Query 041243
Match_columns 406
No_of_seqs 228 out of 1523
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vhh_A CG3027-PA; hydrolase; 2 100.0 1.9E-79 6.6E-84 623.1 36.3 382 19-404 4-388 (405)
2 3p8k_A Hydrolase, carbon-nitro 100.0 4.9E-52 1.7E-56 402.3 26.7 262 87-383 17-281 (281)
3 3hkx_A Amidase; alpha-beta-BET 100.0 1.8E-52 6.1E-57 405.7 20.0 267 86-386 16-283 (283)
4 3ivz_A Nitrilase; alpha-beta s 100.0 1.5E-51 5.1E-56 394.4 24.7 257 91-383 2-261 (262)
5 2w1v_A Nitrilase-2, nitrilase 100.0 3.5E-50 1.2E-54 387.5 27.1 262 90-383 3-270 (276)
6 1f89_A 32.5 kDa protein YLR351 100.0 8.3E-50 2.8E-54 387.5 27.3 270 87-385 7-288 (291)
7 2e11_A Hydrolase; dimethylarse 100.0 3.7E-50 1.3E-54 385.2 18.6 258 90-384 3-266 (266)
8 1uf5_A N-carbamyl-D-amino acid 100.0 1.6E-49 5.4E-54 387.3 22.8 276 88-386 1-301 (303)
9 2dyu_A Formamidase; AMIF, CEK, 100.0 6.9E-46 2.3E-50 367.7 30.1 259 89-376 12-275 (334)
10 2uxy_A Aliphatic amidase; nitr 100.0 5.5E-46 1.9E-50 369.5 28.3 272 88-391 10-286 (341)
11 1ems_A Nitfhit, NIT-fragIle hi 100.0 5E-47 1.7E-51 388.7 19.5 269 89-387 13-290 (440)
12 3n05_A NH(3)-dependent NAD(+) 100.0 4.3E-42 1.5E-46 364.2 22.1 247 88-364 2-263 (590)
13 4f4h_A Glutamine dependent NAD 100.0 4.8E-42 1.6E-46 361.5 21.4 280 89-400 5-305 (565)
14 3ilv_A Glutamine-dependent NAD 100.0 7.9E-42 2.7E-46 364.5 22.4 279 89-399 4-307 (634)
15 3sdb_A Glutamine-dependent NAD 100.0 4.4E-40 1.5E-44 353.0 22.1 263 88-379 10-295 (680)
16 3hkx_A Amidase; alpha-beta-BET 82.3 3 0.0001 38.9 7.4 72 122-210 173-244 (283)
17 3p8k_A Hydrolase, carbon-nitro 77.7 4.1 0.00014 38.0 6.7 70 124-210 176-245 (281)
18 3ivz_A Nitrilase; alpha-beta s 76.6 4.4 0.00015 37.2 6.5 68 123-210 155-222 (262)
19 1f89_A 32.5 kDa protein YLR351 75.7 3.7 0.00013 38.2 5.8 72 124-210 179-250 (291)
20 2w1v_A Nitrilase-2, nitrilase 74.5 4.2 0.00014 37.6 5.8 72 124-210 163-234 (276)
21 2uxy_A Aliphatic amidase; nitr 73.3 7.5 0.00026 37.4 7.4 72 122-210 174-245 (341)
22 2dyu_A Formamidase; AMIF, CEK, 73.0 8.6 0.0003 36.8 7.8 71 122-209 174-244 (334)
23 3obe_A Sugar phosphate isomera 72.7 18 0.0006 33.8 9.8 62 110-181 107-168 (305)
24 3cqj_A L-ribulose-5-phosphate 69.5 23 0.0008 32.4 9.7 66 109-181 100-165 (295)
25 3kws_A Putative sugar isomeras 68.5 23 0.0008 32.2 9.5 67 109-181 96-164 (287)
26 2e11_A Hydrolase; dimethylarse 66.5 14 0.00046 33.8 7.3 65 130-210 165-229 (266)
27 1i60_A IOLI protein; beta barr 62.4 28 0.00097 31.1 8.7 63 110-181 77-141 (278)
28 4f4h_A Glutamine dependent NAD 62.1 10 0.00034 39.3 6.0 73 123-210 178-250 (565)
29 1ems_A Nitfhit, NIT-fragIle hi 60.0 7.7 0.00026 38.5 4.6 73 123-210 178-250 (440)
30 1vli_A Spore coat polysacchari 55.5 20 0.00068 35.3 6.5 72 112-184 39-122 (385)
31 1uf5_A N-carbamyl-D-amino acid 54.9 20 0.00068 33.2 6.3 72 259-344 31-121 (303)
32 2vhh_A CG3027-PA; hydrolase; 2 54.5 36 0.0012 33.5 8.4 72 258-344 104-192 (405)
33 4h41_A Putative alpha-L-fucosi 53.3 28 0.00097 33.6 7.1 65 120-184 57-121 (340)
34 3l23_A Sugar phosphate isomera 52.0 62 0.0021 29.9 9.3 61 111-181 102-164 (303)
35 4fva_A 5'-tyrosyl-DNA phosphod 51.7 9 0.00031 33.6 3.2 44 89-139 10-53 (256)
36 3n05_A NH(3)-dependent NAD(+) 50.6 36 0.0012 35.2 8.0 73 123-210 173-245 (590)
37 3dx5_A Uncharacterized protein 47.8 68 0.0023 28.9 8.7 64 110-181 77-141 (286)
38 3qc0_A Sugar isomerase; TIM ba 47.7 40 0.0014 30.1 7.0 67 109-181 75-141 (275)
39 3tva_A Xylose isomerase domain 46.8 45 0.0015 30.2 7.3 63 110-181 95-157 (290)
40 3u0h_A Xylose isomerase domain 46.5 38 0.0013 30.3 6.7 63 111-181 78-140 (281)
41 1k77_A EC1530, hypothetical pr 44.1 65 0.0022 28.4 7.8 63 110-181 78-142 (260)
42 3cny_A Inositol catabolism pro 41.2 95 0.0032 28.0 8.6 67 110-181 83-159 (301)
43 3vni_A Xylose isomerase domain 40.6 1.5E+02 0.0052 26.5 9.9 66 109-181 80-150 (294)
44 3ayv_A Putative uncharacterize 39.3 54 0.0019 29.0 6.4 66 109-180 68-134 (254)
45 3bdk_A D-mannonate dehydratase 38.6 88 0.003 30.6 8.2 29 110-138 97-125 (386)
46 1xla_A D-xylose isomerase; iso 38.6 99 0.0034 29.8 8.7 66 110-181 109-179 (394)
47 1wdu_A TRAS1 ORF2P; four-layer 38.0 27 0.00091 30.9 4.1 40 91-142 18-57 (245)
48 4f1h_A Tyrosyl-DNA phosphodies 37.1 15 0.00052 31.4 2.2 25 112-139 19-43 (250)
49 3ngf_A AP endonuclease, family 36.0 95 0.0032 27.7 7.6 64 110-181 86-149 (269)
50 2qw5_A Xylose isomerase-like T 34.7 1.3E+02 0.0043 28.0 8.5 67 110-181 102-182 (335)
51 2hk0_A D-psicose 3-epimerase; 34.1 1.5E+02 0.0052 27.0 8.8 67 110-181 100-169 (309)
52 3nvt_A 3-deoxy-D-arabino-heptu 31.5 1.1E+02 0.0038 29.9 7.5 61 115-186 154-216 (385)
53 1iuq_A Glycerol-3-phosphate ac 30.0 1.2E+02 0.004 29.6 7.3 65 110-178 203-267 (367)
54 4gz1_A Tyrosyl-DNA phosphodies 28.9 29 0.00098 30.2 2.6 24 113-139 26-49 (256)
55 2zds_A Putative DNA-binding pr 28.6 1.2E+02 0.0041 27.9 7.1 66 111-181 105-178 (340)
56 1nmo_A Hypothetical protein YB 27.4 1.8E+02 0.0063 26.2 7.9 57 246-303 37-96 (247)
57 2him_A L-asparaginase 1; hydro 26.9 1.4E+02 0.0048 28.8 7.4 67 242-308 229-295 (358)
58 4gew_A 5'-tyrosyl-DNA phosphod 26.2 39 0.0013 32.5 3.2 44 89-139 116-159 (362)
59 2qul_A D-tagatose 3-epimerase; 25.7 83 0.0028 28.2 5.3 67 110-181 81-151 (290)
60 2wqp_A Polysialic acid capsule 25.3 1.1E+02 0.0038 29.5 6.2 71 113-184 31-112 (349)
61 3g8r_A Probable spore coat pol 25.0 35 0.0012 33.1 2.5 74 111-184 15-99 (350)
62 1o7j_A L-asparaginase; atomic 25.0 1.9E+02 0.0067 27.3 7.9 65 242-308 217-281 (327)
63 2wlt_A L-asparaginase; hydrola 24.8 2E+02 0.0069 27.3 8.0 65 242-308 218-282 (332)
64 3mpr_A Putative endonuclease/e 24.2 85 0.0029 28.6 5.1 20 120-139 33-52 (298)
65 3ilv_A Glutamine-dependent NAD 24.2 89 0.003 32.6 5.7 72 123-210 175-247 (634)
66 1gml_A T-complex protein 1 sub 23.9 2.5E+02 0.0086 23.9 7.8 109 70-184 4-128 (178)
67 3teb_A Endonuclease/exonucleas 23.8 35 0.0012 30.1 2.2 27 111-140 18-44 (266)
68 1wsa_A Asparaginase, asparagin 23.8 2.1E+02 0.0072 27.1 7.9 65 242-308 215-279 (330)
69 1nns_A L-asparaginase II; amid 22.7 2.3E+02 0.0077 26.9 7.8 65 242-308 211-275 (326)
70 3nxk_A Cytoplasmic L-asparagin 22.5 2.2E+02 0.0074 27.2 7.6 65 242-308 220-285 (334)
71 2ei9_A Non-LTR retrotransposon 22.0 47 0.0016 29.8 2.7 19 122-140 25-43 (240)
72 2o3h_A DNA-(apurinic or apyrim 21.8 86 0.0029 28.0 4.5 16 127-142 52-67 (285)
73 3dmy_A Protein FDRA; predicted 21.7 1.2E+02 0.004 30.6 5.8 45 118-182 48-92 (480)
74 1muw_A Xylose isomerase; atomi 21.7 2.6E+02 0.0089 26.6 8.3 66 110-181 109-179 (386)
75 2jc4_A Exodeoxyribonuclease II 21.0 68 0.0023 27.9 3.6 21 121-141 17-37 (256)
76 2knj_A Microplusin preprotein; 20.2 23 0.00077 27.5 0.1 30 17-46 50-79 (90)
No 1
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=100.00 E-value=1.9e-79 Score=623.12 Aligned_cols=382 Identities=62% Similarity=1.068 Sum_probs=324.3
Q ss_pred CccccHHHHHHcCCCchhHhhhhhhhccCCCCCCc-cccccccchhhhhhcCCceEeeeeecccccccCCCCccEEEEEe
Q 041243 19 CGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPL-ELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQ 97 (406)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vrValiQ 97 (406)
.+|+|||++|+||||+++|+|||||||| +++ ++|+||+.+.++|++++|+|+||.|.+.+|+++++++||||++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rVAlvQ 79 (405)
T 2vhh_A 4 FELKNLNDCLEKHLPPDELKEVKRILYG----VEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQ 79 (405)
T ss_dssp --CCCHHHHHTTTSCHHHHHHHHHHHSS----SSSCCBCCCCHHHHHHHHHTTCEEEEEECCCCCCSSSCCCEEEEEEEE
T ss_pred cccchHHHHHHhcCCHHHHHHHHHHhcC----CccCccCCCCHHHHHHhhhcCceEeeeeeccchhhhcCCCCCEEEEEe
Confidence 4799999999999999999999999999 888 89999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchh-HHhhhcCCC-CcHHHHHHHHHHHhc
Q 041243 98 NSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREK-RWCEFAEPV-DGESTQFLQELARKY 175 (406)
Q Consensus 98 ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~-~~~~~ae~~-~~~~~~~l~~lAkk~ 175 (406)
+++...+..|..++.++|++++.++++.|+++|+|||||||+|++||.++.++. .|.++++.. .+++++.|+++|+++
T Consensus 80 ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~~l~~lA~~~ 159 (405)
T 2vhh_A 80 NSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAY 159 (405)
T ss_dssp CCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHHHHHHHHHHT
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHHHHHHHHHHC
Confidence 999876655667899999999999999999999999999999999997765332 366777776 488999999999999
Q ss_pred CcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEeccCCcc
Q 041243 176 NMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHH 255 (406)
Q Consensus 176 ~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICyD~~~ 255 (406)
+++|++|+.++....++++||++++|+++|+++++|+|+||+++|.|.|+.+|.+|+.++++|+++++|||++||||++|
T Consensus 160 ~i~Iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g~f~E~~~f~~G~~~~~vf~~~~~riG~~ICyD~~f 239 (405)
T 2vhh_A 160 NMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHH 239 (405)
T ss_dssp TCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC----------CCCCSCCCEEEETTEEEEECCGGGGGC
T ss_pred CEEEEEeceecccCCCCcEEEEEEEECCCCeEEEEEecccCCCCCCcCcccceeCCCCCCeeEEECCEEEEEEEeccccC
Confidence 99999999988643246899999999999999999999999999999999999999966899999999999999999999
Q ss_pred hHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccceeeE
Q 041243 256 PLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSH 335 (406)
Q Consensus 256 Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~ 335 (406)
|++++.++.+|||+|++|++|.+..+..+|..++++||+||++||++||++|.+.+++.+++++|+++|.+...|+|.|+
T Consensus 240 Pe~~r~la~~GAdill~psa~~~~~~~~~w~~l~raRAiEn~~~Vv~aN~vG~~~~~~~~~~~~g~~~~~~~~~f~G~S~ 319 (405)
T 2vhh_A 240 PQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSY 319 (405)
T ss_dssp HHHHHHHHHTTCSEEEEEECCBCTTTHHHHHHHHHHHHHHHTSEEEEEECEECCCCC-----------------EECCCC
T ss_pred hHHHHHHHHcCCCEEEEcccCCCCCCHHHHHHHHHHHHHHcCceEEEeccccccccccccccccCccccccCceeccccc
Confidence 99999999999999999999987766779999999999999999999999999988889999999888888888999999
Q ss_pred EECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHhcccCCCCCCccccCCCC
Q 041243 336 FSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDPLL 404 (406)
Q Consensus 336 Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~~~~~~~~~~~~~~~~~~ 404 (406)
|++|+|+++++++..++++++++||++.++++|++|++++++|+|+|+.++++.++++|+||||++|.+
T Consensus 320 IidP~G~vla~~~~~~e~il~aeiDl~~~~~~R~~~p~~~~rR~~lY~~~~~~~~~~~~~~~~~~~~~~ 388 (405)
T 2vhh_A 320 VAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLYAESFKKASEHGFKPQIIKETQF 388 (405)
T ss_dssp CBCTTSCBCCCCCSSSCEEEEEEEETTHHHHHHHHHCTTTTCCHHHHHHHHHHHHSTTCCCCEECCC--
T ss_pred eECCCCCEeeccCCCCCeEEEEEECHHHHHHHHHhCCchhhcCHHHHHHHHHHhhcCCCCCccccCCCC
Confidence 999999999998878999999999999999999999999999999999999999999999999999865
No 2
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.9e-52 Score=402.26 Aligned_cols=262 Identities=21% Similarity=0.301 Sum_probs=235.8
Q ss_pred CCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHH
Q 041243 87 EPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQ 166 (406)
Q Consensus 87 ~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~ 166 (406)
..++||||++|+++. .++.+.|++++.++++.|+++|+|||||||++++||... .+.+.++...+++++
T Consensus 17 ~~~~~kva~~Q~~~~-------~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~----~~~~~a~~~~~~~~~ 85 (281)
T 3p8k_A 17 RGSHMKVQIYQLPIV-------FGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLE----HLNEKADNNLGQSFS 85 (281)
T ss_dssp TTSEEEEEEEECCCC-------TTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGG----GHHHHSEETTHHHHH
T ss_pred cCCCcEEEEEeccCC-------cCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChh----HHHHhhhccCcHHHH
Confidence 457899999999976 378999999999999999999999999999999999642 244556656678999
Q ss_pred HHHHHHHhcCcEEEeece-eeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCC-ceEEc-CCc
Q 041243 167 FLQELARKYNMVIISPIL-ERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGH-PVFET-AFG 243 (406)
Q Consensus 167 ~l~~lAkk~~i~Iv~G~~-e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~-~vf~t-~~g 243 (406)
.|+++|++++++|++|+. ++. ++++||++++|+++|+++++|+|.||+++ |.|..+|.+|+. . .+|++ +++
T Consensus 86 ~l~~la~~~~i~iv~G~~~~~~---~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--f~E~~~f~~G~~-~~~v~~~~~~~ 159 (281)
T 3p8k_A 86 FIKHLAEKYKVDIVAGSVSNIR---NNQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHEFLTAGEY-VAEPFQLSDGT 159 (281)
T ss_dssp HHHHHHHHHTCEEEEEEEEEEE---TTEEEEEEEEECTTSCEEEEEECSCCCTT--TTGGGTCCCCSS-CCCCEECTTCC
T ss_pred HHHHHHhhCCeEEEEeeeEEcc---CCcEEEEEEEEcCCCeEEEEEeeEECCCC--cCccccCcCCCC-CceeEEeCCCc
Confidence 999999999999999975 444 67899999999999999999999999863 679999999997 6 99999 999
Q ss_pred eEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCC
Q 041243 244 KIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQ 323 (406)
Q Consensus 244 kigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~ 323 (406)
|||++||||++||++++.++.+|||+|++|++|.... ..+|..++++||+||++|+++||++|.+. +
T Consensus 160 ~ig~~IC~D~~fpe~~r~~~~~Gadli~~psa~~~~~-~~~~~~~~~arA~en~~~vv~~n~~G~~~---------~--- 226 (281)
T 3p8k_A 160 YVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSR-LQHWHSLLKARAIENNMFVIGTNSTGFDG---------N--- 226 (281)
T ss_dssp EEEEEEGGGGGCTHHHHHHHHTTCCEEEEEECCBGGG-HHHHHHHHHHHHHHHTSEEEEEECEEECS---------S---
T ss_pred EEEEEEecCCCCcHHHHHHHHCCCCEEEECCCCCCcc-HHHHHHHHHHHHHHcCCEEEEEccCcCCC---------C---
Confidence 9999999999999999999999999999999987553 57899999999999999999999999852 2
Q ss_pred CCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHH
Q 041243 324 HKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYA 383 (406)
Q Consensus 324 ~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~ 383 (406)
..|+|.|+|++|+|+++++ ...++++++++||++.++++|.+++++.+||+|+|.
