BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041243
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
Length = 405
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/381 (61%), Positives = 287/381 (75%), Gaps = 5/381 (1%)
Query: 23 SLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADK 82
+L+ L +L P +EV R+L+G+ + LEL + K ++ ++ FD++G+ F A +
Sbjct: 8 NLNDCLEKHLPPDELKEVKRILYGVEEDQTLEL---PTSAKDIAEQNGFDIKGYRFTARE 64
Query: 83 EFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTM 142
E R+ R+VRVG IQNSIV+PTT Q++AI+ K+K +I AA +G NI+C QEAWTM
Sbjct: 65 EQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTM 124
Query: 143 PFAFCTREK-RWCEFAEPVD-GESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXX 200
PFAFCTREK WCEFAE + G +T+ L ELA+ YNMVII ILERD+ HG+TIWNTA
Sbjct: 125 PFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVV 184
Query: 201 XXXXXXXXXKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWL 260
KHRKNHIPRVGDFNESTYYMEGNTGHPVFET FGK+AVNICYGRHHP NW+
Sbjct: 185 ISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWM 244
Query: 261 AFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDG 320
FGLNGAEIVFNPSAT+G LSEP+W IEARNAAIANSYF INRVGTE FPN +TSGDG
Sbjct: 245 MFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSGDG 304
Query: 321 KPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYE 380
HK+FG FYGSS+ +APDGS TPSLSR +DGLL+ ++DLNLCRQ+KD WGFRMT R
Sbjct: 305 NKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVP 364
Query: 381 LYAEMLANYSKADYEPQVISD 401
LYAE S+ ++PQ+I +
Sbjct: 365 LYAESFKKASEHGFKPQIIKE 385
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 121/275 (44%), Gaps = 35/275 (12%)
Query: 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTRE 150
V+VG IQ P L LD+ + K + LI A G ++ L E + + F +RE
Sbjct: 2 VKVGYIQXE---PKILE-LDKN---YSKAEKLIKEASKEGAKLVVLPELFDTGYNFESRE 54
Query: 151 KRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXXXXXXXXXXXK 210
+ + + +GE+T FL ELAR+ + I++ E+ G+ ++N+A K
Sbjct: 55 EVFDVAQQIPEGETTTFLXELARELGLYIVAGTAEKS---GNYLYNSAVVVGPRGYIG-K 110
Query: 211 HRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIV 270
+RK H+ + E ++ G+ G VF+ F K+ V IC+ P + L GAEI+
Sbjct: 111 YRKIHL----FYREKVFFEPGDLGFKVFDIGFAKVGVXICFDWFFPESARTLALKGAEII 166
Query: 271 FNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHF 330
+P+ V + PI A+ N + + +RVG E F
Sbjct: 167 AHPANLVXPYAPRAXPIR----ALENRVYTITADRVGEE----------------RGLKF 206
Query: 331 YGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCR 365
G S ++P S + + + ++DLNL R
Sbjct: 207 IGKSLIASPKAEVLSIASETEEEIGVVEIDLNLAR 241
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 30/251 (11%)
Query: 116 FQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-DGESTQFLQELARK 174
+ K + LI A G ++ L E + + F TRE+ + E A+ + +GE+T FL ++AR
Sbjct: 20 YSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVF-EIAQKIPEGETTTFLMDVARD 78
Query: 175 YNMVIISPILERDVNHGDTIWNTAXXXXXXXXXXXKHRKNHIPRVGDFNESTYYMEGNTG 234
+ I++ E+D GD ++N+A K+RK H+ + E ++ G+ G
Sbjct: 79 TGVYIVAGTAEKD---GDVLYNSAVVVGPRGFIG-KYRKIHL----FYREKFFFEPGDLG 130
Query: 235 HPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAI 294
VF+ F K+ V I + P + L GA+++ +P+ V + PI A+
Sbjct: 131 FRVFDLGFMKVGVMIXFDWFFPESARTLALKGADVIAHPANLVMPYAPRAMPIR----AL 186
Query: 295 ANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGL 354
N + + +RVG E G F G S ++P S + +
Sbjct: 187 ENKVYTVTADRVGEE-------RG---------LKFIGKSLIASPKAEVLSMASETEEEV 230
Query: 355 LISDMDLNLCR 365
++++DL+L R
Sbjct: 231 GVAEIDLSLVR 241
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 30/267 (11%)
Query: 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVII- 180
L+ A G NI+ L E + P+ + ++AE + GESTQ L E+A++ ++ +I
Sbjct: 27 LVREAAKQGANIVSLPECFNSPYG----TTYFPDYAEKIPGESTQKLSEVAKESSIYLIG 82
Query: 181 SPILERDVNHGDTIWNTAXXXXXXXXXXXKHRKNH-----IPRVGDFNESTYYMEGNTGH 235
I E D ++NT KHRK H +P F ES G++
Sbjct: 83 GSIPEEDAGK---LYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDS-F 138
Query: 236 PVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIA 295
F+T + K+ + ICY + G +++ P A W + R A+
Sbjct: 139 STFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVD 198
Query: 296 NSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLL 355
N +V + + + D K + +GH S P G + + + +L
Sbjct: 199 NQVYVATAS-----------PARDDKASYVAWGH----STVVDPWGQVL-TKAGTEETIL 242
