Query 041243
Match_columns 406
No_of_seqs 228 out of 1523
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0808 Carbon-nitrogen hydrol 100.0 9E-114 2E-118 790.8 30.1 383 16-402 3-387 (387)
2 PLN00202 beta-ureidopropionase 100.0 5.1E-88 1.1E-92 684.0 41.1 393 14-406 10-402 (405)
3 cd07587 ML_beta-AS mammalian-l 100.0 2.7E-83 5.8E-88 642.7 36.6 361 24-388 1-363 (363)
4 cd07568 ML_beta-AS_like mammal 100.0 6E-52 1.3E-56 403.6 31.0 284 88-386 1-285 (287)
5 TIGR03381 agmatine_aguB N-carb 100.0 7.2E-51 1.6E-55 393.9 28.5 270 91-383 1-277 (279)
6 cd07564 nitrilases_CHs Nitrila 100.0 2.1E-49 4.5E-54 388.3 28.7 280 91-386 1-295 (297)
7 PLN02747 N-carbamolyputrescine 100.0 5.1E-49 1.1E-53 385.1 31.4 284 86-388 2-292 (296)
8 cd07569 DCase N-carbamyl-D-ami 100.0 3.6E-48 7.8E-53 380.3 28.7 275 89-386 2-301 (302)
9 cd07573 CPA N-carbamoylputresc 100.0 1.7E-47 3.6E-52 371.5 30.6 274 91-386 1-283 (284)
10 PLN02504 nitrilase 100.0 1.3E-47 2.8E-52 382.7 27.8 284 88-389 22-326 (346)
11 cd07565 aliphatic_amidase alip 100.0 7.9E-47 1.7E-51 369.1 31.1 269 91-390 1-272 (291)
12 cd07580 nitrilase_2 Uncharacte 100.0 2.8E-47 6.1E-52 367.3 27.2 259 92-382 1-268 (268)
13 PRK10438 C-N hydrolase family 100.0 1.3E-46 2.7E-51 361.3 28.5 252 90-382 3-255 (256)
14 cd07579 nitrilase_1_R2 Second 100.0 7.8E-47 1.7E-51 367.1 26.3 248 92-384 1-270 (279)
15 cd07583 nitrilase_5 Uncharacte 100.0 2.3E-46 5E-51 357.6 28.4 253 92-378 1-253 (253)
16 cd07576 R-amidase_like Pseudom 100.0 2.1E-46 4.6E-51 357.7 27.7 254 92-380 1-254 (254)
17 PLN02798 nitrilase 100.0 4.1E-46 8.9E-51 363.1 30.1 268 87-383 7-283 (286)
18 cd07584 nitrilase_6 Uncharacte 100.0 1.3E-45 2.8E-50 353.4 29.0 257 92-378 1-257 (258)
19 cd07572 nit Nit1, Nit 2, and r 100.0 2.4E-45 5.1E-50 352.6 27.9 259 92-378 1-265 (265)
20 cd07577 Ph0642_like Pyrococcus 100.0 1.4E-45 3E-50 353.8 25.4 256 92-382 1-259 (259)
21 cd07581 nitrilase_3 Uncharacte 100.0 4.8E-45 1E-49 348.7 28.8 253 93-378 1-255 (255)
22 cd07586 nitrilase_8 Uncharacte 100.0 3E-45 6.5E-50 353.0 27.1 260 92-383 1-266 (269)
23 cd07578 nitrilase_1_R1 First n 100.0 8.3E-45 1.8E-49 348.4 27.3 256 91-381 1-258 (258)
24 cd07582 nitrilase_4 Uncharacte 100.0 2.5E-44 5.4E-49 351.8 30.2 269 92-375 2-287 (294)
25 cd07585 nitrilase_7 Uncharacte 100.0 1.1E-44 2.4E-49 347.5 27.0 256 92-382 1-261 (261)
26 cd07567 biotinidase_like bioti 100.0 5.4E-45 1.2E-49 356.7 25.3 251 92-366 2-280 (299)
27 COG0388 Predicted amidohydrola 100.0 3.8E-44 8.1E-49 346.8 28.8 266 89-382 1-267 (274)
28 PRK13286 amiE acylamide amidoh 100.0 1E-43 2.2E-48 354.0 31.3 273 85-389 7-284 (345)
29 cd07574 nitrilase_Rim1_like Un 100.0 2.8E-44 6.1E-49 348.4 24.9 266 91-381 1-280 (280)
30 cd07575 Xc-1258_like Xanthomon 100.0 8.9E-44 1.9E-48 340.3 27.8 250 91-379 1-250 (252)
31 PRK13287 amiF formamidase; Pro 100.0 2.7E-43 5.8E-48 350.0 30.7 260 85-373 8-271 (333)
32 KOG0807 Carbon-nitrogen hydrol 100.0 5.7E-45 1.2E-49 332.8 16.6 271 88-385 13-291 (295)
33 cd07197 nitrilase Nitrilase su 100.0 1.7E-42 3.7E-47 329.2 28.9 249 93-374 1-249 (253)
34 cd07570 GAT_Gln-NAD-synth Glut 100.0 1.9E-43 4.1E-48 339.1 21.3 254 92-377 1-256 (261)
35 cd07571 ALP_N-acyl_transferase 100.0 9.6E-41 2.1E-45 322.9 22.3 232 91-363 1-251 (270)
36 PRK13981 NAD synthetase; Provi 100.0 4.5E-39 9.8E-44 339.2 25.2 240 91-363 1-243 (540)
37 PRK02628 nadE NAD synthetase; 100.0 3.6E-38 7.7E-43 339.3 27.4 265 85-378 7-295 (679)
38 KOG0806 Carbon-nitrogen hydrol 100.0 2E-38 4.4E-43 302.5 15.9 273 86-386 9-295 (298)
39 cd07566 ScNTA1_like Saccharomy 100.0 1E-37 2.2E-42 305.2 21.1 223 92-338 1-265 (295)
40 PLN02339 NAD+ synthase (glutam 100.0 3.3E-36 7.2E-41 323.8 25.2 256 90-376 3-289 (700)
41 KOG0805 Carbon-nitrogen hydrol 100.0 3.5E-35 7.6E-40 269.3 20.0 289 85-391 12-321 (337)
42 PRK00302 lnt apolipoprotein N- 100.0 1.2E-34 2.6E-39 303.4 21.3 235 89-363 218-471 (505)
43 TIGR00546 lnt apolipoprotein N 100.0 8.1E-34 1.8E-38 288.2 20.3 216 88-343 157-391 (391)
44 PF00795 CN_hydrolase: Carbon- 100.0 8.5E-33 1.9E-37 251.4 17.9 176 92-275 1-186 (186)
45 PRK12291 apolipoprotein N-acyl 100.0 4.6E-28 9.9E-33 247.5 20.8 192 91-308 195-405 (418)
46 COG0815 Lnt Apolipoprotein N-a 99.9 1.3E-26 2.9E-31 241.4 21.5 241 84-364 221-483 (518)
47 PRK13825 conjugal transfer pro 99.9 2.9E-22 6.2E-27 202.5 19.0 190 91-305 186-387 (388)
48 KOG2303 Predicted NAD synthase 99.6 2.8E-14 6.1E-19 142.8 13.0 249 88-369 2-283 (706)
49 cd07565 aliphatic_amidase alip 85.8 5.5 0.00012 38.9 9.6 72 122-210 161-232 (291)
50 KOG0807 Carbon-nitrogen hydrol 80.8 2.3 5E-05 40.5 4.3 73 128-215 184-256 (295)
51 cd07572 nit Nit1, Nit 2, and r 77.7 7.8 0.00017 36.7 7.2 72 122-208 161-232 (265)
52 cd07576 R-amidase_like Pseudom 77.2 16 0.00035 34.3 9.2 69 124-209 152-220 (254)
53 cd07567 biotinidase_like bioti 75.9 11 0.00024 37.2 7.8 69 124-211 190-260 (299)
54 PRK13286 amiE acylamide amidoh 75.8 18 0.00039 36.5 9.4 72 122-210 174-245 (345)
55 cd07568 ML_beta-AS_like mammal 70.8 22 0.00048 34.2 8.5 70 258-344 35-120 (287)
56 cd07580 nitrilase_2 Uncharacte 70.5 34 0.00074 32.5 9.7 75 124-209 154-228 (268)
57 PLN02798 nitrilase 70.2 20 0.00043 34.7 8.1 72 123-209 172-244 (286)
58 cd07586 nitrilase_8 Uncharacte 70.0 24 0.00051 33.5 8.4 74 126-209 155-228 (269)
59 cd07581 nitrilase_3 Uncharacte 69.6 23 0.0005 33.2 8.2 71 257-344 21-104 (255)
60 cd07583 nitrilase_5 Uncharacte 68.5 22 0.00048 33.4 7.8 71 122-209 151-221 (253)
61 cd07577 Ph0642_like Pyrococcus 67.9 29 0.00064 32.8 8.6 68 124-210 151-221 (259)
62 cd07584 nitrilase_6 Uncharacte 67.5 35 0.00075 32.2 9.0 71 122-209 154-224 (258)
63 PF00795 CN_hydrolase: Carbon- 66.9 19 0.00041 31.9 6.7 68 259-344 27-113 (186)
64 TIGR00542 hxl6Piso_put hexulos 65.8 48 0.001 31.7 9.7 65 110-181 87-151 (279)
65 PLN02747 N-carbamolyputrescine 65.6 31 0.00067 33.4 8.4 70 257-344 29-114 (296)
66 cd07585 nitrilase_7 Uncharacte 65.2 41 0.00088 31.7 9.0 75 123-210 149-223 (261)
67 COG0388 Predicted amidohydrola 65.0 35 0.00075 32.6 8.5 68 127-209 163-230 (274)
68 cd07582 nitrilase_4 Uncharacte 64.4 45 0.00097 32.3 9.2 73 123-210 182-257 (294)
69 cd07564 nitrilases_CHs Nitrila 64.2 39 0.00084 32.9 8.8 71 257-345 24-119 (297)
70 TIGR03381 agmatine_aguB N-carb 64.1 47 0.001 31.6 9.2 76 124-209 160-239 (279)
71 PRK10438 C-N hydrolase family 64.0 29 0.00063 33.0 7.7 66 129-210 154-219 (256)
72 cd07197 nitrilase Nitrilase su 63.1 38 0.00082 31.4 8.3 68 125-209 154-221 (253)
73 cd07570 GAT_Gln-NAD-synth Glut 62.0 29 0.00063 32.7 7.3 70 126-210 158-227 (261)
74 cd03334 Fab1_TCP TCP-1 like do 60.6 67 0.0014 30.9 9.5 109 68-182 61-178 (261)
75 PLN02504 nitrilase 57.9 58 0.0013 32.7 8.9 19 259-277 50-68 (346)
76 cd07587 ML_beta-AS mammalian-l 57.1 41 0.00089 34.1 7.7 69 125-208 236-319 (363)
77 cd00019 AP2Ec AP endonuclease 56.4 1.2E+02 0.0025 29.0 10.5 64 110-181 78-141 (279)
78 PRK09856 fructoselysine 3-epim 56.3 49 0.0011 31.4 7.8 65 110-181 83-147 (275)
79 cd07573 CPA N-carbamoylputresc 56.2 61 0.0013 31.0 8.5 71 257-344 23-109 (284)
80 PF14488 DUF4434: Domain of un 54.2 42 0.00092 30.1 6.5 67 118-185 21-87 (166)
81 PRK13209 L-xylulose 5-phosphat 52.6 1E+02 0.0022 29.4 9.4 65 110-181 92-156 (283)
82 cd07578 nitrilase_1_R1 First n 52.6 67 0.0015 30.3 8.1 68 123-209 155-222 (258)
83 PRK13210 putative L-xylulose 5 52.0 68 0.0015 30.5 8.1 65 110-181 87-151 (284)
84 PRK13287 amiF formamidase; Pro 51.1 97 0.0021 30.9 9.2 72 122-210 173-244 (333)
85 PRK13981 NAD synthetase; Provi 50.1 70 0.0015 34.1 8.5 74 122-210 153-226 (540)
86 PLN00202 beta-ureidopropionase 49.8 72 0.0016 32.9 8.2 69 126-209 258-341 (405)
87 COG2089 SpsE Sialic acid synth 49.0 35 0.00075 34.1 5.4 73 111-183 24-110 (347)
88 cd07569 DCase N-carbamyl-D-ami 47.6 95 0.0021 30.2 8.4 73 258-344 30-121 (302)
89 cd07566 ScNTA1_like Saccharomy 47.6 91 0.002 30.5 8.2 65 265-344 35-114 (295)
90 cd07575 Xc-1258_like Xanthomon 45.4 1.1E+02 0.0025 28.6 8.4 67 259-344 26-102 (252)
91 PF01261 AP_endonuc_2: Xylose 45.2 1.5E+02 0.0032 26.3 8.8 64 112-181 66-130 (213)
92 cd07579 nitrilase_1_R2 Second 43.8 1.1E+02 0.0024 29.5 8.1 66 259-342 24-98 (279)
93 smart00481 POLIIIAc DNA polyme 41.1 1E+02 0.0022 22.6 5.9 46 118-183 16-61 (67)
94 PRK12677 xylose isomerase; Pro 38.9 2.4E+02 0.0053 28.8 10.0 88 89-181 79-177 (384)
95 cd07571 ALP_N-acyl_transferase 38.2 1.1E+02 0.0024 29.2 7.1 70 259-344 32-103 (270)
96 PRK15018 1-acyl-sn-glycerol-3- 36.9 1E+02 0.0022 29.3 6.6 57 110-180 119-175 (245)
97 TIGR00530 AGP_acyltrn 1-acyl-s 34.6 1.3E+02 0.0029 24.4 6.3 47 121-181 80-126 (130)
98 cd07574 nitrilase_Rim1_like Un 34.5 1.7E+02 0.0037 27.8 7.8 67 123-204 162-231 (280)
99 TIGR02631 xylA_Arthro xylose i 31.5 4.1E+02 0.0088 27.1 10.3 67 110-181 108-178 (382)
100 TIGR03569 NeuB_NnaB N-acetylne 31.2 51 0.0011 33.0 3.6 72 111-184 10-97 (329)
101 PRK09461 ansA cytoplasmic aspa 30.6 2.9E+02 0.0062 27.7 8.9 66 243-308 210-275 (335)
102 PF01553 Acyltransferase: Acyl 29.3 1.2E+02 0.0026 24.8 5.1 51 115-180 77-127 (132)
103 cd01821 Rhamnogalacturan_acety 28.8 2.3E+02 0.0049 25.2 7.2 62 112-180 89-150 (198)
104 KOG0806 Carbon-nitrogen hydrol 27.1 1.8E+02 0.004 28.7 6.5 99 173-275 110-225 (298)
105 PTZ00056 glutathione peroxidas 25.7 3.6E+02 0.0079 24.6 8.0 25 113-137 55-79 (199)
106 PF01784 NIF3: NIF3 (NGG1p int 25.5 2.5E+02 0.0054 26.5 7.1 57 246-303 34-94 (241)
107 smart00545 JmjN Small domain f 23.1 1.6E+02 0.0035 20.2 3.8 37 105-141 5-41 (42)
108 cd07990 LPLAT_LCLAT1-like Lyso 22.7 1.7E+02 0.0037 26.3 5.2 48 116-181 88-137 (193)
109 KOG0358 Chaperonin complex com 22.2 2.6E+02 0.0057 28.7 6.6 51 89-139 237-298 (534)
110 PF09142 TruB_C: tRNA Pseudour 22.1 1.1E+02 0.0024 22.2 3.0 36 288-348 8-43 (56)
111 cd01822 Lysophospholipase_L1_l 21.1 2.6E+02 0.0056 24.0 5.9 57 112-180 83-139 (177)
No 1
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-114 Score=790.81 Aligned_cols=383 Identities=75% Similarity=1.278 Sum_probs=379.3
Q ss_pred CCCCccccHHHHHHcCCCchhHhhhhhhhccCCCCCCccccccccchhhhhhcCCceEeeeeecccccccCCCCccEEEE
Q 041243 16 GSICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGL 95 (406)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vrVal 95 (406)
|++++++|||++|+++|+++.|+||+||||| ++++.|.||+++.++|+++||+||||.|.|.+||+|.||.||||+
T Consensus 3 ~a~a~~dsle~~l~~~l~~~~lqev~r~lyg----r~lr~l~lp~~a~~las~~df~lqgy~f~a~keq~r~pr~vrvgl 78 (387)
T KOG0808|consen 3 GAIAGYDSLEQLLSANLKPELLQEVNRLLYG----RSLRQLVLPESAKALASKHDFDLQGYSFSADKEQMRNPRVVRVGL 78 (387)
T ss_pred CcccccchHHHHHHhcCChHHHHHHHHHHhC----CchhhhcCchHHHHhhcccCcceeeeeeccchhhhcCCcEEEEee
Confidence 7899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhH-HhhhcCCCC-cHHHHHHHHHHH
Q 041243 96 IQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKR-WCEFAEPVD-GESTQFLQELAR 173 (406)
Q Consensus 96 iQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~-~~~~ae~~~-~~~~~~l~~lAk 173 (406)
||+.|.+|+++|+.+|..++++++..+|++|+.+||++|||+|.|+|||+|||++.. |++|||+++ ++++++|+++|+
T Consensus 79 iqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~flqklak 158 (387)
T KOG0808|consen 79 IQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTKFLQKLAK 158 (387)
T ss_pred ecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987 999999998 999999999999
Q ss_pred hcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEeccCC
Q 041243 174 KYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGR 253 (406)
Q Consensus 174 k~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICyD~ 253 (406)
+++|+||++++||+..|++.+|||+|||+++|.++|++||+|+|++|+|+|++|||+|+.+||||+|.+|||||+|||.+
T Consensus 159 khdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgriavnicygr 238 (387)
T KOG0808|consen 159 KHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIAVNICYGR 238 (387)
T ss_pred hCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEEEEeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCccccee
Q 041243 254 HHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGS 333 (406)
Q Consensus 254 ~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~ 333 (406)
|||.+|.+++++||+||||||++.+.+++++|.+++|+.||+|++|++.+|++|++.|||+||||||+|+|+||++|||+
T Consensus 239 hhplnwlmy~lngaeiifnpsatvgalseplwpiearnaaianh~ft~~inrvgtevfpneftsgdgkpah~dfghfygs 318 (387)
T KOG0808|consen 239 HHPLNWLMYGLNGAEIIFNPSATVGALSEPLWPIEARNAAIANHYFTGSINRVGTEVFPNEFTSGDGKPAHNDFGHFYGS 318 (387)
T ss_pred CCchhhhhhhccCceEEECCccccccccCccCchhhhhhhhhhceEEEeecccccccCCCcccCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHhcccCCCCCCccccCC
Q 041243 334 SHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDP 402 (406)
Q Consensus 334 S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~~~~~~~~~~~~~~~~ 402 (406)
|++.+||+++++.+++.++|++++++|||+|+|.+++|+|+|+.|+|||+.+++++++|||+|||++||
T Consensus 319 sy~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt~ryemya~~lae~~kpdy~p~iv~e~ 387 (387)
T KOG0808|consen 319 SYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMTARYEMYADLLAEYIKPDYKPQIVSEP 387 (387)
T ss_pred eeeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceehhhHHHHHHHHHHHhCCCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=5.1e-88 Score=684.01 Aligned_cols=393 Identities=86% Similarity=1.423 Sum_probs=371.9
Q ss_pred CCCCCCccccHHHHHHcCCCchhHhhhhhhhccCCCCCCccccccccchhhhhhcCCceEeeeeecccccccCCCCccEE
Q 041243 14 KDGSICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRV 93 (406)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vrV 93 (406)
.+||.++|+|||++|++|||+++|+||+|||||+|||++++.|+||..+...+...+|.+++|.|.+.+||+|+++.|||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rV 89 (405)
T PLN00202 10 ADGSICGYESLHRLLSANLPPELFQEVSRLLLGLNCGRPVEMIALPEAAKALSKAHDFDLQAFRFTADKEQLRAPRVVRV 89 (405)
T ss_pred CCCCchhhhhHHHHHHhhCCHHHHHHHHHHHhCcccCCccccCCCCHHHHHHHHhcCceEEEeeecCCHhHcCCCCeEEE
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHH
Q 041243 94 GLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELAR 173 (406)
Q Consensus 94 aliQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAk 173 (406)
|+||+++..+++.|+..+.++|++++.++++.|+++|||||||||+|++||.+|+++..|.++++..++++++.|+++|+
T Consensus 90 aliQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~ 169 (405)
T PLN00202 90 GLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELAR 169 (405)
T ss_pred EEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHH
Confidence 99999998888888888999999999999999999999999999999999988776556888888877899999999999
Q ss_pred hcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEeccCC
Q 041243 174 KYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGR 253 (406)
Q Consensus 174 k~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICyD~ 253 (406)
+++|+|++|+.+++..+++++|||+++|+++|+++++|||+||+++|+|.|+.+|.+|+.++++|+|++||||++||||+
T Consensus 170 ~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gkiGv~ICYD~ 249 (405)
T PLN00202 170 KYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGR 249 (405)
T ss_pred HCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeEEEEEcccc
Confidence 99999999998876433567999999999999999999999999999999999999999767899999999999999999
Q ss_pred cchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCccccee
Q 041243 254 HHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGS 333 (406)
Q Consensus 254 ~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~ 333 (406)
+||+++|.++.+|||||++|++|....+..+|..++++||+||++|+++||++|.+.++++|++++|++.|.|...|+|+
T Consensus 250 ~FPE~~r~la~~GAdiIl~Psa~~~~~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~~~~f~G~ 329 (405)
T PLN00202 250 HHPLNWLAFGLNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGS 329 (405)
T ss_pred ccHHHHHHHHHCCCcEEEECCCCCCccCHHHHHHHHHHHHHhcCCEEEEeccccccccccccccccccccccccccccce
Confidence 99999999999999999999999766666789999999999999999999999999999999999999999888889999
Q ss_pred eEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHhcccCCCCCCccccCCCCCC
Q 041243 334 SHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDPLLHK 406 (406)
Q Consensus 334 S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~~~~~~~~~~~~~~~~~~~~ 406 (406)
|.|++|+|+++++++..+|++++++||++.++++|++|++++++|+|+|++.++++++|||+||||+||+||+
T Consensus 330 S~Iv~P~G~vla~~~~~~E~llvadIDl~~v~~~R~~~~~~~~rR~~ly~~~~~~~~~~~~~~~~~~~~~~~~ 402 (405)
T PLN00202 330 SHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYEMYADFFAEYLKPDFKPQVISDPLLHK 402 (405)
T ss_pred eEEEcCCCCEeccCCCCCCcEEEEEeCHHHHHHHHHhCCcccccCHhHHHHHHHhhcCCCCCCccccCccccc
Confidence 9999999999998877789999999999999999999999999999999999999999999999999999974
No 3
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=2.7e-83 Score=642.67 Aligned_cols=361 Identities=72% Similarity=1.220 Sum_probs=339.5
Q ss_pred HHHHHHcCCCchhHhhhhhhhccCCCCCCccccccccchhhhhhcCCceEeeeeecccccccCCCCccEEEEEecccCCC
Q 041243 24 LHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLP 103 (406)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vrValiQ~~i~~~ 103 (406)
||++|++|||+++|+|||||||| +++++|+||+++.++|.+++|||+||+|+|++||+|+|+.||||++|+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIAlvQ~~~~~~ 76 (363)
T cd07587 1 LEDLLEKHLPPEELKEVKRILYG----EEVKPLELPESALDLAKENDFELKGYKFEAAPEQTRPPRIVRVGLIQNKIVLP 76 (363)
T ss_pred ChhHHhhhCCHHHHHHHHHHHcC----CCCccCCCCHHHHHHHHhcCceEEEeecCCChhhcCCCceEEEEEEecccccc
Confidence 68999999999999999999999 88999999999999999999999999999999999999999999999999988
Q ss_pred CcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchh-HHhhhcCCC-CcHHHHHHHHHHHhcCcEEEe
Q 041243 104 TTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREK-RWCEFAEPV-DGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 104 ~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~-~~~~~ae~~-~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
+.+|+.+|.++|++++.++++.|+++|||||||||+|++||.+++++. .|.++++.. .+++++.|+++|++++|+|++
T Consensus 77 ~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~ 156 (363)
T cd07587 77 TTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVS 156 (363)
T ss_pred ccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEEE
Confidence 888999999999999999999999999999999999999998876543 377788776 478999999999999999999
Q ss_pred eceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEeccCCcchHHHHH
Q 041243 182 PILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLA 261 (406)
Q Consensus 182 G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICyD~~~Pe~~~~ 261 (406)
|+.+++..+++++|||+++|+++|+++++|||+||+++++|.|+.+|.+|+.+++||+++++|||++||||++||++++.
T Consensus 157 gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~griG~~ICyD~~fPe~~r~ 236 (363)
T cd07587 157 PILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKIAVNICYGRHHPLNWLM 236 (363)
T ss_pred eeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceEEEEEecccCCcHHHHH
Confidence 99988643346899999999999999999999999998899999999999976899999999999999999999999999
Q ss_pred HHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccceeeEEECCCC
Q 041243 262 FGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDG 341 (406)
Q Consensus 262 ~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G 341 (406)
++++|||||++|++|....+..+|..++++||+||++||+++|++|.+.+|+.+++++|+++|++...|+|+|+|++|+|
T Consensus 237 la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~~~~f~G~S~Ii~P~G 316 (363)
T cd07587 237 YGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDG 316 (363)
T ss_pred HHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEeccccccccccccccccccccccccccccceeEEECCCC
Confidence 99999999999999987666679999999999999999999999999999999999999999988888999999999999
Q ss_pred CeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHhc
Q 041243 342 SCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLAN 388 (406)
Q Consensus 342 ~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~~ 388 (406)
+++++++..+|++++++||++.++++|++|++++++|+|+|++++++
T Consensus 317 ~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~~~~~ 363 (363)
T cd07587 317 SRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYADFLAK 363 (363)
T ss_pred CCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHHHhcC
Confidence 99998877889999999999999999999999999999999998863
No 4
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=6e-52 Score=403.63 Aligned_cols=284 Identities=51% Similarity=0.868 Sum_probs=247.8
Q ss_pred CCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCC-CcHHHH
Q 041243 88 PRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-DGESTQ 166 (406)
Q Consensus 88 ~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~-~~~~~~ 166 (406)
+|+||||++|+++..+...+++++.++|++++.++++.|+++|+|||||||+|++||........+.+.++.. .+++++
T Consensus 1 ~~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
T cd07568 1 SRIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTK 80 (287)
T ss_pred CceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHH
Confidence 4789999999998754433446899999999999999999999999999999999984322222344555554 578999
Q ss_pred HHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEE
Q 041243 167 FLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIA 246 (406)
Q Consensus 167 ~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkig 246 (406)
.|+++|++++++|++|+.+++. ++++||++++|+++|+++++|+|.||+++++|.|..+|.+|+.+..+|+++++|||
T Consensus 81 ~l~~~a~~~~i~ii~g~~~~~~--~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG 158 (287)
T cd07568 81 RFAALAKEYNMVLILPIYEKEQ--GGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIG 158 (287)
T ss_pred HHHHHHHHCCEEEEEEeEEEcC--CCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEE
Confidence 9999999999999999988753 46899999999999999999999999999989999999999855899999999999
Q ss_pred EEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q 041243 247 VNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKD 326 (406)
Q Consensus 247 v~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~ 326 (406)
++||||.+||++++.++.+|||||++|+++........|...+++||++|++|++.+|++|... +. +
T Consensus 159 ~~ICyD~~fpe~~r~la~~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~---------~~----~ 225 (287)
T cd07568 159 VYICYDRHFPEGWRALGLNGAEIVFNPSATVAGLSEYLWKLEQPAAAVANGYFVGAINRVGTEA---------PW----N 225 (287)
T ss_pred EEEEecccCchHHHHHHHCCCeEEEECCcCCCCCchhhhHHHHHHHHHHCCcEEEEeccccccC---------CC----c
Confidence 9999999999999999999999999999987655556899889999999999999999999752 10 0
Q ss_pred CcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHH
Q 041243 327 FGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEML 386 (406)
Q Consensus 327 ~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~ 386 (406)
...|+|.|.|++|+|+++++++..++++++++||++.+++.|.+++++.++|+++|..++
T Consensus 226 ~~~~~G~S~ii~p~G~il~~~~~~~~~~l~a~id~~~~~~~R~~~~~~~~~r~~~y~~~~ 285 (287)
T cd07568 226 IGEFYGSSYFVDPRGQFVASASRDKDELLVAELDLDLIREVRDTWQFYRDRRPETYGELT 285 (287)
T ss_pred cceEeceeEEECCCceEEEecCCCCCeEEEEEecHHHHHHHHhhCchhhhcCHHHhHHhh
Confidence 136889999999999999998888899999999999999999999999999999998754
No 5
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=7.2e-51 Score=393.88 Aligned_cols=270 Identities=30% Similarity=0.525 Sum_probs=234.5
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCC-cHHHHHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD-GESTQFLQ 169 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~-~~~~~~l~ 169 (406)
||||++|+++. ++.++|++++.++++.|+++|+|||||||+|++||........+.+.++... +++++.|+
T Consensus 1 ~~ia~~Q~~~~--------~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~ 72 (279)
T TIGR03381 1 VTVAALQMACS--------DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQ 72 (279)
T ss_pred CEEEEEEeecc--------CCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHH
Confidence 79999999853 6899999999999999999999999999999999953222222344454433 57899999
Q ss_pred HHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEe
Q 041243 170 ELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNI 249 (406)
Q Consensus 170 ~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~I 249 (406)
++|++++++|++|+.+++ ++++||++++|+++|+++++|+|.|||..+.+.|..+|.+|+..+++|+++++|||++|
T Consensus 73 ~~a~~~~i~i~~g~~~~~---~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~I 149 (279)
T TIGR03381 73 ALAKELGVVIPVSFFEKA---GNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGI 149 (279)
T ss_pred HHHHHcCcEEEEeeeecC---CCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEE
Confidence 999999999999998875 56899999999999999999999999875567788899999865899999999999999
Q ss_pred ccCCcchHHHHHHHHCCCcEEEEcCCCCCC------CCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCC
Q 041243 250 CYGRHHPLNWLAFGLNGAEIVFNPSATVGE------LSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQ 323 (406)
Q Consensus 250 CyD~~~Pe~~~~~~~~Gadii~~Psa~~~~------~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~ 323 (406)
|||.+||++++.++++|||+|++|++|... .+...|..+.++||+||++|+++||++|.+... +++
T Consensus 150 C~D~~fpe~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~-----~~~--- 221 (279)
T TIGR03381 150 CWDQWFPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGD-----GGE--- 221 (279)
T ss_pred EcCCcChHHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCCC-----CCc---
Confidence 999999999999999999999999997532 234589889999999999999999999986310 011
Q ss_pred CCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHH
Q 041243 324 HKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYA 383 (406)
Q Consensus 324 ~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~ 383 (406)
..|+|.|+|++|+|+++++++..++++++++||++.++.+|..++++.++|+++|+
T Consensus 222 ----~~~~G~S~i~~p~G~il~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~r~~~y~ 277 (279)
T TIGR03381 222 ----QTFYGSSFIADHTGELVAEAGRSEEAVLVATFDLDEIAKQRAAWGFFRDRRPELYG 277 (279)
T ss_pred ----ceEeeeEEEECCCCcEeecCCCCCCceEEEEeCHHHHHHHHhcCchhhhCChhhcc
Confidence 46899999999999999998888899999999999999999999999999999996
No 6
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=2.1e-49 Score=388.30 Aligned_cols=280 Identities=26% Similarity=0.361 Sum_probs=233.3
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCc-------chhHHh---hhcCCC
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCT-------REKRWC---EFAEPV 160 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~-------~~~~~~---~~ae~~ 160 (406)
||||++|+++. ++|.+.|++++.++++.|+++|+|||||||+|++||.... ....+. +.+...