T Consensus 227 ----~~~~G~S~ii~p~G~vl~~-~~~~e~~l~~~id~~~~~~~R~~~p~~~~rr~~lY~ 281 (281)
T 3p8k_A 227 ----TEYAGHSIVINPNGDLVGE-LNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK 281 (281)
T ss_dssp ----CEEECCCEEECTTSCEEEE-CCSSCEEEEEEEETHHHHHHHHHSCGGGTCCTTTCC
T ss_pred ----cEEeeeEEEECCCCCEEEe-cCCCCeEEEEEEcHHHHHHHHHhCcchhhcChhhcC
Confidence 4789999999999999998 678999999999999999999999999999999993
No 3
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=100.00 E-value=1.8e-52 Score=405.73 Aligned_cols=267 Identities=19% Similarity=0.247 Sum_probs=227.6
Q ss_pred CCCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHh-hhcCCCCcHH
Q 041243 86 REPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWC-EFAEPVDGES 164 (406)
Q Consensus 86 ~~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~-~~ae~~~~~~ 164 (406)
...++||||++|+++.. ++.++|++++.++++.|+++|+|||||||++++||... .+. ++++...+++
T Consensus 16 ~~~~~~rva~~Q~~~~~-------~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~----d~~~~~a~~~~~~~ 84 (283)
T 3hkx_A 16 IRGSHMRIALMQHTARP-------LDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPS----QICAQVSAEQVDAA 84 (283)
T ss_dssp CTTEEEEEEEEEBCCCT-------TCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHH----HHHHHCCHHHHHHH
T ss_pred ecCCccEEEEEeCCCCC-------CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChH----HHHHHhccccCCHH
Confidence 34567999999999763 68999999999999999999999999999999999532 122 4554444689
Q ss_pred HHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCce
Q 041243 165 TQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGK 244 (406)
Q Consensus 165 ~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gk 244 (406)
++.|+++|++++++|++|++++.. ++++||++++|+++|+++++|+|.||++. .|..+|.+|+...++|+++++|
T Consensus 85 ~~~l~~~a~~~~i~iv~G~~~~~~--~~~~yNs~~~i~~~G~i~~~y~K~hL~~~---~E~~~f~~G~~~~~v~~~~~~~ 159 (283)
T 3hkx_A 85 RSRLRGIARDRGIALVWSLPGPEG--PEQRGITAELADEHGEVLASYQKVQLYGP---EEKAAFVPGEQPPPVLSWGGRQ 159 (283)
T ss_dssp HHHHHHHHHHTTSEEEECCBCSSC--TTTCCBEEEEECTTSCEEEEEECSSCCHH---HHHHHSCCCCSCCCEEEETTEE
T ss_pred HHHHHHHHHHhCCEEEEEEEEEcC--CCCEEEEEEEEcCCCcEEEEEccccCCCc---CchhhccCCCCCceEEEECCEE
Confidence 999999999999999999988763 36899999999999999999999999752 4888999999756899999999
Q ss_pred EEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCC
Q 041243 245 IAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQH 324 (406)
Q Consensus 245 igv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~ 324 (406)
||++||||++||++++.++.+|||+|++|++|....+ .+|..++++||+||++|+++||++|.+. +
T Consensus 160 ig~~IC~D~~fpe~~r~l~~~Ga~li~~ps~~~~~~~-~~~~~~~~~rA~en~~~vv~~n~~G~~~---------~---- 225 (283)
T 3hkx_A 160 LSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDET-SVPGILLPARAVENGITLAYANHCGPEG---------G---- 225 (283)
T ss_dssp EEECCGGGGGSHHHHHHHHHTTCSEEEEECCCBSCCT-HHHHTHHHHHHHHHTCEEEEECBEEEET---------T----
T ss_pred EEEEEecCcCCHHHHHHHHHCCCCEEEECCCCCCccc-HHHHHHHHHHHHHhCCEEEEEccccCCC---------C----
Confidence 9999999999999999999999999999999876543 6899999999999999999999999852 2
Q ss_pred CCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHH
Q 041243 325 KDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEML 386 (406)
Q Consensus 325 ~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~ 386 (406)
..|.|.|+|++|+|+++++++ .++++++++||++.++++|..++++.++|+|+|+.++
T Consensus 226 ---~~~~G~S~ii~p~G~vl~~~~-~~e~~l~a~id~~~~~~~R~~~~~~~~rr~~ly~~l~ 283 (283)
T 3hkx_A 226 ---LVFDGGSVVVGPAGQPLGELG-VEPGLLVVDLPDQSQDAGSDSADYLQDRRAELHRNWL 283 (283)
T ss_dssp ---EEEECCCEEECTTSCEEEECC-SSCEEEEEEEEC----------CHHHHSCHHHHHHHC
T ss_pred ---eEEeeEEEEECCCCCEEEecC-CCCeEEEEEECHHHHHHHHHhCChhHhcCHhhhhhcC
Confidence 578999999999999999987 8899999999999999999999999999999999874
No 4
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=100.00 E-value=1.5e-51 Score=394.45 Aligned_cols=257 Identities=29% Similarity=0.483 Sum_probs=233.4
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCC-CCcHHHHHHH
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEP-VDGESTQFLQ 169 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~-~~~~~~~~l~ 169 (406)
||||++|+++. .+|.+.|++++.++++.|+++|+|||||||++++||.+.... .+.++++. ..+++++.|+
T Consensus 2 ~rva~~Q~~~~-------~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~-~~~~~a~~~~~~~~~~~l~ 73 (262)
T 3ivz_A 2 VKVAYVQMNPQ-------ILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETRE-EVFEIAQKIPEGETTTFLM 73 (262)
T ss_dssp CEEEEEECCCC-------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSCHH-HHHHHCBCTTTSHHHHHHH
T ss_pred eEEEEEeccCC-------CCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCCHH-HHHHhcCccCCCHHHHHHH
Confidence 89999999875 378999999999999999999999999999999999764432 35566764 3578999999
Q ss_pred HHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEe
Q 041243 170 ELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNI 249 (406)
Q Consensus 170 ~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~I 249 (406)
++|++++++|++|+++++ ++++||++++|+++| ++++|+|.||+ |.|..+|.+|+...++|+++++|||++|
T Consensus 74 ~~a~~~~~~iv~G~~~~~---~~~~yNs~~~i~~~G-~~~~y~K~hL~----~~E~~~f~~G~~~~~v~~~~~~~ig~~I 145 (262)
T 3ivz_A 74 DVARDTGVYIVAGTAEKD---GDVLYNSAVVVGPRG-FIGKYRKIHLF----YREKFFFEPGDLGFRVFDLGFMKVGVMI 145 (262)
T ss_dssp HHHHHHCCEEEEEEEEEE---TTEEEEEEEEEETTE-EEEEEECSSCC----GGGGGTCBCCCSCSCEEECSSCEEEECC
T ss_pred HHHHHcCcEEEEeEEEee---CCcEEEEEEEEcCCe-eEEEEeecccC----CchhceEeCCCCCceEEEECCEEEEEEE
Confidence 999999999999998887 679999999999999 99999999995 5899999999945899999999999999
Q ss_pred ccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcc
Q 041243 250 CYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGH 329 (406)
Q Consensus 250 CyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~ 329 (406)
|||++||++++.++.+|||+|++|++|... .|..++++||+||++|+++||++|.+. + ..
T Consensus 146 C~D~~fpe~~r~~~~~ga~li~~ps~~~~~----~~~~~~~~rA~en~~~vv~~n~~G~~~---------~-------~~ 205 (262)
T 3ivz_A 146 CFDWFFPESARTLALKGADVIAHPANLVMP----YAPRAMPIRALENKVYTVTADRVGEER---------G-------LK 205 (262)
T ss_dssp GGGGGSHHHHHHHHHTTCSEEEEEECCCSS----CHHHHHHHHHHHHTCEEEEEECCSEET---------T-------EE
T ss_pred ecCCCchHHHHHHHHCCCCEEEEcCCCCch----HHHHHHHHHHHhcCcEEEEECCCCcCC---------C-------ce
Confidence 999999999999999999999999998653 799999999999999999999999862 2 46
Q ss_pred cceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhh--cCCCccCchHHHH
Q 041243 330 FYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDK--WGFRMTARYELYA 383 (406)
Q Consensus 330 ~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~--~~~~~~~r~dlY~ 383 (406)
|+|.|+|++|+|+++++++..++++++++||++.+++.|.+ ++++.+||+|+|.
T Consensus 206 ~~G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~R~~~~~p~l~~rr~~lY~ 261 (262)
T 3ivz_A 206 FIGKSLIASPKAEVLSMASETEEEVGVAEIDLSLVRNKRINDLNDIFKDRREEYYF 261 (262)
T ss_dssp CCCCCEEECTTSCEEEECCSSCCEEEEEECCHHHHHCCEEETTEEHHHHCCGGGSC
T ss_pred EeeeEEEECCCCCEeecCCCCCceEEEEEEcHHHHHHHhhcccCchhhhcCHhhhC
Confidence 89999999999999999988888999999999999999987 8999999999995
No 5
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=100.00 E-value=3.5e-50 Score=387.55 Aligned_cols=262 Identities=25% Similarity=0.411 Sum_probs=231.3
Q ss_pred ccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHH
Q 041243 90 VVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQ 169 (406)
Q Consensus 90 ~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~ 169 (406)
+||||++|+++. ++.+.|++++.++++.|++.|+|||||||++++||... .+..+++...+++++.|+
T Consensus 3 ~~~va~vQ~~~~--------~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~----~~~~~~~~~~~~~~~~l~ 70 (276)
T 2w1v_A 3 TFRLALIQLQVS--------SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTT----YFPDYAEKIPGESTQKLS 70 (276)
T ss_dssp EEEEEEEECCCC--------SCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTT----THHHHCBCSSSHHHHHHH
T ss_pred ccEEEEEecccc--------CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHH----HHHHHhccCCCHHHHHHH
Confidence 599999999854 57899999999999999999999999999999998531 233455555688999999
Q ss_pred HHHHhcCcEEEeec-eeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCC----CCC-CCCcccceecCCCCCceEEcCCc
Q 041243 170 ELARKYNMVIISPI-LERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIP----RVG-DFNESTYYMEGNTGHPVFETAFG 243 (406)
Q Consensus 170 ~lAkk~~i~Iv~G~-~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~----~~g-~f~E~~~~~~G~~~~~vf~t~~g 243 (406)
++|++++++|++|+ .++. ++++||++++|+++|+++++|+|.||+ +++ .|.|..+|.+|+. .++|+++++
T Consensus 71 ~~a~~~~~~iv~G~~~~~~---~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~-~~v~~~~~~ 146 (276)
T 2w1v_A 71 EVAKESSIYLIGGSIPEED---AGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDS-FSTFDTPYC 146 (276)
T ss_dssp HHHHHHTSEEECCCEEEEE---TTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCC-CCEEECSSC
T ss_pred HHHHHcCeEEEecceeecC---CCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCC-ceeEEeCCc
Confidence 99999999999995 4554 568999999999999999999999994 222 3468899999986 899999999
Q ss_pred eEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCC
Q 041243 244 KIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQ 323 (406)
Q Consensus 244 kigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~ 323 (406)
|||++||||++||++++.++.+|||+|++|++|....+..+|..++++||+||++|+++||++|.+. ++
T Consensus 147 ~ig~~ICyD~~fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~--------~~--- 215 (276)
T 2w1v_A 147 KVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDK--------AS--- 215 (276)
T ss_dssp EEEECCGGGGGCHHHHHHHHHTTEEEEEEECCCCTTHHHHHHHHHHHHHHHHHTCEEEEECCCCCTT--------SS---
T ss_pred eEEEEEEeccccHHHHHHHHHcCCCEEEECCcCCCcCCHHHHHHHHHHHHHHcCcEEEEecccccCC--------CC---
Confidence 9999999999999999999999999999999887655567899999999999999999999999852 11
Q ss_pred CCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHH
Q 041243 324 HKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYA 383 (406)
Q Consensus 324 ~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~ 383 (406)
..|+|.|+|++|+|+++++++. ++++++++||++.++.+|..++++.++|+|+|.
