Query 041242
Match_columns 544
No_of_seqs 179 out of 251
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 08:18:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041242.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041242hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 21.5 19 0.0014 25.9 1.7 18 360-377 29-46 (51)
2 d3b60a2 f.37.1.1 (A:10-328) Mu 13.0 1.6E+02 0.012 24.3 6.3 26 24-49 156-181 (319)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 11.6 2E+02 0.014 21.7 5.9 38 30-67 7-44 (158)
4 d1zkea1 a.30.6.1 (A:1-79) Hypo 9.3 48 0.0035 25.6 1.1 16 56-71 62-77 (79)
5 d1xrda1 f.3.1.1 (A:1-52) Light 8.7 75 0.0055 22.9 1.9 16 157-172 14-30 (52)
6 d1ug0a_ a.217.1.1 (A:) Splicin 8.2 88 0.0064 24.1 2.3 54 321-387 25-80 (88)
7 d2j3wa1 d.110.4.3 (A:1-140) Se 7.8 77 0.0056 26.2 1.9 33 412-448 105-137 (140)
8 d2hyda2 f.37.1.1 (A:1-323) Put 7.6 2.4E+02 0.017 23.4 5.2 23 24-46 161-183 (323)
9 d1yu8x1 a.14.1.1 (X:42-76) Vil 7.3 39 0.0028 22.6 -0.3 12 279-290 3-14 (35)
10 d1unda_ a.14.1.1 (A:) Advillin 7.2 39 0.0029 22.7 -0.3 12 279-290 4-15 (36)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.51 E-value=19 Score=25.86 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhhhhhhHH
Q 041242 360 EWILFLIHYTLFQNAFQM 377 (544)
Q Consensus 360 ~llL~LIHfiLFQNAFel 377 (544)
.++|-|.|=.=|||||-|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 589999999999999986
No 2
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=13.03 E-value=1.6e+02 Score=24.30 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041242 24 WAVALVCAVLLILSILIEHGIHSLSK 49 (544)
Q Consensus 24 WaVA~Vc~v~v~iSi~~Er~lH~lgk 49 (544)
|.+++++.+++.+.+++-....+-.+
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~~ 181 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRFR 181 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhHHH
Confidence 56677777777777766555444333
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=11.64 E-value=2e+02 Score=21.68 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhchhHHHHHHHHHH
Q 041242 30 CAVLLILSILIEHGIHSLSKWFQKRQKKAMSEALEKIK 67 (544)
Q Consensus 30 c~v~v~iSi~~Er~lH~lgk~lkkk~kkaL~eALeKiK 67 (544)
..|+++|+|+.==++=.+..+.++.+.+.....+.-++
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i~ 44 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQK 44 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667776667777777777766555444444333
No 4
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=9.33 E-value=48 Score=25.62 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 041242 56 KKAMSEALEKIKAELM 71 (544)
Q Consensus 56 kkaL~eALeKiK~ELM 71 (544)
-|+..+||.|+|.|+.
T Consensus 62 LK~~IdaLNKiKke~l 77 (79)
T d1zkea1 62 LKELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3678999999999973
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=8.67 E-value=75 Score=22.94 Aligned_cols=16 Identities=50% Similarity=0.835 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHH-HH
Q 041242 157 LHQLHIFIFVLAVF-HV 172 (544)
Q Consensus 157 lHQLHIFIFvLAv~-HV 172 (544)
+--+++|+|+||+. |.
T Consensus 14 lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 14 LVGLATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33479999999964 53
No 6
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.20 E-value=88 Score=24.07 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHhhhcccccCCccc-cCCCcccccCC-chHHHHHHHHHhhhhhhHHHHHHHHHhhc
Q 041242 321 TKLELVIMEMAQEIQDRTTVVRGAPVV-EPNNKFFWFNR-PEWILFLIHYTLFQNAFQMAFFLWIVYEF 387 (544)
Q Consensus 321 tKLq~IIt~malei~e~~~~v~G~p~V-~psD~~FWF~r-P~llL~LIHfiLFQNAFelAfF~W~~~~f 387 (544)
.++..||.++|.=|++.+...+-...- +.+|..|||=+ |. .=.-.|+-|-+++|
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~d~~-------------~~~~~YY~~kl~e~ 80 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKN-------------SREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSS-------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCceeeCCCC-------------CCCcHHHHHHHHHH
Confidence 367889999999998876554433222 35788899843 33 22335677766665
No 7
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.75 E-value=77 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=26.4
Q ss_pred cccccccchhHHHHHhhcccccchhhhHHHHHHHHHH
Q 041242 412 FLCSYITFPLYALVTQMGSHMKKSIFEEQTAKALKKW 448 (544)
Q Consensus 412 ~LCSY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W 448 (544)
.-+-|+.=|+| +.|+..+-..|+++|++..++|
T Consensus 105 lYv~~v~NPfy----~~~~pI~s~~Fd~~v~~~~~~~ 137 (140)
T d2j3wa1 105 LYIKFAMNPFY----EPNSPIRSSAFDRKVQFLGKKH 137 (140)
T ss_dssp HHHHHHHSTTC----CTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCccC----CCCCcccCHHHHHHHHHHHHHH
Confidence 33566777888 4677889999999999999888
No 8
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=7.64 E-value=2.4e+02 Score=23.35 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 041242 24 WAVALVCAVLLILSILIEHGIHS 46 (544)
Q Consensus 24 WaVA~Vc~v~v~iSi~~Er~lH~ 46 (544)
|.+++++.+++.+.+++-..+.+
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~ 183 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFG 183 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhcc
Confidence 55666666666666665554433
No 9
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.29 E-value=39 Score=22.58 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=8.9
Q ss_pred hhccccccccch
Q 041242 279 EDDFKVVVGISI 290 (544)
Q Consensus 279 EdDFk~VVGIS~ 290 (544)
++||..|.|+|.
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 577888888774
No 10
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.19 E-value=39 Score=22.66 Aligned_cols=12 Identities=50% Similarity=0.742 Sum_probs=8.9
Q ss_pred hhccccccccch
Q 041242 279 EDDFKVVVGISI 290 (544)
Q Consensus 279 EdDFk~VVGIS~ 290 (544)
++||..|.|+|.
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 577888888774
Done!