Query: 356 ISDMDLNLCRQLKDKWGFRMTARYELY 382
SD+DL +++ + R +LY
Sbjct: 243 YSDIDLKKLAEIRQQIPILKQKRADLY 269
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
Length = 291
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 19/219 (8%)
Query: 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVS--GVNILCLQEAWTMPFAFCT 148
++V L+Q S P K A Q+ I+ A ++ L E + P++
Sbjct: 11 IKVALVQLSGSSP-------DKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYS-TD 62
Query: 149 REKRWCEFAEPVD-GESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXXXXXXXXX 207
+ +++ E P + S QFL LA K+ ++++ + D I+NT+
Sbjct: 63 QFRKYSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKL 122
Query: 208 XXKHRKNH-----IPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAF 262
KHRK H IP F+ES G + +T +GK V ICY P +
Sbjct: 123 IDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTI-DTKYGKFGVGICYDMRFPELAMLS 181
Query: 263 GLNGAEIVFNPSATVGELSEPM-WPIEARNAAIANSYFV 300
GA + PSA ++ P+ W + AR+ A+ N +V
Sbjct: 182 ARKGAFAMIYPSA-FNTVTGPLHWHLLARSRAVDNQVYV 219
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 109/282 (38%), Gaps = 38/282 (13%)
Query: 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRW-------------CEF 156
+ ++ + +L ++ A GVN + E A T RW E
Sbjct: 19 ETREQVVGRLLDMLTNAASRGVNFIVFPE-----LALTTFFPRWHFTDEAELDSFYETEM 73
Query: 157 AEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXXXXXXXXXXXKHRKNHI 216
PV + EL +N+ ++E V +NT+ K+RK H+
Sbjct: 74 PGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRR---FNTSILVDKSGKIVGKYRKIHL 130
Query: 217 PRVGDFN--------ESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAE 268
P ++ E Y+ G+ G PV++ K+ + IC R P W GL GAE
Sbjct: 131 PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAE 190
Query: 269 IVFNPSATVGELSEPMW-PIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDF 327
I+ G + P P ++ + + + + S+ + +++ GK ++
Sbjct: 191 II------CGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQ--NGAWSAAAGKVGMEEG 242
Query: 328 GHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKD 369
G S AP G + D ++ + +DL+ CR+L++
Sbjct: 243 CMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELRE 284
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 109/282 (38%), Gaps = 38/282 (13%)
Query: 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRW-------------CEF 156
+ ++ + +L ++ A GVN + E A T RW E
Sbjct: 19 ETREQVVGRLLDMLTNAASRGVNFIVFPE-----LALTTFFPRWHFTDEAELDSFYETEM 73
Query: 157 AEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXXXXXXXXXXXKHRKNHI 216
PV + EL +N+ ++E V +NT+ K+RK H+
Sbjct: 74 PGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRR---FNTSILVDKSGKIVGKYRKIHL 130
Query: 217 PRVGDFN--------ESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAE 268
P ++ E Y+ G+ G PV++ K+ + IC R P W GL GAE
Sbjct: 131 PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAE 190
Query: 269 IVFNPSATVGELSEPMW-PIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDF 327
I+ G + P P ++ + + + + S+ + +++ GK ++
Sbjct: 191 II------CGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQ--NGAWSAAAGKVGMEEG 242
Query: 328 GHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKD 369
G S AP G + D ++ + +DL+ CR+L++
Sbjct: 243 CMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELRE 284
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 109/282 (38%), Gaps = 38/282 (13%)
Query: 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRW-------------CEF 156
+ ++ + +L ++ A GVN + E A T RW E
Sbjct: 19 ETREQVVGRLLDMLTNAASRGVNFIVFPE-----LALTTFFPRWHFTDEAELDSFYETEM 73
Query: 157 AEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXXXXXXXXXXXKHRKNHI 216
PV + EL +N+ ++E V +NT+ K+RK H+
Sbjct: 74 PGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRR---FNTSILVDKSGKIVGKYRKIHL 130
Query: 217 PRVGDFN--------ESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAE 268
P ++ E Y+ G+ G PV++ K+ + IC R P W GL GAE
Sbjct: 131 PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAE 190
Query: 269 IVFNPSATVGELSEPMW-PIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDF 327
I+ G + P P ++ + + + + S+ + +++ GK ++
Sbjct: 191 II------CGGYNTPTHNPPVPQHDHLTSFHHLLSMQCGSYQ--NGAWSAAAGKVGMEEG 242
Query: 328 GHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKD 369
G S AP G + D ++ + +DL+ CR+L++