T Consensus 1 ~kia~~Q~~~~-------~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (297)
T cd07564 1 VKVAAVQAAPV-------FLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEV 73 (297)
T ss_pred CEEEEEecCcc-------cCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCC
Confidence 79999999753 4789999999999999999999999999999999996411 011222 233344
Q ss_pred CcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCC-CCceEE
Q 041243 161 DGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNT-GHPVFE 239 (406)
Q Consensus 161 ~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~-~~~vf~ 239 (406)
.+++++.|+++|++++++|++|+.+++ ++++||++++|+++|+++++|+|.|++. .|..+|.+|+. .+++|+
T Consensus 74 ~~~~~~~l~~~a~~~~i~iv~G~~~~~---~~~~yNs~~vi~~~G~i~~~y~K~~l~~----~E~~~~~~g~~~~~~v~~ 146 (297)
T cd07564 74 DGPELERLAEAARENGIYVVLGVSERD---GGTLYNTQLLIDPDGELLGKHRKLKPTH----AERLVWGQGDGSGLRVVD 146 (297)
T ss_pred CCHHHHHHHHHHHHcCcEEEEeeEecc---CCceEEEEEEEcCCCCEeeeeeccCCCc----hhhhhcccCCCCCceEEe
Confidence 578999999999999999999998875 5689999999999999999999999763 68889999873 368999
Q ss_pred cCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCC--CCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCC-CCCCCC
Q 041243 240 TAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSAT--VGELSEPMWPIEARNAAIANSYFVGSINRVGTEV-FPNPFT 316 (406)
Q Consensus 240 t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~--~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~-~~~~~~ 316 (406)
++++|||++||||++||++++.++++||+|+++|++. ....+..+|..++++||+||++|+++||++|.+. .+..++
T Consensus 147 ~~~~kig~~ICyD~~fPe~~r~~a~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~ 226 (297)
T cd07564 147 TPIGRLGALICWENYMPLARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCE 226 (297)
T ss_pred cCCceEEEEEEhhcCCHHHHHHHHHCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEcccccChhHcccccc
Confidence 9999999999999999999999999999999997763 3334567999999999999999999999999753 122221
Q ss_pred CCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCcc-CchHHHHHHH
Q 041243 317 SGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMT-ARYELYAEML 386 (406)
Q Consensus 317 ~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~-~r~dlY~~~~ 386 (406)
+. + +.+.+...++|.|.|++|+|+++++++..++++++++||++.++++|..+++..+ +|+|+|....
T Consensus 227 ~~-~-~~~~~~~~~~G~S~iv~P~G~il~~~~~~~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~~~~ 295 (297)
T cd07564 227 DD-E-EADPLEVLGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFSLTV 295 (297)
T ss_pred cc-c-ccccccccCCCceEEECCCCCeecCCCCCCceEEEEEecHHHHHHHHhcCCCCCCCCCchhhceee
Confidence 10 1 1122335689999999999999999887899999999999999999999999988 6999997543
No 7
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=5.1e-49 Score=385.08 Aligned_cols=284 Identities=29% Similarity=0.447 Sum_probs=241.0
Q ss_pred CCCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCC-cHH
Q 041243 86 REPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD-GES 164 (406)
Q Consensus 86 ~~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~-~~~ 164 (406)
-+.++||||++|.++. ++.++|++++.++++.|+++|+|||||||+|++||........+.+.++... +++
T Consensus 2 ~~~~~~~va~~Q~~~~--------~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~ 73 (296)
T PLN02747 2 GMGRKVVVAALQFACS--------DDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPT 73 (296)
T ss_pred CCCcceEEEEEEecCC--------CCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChH
Confidence 3567899999999853 6899999999999999999999999999999999853211122333444333 478
Q ss_pred HHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCce
Q 041243 165 TQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGK 244 (406)
Q Consensus 165 ~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gk 244 (406)
++.|+++|++++++|++|+.++. ++++||++++|+++|+++++|+|.|||..+.+.|..+|.+|+..+++|+++++|
T Consensus 74 ~~~l~~~a~~~~i~i~~g~~~~~---~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~r 150 (296)
T PLN02747 74 IARMQKLAKELGVVIPVSFFEEA---NNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAK 150 (296)
T ss_pred HHHHHHHHHHcCeEEEeeeeecC---CCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCcc
Confidence 89999999999999999998775 678999999999999999999999998655667888999998558999999999
Q ss_pred EEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCC------CCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCC
Q 041243 245 IAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGE------LSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSG 318 (406)
Q Consensus 245 igv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~------~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~ 318 (406)
||++||||.+||++++.++.+||++|++|++|... .+..+|..+.++||++|++||+.+|++|.+..+...
T Consensus 151 ig~~IC~D~~fpe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~--- 227 (296)
T PLN02747 151 IGVAICWDQWFPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEILETEH--- 227 (296)
T ss_pred EEEEEEccccchHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEeccccccccccc---
Confidence 99999999999999999999999999999997432 123579999999999999999999999986433221
Q ss_pred CCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHhc
Q 041243 319 DGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLAN 388 (406)
Q Consensus 319 ~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~~ 388 (406)
|. ....|+|.|+|++|+|+++++.+..++++++++||++.++..|..+++..++|+++|+.+++.
T Consensus 228 -g~----~~~~~~G~S~i~~p~G~vl~~~~~~~e~~~~adid~~~~~~~r~~~~~~~~~r~~~~~~~~~~ 292 (296)
T PLN02747 228 -GP----SKITFYGGSFIAGPTGEIVAEADDKAEAVLVAEFDLDQIKSKRASWGVFRDRRPDLYKVLLTL 292 (296)
T ss_pred -CC----cCceEeeeeEEECCCCCEeecCCCCCCcEEEEEEcHHHHHHHHHhCCchhhcChhHHHHHHhh
Confidence 11 014789999999999999999887788999999999999999999999999999999976643
No 8
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=3.6e-48 Score=380.32 Aligned_cols=275 Identities=25% Similarity=0.388 Sum_probs=231.5
Q ss_pred CccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCC---CcchhHHhhhcCC-CCcHH
Q 041243 89 RVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAF---CTREKRWCEFAEP-VDGES 164 (406)
Q Consensus 89 ~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~---~~~~~~~~~~ae~-~~~~~ 164 (406)
|+||||++|++... ...+.++|++++.++++.|+++|+|||||||+|++||.. +........+.+. ..++.
T Consensus 2 ~~~rva~~Q~~~~~-----~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (302)
T cd07569 2 RQVILAAAQMGPIA-----RAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPE 76 (302)
T ss_pred ceEEEEEEeecccc-----ccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChh
Confidence 57999999997542 123789999999999999999999999999999999842 2222222233333 44678
Q ss_pred HHHHHHHHHhcCcEEEeeceeeccCCCC---eeEEEEEEEcCCCcEEEeeeccCCCCCCCC--------CcccceecCCC
Q 041243 165 TQFLQELARKYNMVIISPILERDVNHGD---TIWNTAIIIGNHGNIIGKHRKNHIPRVGDF--------NESTYYMEGNT 233 (406)
Q Consensus 165 ~~~l~~lAkk~~i~Iv~G~~e~~~~~~~---~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f--------~E~~~~~~G~~ 233 (406)
++.|+++|+++++.|++|+.++.. ++ ++||++++|+++|+++++|+|+||++++++ .|..+|.+|+.
T Consensus 77 ~~~l~~~a~~~~i~iv~G~~~~~~--~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~ 154 (302)
T cd07569 77 TQPLFDRAKELGIGFYLGYAELTE--DGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDL 154 (302)
T ss_pred HHHHHHHHHHhCeEEEEeceeecC--CCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCC
Confidence 999999999999999999987643 33 799999999999999999999999987653 47788999994
Q ss_pred CCceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCC---------CcCcHHHHHHHHHHHcCcEEEEEC
Q 041243 234 GHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGEL---------SEPMWPIEARNAAIANSYFVGSIN 304 (406)
Q Consensus 234 ~~~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~---------~~~~w~~~~r~rAien~~~vv~aN 304 (406)
.+++|+++++|||++||||.+||++++.++.+|||||++|+++.... ....|...+++||+||++|++++|
T Consensus 155 ~~~v~~~~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n 234 (302)
T cd07569 155 GFPVFRVPGGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAA 234 (302)
T ss_pred CCceEecCCceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEee
Confidence 48999999999999999999999999999999999999987753211 123677788999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhh-cCCCccCchHHHH
Q 041243 305 RVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDK-WGFRMTARYELYA 383 (406)
Q Consensus 305 ~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~-~~~~~~~r~dlY~ 383 (406)
++|.+. | ..|+|+|.|++|+|+++++++...+++++++||++.++..|.. +++.+++|+|+|+
T Consensus 235 ~~G~~~---------~-------~~~~G~S~ii~p~G~vla~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~r~~~y~ 298 (302)
T cd07569 235 KAGMED---------G-------CDLIGGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFARHRRPEHYG 298 (302)
T ss_pred ccccCC---------C-------ceEecceEEECCCCCEEEecCCCCCcEEEEEecHHHhhhcccccCcchhhcCHHHHh
Confidence 999852 2 4689999999999999999887789999999999999999995 8999999999998
Q ss_pred HHH
Q 041243 384 EML 386 (406)
Q Consensus 384 ~~~ 386 (406)
.++
T Consensus 299 ~~~ 301 (302)
T cd07569 299 LIA 301 (302)
T ss_pred hhh
Confidence 653
No 9
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=1.7e-47 Score=371.48 Aligned_cols=274 Identities=33% Similarity=0.572 Sum_probs=236.9
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcC-CCCcHHHHHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAE-PVDGESTQFLQ 169 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae-~~~~~~~~~l~ 169 (406)
||||++|+++. ++.+.|++++.++++.|++.|+|||||||++++||........+...++ ...+++++.++
T Consensus 1 ~~ia~~Q~~~~--------~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 72 (284)
T cd07573 1 VTVALVQMACS--------EDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQ 72 (284)
T ss_pred CEEEEEEeecc--------CCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHH
Confidence 79999999864 6889999999999999999999999999999999954322222334444 44567899999
Q ss_pred HHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEe
Q 041243 170 ELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNI 249 (406)
Q Consensus 170 ~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~I 249 (406)
++|++++++|++|+.++.. ++++||++++|+++|+++++|+|.|||..+.+.|..+|.+|+.++++|+++++|+|++|
T Consensus 73 ~la~~~~i~iv~g~~~~~~--~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I 150 (284)
T cd07573 73 ALAKELGVVIPVSLFEKRG--NGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLI 150 (284)
T ss_pred HHHHHCCEEEEecceeeCC--CCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEE
Confidence 9999999999999988763 46899999999999999999999999876567788899999855899999999999999
Q ss_pred ccCCcchHHHHHHHHCCCcEEEEcCCCCCC--------CCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCC
Q 041243 250 CYGRHHPLNWLAFGLNGAEIVFNPSATVGE--------LSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGK 321 (406)
Q Consensus 250 CyD~~~Pe~~~~~~~~Gadii~~Psa~~~~--------~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~ 321 (406)
|||.+||++++.++.+|||+|++|+++... .....|..+.++||+||++|++++|++|.+..+. ++
T Consensus 151 C~D~~fpe~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~-----~~- 224 (284)
T cd07573 151 CWDQWFPEAARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPG-----SG- 224 (284)
T ss_pred eccccchHHHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCCCC-----CC-
Confidence 999999999999999999999999997431 1235788889999999999999999999853210 11
Q ss_pred CCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHH
Q 041243 322 PQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEML 386 (406)
Q Consensus 322 ~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~ 386 (406)
..|+|+|+|++|+|+++++++.+++++++++||++.++.+|..|++..++|+++|+.+.
T Consensus 225 ------~~~~G~S~i~~p~G~i~~~~~~~~~~v~~a~id~~~~~~~r~~~~~~~~~~~~~~~~~~ 283 (284)
T cd07573 225 ------ITFYGSSFIADPFGEILAQASRDEEEILVAEFDLDEIEEVRRAWPFFRDRRPDLYGALT 283 (284)
T ss_pred ------ceeeceeEEECCCCCeeeccCCCCCcEEEEEecHHHHHHHHhhChhhhhcChhhhhhhh
Confidence 47899999999999999999888899999999999999999999999999999998643
No 10
>PLN02504 nitrilase
Probab=100.00 E-value=1.3e-47 Score=382.72 Aligned_cols=284 Identities=26% Similarity=0.369 Sum_probs=233.7
Q ss_pred CCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCc--c----------hhH---
Q 041243 88 PRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCT--R----------EKR--- 152 (406)
Q Consensus 88 ~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~--~----------~~~--- 152 (406)
.++||||++|.++. ..+.++|++++.++++.|+++|+|||||||+|++||.... . ...
T Consensus 22 ~~~~kiAlvQ~~~~-------~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
T PLN02504 22 SSTVRATVVQASTV-------FYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRK 94 (346)
T ss_pred CCceEEEEEEcCcc-------cCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHH
Confidence 35799999999865 3678999999999999999999999999999999995310 0 011
Q ss_pred HhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCC
Q 041243 153 WCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGN 232 (406)
Q Consensus 153 ~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~ 232 (406)
+.+.+...++++++.|+++|++++++|++|+.++. ++++||++++|+++|+++++|+|.|+.. .|+.+|.+|.
T Consensus 95 ~~~~a~~~~g~~i~~l~~~A~~~~i~iv~G~~e~~---~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~ 167 (346)
T PLN02504 95 YHASAIDVPGPEVDRLAAMAGKYKVYLVMGVIERD---GYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGD 167 (346)
T ss_pred HHHhcccCCCHHHHHHHHHHHHcCCEEEEeeeecC---CCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCC
Confidence 22334445688999999999999999999998875 5789999999999999999999999754 5888999887
Q ss_pred C-CCceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCC-
Q 041243 233 T-GHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEV- 310 (406)
Q Consensus 233 ~-~~~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~- 310 (406)
. .+++|+++++|||++||||.+||+++|.++++|||||++|+++. ...|...+++||+||++||+++|++|...
T Consensus 168 g~~~~vf~~~~griG~lICyD~~fPe~~r~la~~Gadii~~p~~~~----~~~w~~~~rarA~En~~~Vv~aN~vg~~~~ 243 (346)
T PLN02504 168 GSTIPVYDTPIGKIGAVICWENRMPLLRTAMYAKGIEIYCAPTADS----RETWQASMRHIALEGGCFVLSANQFCRRKD 243 (346)
T ss_pred CCCCceEEcCCceEEEEEeccchhHHHHHHHHHCCCeEEEECCCCC----chhHHHHHHHHHHccCcEEEEecccccccc
Confidence 3 47899999999999999999999999999999999999999874 36899999999999999999999998532
Q ss_pred CCCCCC---CCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccC-chHHHHHHH
Q 041243 311 FPNPFT---SGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTA-RYELYAEML 386 (406)
Q Consensus 311 ~~~~~~---~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~-r~dlY~~~~ 386 (406)
+++-.. .|.......+...|+|+|+|++|+|+++++....++++++++||++.++..|..+++..+. |+|+|+..+
T Consensus 244 ~~~~~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~~ 323 (346)
T PLN02504 244 YPPPPEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLTV 323 (346)
T ss_pred cCcccccccccccccccccccccCcceEEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEEE
Confidence 111000 0000000112356899999999999999887666789999999999999999999988875 999998877
Q ss_pred hcc
Q 041243 387 ANY 389 (406)
Q Consensus 387 ~~~ 389 (406)
++.
T Consensus 324 ~~~ 326 (346)
T PLN02504 324 NEH 326 (346)
T ss_pred cCC
Confidence 665
No 11
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=7.9e-47 Score=369.15 Aligned_cols=269 Identities=24% Similarity=0.329 Sum_probs=227.9
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhh--CCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGV--SGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFL 168 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~--~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l 168 (406)
++||++|+++... ...++.++|++++.++++.|++ .|+|||||||+|++||.+.. ..+.++++...+++++.|
T Consensus 1 ~~Ia~~Q~~~~~~---~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~--~~~~~~a~~~~~~~~~~l 75 (291)
T cd07565 1 VGVAVVQYKVPVL---HTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDK--WTMDETACTVPGPETDIF 75 (291)
T ss_pred CeEEEEecccccc---cccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCc--chhhhhccCCCChhHHHH
Confidence 5899999987321 1247899999999999999986 59999999999999996522 123456666668899999
Q ss_pred HHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcC-CceEEE
Q 041243 169 QELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETA-FGKIAV 247 (406)
Q Consensus 169 ~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~-~gkigv 247 (406)
+++|++++++|++|+.+++...++++||++++|+++|+++++|||+|++. +..+|.+|+..+++|++. ++|||+
T Consensus 76 ~~lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~~v~~~~~g~riG~ 150 (291)
T cd07565 76 AEACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGTPVCEGPKGSKIAL 150 (291)
T ss_pred HHHHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCceeeECCCCCEEEE
Confidence 99999999999999988763212689999999999999999999999853 234578998657899986 559999
Q ss_pred EeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q 041243 248 NICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDF 327 (406)
Q Consensus 248 ~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~ 327 (406)
+||||.+||+++|.++++|||+|++|++|... ...+|...+++||+||++|+++||++|.+. |
T Consensus 151 ~ICyD~~fPe~~r~la~~GAdill~ps~~~~~-~~~~w~~~~~aRA~En~~~vv~aN~~G~~~---------~------- 213 (291)
T cd07565 151 IICHDGMYPEIARECAYKGAELIIRIQGYMYP-AKDQWIITNKANAWCNLMYTASVNLAGFDG---------V------- 213 (291)
T ss_pred EEEcCCCCcHHHHHHHHCCCeEEEECCcCCCC-cchHHHHHHHHHHHhcCcEEEEecccccCC---------C-------
Confidence 99999999999999999999999999998754 346899999999999999999999999852 2
Q ss_pred cccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHhccc
Q 041243 328 GHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYS 390 (406)
Q Consensus 328 ~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~~~~ 390 (406)
..|+|+|.|++|+|+++++++..++++++++||++.++..|..+++ |.|||+....-|+
T Consensus 214 ~~~~G~S~ivdP~G~ila~~~~~~e~i~~adid~~~~~~~R~~~~~----~~~~~~~~~~~~~ 272 (291)
T cd07565 214 FSYFGESMIVNFDGRTLGEGGREPDEIVTAELSPSLVRDARKNWGS----ENNLYKLGHRGYV 272 (291)
T ss_pred ceeeeeeEEECCCCCEEEeCCCCCCcEEEEEEcHHHHHHHHhcCCC----CCcHHHhhhhhhh
Confidence 4689999999999999999887788999999999999999999988 5589987665553
No 12
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.8e-47 Score=367.30 Aligned_cols=259 Identities=34% Similarity=0.497 Sum_probs=224.1
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcC-CCCcHHHHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAE-PVDGESTQFLQE 170 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae-~~~~~~~~~l~~ 170 (406)
|||++|+++. .++.+.|++++.++++.|+++|+|||||||++++||.+.... ...++++ ...++.++.+++
T Consensus 1 ria~~Q~~~~-------~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 72 (268)
T cd07580 1 RVACVQFDPR-------VGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRD-EAFALAEEVPDGASTRAWAE 72 (268)
T ss_pred CEEEEEccCc-------cCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHH-HHHHhhccCCCCchHHHHHH
Confidence 6999999865 378999999999999999999999999999999999654321 1222332 223668899999
Q ss_pred HHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEec
Q 041243 171 LARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNIC 250 (406)
Q Consensus 171 lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~IC 250 (406)
+|++++++|++|+.+++ ++++||++++|+++|. +++|+|.||+. .|..+|.+|+.++++|+++++|||++||
T Consensus 73 ~a~~~~~~i~~G~~~~~---~~~~yNs~~vi~~~g~-~~~y~K~~l~~----~e~~~f~~G~~~~~v~~~~~~~ig~~IC 144 (268)
T cd07580 73 LAAELGLYIVAGFAERD---GDRLYNSAVLVGPDGV-IGTYRKAHLWN----EEKLLFEPGDLGLPVFDTPFGRIGVAIC 144 (268)
T ss_pred HHHHcCcEEEeeccccc---CCceEEEEEEECCCCc-EEEEEEecCCc----hhcceecCCCCCCceEEcCCCcEEEEEE
Confidence 99999999999988765 5689999999999995 89999999986 5888999999768999999999999999
Q ss_pred cCCcchHHHHHHHHCCCcEEEEcCCCCCCCC-----cCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCC
Q 041243 251 YGRHHPLNWLAFGLNGAEIVFNPSATVGELS-----EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHK 325 (406)
Q Consensus 251 yD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~-----~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~ 325 (406)
||++||++++.++.+|||+|++|++|....+ ..+|....++||+||++|+++||++|.+. |
T Consensus 145 ~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~---------~----- 210 (268)
T cd07580 145 YDGWFPETFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTER---------G----- 210 (268)
T ss_pred CcccchHHHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeecc---------C-----
Confidence 9999999999999999999999999864433 25788889999999999999999999862 2
Q ss_pred CCcccceeeEEECCCCCeeccCCC-CCceEEEEEeehhHHHHHHhh--cCCCccCchHHH
Q 041243 326 DFGHFYGSSHFSAPDGSCTPSLSR-FRDGLLISDMDLNLCRQLKDK--WGFRMTARYELY 382 (406)
Q Consensus 326 ~~~~~~G~S~Ii~P~G~i~~~~~~-~~e~llvaeidl~~~~~~r~~--~~~~~~~r~dlY 382 (406)
..|+|+|+|++|+|.++.+++. .++++++++||++.++.+|.. ++++.++|+++|
T Consensus 211 --~~~~G~S~ii~p~G~~~~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~r~~~y 268 (268)
T cd07580 211 --QPFIGQSLIVGPDGWPLAGPASGDEEEILLADIDLTAARRKRIWNSNDVLRDRRPDLY 268 (268)
T ss_pred --ceEeeeeEEECCCCCeeeecCCCCCCeEEEEEecHHHHHHhhcCCcchhhhhcCcccC
Confidence 3688999999999999988764 488999999999999999988 488999999987
No 13
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=1.3e-46 Score=361.25 Aligned_cols=252 Identities=19% Similarity=0.288 Sum_probs=214.1
Q ss_pred ccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCC-CcHHHHHH
Q 041243 90 VVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-DGESTQFL 168 (406)
Q Consensus 90 ~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~-~~~~~~~l 168 (406)
+||||++|+++. .+|.++|++++.++++.| +|+|||||||+|++||.+.. ..+.. .+++.+.|
T Consensus 3 ~mkia~~Q~~~~-------~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~-------~~~~~~~~~~~~~l 66 (256)
T PRK10438 3 GLKITLLQQPLV-------WMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEA-------AASSLPQDDVVAWM 66 (256)
T ss_pred CCEEEEEEecCc-------cCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccc-------hhhccccchHHHHH
Confidence 499999999864 478999999999999875 69999999999999996421 11111 25688999
Q ss_pred HHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEE
Q 041243 169 QELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVN 248 (406)
Q Consensus 169 ~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ 248 (406)
+++|+++++.|++++.++. ++.+|||+++|+++|. ++.|+|.||+++ +.|..+|.+|+. .++|+++++|||++
T Consensus 67 ~~~A~~~~~~i~g~~~~~~---~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~iG~~ 139 (256)
T PRK10438 67 TAKAQQTNALIAGSVALQT---ESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNA-RVIVEWRGWRILPL 139 (256)
T ss_pred HHHHHHcCeEEEEEEEEec---CCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCC-ceEEEECCEEEEEE
Confidence 9999999986554443443 4568999999999998 679999999753 468889999986 89999999999999
Q ss_pred eccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCc
Q 041243 249 ICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFG 328 (406)
Q Consensus 249 ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~ 328 (406)
||||++||+++|.+ +|||+|++|++|+.. ....|..+.++||+||++|+++||++|.+. +| .
T Consensus 140 ICyD~~fPe~~r~l--~gad~i~~~s~~~~~-~~~~~~~~~~aRA~En~~~vv~~n~~G~~~--------~~-------~ 201 (256)
T PRK10438 140 VCYDLRFPVWSRNR--NDYDLALYVANWPAP-RSLHWQTLLTARAIENQAYVAGCNRVGSDG--------NG-------H 201 (256)
T ss_pred EEeecCCHHHHHhh--cCCCEEEEecCCCCC-chHHHHHHHHHHHHhcCcEEEEecccccCC--------CC-------C
Confidence 99999999999985 899999999998765 345799999999999999999999999852 12 4
Q ss_pred ccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHH
Q 041243 329 HFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELY 382 (406)
Q Consensus 329 ~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY 382 (406)
.|+|.|.|++|+|+++++++..++++++++||++.++++|..++++.++|+..|
T Consensus 202 ~~~G~S~ivdP~G~vl~~~~~~~e~~i~~~idl~~~~~~R~~~~~l~~r~~~~~ 255 (256)
T PRK10438 202 HYRGDSRIINPQGEIIATAEPHQATRIDAELSLEALQEYREKFPAWRDADEFTL 255 (256)
T ss_pred EEcCceEEECCCCcEEEEcCCCCcEEEEEEECHHHHHHHHHhCCccccCChhhc
Confidence 689999999999999999887889999999999999999999999988876554
No 14
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.8e-47 Score=367.09 Aligned_cols=248 Identities=21% Similarity=0.317 Sum_probs=211.6
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQEL 171 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~l 171 (406)
|||++|+++. .+.++|++++.++++.|+++|+|||||||++++||... ...++...++.++.|+++
T Consensus 1 ria~~Q~~~~--------~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~------~~~~~~~~~~~~~~l~~l 66 (279)
T cd07579 1 RIAVAQFAPT--------PDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDP------ASEAESDTGPAVSALRRL 66 (279)
T ss_pred CEEEEeccCc--------cCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCCh------HHhcccCCCHHHHHHHHH
Confidence 6999999864 48999999999999999999999999999999998531 123444457899999999
Q ss_pred HHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEecc
Q 041243 172 ARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICY 251 (406)
Q Consensus 172 Akk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICy 251 (406)
|++++++|++|++++. ++++||++++|+++| ++++|+|.||++ .|..+|.+|+. +++|+++++|||++|||
T Consensus 67 A~~~~i~iv~G~~~~~---~~~~yNs~~vi~~~G-~i~~Y~K~hL~~----~E~~~f~~G~~-~~v~~~~~~kiG~~ICy 137 (279)
T cd07579 67 ARRLRLYLVAGFAEAD---GDGLYNSAVLVGPEG-LVGTYRKTHLIE----PERSWATPGDT-WPVYDLPLGRVGLLIGH 137 (279)
T ss_pred HHHcCeEEEEeceEcc---CCcEEEEEEEEeCCe-eEEEEecccCCC----cchhhccCCCC-CeeEEcCceeEEEEEec
Confidence 9999999999998876 567999999999999 689999999986 58889999996 89999999999999999
Q ss_pred CCcchHHHHHHHHCCCcEEEEcCCCCC-----------------CCC--cCcHHHHHHHHHHHcCcEEEEECCCCCCCCC
Q 041243 252 GRHHPLNWLAFGLNGAEIVFNPSATVG-----------------ELS--EPMWPIEARNAAIANSYFVGSINRVGTEVFP 312 (406)
Q Consensus 252 D~~~Pe~~~~~~~~Gadii~~Psa~~~-----------------~~~--~~~w~~~~r~rAien~~~vv~aN~~G~~~~~ 312 (406)
|++||+++|.++++|||||++|++|.. ..+ ..+|. ++++||+||++|+++||++|.+
T Consensus 138 D~~fPe~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~~--- 213 (279)
T cd07579 138 DALFPEAGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDPA--- 213 (279)
T ss_pred cccCcHHHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCCc---
Confidence 999999999999999999999999742 111 14777 5899999999999999999874
Q ss_pred CCCCCCCCCCCCCCCcccceeeEEECCCCCeeccC---CCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHH
Q 041243 313 NPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSL---SRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAE 384 (406)
Q Consensus 313 ~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~---~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~ 384 (406)
..+.|.|.|++|+|.+++.. ...+|++++++||++.++. +++++.+||+|+|+.