T Consensus 216 ----~~~~G~S~ii~p~G~v~~~~~~-~e~~l~~~id~~~~~~~R~~~~~~~~~r~~~y~ 270 (276)
T 2w1v_A 216 ----YVAWGHSTVVDPWGQVLTKAGT-EETILYSDIDLKKLAEIRQQIPILKQKRADLYT 270 (276)
T ss_dssp ----SCCCCCCEEECTTSCEEEECCS-SSEEEEEEEEHHHHHHHHHHSCGGGSCCTTTEE
T ss_pred ----ceeeeEeEEECCCCCEeEEcCC-CCeEEEEEEcHHHHHHHHHhCChhHhCCHHHhh
Confidence 4688999999999999998876 899999999999999999999999999999985
No 6
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=100.00 E-value=8.3e-50 Score=387.54 Aligned_cols=270 Identities=25% Similarity=0.413 Sum_probs=226.9
Q ss_pred CCCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHH--hhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCC--C-
Q 041243 87 EPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAA--GVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPV--D- 161 (406)
Q Consensus 87 ~~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A--~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~--~- 161 (406)
+.++||||++|+++.. .+.+.|++++.++++.| ++.|+|||||||++++||.. ..+..+++.. .
T Consensus 7 m~~~~~va~vQ~~~~~-------~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~----~~~~~~~~~~~~~~ 75 (291)
T 1f89_A 7 LSQKIKVALVQLSGSS-------PDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYST----DQFRKYSEVINPKE 75 (291)
T ss_dssp BSSCEEEEEEECCCCC-------SCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCH----HHHHHHTTBCCSSS
T ss_pred ccccceEEEEeccCCc-------CCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCCh----HHHHHHhhhhccCC
Confidence 3457999999998542 67899999999999999 88999999999999999842 2233455544 3
Q ss_pred -cHHHHHHHHHHHhcCcEEEeec-eeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCC-----CCCCCcccceecCCCC
Q 041243 162 -GESTQFLQELARKYNMVIISPI-LERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPR-----VGDFNESTYYMEGNTG 234 (406)
Q Consensus 162 -~~~~~~l~~lAkk~~i~Iv~G~-~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~-----~g~f~E~~~~~~G~~~ 234 (406)
+++++.|+++|++++++|++|+ .+++.. ++++||++++|+++|+++++|+|.||+. ...|.|..+|.+|+.
T Consensus 76 ~~~~~~~l~~~a~~~~~~iv~G~~~~~~~~-~~~~yNs~~~i~~~G~i~~~y~K~hLf~e~~P~~~~~~E~~~f~~G~~- 153 (291)
T 1f89_A 76 PSTSVQFLSNLANKFKIILVGGTIPELDPK-TDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEK- 153 (291)
T ss_dssp CCHHHHHHHHHHHHSSCEEECCCEEEECTT-TCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCC-
T ss_pred CChHHHHHHHHHHHcCcEEEeceeecccCC-CCceEEEEEEECCCCcEEeEEeeeccCCCccCccccccccccccCCCC-
Confidence 6899999999999999999995 455411 2689999999999999999999999953 124568899999996
Q ss_pred CceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCC
Q 041243 235 HPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNP 314 (406)
Q Consensus 235 ~~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~ 314 (406)
.++|+++++|||++||||++||++++.++.+|||+|++|++|....+..+|..++++||+||++|+++||++|...
T Consensus 154 ~~v~~~~~~~ig~~ICyD~~fpe~~r~l~~~Ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~---- 229 (291)
T 1f89_A 154 STTIDTKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQ---- 229 (291)
T ss_dssp CEEEEETTEEEEECCGGGGGCHHHHHHHHHTTEEEEEEECCCBTTHHHHHHHHHHHHHHHHHTSEEEEECCCCCTT----
T ss_pred CceEecCCeeEEEEEecccCchHHHHHHHhhCCCEEEECCcCCCCCcHHHHHHHHHHHHHHcCCEEEEecCccCCC----
Confidence 8999999999999999999999999999999999999999887655567899999999999999999999999642
Q ss_pred CCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHH
Q 041243 315 FTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEM 385 (406)
Q Consensus 315 ~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~ 385 (406)
++ ..|+|.|+|++|+|+++++++. ++++++++||++.++.+|+.++++.++|+|+|..+
T Consensus 230 ----~~-------~~~~G~S~ii~p~G~vl~~~~~-~e~~l~~~id~~~~~~~R~~~~~~~~~r~~~y~~~ 288 (291)
T 1f89_A 230 ----SS-------YHAYGHSIVVDPRGKIVAEAGE-GEEIIYAELDPEVIESFRQAVPLTKQRRFDVYSDV 288 (291)
T ss_dssp ----SS-------SCBCCCCEEECTTSCEEEECCS-SSEEEEEEECHHHHHHHHHHSCCCCCCCC------
T ss_pred ----CC-------CeeeeEEEEECCCCCEEEecCC-CCeEEEEEECHHHHHHHHHhCChhHhCChhhhhhh
Confidence 12 4789999999999999998875 89999999999999999999999999999999754
No 7
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.7e-50 Score=385.16 Aligned_cols=258 Identities=18% Similarity=0.225 Sum_probs=228.3
Q ss_pred ccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHH
Q 041243 90 VVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQ 169 (406)
Q Consensus 90 ~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~ 169 (406)
+||||++|+++.. ++.+.|++++.++++.| +.|+|||||||++++||. . ....+++...+++.+.|+
T Consensus 3 ~~kva~~Q~~~~~-------~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~-~----~~~~~a~~~~~~~~~~l~ 69 (266)
T 2e11_A 3 DLRISLVQGSTRW-------HDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFS-N----EAIDKAEDMDGPTVAWIR 69 (266)
T ss_dssp CEEEEEEECCCCT-------TCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSC-S----GGGGGCEETTSHHHHHHH
T ss_pred ccEEEEEeCCCCc-------CCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCC-h----hHHHhhccCCCHHHHHHH
Confidence 5999999999763 78899999999999999 889999999999999993 2 123345555678999999
Q ss_pred HHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEe
Q 041243 170 ELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNI 249 (406)
Q Consensus 170 ~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~I 249 (406)
++|++++++|++|+.++. ++++||++++|+++|+++ +|+|.||+++ +.|..+|.+|+. .++|+++++|||++|
T Consensus 70 ~~a~~~~~~iv~G~~~~~---~~~~yNs~~~i~~~G~i~-~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~ig~~I 142 (266)
T 2e11_A 70 TQAARLGAAITGSVQLRT---EHGVFNRLLWATPDGALQ-YYDKRHLFRF--GNEHLRYAAGRE-RLCVEWKGWRINPQV 142 (266)
T ss_dssp HHHHHHTSEEEEEEEEEE---TTEEEEEEEEECTTSCEE-EEECSSCCGG--GTTTTTSBCCCS-CCCEEETTEEEEEEE
T ss_pred HHHHHhCCEEEEeeeEcc---CCcEEEEEEEECCCCCEE-EEeeeccCCC--cChhhhccCCCC-ceEEEECCEEEEEEE
Confidence 999999999999999885 678999999999999999 9999999875 368999999996 899999999999999
Q ss_pred ccCCcchHHHHHHH---HC---CCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCC
Q 041243 250 CYGRHHPLNWLAFG---LN---GAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQ 323 (406)
Q Consensus 250 CyD~~~Pe~~~~~~---~~---Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~ 323 (406)
|||++||++++.++ .+ |||+|++|++|... ...+|..++++||+||++|+++||++|.+. ++
T Consensus 143 CyD~~fpe~~r~~~~~~~~~~~ga~~i~~~s~w~~~-~~~~~~~~~~~rA~en~~~vv~an~~G~~~--------~~--- 210 (266)
T 2e11_A 143 CYDLRFPVFCRNRFDVERPGQLDFDLQLFVANWPSA-RAYAWKTLLRARAIENLCFVAAVNRVGVDG--------NQ--- 210 (266)
T ss_dssp GGGGGCTTTTCCCBSSSSTTSBSCSEEEEEECCCGG-GHHHHHHHHHHHHHHTTSEEEEEECEEECT--------TS---
T ss_pred EeccCCHHHHHHHHhhhhccCCCCcEEEEeCCCCCC-chHHHHHHHHHHHHhcCcEEEEEcCCcCCC--------CC---
Confidence 99999999998764 44 99999999998754 345799999999999999999999999852 11
Q ss_pred CCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHH
Q 041243 324 HKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAE 384 (406)
Q Consensus 324 ~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~ 384 (406)
..+.|.|+|++|+|+++++++ .++++++++||++.++.+|..++++.++|+|+|++
T Consensus 211 ----~~~~G~S~ii~p~G~v~~~~~-~~e~~l~~~id~~~~~~~R~~~~~~~~rr~~~y~~ 266 (266)
T 2e11_A 211 ----LHYAGDSAVIDFLGQPQVEIR-EQEQVVTTTISAAALAEHRARFPAMLDGDSFVLGE 266 (266)
T ss_dssp ----CEEEEEEEEECTTSCEEEEEE-SSCEEEEEEECHHHHHHHHHHSCGGGGCCCEEEC-
T ss_pred ----ceEeeeEEEECCCCceeeecC-CCCeEEEEEEcHHHHHHHHHhCChhhhcChhhhcC
Confidence 368999999999999999888 88999999999999999999999999999999853
No 8
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=100.00 E-value=1.6e-49 Score=387.28 Aligned_cols=276 Identities=22% Similarity=0.360 Sum_probs=231.0
Q ss_pred CCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCc---chhHHhhhcCCC-CcH
Q 041243 88 PRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCT---REKRWCEFAEPV-DGE 163 (406)
Q Consensus 88 ~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~---~~~~~~~~ae~~-~~~ 163 (406)
+++||||++|+++.. .+++.+.|++++.++++.|+++|+|||||||++++||.... ....+..+.+.. .++
T Consensus 1 ~~~~~va~~Q~~~~~-----~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~ 75 (303)
T 1uf5_A 1 TRQMILAVGQQGPIA-----RAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGP 75 (303)
T ss_dssp CCEEEEEEEEBCCCC-----TTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCT
T ss_pred CccEEEEEEEecCcc-----cccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCH
Confidence 467999999998752 13789999999999999999999999999999999985311 111112222211 467
Q ss_pred HHHHHHHHHHhcCcEEEeeceeeccCCCC---eeEEEEEEEcCCCcEEEeeeccCCCCCCC------C--CcccceecCC
Q 041243 164 STQFLQELARKYNMVIISPILERDVNHGD---TIWNTAIIIGNHGNIIGKHRKNHIPRVGD------F--NESTYYMEGN 232 (406)
Q Consensus 164 ~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~---~~~Nsavvi~~~G~vl~~y~K~hl~~~g~------f--~E~~~~~~G~ 232 (406)
+++.|+++|++++++|++|+.++.. ++ ++||++++|+++|+++++|+|.|||.+++ | .|..+|.+|+
T Consensus 76 ~~~~l~~~a~~~~~~iv~G~~~~~~--~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~e~~p~~~~~~~E~~~f~~G~ 153 (303)
T 1uf5_A 76 VVRPLFEKAAELGIGFNLGYAELVV--EGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGD 153 (303)
T ss_dssp TTHHHHHHHHHHTCEEEEEEEEEEE--ETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCS
T ss_pred HHHHHHHHHHHhCeEEEEeeeEecC--CCCCcceeeEEEEECCCCCEeeeEeeeecCCcccccccccccccchhhccCCC
Confidence 8999999999999999999988753 33 79999999999999999999999974443 3 6888999998
Q ss_pred CCCceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCC---CCCCC------CcCcHHHHHHHHHHHcCcEEEEE
Q 041243 233 TGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSA---TVGEL------SEPMWPIEARNAAIANSYFVGSI 303 (406)
Q Consensus 233 ~~~~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa---~~~~~------~~~~w~~~~r~rAien~~~vv~a 303 (406)
...++|+++++|||++||||++||++++.++.+|||+|++|++ +.... ...+|..++++||+||++|+++|
T Consensus 154 ~~~~v~~~~~~~ig~~ICyD~~fpe~~r~l~~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 233 (303)
T 1uf5_A 154 LGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAA 233 (303)
T ss_dssp SCSCEEEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEecCCceEEEEEecCccCHHHHHHHHHCCCCEEEEecCCccccccccCCccccHHHHHHHHHhhhhcCCcEEEEE
Confidence 3489999999999999999999999999999999999976655 33332 34568889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhh-cCCCccCchHHH
Q 041243 304 NRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDK-WGFRMTARYELY 382 (406)
Q Consensus 304 N~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~-~~~~~~~r~dlY 382 (406)
|++|.+. | ..|+|+|+|++|+|+++++++..++++++++||++.++.+|.. ++++.++|+|+|
T Consensus 234 n~~G~~~---------~-------~~~~G~S~ii~p~G~vl~~~~~~~~~~l~~~id~~~~~~~R~~~~~~~~~rr~~~y 297 (303)
T 1uf5_A 234 GKAGMEE---------N-------CMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHY 297 (303)
T ss_dssp EBCEEET---------T-------EEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHHHTTTTCHHHHCCGGGC
T ss_pred CcccccC---------C-------ccccceeEEECCCCCEeccCCCCCCcEEEEEEcHHHHHHHHhhcccchhccCHHHH
Confidence 9999852 2 4689999999999999999887788999999999999999999 999999999999
Q ss_pred HHHH
Q 041243 383 AEML 386 (406)
Q Consensus 383 ~~~~ 386 (406)
..++
T Consensus 298 ~~~~ 301 (303)
T 1uf5_A 298 GLIA 301 (303)
T ss_dssp GGGG
T ss_pred HHhh
Confidence 7543
No 9
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=100.00 E-value=6.9e-46 Score=367.73 Aligned_cols=259 Identities=21% Similarity=0.245 Sum_probs=222.7
Q ss_pred CccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhh--CCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHH
Q 041243 89 RVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGV--SGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQ 166 (406)
Q Consensus 89 ~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~--~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~ 166 (406)
..||||++|+++... +..++.++|++++.++++.|++ .|+|||||||++++||.+... .+.++++...+++++
T Consensus 12 ~~~~Va~vQ~~i~~~---~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~~~--~~~~~a~~~~~~~~~ 86 (334)
T 2dyu_A 12 EGFLVAAIQFPVPIV---NSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKW--LSEEFLLDVPGKETE 86 (334)
T ss_dssp -CEEEEEECCBCCCC---CSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTTT--TSGGGCBCSSSHHHH
T ss_pred CccEEEEEecCCccC---CchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCChh--HHHHhhccCCCHHHH
Confidence 479999999997531 2257999999999999999987 799999999999999865321 244566666688999
Q ss_pred HHHHHHHhcCcEEEeeceeeccCCCCe--eEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCC-c
Q 041243 167 FLQELARKYNMVIISPILERDVNHGDT--IWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAF-G 243 (406)
Q Consensus 167 ~l~~lAkk~~i~Iv~G~~e~~~~~~~~--~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~-g 243 (406)
.|+++|++++++|++|+.++.. ++. +||++++|+++|+++++|+|.|++ .|..+|.+|+...++|++.. .
