PF11044 TMEMspv1-c74-12: Plec 35.6 90 0.0019 24.9 4.7 35 22-58 2-41 (49)
13 TIGR00540 hemY_coli hemY prote 31.6 88 0.0019 33.3 5.6 38 19-56 37-81 (409)
14 PRK10747 putative protoheme IX 29.5 93 0.002 33.1 5.3 38 19-56 37-81 (398)
15 PF06295 DUF1043: Protein of u 28.8 1.1E+02 0.0023 28.3 5.0 50 36-86 8-66 (128)
16 PF12801 Fer4_5: 4Fe-4S bindin 27.6 1E+02 0.0022 23.2 3.9 25 22-46 1-25 (48)
17 PF09878 DUF2105: Predicted me 27.0 60 0.0013 32.9 3.1 46 280-325 158-206 (212)
18 PF05568 ASFV_J13L: African sw 26.8 1.4E+02 0.003 29.3 5.4 46 18-65 20-65 (189)
19 TIGR03777 RPE4 Rickettsial pal 26.4 29 0.00064 25.6 0.6 9 344-352 24-32 (32)
20 TIGR00921 2A067 The (Largely A 25.3 2.6E+02 0.0056 32.0 8.2 57 25-81 620-686 (719)
21 TIGR00835 agcS amino acid carr 24.7 1.4E+02 0.003 33.2 5.7 96 248-354 13-127 (425)
22 PRK13664 hypothetical protein; 24.6 72 0.0016 26.6 2.6 21 309-329 6-27 (62)
23 PHA03105 EEV glycoprotein; Pro 24.4 71 0.0015 31.5 3.0 33 26-58 9-41 (188)
24 PF15468 DUF4636: Domain of un 22.6 51 0.0011 33.8 1.8 38 271-313 25-62 (243)
25 TIGR01106 ATPase-IIC_X-K sodiu 20.8 3.3E+02 0.007 33.3 8.2 43 348-390 809-853 (997)
26 PF14015 DUF4231: Protein of u 20.5 2.9E+02 0.0063 23.8 5.9 42 25-72 53-94 (112)
27 KOG3643 GABA receptor [Signal 20.3 78 0.0017 35.5 2.7 25 27-51 309-333 (459)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=6.2e-192 Score=1506.40 Aligned_cols=470 Identities=59% Similarity=1.056 Sum_probs=444.1
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 041242 14 GDRSLRDTPTWAVALVCAVLLILSILIEHGIHSLSKWFQKRQKKAMSEALEKIKAELMLLGFLSLLLTVGTRFIYKICIP 93 (544)
Q Consensus 14 ~~rsLe~TPTWaVA~Vc~v~v~iSi~~Er~lH~lgk~lkkk~kkaL~eALeKiK~ELMLLGFISLLLtv~q~~IskICIp 93 (544)
|+|+||+|||||||+||+|||+||+++||+||+|||||+|++||+|+|||||||+|||||||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCCCCCCCCchhhhhhhhccCCcchhhhhcCC-CCCCCccccCCceeeecccchhHHHHHHHHHHHHHH
Q 041242 94 AEYGNTMLPCKIENDTGGDDDDHRRKLLLYSGDVMWRRVLAAP-AGGDDYCSRKGQVSLISLTGLHQLHIFIFVLAVFHV 172 (544)
Q Consensus 94 ~~~~~~~lPC~~~~~~~~~~~~~~~~ll~~~~~~~~RR~La~~-~~~~~~C~~kGkvpliS~~~lHQLHIFIFvLAv~HV 172 (544)
++++++|+||+..++.++.+ ++..+||+|+.. ++++++|++||||||+|.|||||||||||||||+||
T Consensus 81 ~~~~~~~lPC~~~~~~~~~~-----------~~~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV~HV 149 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESSKEG-----------SSHNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVLAVVHV 149 (478)
T ss_pred hhHHhcccCCCCcccccccc-----------cchhhhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHHHHHHH
Confidence 99999999999655443221 112568888742 234679998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhcccccccCCCCceeeeeecccceeccC-CCCCCchHHHHHHHhhhcCCCchhhHH
Q 041242 173 LYSVITIALAKAKMKKWQAWELETNSLEYQFTNDPARFRFTHQTSFVKRHSG-LSRTPGIRWIVAFFRQFFGSVSKVDYM 251 (544)