T Consensus 214 ---------------~~~~G~S~ii~P~G~v~~~~~~~~~~~e~~l~a~id~~~~~~---~~~~~~~rr~~~~~~ 270 (279)
T cd07579 214 ---------------RGYTGWSGVFGPDTFAFPRQEAAIGDEEGIAWALIDTSNLDS---RYPTNVVRRKDLVRM 270 (279)
T ss_pred ---------------cccccccEEECCCeEEcchhhcccCCCCcEEEEEecchhhcc---cCCchhhhhHHHHHh
Confidence 24689999999999997431 2356889999999999876 577777888887753
No 15
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.3e-46 Score=357.62 Aligned_cols=253 Identities=30% Similarity=0.494 Sum_probs=222.9
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQEL 171 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~l 171 (406)
|||++|+++. ..+.+.|++++.++++.|+++|+|||||||++++||.... .+ ..+....+++++.|+++
T Consensus 1 rva~~Q~~~~-------~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~---~~-~~~~~~~~~~~~~l~~~ 69 (253)
T cd07583 1 KIALIQLDIV-------WGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDD---LY-ELADEDGGETVSFLSEL 69 (253)
T ss_pred CEEEEEeecC-------cCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhh---HH-hhhcccCchHHHHHHHH
Confidence 6999999876 2789999999999999999999999999999999995421 11 12344457899999999
Q ss_pred HHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEecc
Q 041243 172 ARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICY 251 (406)
Q Consensus 172 Akk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICy 251 (406)
|++++++|++|+.+... ++++||++++|+++|+++++|+|.||+++ +.|..+|.+|+. +++|+++++|||++|||
T Consensus 70 a~~~~~~iv~G~~~~~~--~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~-~~v~~~~~~rig~~IC~ 144 (253)
T cd07583 70 AKKHGVNIVAGSVAEKE--GGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDE-LEVFELDGGKVGLFICY 144 (253)
T ss_pred HHHcCcEEEeceEEecC--CCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCC-ceEEEeCCeEEEEEEEe
Confidence 99999999999764332 57899999999999999999999999875 368889999996 89999999999999999
Q ss_pred CCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 041243 252 GRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFY 331 (406)
Q Consensus 252 D~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~ 331 (406)
|.+||++++.++++|||+|++|++|... ....|..++++||+||++|++++|++|.+. + ..|+
T Consensus 145 D~~~pe~~r~~~~~ga~ll~~ps~~~~~-~~~~~~~~~~~rA~en~~~vv~~n~~G~~~---------~-------~~~~ 207 (253)
T cd07583 145 DLRFPELFRKLALEGAEILFVPAEWPAA-RIEHWRTLLRARAIENQAFVVACNRVGTDG---------G-------NEFG 207 (253)
T ss_pred ccccHHHHHHHHHcCCcEEEECCCCCCC-chHHHHHHHHHHHHHhCCEEEEEcCcccCC---------C-------ceec
Confidence 9999999999999999999999998754 457899999999999999999999999852 1 4688
Q ss_pred eeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCc
Q 041243 332 GSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTAR 378 (406)
Q Consensus 332 G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r 378 (406)
|.|+|++|+|+++++++. ++++++++||++.++.+|..++++.+||
T Consensus 208 G~S~ii~p~G~il~~~~~-~~~~~~~~i~l~~~~~~r~~~~~~~~~~ 253 (253)
T cd07583 208 GHSMVIDPWGEVLAEAGE-EEEILTAEIDLEEVAEVRKKIPVFKDRR 253 (253)
T ss_pred ceeEEECCCchhheecCC-CceEEEEEecHHHHHHHHHhCCchhhcC
Confidence 999999999999988875 7899999999999999999999988876
No 16
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=2.1e-46 Score=357.65 Aligned_cols=254 Identities=26% Similarity=0.394 Sum_probs=223.8
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQEL 171 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~l 171 (406)
|||++|+++. .++.+.|++++.++++.|+++|+|||||||+|++||..... ...+++...+++++.|+++
T Consensus 1 kva~~Q~~~~-------~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~---~~~~~~~~~~~~~~~l~~~ 70 (254)
T cd07576 1 RLALYQGPAR-------DGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDA---VARLAEPADGPALQALRAI 70 (254)
T ss_pred CEEEEecCCC-------CCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcch---hhhhhcccCChHHHHHHHH
Confidence 7999999875 37899999999999999999999999999999999864211 1122344457799999999
Q ss_pred HHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEecc
Q 041243 172 ARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICY 251 (406)
Q Consensus 172 Akk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICy 251 (406)
|++++++|++|++++. ++++||++++|+++|+++++|+|.||++ +.|..+|.+|+. +++|+++++|||++|||
T Consensus 71 a~~~~~~ii~G~~~~~---~~~~yNs~~~i~~~G~i~~~y~K~~l~~---~~E~~~~~~G~~-~~v~~~~~~kig~~IC~ 143 (254)
T cd07576 71 ARRHGIAIVVGYPERA---GGAVYNAAVLIDEDGTVLANYRKTHLFG---DSERAAFTPGDR-FPVVELRGLRVGLLICY 143 (254)
T ss_pred HHHcCCEEEEeccccC---CCceEEEEEEECCCCCEeeEEEeeccCC---cchhhhccCCCC-ceEEEECCeEEEEEEee
Confidence 9999999999988876 5789999999999999999999999976 358889999997 89999999999999999
Q ss_pred CCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 041243 252 GRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFY 331 (406)
Q Consensus 252 D~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~ 331 (406)
|++||++++.++++|||+|++|+++....+ ..|..++++||+||++|++++|++|.+. + ..|.
T Consensus 144 D~~fpe~~~~~~~~gadii~~p~~~~~~~~-~~~~~~~~~rA~en~~~vv~an~~G~~~---------~-------~~~~ 206 (254)
T cd07576 144 DVEFPELVRALALAGADLVLVPTALMEPYG-FVARTLVPARAFENQIFVAYANRCGAED---------G-------LTYV 206 (254)
T ss_pred cCCCCHHHHHHHHCCCCEEEECCccCCCcc-hhhhhhhHHHHHhCCCEEEEEcccCCCC---------C-------ceee
Confidence 999999999999999999999998765443 5678889999999999999999999852 1 3689
Q ss_pred eeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchH
Q 041243 332 GSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYE 380 (406)
Q Consensus 332 G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~d 380 (406)
|.|+|++|+|+++++++.+ +++++++||++.++..|..+++..++|++
T Consensus 207 G~S~i~~p~G~il~~~~~~-e~~~~~~id~~~~~~~R~~~~~~~~~~~~ 254 (254)
T cd07576 207 GLSSIAGPDGTVLARAGRG-EALLVADLDPAALAAARRENPYLADRRPE 254 (254)
T ss_pred eeeEEECCCCCEeEecCCC-CeEEEEEcCHHHHHhhhhcCchhhhcCCC
Confidence 9999999999999988876 89999999999999999999999888864
No 17
>PLN02798 nitrilase
Probab=100.00 E-value=4.1e-46 Score=363.07 Aligned_cols=268 Identities=24% Similarity=0.361 Sum_probs=229.1
Q ss_pred CCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCC-CCCCCCcchhHHhhhcCCCCcHHH
Q 041243 87 EPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWT-MPFAFCTREKRWCEFAEPVDGEST 165 (406)
Q Consensus 87 ~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l-~g~~~~~~~~~~~~~ae~~~~~~~ 165 (406)
+++.||||++|.++. ++.+.|+++++++++.|+++|+|||||||++. +|+.. ..+..+++...+++.
T Consensus 7 ~~~~~ria~~Q~~~~--------~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~----~~~~~~~~~~~~~~~ 74 (286)
T PLN02798 7 AGSSVRVAVAQMTST--------NDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKD----GESLAIAEPLDGPIM 74 (286)
T ss_pred ccCccEEEEEEccCC--------CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCc----hhhhhhcccCCCHHH
Confidence 457899999998742 68999999999999999999999999999854 56531 123345555567899
Q ss_pred HHHHHHHHhcCcEEEeec-eeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCC-----CCCCcccceecCCCCCceEE
Q 041243 166 QFLQELARKYNMVIISPI-LERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRV-----GDFNESTYYMEGNTGHPVFE 239 (406)
Q Consensus 166 ~~l~~lAkk~~i~Iv~G~-~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~-----g~f~E~~~~~~G~~~~~vf~ 239 (406)
+.|+++|++++++|++|. .++.. .++++||++++|+++|+++++|+|.||++. +.+.|..+|.+|+. +.+|+
T Consensus 75 ~~l~~~A~~~~i~iv~G~~~~~~~-~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~-~~v~~ 152 (286)
T PLN02798 75 QRYRSLARESGLWLSLGGFQEKGP-DDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKT-IVAVD 152 (286)
T ss_pred HHHHHHHHHcCeEEEEeeeEcccC-CCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCe-eeEEe
Confidence 999999999999998874 44421 256899999999999999999999999531 22458888999985 89999
Q ss_pred cCCceEEEEeccCCcchHHHHHHH-HCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCC
Q 041243 240 TAFGKIAVNICYGRHHPLNWLAFG-LNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSG 318 (406)
Q Consensus 240 t~~gkigv~ICyD~~~Pe~~~~~~-~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~ 318 (406)
++++|||++||||.+||++++.++ ++|||+|++|+++....+..+|..++++||+||++|++++|++|...
T Consensus 153 ~~~~k~g~~IC~D~~fpe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~~G~~~-------- 224 (286)
T PLN02798 153 SPVGRLGLTVCYDLRFPELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGKHN-------- 224 (286)
T ss_pred cCCceEEEEEEEcccChHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecccCcCC--------
Confidence 999999999999999999999998 99999999999987665667899999999999999999999999752
Q ss_pred CCCCCCCCCcccceeeEEECCCCCeeccCCC-CCceEEEEEeehhHHHHHHhhcCCCccCchHHHH
Q 041243 319 DGKPQHKDFGHFYGSSHFSAPDGSCTPSLSR-FRDGLLISDMDLNLCRQLKDKWGFRMTARYELYA 383 (406)
Q Consensus 319 ~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~-~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~ 383 (406)
+| ..++|.|+|++|+|+++++++. .++++++++||++.++..|+.+++..++|+|++.
T Consensus 225 ~~-------~~~~G~S~ii~p~G~il~~~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~~ 283 (286)
T PLN02798 225 EK-------RESYGHALIIDPWGTVVARLPDRLSTGIAVADIDLSLLDSVRTKMPIAEHRRSLEFW 283 (286)
T ss_pred CC-------ceeeeeeEEECCCccchhhcCCCCCCCEEEEEecHHHHHHHHHhCcchhccchhhhh
Confidence 12 4688999999999999988864 5789999999999999999999999999999885
No 18
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.3e-45 Score=353.43 Aligned_cols=257 Identities=30% Similarity=0.498 Sum_probs=225.9
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQEL 171 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~l 171 (406)
|||++|++.. ++|.+.|++++.++++.|+++|+|||||||++++||.+......+.++++...++..+.|+++
T Consensus 1 ria~~q~~~~-------~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (258)
T cd07584 1 KVALIQMDSV-------LGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSEL 73 (258)
T ss_pred CEEEEEecCc-------cCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHH
Confidence 6999999754 478999999999999999999999999999999999653222223345555567789999999
Q ss_pred HHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEecc
Q 041243 172 ARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICY 251 (406)
Q Consensus 172 Akk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICy 251 (406)
|++++++|++|+.++... ++++||++++|+++|+++++|+|.||+. .|..+|.+|+. .++|+++++|+|++|||
T Consensus 74 a~~~~i~i~~G~~~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~-~~~~~~~~~~~g~~IC~ 147 (258)
T cd07584 74 AKELGVYIVCGFVEKGGV-PGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQ-YPVFDTPFGKIGVMICY 147 (258)
T ss_pred HHHcCeEEEEeehcccCC-CCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCC-CeeEEcCCceEEEEEEc
Confidence 999999999999876531 3689999999999999999999999975 57789999986 89999999999999999
Q ss_pred CCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 041243 252 GRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFY 331 (406)
Q Consensus 252 D~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~ 331 (406)
|.+||++.+.++++|||+|++|++|... ....|...+++||+||++|++++|++|.+. + ..+.
T Consensus 148 D~~fpe~~r~~~~~gadll~~ps~~~~~-~~~~~~~~~~~rA~En~~~vv~~n~~g~~~---------~-------~~~~ 210 (258)
T cd07584 148 DMGFPEVARILTLKGAEVIFCPSAWREQ-DADIWDINLPARALENTVFVAAVNRVGNEG---------D-------LVLF 210 (258)
T ss_pred CccChHHHHHHHHCCCcEEEECCccCCC-CchHHHHHHHHHHHhCCcEEEEECccccCC---------C-------ceec
Confidence 9999999999999999999999998754 457898899999999999999999999752 1 3688
Q ss_pred eeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCc
Q 041243 332 GSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTAR 378 (406)
Q Consensus 332 G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r 378 (406)
|.|+|++|+|+++++++.+++++++++||++.++..|.+.+++.++|
T Consensus 211 G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~p~~~~~~ 257 (258)
T cd07584 211 GKSKILNPRGQVLAEASEEAEEILYAEIDLDAIADYRMTLPYLKDRK 257 (258)
T ss_pred ceeEEECCCCceeeecCCCCCcEEEEEeCHHHHHHHHhhCchhhhcC
Confidence 99999999999999998888999999999999999999999988876
No 19
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=2.4e-45 Score=352.55 Aligned_cols=259 Identities=27% Similarity=0.408 Sum_probs=222.0
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQEL 171 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~l 171 (406)
|||++|+++. ++.+.|++++.++++.|+++|+|||||||++++||.... .. ....+....+++.+.|+++
T Consensus 1 kia~~Q~~~~--------~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~-~~-~~~~~~~~~~~~~~~l~~~ 70 (265)
T cd07572 1 RVALIQMTST--------ADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDA-FK-LALAEEEGDGPTLQALSEL 70 (265)
T ss_pred CEEEEEeeCC--------CCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchh-hh-hhhhccccCChHHHHHHHH
Confidence 6999999854 689999999999999999999999999999999985311 11 1112333446889999999
Q ss_pred HHhcCcEEEeec-eeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCC-----CCCCcccceecCCCCCceEEcCCceE
Q 041243 172 ARKYNMVIISPI-LERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRV-----GDFNESTYYMEGNTGHPVFETAFGKI 245 (406)
Q Consensus 172 Akk~~i~Iv~G~-~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~-----g~f~E~~~~~~G~~~~~vf~t~~gki 245 (406)
|++++++|++|. .++... ++++||++++|+++|+++++|+|+||+.. ..|.|..+|.+|+. ..+|+++++|+
T Consensus 71 a~~~~i~i~~G~~~~~~~~-~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~-~~~~~~~~~~i 148 (265)
T cd07572 71 AKEHGIWLVGGSIPERDDD-DGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDE-VVVVDTPFGKI 148 (265)
T ss_pred HHHCCeEEEEeeeccccCC-CCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCc-ceEEecCCceE
Confidence 999999999884 455421 37899999999999999999999999531 23678899999996 89999999999
Q ss_pred EEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCC
Q 041243 246 AVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHK 325 (406)
Q Consensus 246 gv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~ 325 (406)
|++||||.+||++++.++.+|||||++|+++....+..+|..++++||+||+++++++|++|.+. ++
T Consensus 149 g~~IC~D~~~pe~~r~~~~~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~--------~~----- 215 (265)
T cd07572 149 GLGICYDLRFPELARALARQGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQAGDHE--------AG----- 215 (265)
T ss_pred EEEEEeccCcHHHHHHHHHCCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcccccCC--------CC-----
Confidence 99999999999999999999999999999987666667899999999999999999999999852 11
Q ss_pred CCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCc
Q 041243 326 DFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTAR 378 (406)
Q Consensus 326 ~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r 378 (406)
..|+|.|.|++|+|+++.+++.. +++++++||++.+++.|.+++++.++|
T Consensus 216 --~~~~G~S~i~~p~G~il~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~~~ 265 (265)
T cd07572 216 --RETYGHSMIVDPWGEVLAEAGEG-EGVVVAEIDLDRLEEVRRQIPVLKHRR 265 (265)
T ss_pred --CeecceeEEECCCcHHHhhcCCC-CcEEEEEeCHHHHHHHHHhCcchhhcC
Confidence 46889999999999999988866 899999999999999999999887775
No 20
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.4e-45 Score=353.81 Aligned_cols=256 Identities=30% Similarity=0.520 Sum_probs=221.0
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCC-CcHHHHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-DGESTQFLQE 170 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~-~~~~~~~l~~ 170 (406)
|||++|++.. .+|.+.|++++.++++.|. +|||||||+|++||.+.... .+.++++.. .+++++.|++
T Consensus 1 kia~~Q~~~~-------~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~l~~ 69 (259)
T cd07577 1 KVGYVQFNPK-------FGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKE-EVASLAESIPDGPTTRFLQE 69 (259)
T ss_pred CEEEEEccCc-------cCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHH-HHHHhhcccCCChHHHHHHH
Confidence 6999999854 4789999999999998874 99999999999999764322 244455554 4789999999
Q ss_pred HHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEec
Q 041243 171 LARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNIC 250 (406)
Q Consensus 171 lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~IC 250 (406)
+|++++++|++|+.++. ++++||++++|+++| ++++|+|.||+. .|..+|.+|+..+++|+++++|||++||
T Consensus 70 ~a~~~~i~ii~G~~~~~---~~~~yNs~~vi~~~G-i~~~y~K~~l~~----~e~~~~~~G~~~~~~~~~~~~~ig~~IC 141 (259)
T cd07577 70 LARETGAYIVAGLPERD---GDKFYNSAVVVGPEG-YIGIYRKTHLFY----EEKLFFEPGDTGFRVFDIGDIRIGVMIC 141 (259)
T ss_pred HHHHhCcEEEecceecc---CCceEEEEEEECCCc-cEeeEeeccCCh----hhhccccCCCCCCceEEeCCcEEEEEEE
Confidence 99999999999998875 578999999999999 899999999975 5888999999558999999999999999
Q ss_pred cCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCccc
Q 041243 251 YGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHF 330 (406)
Q Consensus 251 yD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~ 330 (406)
||.+||++++.++.+|||+|++|++|.. +.|...+++||+||++|++++|++|.+... +++ ..|
T Consensus 142 ~D~~fpe~~r~~~~~Gadli~~ps~~~~----~~~~~~~~~rA~en~~~vv~~n~~G~~~~~-----~~~-------~~~ 205 (259)
T cd07577 142 FDWYFPEAARTLALKGADIIAHPANLVL----PYCPKAMPIRALENRVFTITANRIGTEERG-----GET-------LRF 205 (259)
T ss_pred cCcccchHHHHHHHcCCCEEEECCccCC----chhhhhhhHhhhhcCceEEEEecCcccCCC-----CCC-------ceE
Confidence 9999999999999999999999999752 368888899999999999999999986310 011 468
Q ss_pred ceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHH--hhcCCCccCchHHH
Q 041243 331 YGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLK--DKWGFRMTARYELY 382 (406)
Q Consensus 331 ~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r--~~~~~~~~~r~dlY 382 (406)
.|.|+|++|+|+++.+++..+++++++++|++.++..| ..++++.++|+++|
T Consensus 206 ~G~S~i~~p~G~i~~~~~~~~e~~~~~~id~~~~~~~~~~~~~~~~~~~r~~~~ 259 (259)
T cd07577 206 IGKSQITSPKGEVLARAPEDGEEVLVAEIDPRLARDKRINEENDIFKDRRPEFY 259 (259)
T ss_pred eeeeEEECCCCCEEeecCCCCCcEEEEEEchHHhhcccccccCchhhhcCcccC
Confidence 89999999999999988878899999999999998755 67888889999886
No 21
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.8e-45 Score=348.71 Aligned_cols=253 Identities=26% Similarity=0.395 Sum_probs=223.3
Q ss_pred EEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHH
Q 041243 93 VGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELA 172 (406)
Q Consensus 93 ValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lA 172 (406)
||++|++.. ++.+.|++++.++++.|+++|+|||||||++++||.... ..|.+.+....+++++.|+++|
T Consensus 1 ia~~Q~~~~--------~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~--~~~~~~~~~~~~~~~~~l~~~a 70 (255)
T cd07581 1 VALAQFASS--------GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGL--DDYARVAEPLDGPFVSALARLA 70 (255)
T ss_pred CEEEEeeCC--------CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcch--hhHHhhhccCCCHHHHHHHHHH
Confidence 689999753 789999999999999999999999999999999985421 1245566666678999999999
Q ss_pred HhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCC-CceEEcCCceEEEEecc
Q 041243 173 RKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTG-HPVFETAFGKIAVNICY 251 (406)
Q Consensus 173 kk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~-~~vf~t~~gkigv~ICy 251 (406)
++++++|++|+++++. ++++||++++|+++|+++++|+|.||+....|.|..+|.+|+.. ..+|++.++|||++|||
T Consensus 71 ~~~~i~iv~G~~~~~~--~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~ 148 (255)
T cd07581 71 RELGITVVAGMFEPAG--DGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLATCY 148 (255)
T ss_pred HHcCeEEEEEeeeeCC--CCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEEEEe
Confidence 9999999999998763 34899999999999999999999999876667899999999863 45788888999999999
Q ss_pred CCcchHHHHHHHHCCCcEEEEcCCCCCCC-CcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCccc
Q 041243 252 GRHHPLNWLAFGLNGAEIVFNPSATVGEL-SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHF 330 (406)
Q Consensus 252 D~~~Pe~~~~~~~~Gadii~~Psa~~~~~-~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~ 330 (406)
|.+||++++.++++||++|++|++|.... +..+|..++++||+||++|++++|++|. .+
T Consensus 149 D~~~pe~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~--------------------~~ 208 (255)
T cd07581 149 DLRFPELARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP--------------------RG 208 (255)
T ss_pred cccCHHHHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC--------------------Cc
Confidence 99999999999999999999999987543 4578999999999999999999999986 36
Q ss_pred ceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCc
Q 041243 331 YGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTAR 378 (406)
Q Consensus 331 ~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r 378 (406)
.|.|+|++|+|.++++.+. .+++++++||++.++++|.++++..+||
T Consensus 209 ~G~S~i~~p~G~i~~~~~~-~~~~l~~~id~~~~~~~r~~~~~~~~~~ 255 (255)
T cd07581 209 IGRSMVVDPLGVVLADLGE-REGLLVADIDPERVEEAREALPVLENRR 255 (255)
T ss_pred ccceEEECCCcceeeecCC-CCcEEEEEeCHHHHHHHHHhCcchhcCC
Confidence 7899999999999988875 4899999999999999999999998886
No 22
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3e-45 Score=352.99 Aligned_cols=260 Identities=25% Similarity=0.385 Sum_probs=224.0
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQEL 171 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~l 171 (406)
|||++|++.. .++.+.|++++.++++.|+++|+|||||||++++||.... ...+.+....+++++.|++.
T Consensus 1 kia~~q~~~~-------~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~---~~~~~~~~~~~~~~~~l~~~ 70 (269)
T cd07586 1 RVAIAQIDPV-------LGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGD---LVYEVAMHADDPRLQALAEA 70 (269)
T ss_pred CEEEEecCCc-------cCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchh---hhhhhhcccchHHHHHHHHH
Confidence 6999999754 4789999999999999999999999999999999996321 11223333335666666666
Q ss_pred HHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEecc
Q 041243 172 ARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICY 251 (406)
Q Consensus 172 Akk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICy 251 (406)
++ ++.|++|++++.. ++++||++++| ++|+++++|+|+|+|..+.|.|..+|.+|+. +.+|+++++|||++|||
T Consensus 71 a~--~~~ii~G~~~~~~--~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~-~~vf~~~~~~ig~~IC~ 144 (269)
T cd07586 71 SG--GICVVFGFVEEGR--DGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFAPGSH-LRAFDTRFGRAGVLICE 144 (269)
T ss_pred cC--CCEEEEeCeEEcC--CCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeecCCCc-ceEEEeCCeEEEEEEEe
Confidence 53 7999999988763 47899999999 8999999999999988777889999999996 89999999999999999
Q ss_pred CCcchHHHHHHHHCCCcEEEEcCCCCCCC------CcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCC
Q 041243 252 GRHHPLNWLAFGLNGAEIVFNPSATVGEL------SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHK 325 (406)
Q Consensus 252 D~~~Pe~~~~~~~~Gadii~~Psa~~~~~------~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~ 325 (406)
|.+||+.++.++.+|||+|++|+++.... ...+|..++++||+||++++++||++|.+. +
T Consensus 145 D~~fp~~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~---------~----- 210 (269)
T cd07586 145 DAWHPSLPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVED---------G----- 210 (269)
T ss_pred ccCCcHHHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCcC---------C-----
Confidence 99999999999999999999999964321 124789999999999999999999999852 1
Q ss_pred CCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHH
Q 041243 326 DFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYA 383 (406)
Q Consensus 326 ~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~ 383 (406)
..|+|+|.|++|+|+++++++..++++++++||++.++..|..++++.++|+++|.
T Consensus 211 --~~~~G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 266 (269)
T cd07586 211 --VYFWGGSRVVDPDGEVVAEAPLFEEDLLVAELDRSAIRRARFFSPTFRDEDIRLVL 266 (269)
T ss_pred --ceEeCCcEEECCCCCEEEecCCccccEEEEEecHHHHHHHHhhCccccccChhhhh
Confidence 46889999999999999988877889999999999999999999999999999986
No 23
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=8.3e-45 Score=348.40 Aligned_cols=256 Identities=30% Similarity=0.465 Sum_probs=218.2
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQE 170 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~ 170 (406)
+|||++|++.. .+|.+.|++++.++++.|+++|+|||||||++++||.+... .....+.+..++++.+.|++
T Consensus 1 ~ria~~Q~~~~-------~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~-~~~~~~~~~~~~~~~~~l~~ 72 (258)
T cd07578 1 YKAAAIQFEPE-------MGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDR-AEIAPFVEPIPGPTTARFAE 72 (258)
T ss_pred CeEEEEEecCc-------cccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCH-HHhhhhcccCCCHHHHHHHH
Confidence 58999999854 47899999999999999999999999999999999964322 12334555556788999999
Q ss_pred HHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEec
Q 041243 171 LARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNIC 250 (406)
Q Consensus 171 lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~IC 250 (406)
+|+++++.|++|++++... ++++||++++|+++| ++++|+|.|++. .|..+|.+|+.++.+|+++++|||++||
T Consensus 73 ~a~~~~i~ii~G~~~~~~~-~~~~yNs~~vi~~~g-~~~~y~K~h~~~----~e~~~~~~g~~~~~v~~~~~~rig~~IC 146 (258)
T cd07578 73 LAREHDCYIVVGLPEVDSR-SGIYYNSAVLIGPSG-VIGRHRKTHPYI----SEPKWAADGDLGHQVFDTEIGRIALLIC 146 (258)
T ss_pred HHHHcCcEEEEecceecCC-CCCeeEEEEEECCCC-cEEeEeeecCCc----ccccccCCCCCCceEEECCCccEEEEEe
Confidence 9999999999999876521 467999999999999 789999999863 5888999998667899999999999999
Q ss_pred cCCcchHHHHHHHHCCCcEEEEcCCCCCCCCc-CcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcc
Q 041243 251 YGRHHPLNWLAFGLNGAEIVFNPSATVGELSE-PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGH 329 (406)
Q Consensus 251 yD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~-~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~ 329 (406)
||++||++++.++++||++|++|++|...... ..| ++||+||++|++++|++|.+. + ..