T Consensus 87 ~l~~~a~~~~i~iv~G~~e~~~--~~~~~~yNsa~vi~p~G~i~~~YrK~hlf-----~e~~~f~~G~~~~~v~~~~~g~ 159 (334)
T 2dyu_A 87 LYAKACKEAKVYGVFSIMERNP--DSNKNPYNTAIIIDPQGEIILKYRKLFPW-----NPIEPWYPGDLGMPVCEGPGGS 159 (334)
T ss_dssp HHHHHHHHHTCEEEEEEEECCS--STTSCCEEEEEEECTTSCEEEEEECSSCC-----TTTCCCCCCCSCCCCEECGGGC
T ss_pred HHHHHHHHhCeEEEEeeEEECC--CCCceeEEEEEEECCCCCEEEEEeeccCC-----CCcccCcCCCCCceeEECCCCC
Confidence 9999999999999999998753 233 999999999999999999999975 36678999997556999954 5
Q ss_pred eEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCC
Q 041243 244 KIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQ 323 (406)
Q Consensus 244 kigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~ 323 (406)
|||++||||++||++++.++.+|||+|++|++|... ...+|..++++||+||++|+++||++|.+. +
T Consensus 160 ~iG~~ICyD~~fpe~~r~~~~~Gadlil~psaw~~~-~~~~~~~~~~arA~En~~~vv~an~~G~~~---------~--- 226 (334)
T 2dyu_A 160 KLAVCICHDGMIPELAREAAYKGCNVYIRISGYSTQ-VNDQWILTNRSNAWHNLMYTVSVNLAGYDN---------V--- 226 (334)
T ss_dssp EEEEEEGGGGGCHHHHHHHHHTTCSEEEEEESSCTT-SHHHHHHHHHHHHHHHTCEEEEEECSBSSS---------S---
T ss_pred EEEEEEECCCCchHHHHHHHHcCCCEEEEeCCCCCC-cHHHHHHHHHHHHHhCCCEEEEECCCcCCC---------C---
Confidence 999999999999999999999999999999998644 346899999999999999999999999852 1
Q ss_pred CCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCcc
Q 041243 324 HKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMT 376 (406)
Q Consensus 324 ~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~ 376 (406)
..|+|.|+|++|+|+++++++..++++++++||++.++.+|..|++..+
T Consensus 227 ----~~~~G~S~Iidp~G~vla~~~~~~e~il~a~idl~~~~~~R~~~~~~~~ 275 (334)
T 2dyu_A 227 ----FYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENN 275 (334)
T ss_dssp ----CCCCCEEEEECTTSCEEEECCCCTTCEEEEEECHHHHHHHHHHCSTTCH
T ss_pred ----eeeeeEEEEECCCCCEeeecCCCCCeEEEEEEcHHHHHHHHhhCchhhh
Confidence 4689999999999999999887789999999999999999999987543
No 10
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=100.00 E-value=5.5e-46 Score=369.45 Aligned_cols=272 Identities=20% Similarity=0.223 Sum_probs=231.0
Q ss_pred CCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhh--CCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHH
Q 041243 88 PRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGV--SGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGEST 165 (406)
Q Consensus 88 ~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~--~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~ 165 (406)
..+||||++|+++... +..++.+.|++++.++++.|++ .|+|||||||++++||.+.. ..+.++++...++++
T Consensus 10 ~~~~kValvQ~~i~~~---~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~--~~~~~~a~~~~~~~~ 84 (341)
T 2uxy_A 10 NDTVGVAVVNYKMPRL---HTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDP--AEMMETAVAIPGEET 84 (341)
T ss_dssp TTEEEEEEECCBCCBC---CSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCSH--HHHHHHCBCSSSHHH
T ss_pred CCccEEEEEECCcccC---CCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCCH--HHHHHHhccCCCHHH
Confidence 3579999999997531 2258999999999999999987 79999999999999985432 234567777778999
Q ss_pred HHHHHHHHhcCcEEEeece-eeccCC-CCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCC-
Q 041243 166 QFLQELARKYNMVIISPIL-ERDVNH-GDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAF- 242 (406)
Q Consensus 166 ~~l~~lAkk~~i~Iv~G~~-e~~~~~-~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~- 242 (406)
+.|+++|+++++++++|+. ++.... ++.+||++++|+++|+++++|+|.||+ .|..+|.+|+. ..+|++++
T Consensus 85 ~~l~~~a~~~~i~iv~G~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hlf-----~e~~~f~pG~~-~~v~~~~~G 158 (341)
T 2uxy_A 85 EIFSRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPW-----CPIEGWYPGGQ-TYVSEGPKG 158 (341)
T ss_dssp HHHHHHHHHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCC-----TTTCCCBCCCC-CCCEECGGG
T ss_pred HHHHHHHHHhCcEEEEEeeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeeccC-----CCccceeCCCC-ceEEECCCC
Confidence 9999999999999999998 765321 245999999999999999999999984 36678999997 68999954
Q ss_pred ceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCC
Q 041243 243 GKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKP 322 (406)
Q Consensus 243 gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~ 322 (406)
.|||++||||++||++++.++.+|||+|++|++|... ...+|..++++||+||++|+++||++|.+. +
T Consensus 159 ~riG~~ICyD~~fpe~~r~l~~~Gadlll~psa~~~~-~~~~~~~l~~arA~En~~~vv~an~~G~~~---------~-- 226 (341)
T 2uxy_A 159 MKISLIIXDDGNYPEIWRDCAMKGAELIVRCQGYMYP-AKDQQVMMAKAMAWANNCYVAVANAAGFDG---------V-- 226 (341)
T ss_dssp CEEEEEEGGGGGSHHHHHHHHHTTCSEEEEEECCBTT-CHHHHHHHHHHHHHHHTCEEEEEECEEECS---------S--
T ss_pred CEEEEEEccCCcCcHHHHHHHHcCCCEEEEcCCCCCC-cHHHHHHHHHHHHHhCCcEEEEECCCCCCC---------C--
Confidence 5999999999999999999999999999999998643 457899999999999999999999999752 1
Q ss_pred CCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHhcccC
Q 041243 323 QHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSK 391 (406)
Q Consensus 323 ~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~~~~~ 391 (406)
..|+|.|+|++|+|+++++++..++++++++||++.++..|..|++. .++|...+..|+.
T Consensus 227 -----~~~~G~S~Iidp~G~vla~~~~~~e~il~a~id~~~~~~~R~~~~~~----~~~~~l~~rdY~~ 286 (341)
T 2uxy_A 227 -----YSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARANDQSQ----NHLFKILHRGYSG 286 (341)
T ss_dssp -----CEEECCCEEECTTSCEEEECCSCTTCEEEEEEEHHHHHHHHHHCCTT----CHHHHTTSBTHHH
T ss_pred -----ceeeeEEEEECCCCCEEEECCCCCCEEEEEEEcHHHHHHHHhhcchh----hhHHhhhccccce
Confidence 57999999999999999998878899999999999999999998873 5577644455543
No 11
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=100.00 E-value=5e-47 Score=388.74 Aligned_cols=269 Identities=23% Similarity=0.267 Sum_probs=231.0
Q ss_pred CccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHH
Q 041243 89 RVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFL 168 (406)
Q Consensus 89 ~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l 168 (406)
++||||++|.++. .+.+.|++++.++++.|+++|+|||||||++++||.. . ..+..+++...+++++.|
T Consensus 13 ~~~kVa~vQ~~~~--------~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~-~--~~~~~~a~~~~~~~~~~l 81 (440)
T 1ems_A 13 GRHFIAVCQMTSD--------NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLN-K--NEQIDLAMATDCEYMEKY 81 (440)
T ss_dssp SEEEEEEECBCCC--------SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSS-H--HHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCC--------CCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcc-h--hHHHHhhccCCCHHHHHH
Confidence 5799999999864 5789999999999999999999999999999987742 1 122233443446789999
Q ss_pred HHHHHhcCcEEEeecee---eccCCCCeeEEEEEEEcCCCcEEEeeeccCCCC-----CCCCCcccceecCCCCCce-EE
Q 041243 169 QELARKYNMVIISPILE---RDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPR-----VGDFNESTYYMEGNTGHPV-FE 239 (406)
Q Consensus 169 ~~lAkk~~i~Iv~G~~e---~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~-----~g~f~E~~~~~~G~~~~~v-f~ 239 (406)
+++|++++++|++|++. +.. ++++||++++|+++|+++++|+|.||++ ...|.|+.+|.+|+. ..+ |+
T Consensus 82 ~~~A~~~~i~iv~G~~~~~e~~~--~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~P~~~~~~E~~~f~~G~~-~~~~~~ 158 (440)
T 1ems_A 82 RELARKHNIWLSLGGLHHKDPSD--AAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTE-MIPPVD 158 (440)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTE--EEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCS-CCCCEE
T ss_pred HHHHHHcCeEEEeccccccccCC--CCcEEEEEEEECCCCcEEEEEeeeeecCccCCCCCcccccccccCCCC-CceeEE
Confidence 99999999999999654 321 4689999999999999999999999953 224578999999997 566 99
Q ss_pred cCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCC
Q 041243 240 TAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGD 319 (406)
Q Consensus 240 t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~ 319 (406)
++++|||++||||.+||++++.++.+|||+|++|++|....+..+|..++++||+||++|+++||++|.+. +
T Consensus 159 ~~~~~iG~~ICyD~~fpe~~r~l~~~Ga~il~~psa~~~~~~~~~~~~~~~arA~En~~~vv~an~~G~~~--------~ 230 (440)
T 1ems_A 159 TPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHN--------P 230 (440)
T ss_dssp ETTEEECCCCGGGGGCHHHHHHHHHTTCSEEECCBCCCHHHHHHHHHHHHHHHHHHHTCEEEECBBEEEEE--------T
T ss_pred CCCeeEEEEEeccccChHHHHHHHHcCCcEEEECCcCCCCCcHHHHHHHHHHHHHhcCcEEEEecccccCC--------C
Confidence 99999999999999999999999999999999999986544456899999999999999999999999752 1
Q ss_pred CCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHh
Q 041243 320 GKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLA 387 (406)
Q Consensus 320 G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~ 387 (406)
+ ..|+|.|+|++|+|+++++++ .++++++++||++.++.+|..+++..++|+|+|.....
T Consensus 231 ~-------~~~~G~S~ii~P~G~vla~~~-~~e~il~a~idl~~~~~~R~~~~~~~~rr~~~y~~~~~ 290 (440)
T 1ems_A 231 K-------RQSYGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLSYVDTLREMQPVFSHRRSDLYTLHIN 290 (440)
T ss_dssp T-------EEEECCCEEECTTSCEEEECC-SSSCEEEEEEEHHHHHHHHHHSCGGGSCCTTTCCCCCC
T ss_pred C-------ceeeeeeEEECCCCCeeccCC-CCCcEEEEEeCHHHHHHHHHhCChhhhcChhhhhcccc
Confidence 1 468999999999999999887 58899999999999999999999999999999975443
No 12
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=100.00 E-value=4.3e-42 Score=364.18 Aligned_cols=247 Identities=19% Similarity=0.242 Sum_probs=215.5
Q ss_pred CCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHH
Q 041243 88 PRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQF 167 (406)
Q Consensus 88 ~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~ 167 (406)
+++||||++|+++. .+|.+.|++++.++++.|+++|+|||||||++++||...... ...++ .++..+.
T Consensus 2 ~~~~rvA~~Q~~~~-------~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~dl~-~~~~~----~~~~~~~ 69 (590)
T 3n05_A 2 SLQLRLALNQIDST-------VGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLA-LRSSF----VEASRTA 69 (590)
T ss_dssp CEEEEEEEEECCCC-------TTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGGGG-GCHHH----HHHHHHH
T ss_pred CCccEEEEEeCCCC-------CCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHHHh-hCHHH----HHHHHHH
Confidence 46799999999865 489999999999999999999999999999999999642110 00011 1467889
Q ss_pred HHHHHHhc--C----cEEEeeceeeccCCC-------CeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCC
Q 041243 168 LQELARKY--N----MVIISPILERDVNHG-------DTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTG 234 (406)
Q Consensus 168 l~~lAkk~--~----i~Iv~G~~e~~~~~~-------~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~ 234 (406)
|+++|+++ + ++|++|++++....+ +++||++++|+ +|++++.|+|+|||+++.|.|..||.+|+.
T Consensus 70 l~~la~~~~~~~~~~i~ivvG~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~~L~~~~~f~E~r~f~~G~~- 147 (590)
T 3n05_A 70 LRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGVFDEFRYFVPGDT- 147 (590)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEEEEECSSCBTTTTBCTTCEEEEEEEEE-TTEEEEEEECCCCCSSSSCCHHHHCCCCCE-
T ss_pred HHHHHHhhhhccCCceEEEEeeEEEEcCcccccccccCCeeEEEEEEe-CCEEEEEEeCccCCCCCccCccccccCCCc-
Confidence 99999998 6 999999988763211 37999999998 999999999999999999999999999996
Q ss_pred CceEEcCCceEEEEeccCCcc-hHHHHHHHHCCCcEEEEcCCCCCCCC-cCcHHHHHHHHHHHcCcEEEEECCCCCCCCC
Q 041243 235 HPVFETAFGKIAVNICYGRHH-PLNWLAFGLNGAEIVFNPSATVGELS-EPMWPIEARNAAIANSYFVGSINRVGTEVFP 312 (406)
Q Consensus 235 ~~vf~t~~gkigv~ICyD~~~-Pe~~~~~~~~Gadii~~Psa~~~~~~-~~~w~~~~r~rAien~~~vv~aN~~G~~~~~ 312 (406)
..+|+++++|||+.||||+|| |++++.++.+|||||++|++|....+ ...|..++++||+||++|+++||++|.+.