Q Consensus 173 ~ys~~Tm~Lg~~Kir~Wk~WE~e~~~~~~~~~~dp~r~r~~~qtsF~r~H~~-ws~~~~l~wi~cFfrQF~~SV~k~DYl 251 (544)
+|||+||+||++|||+||+||+|+++.+|+..+||+|+|++|||+|+|+|++ |++++++.|++|||||||+||+|+||+
T Consensus 150 ~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~~~~~~wi~~FfrQF~~SV~k~DYl 229 (478)
T PF03094_consen 150 LYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSKSPVLSWIVCFFRQFYGSVTKSDYL 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCCcccChhHHhHHHHHHHhhccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHhHhhhhcCCCCCCcHHHHHHHHHhhccccccccchhHHHHHHHhhhhcccchhHHHHH-----HHHHHHhhhHHHH
Q 041242 252 TMRHGFINAHFAPNTSFDFHKYIKRSLEDDFKVVVGISIPLWIVAVIFLLVNVYKWDSLSWL-----TIILLVGTKLELV 326 (544)
Q Consensus 252 tLR~GFI~~H~~~~~kFDFhkYi~RsLEdDFk~VVGIS~~lW~~vviFlLlnv~Gw~~yfWl-----illLlVGtKLq~I 326 (544)
|||+|||++|++|+++|||||||+||||||||+||||||+||+|||+|||+|++|||+|||+ +++|+||||||+|
T Consensus 230 tLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~VGtKLq~I 309 (478)
T PF03094_consen 230 TLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLVGTKLQHI 309 (478)
T ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHhhhcccccCCccccCCCcccccCCchHHHHHHHHHhhhhhhHHHHHHHHHhhcCcccccccCccceeeeeee
Q 041242 327 IMEMAQEIQDRTTVVRGAPVVEPNNKFFWFNRPEWILFLIHYTLFQNAFQMAFFLWIVYEFGIHSCFHENLPLILTRVIV 406 (544)
Q Consensus 327 It~malei~e~~~~v~G~p~V~psD~~FWF~rP~llL~LIHfiLFQNAFelAfF~W~~~~fG~~SCf~~~~~~ii~Rl~~ 406 (544)
|++||+||+|++++++|+|+|||+|++|||+||+|||+||||||||||||||||+|+||+||++||||++.+++++|+++
T Consensus 310 i~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~~i~rl~~ 389 (478)
T PF03094_consen 310 ITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEYIIIRLVM 389 (478)
T ss_pred HHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCccceeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccchhHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHhhhccCcccCCCCccCCCCCCCCCCCCCCCcc
Q 041242 407 GVALQFLCSYITFPLYALVTQMGSHMKKSIFEEQTAKALKKWQKAAKERRRSRNKAAAGADKCSGFLSGENTPSQGASPI 486 (544)
Q Consensus 407 Gv~vQ~LCSY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W~~~akkk~~~~~~~~~~~~~~~~~~~~~~tps~~~s~~ 486 (544)
||++|++|||+|||||||||||||+||++||+|+|+++|++||++||||+++++++.+ +..++..++++||++++||+
T Consensus 390 gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~~~~~--~~~~~~~~~~~~~~~~~S~~ 467 (478)
T PF03094_consen 390 GVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKKSAHS--GSTTPGSSRSTTPSRGSSPV 467 (478)
T ss_pred hhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCCCCCC--CCCCCCCCCCCCCCCCCCch
Confidence 9999999999999999999999999999999999999999999999999988764322 23455545556899999999
Q ss_pred cccccCCCCC
Q 041242 487 HLLHHYKYRS 496 (544)
Q Consensus 487 h~l~~~~~~~ 496 (544)
|+||+++++.