T Consensus 147 ~D~~fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~----~~rA~en~~~vv~an~~G~~~---------~-------~~ 206 (258)
T cd07578 147 MDIHFFETARLLALGGADVICHISNWLAERTPAPYW----INRAFENGCYLIESNRWGLER---------G-------VQ 206 (258)
T ss_pred eCCCchHHHHHHHHcCCCEEEEcCCCCCCCCcchHH----HHhhhcCCeEEEEecceeccC---------C-------cc
Confidence 99999999999999999999999998754322 234 479999999999999999852 2 46
Q ss_pred cceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhh-cCCCccCchHH
Q 041243 330 FYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDK-WGFRMTARYEL 381 (406)
Q Consensus 330 ~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~-~~~~~~~r~dl 381 (406)
|.|+|.|++|+|+++++++ .++++++++||++.++..|.. +++..+||+++
T Consensus 207 ~~G~S~ii~p~G~il~~~~-~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~ 258 (258)
T cd07578 207 FSGGSCIIEPDGTIQASID-SGDGVALGEIDLDRARHRQFPGELVFTARRPEL 258 (258)
T ss_pred eeeEEEEECCCCcEeeccC-CCCceEEEEecchHhhhhhcccchhhhhhccCC
Confidence 8899999999999998876 567999999999999998874 78888888864
No 24
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.5e-44 Score=351.82 Aligned_cols=269 Identities=23% Similarity=0.241 Sum_probs=221.0
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhh-----CCCeEEEecCCCCCCCCCCcchhH--HhhhcCCCCcHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGV-----SGVNILCLQEAWTMPFAFCTREKR--WCEFAEPVDGES 164 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~-----~gvdLVvfPE~~l~g~~~~~~~~~--~~~~ae~~~~~~ 164 (406)
+++++|...... +..+|.+.|++++.++++.|++ +|+|||||||+|++||.+...... +.+.++..++++
T Consensus 2 ~~~~~~~~~~~~---~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~ 78 (294)
T cd07582 2 TALALQPTCEAA---EDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPE 78 (294)
T ss_pred eeEEEecccccc---cChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCCCHH
Confidence 577889887653 3458999999999999999987 479999999999999976432222 245566667899
Q ss_pred HHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCC-------CCc-ccceecC-CCCC
Q 041243 165 TQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGD-------FNE-STYYMEG-NTGH 235 (406)
Q Consensus 165 ~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~-------f~E-~~~~~~G-~~~~ 235 (406)
++.|+++|++++++|++|+.+++...++++||++++|+++|+++++|+|+|++.... +.| ..++.+| +..+
T Consensus 79 ~~~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~ 158 (294)
T cd07582 79 TEALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALF 158 (294)
T ss_pred HHHHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCcccccc
Confidence 999999999999999999988763223689999999999999999999999975211 111 1234555 3347
Q ss_pred ceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCC
Q 041243 236 PVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPF 315 (406)
Q Consensus 236 ~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~ 315 (406)
++|+++++|||++||||.+||++++.++++|||||++|++|+...+...|..++++||+||++|++++|++|.+..
T Consensus 159 ~v~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~arA~en~~~vv~aN~~G~~~~---- 234 (294)
T cd07582 159 PVADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANSGGIYGS---- 234 (294)
T ss_pred eeecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCCCcchhhHHHHHHHHHHhcCCEEEEecccccCcc----
Confidence 8999999999999999999999999999999999999999876555568988999999999999999999997521
Q ss_pred CCCCCCCCCCCCcccceeeEEECCCCCeeccCCCC-CceEEEEEeehhHHHHHHhhcCCCc
Q 041243 316 TSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRF-RDGLLISDMDLNLCRQLKDKWGFRM 375 (406)
Q Consensus 316 ~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~-~e~llvaeidl~~~~~~r~~~~~~~ 375 (406)
+.+ ...|.|.|.|++|+|+++++++.. ++++++++||++.++..|..+++-.
T Consensus 235 ----~~~----~~~~~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~~~ 287 (294)
T cd07582 235 ----PYP----ADSFGGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGMHN 287 (294)
T ss_pred ----ccc----CceecceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCccc
Confidence 000 135789999999999999998877 7899999999999999999988743
No 25
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.1e-44 Score=347.53 Aligned_cols=256 Identities=31% Similarity=0.482 Sum_probs=222.7
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQEL 171 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~l 171 (406)
|||++|+++. .++.+.|+++++++++.|+++|+|||||||++++||..... +...+....++.++.++++
T Consensus 1 ~ia~~Q~~~~-------~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~---~~~~~~~~~~~~~~~l~~~ 70 (261)
T cd07585 1 RIALVQFEAR-------VGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRA---LSREAEVPDGPSTQALSDL 70 (261)
T ss_pred CEEEEEeecC-------CCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcc---cchhcccCCChHHHHHHHH
Confidence 6999999875 37899999999999999999999999999999999853211 1111233346789999999
Q ss_pred HHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEecc
Q 041243 172 ARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICY 251 (406)
Q Consensus 172 Akk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICy 251 (406)
|++++++|++|+.+++ ++++||++++|+++|. +++|+|.||++ .|..+|.+|+. .++|+++++|||++|||
T Consensus 71 a~~~~~~i~~G~~~~~---~~~~yNs~~vi~~~g~-i~~y~K~~l~~----~E~~~~~~G~~-~~v~~~~~~rig~~IC~ 141 (261)
T cd07585 71 ARRYGLTILAGLIEKA---GDRPYNTYLVCLPDGL-VHRYRKLHLFR----REHPYIAAGDE-YPVFATPGVRFGILICY 141 (261)
T ss_pred HHHcCcEEEEeccccC---CCceeEEEEEECCCCc-EeEEeeecCCc----cccceEcCCCC-CceEEcCCceEEEEEEc
Confidence 9999999999998765 5689999999999997 68999999987 58889999986 89999999999999999
Q ss_pred CCcchHHHHHHHHCCCcEEEEcCCCCCCC---CcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCc
Q 041243 252 GRHHPLNWLAFGLNGAEIVFNPSATVGEL---SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFG 328 (406)
Q Consensus 252 D~~~Pe~~~~~~~~Gadii~~Psa~~~~~---~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~ 328 (406)
|.+||++++.++++|||+|++|+++.... ....|...+++||+||++|++++|++|... + .
T Consensus 142 D~~~pe~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~~---------~-------~ 205 (261)
T cd07585 142 DNHFPENVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRDG---------G-------E 205 (261)
T ss_pred CCcCcHHHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccCC---------C-------c
Confidence 99999999999999999999999876543 235788889999999999999999999752 1 3
Q ss_pred ccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhh--cCCCccCchHHH
Q 041243 329 HFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDK--WGFRMTARYELY 382 (406)
Q Consensus 329 ~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~--~~~~~~~r~dlY 382 (406)
.|.|.|+|++|+|+++++++.+++++++++||+..++.+|.. .+++.++|+++|
T Consensus 206 ~~~G~S~i~~p~G~v~~~~~~~~e~~l~~~id~~~~~~~r~~~~~~~~~~~~~~~~ 261 (261)
T cd07585 206 VFPGGAMILDPYGRVLAETTSGGDGMVVADLDLDLINTVRGRRWISFLRARRPELY 261 (261)
T ss_pred eecceEEEECCCCCEEeccCCCCCcEEEEEecHHHHHHhhccccCccccccCccCC
Confidence 678999999999999999988899999999999999999986 467888998887
No 26
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=5.4e-45 Score=356.65 Aligned_cols=251 Identities=18% Similarity=0.186 Sum_probs=206.8
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhH------------Hhhhc--
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKR------------WCEFA-- 157 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~------------~~~~a-- 157 (406)
|+|+||......+..-...+.++|++++.++++.|+++|+|||||||+|++||.+...... |...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (299)
T cd07567 2 IAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDP 81 (299)
T ss_pred EEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhcccccccccccccccc
Confidence 7899999765433211234569999999999999999999999999999999975321100 11111
Q ss_pred -CCCCcHHHHHHHHHHHhcCcEEEeeceeecc---------CCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccc
Q 041243 158 -EPVDGESTQFLQELARKYNMVIISPILERDV---------NHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTY 227 (406)
Q Consensus 158 -e~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~---------~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~ 227 (406)
....+++++.|+++|++++++|++|+.++.. ..++.+|||+++|+++|+++++|||+||+ .|..+
T Consensus 82 ~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~~ 156 (299)
T cd07567 82 DRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPGF 156 (299)
T ss_pred cccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----ccccc
Confidence 1123578999999999999999999988742 11236999999999999999999999996 48889
Q ss_pred eecCCCCCceEEcCCc-eEEEEeccCCcchHHHHHHHHC-CCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECC
Q 041243 228 YMEGNTGHPVFETAFG-KIAVNICYGRHHPLNWLAFGLN-GAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINR 305 (406)
Q Consensus 228 ~~~G~~~~~vf~t~~g-kigv~ICyD~~~Pe~~~~~~~~-Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~ 305 (406)
|.+|+..+.+|+|++| |||++||||++||+++|.++++ |||+|++|++|....+..+|..+.++||+||++||++||+
T Consensus 157 ~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~~~vi~~N~ 236 (299)
T cd07567 157 DVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANGVNLLAANY 236 (299)
T ss_pred cCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCCCCchhHHHHHHHHHHHcCceEEEecC
Confidence 9999755799999987 9999999999999999999999 9999999999975544568999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccceeeEEECCC-CCeeccCCC-CCceEEEEEeehhHHHH
Q 041243 306 VGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPD-GSCTPSLSR-FRDGLLISDMDLNLCRQ 366 (406)
Q Consensus 306 ~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~-G~i~~~~~~-~~e~llvaeidl~~~~~ 366 (406)
+|.. .++|+|.|++|+ |+++++++. .++++++++||++..|+
T Consensus 237 ~g~~-------------------~~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~~ 280 (299)
T cd07567 237 NNPS-------------------AGMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSRR 280 (299)
T ss_pred CCCc-------------------CccccceEEcCCCCcEEEEecCCCCceEEEEEccCCcccc
Confidence 9863 356999999999 999998754 46789999999988653
No 27
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=3.8e-44 Score=346.77 Aligned_cols=266 Identities=26% Similarity=0.372 Sum_probs=227.3
Q ss_pred CccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHH
Q 041243 89 RVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFL 168 (406)
Q Consensus 89 ~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l 168 (406)
+.||||++|++.. ..+..+|++++.++++.|+++|+|||||||+|++||.... ...+........++.++++
T Consensus 1 ~~~rvA~~Q~~~~-------~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~-~~~~~~~~~~~~~~~~~~l 72 (274)
T COG0388 1 SMMRVAAAQMAPK-------AGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED-DLFLEEAAAEAGEETLEFL 72 (274)
T ss_pred CceEEEEEEecCC-------CCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc-HHHHHhhhhccCChHHHHH
Confidence 3689999999864 3789999999999999999999999999999999996432 1113333334447899999
Q ss_pred HHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEE
Q 041243 169 QELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVN 248 (406)
Q Consensus 169 ~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ 248 (406)
+++|++++++|++|..... . ..||++++++++|+++++|||.||++. .+.|+.+|.+|+....+|+++++|+|+.
T Consensus 73 ~~~a~~~~~~ivg~~~~~~---~-~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~ 147 (274)
T COG0388 73 AALAEEGGVIIVGGPLPER---E-KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLL 147 (274)
T ss_pred HHHHHhCCeEEEEeeeecc---c-cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEE
Confidence 9999977777777655443 2 789999999999999999999999986 5679999999997446999999999999
Q ss_pred eccCCcchHHHHHH-HHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q 041243 249 ICYGRHHPLNWLAF-GLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDF 327 (406)
Q Consensus 249 ICyD~~~Pe~~~~~-~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~ 327 (406)
||||++||++++.+ +.+||++|++|+++....+..+|..+.++||+||++|++.+|++|.+. + .
T Consensus 148 IC~D~~fPe~~~~~~a~~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en~~~vv~~n~~g~~~---------~------~ 212 (274)
T COG0388 148 ICYDLRFPELARRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANRAGFDG---------A------G 212 (274)
T ss_pred EEeeccCHHHHHHHHHhcCCeEEEEcCCCCCcccHHHHHHHHHHHhhhcCceEEEecccCCCC---------C------c
Confidence 99999999988777 888999999999998887778999999999999999999999999863 1 1
Q ss_pred cccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHH
Q 041243 328 GHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELY 382 (406)
Q Consensus 328 ~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY 382 (406)
..|+|+|.|++|+|++++++...+++++++++|++.++..|..++....+|...+
T Consensus 213 ~~~~G~S~i~~p~G~v~~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~~~~~~ 267 (274)
T COG0388 213 LEFCGHSAIIDPDGEVLAEAGEEEEGVLLADIDLAELAEVRRKIPVLKDRRRFDL 267 (274)
T ss_pred cEEecceEEECCCccEEeecCCCCCcEEEEEECHHHHHHHHhhCcchhhcccchh
Confidence 4799999999999999999887789999999999999999999998776544433
No 28
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=1e-43 Score=353.97 Aligned_cols=273 Identities=20% Similarity=0.232 Sum_probs=227.0
Q ss_pred cCCCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHh--hCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCc
Q 041243 85 LREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAG--VSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDG 162 (406)
Q Consensus 85 ~~~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~--~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~ 162 (406)
.+.+..|+||++|.+++... ...+..+|++++.++++.|+ ..|+|||||||++++||.+.. ..+.+.+..+++
T Consensus 7 ~~~~~~l~va~vQ~~~p~~~---~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~--~~~~~~a~~i~g 81 (345)
T PRK13286 7 SSSNDTVGVAVVNYKMPRLH---TKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDR--QEMYETASTIPG 81 (345)
T ss_pred CCCCCceEEEEEEcCCCccC---CHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcCh--HHHHHhcccCCC
Confidence 34567899999999865322 23799999999999999887 468999999999999986543 234556777778
Q ss_pred HHHHHHHHHHHhcCcEEEeece-eeccC-CCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEc
Q 041243 163 ESTQFLQELARKYNMVIISPIL-ERDVN-HGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFET 240 (406)
Q Consensus 163 ~~~~~l~~lAkk~~i~Iv~G~~-e~~~~-~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t 240 (406)
+.++.|+++|+++++++++++. ++... .++.+|||+++|+++|+++++|||.|++. +..+|.+|+. ..+|++
T Consensus 82 ~~~~~l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~-----~~e~~~pG~~-~~v~~~ 155 (345)
T PRK13286 82 EETAIFAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC-----PIEGWYPGDC-TYVSEG 155 (345)
T ss_pred HHHHHHHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc-----hhhceecCCC-CEEEeC
Confidence 8999999999999999998876 44221 24569999999999999999999999753 4456889996 689999
Q ss_pred CCc-eEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCC
Q 041243 241 AFG-KIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGD 319 (406)
Q Consensus 241 ~~g-kigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~ 319 (406)
+.| |||++||||.+|||++|.++++|||+|++|++|... ...+|..++++||+||++||+.||++|.+.
T Consensus 156 ~~G~kiG~lIC~D~~fPE~~R~la~~GAelii~psa~~~~-~~~~~~~~~rarA~eN~~yVv~aN~~G~~~--------- 225 (345)
T PRK13286 156 PKGLKISLIICDDGNYPEIWRDCAMKGAELIVRCQGYMYP-AKEQQVLVAKAMAWANNCYVAVANAAGFDG--------- 225 (345)
T ss_pred CCCcEEEEEEEecccChHHHHHHHHcCCeEEEEccccCCC-chHHHHHHHHHHHHHCCCEEEEEecccccC---------
Confidence 765 999999999999999999999999999999997654 446899999999999999999999999752
Q ss_pred CCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHhcc
Q 041243 320 GKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANY 389 (406)
Q Consensus 320 G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~~~ 389 (406)
+ ..|+|.|+|++|+|+++++++..++++++++||++.++.+|..|+...+ +|+.....|
T Consensus 226 ~-------~~~~G~S~Ivdp~G~vla~~~~~~e~ii~adld~~~i~~~R~~~~~~n~----~~~~~~~~y 284 (345)
T PRK13286 226 V-------YSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSVSQIRDARRNDQSQNH----LFKLLHRGY 284 (345)
T ss_pred C-------ceeeeeEEEECCCCcEEEecCCCCCeEEEEEEeHHHHHHHHHhCCcccc----hhhhccceE
Confidence 1 4688999999999999999887788999999999999999999976433 555444444
No 29
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.8e-44 Score=348.36 Aligned_cols=266 Identities=25% Similarity=0.342 Sum_probs=217.8
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCC-CCcch----hHHhhhcCCCCcHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFA-FCTRE----KRWCEFAEPVDGEST 165 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~-~~~~~----~~~~~~ae~~~~~~~ 165 (406)
||||++|+++.. .++.++|+++++++++.|+++|+|||||||++++||. +.... ..+........++++
T Consensus 1 m~va~~Q~~~~~------~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (280)
T cd07574 1 VRVAAAQYPLRR------YASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALTPDYV 74 (280)
T ss_pred CeeEEEEccCcC------CCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHHHHHH
Confidence 799999998642 1688999999999999999999999999999998853 11111 111111222236789
Q ss_pred HHHHHHHHhcCcEEEeece-eeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCce
Q 041243 166 QFLQELARKYNMVIISPIL-ERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGK 244 (406)
Q Consensus 166 ~~l~~lAkk~~i~Iv~G~~-e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gk 244 (406)
+.|+++|++++++|++|+. ++. ++++||++++|+++|.+ ++|+|.||++++ .|..++.+|+. ..+|+++++|
T Consensus 75 ~~l~~~a~~~~i~iv~G~~~~~~---~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~-~~v~~~~~~~ 147 (280)
T cd07574 75 ALFSELARKYGINIIAGSMPVRE---DGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDK-LKVFDTDLGK 147 (280)
T ss_pred HHHHHHHHHhCCEEEecceEEcC---CCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCC-ceEEecCCcc
Confidence 9999999999999999964 443 67899999999999986 999999998742 23446788986 8999999999
Q ss_pred EEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCC
Q 041243 245 IAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQH 324 (406)
Q Consensus 245 igv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~ 324 (406)
||++||||++||++++.++.+|||+|++|+++....+..+|...+++||+||++|++++|++|.....+ +|
T Consensus 148 ig~~IC~D~~fpe~~r~l~~~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en~~~vv~an~~G~~~~~~-----~~---- 218 (280)
T cd07574 148 IGILICYDSEFPELARALAEAGADLLLVPSCTDTRAGYWRVRIGAQARALENQCYVVQSGTVGNAPWSP-----AV---- 218 (280)
T ss_pred EEEEEecccccHHHHHHHHHcCCCEEEECCcCCccccHHHHHHHHHHHHHhhCceEEEeCCCCCCCCcc-----cc----
Confidence 999999999999999999999999999999986554555677778999999999999999999853110 11
Q ss_pred CCCcccceeeEEECCC------CCeeccCCCCCceEEEEEeehhHHHHHHhhcCC--CccCchHH
Q 041243 325 KDFGHFYGSSHFSAPD------GSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGF--RMTARYEL 381 (406)
Q Consensus 325 ~~~~~~~G~S~Ii~P~------G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~--~~~~r~dl 381 (406)
..++|+|.|++|+ |.++++.+..++++++++||++.++..|..+++ +.++|+||
T Consensus 219 ---~~~~G~S~i~~P~~~~~~~g~~l~~~~~~~e~~~~a~iD~~~~~~~R~~~~~~~~~~~~~~~ 280 (280)
T cd07574 219 ---DVNYGQAAVYTPCDFGFPEDGILAEGEPNTEGWLIADLDLEALRRLREEGSVRNLRDWREDL 280 (280)
T ss_pred ---ccccccceeecCCCCCCCCCCeEeecCCCCCceEEEecCHHHHHHHhhcCCccCcccCcccC
Confidence 3688999999996 888888877789999999999999999999775 57788875
No 30
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=8.9e-44 Score=340.27 Aligned_cols=250 Identities=22% Similarity=0.376 Sum_probs=217.6
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQE 170 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~ 170 (406)
||||++|+++. ++|.+.|++++.++++.|++ |+|||||||++++||.+.. .++++...+..++.|++
T Consensus 1 mkia~~Q~~~~-------~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~-----~~~~~~~~~~~~~~l~~ 67 (252)
T cd07575 1 LKIALIQTDLV-------WEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNA-----EALAEPMNGPTLQWMKA 67 (252)
T ss_pred CEEEEEEeecC-------cCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccH-----HHhhcccCChHHHHHHH
Confidence 79999999875 47899999999999999998 9999999999999996421 12445555788999999
Q ss_pred HHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEec
Q 041243 171 LARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNIC 250 (406)
Q Consensus 171 lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~IC 250 (406)
+|+++++.|++|+.+++ ++++||++++|+++|.+ ..|+|.|+++++ .|..+|.+|+. ..+|+++++|||++||
T Consensus 68 la~~~~i~i~~~~~~~~---~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~-~~~~~~~~~~ig~~IC 140 (252)
T cd07575 68 QAKKKGAAITGSLIIKE---GGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNE-RVIVEYKGWKILLQVC 140 (252)
T ss_pred HHHHCCeEEEEEEEEcc---CCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCC-ceEEEECCEEEEEEEE
Confidence 99999999998887765 56899999999999985 599999998643 58889999985 8999999999999999
Q ss_pred cCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCccc
Q 041243 251 YGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHF 330 (406)
Q Consensus 251 yD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~ 330 (406)
||.+||++++.++. |++|++|++|... ....|....++||+||++|++.||++|.+. .| ..|
T Consensus 141 ~D~~~pe~~r~~~~--a~lil~~s~~~~~-~~~~~~~~~~arA~en~~~vv~~n~~G~~~--------~~-------~~~ 202 (252)
T cd07575 141 YDLRFPVWSRNTND--YDLLLYVANWPAP-RRAAWDTLLKARAIENQAYVIGVNRVGTDG--------NG-------LEY 202 (252)
T ss_pred eccCChHHHHhhcC--CCEEEEeCCCCCC-chHHHHHHhHHHHhhccceEEEecccccCC--------CC-------ceE
Confidence 99999999988653 9999999998654 346899899999999999999999999862 11 358
Q ss_pred ceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCch
Q 041243 331 YGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARY 379 (406)
Q Consensus 331 ~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~ 379 (406)
.|.|+|++|+|+++++.+.. ++++++++|++.++.+|..++++.++|.
T Consensus 203 ~G~S~i~~p~G~~l~~~~~~-e~~i~~~id~~~~~~~r~~~~~~~~~~~ 250 (252)
T cd07575 203 SGDSAVIDPLGEPLAEAEED-EGVLTATLDKEALQEFREKFPFLKDADS 250 (252)
T ss_pred cceeEEECCCCceeeEcCCC-ceEEEEEECHHHHHHHHhhCCcccccCc
Confidence 89999999999999988766 8999999999999999999999887763
No 31
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=2.7e-43 Score=349.99 Aligned_cols=260 Identities=22% Similarity=0.290 Sum_probs=220.6
Q ss_pred cCCCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhh--CCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCc
Q 041243 85 LREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGV--SGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDG 162 (406)
Q Consensus 85 ~~~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~--~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~ 162 (406)
...+.+||||++|+++.... ..++.+.|++++.++++.|++ .|+|||||||++++||.... ....+++...++
T Consensus 8 ~~~~~~l~VAlvQ~~~~~~~---~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~--~~~~~~a~~~~g 82 (333)
T PRK13287 8 NKPIEGVLVALIQYPVPVVE---SRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKK--WTTEEFLCTVDG 82 (333)
T ss_pred cCCCCceEEEEEEcccccCC---chhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccc--cchhhhcccCCC
Confidence 34567899999999975321 247999999999999999986 48999999999999996421 012245555667
Q ss_pred HHHHHHHHHHHhcCcEEEeeceeeccCCCC-eeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcC
Q 041243 163 ESTQFLQELARKYNMVIISPILERDVNHGD-TIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETA 241 (406)
Q Consensus 163 ~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~-~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~ 241 (406)
+.++.|+++|+++++++++|+.++.. ++ ++|||+++|+++|+++++|||+|++. ....|.+|+...++|++.
T Consensus 83 ~~~~~l~~~a~~~~i~~~~g~~e~~~--~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~~v~~~~ 155 (333)
T PRK13287 83 PEVDAFAQACKENKVWGVFSIMERNP--DGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGIPVCDGP 155 (333)
T ss_pred HHHHHHHHHHHHcCeEEEEeeEEEcC--CCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCCceEECC
Confidence 89999999999999999999887653 33 49999999999999999999999742 234678998558999997
Q ss_pred Cc-eEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCC
Q 041243 242 FG-KIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDG 320 (406)
Q Consensus 242 ~g-kigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G 320 (406)
.| |||++||||.+||+++|.++.+|||||++|+++.... ...|....++||++|++|++++|++|.+ |
T Consensus 156 ~g~kiG~~ICyD~~fPe~~R~~a~~GAeill~~s~~~~~~-~~~w~~~~~arA~en~~~vv~an~~G~~----------~ 224 (333)
T PRK13287 156 GGSKLAVCICHDGMFPEMAREAAYKGANVMIRISGYSTQV-REQWILTNRSNAWQNLMYTASVNLAGYD----------G 224 (333)
T ss_pred CCceEEEEEEecccchHHHHHHHHCCCeEEEECCccCCcc-hhHHHHHHHHHHHhCCcEEEEEeccccC----------C
Confidence 55 9999999999999999999999999999999987653 4689889999999999999999999985 2
Q ss_pred CCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCC
Q 041243 321 KPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGF 373 (406)
Q Consensus 321 ~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~ 373 (406)
. ..++|.|.|++|+|+++++++..++++++++||++.++.+|..|++
T Consensus 225 ~------~~~~G~S~Iidp~G~vl~~~~~~~~~ii~aeid~~~~~~~R~~~~~ 271 (333)
T PRK13287 225 V------FYYFGEGQVCNFDGTTLVQGHRNPWEIVTAEVRPDLADEARLGWGL 271 (333)
T ss_pred C------eeeeeeeEEECCCCcEEEeCCCCCCeEEEEEEeHHHHHHHHHhcCc
Confidence 1 4688999999999999999988888999999999999999999988
No 32
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-45 Score=332.82 Aligned_cols=271 Identities=28% Similarity=0.384 Sum_probs=238.8
Q ss_pred CCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCc-chhHHhhhcCCCCcHHHH
Q 041243 88 PRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCT-REKRWCEFAEPVDGESTQ 166 (406)
Q Consensus 88 ~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~-~~~~~~~~ae~~~~~~~~ 166 (406)
.+..+||++|++.. .|...|++...++|+.|+++|+++|+|||++- |-. +..+-.++++...++.++
T Consensus 13 ~~~~~vAv~Qm~S~--------~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d----Fi~~n~~esi~Lae~l~~k~m~ 80 (295)
T KOG0807|consen 13 SKLKRVAVAQMTSS--------NDLTKNLATCKELISEAAQKGAKLIFLPEAFD----FIGQNPLESIELAEPLDGKFME 80 (295)
T ss_pred cccceeEEEeeccc--------hHHHHHHHHHHHHHHHHHHcCCCEEEcchhhh----hhcCCcccceecccccChHHHH
Confidence 34589999999875 79999999999999999999999999999854 222 222345688887899999
Q ss_pred HHHHHHHhcCcEEEeec-eeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCC-----CCCCcccceecCCCCCceEEc
Q 041243 167 FLQELARKYNMVIISPI-LERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRV-----GDFNESTYYMEGNTGHPVFET 240 (406)
Q Consensus 167 ~l~~lAkk~~i~Iv~G~-~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~-----g~f~E~~~~~~G~~~~~vf~t 240 (406)
..+++|++++|++-.|. .++.++...++||+-++|+.+|+++..|+|.||+.+ +...|+..-+||....+.++|
T Consensus 81 ~y~elar~~nIwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~t 160 (295)
T KOG0807|consen 81 QYRELARSHNIWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDT 160 (295)
T ss_pred HHHHHHHhcCeeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCC
Confidence 99999999999998765 555543346899999999999999999999999765 356788899999987788999
Q ss_pred CCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCC
Q 041243 241 AFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDG 320 (406)
Q Consensus 241 ~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G 320 (406)
+-||+|..||||++|||++..+...||+|+..|||+....++.+|..+.|+||||++||||++..+|..+ -
T Consensus 161 P~GklGlaICYDiRFpE~sl~LR~~gA~iLtyPSAFT~~TG~AHWEiLlRARAietQCYVvaaaQ~G~Hn---------e 231 (295)
T KOG0807|consen 161 PLGKLGLAICYDIRFPELSLKLRKMGAQILTYPSAFTIKTGEAHWEILLRARAIETQCYVVAAAQVGKHN---------E 231 (295)
T ss_pred cccccceeeeeeccCchHHHHHHHcCCcEEeccchhhhcccHHHHHHHHHHHHhhcceEEEehhhccccc---------c
Confidence 9999999999999999999999999999999999998888999999999999999999999999999864 1
Q ss_pred CCCCCCCcccceeeEEECCCCCeeccCCCC-CceEEEEEeehhHHHHHHhhcCCCccCchHHHHHH
Q 041243 321 KPQHKDFGHFYGSSHFSAPDGSCTPSLSRF-RDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEM 385 (406)
Q Consensus 321 ~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~-~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~ 385 (406)
| ...||+|.|+||.|.+++..+.. ..+++.||||++.++.+|.++|+..+||+|+|..+
T Consensus 232 K------R~SyGhSMiVDPWGtVva~~se~~~~~l~~AdiDlslld~lr~~mP~~~hRr~dly~~~ 291 (295)
T KOG0807|consen 232 K------RESYGHSMIVDPWGTVVARCSERTGPGLILADIDLSLLDSLRTKMPLFNHRRNDLYTLF 291 (295)
T ss_pred h------hhccCcceEEcchhhhheecCCCCCCceEEEEccHHHHHHHHHhCchhhhcccchhhhh
Confidence 1 35799999999999999998743 48999999999999999999999999999999754
No 33
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=1.7e-42 Score=329.20 Aligned_cols=249 Identities=33% Similarity=0.565 Sum_probs=218.8
Q ss_pred EEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHH
Q 041243 93 VGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELA 172 (406)
Q Consensus 93 ValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lA 172 (406)
||++|+++.. ++.++|++++.++++.|.++|+|||||||++++||.+..... ...++........+.|+++|
T Consensus 1 ia~~Q~~~~~-------~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~-~~~~~~~~~~~~~~~l~~~a 72 (253)
T cd07197 1 IAAVQLAPKI-------GDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKE-DLDLAEELDGPTLEALAELA 72 (253)
T ss_pred CEEEEccCCC-------CCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchh-hhhhcccCCchHHHHHHHHH
Confidence 6899998763 789999999999999999999999999999999996543211 00133344467899999999
Q ss_pred HhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEeccC
Q 041243 173 RKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYG 252 (406)
Q Consensus 173 kk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICyD 252 (406)
+++++.|++|+.+++ ++++||++++++++|.++++|+|.||++ |.|..+|.+|+. ..+|+++++|||++||||
T Consensus 73 ~~~~i~ii~G~~~~~---~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~-~~~f~~~~~~ig~~IC~d 145 (253)
T cd07197 73 KELGIYIVAGIAEKD---GDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDE-FPVFDTPGGKIGLLICYD 145 (253)
T ss_pred HHhCeEEEeeeEEcc---CCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCC-CceEEcCCceEEEEEEec
Confidence 999999999999765 5689999999999999999999999987 678889999997 899999999999999999
Q ss_pred CcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccce
Q 041243 253 RHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYG 332 (406)
Q Consensus 253 ~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G 332 (406)
.+||+.++.+..+|+|+|++|+++.... ..+|..++++||+||++++++||++|... + ..++|
T Consensus 146 ~~~~~~~~~~~~~g~dli~~ps~~~~~~-~~~~~~~~~~~A~e~~~~vv~~n~~G~~~---------~-------~~~~G 208 (253)
T cd07197 146 LRFPELARELALKGADIILVPAAWPTAR-REHWELLLRARAIENGVYVVAANRVGEEG---------G-------LEFAG 208 (253)
T ss_pred CCCcHHHHHHHHCCCcEEEECCcCCCcc-hHHHHHHHHHHHHHhCCeEEEecCCCCCC---------C-------ccccc
Confidence 9999999999999999999999987553 56888999999999999999999999852 1 57899
Q ss_pred eeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCC
Q 041243 333 SSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFR 374 (406)
Q Consensus 333 ~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~ 374 (406)
.|+|++|+|++++..+.+ +++++++||++.++..|..|+..