T Consensus 148 ~~v~~~~g~~iG~~IC~D~~f~pe~~~~la~~Ga~ii~~psa~p~~~gk~~~~~~l~~~rA~e~~~~vv~an~~G~~~-- 225 (590)
T 3n05_A 148 MPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQD-- 225 (590)
T ss_dssp EEEEEETTEEEEEEEGGGGGSTTSHHHHHHHTTCSEEEEEECCBCCCCSSCHHHHHHHHHHHHHTSEEEEEECEEEET--
T ss_pred ceEEEECCEEEEEEeehhhccCChHHHHHHHcCCCEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEecccCCC--
Confidence 899999999999999999999 89999999999999999999876544 46788999999999999999999999752
Q ss_pred CCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHH
Q 041243 313 NPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLC 364 (406)
Q Consensus 313 ~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~ 364 (406)
+ ..|+|.|+|++|+|+++++++.+++++++++||++.+
T Consensus 226 -------~-------~~f~G~S~iidp~G~vla~~~~~~e~~~~~didl~~~ 263 (590)
T 3n05_A 226 -------E-------LVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAA 263 (590)
T ss_dssp -------T-------EEEEBCCEEECTTSCEEEECCBTSCEEEEEEEEECCC
T ss_pred -------C-------eEEeCcEEEECCCCcEEEEcCCCCCcEEEEEEccccc
Confidence 1 5899999999999999999988899999999998876
No 13
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=100.00 E-value=4.8e-42 Score=361.45 Aligned_cols=280 Identities=19% Similarity=0.189 Sum_probs=222.6
Q ss_pred CccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHH
Q 041243 89 RVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFL 168 (406)
Q Consensus 89 ~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l 168 (406)
.+||||++|++.. .+|.+.|++++.++++.|+++|||||||||+|++||.... ......+. ....+.+
T Consensus 5 MkmKIAlaQln~~-------vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~D-l~~~~~~~----~~~~~~l 72 (565)
T 4f4h_A 5 MKTRIALAQLNVT-------VGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPED-LLLRPAFY----AASDAAL 72 (565)
T ss_dssp -CEEEEEEECCCC-------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGG-GGGCHHHH----HHHHHHH
T ss_pred cceEEEEEECCCC-------cccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHH-hhhCHHHH----HHHHHHH
Confidence 4699999999854 4899999999999999999999999999999999995321 10001111 1222333
Q ss_pred HHHH----HhcCcEEEeeceeeccC-------------CCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecC
Q 041243 169 QELA----RKYNMVIISPILERDVN-------------HGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEG 231 (406)
Q Consensus 169 ~~lA----kk~~i~Iv~G~~e~~~~-------------~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G 231 (406)
.+++ +..++.|++|++++... .++++||++++|. +|++++.|+|.|||.++.|.|+.||.+|
T Consensus 73 ~~la~~~~~~~~i~ivvG~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~hLp~~~~f~E~r~f~~G 151 (565)
T 4f4h_A 73 AELAAQLKPFAGLAVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIV-GGEVAGTYRKQDLPNTEVFDEKRYFATD 151 (565)
T ss_dssp HHHHHHHTTSTTCEEEEEEEEECC-----CCCCCCTTSCCCSEEEEEEEEE-TTEEEEEEECCSCCCSTTCCGGGTCCCC
T ss_pred HHHHHHhhhcCCcEEEEeeeeeecccccccccceecccCCCceEEEEEEEE-CCEEEEEEeeeecCCCcccceeccccCC
Confidence 3333 33689999998765421 1346999999996 7999999999999999999999999999
Q ss_pred CCCCceEEcCCceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCc-CcHHHHHHHHHHHcCcEEEEECCCCCCC
Q 041243 232 NTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSE-PMWPIEARNAAIANSYFVGSINRVGTEV 310 (406)
Q Consensus 232 ~~~~~vf~t~~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~-~~w~~~~r~rAien~~~vv~aN~~G~~~ 310 (406)
+. ..+|+++++|||+.||||+|||+..+.++.+||++|++|+++....+. ..|..+.++||++|+++++++|++|.+.
T Consensus 152 ~~-~~v~~~~g~~iGv~IC~Dlwfpe~~r~la~~GA~ii~~psAs~~~~gk~~~r~~ll~arA~e~~~~vvy~N~vG~~~ 230 (565)
T 4f4h_A 152 AA-PYVFELNGVKFGVVICEDVWHASAAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRETGLPMVYVNLVGGQD 230 (565)
T ss_dssp CC-CCEEEETTEEEEECCGGGGGSSHHHHHHHHTTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHHCCCEEEEECEEEET
T ss_pred Cc-ceeEEecCcEEEEEEeehhcccchhHHHHhCCCeeeecccccccccCcHHHHHHHHHHHHHHhCCcEEEeeeecCCC
Confidence 97 899999999999999999999999999999999999999999877664 6788999999999999999999999862
Q ss_pred CCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHH---Hh
Q 041243 311 FPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEM---LA 387 (406)
Q Consensus 311 ~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~---~~ 387 (406)
+ ..|+|+|+|++|+|+++++++.++++++++++|..... ........+...++|..+ +.
T Consensus 231 ---------~-------~~f~G~S~iidp~G~vla~~~~f~e~~~~~d~d~~~~~--~~~~~~~~~~~~~~~~a~~~gl~ 292 (565)
T 4f4h_A 231 ---------E-------LVFDGGSFVLDGAGELVAKMPQFEEGNAIVEFDGARAL--PAAIAPALSVEAQVYRALVLGVR 292 (565)
T ss_dssp ---------T-------EEEEBCCEEECTTSCEEEECCBSCCEEEEEEEETTEEC--CCCBCCCCCHHHHHHHHHHHHHH
T ss_pred ---------C-------eEEECCcceecCCCcEEEEccccccceEEEEecccccc--ccccccCcchHHHHHHHHHHHHH
Confidence 2 68999999999999999999999999999999865321 111112223344666533 47
Q ss_pred cccCCCCCCcccc
Q 041243 388 NYSKADYEPQVIS 400 (406)
Q Consensus 388 ~~~~~~~~~~~~~ 400 (406)
+|+++...+.+|.
T Consensus 293 dy~~k~g~~~~vl 305 (565)
T 4f4h_A 293 DYIGKNGFPGAII 305 (565)
T ss_dssp HHHHHTTCCCEEE
T ss_pred HHHHHcCCCcEEE
Confidence 7777666666553
No 14
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=7.9e-42 Score=364.49 Aligned_cols=279 Identities=15% Similarity=0.176 Sum_probs=212.7
Q ss_pred CccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHH
Q 041243 89 RVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFL 168 (406)
Q Consensus 89 ~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l 168 (406)
++||||++|+++. .+|.+.|++++.++++.|+++|+|||||||++++||.... .+ +++...++..+.|
T Consensus 4 ~~~rVA~~Q~~~~-------~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~d---l~--~~~~~~~~~~~~l 71 (634)
T 3ilv_A 4 STIRIGGAAVNQT-------PIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCED---LF--LTDWVAETAIEYC 71 (634)
T ss_dssp CEEEEEEEEECCC-------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGG---GG--GSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCC-------CCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHH---Hh--hChhhhHHHHHHH
Confidence 3699999999976 3789999999999999999999999999999999996321 11 1222235678999
Q ss_pred HHHHHhc-CcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCC-------------
Q 041243 169 QELARKY-NMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTG------------- 234 (406)
Q Consensus 169 ~~lAkk~-~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~------------- 234 (406)
+++|+++ +++|++|++++. ++++||++++| ++|++++.|+|.|||+++.|.|..||.+|+..
T Consensus 72 ~~la~~~~~i~ivvG~p~~~---~~~lyNsa~vi-~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~~~~~~~~g~~~p 147 (634)
T 3ilv_A 72 FEIAASCTDITVSLGLPMRI---AGITYNCVCLV-ENGIVKGFSAKQFLANEGVHYETRWFTAWPRNHTTTFLYNDVKYP 147 (634)
T ss_dssp HHHHTTCTTSEEEEEEEEEE---TTEEEEEEEEE-ETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTCEEEEEETTEEEE
T ss_pred HHHHHhCCCCEEEEeeeEee---CCCccEEEEEE-ECCeEEEEEcCEeCCCCCCcChhhhcCCCCccccceecccCcccc
Confidence 9999996 999999999886 67999999999 79999999999999999999999999999862
Q ss_pred --CceEEcCCceEEEEeccCCcchH-HHHHHHHCCCcEEEEcCCCCCCCCc-CcHHHHHHHHHHHcCcEEEEECCCCCCC
Q 041243 235 --HPVFETAFGKIAVNICYGRHHPL-NWLAFGLNGAEIVFNPSATVGELSE-PMWPIEARNAAIANSYFVGSINRVGTEV 310 (406)
Q Consensus 235 --~~vf~t~~gkigv~ICyD~~~Pe-~~~~~~~~Gadii~~Psa~~~~~~~-~~w~~~~r~rAien~~~vv~aN~~G~~~ 310 (406)
..+|+++++|||+.||||+|||+ +++.++.+|||+|+||++|....+. ..|..++++||+||+++++++|++|.+.
T Consensus 148 ~g~~vf~~~g~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~ 227 (634)
T 3ilv_A 148 FGDVLYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEA 227 (634)
T ss_dssp EESCCEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESS
T ss_pred cCCeEEEECCEEEEEEEeccccCChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCC
Confidence 16899999999999999999998 8999999999999999998765543 5889999999999999999999999862
Q ss_pred CCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCC---CceEEEEEeehhHHHHHHhhcCCCcc-CchHHHHH--
Q 041243 311 FPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRF---RDGLLISDMDLNLCRQLKDKWGFRMT-ARYELYAE-- 384 (406)
Q Consensus 311 ~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~---~e~llvaeidl~~~~~~r~~~~~~~~-~r~dlY~~-- 384 (406)
+ -..|.|+|.|+ |+|+++++++.+ ++++++++||++.++..|.+|+.... ..-++|..
T Consensus 228 --------~-------~~~f~G~S~I~-p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~ 291 (634)
T 3ilv_A 228 --------G-------RMIYDGEVLIA-HKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVLTQDDLEKEFEFWEATS 291 (634)
T ss_dssp --------S-------SCEEECCEEEE-ETTEEEEECCSSCSSSEEEEEEEEEC--------------CCHHHHHHHHHH
T ss_pred --------C-------ceEEcceEEEE-cCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhcCCCCCCCcHHHHHHHHH
Confidence 1 15789999877 999999998864 45899999999999998887754332 23345543
Q ss_pred -HHhcccCCCCCCccc
Q 041243 385 -MLANYSKADYEPQVI 399 (406)
Q Consensus 385 -~~~~~~~~~~~~~~~ 399 (406)
.+.+|++......+|
T Consensus 292 ~~l~d~~~~~g~~~vv 307 (634)
T 3ilv_A 292 LGLFDYMRKSRSKGFV 307 (634)
T ss_dssp HHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHhCCCeEE
Confidence 345666555555544
No 15
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=100.00 E-value=4.4e-40 Score=353.02 Aligned_cols=263 Identities=17% Similarity=0.150 Sum_probs=219.0
Q ss_pred CCccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHH
Q 041243 88 PRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQF 167 (406)
Q Consensus 88 ~~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~ 167 (406)
.+.||||++|+++. .+|.+.|++++.++++.|+++|+|||||||++++||...... ....+.+. ..+.++.
T Consensus 10 ~g~~rVAl~Q~~~~-------~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~-~~~~~~~~-~~~~l~~ 80 (680)
T 3sdb_A 10 HGFVRVAACTHHTT-------IGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVL-LQDSLLDA-VEDALLD 80 (680)
T ss_dssp GTEEEEEEEECCCC-------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGGGG-GCHHHHHH-HHHHHHH
T ss_pred CCCeEEEEEcCCCC-------CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHh-hCHHHHHh-hHHHHHH
Confidence 47899999999976 378999999999999999999999999999999999632110 00112111 1468899
Q ss_pred HHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCC------------
Q 041243 168 LQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGH------------ 235 (406)
Q Consensus 168 l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~------------ 235 (406)
|+++|++++++|++|++++. ++++||++++|+ +|++++.|+|+|||+++.|.|..+|.+|+...
T Consensus 81 l~~~a~~~~i~ivvG~p~~~---~~~lyNsa~vi~-~G~il~~y~K~hL~~~~~f~E~r~F~~G~~~~~~i~~~g~~vpf 156 (680)
T 3sdb_A 81 LVTESADLLPVLVVGAPLRH---RHRIYNTAVVIH-RGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVAF 156 (680)
T ss_dssp HHHHHTTCSSEEEEEEEEEE---TTEEEEEEEEEE-TTEEEEEEECSCCCEETTEEGGGTEECCTTCCSEEEETTEEEEB
T ss_pred HHHHhhcCCcEEEEeceEEe---CCCceEEEEEEe-CCCEEEEEeeecCCCCCccChhhhcCCCCCCCceeeecCccccc
Confidence 99999999999999999886 679999999998 99999999999999999999999999998631
Q ss_pred ---ceE---EcCCceEEEEeccCCcchHHH-HHHHHCCCcEEEEcCCCCCCCCcC-cHHHHHHHHHHH-cCcEEEEECCC
Q 041243 236 ---PVF---ETAFGKIAVNICYGRHHPLNW-LAFGLNGAEIVFNPSATVGELSEP-MWPIEARNAAIA-NSYFVGSINRV 306 (406)
Q Consensus 236 ---~vf---~t~~gkigv~ICyD~~~Pe~~-~~~~~~Gadii~~Psa~~~~~~~~-~w~~~~r~rAie-n~~~vv~aN~~ 306 (406)
.+| +++++|||+.||||+|||+.. +.++.+|||||+||++|....+.. .|..+.+.+|.+ +.+||+++|+.