T Consensus 468 ~ll~~~~~~~ 477 (478)
T PF03094_consen 468 HLLHRFKTRS 477 (478)
T ss_pred hhhccCCCCC
Confidence 9999999887
No 2
>PRK11677 hypothetical protein; Provisional
Probab=71.97 E-value=8 Score=36.47 Aligned_cols=44 Identities=39% Similarity=0.504 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhchhHHHHHHHHHHHHH
Q 041242 23 TWAVALVCAVLLILSILIEHGIHSLSKWFQKRQKKAMSEALEKIKAEL 70 (544)
Q Consensus 23 TWaVA~Vc~v~v~iSi~~Er~lH~lgk~lkkk~kkaL~eALeKiK~EL 70 (544)
+|..|++++|+ .+++=.++.+++.. +.++++.|-+-||+.|.||
T Consensus 2 ~W~~a~i~liv---G~iiG~~~~R~~~~-~~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 2 TWEYALIGLVV---GIIIGAVAMRFGNR-KLRQQQALQYELEKNKAEL 45 (134)
T ss_pred cHHHHHHHHHH---HHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHH
Confidence 49888876654 44444455555442 1146788999999999998
No 3
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.17 E-value=27 Score=27.96 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhchhHHHHHHHHHHHHH
Q 041242 24 WAVALVCAVLLILSILIEHGIHSLSKWFQKRQKKAMSEALEKIKAEL 70 (544)
Q Consensus 24 WaVA~Vc~v~v~iSi~~Er~lH~lgk~lkkk~kkaL~eALeKiK~EL 70 (544)
+-++++.++..++++++=-++.....+=.|++.+.+-+.+++.+.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777778777777777777767777788999999999886
No 4
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=58.14 E-value=22 Score=41.86 Aligned_cols=55 Identities=29% Similarity=0.474 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhch-----hHHHHHHHHHHHHHH------HHHHHHHHHHh
Q 041242 28 LVCAVLLILSILIEHGIHSLSKWFQKRQK-----KAMSEALEKIKAELM------LLGFLSLLLTV 82 (544)
Q Consensus 28 ~Vc~v~v~iSi~~Er~lH~lgk~lkkk~k-----kaL~eALeKiK~ELM------LLGFISLLLtv 82 (544)
....+.++|++.+++++|..-++.+.+++ .|+.||+.|+.-=++ -+||+||+.+-
T Consensus 252 s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~ 317 (727)
T COG1033 252 TSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSS 317 (727)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcc
Confidence 44566778899999999999999887766 477888887776554 48999998753
No 5
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=57.16 E-value=27 Score=30.93 Aligned_cols=46 Identities=17% Similarity=0.527 Sum_probs=35.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHhhchhHHHHHHHH
Q 041242 20 DTPTWAVALVCAVLLILSILIEHGIHS-------LSKWFQKRQKKAMSEALEK 65 (544)
Q Consensus 20 ~TPTWaVA~Vc~v~v~iSi~~Er~lH~-------lgk~lkkk~kkaL~eALeK 65 (544)
||.-|...+++.+++++-.++.+++-. +.+|+++++++.-.+||++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 567787778888788888788887765 5778888888877777764
No 6
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=52.42 E-value=39 Score=32.74 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 041242 58 AMSEALEKIKAELMLLGFLSLLLTVGTRFI 87 (544)
Q Consensus 58 aL~eALeKiK~ELMLLGFISLLLtv~q~~I 87 (544)
+-.+.||++-.-++..||+-|.++..-+.+
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 345888999999999999999998877764
No 7
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=44.54 E-value=71 Score=27.50 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhch----------hHHHHHHHHHHH
Q 041242 23 TWAVALVCAVLLILSILIEHGIHSLSKWFQKRQK----------KAMSEALEKIKA 68 (544)
Q Consensus 23 TWaVA~Vc~v~v~iSi~~Er~lH~lgk~lkkk~k----------kaL~eALeKiK~ 68 (544)