T Consensus 209 ~S~i~~p~G~~~~~~~~~-~~~~~~~id~~~~~~~r~~~~~~ 249 (253)
T cd07197 209 GSMIVDPDGEVLAEASEE-EGILVAELDLDELREARKRWSYL 249 (253)
T ss_pred eeEEECCCCceeeecCCC-CcEEEEEeCHHHHHHHHhhCCcc
Confidence 999999999999988877 89999999999999999988443
No 34
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=1.9e-43 Score=339.06 Aligned_cols=254 Identities=21% Similarity=0.270 Sum_probs=210.9
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQEL 171 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~l 171 (406)
|||++|+++. .+|.++|++++.++++.|+++|+|||||||++++||........ ..+.+ ...+.++.|.+.
T Consensus 1 ria~~Q~~~~-------~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~-~~~~~-~~~~~~~~la~~ 71 (261)
T cd07570 1 RIALAQLNPT-------VGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLR-PDFLE-AAEEALEELAAA 71 (261)
T ss_pred CEEEEeCCCc-------CCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhC-HHHHH-HHHHHHHHHHHh
Confidence 6999999865 37899999999999999999999999999999999953210000 00100 012345555555
Q ss_pred HHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEecc
Q 041243 172 ARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICY 251 (406)
Q Consensus 172 Akk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICy 251 (406)
+++++++|++|+.++. ++++||++++| ++|+++++|+|+||++++.+.|..+|.+|+. ..+|+++++|||++|||
T Consensus 72 ~~~~~i~ii~G~~~~~---~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~ 146 (261)
T cd07570 72 TADLDIAVVVGLPLRH---DGKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFTPGDK-PDVLFFKGLRIGVEICE 146 (261)
T ss_pred cccCCcEEEEeceEec---CCCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCccCCC-CCeEEECCEEEEEEeec
Confidence 6667999999998876 57899999999 6999999999999999988899999999996 79999999999999999
Q ss_pred CCcchHH-HHHHHHCCCcEEEEcCCCCCCCC-cCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcc
Q 041243 252 GRHHPLN-WLAFGLNGAEIVFNPSATVGELS-EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGH 329 (406)
Q Consensus 252 D~~~Pe~-~~~~~~~Gadii~~Psa~~~~~~-~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~ 329 (406)
|.+||+. ++.++++|||+|++|++++...+ ..+|..+.++||+||++|++.+|++|... + ..
T Consensus 147 D~~fpe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~---------~-------~~ 210 (261)
T cd07570 147 DLWVPDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQD---------D-------LV 210 (261)
T ss_pred ccCCCCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCCc---------e-------EE
Confidence 9999999 99999999999999999764332 34677889999999999999999998741 2 46
Q ss_pred cceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccC
Q 041243 330 FYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTA 377 (406)
Q Consensus 330 ~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~ 377 (406)
|.|.|.|++|+|+++++++.. +.+++++|++.++.+|..+++..+.
T Consensus 211 ~~G~S~ii~p~G~vl~~~~~~--~~~~~~id~~~~~~~r~~~~~~~~~ 256 (261)
T cd07570 211 FDGGSFIADNDGELLAEAPRF--EEDLADVDLDRLRSERRRNSSFLDE 256 (261)
T ss_pred EECceEEEcCCCCEEEecCcc--eEEEEEEEEecCcccccccCCCccc
Confidence 899999999999999887644 7899999999999999888665443
No 35
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=9.6e-41 Score=322.85 Aligned_cols=232 Identities=20% Similarity=0.247 Sum_probs=200.4
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQE 170 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~ 170 (406)
+|||++|+++...+.. ..++.+.|++++.++++.|+++|+|||||||++++||. ...++.++.|++
T Consensus 1 ~~ia~~Q~~~~~~~~~-~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~-------------~~~~~~~~~l~~ 66 (270)
T cd07571 1 LRVALVQGNIPQDEKW-DPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDL-------------QRDPDALARLAR 66 (270)
T ss_pred CeEEEEeCCCCccccc-CHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccc-------------ccCHHHHHHHHH
Confidence 5899999998753311 14689999999999999999999999999999999883 123578999999
Q ss_pred HHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCC---------------CcccceecCCCCC
Q 041243 171 LARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDF---------------NESTYYMEGNTGH 235 (406)
Q Consensus 171 lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f---------------~E~~~~~~G~~~~ 235 (406)
+|++++++|++|+.+++.. ++++||++++|+++|+++++|+|+||++++++ .|..+|.+|+. .
T Consensus 67 ~ak~~~i~ii~G~~~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~-~ 144 (270)
T cd07571 67 AARAVGAPLLTGAPRREPG-GGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTG-P 144 (270)
T ss_pred HHHhcCCeEEEeeeeeccC-CCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCC-C
Confidence 9999999999999887632 25899999999999999999999999987654 47789999996 8
Q ss_pred ceEEcCC-ceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCC--CCCC-CcCcHHHHHHHHHHHcCcEEEEECCCCCCCC
Q 041243 236 PVFETAF-GKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSAT--VGEL-SEPMWPIEARNAAIANSYFVGSINRVGTEVF 311 (406)
Q Consensus 236 ~vf~t~~-gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~--~~~~-~~~~w~~~~r~rAien~~~vv~aN~~G~~~~ 311 (406)
.+|++++ +|+|++||||.+||++++.++.+|||+|++|+++ .... ...+|..++++||+||++|++.||++|
T Consensus 145 ~vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G---- 220 (270)
T cd07571 145 QPLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAANTG---- 220 (270)
T ss_pred CccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcCCe----
Confidence 9999999 9999999999999999999999999999999983 2222 334666788999999999999999644
Q ss_pred CCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhH
Q 041243 312 PNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNL 363 (406)
Q Consensus 312 ~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~ 363 (406)
.|.|++|+|+++++++..++++++++||++.
T Consensus 221 ---------------------~S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~ 251 (270)
T cd07571 221 ---------------------ISAVIDPDGRIVARLPLFEAGVLVAEVPLRT 251 (270)
T ss_pred ---------------------eeEEECCCCcEEeecCCCcceEEEEEeccCC
Confidence 4999999999999998888999999999876
No 36
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=4.5e-39 Score=339.18 Aligned_cols=240 Identities=21% Similarity=0.267 Sum_probs=206.3
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQE 170 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~ 170 (406)
||||++|+++. .++.+.|++++.++++.|+++|+|||||||++++||....... ...+ .....+.+++
T Consensus 1 mkIAl~Q~~~~-------~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~-~~~~----~~~~~~~l~~ 68 (540)
T PRK13981 1 LRIALAQLNPT-------VGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLL-RPAF----LAACEAALER 68 (540)
T ss_pred CEEEEEeCCCC-------CCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhc-CHHH----HHHHHHHHHH
Confidence 79999999865 4899999999999999999999999999999999995321000 0011 1234566777
Q ss_pred HHHh--cCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEE
Q 041243 171 LARK--YNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVN 248 (406)
Q Consensus 171 lAkk--~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ 248 (406)
+|++ ++++|++|++++. ++++||++++|+ +|+++++|+|+|||+++.|.|..+|.+|+. ..+|+++++|||++
T Consensus 69 La~~~~~~i~ii~G~~~~~---~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~-~~~~~~~g~rigv~ 143 (540)
T PRK13981 69 LAAATAGGPAVLVGHPWRE---GGKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFAPGPE-PGVVELKGVRIGVP 143 (540)
T ss_pred HHHhcCCCCEEEEeCcEee---CCcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCccccccCCCC-ceEEEECCEEEEEE
Confidence 7777 7999999998775 578999999997 899999999999999999999999999997 78999999999999
Q ss_pred eccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCc-CcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q 041243 249 ICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSE-PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDF 327 (406)
Q Consensus 249 ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~-~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~ 327 (406)
||||.+||++++.++.+|||+|++|++++...+. ..|..++++||+||++|++++|++|.+. +
T Consensus 144 IC~D~~~pe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~~---------~------- 207 (540)
T PRK13981 144 ICEDIWNPEPAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQD---------E------- 207 (540)
T ss_pred EehhhcCCcHHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCCC---------c-------
Confidence 9999999999999999999999999998755443 4567889999999999999999999752 1
Q ss_pred cccceeeEEECCCCCeeccCCCCCceEEEEEeehhH
Q 041243 328 GHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNL 363 (406)
Q Consensus 328 ~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~ 363 (406)
..|.|.|+|++|+|+++.+++.++++++++++|++.
T Consensus 208 ~~f~G~S~i~dp~G~il~~~~~~~e~~l~~did~~~ 243 (540)
T PRK13981 208 LVFDGASFVLNADGELAARLPAFEEQIAVVDFDRGE 243 (540)
T ss_pred eEEeCceEEECCCCCEeeecCCCCCcEEEEEEeecC
Confidence 479999999999999999998888999999999954
No 37
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=3.6e-38 Score=339.31 Aligned_cols=265 Identities=18% Similarity=0.192 Sum_probs=215.9
Q ss_pred cCCCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHH
Q 041243 85 LREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGES 164 (406)
Q Consensus 85 ~~~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~ 164 (406)
+...+.||||++|+++. .+|.+.|++++.++++.|+++|||||||||+|++||...... ....+.+.. .+.
T Consensus 7 ~~~~~~mrIAlaQ~~~~-------~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~-~~~~~~~~~-~~~ 77 (679)
T PRK02628 7 IYRHGFVRVAAATPKVR-------VADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLF-LQDTLLDAV-EDA 77 (679)
T ss_pred hhhCCcEEEEEEeCCcc-------cCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhh-ccHHHHHhh-HHH
Confidence 34568999999999875 489999999999999999999999999999999999632110 001122211 367
Q ss_pred HHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCC---------
Q 041243 165 TQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGH--------- 235 (406)
Q Consensus 165 ~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~--------- 235 (406)
++.|+++|++++++|++|++++. ++++||++++|+ +|++++.|+|.|||.++.|.|++||.+|+...
T Consensus 78 l~~L~~~a~~~~i~ivvG~p~~~---~~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~ 153 (679)
T PRK02628 78 LATLVEASADLDPLLVVGAPLRV---RHRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQ 153 (679)
T ss_pred HHHHHHHHhhcCEEEEEeeEEEE---CCEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCe
Confidence 88999999999999999988765 568999999997 79999999999999998999999999998521
Q ss_pred -------ceEEc---CCceEEEEeccCCcchHH-HHHHHHCCCcEEEEcCCCCCCCCcCcHH-HHHHHHHHHcCcEEEEE
Q 041243 236 -------PVFET---AFGKIAVNICYGRHHPLN-WLAFGLNGAEIVFNPSATVGELSEPMWP-IEARNAAIANSYFVGSI 303 (406)
Q Consensus 236 -------~vf~t---~~gkigv~ICyD~~~Pe~-~~~~~~~Gadii~~Psa~~~~~~~~~w~-~~~r~rAien~~~vv~a 303 (406)
.+|++ +++|||+.||||+|||+. .+.++++|||||++|++|+...+...|. .+.+++|.+++++++.+
T Consensus 154 ~vpfG~~~vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~ 233 (679)
T PRK02628 154 EVPFGTDLLFEAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYA 233 (679)
T ss_pred eeccCCceeEEecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEE
Confidence 25655 688999999999999997 5889999999999999998777766666 56677888875555555
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCC--CCceEEEEEeehhHHHHHHhhcCCCccCc
Q 041243 304 N-RVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSR--FRDGLLISDMDLNLCRQLKDKWGFRMTAR 378 (406)
Q Consensus 304 N-~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~--~~e~llvaeidl~~~~~~r~~~~~~~~~r 378 (406)
| ++|... ++ ..|.|+|.|++ +|++++++++ .++++++++||++.++..|.+++++.++|
T Consensus 234 n~~~G~~~--------~~-------~vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~d~~ 295 (679)
T PRK02628 234 AAGVGEST--------TD-------LAWDGQTLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFDDNA 295 (679)
T ss_pred ecccccCC--------CC-------eEEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCcccch
Confidence 5 566431 11 57999999998 9999998874 34569999999999999999888887776
No 38
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-38 Score=302.54 Aligned_cols=273 Identities=21% Similarity=0.259 Sum_probs=238.6
Q ss_pred CCCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCC----
Q 041243 86 REPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD---- 161 (406)
Q Consensus 86 ~~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~---- 161 (406)
....+++||++|....+ .+...|+..++..++.|+++|++||||||.+++||.+. ..+..++|..+
T Consensus 9 ~~~~~~~~a~vq~~~~l-------~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~---~sf~py~E~i~~~~~ 78 (298)
T KOG0806|consen 9 VILPNATEALVSLEEAL-------LLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFT---ESFYPYLEDIPDPGC 78 (298)
T ss_pred Ccccccceeeeecccch-------hhhhhhHHHHHHHHHHHHhcCCeEEEChhhcccccccc---ccccchhhhCCCccc
Confidence 44578999999998763 68999999999999999999999999999999999873 22334455444
Q ss_pred -cHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCC-----CCCcccceecCCCCC
Q 041243 162 -GESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVG-----DFNESTYYMEGNTGH 235 (406)
Q Consensus 162 -~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g-----~f~E~~~~~~G~~~~ 235 (406)
+++.+.++++|++++++++.|.++... .++++||++.+++++|+.+++|||+|++..- .|.|+..|.+|.. +
T Consensus 79 ~~ps~~~ls~va~~~~~~~i~g~i~~~~-~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~-f 156 (298)
T KOG0806|consen 79 RDPSRQGLSEVAERLSCYIIGGSIEEEA-LGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ-F 156 (298)
T ss_pred CChhHHHhHHHHhhceEEEecCcchhhc-ccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC-C
Confidence 589999999999999999999987765 5789999999999999999999999998641 3678899999998 8
Q ss_pred ceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCC---CCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCC
Q 041243 236 PVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATV---GELSEPMWPIEARNAAIANSYFVGSINRVGTEVFP 312 (406)
Q Consensus 236 ~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~---~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~ 312 (406)
.++++..||||+.||||++||++++.++++||++|+.|++|. ......+|..++++||..|..+++.++..++..
T Consensus 157 ~~~~~~~gkfGi~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~s-- 234 (298)
T KOG0806|consen 157 TVVDTSYGKFGIFICFDIRFYDPAMILVKDGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVHAPSPARTGS-- 234 (298)
T ss_pred CcccCCCCceEEEEEecccccchHHHHHHcCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeeeccCcCcCCc--
Confidence 999999999999999999999999999999999999999998 555678999999999999999999999887742
Q ss_pred CCCCCCCCCCCCCCCcccce-eeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHH
Q 041243 313 NPFTSGDGKPQHKDFGHFYG-SSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEML 386 (406)
Q Consensus 313 ~~~~~~~G~~~~~~~~~~~G-~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~ 386 (406)
|. +..+| +|.+++|.|+++...... +.++++++|++.+.+.|+.|+...++|+|+|...+
T Consensus 235 -------~~------y~~~gshs~~~~p~gkvl~a~~~~-~e~~~a~~d~~~~~~~rq~~~~~~~r~~d~y~~~~ 295 (298)
T KOG0806|consen 235 -------GI------YAPRGSHSIMVNPTGKVLAAAVEK-EEIIYADVDPSAIASRRQGLPVFRQRRLDLYSLDL 295 (298)
T ss_pred -------ee------eecCCcceeecCCcceEeeeccCC-CccccccCCHHHHHHHhcccchhhccchhhhhhhc
Confidence 21 45667 899999999999877644 44999999999999999999999999999998654
No 39
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=1e-37 Score=305.21 Aligned_cols=223 Identities=21% Similarity=0.222 Sum_probs=172.1
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhh----CCCeEEEecCCCCCCCCCCcchhHHhhhcCCC-CcHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGV----SGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-DGESTQ 166 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~----~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~-~~~~~~ 166 (406)
|||++|+++. .+|.++|++++.++++.|++ +|+|||||||++++||.+..... ...+++.. .+++++
T Consensus 1 rIA~vQ~~~~-------~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~-~~~~ae~~~~g~~~~ 72 (295)
T cd07566 1 RIACLQLNPQ-------IGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEH-IKPYLEPTTSGPSFE 72 (295)
T ss_pred CEEEEECCCc-------cCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHH-HHHHHHhcCCCHHHH
Confidence 6999999854 37899999999999999988 89999999999999997643221 22333332 478899
Q ss_pred HHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCC---CCcc-ccee------cCCCCCc
Q 041243 167 FLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGD---FNES-TYYM------EGNTGHP 236 (406)
Q Consensus 167 ~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~---f~E~-~~~~------~G~~~~~ 236 (406)
.++++|++++++|++|++++....++++|||+++|+++|+++++|+|+||+.... +.|. .++. +|+....
T Consensus 73 ~l~~lAk~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~ 152 (295)
T cd07566 73 WAREVAKKFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFD 152 (295)
T ss_pred HHHHHHHhcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCcccccccccccccccc
Confidence 9999999999999999988753111479999999999999999999999986421 1222 2333 7765332
Q ss_pred -eEEcCCceEEEEeccCCc---c--h----HHHHHHHHCCCcEEEEcCCCCCCCC--------cCcH---HHHHHHHHH-
Q 041243 237 -VFETAFGKIAVNICYGRH---H--P----LNWLAFGLNGAEIVFNPSATVGELS--------EPMW---PIEARNAAI- 294 (406)
Q Consensus 237 -vf~t~~gkigv~ICyD~~---~--P----e~~~~~~~~Gadii~~Psa~~~~~~--------~~~w---~~~~r~rAi- 294 (406)
++.+.++|||++||||++ | | |++|.++++|||||++|++|....+ ..+| ....++||+
T Consensus 153 ~~~~~~~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~ 232 (295)
T cd07566 153 GGSVDVTLKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEP 232 (295)
T ss_pred ccccCCcceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhcc
Confidence 234458899999999996 7 5 9999999999999999999875432 1134 234455554
Q ss_pred -----HcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccceeeEEEC
Q 041243 295 -----ANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSA 338 (406)
Q Consensus 295 -----en~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~ 338 (406)
||++|+++||++|.+. | ..|+|+|.|+.
T Consensus 233 ~~a~~eN~~~vv~~Nr~G~~~---------~-------~~f~G~S~i~~ 265 (295)
T cd07566 233 LRAEPLEGTQVVFCNRIGTEN---------D-------TLYAGSSAVIG 265 (295)
T ss_pred cccCCCCceEEEEEeccCccC---------C-------ceecCccceee
Confidence 9999999999999862 2 47889999884
No 40
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=3.3e-36 Score=323.84 Aligned_cols=256 Identities=14% Similarity=0.116 Sum_probs=196.2
Q ss_pred ccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCC-CCcHHHHHH
Q 041243 90 VVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEP-VDGESTQFL 168 (406)
Q Consensus 90 ~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~-~~~~~~~~l 168 (406)
.||||++|+++. .+|.+.|++++.++++.|+++|||||||||+|++||. |.. .+.+.+.. ...+.++.|
T Consensus 3 ~mrIAlaQl~~~-------~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~-~~D--l~~~~~~~~~~~~~L~~L 72 (700)
T PLN02339 3 LLKVATCNLNQW-------AMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYG-CED--HFLELDTVTHSWECLAEI 72 (700)
T ss_pred eEEEEEEeCCCC-------CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCC-hHH--HhhChhHHHHHHHHHHHH
Confidence 799999999854 3799999999999999999999999999999999996 211 11111100 002344444
Q ss_pred HHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCC--------------
Q 041243 169 QELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTG-------------- 234 (406)
Q Consensus 169 ~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~-------------- 234 (406)
.+.++.++++|++|++++. ++++||+++++. +|++++.|+|.|||.++.|.|.+||.+|+..
T Consensus 73 a~~a~~~~i~vvvG~p~~~---~~~lYN~a~vi~-~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~ 148 (700)
T PLN02339 73 LVGDLTDGILCDIGMPVIH---GGVRYNCRVFCL-NRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAE 148 (700)
T ss_pred HhhcccCCeEEEEeeeEEE---CCeEEEEEEEEe-CCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhh
Confidence 4444578999999998766 467999999995 8999999999999999999999999998631
Q ss_pred ----------CceEEcCCceEEEEeccCCcchHHHHH-HHHCCCcEEEEcCCCCCCCCc--CcHHHHHHHHHHHcCcEEE
Q 041243 235 ----------HPVFETAFGKIAVNICYGRHHPLNWLA-FGLNGAEIVFNPSATVGELSE--PMWPIEARNAAIANSYFVG 301 (406)
Q Consensus 235 ----------~~vf~t~~gkigv~ICyD~~~Pe~~~~-~~~~Gadii~~Psa~~~~~~~--~~w~~~~r~rAien~~~vv 301 (406)
..+|++++++||+.||||+|||+..+. ++++|||||+||+++....+. .+|..+....+..+++| +
T Consensus 149 ~~g~~~vpfg~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~y-v 227 (700)
T PLN02339 149 ATSQKSVPFGDGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVY-L 227 (700)
T ss_pred ccCCceeccCcceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcE-E
Confidence 124456677999999999999998885 999999999999986543321 22333334444455777 5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCC---CceEEEEEeehhHHHHHHhhcCCCcc
Q 041243 302 SINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRF---RDGLLISDMDLNLCRQLKDKWGFRMT 376 (406)
Q Consensus 302 ~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~---~e~llvaeidl~~~~~~r~~~~~~~~ 376 (406)
+||++|.+. + ...|.|+|.| +|+|+++++.+++ ++.+++++||++.++..|.+.+.+.+
T Consensus 228 yaN~~Ge~~---------~------~lvf~G~S~I-~~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~ 289 (700)
T PLN02339 228 YANQRGCDG---------G------RLYYDGCACI-VVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFRE 289 (700)
T ss_pred EEcCCccCC---------C------ceEEcCceEE-eCCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhh
Confidence 799998642 1 1467788877 5899999988764 46799999999999999987776644
No 41
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-35 Score=269.30 Aligned_cols=289 Identities=25% Similarity=0.364 Sum_probs=237.5
Q ss_pred cCCCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCc--------ch----h-
Q 041243 85 LREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCT--------RE----K- 151 (406)
Q Consensus 85 ~~~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~--------~~----~- 151 (406)
.+...++||+++|.... ..+..+.++++++.+..|++.|+.||+|||+++.||.-+. +. +
T Consensus 12 ~d~~s~~~v~ivQ~~t~-------~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~e 84 (337)
T KOG0805|consen 12 VDSSSIVRVTIVQASTV-------YNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDE 84 (337)
T ss_pred cCcccceEEEEEEcccC-------CCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHH
Confidence 45567899999999765 3677889999999999999999999999999999986221 11 1
Q ss_pred --HHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCccccee
Q 041243 152 --RWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYM 229 (406)
Q Consensus 152 --~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~ 229 (406)
.+..-|-...++..+.|..+|+++++.++.|.+||+ +-++|-|+++++|.|..+|+|||..+.. .|+..|-
T Consensus 85 f~kY~a~AIev~gpEv~~l~~la~~~~v~lv~G~iEre---g~TLYCt~~f~~p~g~~lGKHRKlmPTa----lERciWG 157 (337)
T KOG0805|consen 85 FRKYHASAIEVPGPEVERLAELAKKNNVYLVMGAIERE---GYTLYCTVLFFSPQGQFLGKHRKLMPTA----LERCIWG 157 (337)
T ss_pred HHHHHHHhhcCCChHHHHHHHHhhcCCeEEEEEEEecc---ccEEEEEEEEECCCccccccccccccch----hhheeec
Confidence 133334445689999999999999999999999998 7899999999999999999999997654 6888887
Q ss_pred cCC-CCCceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCC
Q 041243 230 EGN-TGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGT 308 (406)
Q Consensus 230 ~G~-~~~~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~ 308 (406)
.|+ ...|||+|+-||||-.||||.+.|.+...+..+|.+|.+.|++. ....|..-++.-|.|-+|||++++..-.
T Consensus 158 qGDGSTiPV~dT~iGKIG~AICWEN~MPl~R~alY~KgieIycAPT~D----~r~~w~~sM~~IAlEG~cFvlSA~QF~k 233 (337)
T KOG0805|consen 158 QGDGSTIPVYDTPIGKIGAAICWENRMPLYRTALYAKGIEIYCAPTAD----GRKEWQSSMLHIALEGGCFVLSACQFCK 233 (337)
T ss_pred cCCCcccceeecccchhceeeecccccHHHHHHHHhcCcEEEeccCCC----CcHHHHHhhhheeecCceEEEEhhhhcc
Confidence 665 23899999999999999999999999999999999999999984 3568999999999999999999997655
Q ss_pred CC-CCCC---CCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCC-ccCchHHHH
Q 041243 309 EV-FPNP---FTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFR-MTARYELYA 383 (406)
Q Consensus 309 ~~-~~~~---~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~-~~~r~dlY~ 383 (406)
.. ||.. ..++-++...+|.....|+|.|++|.|.++++....+|+++.+|+|+..+..+|=.++.. ...|||++.