T Consensus 157 g~~~vf~~~~~~g~riGv~IC~Dl~fPe~~~r~la~~GAdiil~pSasp~~~gk~~~r~~l~~~~aar~~~~yV~a~~~~ 236 (680)
T 3sdb_A 157 GTDLLFAASDLPGFVLHVEIAEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGE 236 (680)
T ss_dssp SSCEEEEETTCTTCEEEEEEGGGGGSSSCHHHHHHHHTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCCT
T ss_pred CCceeEeeeccCCeEEEEEEeccccccccHHHHHHhcCCeEEEEecCCccccCcHHHHHHHHHHHHHHhCCcEEEEECCc
Confidence 156 689999999999999999985 899999999999999988766554 445677777666 46666766667
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccceeeEEECCCCCeeccCCCC--CceEEEEEeehhHHHHHHhhcCCCccCch
Q 041243 307 GTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRF--RDGLLISDMDLNLCRQLKDKWGFRMTARY 379 (406)
Q Consensus 307 G~~~~~~~~~~~~G~~~~~~~~~~~G~S~Ii~P~G~i~~~~~~~--~e~llvaeidl~~~~~~r~~~~~~~~~r~ 379 (406)
|.+. + -..|+|+|+|+ |+|+++++++.+ ++++++++||++.+++.|.+++++.++|.
T Consensus 237 G~~~--------~-------~l~f~G~S~I~-p~G~vla~~~~f~~~e~ll~adiDl~~l~~~R~~~~~~~~~~~ 295 (680)
T 3sdb_A 237 GEST--------T-------DLAWDGQTMIW-ENGALLAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNRR 295 (680)
T ss_dssp TSCC--------S-------SCCCCCCEEEE-ETTEEEEECCSSCSSCEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred ccCC--------C-------CeEEeccEEEE-cCCEEEEECCCCCCCCcEEEEEEcHHHHHHHHHhCCchhhhhh
Confidence 7631 1 15789999999 999999998876 89999999999999999999998877664
No 16
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=82.25 E-value=3 Score=38.94 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=46.2
Q ss_pred HHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
..+..+.+|+|+|+.|=.|..++. ..+...++..|.+++++++..-...... +...+=.+.||
T Consensus 173 ~~r~l~~~Ga~li~~ps~~~~~~~----------------~~~~~~~~~rA~en~~~vv~~n~~G~~~-~~~~~G~S~ii 235 (283)
T 3hkx_A 173 MVRAAAARGAQLVLVPTALAGDET----------------SVPGILLPARAVENGITLAYANHCGPEG-GLVFDGGSVVV 235 (283)
T ss_dssp HHHHHHHTTCSEEEEECCCBSCCT----------------HHHHTHHHHHHHHHTCEEEEECBEEEET-TEEEECCCEEE
T ss_pred HHHHHHHCCCCEEEECCCCCCccc----------------HHHHHHHHHHHHHhCCEEEEEccccCCC-CeEEeeEEEEE
Confidence 344445789999999987654331 1234567778999999988643222210 22333457889
Q ss_pred cCCCcEEEe
Q 041243 202 GNHGNIIGK 210 (406)
Q Consensus 202 ~~~G~vl~~ 210 (406)
+|+|+++..
T Consensus 236 ~p~G~vl~~ 244 (283)
T 3hkx_A 236 GPAGQPLGE 244 (283)
T ss_dssp CTTSCEEEE
T ss_pred CCCCCEEEe
Confidence 999998764
No 17
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=77.67 E-value=4.1 Score=37.99 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=45.0
Q ss_pred HHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcC
Q 041243 124 DAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGN 203 (406)
Q Consensus 124 ~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~ 203 (406)
+..+.+|+|||+.|=.|... .. ..+...++..|.+++++++..-..... .+..++=.+.+++|
T Consensus 176 r~~~~~Gadli~~psa~~~~-----~~-----------~~~~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p 238 (281)
T 3p8k_A 176 RYPARSGAKIAFYVAQWPMS-----RL-----------QHWHSLLKARAIENNMFVIGTNSTGFD-GNTEYAGHSIVINP 238 (281)
T ss_dssp HHHHHTTCCEEEEEECCBGG-----GH-----------HHHHHHHHHHHHHHTSEEEEEECEEEC-SSCEEECCCEEECT
T ss_pred HHHHHCCCCEEEECCCCCCc-----cH-----------HHHHHHHHHHHHHcCCEEEEEccCcCC-CCcEEeeeEEEECC
Confidence 34456899999999765321 01 124456778899999999864322221 13345556789999
Q ss_pred CCcEEEe
Q 041243 204 HGNIIGK 210 (406)
Q Consensus 204 ~G~vl~~ 210 (406)
+|+++..
T Consensus 239 ~G~vl~~ 245 (281)
T 3p8k_A 239 NGDLVGE 245 (281)
T ss_dssp TSCEEEE
T ss_pred CCCEEEe
Confidence 9998764
No 18
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=76.59 E-value=4.4 Score=37.17 Aligned_cols=68 Identities=9% Similarity=0.168 Sum_probs=43.7
Q ss_pred HHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEc
Q 041243 123 IDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIG 202 (406)
Q Consensus 123 i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~ 202 (406)
.+..+.+|+|+|+.|=.|..+ .+...++..|.+++++++..-...... +...+=.+.+++
T Consensus 155 ~r~~~~~ga~li~~ps~~~~~-------------------~~~~~~~~rA~en~~~vv~~n~~G~~~-~~~~~G~S~ii~ 214 (262)
T 3ivz_A 155 ARTLALKGADVIAHPANLVMP-------------------YAPRAMPIRALENKVYTVTADRVGEER-GLKFIGKSLIAS 214 (262)
T ss_dssp HHHHHHTTCSEEEEEECCCSS-------------------CHHHHHHHHHHHHTCEEEEEECCSEET-TEECCCCCEEEC
T ss_pred HHHHHHCCCCEEEEcCCCCch-------------------HHHHHHHHHHHhcCcEEEEECCCCcCC-CceEeeeEEEEC
Confidence 344456899999999876432 134556788899999988643221110 112334478899
Q ss_pred CCCcEEEe
Q 041243 203 NHGNIIGK 210 (406)
Q Consensus 203 ~~G~vl~~ 210 (406)
|+|+++..
T Consensus 215 p~G~il~~ 222 (262)
T 3ivz_A 215 PKAEVLSM 222 (262)
T ss_dssp TTSCEEEE
T ss_pred CCCCEeec
Confidence 99998764
No 19
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=75.74 E-value=3.7 Score=38.23 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=44.1
Q ss_pred HHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcC
Q 041243 124 DAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGN 203 (406)
Q Consensus 124 ~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~ 203 (406)
+....+|+|+|+.|=.|.. .+.. ..+...++..|.+++++++..-.......+...+=.+.+|+|
T Consensus 179 r~l~~~Ga~ll~~ps~~~~----~~~~-----------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p 243 (291)
T 1f89_A 179 MLSARKGAFAMIYPSAFNT----VTGP-----------LHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVDP 243 (291)
T ss_dssp HHHHHTTEEEEEEECCCBT----THHH-----------HHHHHHHHHHHHHHTSEEEEECCCCCTTSSSCBCCCCEEECT
T ss_pred HHHHhhCCCEEEECCcCCC----CCcH-----------HHHHHHHHHHHHHcCCEEEEecCccCCCCCCeeeeEEEEECC
Confidence 3345679999999954321 1101 124556778889999998865332211112344556789999
Q ss_pred CCcEEEe
Q 041243 204 HGNIIGK 210 (406)
Q Consensus 204 ~G~vl~~ 210 (406)
+|+++..
T Consensus 244 ~G~vl~~ 250 (291)
T 1f89_A 244 RGKIVAE 250 (291)
T ss_dssp TSCEEEE
T ss_pred CCCEEEe
Confidence 9998763
No 20
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=74.54 E-value=4.2 Score=37.56 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=43.8
Q ss_pred HHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcC
Q 041243 124 DAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGN 203 (406)
Q Consensus 124 ~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~ 203 (406)
+....+|+|+|+.|=.|... +.. ..+...++..|.+++++++..-.......+...+=.+.+++|
T Consensus 163 r~~~~~ga~ll~~ps~~~~~----~~~-----------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p 227 (276)
T 2w1v_A 163 QIYAQRGCQLLVYPGAFNLT----TGP-----------AHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDP 227 (276)
T ss_dssp HHHHHTTEEEEEEECCCCTT----HHH-----------HHHHHHHHHHHHHHTCEEEEECCCCCTTSSSCCCCCCEEECT
T ss_pred HHHHHcCCCEEEECCcCCCc----CCH-----------HHHHHHHHHHHHHcCcEEEEecccccCCCCceeeeEeEEECC
Confidence 34456799999999653211 101 124456777888999998865332211112234456788999
Q ss_pred CCcEEEe
Q 041243 204 HGNIIGK 210 (406)
Q Consensus 204 ~G~vl~~ 210 (406)
+|+++..
T Consensus 228 ~G~v~~~ 234 (276)
T 2w1v_A 228 WGQVLTK 234 (276)
T ss_dssp TSCEEEE
T ss_pred CCCEeEE
Confidence 9998763
No 21
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=73.33 E-value=7.5 Score=37.39 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=46.4
Q ss_pred HHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
+.+.++.+|+|||+.|=.|..+ . . ..+...++..|.+++++++..-..... .+..++=.+.|+
T Consensus 174 ~~r~l~~~Gadlll~psa~~~~----~-~-----------~~~~~l~~arA~En~~~vv~an~~G~~-~~~~~~G~S~Ii 236 (341)
T 2uxy_A 174 IWRDCAMKGAELIVRCQGYMYP----A-K-----------DQQVMMAKAMAWANNCYVAVANAAGFD-GVYSYFGHSAII 236 (341)
T ss_dssp HHHHHHHTTCSEEEEEECCBTT----C-H-----------HHHHHHHHHHHHHHTCEEEEEECEEEC-SSCEEECCCEEE
T ss_pred HHHHHHHcCCCEEEEcCCCCCC----c-H-----------HHHHHHHHHHHHhCCcEEEEECCCCCC-CCceeeeEEEEE
Confidence 3444456899999999765321 0 1 135566788899999998864332221 123445567889
Q ss_pred cCCCcEEEe
Q 041243 202 GNHGNIIGK 210 (406)
Q Consensus 202 ~~~G~vl~~ 210 (406)
+++|+++..
T Consensus 237 dp~G~vla~ 245 (341)
T 2uxy_A 237 GFDGRTLGE 245 (341)
T ss_dssp CTTSCEEEE
T ss_pred CCCCCEEEE
Confidence 999998763
No 22
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=72.97 E-value=8.6 Score=36.79 Aligned_cols=71 Identities=14% Similarity=0.035 Sum_probs=45.8
Q ss_pred HHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEE
Q 041243 122 LIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIII 201 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi 201 (406)
+.+..+.+|+|||+.|=.|..+. . ..+...++..|.+++++++..-..... .+...+=.+.||
T Consensus 174 ~~r~~~~~Gadlil~psaw~~~~-----~-----------~~~~~~~~arA~En~~~vv~an~~G~~-~~~~~~G~S~Ii 236 (334)
T 2dyu_A 174 LAREAAYKGCNVYIRISGYSTQV-----N-----------DQWILTNRSNAWHNLMYTVSVNLAGYD-NVFYYFGEGQIC 236 (334)
T ss_dssp HHHHHHHTTCSEEEEEESSCTTS-----H-----------HHHHHHHHHHHHHHTCEEEEEECSBSS-SSCCCCCEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCc-----H-----------HHHHHHHHHHHHhCCCEEEEECCCcCC-CCeeeeeEEEEE
Confidence 34444568999999997653211 1 135566788899999988864322111 123455667889
Q ss_pred cCCCcEEE
Q 041243 202 GNHGNIIG 209 (406)
Q Consensus 202 ~~~G~vl~ 209 (406)
+|+|+++.
T Consensus 237 dp~G~vla 244 (334)
T 2dyu_A 237 NFDGTTLV 244 (334)
T ss_dssp CTTSCEEE
T ss_pred CCCCCEee
Confidence 99999876
No 23
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=72.69 E-value=18 Score=33.81 Aligned_cols=62 Identities=13% Similarity=-0.006 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
...+...+.+++.++.|+.-|++.|++|- ..+ ...+..|..++ +.++.+.+.|+++|+.+..
T Consensus 107 ~~~~~~~~~~~~~i~~A~~lG~~~v~~~~--~~~---~~~~~~~~~~~-----~~l~~l~~~a~~~Gv~l~l 168 (305)
T 3obe_A 107 ENMPKFDEFWKKATDIHAELGVSCMVQPS--LPR---IENEDDAKVVS-----EIFNRAGEITKKAGILWGY 168 (305)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTCSEEEECC--CCC---CSSHHHHHHHH-----HHHHHHHHHHHTTTCEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEeCC--CCC---CCCHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 45677788999999999999999999972 111 11223344333 4678888899999998764
No 24
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=69.51 E-value=23 Score=32.36 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 109 LDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 109 ~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
...++..++.+++.++.|+.-|++.|+++ .. ..+.-...+..|..+. +.++.+.+.|+++|+.+..
T Consensus 100 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~~-~~-~~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~Gv~l~l 165 (295)
T 3cqj_A 100 DAVRAQGLEIMRKAIQFAQDVGIRVIQLA-GY-DVYYQEANNETRRRFR-----DGLKESVEMASRAQVTLAM 165 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEC-CC-SCSSSCCCHHHHHHHH-----HHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEC-CC-CCCcCcCHHHHHHHHH-----HHHHHHHHHHHHhCCEEEE
Confidence 35677889999999999999999999987 11 1110011122233332 4577788888999987654
No 25
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=68.45 E-value=23 Score=32.19 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCC--CCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 109 LDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFA--FCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 109 ~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~--~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
.+.++..++.+.+.++.|+.-|++.|+++=.+. ++. ....+..|..+. +.++.+.+.|+++|+.+..
T Consensus 96 ~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~-~~~~~~p~~~~~~~~~~-----~~l~~l~~~a~~~Gv~l~l 164 (287)
T 3kws_A 96 PAIRKECMDTMKEIIAAAGELGSTGVIIVPAFN-GQVPALPHTMETRDFLC-----EQFNEMGTFAAQHGTSVIF 164 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCT-TCCSBCCSSHHHHHHHH-----HHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcC-CcCCCCCCHHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 356788899999999999999999888742211 111 001222233332 4677888889999986654
No 26
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=66.47 E-value=14 Score=33.78 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=41.4
Q ss_pred CCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEE
Q 041243 130 GVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIG 209 (406)
Q Consensus 130 gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~ 209 (406)
|+|+|+.|=.|... .. ..+...++..|.+++++++..-.......+...+=.+.+++|+|+++.
T Consensus 165 ga~~i~~~s~w~~~-----~~-----------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~v~~ 228 (266)
T 2e11_A 165 DFDLQLFVANWPSA-----RA-----------YAWKTLLRARAIENLCFVAAVNRVGVDGNQLHYAGDSAVIDFLGQPQV 228 (266)
T ss_dssp SCSEEEEEECCCGG-----GH-----------HHHHHHHHHHHHHTTSEEEEEECEEECTTSCEEEEEEEEECTTSCEEE
T ss_pred CCcEEEEeCCCCCC-----ch-----------HHHHHHHHHHHHhcCcEEEEEcCCcCCCCCceEeeeEEEECCCCceee
Confidence 89999998875321 11 134566778899999998864222211101244456789999999876
Q ss_pred e
Q 041243 210 K 210 (406)
Q Consensus 210 ~ 210 (406)
.