.|.+++-..+|+++-..+.-.+||..|| +..+ ..|++-.+|+.+
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~--~~~~~ls~~d~~~L~~L~~~a~rm~e 56 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR--KTAASLSTDDQALLQELYAKADRLEE 56 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3667777778888888899999999883 3333 445555555554
No 8
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=38.35 E-value=30 Score=28.85 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 041242 309 SLSWLTIILLVGTKLELVIME 329 (544)
Q Consensus 309 ~yfWlillLlVGtKLq~IIt~ 329 (544)
-|.|+|+|++||--+..|=.-
T Consensus 6 dYWWiiLl~lvG~i~n~iK~L 26 (63)
T PF13980_consen 6 DYWWIILLILVGMIINGIKEL 26 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999876665443
No 9
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.10 E-value=70 Score=30.55 Aligned_cols=61 Identities=31% Similarity=0.433 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhchhHHHHHHHHHHHHHH---------HHHHHHHHHHhhhcc
Q 041242 22 PTWAVALVCAVLLILSILIEHGIHSLSKWFQKRQKKAMSEALEKIKAELM---------LLGFLSLLLTVGTRF 86 (544)
Q Consensus 22 PTWaVA~Vc~v~v~iSi~~Er~lH~lgk~lkkk~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 86 (544)
-+|..|.+-+| ++++|-.++-+|++- +-|+++.+-.-|||+|.+|= .----+||=|..|+|
T Consensus 6 ~~W~~a~igLv---vGi~IG~li~Rlt~~-~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 6 MTWEYALIGLV---VGIIIGALIARLTNR-KLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888776544 444555555555552 23355678888999998763 223457888888877
No 10
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=36.86 E-value=1.3e+02 Score=30.37 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 041242 58 AMSEALEKIKAELMLLGFLSLLLTVGTRFI 87 (544)
Q Consensus 58 aL~eALeKiK~ELMLLGFISLLLtv~q~~I 87 (544)
+=.+.|||+--.+...||+-|.++...+.|
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~i 171 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGAV 171 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999887763
No 11
>PF15031 DUF4528: Domain of unknown function (DUF4528)
Probab=36.04 E-value=8.8 Score=35.73 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=37.9
Q ss_pred ceeeeeecccceeccCCCCCCchHHHHHHHhhhcCCCchhhHHHHHHh---HhhhhcCCCC--CCcHHHHHHHH
Q 041242 209 RFRFTHQTSFVKRHSGLSRTPGIRWIVAFFRQFFGSVSKVDYMTMRHG---FINAHFAPNT--SFDFHKYIKRS 277 (544)
Q Consensus 209 r~r~~~qtsF~r~H~~ws~~~~l~wi~cFfrQF~~SV~k~DYltLR~G---FI~~H~~~~~--kFDFhkYi~Rs 277 (544)
|++-.+...|++.|.+|. |..+.|.-||-| ||.-||...| +.++++-.-|.
T Consensus 26 ky~~V~nDqfG~ShFNW~------------------v~g~NYhILRTGCfPfiKYHCtkrp~qdL~~ed~ff~~ 81 (126)
T PF15031_consen 26 KYSDVRNDQFGLSHFNWT------------------VDGSNYHILRTGCFPFIKYHCTKRPPQDLSFEDRFFTA 81 (126)
T ss_pred EhhhcccccccccccCcc------------------cCCceEEEEeecCccceeeeecCCChhhcchHHHHHHH
Confidence 455566778899998886 888999999998 9999998766 44454444333
No 12
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=35.64 E-value=90 Score=24.88 Aligned_cols=35 Identities=23% Similarity=0.551 Sum_probs=16.8
Q ss_pred CchHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHhhchhH
Q 041242 22 PTWAVAL-----VCAVLLILSILIEHGIHSLSKWFQKRQKKA 58 (544)
Q Consensus 22 PTWaVA~-----Vc~v~v~iSi~~Er~lH~lgk~lkkk~kka 58 (544)
|||.--. +..+|.-+.+.+=.-+..+.. |||.||.