T Consensus 234 ~~d~p~~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~VlagP~~~~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVFq 313 (337)
T KOG0805|consen 234 RKDFPDHPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDIARAKLDFDVVGHYSRPDVFQ 313 (337)
T ss_pred cccCCCCchhhcccchhccCCCcceecCCcEEEccccceecCCCcCccceEEEeccchhhhhhccccccccccCCCceEE
Confidence 42 3321 122223333357788899999999999999998889999999999999998777555554 448999998
Q ss_pred HHHhcccC
Q 041243 384 EMLANYSK 391 (406)
Q Consensus 384 ~~~~~~~~ 391 (406)
...++..+
T Consensus 314 LtVnE~~~ 321 (337)
T KOG0805|consen 314 LTVNEHPR 321 (337)
T ss_pred EEeccCCC
Confidence 77766533
No 42
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=100.00 E-value=1.2e-34 Score=303.42 Aligned_cols=235 Identities=20% Similarity=0.208 Sum_probs=191.6
Q ss_pred CccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHH
Q 041243 89 RVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFL 168 (406)
Q Consensus 89 ~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l 168 (406)
.++|||++|.++.... ....++.++|++++.++++++ ++|+|+|||||.+++++. +...++..+.+
T Consensus 218 ~~~~ValvQ~ni~~~~-k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~------------~~~~~~~~~~l 283 (505)
T PRK00302 218 PALKVALVQGNIPQSL-KWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL------------EDLPQAFLKAL 283 (505)
T ss_pred CCcEEEEECCCCChhc-ccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc------------ccccHHHHHHH
Confidence 4799999999987421 122257788999999999844 578999999999875541 01123567789
Q ss_pred HHHHHhcCcEEEeeceeeccCCCC-eeEEEEEEEcCCCcEEEeeeccCCCCCCCCC---------------cccceecCC
Q 041243 169 QELARKYNMVIISPILERDVNHGD-TIWNTAIIIGNHGNIIGKHRKNHIPRVGDFN---------------ESTYYMEGN 232 (406)
Q Consensus 169 ~~lAkk~~i~Iv~G~~e~~~~~~~-~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~---------------E~~~~~~G~ 232 (406)
+++|+++++.++.|..++++..++ ++||+++++++ |+++++|+|+||.++|++. +..+|.+|+
T Consensus 284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~ 362 (505)
T PRK00302 284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP 362 (505)
T ss_pred HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence 999999999999998865432123 69999999998 7789999999999988642 113688998
Q ss_pred CCCceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCC--CCCCCC-cCcHHHHHHHHHHHcCcEEEEECCCCCC
Q 041243 233 TGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSA--TVGELS-EPMWPIEARNAAIANSYFVGSINRVGTE 309 (406)
Q Consensus 233 ~~~~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa--~~~~~~-~~~w~~~~r~rAien~~~vv~aN~~G~~ 309 (406)
.+.++++++++|+|++||||..||+..|.++.+|||++++|+| |.+... ..+|..++++||+||+++++++|++|.
T Consensus 363 ~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~~vvra~n~G~- 441 (505)
T PRK00302 363 YVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGRPLIRATNTGI- 441 (505)
T ss_pred CCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCCceEEecCcee-
Confidence 5578999999999999999999999999999999999999999 443332 346777899999999999999986544
Q ss_pred CCCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhH
Q 041243 310 VFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNL 363 (406)
Q Consensus 310 ~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~ 363 (406)
|.++||+|+++++++..+++++++++|+..
T Consensus 442 ------------------------Saiidp~G~i~~~~~~~~~~~l~~~i~~~~ 471 (505)
T PRK00302 442 ------------------------TAVIDPLGRIIAQLPQFTEGVLDGTVPPTT 471 (505)
T ss_pred ------------------------eEEECCCCCEeeecCCCceeEEEEEeccCC
Confidence 999999999999998889999999999853
No 43
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=100.00 E-value=8.1e-34 Score=288.22 Aligned_cols=216 Identities=20% Similarity=0.155 Sum_probs=177.8
Q ss_pred CCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHH
Q 041243 88 PRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQF 167 (406)
Q Consensus 88 ~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~ 167 (406)
.+++|||++|.++.... ....++.+++++++.++++.|.+ ++|||||||.++++|.. ...+...+.
T Consensus 157 ~~~~~ValvQ~n~~~~~-k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~------------~~~~~~~~~ 222 (391)
T TIGR00546 157 GPTLNVALVQPNIPQDL-KFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLE------------NSPQKLADR 222 (391)
T ss_pred CCcceEEEEcCCCCccc-ccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchh------------hCcHHHHHH
Confidence 45799999999997521 22235678999999999998877 89999999999887621 011236788
Q ss_pred HHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCc----------------ccceecC
Q 041243 168 LQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNE----------------STYYMEG 231 (406)
Q Consensus 168 l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E----------------~~~~~~G 231 (406)
++++|+++++.|++|+.+.++..++++||++++++++|+++++|+|+||.++|++.. ..+|.+|
T Consensus 223 l~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G 302 (391)
T TIGR00546 223 LKLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRG 302 (391)
T ss_pred HHHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCC
Confidence 999999999999999876543212379999999999999999999999999876432 2468899
Q ss_pred CCCCceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCC--CCCC-CcCcHHHHHHHHHHHcCcEEEEECCCCC
Q 041243 232 NTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSAT--VGEL-SEPMWPIEARNAAIANSYFVGSINRVGT 308 (406)
Q Consensus 232 ~~~~~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~--~~~~-~~~~w~~~~r~rAien~~~vv~aN~~G~ 308 (406)
+. .++|+++++|+|++||||..||+..|.++++|||++++|+|+ .+.. ...+|..++++||+||+++++++|++|.
T Consensus 303 ~~-~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RAiEn~~~vvra~n~G~ 381 (391)
T TIGR00546 303 PG-PQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRATNTGI 381 (391)
T ss_pred CC-CCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecchhhcCCCCChHHHHHHHHHHHHHhCCcEEEecCCce
Confidence 86 899999999999999999999999999999999999999984 3332 3457778899999999999999997654
Q ss_pred CCCCCCCCCCCCCCCCCCCcccceeeEEECCCCCe
Q 041243 309 EVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSC 343 (406)
Q Consensus 309 ~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i 343 (406)
|+|+||+|++
T Consensus 382 -------------------------S~vidp~G~i 391 (391)
T TIGR00546 382 -------------------------SAVIDPRGRT 391 (391)
T ss_pred -------------------------eEEECCCCCC
Confidence 9999999985
No 44
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=100.00 E-value=8.5e-33 Score=251.39 Aligned_cols=176 Identities=34% Similarity=0.550 Sum_probs=153.0
Q ss_pred EEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCC---Ccc-hhHHhhhcCCCCcHHHHH
Q 041243 92 RVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAF---CTR-EKRWCEFAEPVDGESTQF 167 (406)
Q Consensus 92 rValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~---~~~-~~~~~~~ae~~~~~~~~~ 167 (406)
|||++|.++.. ...+.++|++++.++++.|+++|+|||||||++++||.. +.. ...+..+++...+++++.
T Consensus 1 ~VA~~Q~~~~~-----~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (186)
T PF00795_consen 1 RVALVQLNIDQ-----SWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLER 75 (186)
T ss_dssp EEEEEEB-B-S-----STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHH
T ss_pred CEEEEECCccC-----ccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHH
Confidence 79999998632 358999999999999999999999999999999999942 322 223555666666889999
Q ss_pred HHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCC-cccceecCCCCCceEEcC-----
Q 041243 168 LQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFN-ESTYYMEGNTGHPVFETA----- 241 (406)
Q Consensus 168 l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~-E~~~~~~G~~~~~vf~t~----- 241 (406)
|+++|+++++.+++|+.+++ ++++||++++|+++|.++++|+|+||++++++. |+.+|.+|+....+|+++
T Consensus 76 l~~~a~~~~~~i~~G~~~~~---~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~ 152 (186)
T PF00795_consen 76 LAELAKENGITIVAGIPERD---DGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFG 152 (186)
T ss_dssp HHHHHHHHTSEEEEEEEEEE---TTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEET
T ss_pred HHHHHHhcCCcccccccccc---cccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeec
Confidence 99999999999999998886 678999999999999999999999999999998 899999986657788876
Q ss_pred CceEEEEeccCCcchHHHHHHHHCCCcEEEEcCC
Q 041243 242 FGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSA 275 (406)
Q Consensus 242 ~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa 275 (406)
++|||++||||.+||++++.++.+||+||++|||
T Consensus 153 g~~ig~~ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 153 GGRIGVLICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp TEEEEEEEGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred cceEEEEEEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 5999999999999999999999999999999986
No 45
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.96 E-value=4.6e-28 Score=247.47 Aligned_cols=192 Identities=17% Similarity=0.123 Sum_probs=154.3
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQE 170 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~ 170 (406)
++|++||.|+++.. ....++.+.+++++.++++.|.+.++|+|||||.+.+.+.. ......+.+++
T Consensus 195 ~~V~lVQ~ni~q~~-Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~-------------~~~~~~~~l~~ 260 (418)
T PRK12291 195 VNIELVNTNIPQDL-KWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALN-------------NSPILLDKLKE 260 (418)
T ss_pred CEEEEEeCCCCccc-ccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchh-------------hCHHHHHHHHH
Confidence 59999999998532 22335667899999999998888899999999998754410 01245667777
Q ss_pred HHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCC----------------CCcccceecCCCC
Q 041243 171 LARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGD----------------FNESTYYMEGNTG 234 (406)
Q Consensus 171 lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~----------------f~E~~~~~~G~~~ 234 (406)
++ .++.+++|....+ ++++|||++++++ |+ ++.|+|.||+++|+ +.|...|.+|+.
T Consensus 261 ~~--~~~~ii~G~~~~~---~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~- 332 (418)
T PRK12291 261 LS--HKITIITGALRVE---DGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASK- 332 (418)
T ss_pred hc--cCCcEEEeeeecc---CCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCC-
Confidence 64 5788999987654 4579999999974 87 78999999999885 345668999975
Q ss_pred CceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCC--CCCCC-CcCcHHHHHHHHHHHcCcEEEEECCCCC
Q 041243 235 HPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSA--TVGEL-SEPMWPIEARNAAIANSYFVGSINRVGT 308 (406)
Q Consensus 235 ~~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa--~~~~~-~~~~w~~~~r~rAien~~~vv~aN~~G~ 308 (406)
.+++++++.|+|++||||..||+..+ +|||+++++|| |.+.. +..+|...+|+||+||++++++++++|.
T Consensus 333 ~~~~~~~g~~ig~lICYE~~Fpel~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~pvvratNtGi 405 (418)
T PRK12291 333 FSDFTLDGVKFRNAICYEATSEELYE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKTIYHSANGSP 405 (418)
T ss_pred CcceeeCCeEEEEEEeeeecchHhhc----cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCcEEEEcCCce
Confidence 78999999999999999999999887 89999999998 44443 2347778889999999999999998766
No 46
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.3e-26 Score=241.42 Aligned_cols=241 Identities=19% Similarity=0.135 Sum_probs=179.7
Q ss_pred ccCCCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHh--hCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCC
Q 041243 84 FLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAG--VSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD 161 (406)
Q Consensus 84 ~~~~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~--~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~ 161 (406)
+....+.++|+++|.||.+.. ....+....+...+......+. .+++|+|||||.+++-... ..
T Consensus 221 ~~~~~~~~~V~lvQ~nI~q~l-k~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~~------------~~- 286 (518)
T COG0815 221 VPVGEPTLTVALVQGNIPQDL-KWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDLT------------RH- 286 (518)
T ss_pred CCCCCCceEEEEecCCCcccc-cCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccchh------------hc-
Confidence 444567899999999998422 1112333344444444444433 3889999999998752210 01
Q ss_pred cHHHHHHHHHHHhcCcEEEeeceeeccCCC-CeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCc---------------c
Q 041243 162 GESTQFLQELARKYNMVIISPILERDVNHG-DTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNE---------------S 225 (406)
Q Consensus 162 ~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~-~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E---------------~ 225 (406)
......+.+.+.+.+..++.|+..+.+..+ ..+|||+++++++|+++++|+|+||.|+|++-. .
T Consensus 287 ~~~~~~~~~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~ 366 (518)
T COG0815 287 PDALARLAEALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPM 366 (518)
T ss_pred chHHHHHHHHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhcccc
Confidence 122556778888888888888433221112 259999999999999999999999999986642 2
Q ss_pred cceecCCCCCceEEcCCc-eEEEEeccCCcchHHHHHHHHCCCcEEEEcCC--CCCC-CCcCcHHHHHHHHHHHcCcEEE
Q 041243 226 TYYMEGNTGHPVFETAFG-KIAVNICYGRHHPLNWLAFGLNGAEIVFNPSA--TVGE-LSEPMWPIEARNAAIANSYFVG 301 (406)
Q Consensus 226 ~~~~~G~~~~~vf~t~~g-kigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa--~~~~-~~~~~w~~~~r~rAien~~~vv 301 (406)
..|.+|+. ..++.+.++ ||+++||||..||+..|....+|||+|+|+|| |.+. .+..+|..++++||+|++.+++
T Consensus 367 ~~f~~G~~-~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~i 445 (518)
T COG0815 367 SDFSRGPG-PQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPLV 445 (518)
T ss_pred ccccCCCC-CcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcEE
Confidence 34566886 566666655 69999999999999999999999999999999 3333 3445666788999999999999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHH
Q 041243 302 SINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLC 364 (406)
Q Consensus 302 ~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~ 364 (406)
+++++|. |+|+||+|+++..++.+..+++.+.+.+...
T Consensus 446 RAtNtGi-------------------------SavIdp~Gri~~~l~~~~~~~l~~~v~~~~~ 483 (518)
T COG0815 446 RATNTGI-------------------------SAVIDPRGRILAQLPYFTRGVLDATVPLKTG 483 (518)
T ss_pred EEcCCcc-------------------------eEEECCCCCEEeecCCCCcceeeeeecccCC
Confidence 9998776 9999999999999999999999999887654
No 47
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.89 E-value=2.9e-22 Score=202.49 Aligned_cols=190 Identities=15% Similarity=0.049 Sum_probs=144.2
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQE 170 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~ 170 (406)
.++-.+++++++.. .. +..-.....+.+.++.|.+.|+|+|||||.++++|... ..+.+++
T Consensus 186 ~~w~~v~t~~~~~~-~~--~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~----------------~~~~~~~ 246 (388)
T PRK13825 186 AGWVGVDTQLGRSL-GR--DASLERRRELIATVRAAAAAGARVVVLPESALGFWTPT----------------TERLWRE 246 (388)
T ss_pred CCeEEEECCccccc-Cc--hhhHHHHHHHHHHHHhhcccCCCEEEccCccccccccc----------------ccHHHHH
Confidence 47888888887422 11 22235666777788888889999999999999877310 0112455
Q ss_pred HHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCC-------CcccceecCCCCCceEEcCCc
Q 041243 171 LARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDF-------NESTYYMEGNTGHPVFETAFG 243 (406)
Q Consensus 171 lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f-------~E~~~~~~G~~~~~vf~t~~g 243 (406)
.++++++.|++|..+++ ++++||++++++++|. ...|+|+|+.+++++ .|..++.+|..+.++|++++.
T Consensus 247 ~l~~~~i~II~G~~~~~---~~~~yNsa~v~~~~G~-~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~ 322 (388)
T PRK13825 247 SLRGSDVTVIAGAAVVD---PGGYDNVLVAISAGGG-RILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGR 322 (388)
T ss_pred HHHhCCCeEEEEeeecC---CCCceEEEEEEeCCCC-eeeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCe
Confidence 66899999999988765 4679999999999886 459999999888763 366777777533579999999
Q ss_pred eEEEEeccCCcc--hHHHHHHHHCCCcEEEEcCCC--CCCCCc-CcHHHHHHHHHHHcCcEEEEECC
Q 041243 244 KIAVNICYGRHH--PLNWLAFGLNGAEIVFNPSAT--VGELSE-PMWPIEARNAAIANSYFVGSINR 305 (406)
Q Consensus 244 kigv~ICyD~~~--Pe~~~~~~~~Gadii~~Psa~--~~~~~~-~~w~~~~r~rAien~~~vv~aN~ 305 (406)
|+|++||||..| |+..+. .+|+|+|++|+|. .+.... .++...+++||+|++.+++++.+
T Consensus 323 rvg~lICYE~~F~~pel~~~--~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 323 RAAPLICYEQLLVWPVLQSM--LHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred EEEEEEeeeecCcHHHHHhh--ccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 999999999987 665443 7999999999993 233332 35667889999999999999875
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.56 E-value=2.8e-14 Score=142.82 Aligned_cols=249 Identities=20% Similarity=0.175 Sum_probs=181.9
Q ss_pred CCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCC-CcHHHH
Q 041243 88 PRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-DGESTQ 166 (406)
Q Consensus 88 ~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~-~~~~~~ 166 (406)
.+.++||.++.|. +.-|++.|+++|.+-|+.|++.|+.+=+=||+-++||+ |.. . |.|.- .-..-+
T Consensus 2 ~r~vtvAtc~lNq-------WAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYg-C~D--H---f~E~Dt~~HswE 68 (706)
T KOG2303|consen 2 GRKVTVATCTLNQ-------WALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYG-CED--H---FLESDTLLHSWE 68 (706)
T ss_pred CceEEEEEechhh-------hhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCC-hHH--h---hccchHHHHHHH
Confidence 4789999999873 35799999999999999999999999999999999997 321 1 22211 012233
Q ss_pred HHHHHHHh---cCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCC---------
Q 041243 167 FLQELARK---YNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTG--------- 234 (406)
Q Consensus 167 ~l~~lAkk---~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~--------- 234 (406)
.|.++... .++.+..|++... .+..||..+++ -||+++....|+-|...|.|.|++||++....
T Consensus 69 ~l~~l~~~~~~~~il~diGmPv~h---r~~ryNCrv~~-~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP 144 (706)
T KOG2303|consen 69 MLAELVESPVTQDILCDIGMPVMH---RNVRYNCRVLF-LNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLP 144 (706)
T ss_pred HHHHHHcCCCCCCeeEecCCchhh---hhhhhccceee-cCCeEEEEcccceeccCCCchhhccccccccccccceeecc
Confidence 44444432 4677778998876 67889999998 59999999999999999999999999887642
Q ss_pred ---------------CceEEcCCceEEEEeccCCcchH-HHHHHHHCCCcEEEEcCCCCCCCCcCcHH-HHHHHHHHHcC
Q 041243 235 ---------------HPVFETAFGKIAVNICYGRHHPL-NWLAFGLNGAEIVFNPSATVGELSEPMWP-IEARNAAIANS 297 (406)
Q Consensus 235 ---------------~~vf~t~~gkigv~ICyD~~~Pe-~~~~~~~~Gadii~~Psa~~~~~~~~~w~-~~~r~rAien~ 297 (406)
-.|+++.+--||.-||.|+|.|. .--.++++|++|+.|.|.+...++..... .+..+.....|
T Consensus 145 ~~i~~~~~Q~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~G 224 (706)
T KOG2303|consen 145 RMIQKHTGQETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCG 224 (706)
T ss_pred HHHHHHhCCeeecccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcc
Confidence 01333444458999999999874 34556789999999988765554433222 23333444455
Q ss_pred cEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCC---CCceEEEEEeehhHHHHHHh
Q 041243 298 YFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSR---FRDGLLISDMDLNLCRQLKD 369 (406)
Q Consensus 298 ~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~---~~e~llvaeidl~~~~~~r~ 369 (406)
-..+.+|.-|-+ | |-..|.|.|.| +-+|+++++.+. ..-.++++.+|++.++.+|.
T Consensus 225 GvYlyaNqrGCD----------G-----~RlYydGca~I-a~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~ 283 (706)
T KOG2303|consen 225 GVYLYANQRGCD----------G-----DRLYYDGCAMI-AMNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRA 283 (706)
T ss_pred eEEEeeccCCCC----------C-----ceeEecchhhe-eecceeeeecccccccceEEEEEEecHHHHHHHHh
Confidence 555669998885 3 22456666655 569999998764 34579999999999998884
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=85.77 E-value=5.5 Score=38.94 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=46.6
Q ss_pred HHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
+.+..+.+|+|||+.|-.|..+. ...+...++.-|.+++++++..-..... .+..++=.+.++
T Consensus 161 ~~r~la~~GAdill~ps~~~~~~----------------~~~w~~~~~aRA~En~~~vv~aN~~G~~-~~~~~~G~S~iv 223 (291)
T cd07565 161 IARECAYKGAELIIRIQGYMYPA----------------KDQWIITNKANAWCNLMYTASVNLAGFD-GVFSYFGESMIV 223 (291)
T ss_pred HHHHHHHCCCeEEEECCcCCCCc----------------chHHHHHHHHHHHhcCcEEEEecccccC-CCceeeeeeEEE
Confidence 34444568999999997654221 1235566788899999998854222111 123556678889
Q ss_pred cCCCcEEEe
Q 041243 202 GNHGNIIGK 210 (406)
Q Consensus 202 ~~~G~vl~~ 210 (406)
+|+|+++..
T Consensus 224 dP~G~ila~ 232 (291)
T cd07565 224 NFDGRTLGE 232 (291)
T ss_pred CCCCCEEEe
Confidence 999998753
No 50
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=80.78 E-value=2.3 Score=40.48 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=49.7
Q ss_pred hCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcE
Q 041243 128 VSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNI 207 (406)
Q Consensus 128 ~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~v 207 (406)
+.|++|++||-+|+. .|-+ ..|.-.++.-|-+.+++||..--....+....-|--++||||.|+|
T Consensus 184 ~~gA~iLtyPSAFT~----~TG~-----------AHWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWGtV 248 (295)
T KOG0807|consen 184 KMGAQILTYPSAFTI----KTGE-----------AHWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWGTV 248 (295)
T ss_pred HcCCcEEeccchhhh----cccH-----------HHHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchhhh
Confidence 579999999998652 2222 2355678888999999999764321111122357778999999999
Q ss_pred EEeeeccC
Q 041243 208 IGKHRKNH 215 (406)
Q Consensus 208 l~~y~K~h 215 (406)
++.+.-..
T Consensus 249 va~~se~~ 256 (295)
T KOG0807|consen 249 VARCSERT 256 (295)
T ss_pred heecCCCC
Confidence 88765543
No 51
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=77.70 E-value=7.8 Score=36.71 Aligned_cols=72 Identities=19% Similarity=0.328 Sum_probs=42.1
Q ss_pred HHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
..+.++.+|+|||+.|=.|..... . ..+...++..|.+++++++..-.......+...+=.+.++
T Consensus 161 ~~r~~~~~gadli~~p~~~~~~~~----~-----------~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i~ 225 (265)
T cd07572 161 LARALARQGADILTVPAAFTMTTG----P-----------AHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMIV 225 (265)
T ss_pred HHHHHHHCCCCEEEECCCCCCCcc----h-----------HHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEEE
Confidence 445556789999999954432110 0 1234445677889999888653221111011233357788
Q ss_pred cCCCcEE
Q 041243 202 GNHGNII 208 (406)
Q Consensus 202 ~~~G~vl 208 (406)
+|+|+++
T Consensus 226 ~p~G~il 232 (265)
T cd07572 226 DPWGEVL 232 (265)
T ss_pred CCCcHHH
Confidence 9999865
No 52
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=77.24 E-value=16 Score=34.29 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=42.4
Q ss_pred HHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcC
Q 041243 124 DAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGN 203 (406)
Q Consensus 124 ~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~ 203 (406)
+..+.+|||||+.|=.+...+. ..+...++..|.+++++++..-..... .+..++=.+.+++|
T Consensus 152 ~~~~~~gadii~~p~~~~~~~~----------------~~~~~~~~~rA~en~~~vv~an~~G~~-~~~~~~G~S~i~~p 214 (254)
T cd07576 152 RALALAGADLVLVPTALMEPYG----------------FVARTLVPARAFENQIFVAYANRCGAE-DGLTYVGLSSIAGP 214 (254)
T ss_pred HHHHHCCCCEEEECCccCCCcc----------------hhhhhhhHHHHHhCCCEEEEEcccCCC-CCceeeeeeEEECC
Confidence 3344679999999865443221 123455677888999998864322111 12234455678899
Q ss_pred CCcEEE
Q 041243 204 HGNIIG 209 (406)
Q Consensus 204 ~G~vl~ 209 (406)
+|+++.
T Consensus 215 ~G~il~ 220 (254)
T cd07576 215 DGTVLA 220 (254)
T ss_pred CCCEeE
Confidence 999764
No 53
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=75.90 E-value=11 Score=37.17 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=45.6
Q ss_pred HHHhhC-CCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEc
Q 041243 124 DAAGVS-GVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIG 202 (406)
Q Consensus 124 ~~A~~~-gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~ 202 (406)
+..+.+ |+|+|+.|=.|..+... ..+...++..|.+++++|++.-.... ...+-.+.|++
T Consensus 190 r~la~~~GAdlil~paaw~~~~~~---------------~~w~~l~~arA~eN~~~vi~~N~~g~----~~~~G~S~iv~ 250 (299)
T cd07567 190 LELVKKLGVDDIVFPTAWFSELPF---------------LTAVQIQQAWAYANGVNLLAANYNNP----SAGMTGSGIYA 250 (299)
T ss_pred HHHHHhCCCCEEEECCccCCCCCc---------------hhHHHHHHHHHHHcCceEEEecCCCC----cCccccceEEc
Confidence 333456 99999999766432210 13456778899999999987533211 12346678889
Q ss_pred CC-CcEEEee
Q 041243 203 NH-GNIIGKH 211 (406)
Q Consensus 203 ~~-G~vl~~y 211 (406)
|+ |+++...
T Consensus 251 P~~G~v~a~~ 260 (299)
T cd07567 251 GRSGALVYHY 260 (299)
T ss_pred CCCCcEEEEe
Confidence 99 9988653
No 54
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=75.76 E-value=18 Score=36.46 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=46.2
Q ss_pred HHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
+.+..+.+|++||+-|-.|..+.. ..+...++..|.+++++++..-....+ .+-.++=.+.++
T Consensus 174 ~~R~la~~GAelii~psa~~~~~~----------------~~~~~~~rarA~eN~~yVv~aN~~G~~-~~~~~~G~S~Iv 236 (345)
T PRK13286 174 IWRDCAMKGAELIVRCQGYMYPAK----------------EQQVLVAKAMAWANNCYVAVANAAGFD-GVYSYFGHSAII 236 (345)
T ss_pred HHHHHHHcCCeEEEEccccCCCch----------------HHHHHHHHHHHHHCCCEEEEEeccccc-CCceeeeeEEEE
Confidence 445556789999998865433210 124556788889999998864322211 022455668899
Q ss_pred cCCCcEEEe
Q 041243 202 GNHGNIIGK 210 (406)
Q Consensus 202 ~~~G~vl~~ 210 (406)
+++|+++..
T Consensus 237 dp~G~vla~ 245 (345)
T PRK13286 237 GFDGRTLGE 245 (345)
T ss_pred CCCCcEEEe
Confidence 999998753
No 55
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=70.77 E-value=22 Score=34.21 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHHHHHHCCCcEEEEcCCCCCCC--C--------------cCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCC
Q 041243 258 NWLAFGLNGAEIVFNPSATVGEL--S--------------EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGK 321 (406)
Q Consensus 258 ~~~~~~~~Gadii~~Psa~~~~~--~--------------~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~ 321 (406)
+.+..+.+|||+|+.|-.+.... . ...+....+..|.+++++++. |... . +.+
T Consensus 35 ~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~----g~~~--~---~~~-- 103 (287)
T cd07568 35 MIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLIL----PIYE--K---EQG-- 103 (287)
T ss_pred HHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEE----EeEE--E---cCC--
Confidence 44556678999999998643211 0 011223345678899999885 2110 0 001
Q ss_pred CCCCCCcccceeeEEECCCCCee
Q 041243 322 PQHKDFGHFYGSSHFSAPDGSCT 344 (406)
Q Consensus 322 ~~~~~~~~~~G~S~Ii~P~G~i~ 344 (406)
+.+|-+.++++|+|+++
T Consensus 104 ------~~~yNs~~~i~~~G~i~ 120 (287)
T cd07568 104 ------GTLYNTAAVIDADGTYL 120 (287)
T ss_pred ------CcEEEEEEEECCCCcEe
Confidence 24667788899999864
No 56
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=70.48 E-value=34 Score=32.49 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=43.4
Q ss_pred HHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcC
Q 041243 124 DAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGN 203 (406)
Q Consensus 124 ~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~ 203 (406)
+..+.+|+|||+.|=.|..... +.. .....+...++..|.+++++++..-..... .+..++=.+.+++|
T Consensus 154 r~~~~~ga~li~~ps~~~~~~~--~~~--------~~~~~~~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p 222 (268)
T cd07580 154 RLLALQGADIVCVPTNWVPMPR--PPE--------GGPPMANILAMAAAHSNGLFIACADRVGTE-RGQPFIGQSLIVGP 222 (268)
T ss_pred HHHHHcCCCEEEEcCcccccCC--ccc--------ccCcHHHHhhHHHHhhCCcEEEEEeeeeec-cCceEeeeeEEECC
Confidence 3445689999999987653221 000 000123334566788999998763222211 12234456789999
Q ss_pred CCcEEE
Q 041243 204 HGNIIG 209 (406)
Q Consensus 204 ~G~vl~ 209 (406)
+|+++.