T Consensus 229 ~ 229 (266)
T 2e11_A 229 E 229 (266)
T ss_dssp E
T ss_pred e
Confidence 4
No 27
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=62.37 E-value=28 Score=31.11 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCC--cchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFC--TREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~--~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
..++...+.+++.++.|+.-|++.|++. +|+... +.+..|..+. +.++.+.+.|+++|+.+..
T Consensus 77 ~~~~~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~gv~l~l 141 (278)
T 1i60_A 77 KGHNEIITEFKGMMETCKTLGVKYVVAV----PLVTEQKIVKEEIKKSSV-----DVLTELSDIAEPYGVKIAL 141 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEE----CCBCSSCCCHHHHHHHHH-----HHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEe----cCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHhcCCEEEE
Confidence 5667889999999999999999988872 222111 1122233332 4567788888899987654
No 28
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=62.06 E-value=10 Score=39.33 Aligned_cols=73 Identities=11% Similarity=0.193 Sum_probs=48.2
Q ss_pred HHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEc
Q 041243 123 IDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIG 202 (406)
Q Consensus 123 i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~ 202 (406)
.+.++.+|++||+.|=.|..... +. ..+...++..|.+++++++..-..... .+..++-.+++++
T Consensus 178 ~r~la~~GA~ii~~psAs~~~~g---k~-----------~~r~~ll~arA~e~~~~vvy~N~vG~~-~~~~f~G~S~iid 242 (565)
T 4f4h_A 178 AQLAKAAGAQVLIVPNGSPYHMN---KD-----------AVRIDILRARIRETGLPMVYVNLVGGQ-DELVFDGGSFVLD 242 (565)
T ss_dssp HHHHHHTTCSEEEEEECCBCCTT---HH-----------HHHHHHHHHHHHHHCCCEEEEECEEEE-TTEEEEBCCEEEC
T ss_pred hHHHHhCCCeeeecccccccccC---cH-----------HHHHHHHHHHHHHhCCcEEEeeeecCC-CCeEEECCcceec
Confidence 34456789999999976542211 01 135567888999999988864322221 1345678899999
Q ss_pred CCCcEEEe
Q 041243 203 NHGNIIGK 210 (406)
Q Consensus 203 ~~G~vl~~ 210 (406)
++|+++..
T Consensus 243 p~G~vla~ 250 (565)
T 4f4h_A 243 GAGELVAK 250 (565)
T ss_dssp TTSCEEEE
T ss_pred CCCcEEEE
Confidence 99998764
No 29
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=59.98 E-value=7.7 Score=38.53 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=44.2
Q ss_pred HHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEc
Q 041243 123 IDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIG 202 (406)
Q Consensus 123 i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~ 202 (406)
.+..+.+|+|+|+.|=.|... +.. ..+...++..|.+++++++..-.......+...+=.+.|++
T Consensus 178 ~r~l~~~Ga~il~~psa~~~~----~~~-----------~~~~~~~~arA~En~~~vv~an~~G~~~~~~~~~G~S~ii~ 242 (440)
T 1ems_A 178 SLWNRKRGAQLLSFPSAFTLN----TGL-----------AHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVD 242 (440)
T ss_dssp HHHHHHTTCSEEECCBCCCHH----HHH-----------HHHHHHHHHHHHHHTCEEEECBBEEEEETTEEEECCCEEEC
T ss_pred HHHHHHcCCcEEEECCcCCCC----CcH-----------HHHHHHHHHHHHhcCcEEEEecccccCCCCceeeeeeEEEC
Confidence 334456899999998654210 000 12445677789999999987433221110123344678999
Q ss_pred CCCcEEEe
Q 041243 203 NHGNIIGK 210 (406)
Q Consensus 203 ~~G~vl~~ 210 (406)
|+|+++..
T Consensus 243 P~G~vla~ 250 (440)
T 1ems_A 243 PWGAVVAQ 250 (440)
T ss_dssp TTSCEEEE
T ss_pred CCCCeecc
Confidence 99998764
No 30
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=55.52 E-value=20 Score=35.31 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEec----CCCCCCCC--CCcch----hHHhhhcC--CCCcHHHHHHHHHHHhcCcEE
Q 041243 112 KKAIFQKLKLLIDAAGVSGVNILCLQ----EAWTMPFA--FCTRE----KRWCEFAE--PVDGESTQFLQELARKYNMVI 179 (406)
Q Consensus 112 ~~~n~~~i~~~i~~A~~~gvdLVvfP----E~~l~g~~--~~~~~----~~~~~~ae--~~~~~~~~~l~~lAkk~~i~I 179 (406)
....++++.++++.|++.|||.|=|+ +...+++. |.... ..+ ++-+ ....+.++.|.+.|++.|+.+
T Consensus 39 H~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~y-e~~~~~~l~~e~~~~L~~~~~~~Gi~~ 117 (385)
T 1vli_A 39 HDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIF-SLVQSMEMPAEWILPLLDYCREKQVIF 117 (385)
T ss_dssp TTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHH-HHGGGBSSCGGGHHHHHHHHHHTTCEE
T ss_pred ccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHH-HHHHhcCCCHHHHHHHHHHHHHcCCcE
Confidence 34567899999999999999999985 43335554 32110 011 2222 234678999999999999999
Q ss_pred Eeece
Q 041243 180 ISPIL 184 (406)
Q Consensus 180 v~G~~ 184 (406)
++...
T Consensus 118 ~stpf 122 (385)
T 1vli_A 118 LSTVC 122 (385)
T ss_dssp ECBCC
T ss_pred EEccC
Confidence 97644
No 31
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=54.89 E-value=20 Score=33.23 Aligned_cols=72 Identities=10% Similarity=-0.040 Sum_probs=41.1
Q ss_pred HHHHHHCCCcEEEEcCCCCCCCC-------------------cCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCC
Q 041243 259 WLAFGLNGAEIVFNPSATVGELS-------------------EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGD 319 (406)
Q Consensus 259 ~~~~~~~Gadii~~Psa~~~~~~-------------------~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~ 319 (406)
.+..+.+|||||+.|-.+..... ...+....+..|.+++++++.--.. .. .+
T Consensus 31 i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~-~~--------~~ 101 (303)
T 1uf5_A 31 LTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAE-LV--------VE 101 (303)
T ss_dssp HHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHHHHHHHHTCEEEEEEEE-EE--------EE
T ss_pred HHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHHHHHHHhCeEEEEeeeE-ec--------CC
Confidence 34455789999999987543211 1123334555677889888643210 00 00
Q ss_pred CCCCCCCCcccceeeEEECCCCCee
Q 041243 320 GKPQHKDFGHFYGSSHFSAPDGSCT 344 (406)
Q Consensus 320 G~~~~~~~~~~~G~S~Ii~P~G~i~ 344 (406)
|. ...+|=++.+++|+|+++
T Consensus 102 ~~-----~~~~yNs~~~i~~~G~i~ 121 (303)
T 1uf5_A 102 GG-----VKRRFNTSILVDKSGKIV 121 (303)
T ss_dssp TT-----EEEEEEEEEEECTTSCEE
T ss_pred CC-----CcceeeEEEEECCCCCEe
Confidence 10 013567788999999864
No 32
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=54.52 E-value=36 Score=33.46 Aligned_cols=72 Identities=13% Similarity=0.024 Sum_probs=42.6
Q ss_pred HHHHHHHCCCcEEEEcCCCCCCCC-----------------cCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCC
Q 041243 258 NWLAFGLNGAEIVFNPSATVGELS-----------------EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDG 320 (406)
Q Consensus 258 ~~~~~~~~Gadii~~Psa~~~~~~-----------------~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G 320 (406)
+.+..+.+|||||+.|-.+..... ...+....+..|.+++++++..- .-.. ..++
T Consensus 104 li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~~l~~lA~~~~i~Iv~G~-~e~~-------~~~~ 175 (405)
T 2vhh_A 104 MIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSI-LERD-------MEHG 175 (405)
T ss_dssp HHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHHHHHHHHHHTTCEEEEEE-EEEE-------TTTT
T ss_pred HHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHHHHHHHHHHCCEEEEEec-eecc-------cCCC
Confidence 344556789999999987542211 01222344556778999887532 1000 0001
Q ss_pred CCCCCCCcccceeeEEECCCCCee
Q 041243 321 KPQHKDFGHFYGSSHFSAPDGSCT 344 (406)
Q Consensus 321 ~~~~~~~~~~~G~S~Ii~P~G~i~ 344 (406)
..+|=++.+++|+|+++
T Consensus 176 -------~~~yNsa~vi~p~G~i~ 192 (405)
T 2vhh_A 176 -------ETIWNTAVVISNSGRYL 192 (405)
T ss_dssp -------TEEEEEEEEECTTSCEE
T ss_pred -------CcEEEEEEEECCCCeEE
Confidence 24677789999999864
No 33
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=53.27 E-value=28 Score=33.61 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=42.2
Q ss_pred HHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeece
Q 041243 120 KLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPIL 184 (406)
Q Consensus 120 ~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~ 184 (406)
.+.++.+++.|.+-||+.-.-.-||.+....-.+.........+.++.+.++|+++||-|.+|+.
T Consensus 57 ~~~~~~mK~~GikyvIl~~~~~~gf~~~pS~~~~~~~~~~p~~Dlv~~~l~aa~k~Gmkv~~Gly 121 (340)
T 4h41_A 57 DLDFQHMKRIGIDTVIMIRSGYRKFMTYPSPYLLKKGCYMPSVDLVDMYLRLAEKYNMKFYFGLY 121 (340)
T ss_dssp HHHHHHHHHTTCCEEEESCSEETTEESSCCHHHHHTTCCCCSBCHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEEEEeeCCeeccCcccccccCccCCcccHHHHHHHHHHHhCCeEEEecC
Confidence 34455557789999999876556665432111121111112356899999999999999988864
No 34
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=51.96 E-value=62 Score=29.89 Aligned_cols=61 Identities=10% Similarity=-0.004 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcE--EEe
Q 041243 111 QKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMV--IIS 181 (406)
Q Consensus 111 ~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~--Iv~ 181 (406)
..+...+.+++.++.|++-|++.|++|-. +.. ..+..|..++ +.++.+.+.|+++|+. +..
T Consensus 102 ~~~~~~~~~~~~i~~A~~lG~~~v~~~~~---~~~--~~~~~~~~~~-----~~l~~l~~~a~~~Gv~~~l~~ 164 (303)
T 3l23_A 102 VTPKIMEYWKATAADHAKLGCKYLIQPMM---PTI--TTHDEAKLVC-----DIFNQASDVIKAEGIATGFGY 164 (303)
T ss_dssp THHHHHHHHHHHHHHHHHTTCSEEEECSC---CCC--CSHHHHHHHH-----HHHHHHHHHHHHTTCTTCEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEECCC---CCC--CCHHHHHHHH-----HHHHHHHHHHHHCCCcceEEE
Confidence 35777899999999999999999999732 111 1222344333 4678888999999987 653
No 35
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=51.74 E-value=9 Score=33.63 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=25.0
Q ss_pred CccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCC
Q 041243 89 RVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEA 139 (406)
Q Consensus 89 ~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~ 139 (406)
+.+++-++..||.-.. ..+.....+.+.++| .+.++|||||+|.
T Consensus 10 ~~~~l~v~s~Ni~g~~----~~~~~~r~~~i~~~i---~~~~pDIi~LQEv 53 (256)
T 4fva_A 10 KGFEVSVMSWNIDGLD----GRSLLTRMKAVAHIV---KNVNPDILFLQEV 53 (256)
T ss_dssp TTCEEEEEEEECCTTC----CTTHHHHHHHHHHHH---HHHCCSEEEEEEE
T ss_pred CCCEEEEEEEecCCCC----CcCHHHHHHHHHHHH---HHcCCCEEEEEec
Confidence 3455556666764111 122333344455555 4568999999997
No 36
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=50.64 E-value=36 Score=35.17 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=45.9
Q ss_pred HHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEc
Q 041243 123 IDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIG 202 (406)
Q Consensus 123 i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~ 202 (406)
.+.++.+|+|||+.|=.|. |... -...+...++..|.+++++++..-...... +-.++=.++|++
T Consensus 173 ~~~la~~Ga~ii~~psa~p--~~~g------------k~~~~~~l~~~rA~e~~~~vv~an~~G~~~-~~~f~G~S~iid 237 (590)
T 3n05_A 173 VPAARSAGAGLLLSVNASP--YERD------------KDDTRLELVRKRAQEAGCTTAYLAMIGGQD-ELVFDGDSIVVD 237 (590)
T ss_dssp HHHHHHTTCSEEEEEECCB--CCCC------------SSCHHHHHHHHHHHHHTSEEEEEECEEEET-TEEEEBCCEEEC
T ss_pred HHHHHHcCCCEEEEecCCc--cccC------------cHHHHHHHHHHHHHHhCCEEEEEecccCCC-CeEEeCcEEEEC
Confidence 3344568999999997653 2110 012356778899999999988643222110 223344578889
Q ss_pred CCCcEEEe
Q 041243 203 NHGNIIGK 210 (406)
Q Consensus 203 ~~G~vl~~ 210 (406)
++|+++..
T Consensus 238 p~G~vla~ 245 (590)
T 3n05_A 238 RDGEVVAR 245 (590)
T ss_dssp TTSCEEEE
T ss_pred CCCcEEEE
Confidence 99998764
No 37
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=47.77 E-value=68 Score=28.86 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEe-cCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCL-QEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvf-PE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
+..+...+.+++.++.|+.-|+..|++ |-....+ ...+..|..+. ..++.+.+.|+++|+.+..
T Consensus 77 ~~~~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~---~~~~~~~~~~~-----~~l~~l~~~a~~~Gv~l~l 141 (286)
T 3dx5_A 77 ADFEKTIEKCEQLAILANWFKTNKIRTFAGQKGSA---DFSQQERQEYV-----NRIRMICELFAQHNMYVLL 141 (286)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGG---GSCHHHHHHHH-----HHHHHHHHHHHHTTCEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcc---cCcHHHHHHHH-----HHHHHHHHHHHHhCCEEEE
Confidence 456778899999999999999998865 3221100 01122233332 4677888888999986654
No 38
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=47.68 E-value=40 Score=30.06 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 109 LDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 109 ~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
...++..++.+++.++.|+.-|++.|+++=.+..+.. ...+..|..++ +.++.+.+.|+++|+.+..
T Consensus 75 ~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~-~~~~~~~~~~~-----~~l~~l~~~a~~~gv~l~l 141 (275)
T 3qc0_A 75 ASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGS-KNIDAARRMVV-----EGIAAVLPHARAAGVPLAI 141 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTC-CCHHHHHHHHH-----HHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCC-cCHHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 3567788999999999999999998877522111110 11122233332 4677888888999986654
No 39
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=46.78 E-value=45 Score=30.20 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
..++..++.+++.++.|+.-|++.|++. +|+.....+..|..+. ..++.+.+.|+++|+.+..