T Consensus 2 p~wlt~iFsvvIil~If~~iGl~IyQkikqIrg--Kkk~KKe 41 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAWIGLSIYQKIKQIRG--KKKEKKE 41 (49)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHH
Confidence 7885322 223333345555555555554 4444443
No 13
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=31.61 E-value=88 Score=33.31 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=25.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHhhch
Q 041242 19 RDTPTWAVALVCAVLLILSILIEHGIH-------SLSKWFQKRQK 56 (544)
Q Consensus 19 e~TPTWaVA~Vc~v~v~iSi~~Er~lH-------~lgk~lkkk~k 56 (544)
-+|+-|+..++..+++++.+++++++. .+..|+.+||+
T Consensus 37 ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~ 81 (409)
T TIGR00540 37 IEMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKR 81 (409)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 356667666666666666667888885 45568777554
No 14
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=29.46 E-value=93 Score=33.13 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=28.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHhhch
Q 041242 19 RDTPTWAVALVCAVLLILSILIEHGIHS-------LSKWFQKRQK 56 (544)
Q Consensus 19 e~TPTWaVA~Vc~v~v~iSi~~Er~lH~-------lgk~lkkk~k 56 (544)
-+|+=|..++++.+++++.+++++++.. +..|+.+||+
T Consensus 37 ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 37 IETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 4677788888888888888888888854 4578777555
No 15
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.77 E-value=1.1e+02 Score=28.34 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhHHHhhchhHHHHHHHHHHHHHH---------HHHHHHHHHHhhhcc
Q 041242 36 LSILIEHGIHSLSKWFQKRQKKAMSEALEKIKAELM---------LLGFLSLLLTVGTRF 86 (544)
Q Consensus 36 iSi~~Er~lH~lgk~lkkk~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 86 (544)
|.+++=.++.++.+-= .++++.|-+.|++.|+||= +-.-.-||=...++|
T Consensus 8 vG~iiG~~~~r~~~~~-~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 8 VGLIIGFLIGRLTSSN-QQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554421 1345789999999999883 555555776666654
No 16
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=27.59 E-value=1e+02 Score=23.15 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=17.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 041242 22 PTWAVALVCAVLLILSILIEHGIHS 46 (544)
Q Consensus 22 PTWaVA~Vc~v~v~iSi~~Er~lH~ 46 (544)
|.|...+...++++++++..|.-..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 1 MAWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3455566666888999999885443
No 17
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=27.01 E-value=60 Score=32.89 Aligned_cols=46 Identities=30% Similarity=0.494 Sum_probs=25.2
Q ss_pred hccccccccchhHHHHHHHhhhhcccchhHHHHH---HHHHHHhhhHHH
Q 041242 280 DDFKVVVGISIPLWIVAVIFLLVNVYKWDSLSWL---TIILLVGTKLEL 325 (544)
Q Consensus 280 dDFk~VVGIS~~lW~~vviFlLlnv~Gw~~yfWl---illLlVGtKLq~ 325 (544)
|-...+-||.|.+|++.-+..++.-.-|-...-+ -+++=||+|+-.