T Consensus 223 ~G~~~~ 228 (268)
T cd07580 223 DGWPLA 228 (268)
T ss_pred CCCeee
Confidence 999763
No 57
>PLN02798 nitrilase
Probab=70.22 E-value=20 Score=34.69 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=43.5
Q ss_pred HHHHh-hCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 123 IDAAG-VSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 123 i~~A~-~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
.+.++ .+|+|||+.|=.|..... . ..+...++.-|.+++++++..-.......+...+=.+.++
T Consensus 172 ~r~~a~~~Gadlil~ps~~~~~~~----~-----------~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii 236 (286)
T PLN02798 172 YQQLRFEHGAQVLLVPSAFTKPTG----E-----------AHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALII 236 (286)
T ss_pred HHHHHHhCCCcEEEECCcCCCCCc----H-----------HHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEEE
Confidence 34444 789999999975432210 0 1234456777888999888632221111123445567888
Q ss_pred cCCCcEEE
Q 041243 202 GNHGNIIG 209 (406)
Q Consensus 202 ~~~G~vl~ 209 (406)
+|+|+++.
T Consensus 237 ~p~G~il~ 244 (286)
T PLN02798 237 DPWGTVVA 244 (286)
T ss_pred CCCccchh
Confidence 99999764
No 58
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=69.98 E-value=24 Score=33.54 Aligned_cols=74 Identities=9% Similarity=0.186 Sum_probs=45.0
Q ss_pred HhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCC
Q 041243 126 AGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHG 205 (406)
Q Consensus 126 A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G 205 (406)
.+.+|+|||+.|=.+..... ... . .....+...++..|.+++++++..-..-.. .+..++-.+.+++|+|
T Consensus 155 ~~~~ga~lil~ps~~~~~~~--~~~-----~--~~~~~~~~~~~~rA~e~~~~vv~an~~G~~-~~~~~~G~S~ii~p~G 224 (269)
T cd07586 155 LALDGADVIFIPANSPARGV--GGD-----F--DNEENWETLLKFYAMMNGVYVVFANRVGVE-DGVYFWGGSRVVDPDG 224 (269)
T ss_pred HHHCCCCEEEEeCCCccccC--ccc-----c--chhHHHHHHHHHHHHHhCCeEEEEeeecCc-CCceEeCCcEEECCCC
Confidence 35689999999976532110 000 0 001235567788899999988864332221 1334556678899999
Q ss_pred cEEE
Q 041243 206 NIIG 209 (406)
Q Consensus 206 ~vl~ 209 (406)
+++.
T Consensus 225 ~il~ 228 (269)
T cd07586 225 EVVA 228 (269)
T ss_pred CEEE
Confidence 9875
No 59
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=69.55 E-value=23 Score=33.25 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=43.3
Q ss_pred HHHHHHHHCCCcEEEEcCCCCCCCCc-------------CcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCC
Q 041243 257 LNWLAFGLNGAEIVFNPSATVGELSE-------------PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQ 323 (406)
Q Consensus 257 e~~~~~~~~Gadii~~Psa~~~~~~~-------------~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~ 323 (406)
...+..+.+|+|+|+.|-.+...... ..|....+..|.+++++++.--. -.. ++
T Consensus 21 ~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~--------~~---- 87 (255)
T cd07581 21 RLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMF-EPA--------GD---- 87 (255)
T ss_pred HHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEee-eeC--------CC----
Confidence 34566778999999999875322111 12334445567788988875321 110 11
Q ss_pred CCCCcccceeeEEECCCCCee
Q 041243 324 HKDFGHFYGSSHFSAPDGSCT 344 (406)
Q Consensus 324 ~~~~~~~~G~S~Ii~P~G~i~ 344 (406)
+.+|=+.++++|+|.++
T Consensus 88 ----~~~yNs~~~i~~~G~i~ 104 (255)
T cd07581 88 ----GRVYNTLVVVGPDGEII 104 (255)
T ss_pred ----CcEEEeEEEECCCCcEE
Confidence 14566788899999854
No 60
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=68.54 E-value=22 Score=33.39 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=42.4
Q ss_pred HHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
+.+..+.+|+|+|+.|=.|... .. ..+...++..|.+++++++..-..... .+..++=.+.++
T Consensus 151 ~~r~~~~~ga~ll~~ps~~~~~-----~~-----------~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii 213 (253)
T cd07583 151 LFRKLALEGAEILFVPAEWPAA-----RI-----------EHWRTLLRARAIENQAFVVACNRVGTD-GGNEFGGHSMVI 213 (253)
T ss_pred HHHHHHHcCCcEEEECCCCCCC-----ch-----------HHHHHHHHHHHHHhCCEEEEEcCcccC-CCceecceeEEE
Confidence 4455567899999999654321 01 123344567788899988753211111 123345556788
Q ss_pred cCCCcEEE
Q 041243 202 GNHGNIIG 209 (406)
Q Consensus 202 ~~~G~vl~ 209 (406)
+|+|+++.
T Consensus 214 ~p~G~il~ 221 (253)
T cd07583 214 DPWGEVLA 221 (253)
T ss_pred CCCchhhe
Confidence 99999764
No 61
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=67.91 E-value=29 Score=32.76 Aligned_cols=68 Identities=10% Similarity=0.184 Sum_probs=40.8
Q ss_pred HHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeecc---CCCCeeEEEEEE
Q 041243 124 DAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDV---NHGDTIWNTAII 200 (406)
Q Consensus 124 ~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~---~~~~~~~Nsavv 200 (406)
+..+.+|+|||+.|=.|..++ | ...++.-|.+++++++..-..... ..+....-.+.+
T Consensus 151 r~~~~~Gadli~~ps~~~~~~--------~-----------~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~i 211 (259)
T cd07577 151 RTLALKGADIIAHPANLVLPY--------C-----------PKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQI 211 (259)
T ss_pred HHHHHcCCCEEEECCccCCch--------h-----------hhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeEE
Confidence 444568999999997654221 1 223466778899988853211110 001233456788
Q ss_pred EcCCCcEEEe
Q 041243 201 IGNHGNIIGK 210 (406)
Q Consensus 201 i~~~G~vl~~ 210 (406)
++|+|+++..
T Consensus 212 ~~p~G~i~~~ 221 (259)
T cd07577 212 TSPKGEVLAR 221 (259)
T ss_pred ECCCCCEEee
Confidence 9999997643
No 62
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=67.54 E-value=35 Score=32.15 Aligned_cols=71 Identities=10% Similarity=0.136 Sum_probs=41.7
Q ss_pred HHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
+.+.+..+|+|+|+.|=.|.... . ..+....+.-|.+++++++..-..-.. .+...+=.+.++
T Consensus 154 ~~r~~~~~gadll~~ps~~~~~~-----~-----------~~~~~~~~~rA~En~~~vv~~n~~g~~-~~~~~~G~S~ii 216 (258)
T cd07584 154 VARILTLKGAEVIFCPSAWREQD-----A-----------DIWDINLPARALENTVFVAAVNRVGNE-GDLVLFGKSKIL 216 (258)
T ss_pred HHHHHHHCCCcEEEECCccCCCC-----c-----------hHHHHHHHHHHHhCCcEEEEECccccC-CCceecceeEEE
Confidence 34555678999999996543211 0 123334567788999999852211111 022233467789
Q ss_pred cCCCcEEE
Q 041243 202 GNHGNIIG 209 (406)
Q Consensus 202 ~~~G~vl~ 209 (406)
+++|+++.
T Consensus 217 ~p~G~il~ 224 (258)
T cd07584 217 NPRGQVLA 224 (258)
T ss_pred CCCCceee
Confidence 99999764
No 63
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=66.93 E-value=19 Score=31.90 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHHHHHCCCcEEEEcCCCCCCCCc-------------------CcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCC
Q 041243 259 WLAFGLNGAEIVFNPSATVGELSE-------------------PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGD 319 (406)
Q Consensus 259 ~~~~~~~Gadii~~Psa~~~~~~~-------------------~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~ 319 (406)
.+....+|+|+|+.|-.+...... ..+....+..|.+++++++.--. -.+ +
T Consensus 27 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~-~~~---------~ 96 (186)
T PF00795_consen 27 IEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIP-ERD---------D 96 (186)
T ss_dssp HHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEE-EEE---------T
T ss_pred HHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccc-ccc---------c
Confidence 345567899999999986653310 12233445577889998875521 111 1
Q ss_pred CCCCCCCCcccceeeEEECCCCCee
Q 041243 320 GKPQHKDFGHFYGSSHFSAPDGSCT 344 (406)
Q Consensus 320 G~~~~~~~~~~~G~S~Ii~P~G~i~ 344 (406)
..++-+.++++|+|.++
T Consensus 97 --------~~~~N~~~~~~~~g~~~ 113 (186)
T PF00795_consen 97 --------GGLYNSAVVIDPDGEIL 113 (186)
T ss_dssp --------TEEEEEEEEEETTSEEE
T ss_pred --------ccccceeEEEEeeeccc
Confidence 24677788999999876
No 64
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=65.85 E-value=48 Score=31.74 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
..++..++.+++.++.|+.-|++.|+++.... ++.. .....|..+. +.++.+.++|+++|+.+..
T Consensus 87 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~-~~~~~~~~~~-----~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 87 AVRQQGLEIMEKAIQLARDLGIRTIQLAGYDV-YYEE-HDEETRRRFR-----EGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEecCccc-ccCc-CCHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 56778899999999999999999999874211 1111 1122233332 4678888999999998765
No 65
>PLN02747 N-carbamolyputrescine amidase
Probab=65.56 E-value=31 Score=33.44 Aligned_cols=70 Identities=14% Similarity=0.004 Sum_probs=40.4
Q ss_pred HHHHHHHHCCCcEEEEcCCCCCCCC-----c-----------CcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCC
Q 041243 257 LNWLAFGLNGAEIVFNPSATVGELS-----E-----------PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDG 320 (406)
Q Consensus 257 e~~~~~~~~Gadii~~Psa~~~~~~-----~-----------~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G 320 (406)
.+.+..+.+|||||+.|-.+..... . ..+.......|.+++++++..- ...+ +|
T Consensus 29 ~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~-~~~~---------~~ 98 (296)
T PLN02747 29 RLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSF-FEEA---------NN 98 (296)
T ss_pred HHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeee-eecC---------CC
Confidence 3456667899999999987432211 0 0122234456778888886421 1110 12
Q ss_pred CCCCCCCcccceeeEEECCCCCee
Q 041243 321 KPQHKDFGHFYGSSHFSAPDGSCT 344 (406)
Q Consensus 321 ~~~~~~~~~~~G~S~Ii~P~G~i~ 344 (406)
.+|-+..+++|+|+++
T Consensus 99 --------~~yNs~~~i~~~G~i~ 114 (296)
T PLN02747 99 --------AHYNSIAIIDADGTDL 114 (296)
T ss_pred --------ceEEEEEEECCCCCCc
Confidence 3556677888888764
No 66
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=65.20 E-value=41 Score=31.74 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=42.6
Q ss_pred HHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEc
Q 041243 123 IDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIG 202 (406)
Q Consensus 123 i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~ 202 (406)
.+..+.+|+|||+.|=++...... ... ..+...++..|.+++++++..-...... +..+.=.+.+++
T Consensus 149 ~r~l~~~gadlil~p~~~~~~~~~-~~~-----------~~~~~~~~~rA~e~~~~vv~~n~~g~~~-~~~~~G~S~i~~ 215 (261)
T cd07585 149 VRATALLGAEILFAPHATPGTTSP-KGR-----------EWWMRWLPARAYDNGVFVAACNGVGRDG-GEVFPGGAMILD 215 (261)
T ss_pred HHHHHHCCCCEEEECCccCCCCCc-chH-----------HHHHHHhHHHHhhcCeEEEEecccccCC-CceecceEEEEC
Confidence 344457899999999654321100 000 1234456777888999988632211110 222344567889
Q ss_pred CCCcEEEe
Q 041243 203 NHGNIIGK 210 (406)
Q Consensus 203 ~~G~vl~~ 210 (406)
|+|+++..
T Consensus 216 p~G~v~~~ 223 (261)
T cd07585 216 PYGRVLAE 223 (261)
T ss_pred CCCCEEec
Confidence 99997753
No 67
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=64.99 E-value=35 Score=32.60 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=47.2
Q ss_pred hhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCc
Q 041243 127 GVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGN 206 (406)
Q Consensus 127 ~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~ 206 (406)
+..|+++|+.|-.|..... ...+...++.-|-++++.++..-...........+-.++|++|+|+
T Consensus 163 a~~Gaeii~~p~a~~~~~~---------------~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~ 227 (274)
T COG0388 163 ALGGAELLLVPAAWPAERG---------------LDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDGE 227 (274)
T ss_pred HhcCCeEEEEcCCCCCccc---------------HHHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCcc
Confidence 3459999999999876442 1235556888889999999875332221101467888999999998
Q ss_pred EEE
Q 041243 207 IIG 209 (406)
Q Consensus 207 vl~ 209 (406)
+++
T Consensus 228 v~~ 230 (274)
T COG0388 228 VLA 230 (274)
T ss_pred EEe
Confidence 654
No 68
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=64.35 E-value=45 Score=32.34 Aligned_cols=73 Identities=10% Similarity=0.062 Sum_probs=43.4
Q ss_pred HHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCC---CCeeEEEEE
Q 041243 123 IDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNH---GDTIWNTAI 199 (406)
Q Consensus 123 i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~---~~~~~Nsav 199 (406)
.+..+.+|+|||+.|=.|..+.. . ..+...++.-|.+++++++..-....... +..+.-.+.
T Consensus 182 ~r~la~~Gadlil~psa~~~~~~----~-----------~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S~ 246 (294)
T cd07582 182 ARGLAMNGAEVLLRSSSEVPSVE----L-----------DPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGGSM 246 (294)
T ss_pred HHHHHHCCCcEEEEcCCCCCCcc----h-----------hhHHHHHHHHHHhcCCEEEEecccccCcccccCceecceeE
Confidence 44455789999999987653221 0 12344567788889998885322111100 112334567
Q ss_pred EEcCCCcEEEe
Q 041243 200 IIGNHGNIIGK 210 (406)
Q Consensus 200 vi~~~G~vl~~ 210 (406)
+++|+|+++..
T Consensus 247 ivdp~G~vla~ 257 (294)
T cd07582 247 IVDYKGRVLAE 257 (294)
T ss_pred EECCCCCEEEe
Confidence 78999998753
No 69
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=64.21 E-value=39 Score=32.88 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCcEEEEcCCCCCCCCc-----------CcH--------------HHHHHHHHHHcCcEEEEECCCCCCCC
Q 041243 257 LNWLAFGLNGAEIVFNPSATVGELSE-----------PMW--------------PIEARNAAIANSYFVGSINRVGTEVF 311 (406)
Q Consensus 257 e~~~~~~~~Gadii~~Psa~~~~~~~-----------~~w--------------~~~~r~rAien~~~vv~aN~~G~~~~ 311 (406)
.+.+.++.+|+++|+.|-.+...... +.| ....+..|.+++++++.... -.+
T Consensus 24 ~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~-- 100 (297)
T cd07564 24 RLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVS-ERD-- 100 (297)
T ss_pred HHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeE-ecc--
Confidence 34566678999999999875322111 111 12234456788998875431 110
Q ss_pred CCCCCCCCCCCCCCCCcccceeeEEECCCCCeec
Q 041243 312 PNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTP 345 (406)
Q Consensus 312 ~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~ 345 (406)
+ ..+|-++++++|+|+++.
T Consensus 101 -------~--------~~~yNs~~vi~~~G~i~~ 119 (297)
T cd07564 101 -------G--------GTLYNTQLLIDPDGELLG 119 (297)
T ss_pred -------C--------CceEEEEEEEcCCCCEee
Confidence 1 235667888999998653
No 70
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=64.05 E-value=47 Score=31.61 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=44.9
Q ss_pred HHHhhCCCeEEEecCCCCCC-CCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeecc---CCCCeeEEEEE
Q 041243 124 DAAGVSGVNILCLQEAWTMP-FAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDV---NHGDTIWNTAI 199 (406)
Q Consensus 124 ~~A~~~gvdLVvfPE~~l~g-~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~---~~~~~~~Nsav 199 (406)
+..+.+|+|||+.|=.|... +.... .....+...++..|.+++++++..-..... ..+..++=.+.
T Consensus 160 r~~a~~ga~lil~ps~~~~~~~~~~~----------~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~ 229 (279)
T TIGR03381 160 RAMALMGAEVLFYPTAIGSEPHDPDL----------DSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSF 229 (279)
T ss_pred HHHHHcCCCEEEecCccCCCCccccc----------ccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEE
Confidence 44456899999999765421 11000 001234556667788999988853221111 01234566788
Q ss_pred EEcCCCcEEE
Q 041243 200 IIGNHGNIIG 209 (406)
Q Consensus 200 vi~~~G~vl~ 209 (406)
+++|+|+++.
T Consensus 230 i~~p~G~il~ 239 (279)
T TIGR03381 230 IADHTGELVA 239 (279)
T ss_pred EECCCCcEee
Confidence 9999999875
No 71
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=63.96 E-value=29 Score=32.99 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=41.8
Q ss_pred CCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEE
Q 041243 129 SGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNII 208 (406)
Q Consensus 129 ~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl 208 (406)
.|+|+|+.|=.|.... . ..+...++.-|.+++++++..-.......+..++=.+.+++|+|+++
T Consensus 154 ~gad~i~~~s~~~~~~-----~-----------~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~vl 217 (256)
T PRK10438 154 NDYDLALYVANWPAPR-----S-----------LHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEII 217 (256)
T ss_pred cCCCEEEEecCCCCCc-----h-----------HHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcEE
Confidence 5789999987754211 0 13445667789999999886432221110223455688999999987
Q ss_pred Ee
Q 041243 209 GK 210 (406)
Q Consensus 209 ~~ 210 (406)
..
T Consensus 218 ~~ 219 (256)
T PRK10438 218 AT 219 (256)
T ss_pred EE
Confidence 54
No 72
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=63.14 E-value=38 Score=31.44 Aligned_cols=68 Identities=13% Similarity=0.261 Sum_probs=44.7
Q ss_pred HHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCC
Q 041243 125 AAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNH 204 (406)
Q Consensus 125 ~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~ 204 (406)
.+..+|+|+|+.|=.+.... ...+...++..|.+++++++........ .+...+-.+.+++|+
T Consensus 154 ~~~~~g~dli~~ps~~~~~~----------------~~~~~~~~~~~A~e~~~~vv~~n~~G~~-~~~~~~G~S~i~~p~ 216 (253)
T cd07197 154 ELALKGADIILVPAAWPTAR----------------REHWELLLRARAIENGVYVVAANRVGEE-GGLEFAGGSMIVDPD 216 (253)
T ss_pred HHHHCCCcEEEECCcCCCcc----------------hHHHHHHHHHHHHHhCCeEEEecCCCCC-CCccccceeEEECCC
Confidence 34567999999998754321 1235567788899999988864322111 123455667888999
Q ss_pred CcEEE
Q 041243 205 GNIIG 209 (406)
Q Consensus 205 G~vl~ 209 (406)
|.++.
T Consensus 217 G~~~~ 221 (253)
T cd07197 217 GEVLA 221 (253)
T ss_pred Cceee
Confidence 98764
No 73
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=62.01 E-value=29 Score=32.74 Aligned_cols=70 Identities=9% Similarity=0.128 Sum_probs=42.6
Q ss_pred HhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCC
Q 041243 126 AGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHG 205 (406)
Q Consensus 126 A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G 205 (406)
.+..|+|||+.|=.+..... . ...+...++..|.+++++++..-..... .+..+.=.+.+++|+|
T Consensus 158 ~~~~ga~ll~~ps~~~~~~~-----~---------~~~~~~~~~~rA~en~~~vv~~n~~g~~-~~~~~~G~S~ii~p~G 222 (261)
T cd07570 158 LALAGADLILNLSASPFHLG-----K---------QDYRRELVSSRSARTGLPYVYVNQVGGQ-DDLVFDGGSFIADNDG 222 (261)
T ss_pred HHHcCCcEEEEeCCCccccC-----c---------HHHHHHHHHHHHHHhCCcEEEEeCCCCC-ceEEEECceEEEcCCC
Confidence 34679999999966432110 0 0123456788899999998864322111 0123344578899999
Q ss_pred cEEEe
Q 041243 206 NIIGK 210 (406)
Q Consensus 206 ~vl~~ 210 (406)
+++..
T Consensus 223 ~vl~~ 227 (261)
T cd07570 223 ELLAE 227 (261)
T ss_pred CEEEe
Confidence 98753
No 74
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=60.64 E-value=67 Score=30.91 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=62.3
Q ss_pred cCCceEeeeeecccccccCCCC---ccEEEEEecccCCCCcccchhhHHHH----HHHHHHHHHHHhhCCCeEEEecCCC
Q 041243 68 EHDFDLQGFCFRADKEFLREPR---VVRVGLIQNSIVLPTTLHFLDQKKAI----FQKLKLLIDAAGVSGVNILCLQEAW 140 (406)
Q Consensus 68 ~~~~~~~~~~~~~~~e~~~~~~---~vrValiQ~~i~~~~~~p~~~~~~~n----~~~i~~~i~~A~~~gvdLVvfPE~~ 140 (406)
+...-+.|+.+.......++|+ ..||++++..+..+.++....+.+.. .+.+.++++.-...|+|+|+..- .
T Consensus 61 ~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k-~ 139 (261)
T cd03334 61 SDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEK-S 139 (261)
T ss_pred HHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECC-c
Confidence 4466788999875544433444 45899999998876543333444444 45556666666778999987643 2
Q ss_pred CCCCCCCcchhHHhhhcC--CCCcHHHHHHHHHHHhcCcEEEee
Q 041243 141 TMPFAFCTREKRWCEFAE--PVDGESTQFLQELARKYNMVIISP 182 (406)
Q Consensus 141 l~g~~~~~~~~~~~~~ae--~~~~~~~~~l~~lAkk~~i~Iv~G 182 (406)
...++ ..+..-+. .+...-...|.++|+-.|..++..
T Consensus 140 I~~~a-----~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~~ 178 (261)
T cd03334 140 VSRIA-----QDLLLEAGITLVLNVKPSVLERISRCTGADIISS 178 (261)
T ss_pred cCHHH-----HHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecC
Confidence 32221 01111000 001122456777777777777766
No 75
>PLN02504 nitrilase
Probab=57.89 E-value=58 Score=32.72 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=14.6
Q ss_pred HHHHHHCCCcEEEEcCCCC
Q 041243 259 WLAFGLNGAEIVFNPSATV 277 (406)
Q Consensus 259 ~~~~~~~Gadii~~Psa~~ 277 (406)
....+.+|||||+.|-.+.
T Consensus 50 i~eAa~~gadLIVfPE~~l 68 (346)
T PLN02504 50 IAEAAAYGSQLVVFPEAFI 68 (346)
T ss_pred HHHHHHCCCeEEEeCcccc
Confidence 4445678999999998753
No 76
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=57.14 E-value=41 Score=34.09 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=41.5
Q ss_pred HHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeecc--------C-------
Q 041243 125 AAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDV--------N------- 189 (406)
Q Consensus 125 ~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~--------~------- 189 (406)
..+.+|+|||+.|=.|.... .. ..+...++..|-++++++++.-..... .
T Consensus 236 ~la~~GAdiil~Psa~~~~~----~~-----------~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~ 300 (363)
T cd07587 236 MYGLNGAEIVFNPSATVGAL----SE-----------PMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHK 300 (363)
T ss_pred HHHHcCCcEEEECCCcCCCC----ch-----------HHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccc
Confidence 34567999999996653211 01 124456777889999998853211100 0
Q ss_pred CCCeeEEEEEEEcCCCcEE
Q 041243 190 HGDTIWNTAIIIGNHGNII 208 (406)
Q Consensus 190 ~~~~~~Nsavvi~~~G~vl 208 (406)
....++-.+.|++|+|+++
T Consensus 301 ~~~~f~G~S~Ii~P~G~il 319 (363)
T cd07587 301 DFGHFYGSSYVAAPDGSRT 319 (363)
T ss_pred ccccccceeEEECCCCCCc
Confidence 0124566788999999864
No 77
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=56.35 E-value=1.2e+02 Score=29.04 Aligned_cols=64 Identities=17% Similarity=0.218 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
+.++..++.+.+.++.|+.-|++.|++.-....+ ...+..|..+. ..++.+.+.|++++|.+.+
T Consensus 78 ~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~-----~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 78 EKREKSIERLKDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRVI-----EALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHH-----HHHHHHHHhccCCCCEEEE
Confidence 4688889999999999999999998873322111 11122232222 3566777777888887654
No 78
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=56.27 E-value=49 Score=31.45 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
..+++.++.+.+.++.|+.-|++.|++.-.. .++. .+.+..|..+. ..++.+.+.|+++||.+.+
T Consensus 83 ~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~-~~~~~~~~~~~-----~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 83 HMRRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYL-TPPNVIWGRLA-----ENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCC-CCHHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 4678889999999999999999998885432 2332 12222343333 4788899999999987754
No 79
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=56.20 E-value=61 Score=30.96 Aligned_cols=71 Identities=18% Similarity=0.084 Sum_probs=41.3
Q ss_pred HHHHHHHHCCCcEEEEcCCCCCCC--Cc--------------CcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCC
Q 041243 257 LNWLAFGLNGAEIVFNPSATVGEL--SE--------------PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDG 320 (406)
Q Consensus 257 e~~~~~~~~Gadii~~Psa~~~~~--~~--------------~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G 320 (406)
+..+.++.+|+|+|+.|-.+.... .. ..+....+..|.+++++++... .-.+ .+
T Consensus 23 ~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~g~-~~~~--------~~- 92 (284)
T cd07573 23 ELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPVSL-FEKR--------GN- 92 (284)
T ss_pred HHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEecc-eeeC--------CC-
Confidence 345667789999999998643221 00 1122234456778888876522 1110 01
Q ss_pred CCCCCCCcccceeeEEECCCCCee
Q 041243 321 KPQHKDFGHFYGSSHFSAPDGSCT 344 (406)
Q Consensus 321 ~~~~~~~~~~~G~S~Ii~P~G~i~ 344 (406)
+.+|-+.++++|+|.++
T Consensus 93 -------~~~yNs~~v~~~~G~i~ 109 (284)
T cd07573 93 -------GLYYNSAVVIDADGSLL 109 (284)
T ss_pred -------CcEEEEEEEECCCCCEE
Confidence 24566778888999864
No 80
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=54.19 E-value=42 Score=30.06 Aligned_cols=67 Identities=18% Similarity=0.076 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeecee
Q 041243 118 KLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILE 185 (406)
Q Consensus 118 ~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e 185 (406)
+-.+.++..++.|.|-||++-....+..+....- ..........+.++.+.++|.++||.|.+|+..
T Consensus 21 ~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~-~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKL-SPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEEEeecCCcccCCccc-cCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 3444455556779999999977666554332110 011111122578999999999999999999754
No 81
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=52.64 E-value=1e+02 Score=29.42 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
..++..++.+++.++.|+.-|+..|+++-. ..++.. ..+..|..+. +.++.+.+.|+++|+.|..
T Consensus 92 ~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~-~~~~~~-~~~~~~~~~~-----~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 92 AVRAQALEIMRKAIQLAQDLGIRVIQLAGY-DVYYEQ-ANNETRRRFI-----DGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCc-cccccc-cHHHHHHHHH-----HHHHHHHHHHHHhCCEEEE
Confidence 457788999999999999999999998521 111110 1111122222 3567888899999987754
No 82
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=52.62 E-value=67 Score=30.30 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEc
Q 041243 123 IDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIG 202 (406)
Q Consensus 123 i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~ 202 (406)
.+....+|+++|+.|=.|..+.. +. ..+..-|.+++++++..-..... .+...+=.+.+++
T Consensus 155 ~r~~~~~ga~ll~~ps~~~~~~~-----------------~~-~~~~~rA~en~~~vv~an~~G~~-~~~~~~G~S~ii~ 215 (258)
T cd07578 155 ARLLALGGADVICHISNWLAERT-----------------PA-PYWINRAFENGCYLIESNRWGLE-RGVQFSGGSCIIE 215 (258)
T ss_pred HHHHHHcCCCEEEEcCCCCCCCC-----------------cc-hHHHHhhhcCCeEEEEecceecc-CCcceeeEEEEEC
Confidence 34445689999999976543211 00 11235677888888864322111 1234456678999
Q ss_pred CCCcEEE
Q 041243 203 NHGNIIG 209 (406)
Q Consensus 203 ~~G~vl~ 209 (406)
|+|+++.