Sbjct: 243 CMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELRE 284
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 116/302 (38%), Gaps = 42/302 (13%)
Query: 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRW-------------CEF 156
+ ++ + +L ++ A G N + E A T RW E
Sbjct: 18 ETREQVVVRLLDMLTKAASRGANFIVFPE-----LALTTFFPRWHFTDEAELDSFYETEM 72
Query: 157 AEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXXXXXXXXXXXKHRKNHI 216
PV + EL +N+ ++E V +NT+ K+RK H+
Sbjct: 73 PGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRR---FNTSILVDKSGKIVGKYRKIHL 129
Query: 217 PRVGDFN--------ESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAE 268
P ++ E Y+ G+ G PV++ K+ + IC R P W GL GAE
Sbjct: 130 PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAE 189
Query: 269 IVFNPSATVGELSEPMW-PIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDF 327
I+ G + P P ++ + + + + S+ + +++ GK ++
Sbjct: 190 II------CGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQ--NGAWSAAAGKVGMEEN 241
Query: 328 GHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDK-WGF---RMTARYELYA 383
G S AP G + D ++ + +DL+ CR+L++ + F R Y L A
Sbjct: 242 CMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIA 301
Query: 384 EM 385
E+
Sbjct: 302 EL 303
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 104/275 (37%), Gaps = 27/275 (9%)
Query: 116 FQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREK-RWCEFAEPVDGESTQFLQELARK 174
FQ K +I+ AG ++ L E F F K + A D E + +ELARK
Sbjct: 32 FQAAKNMIERAGEKKCEMVFLPEC----FDFIGLNKNEQIDLAMATDCEYMEKYRELARK 87
Query: 175 YNM-VIISPILERDVNHGDTIWNTAXXXXXXXXXXXKHRKNH-----IPRVGDFNESTYY 228
+N+ + + + +D + WNT ++ K H IP ES +
Sbjct: 88 HNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFS 147
Query: 229 MEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIE 288
G P +T G++ ++ICY P L GA+++ PSA W
Sbjct: 148 KAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETL 207
Query: 289 ARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLS 348
R AI N +V + + G P+ + +GH + A C+
Sbjct: 208 LRARAIENQCYVVAAAQTGAH-----------NPKRQSYGHSMVVDPWGAVVAQCSE--- 253
Query: 349 RFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYA 383
R + +++DL+ L++ R +LY
Sbjct: 254 --RVDMCFAEIDLSYVDTLREMQPVFSHRRSDLYT 286
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 115/302 (38%), Gaps = 42/302 (13%)
Query: 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRW-------------CEF 156
+ ++ + +L ++ A G N + E A T RW E
Sbjct: 18 ETREQVVVRLLDMLTKAASRGANFIVFPE-----LALTTFFPRWHFTDEAELDSFYETEM 72
Query: 157 AEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXXXXXXXXXXXKHRKNHI 216
PV + EL +N+ ++E V +NT+ K+RK H+
Sbjct: 73 PGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRR---FNTSILVDKSGKIVGKYRKIHL 129
Query: 217 PRVGDFN--------ESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAE 268
P ++ E Y+ G+ G PV++ K+ + I R P W GL GAE
Sbjct: 130 PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAE 189
Query: 269 IVFNPSATVGELSEPMW-PIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDF 327
I+ G + P P ++ + + + + S+ + +++ GK ++
Sbjct: 190 II------CGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQ--NGAWSAAAGKAGMEEN 241
Query: 328 GHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDK-WGF---RMTARYELYA 383
G S AP G + D ++ + +DL+ CR+L++ + F R Y L A
Sbjct: 242 CMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIA 301
Query: 384 EM 385
E+
Sbjct: 302 EL 303
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYU|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYV|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2DYV|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 20/224 (8%)
Query: 94 GLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDA-----AGVSGVNILCLQEAWTMPFAFCT 148
G + +I P + ++ +K I ++ +I AG GV ++ E T
Sbjct: 13 GFLVAAIQFPVPI--VNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGL---- 66
Query: 149 REKRWC--EFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXXXXXXXX 206
+W EF V G+ T+ + ++ + + I+ER+ + +NTA
Sbjct: 67 NTAKWLSEEFLLDVPGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGE 126
Query: 207 XXXKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFG-KIAVNICYGRHHPLNWLAFGLN 265
K+RK + +N + G+ G PV E G K+AV IC+ P
Sbjct: 127 IILKYRK-----LFPWNPIEPWYPGDLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYK 181