T Consensus 158 egi~~~SGiaWalWi~gF~~Ff~~P~~Wl~~L~lAg~gl~iKV~sKlgL 206 (212)
T PF09878_consen 158 EGIEGVSGIAWALWIAGFIGFFLFPQYWLLALMLAGCGLLIKVGSKLGL 206 (212)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhcchhhhhhhhhhh
Confidence 3455677889999987654444432223222111 355556676654
No 18
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=26.83 E-value=1.4e+02 Score=29.26 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=31.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhchhHHHHHHHH
Q 041242 18 LRDTPTWAVALVCAVLLILSILIEHGIHSLSKWFQKRQKKAMSEALEK 65 (544)
Q Consensus 18 Le~TPTWaVA~Vc~v~v~iSi~~Er~lH~lgk~lkkk~kkaL~eALeK 65 (544)
---+|..--.-.|++++.|-+++--+ -.|--|+.+||||+. .|+||
T Consensus 20 ~~~~psffsthm~tILiaIvVliiii-ivli~lcssRKkKaa-AAi~e 65 (189)
T PF05568_consen 20 PVTPPSFFSTHMYTILIAIVVLIIII-IVLIYLCSSRKKKAA-AAIEE 65 (189)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH-hhhhh
Confidence 34567777777788777766655433 345668888888887 66664
No 19
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=26.35 E-value=29 Score=25.59 Aligned_cols=9 Identities=44% Similarity=0.959 Sum_probs=6.6
Q ss_pred CccccCCCc
Q 041242 344 APVVEPNNK 352 (544)
Q Consensus 344 ~p~V~psD~ 352 (544)
+|+|||+||
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 467888875
No 20
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=25.35 E-value=2.6e+02 Score=31.98 Aligned_cols=57 Identities=30% Similarity=0.570 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc----hhHHHHHHHHHHHHH------HHHHHHHHHHH
Q 041242 25 AVALVCAVLLILSILIEHGIHSLSKWFQKRQ----KKAMSEALEKIKAEL------MLLGFLSLLLT 81 (544)
Q Consensus 25 aVA~Vc~v~v~iSi~~Er~lH~lgk~lkkk~----kkaL~eALeKiK~EL------MLLGFISLLLt 81 (544)
.+..+....+++++.++..+|.+.+|.++++ +.++.+|+.+.=.=+ +.+||.+|+++
T Consensus 620 ~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s 686 (719)
T TIGR00921 620 FLAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLS 686 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 3455556668889999999999999987654 367777777665533 44577776663
No 21
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=24.72 E-value=1.4e+02 Score=33.23 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=57.7
Q ss_pred hhHHHHHHhHhhhhcCCCCCCcHHHHHHHHH-h---hccccccc-cchhHHHHHHHhhh------------hcccchhHH
Q 041242 248 VDYMTMRHGFINAHFAPNTSFDFHKYIKRSL-E---DDFKVVVG-ISIPLWIVAVIFLL------------VNVYKWDSL 310 (544)
Q Consensus 248 ~DYltLR~GFI~~H~~~~~kFDFhkYi~RsL-E---dDFk~VVG-IS~~lW~~vviFlL------------lnv~Gw~~y 310 (544)
--|+|+|.+|+.-... +++.|.+ + ++ ++ | ||+..=++..+=-- .-.-|=...