T Consensus 216 p~G~il~ 222 (258)
T cd07578 216 PDGTIQA 222 (258)
T ss_pred CCCcEee
Confidence 9999764
No 83
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.96 E-value=68 Score=30.52 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
..++..++.+++.++.|+.-|++.|+++-. ...+... .+..|..+. ..++.+.++|+++||.+..
T Consensus 87 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~-~~~~~~~-~~~~~~~~~-----~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 87 ATRERALEIMKKAIRLAQDLGIRTIQLAGY-DVYYEEK-SEETRQRFI-----EGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEECCc-ccccccc-cHHHHHHHH-----HHHHHHHHHHHHhCCEEEE
Confidence 557788999999999999999999998621 1111111 111122222 4567788889999987763
No 84
>PRK13287 amiF formamidase; Provisional
Probab=51.09 E-value=97 Score=30.93 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=40.6
Q ss_pred HHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
+.+..+.+|++||+-|=.|..+. ...+.-..+.-|-+++++++..-....+. .-.++=.+.++
T Consensus 173 ~~R~~a~~GAeill~~s~~~~~~----------------~~~w~~~~~arA~en~~~vv~an~~G~~~-~~~~~G~S~Ii 235 (333)
T PRK13287 173 MAREAAYKGANVMIRISGYSTQV----------------REQWILTNRSNAWQNLMYTASVNLAGYDG-VFYYFGEGQVC 235 (333)
T ss_pred HHHHHHHCCCeEEEECCccCCcc----------------hhHHHHHHHHHHHhCCcEEEEEeccccCC-CeeeeeeeEEE
Confidence 34445567899999875433211 01233334556777888877642222210 11344567889
Q ss_pred cCCCcEEEe
Q 041243 202 GNHGNIIGK 210 (406)
Q Consensus 202 ~~~G~vl~~ 210 (406)
+|+|+++..
T Consensus 236 dp~G~vl~~ 244 (333)
T PRK13287 236 NFDGTTLVQ 244 (333)
T ss_pred CCCCcEEEe
Confidence 999998753
No 85
>PRK13981 NAD synthetase; Provisional
Probab=50.10 E-value=70 Score=34.09 Aligned_cols=74 Identities=9% Similarity=0.144 Sum_probs=45.0
Q ss_pred HHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
..+..+.+|+|||+.|=.| +|.... .......++..|.+++++++..-..... .+..+.-.+.++
T Consensus 153 ~~r~la~~Gadlil~psa~--~~~~~~------------~~~~~~~~~~rA~En~~~vv~aN~vG~~-~~~~f~G~S~i~ 217 (540)
T PRK13981 153 PAETLAEAGAELLLVPNAS--PYHRGK------------PDLREAVLRARVRETGLPLVYLNQVGGQ-DELVFDGASFVL 217 (540)
T ss_pred HHHHHHHCCCcEEEEcCCC--cccCCc------------HHHHHHHHHHHHHHhCCeEEEEecccCC-CceEEeCceEEE
Confidence 3344457899999999443 332110 0123457888999999988864322111 122444567888
Q ss_pred cCCCcEEEe
Q 041243 202 GNHGNIIGK 210 (406)
Q Consensus 202 ~~~G~vl~~ 210 (406)
+++|+++..
T Consensus 218 dp~G~il~~ 226 (540)
T PRK13981 218 NADGELAAR 226 (540)
T ss_pred CCCCCEeee
Confidence 999987643
No 86
>PLN00202 beta-ureidopropionase
Probab=49.83 E-value=72 Score=32.90 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=41.9
Q ss_pred HhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccC--------CC------
Q 041243 126 AGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVN--------HG------ 191 (406)
Q Consensus 126 A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~--------~~------ 191 (406)
.+.+|+|||+.|=.|.... .. ..|...++..|.+++++|++.-...... .+
T Consensus 258 la~~GAdiIl~Psa~~~~~----~~-----------~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~ 322 (405)
T PLN00202 258 FGLNGAEIVFNPSATVGDL----SE-----------PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKD 322 (405)
T ss_pred HHHCCCcEEEECCCCCCcc----CH-----------HHHHHHHHHHHHhcCCEEEEeccccccccccccccccccccccc
Confidence 3467999999996653211 01 1244667788889999888632111100 01
Q ss_pred -CeeEEEEEEEcCCCcEEE
Q 041243 192 -DTIWNTAIIIGNHGNIIG 209 (406)
Q Consensus 192 -~~~~Nsavvi~~~G~vl~ 209 (406)
..++=.+.|++|+|+++.
T Consensus 323 ~~~f~G~S~Iv~P~G~vla 341 (405)
T PLN00202 323 FGHFYGSSHFSAPDASCTP 341 (405)
T ss_pred cccccceeEEEcCCCCEec
Confidence 235667888899998753
No 87
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=49.03 E-value=35 Score=34.12 Aligned_cols=73 Identities=26% Similarity=0.214 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHhhCCCeEEEecCCCC----CCCCCCcchh--------HHhhhcCCC--CcHHHHHHHHHHHhcC
Q 041243 111 QKKAIFQKLKLLIDAAGVSGVNILCLQEAWT----MPFAFCTREK--------RWCEFAEPV--DGESTQFLQELARKYN 176 (406)
Q Consensus 111 ~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l----~g~~~~~~~~--------~~~~~ae~~--~~~~~~~l~~lAkk~~ 176 (406)
+....+++..++|++|+++|||+|=|+=... +.-....+.+ ...++.+.+ +-++...|.+.|++.|
T Consensus 24 NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~G 103 (347)
T COG2089 24 NHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKRG 103 (347)
T ss_pred cccCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 4556788999999999999999998887322 1110000000 112222222 3578999999999999
Q ss_pred cEEEeec
Q 041243 177 MVIISPI 183 (406)
Q Consensus 177 i~Iv~G~ 183 (406)
|.++++-
T Consensus 104 i~~~SSP 110 (347)
T COG2089 104 IIFFSSP 110 (347)
T ss_pred eEEEecC
Confidence 9887653
No 88
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=47.60 E-value=95 Score=30.17 Aligned_cols=73 Identities=12% Similarity=-0.031 Sum_probs=40.4
Q ss_pred HHHHHHHCCCcEEEEcCCCCCCCC----------cCc---------HHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCC
Q 041243 258 NWLAFGLNGAEIVFNPSATVGELS----------EPM---------WPIEARNAAIANSYFVGSINRVGTEVFPNPFTSG 318 (406)
Q Consensus 258 ~~~~~~~~Gadii~~Psa~~~~~~----------~~~---------w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~ 318 (406)
..+..+.+|||||+.|-.+..... ... ........|.+++++++.--. -.. .
T Consensus 30 ~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~--------~ 100 (302)
T cd07569 30 LLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFDRAKELGIGFYLGYA-ELT--------E 100 (302)
T ss_pred HHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHHHHHHHhCeEEEEece-eec--------C
Confidence 455566799999999986532210 001 112233457788998875321 110 0
Q ss_pred CCCCCCCCCcccceeeEEECCCCCee
Q 041243 319 DGKPQHKDFGHFYGSSHFSAPDGSCT 344 (406)
Q Consensus 319 ~G~~~~~~~~~~~G~S~Ii~P~G~i~ 344 (406)
++. ...+|=+.++++|+|+++
T Consensus 101 ~~~-----~~~~yNsa~~i~~~G~i~ 121 (302)
T cd07569 101 DGG-----VKRRFNTSILVDKSGKIV 121 (302)
T ss_pred CCC-----cceeeeEEEEECCCCCEe
Confidence 110 013566678899999864
No 89
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=47.59 E-value=91 Score=30.54 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=37.2
Q ss_pred CCCcEEEEcCCCCCCCCcC---------------cHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcc
Q 041243 265 NGAEIVFNPSATVGELSEP---------------MWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGH 329 (406)
Q Consensus 265 ~Gadii~~Psa~~~~~~~~---------------~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~ 329 (406)
+|+|||+.|-.+....... ......+..|.+++++++.-. .-.. .++ ...
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~-~e~~--------~~~------~~~ 99 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGY-PEKV--------DES------SPK 99 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEee-eEec--------CCC------CCc
Confidence 7999999998754221110 011223445778899887432 1110 010 014
Q ss_pred cceeeEEECCCCCee
Q 041243 330 FYGSSHFSAPDGSCT 344 (406)
Q Consensus 330 ~~G~S~Ii~P~G~i~ 344 (406)
+|-++.+++|+|+++
T Consensus 100 ~yNta~vi~~~G~ii 114 (295)
T cd07566 100 LYNSALVVDPEGEVV 114 (295)
T ss_pred eEEEEEEEcCCCeEE
Confidence 677789999999865
No 90
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=45.43 E-value=1.1e+02 Score=28.62 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=37.6
Q ss_pred HHHHHHCCCcEEEEcCCCCCCCCc----------CcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCc
Q 041243 259 WLAFGLNGAEIVFNPSATVGELSE----------PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFG 328 (406)
Q Consensus 259 ~~~~~~~Gadii~~Psa~~~~~~~----------~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~ 328 (406)
.+.... |||+|+.|-.+...... .......+..|.++++.++..- .-.+ + .
T Consensus 26 i~~a~~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~~~~i~i~~~~-~~~~---------~--------~ 86 (252)
T cd07575 26 IEQLKE-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAKKKGAAITGSL-IIKE---------G--------G 86 (252)
T ss_pred HHHhhc-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHHHCCeEEEEEE-EEcc---------C--------C
Confidence 344444 99999999875322110 1112234556778888665321 1111 1 2
Q ss_pred ccceeeEEECCCCCee
Q 041243 329 HFYGSSHFSAPDGSCT 344 (406)
Q Consensus 329 ~~~G~S~Ii~P~G~i~ 344 (406)
.+|-++.+++|+|.+.
T Consensus 87 ~~yNs~~~i~~~G~i~ 102 (252)
T cd07575 87 KYYNRLYFVTPDGEVY 102 (252)
T ss_pred ceEEEEEEECCCCCEE
Confidence 4667778889999753
No 91
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=45.25 E-value=1.5e+02 Score=26.26 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEecCCC-CCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 112 KKAIFQKLKLLIDAAGVSGVNILCLQEAW-TMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 112 ~~~n~~~i~~~i~~A~~~gvdLVvfPE~~-l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
++..++.+.+.++.|+..|++.++++=.. ..+.. ...+..|..+. +.++.+.+.|+++|+.+..
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~-~~~~~~~~~~~-----~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPE-DDTEENWERLA-----ENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTT-SSHHHHHHHHH-----HHHHHHHHHHHHHTSEEEE
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccccC-CCHHHHHHHHH-----HHHHHHHhhhhhhcceEEE
Confidence 78889999999999999999999988220 00000 11112233332 4678889999999987654
No 92
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=43.82 E-value=1.1e+02 Score=29.51 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHHHCCCcEEEEcCCCCCCCCc---------CcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcc
Q 041243 259 WLAFGLNGAEIVFNPSATVGELSE---------PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGH 329 (406)
Q Consensus 259 ~~~~~~~Gadii~~Psa~~~~~~~---------~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~ 329 (406)
.+..+.+|||+|+.|-.+...... ..+....+..|.+++++++.-- .-.. + ..
T Consensus 24 i~~A~~~gadlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G~-~~~~---------~--------~~ 85 (279)
T cd07579 24 AAEAKATGAELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVAGF-AEAD---------G--------DG 85 (279)
T ss_pred HHHHHHCCCCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEEec-eEcc---------C--------Cc
Confidence 444567899999999865322110 1223344556778888887432 1110 1 13
Q ss_pred cceeeEEECCCCC
Q 041243 330 FYGSSHFSAPDGS 342 (406)
Q Consensus 330 ~~G~S~Ii~P~G~ 342 (406)
+|-+.++++|+|.
T Consensus 86 ~yNs~~vi~~~G~ 98 (279)
T cd07579 86 LYNSAVLVGPEGL 98 (279)
T ss_pred EEEEEEEEeCCee
Confidence 5666788899884
No 93
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.05 E-value=1e+02 Score=22.57 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeec
Q 041243 118 KLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPI 183 (406)
Q Consensus 118 ~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~ 183 (406)
...++++.|++.|.+.+.+-+-..+.. ...+.++++++++.++.|+
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~--------------------~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFG--------------------AVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccC--------------------HHHHHHHHHHcCCeEEEEE
Confidence 577899999999999999999753211 1245566777899998886
No 94
>PRK12677 xylose isomerase; Provisional
Probab=38.86 E-value=2.4e+02 Score=28.80 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=48.0
Q ss_pred CccEEEEEecccCCC-------CcccchhhHHHHHHHHHHHHHHHhhCCCeE-EEecCCCCCCCCCCcc-hhHHhhhcCC
Q 041243 89 RVVRVGLIQNSIVLP-------TTLHFLDQKKAIFQKLKLLIDAAGVSGVNI-LCLQEAWTMPFAFCTR-EKRWCEFAEP 159 (406)
Q Consensus 89 ~~vrValiQ~~i~~~-------~~~p~~~~~~~n~~~i~~~i~~A~~~gvdL-VvfPE~~l~g~~~~~~-~~~~~~~ae~ 159 (406)
.-++|.++.++.-.. -+.|-...++..++.+++.|+.|++-|++. ++||=.--+.|.+... ...|..+.
T Consensus 79 ~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~-- 156 (384)
T PRK12677 79 TGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYR-- 156 (384)
T ss_pred cCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHH--
Confidence 346666665543110 112223556777999999999999999985 5554421111211111 11232222
Q ss_pred CCcHHHHHHHHHHHh--cCcEEEe
Q 041243 160 VDGESTQFLQELARK--YNMVIIS 181 (406)
Q Consensus 160 ~~~~~~~~l~~lAkk--~~i~Iv~ 181 (406)
+.++.+.+.|++ +++.|.+
T Consensus 157 ---eaL~~l~~~A~~~G~gV~laI 177 (384)
T PRK12677 157 ---EAIDLLAAYVKDQGYDLRFAL 177 (384)
T ss_pred ---HHHHHHHHHHHhcCCCcEEEE
Confidence 356677777777 4576554
No 95
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=38.20 E-value=1.1e+02 Score=29.22 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=40.5
Q ss_pred HHHHHHCCCcEEEEcCCCCCCCCc--CcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccceeeEE
Q 041243 259 WLAFGLNGAEIVFNPSATVGELSE--PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHF 336 (406)
Q Consensus 259 ~~~~~~~Gadii~~Psa~~~~~~~--~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~I 336 (406)
.+....+|+|+++.|-.+...... .......+..|.+++++++.-... .. .+| ..++-+..+
T Consensus 32 i~~a~~~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~G~~~-~~--------~~~-------~~~~Ns~~~ 95 (270)
T cd07571 32 TRELADEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAPR-RE--------PGG-------GRYYNSALL 95 (270)
T ss_pred HhhcccCCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEEeeee-ec--------cCC-------CceEEEEEE
Confidence 344456799999999875432111 122233445667899988753321 10 010 135667788
Q ss_pred ECCCCCee
Q 041243 337 SAPDGSCT 344 (406)
Q Consensus 337 i~P~G~i~ 344 (406)
++|+|.++
T Consensus 96 i~~~G~i~ 103 (270)
T cd07571 96 LDPGGGIL 103 (270)
T ss_pred ECCCCCCc
Confidence 99999754
No 96
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=36.88 E-value=1e+02 Score=29.34 Aligned_cols=57 Identities=9% Similarity=-0.088 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEE
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVII 180 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv 180 (406)
++.....+.+.+.++...+.|..+++|||..-+... ...+.-.-...+|.+.++.|+
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g--------------~l~~Fk~Ga~~lA~~~~~PIv 175 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR--------------GLLPFKTGAFHAAIAAGVPII 175 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCC--------------CCCCccHHHHHHHHHcCCCEE
Confidence 344555666666666666778899999998544221 012344556778888888765
No 97
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=34.60 E-value=1.3e+02 Score=24.45 Aligned_cols=47 Identities=13% Similarity=-0.154 Sum_probs=28.9
Q ss_pred HHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 121 LLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 121 ~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
+.+..+..+|..+++|||....... . ..++..-+..+|++.++.|+-
T Consensus 80 ~~~~~~l~~g~~v~ifPeG~~~~~~------~--------~~~f~~g~~~la~~~~~pvvp 126 (130)
T TIGR00530 80 KAAIEVLKQGRSIGVFPEGTRSRGR------D--------ILPFKKGAFHIAIKAGVPILP 126 (130)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCC------C--------CCCcchhHHHHHHHcCCCEEe
Confidence 3334445678899999998543110 0 013345567788888887763
No 98
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=34.47 E-value=1.7e+02 Score=27.79 Aligned_cols=67 Identities=10% Similarity=-0.016 Sum_probs=36.9
Q ss_pred HHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccC---CCCeeEEEEE
Q 041243 123 IDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVN---HGDTIWNTAI 199 (406)
Q Consensus 123 i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~---~~~~~~Nsav 199 (406)
.+....+|+|+|+.|=.+..... . ..+...++.-|.+++++++..-...... .+...+-.+.
T Consensus 162 ~r~l~~~ga~ii~~ps~~~~~~~------~---------~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S~ 226 (280)
T cd07574 162 ARALAEAGADLLLVPSCTDTRAG------Y---------WRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQAA 226 (280)
T ss_pred HHHHHHcCCCEEEECCcCCcccc------H---------HHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccce
Confidence 34445789999999965432211 0 1223345677788899888643221110 0223455567
Q ss_pred EEcCC
Q 041243 200 IIGNH 204 (406)
Q Consensus 200 vi~~~ 204 (406)
+++|+
T Consensus 227 i~~P~ 231 (280)
T cd07574 227 VYTPC 231 (280)
T ss_pred eecCC
Confidence 77775
No 99
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=31.53 E-value=4.1e+02 Score=27.14 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeE-EEecCCCCCCCCCCc-chhHHhhhcCCCCcHHHHHHHHHHHhc--CcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNI-LCLQEAWTMPFAFCT-REKRWCEFAEPVDGESTQFLQELARKY--NMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdL-VvfPE~~l~g~~~~~-~~~~~~~~ae~~~~~~~~~l~~lAkk~--~i~Iv~ 181 (406)
+-++..++.+++.|+.|++-|+.. +++|-.....+.+.. ....|..+. +.+..+.+.|++. ++.|.+
T Consensus 108 ~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~-----e~L~~lae~A~~~G~GV~laL 178 (382)
T TIGR02631 108 SVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMR-----EALNLLAAYAEDQGYGLRFAL 178 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHH-----HHHHHHHHHHHhhCCCcEEEE
Confidence 456788899999999999999974 555543222222221 122233332 3567777777875 576655
No 100
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.22 E-value=51 Score=33.03 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHhhCCCeEEEecCCCC----CC------CC----CCc-ch-hHHhhhcCCCCcHHHHHHHHHHHh
Q 041243 111 QKKAIFQKLKLLIDAAGVSGVNILCLQEAWT----MP------FA----FCT-RE-KRWCEFAEPVDGESTQFLQELARK 174 (406)
Q Consensus 111 ~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l----~g------~~----~~~-~~-~~~~~~ae~~~~~~~~~l~~lAkk 174 (406)
+....++..+++|+.|+++|||-|=||=+-. .. |. +.. .. ..+.++ ....+..+.|.+.|++
T Consensus 10 NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~e~~~~L~~~~~~ 87 (329)
T TIGR03569 10 NHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKL--ELSEEDHRELKEYCES 87 (329)
T ss_pred CccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 4566789999999999999999998884311 10 10 000 00 011111 1335789999999999
Q ss_pred cCcEEEeece
Q 041243 175 YNMVIISPIL 184 (406)
Q Consensus 175 ~~i~Iv~G~~ 184 (406)
+|+.+++...
T Consensus 88 ~Gi~~~stpf 97 (329)
T TIGR03569 88 KGIEFLSTPF 97 (329)
T ss_pred hCCcEEEEeC
Confidence 9999887644
No 101
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=30.60 E-value=2.9e+02 Score=27.66 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=48.3
Q ss_pred ceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCC
Q 041243 243 GKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGT 308 (406)
Q Consensus 243 gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~ 308 (406)
.++.++-||=-..+++.+.+...|++=|+.-..-.+......+...+..++++.++.||.+.+++.
T Consensus 210 ~~V~ii~~~pG~~~~~l~~~~~~~~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~Sr~~~ 275 (335)
T PRK09461 210 QPIGVVTIYPGISAEVVRNFLRQPVKALILRSYGVGNAPQNPALLQELKEASERGIVVVNLTQCMS 275 (335)
T ss_pred CcEEEEEecCCCCHHHHHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 468888888888889888888889888887554333333223444445578899999999999865
No 102
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=29.29 E-value=1.2e+02 Score=24.77 Aligned_cols=51 Identities=16% Similarity=-0.012 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEE
Q 041243 115 IFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVII 180 (406)
Q Consensus 115 n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv 180 (406)
+...+..+.+ ..++|-.|++|||...+.- . .. .+.-.-...+|.+.++.|+
T Consensus 77 ~~~~~~~~~~-~l~~~~~i~ifPEG~~~~~------~-------~~-~~~~~G~~~~a~~~~~~iv 127 (132)
T PF01553_consen 77 NRKALKDIKE-ILRKGGSIVIFPEGTRSRS------G-------EL-LPFKKGAFHIALKAKVPIV 127 (132)
T ss_dssp HHHHHHHHHH-HHHC---EEE-TT-S---B---------------B-----HHHHHHHHHH-----
T ss_pred cchhHHHHHH-HhhhcceeeecCCccCcCC------C-------cc-CCccHHHHHHHHHcCCccc
Confidence 3333333333 3444445999999843211 0 00 2334445666666666664
No 103
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=28.76 E-value=2.3e+02 Score=25.24 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEE
Q 041243 112 KKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVII 180 (406)
Q Consensus 112 ~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv 180 (406)
.+...+.+.++++.+.+.++.+|++-=....+|..+. ........+.+.++++|+++++.++
T Consensus 89 ~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 89 YTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGG-------KVEDTLGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCC-------cccccchhHHHHHHHHHHHhCCCEE
Confidence 4455555666666666678888876211111111100 0011124678899999999998765
No 104
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=27.09 E-value=1.8e+02 Score=28.70 Aligned_cols=99 Identities=21% Similarity=0.195 Sum_probs=54.7
Q ss_pred HhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCC-CceEEcCCc-------e
Q 041243 173 RKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTG-HPVFETAFG-------K 244 (406)
Q Consensus 173 kk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~-~~vf~t~~g-------k 244 (406)
+.|+-..+.+-. ..+...||+.+|+|.+|..+.+|+|.|+..-|+-...-.=..|.-| .-.|+..+- |
T Consensus 110 k~yns~~~~~~~----g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~~~~~~~gkfGi~IC~Di~F~d~A~~~~~ 185 (298)
T KOG0806|consen 110 KLYNSCADSSCP----GDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFTVVDTSYGKFGIFICFDIRFYDPAMILVK 185 (298)
T ss_pred cccCcccccCCC----cchhheeeeeEEeccCCccceeeeeeeccCCCcCCCcccCCCCceEEEEEecccccchHHHHHH
Confidence 556554444321 1145789999999999999999999999764421111000113311 122333321 1
Q ss_pred -EEEEeccCCcc--------hHHHHHHHHCCCcEEEEcCC
Q 041243 245 -IAVNICYGRHH--------PLNWLAFGLNGAEIVFNPSA 275 (406)
Q Consensus 245 -igv~ICyD~~~--------Pe~~~~~~~~Gadii~~Psa 275 (406)
-+-.|+|-..| |..|..+...+|.....+..
T Consensus 186 ~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~ 225 (298)
T KOG0806|consen 186 DGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVH 225 (298)
T ss_pred cCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeee
Confidence 14456666532 45677777777665554433
No 105
>PTZ00056 glutathione peroxidase; Provisional
Probab=25.66 E-value=3.6e+02 Score=24.58 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEec
Q 041243 113 KAIFQKLKLLIDAAGVSGVNILCLQ 137 (406)
Q Consensus 113 ~~n~~~i~~~i~~A~~~gvdLVvfP 137 (406)
...+..+.++.+.-...|+.+|-++
T Consensus 55 ~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 55 KKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEec
Confidence 3445556666665566788888875
No 106
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=25.52 E-value=2.5e+02 Score=26.52 Aligned_cols=57 Identities=18% Similarity=0.020 Sum_probs=34.3
Q ss_pred EEEeccCCcchHHHHHHHHCCCcEEEE--cCCCCCCCC--cCcHHHHHHHHHHHcCcEEEEE
Q 041243 246 AVNICYGRHHPLNWLAFGLNGAEIVFN--PSATVGELS--EPMWPIEARNAAIANSYFVGSI 303 (406)
Q Consensus 246 gv~ICyD~~~Pe~~~~~~~~Gadii~~--Psa~~~~~~--~~~w~~~~r~rAien~~~vv~a 303 (406)
+|++|-|.. ++..+....+|+|+|+. |..+.+... ...+......++++|++.+.++
T Consensus 34 ~V~~~ld~t-~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~ 94 (241)
T PF01784_consen 34 KVLVALDAT-PEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSA 94 (241)
T ss_dssp EEEEESS-S-HHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEEeCC-HHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEe
Confidence 678888876 44566667899999997 655432211 1122344456788999999876
No 107
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=23.13 E-value=1.6e+02 Score=20.18 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=27.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCC
Q 041243 105 TLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWT 141 (406)
Q Consensus 105 ~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l 141 (406)
..|..++..+-..-+.++-..|...|.==||.|+.|.
T Consensus 5 f~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~ 41 (42)
T smart00545 5 FYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWK 41 (42)
T ss_pred EcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCC
Confidence 3455666666677777766678888988899999875
No 108
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=22.74 E-value=1.7e+02 Score=26.30 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhC--CCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 116 FQKLKLLIDAAGVS--GVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 116 ~~~i~~~i~~A~~~--gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
.+.+.+.++...+. +..+++|||.... . ....+..+++|++.++.++-
T Consensus 88 ~~~i~~~~~~l~~~~~~~~lviFPEGTr~----~--------------~~~~~~~~~~a~k~~~p~l~ 137 (193)
T cd07990 88 EKTIKRQLKRLKDSPEPFWLLIFPEGTRF----T--------------EEKKERSQEFAEKNGLPPLK 137 (193)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEeCcccCC----C--------------HHHHHHHHHHHHHcCCCCcc
Confidence 34555555554443 7889999997321 0 12233444778887776654
No 109
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=22.19 E-value=2.6e+02 Score=28.73 Aligned_cols=51 Identities=27% Similarity=0.288 Sum_probs=33.6
Q ss_pred CccEEEEEecccCCCCcccc-------hhhHHHH----HHHHHHHHHHHhhCCCeEEEecCC
Q 041243 89 RVVRVGLIQNSIVLPTTLHF-------LDQKKAI----FQKLKLLIDAAGVSGVNILCLQEA 139 (406)
Q Consensus 89 ~~vrValiQ~~i~~~~~~p~-------~~~~~~n----~~~i~~~i~~A~~~gvdLVvfPE~ 139 (406)
.+-|||+||+.+.+|.++-. +.+.+.. .+.+..+.+.-+..|+++++.+-.
T Consensus 237 ekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKS 298 (534)
T KOG0358|consen 237 EKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKS 298 (534)
T ss_pred hhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHH
Confidence 46799999999998765321 1223333 233444555566789999999986
No 110
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=22.07 E-value=1.1e+02 Score=22.22 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=19.1
Q ss_pred HHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCC
Q 041243 288 EARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLS 348 (406)
Q Consensus 288 ~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~ 348 (406)
..+++++.+|..+-..... |...+++|||+.++-+.
T Consensus 8 ~~ea~~l~~Gr~l~~~~~~-------------------------g~~aa~~pdG~lvAL~~ 43 (56)
T PF09142_consen 8 AEEARDLRHGRRLPAAGPP-------------------------GPVAAFAPDGRLVALLE 43 (56)
T ss_dssp HHHHHHHHTT---B------------------------------S-EEEE-TTS-EEEEEE
T ss_pred HHHHHHHhCCCccCCCCCC-------------------------ceEEEECCCCcEEEEEE
Confidence 4567888888888655322 34789999999987653
No 111
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=21.11 E-value=2.6e+02 Score=24.01 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEE
Q 041243 112 KKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVII 180 (406)
Q Consensus 112 ~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv 180 (406)
.+...+.+.++++.+.+.++++|+.-=. . +..+. ..+ .....+.++++|+++++.++
T Consensus 83 ~~~~~~~l~~li~~~~~~~~~vil~~~~-~-~~~~~---~~~-------~~~~~~~~~~~a~~~~~~~~ 139 (177)
T cd01822 83 PDQTRANLRQMIETAQARGAPVLLVGMQ-A-PPNYG---PRY-------TRRFAAIYPELAEEYGVPLV 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEecC-C-CCccc---hHH-------HHHHHHHHHHHHHHcCCcEe
Confidence 4455556666666666668888875210 0 11110 011 13467788899999987655
Done!