Query: 266 GAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTE 309
G + S ++++ W + R+ A N + S+N G +
Sbjct: 182 GCNVYIRISGYSTQVND-QWILTNRSNAWHNLMYTVSVNLAGYD 224
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
pdb|3P8K|B Chain B, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
Length = 281
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 99/263 (37%), Gaps = 47/263 (17%)
Query: 131 VNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNH 190
V+++ L E W + + E A+ G+S F++ LA KY + I++ + N
Sbjct: 54 VDVVVLPEXWNNGYDL----EHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRN- 108
Query: 191 GDTIWNTAXXXXXXXXXXXKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVN-I 249
+ I+NTA ++ K H+ V E + G F+ + G I
Sbjct: 109 -NQIFNTAFSVNKSGQLINEYDKVHL--VPXLREHEFLTAGEYVAEPFQLSDGTYVTQLI 165
Query: 250 CYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWP----------IEARNAAIANSYF 299
CY P +GA+I F + WP ++AR AI N+ F
Sbjct: 166 CYDLRFPELLRYPARSGAKIAFYVA---------QWPXSRLQHWHSLLKAR--AIENNXF 214
Query: 300 VGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDM 359
V N G DG + + G S P+G L+ D +L D+
Sbjct: 215 VIGTNSTGF----------DGNTE------YAGHSIVINPNGDLVGELNESAD-ILTVDL 257
Query: 360 DLNLCRQLKDKWGFRMTARYELY 382
+LN Q ++ + + +LY
Sbjct: 258 NLNEVEQQRENIPVFKSIKLDLY 280
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 20/224 (8%)
Query: 94 GLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDA-----AGVSGVNILCLQEAWTMPFAFCT 148
G + +I P + ++ +K I ++ +I AG GV ++ E T
Sbjct: 13 GFLVAAIQFPVPI--VNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGL---- 66
Query: 149 REKRWC--EFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXXXXXXXX 206
+W EF V G+ T+ + ++ + + I+ER+ + +NTA
Sbjct: 67 NTAKWLSEEFLLDVPGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGE 126
Query: 207 XXXKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFG-KIAVNICYGRHHPLNWLAFGLN 265
K+RK + +N + G+ G PV E G K+AV I + P
Sbjct: 127 IILKYRK-----LFPWNPIEPWYPGDLGMPVCEGPGGSKLAVCISHDGMIPELAREAAYK 181
Query: 266 GAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTE 309
G + S ++++ W + R+ A N + S+N G +
Sbjct: 182 GCNVYIRISGYSTQVND-QWILTNRSNAWHNLMYTVSVNLAGYD 224
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From
Nesterenkonia Sp
Length = 283
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 223 NESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVG-ELS 281
E ++ G PV ++++ +CY P A GA++V P+A G E S
Sbjct: 138 EEKAAFVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETS 197
Query: 282 EPMWPIEARNAAIANSYFVGSINRVGTE 309
P + AR A+ N + N G E
Sbjct: 198 VPGILLPAR--AVENGITLAYANHCGPE 223
>pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
pdb|2QGY|B Chain B, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
Length = 391
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 153 WCEFAEPVDGESTQFLQELARKYNMVIIS 181
W E EPVDGE+ L E+ +NM +++
Sbjct: 224 WIE--EPVDGENISLLTEIKNTFNMKVVT 250
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 243 GKIAVNICYGRHHPLNWLAFG---------------LNGAEIVFNPSATVGELSEPMWPI 287
G+IAV C+ + H +N + L+GA +VF+ S V SE +W
Sbjct: 32 GRIAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR- 90
Query: 288 EARNAAIANSYFVGSINRVGTEVF 311
+A + F +++ G +++
Sbjct: 91 QAEKYKVPRIAFANKMDKTGADLW 114
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
Length = 590
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 213 KNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNIC 250
K+H+P G F+E Y++ G+T P+ IA+ IC
Sbjct: 127 KHHLPNYGVFDEFRYFVPGDT-MPIVRLHGVDIALAIC 163
>pdb|2QQU|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D239a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 535
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 262 FGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANS----YFVGSINRVGTEVFPNPFTS 317
FG NG E +++ GE +E + ++A++ Y +G+ +RV + P+
Sbjct: 209 FGSNGVE-----TSSFGEPNEIL--KHVLKISLADTKHDYYTIGTYDRVKDKFVPDNGFK 261
Query: 318 GDGKPQHKDFGHFYGSSHF 336
DG D+G +Y S F
Sbjct: 262 MDGTAPRYDYGKYYASKTF 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,888,993
Number of Sequences: 62578
Number of extensions: 539069
Number of successful extensions: 969
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 25
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)