T Consensus 13 Gl~~Ti~~~f~Q~r~~--------~~~~~~~~~~~~~~-~~--g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAv 81 (425)
T TIGR00835 13 GLFFTIRLGFVQFRYL--------PAAFRLLFGKRKEQ-GK--GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAV 81 (425)
T ss_pred HHHHHHHHhhHHHHHH--------HHHHHHHhCCCCCC-CC--CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCch
Confidence 3589999999954211 1222222 1 11 11 5 88865443322111 112355689
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhcc--cccCCccccCCCccc
Q 041242 311 SWLTIILLVGTKLELVIMEMAQEIQDRTT--VVRGAPVVEPNNKFF 354 (544)
Q Consensus 311 fWlillLlVGtKLq~IIt~malei~e~~~--~v~G~p~V~psD~~F 354 (544)
|||-+.-++|.-..++...|++...++.+ ...|-|...-.+.++
T Consensus 82 FWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~ 127 (425)
T TIGR00835 82 FWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLG 127 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhC
Confidence 99977777777788899999998875433 266777666666665
No 22
>PRK13664 hypothetical protein; Provisional
Probab=24.55 E-value=72 Score=26.60 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=15.6
Q ss_pred HHHHH-HHHHHHhhhHHHHHHH
Q 041242 309 SLSWL-TIILLVGTKLELVIME 329 (544)
Q Consensus 309 ~yfWl-illLlVGtKLq~IIt~ 329 (544)
-|.|+ |++++||--+..|=.-
T Consensus 6 dyWWilill~lvG~i~N~iK~l 27 (62)
T PRK13664 6 KYWWILVLVFLVGVLLNVIKDL 27 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 38888 8999999866665433
No 23
>PHA03105 EEV glycoprotein; Provisional
Probab=24.41 E-value=71 Score=31.50 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhchhH
Q 041242 26 VALVCAVLLILSILIEHGIHSLSKWFQKRQKKA 58 (544)
Q Consensus 26 VA~Vc~v~v~iSi~~Er~lH~lgk~lkkk~kka 58 (544)
+.++|..++++..++--.-|.+.|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 346788888888888888999999999888764
No 24
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=22.65 E-value=51 Score=33.85 Aligned_cols=38 Identities=29% Similarity=0.559 Sum_probs=26.6
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHhhhhcccchhHHHHH
Q 041242 271 HKYIKRSLEDDFKVVVGISIPLWIVAVIFLLVNVYKWDSLSWL 313 (544)
Q Consensus 271 hkYi~RsLEdDFk~VVGIS~~lW~~vviFlLlnv~Gw~~yfWl 313 (544)
+.|=.| +||+-.++| +..||.|++|++|.=. .+.++||
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wm 62 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWM 62 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHH
Confidence 445444 899888888 7899999988776522 3456665
No 25
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=20.78 E-value=3.3e+02 Score=33.27 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=32.7
Q ss_pred cCCC--cccccCCchHHHHHHHHHhhhhhhHHHHHHHHHhhcCcc
Q 041242 348 EPNN--KFFWFNRPEWILFLIHYTLFQNAFQMAFFLWIVYEFGIH 390 (544)
Q Consensus 348 ~psD--~~FWF~rP~llL~LIHfiLFQNAFelAfF~W~~~~fG~~ 390 (544)
+|++ +=..++++.++..++-..++|-.++++.|+|.++.+|+.
T Consensus 809 ~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~ 853 (997)
T TIGR01106 809 QPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFL 853 (997)
T ss_pred CCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4543 346777777777777778899999999999998877753
No 26
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=20.52 E-value=2.9e+02 Score=23.80 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhchhHHHHHHHHHHHHHHH
Q 041242 25 AVALVCAVLLILSILIEHGIHSLSKWFQKRQKKAMSEALEKIKAELML 72 (544)
Q Consensus 25 aVA~Vc~v~v~iSi~~Er~lH~lgk~lkkk~kkaL~eALeKiK~ELML 72 (544)
.+++++.+++++.-.+...-..=.+|.+.| .+.|++|.|.++
T Consensus 53 ~~~~~l~~~~~~~~~~~~~~~~~~~W~~~r------~tae~lk~e~~~ 94 (112)
T PF14015_consen 53 LVAAILSALAAILASLAAFFRFHERWIRYR------ATAESLKREKWL 94 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHH------HHHHHHHHHHHH
Confidence 344466677777777777777777777765 345556666553
No 27
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=20.29 E-value=78 Score=35.52 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Q 041242 27 ALVCAVLLILSILIEHGIHSLSKWF 51 (544)
Q Consensus 27 A~Vc~v~v~iSi~~Er~lH~lgk~l 51 (544)
-.||+|||.+|++==.++|++.+..
T Consensus 309 L~vCFvfVF~sLLEYA~V~Y~~~~~ 333 (459)
T KOG3643|consen 309 LGVCFVFVFLSLLEYAAVNYMFKRR 333 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4699999999998777888888865
Done!