T Consensus 95 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~----~G~~~~~~~~~~~~~~-----~~l~~l~~~a~~~Gv~l~l 157 (290)
T 3tva_A 95 ETRASRVAEMKEISDFASWVGCPAIGLH----IGFVPESSSPDYSELV-----RVTQDLLTHAANHGQAVHL 157 (290)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCSEEEEC----CCCCCCTTSHHHHHHH-----HHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEc----CCCCcccchHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 4567889999999999999999998873 2221111122233332 4577888888999987654
No 40
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=46.48 E-value=38 Score=30.33 Aligned_cols=63 Identities=8% Similarity=-0.147 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 111 QKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 111 ~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
+++..++.+++.++.|+.-|++.|+++ ..|..-......|..+. +.++.+.+.|+++|+.+..
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~~---~~p~~~~~~~~~~~~~~-----~~l~~l~~~a~~~Gv~l~l 140 (281)
T 3u0h_A 78 VFLRELSLLPDRARLCARLGARSVTAF---LWPSMDEEPVRYISQLA-----RRIRQVAVELLPLGMRVGL 140 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCEEEEE---CCSEESSCHHHHHHHHH-----HHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEe---ecCCCCCcchhhHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 466778899999999999999999854 11111111112233232 4567788888999987765
No 41
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=44.06 E-value=65 Score=28.44 Aligned_cols=63 Identities=8% Similarity=0.071 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCC--CcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAF--CTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~--~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
+.++..++.+++.++.|++-|++.|++. +|... .+.+..|..+. +.++.+.+.|+++|+.+..
T Consensus 78 ~~~~~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~gv~l~~ 142 (260)
T 1k77_A 78 GREHEAHADIDLALEYALALNCEQVHVM----AGVVPAGEDAERYRAVFI-----DNIRYAADRFAPHGKRILV 142 (260)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCSEEECC----CCBCCTTSCHHHHHHHHH-----HHHHHHHHHHGGGTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCEEEEC----cCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 4567889999999999999999998873 12211 01122233332 4667788888899987654
No 42
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=41.17 E-value=95 Score=27.99 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCC--CCCCCC---CC----c-chhHHhhhcCCCCcHHHHHHHHHHHhcCcEE
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEA--WTMPFA---FC----T-REKRWCEFAEPVDGESTQFLQELARKYNMVI 179 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~--~l~g~~---~~----~-~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~I 179 (406)
+.++..++.+++.++.|+.-|++.|+++-. +..|.. +. . .+..|..+. +.++.+.+.|+++|+.+
T Consensus 83 ~~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~gv~l 157 (301)
T 3cny_A 83 DGIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVC-----KGLNHYGEIAAKYGLKV 157 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHH-----HHHHHHHHHHHHTTCEE
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHH-----HHHHHHHHHHHHcCCEE
Confidence 446778899999999999999999887642 111211 00 0 122233222 46777888889999876
Q ss_pred Ee
Q 041243 180 IS 181 (406)
Q Consensus 180 v~ 181 (406)
..
T Consensus 158 ~l 159 (301)
T 3cny_A 158 AY 159 (301)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 43
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=40.57 E-value=1.5e+02 Score=26.55 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCC--CC---cchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 109 LDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFA--FC---TREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 109 ~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~--~~---~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
.+.++..++.+++.++.|+.-|++.|+.+ +.+|+. +. ..+..|..+. +.++.+.+.|+++|+.+..
T Consensus 80 ~~~r~~~~~~~~~~i~~a~~lG~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~Gv~l~l 150 (294)
T 3vni_A 80 PDIRKNAKAFYTDLLKRLYKLDVHLIGGA--LYSYWPIDYTKTIDKKGDWERSV-----ESVREVAKVAEACGVDFCL 150 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEES--TTSCSSCCTTSCCCHHHHHHHHH-----HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeecc--ccCCCCCcCCCCCCHHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 35677889999999999999999999742 112221 11 1122233332 4677788888999987543
No 44
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=39.30 E-value=54 Score=29.03 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCC-cchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEE
Q 041243 109 LDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFC-TREKRWCEFAEPVDGESTQFLQELARKYNMVII 180 (406)
Q Consensus 109 ~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~-~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv 180 (406)
...++..++.+.+.++.|+.-|++.|++.=.+..+ .+. ..+..|..+. +.++.+.+.|+++|+.+.
T Consensus 68 ~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~-~~~~~~~~~~~~~~-----~~l~~l~~~a~~~gv~l~ 134 (254)
T 3ayv_A 68 PEVRGLTLRRLLFGLDRAAELGADRAVFHSGIPHG-RTPEEALERALPLA-----EALGLVVRRARTLGVRLL 134 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCCTT-CCHHHHHHTHHHHH-----HHTHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcc-cccccHHHHHHHHH-----HHHHHHHHHHhhcCCEEE
Confidence 35678889999999999999999988764221111 000 1111133222 355677788888888664
No 45
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=38.61 E-value=88 Score=30.59 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecC
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQE 138 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE 138 (406)
.+++..++.+++.|+.|++.|+.+||...
T Consensus 97 ~~r~~~ie~~k~~i~~aa~lGi~~v~~nf 125 (386)
T 3bdk_A 97 PNRDALIENYKTSIRNVGAAGIPVVCYNF 125 (386)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 46889999999999999999999999743
No 46
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=38.58 E-value=99 Score=29.80 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCC--C-cchhHHhhhcCCCCcHHHHHHHHHHHhcC--cEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAF--C-TREKRWCEFAEPVDGESTQFLQELARKYN--MVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~--~-~~~~~~~~~ae~~~~~~~~~l~~lAkk~~--i~Iv~ 181 (406)
..++..++.+++.++.|++-|++.|++.=. ..|+.+ . ..+..|..++ +.++.+.+.|+++| +.|..
T Consensus 109 ~~r~~~i~~~~~~i~~A~~LGa~~vvv~~G-~~g~~~~~~~~~~~~~~~~~-----e~L~~l~~~A~~~G~~v~l~l 179 (394)
T 1xla_A 109 SIRRFALAKVLHNIDLAAEMGAETFVMWGG-REGSEYDGSKDLAAALDRMR-----EGVDTAAGYIKDKGYNLRIAL 179 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEECCT-TCEESSGGGCCHHHHHHHHH-----HHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEECCC-CCccccccccCHHHHHHHHH-----HHHHHHHHHHHhcCCCeEEEE
Confidence 456788999999999999999998876211 011111 0 1111233222 35677778888888 76654
No 47
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=37.97 E-value=27 Score=30.90 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=23.6
Q ss_pred cEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCC
Q 041243 91 VRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTM 142 (406)
Q Consensus 91 vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~ 142 (406)
+.+-++|.|+.- .. ...+. +++...+.++|||+++|....
T Consensus 18 ~~lri~s~Nv~~--------~~-~~~~~---l~~~i~~~~~DIv~lQE~~~~ 57 (245)
T 1wdu_A 18 PPYRVLQANLQR--------KK-LATAE---LAIEAATRKAAIALIQEPYVG 57 (245)
T ss_dssp CCEEEEEEECTT--------CH-HHHHH---HHHHHHHHTCSEEEEESCCC-
T ss_pred cceeeeeeeccc--------cH-HHHHH---HHHHHhhcCCCEEEEEccccc
Confidence 345667777751 11 12233 444445678999999998553
No 48
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=37.07 E-value=15 Score=31.44 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEecCC
Q 041243 112 KKAIFQKLKLLIDAAGVSGVNILCLQEA 139 (406)
Q Consensus 112 ~~~n~~~i~~~i~~A~~~gvdLVvfPE~ 139 (406)
.....+.+.+.| .+.++|||||+|.
T Consensus 19 ~~~r~~~i~~~i---~~~~pDIi~LQEv 43 (250)
T 4f1h_A 19 LADRARGLCSYL---ALYTPDVVFLQEL 43 (250)
T ss_dssp HHHHHHHHHHHH---HHHCCSEEEEEEE
T ss_pred HHHHHHHHHHHH---HHcCCCEEEEEeC
Confidence 334444455555 4568999999996
No 49
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=36.02 E-value=95 Score=27.74 Aligned_cols=64 Identities=8% Similarity=0.086 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
+.++..++.+++.++.|+.-|++.|++.=.. +... ..+..|..+. +.++.+.+.|+++|+.+..
T Consensus 86 ~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~--~~~~-~~~~~~~~~~-----~~l~~l~~~a~~~Gv~l~l 149 (269)
T 3ngf_A 86 GREQEFRDNVDIALHYALALDCRTLHAMSGI--TEGL-DRKACEETFI-----ENFRYAADKLAPHGITVLV 149 (269)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCEEECCBCB--CTTS-CHHHHHHHHH-----HHHHHHHHHHGGGTCEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCEEEEccCC--CCCC-CHHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 4577888999999999999999988873111 1111 1122243333 4677888889999987764
No 50
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=34.66 E-value=1.3e+02 Score=27.95 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCC--c------------chhHHhhhcCCCCcHHHHHHHHHHHhc
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFC--T------------REKRWCEFAEPVDGESTQFLQELARKY 175 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~--~------------~~~~~~~~ae~~~~~~~~~l~~lAkk~ 175 (406)
..++..++.+++.++.|+.-|++.|+-|=....|.... . .+..|..++ +.++.+.+.|+++
T Consensus 102 ~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~ 176 (335)
T 2qw5_A 102 EQRQEALEYLKSRVDITAALGGEIMMGPIVIPYGVFPTTDFNEPIWSDELQEHLKVRYANAQ-----PILDKLGEYAEIK 176 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCTTCCCBCTTCCBCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEeccccCccccccCCcccccccccchhhhHHHHHHHHH-----HHHHHHHHHHHHc
Confidence 55778889999999999999999996553211111000 0 111233332 3567778888889
Q ss_pred CcEEEe
Q 041243 176 NMVIIS 181 (406)
Q Consensus 176 ~i~Iv~ 181 (406)
|+.+..
T Consensus 177 Gv~l~l 182 (335)
T 2qw5_A 177 KVKLAI 182 (335)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 977654
No 51
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=34.07 E-value=1.5e+02 Score=26.96 Aligned_cols=67 Identities=6% Similarity=0.020 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCC-C--cchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAF-C--TREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~-~--~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
..++..++.+++.++.|+.-|+..|+.|=....|... . ..+..|..+. +.++.+.+.|+++|+.+..
T Consensus 100 ~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~gv~l~l 169 (309)
T 2hk0_A 100 AVRAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGV-----EGINGIADFANDLGINLCI 169 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHH-----HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 5577889999999999999999998854211112210 0 1122233332 4667788888899987654
No 52
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=31.48 E-value=1.1e+02 Score=29.92 Aligned_cols=61 Identities=16% Similarity=0.341 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEecCCC--CCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceee
Q 041243 115 IFQKLKLLIDAAGVSGVNILCLQEAW--TMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILER 186 (406)
Q Consensus 115 n~~~i~~~i~~A~~~gvdLVvfPE~~--l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~ 186 (406)
..+.+.++++.+++.|+|+|.|.=+- +++|.|. . ...+.++.|.+.+++.|+.+++-....
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~-------g----l~~egl~~L~~~~~~~Gl~~~te~~d~ 216 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQ-------G----LGLEGLKILKRVSDEYGLGVISEIVTP 216 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCC-------C----CTHHHHHHHHHHHHHHTCEEEEECCSG
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhc-------C----CCHHHHHHHHHHHHHcCCEEEEecCCH
Confidence 46678888888889999999987642 1233221 1 123577899999999999999876543
No 53
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=29.96 E-value=1.2e+02 Score=29.59 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcE
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMV 178 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~ 178 (406)
.+..++++.+.++++...+.|..++||||..=+--.- ....|. -.+......+.+..+|.+.++.
T Consensus 203 ~~~r~n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~--~~g~l~--~~~Fk~gs~~~~~~LA~ksg~P 267 (367)
T 1iuq_A 203 TKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDP--STGEWY--PAPFDASSVDNMRRLIQHSDVP 267 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCT--TTCCBC--CCCCCHHHHHHHHHHHHTSSSC
T ss_pred hhhHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCC--CCCccc--cccccchhhhHHHHHHHHcCCC
Confidence 5677888888888888888899999999973211000 000010 0112245788899999998876
No 54
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=28.90 E-value=29 Score=30.15 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEecCC
Q 041243 113 KAIFQKLKLLIDAAGVSGVNILCLQEA 139 (406)
Q Consensus 113 ~~n~~~i~~~i~~A~~~gvdLVvfPE~ 139 (406)
....+.+.+.| .+.++|||||+|.
T Consensus 26 ~~r~~~i~~~i---~~~~pDIi~LQEv 49 (256)
T 4gz1_A 26 PERARGVCSCL---ALYSPDVVFLQEV 49 (256)
T ss_dssp HHHHHHHHHHH---HHHCCSEEEEEEE
T ss_pred HHHHHHHHHHH---HHcCCCEEEEEcC
Confidence 33344444444 4568999999996
No 55
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=28.60 E-value=1.2e+02 Score=27.90 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHhhCCCeEEEecCCCCC-C--CCCCc-----chhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 111 QKKAIFQKLKLLIDAAGVSGVNILCLQEAWTM-P--FAFCT-----REKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 111 ~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~-g--~~~~~-----~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
.++..++.+++.++.|+.-|++.|++.=.... + +.+.. .+..|..+. +.++.+.+.|+++|+.+..
T Consensus 105 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~Gv~l~l 178 (340)
T 2zds_A 105 VRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFA-----DRWNPILDVFDAEGVRFAH 178 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 46678899999999999999998887411100 0 00110 011232222 4567778888889986643
No 56
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=27.37 E-value=1.8e+02 Score=26.22 Aligned_cols=57 Identities=9% Similarity=-0.217 Sum_probs=37.2
Q ss_pred EEEeccCCcchHHHHHHHHCCCcEEEE--cCCC-CCCCCcCcHHHHHHHHHHHcCcEEEEE
Q 041243 246 AVNICYGRHHPLNWLAFGLNGAEIVFN--PSAT-VGELSEPMWPIEARNAAIANSYFVGSI 303 (406)
Q Consensus 246 gv~ICyD~~~Pe~~~~~~~~Gadii~~--Psa~-~~~~~~~~w~~~~r~rAien~~~vv~a 303 (406)
.|++|-|... +.......+|+|+|+. |--| ........+......++++|++.+.++
T Consensus 37 ~I~~~lD~t~-~vi~eAi~~~adlIitHHP~~f~~~~~~i~~~~~~~i~~li~~~I~ly~~ 96 (247)
T 1nmo_A 37 KIVTGVTASQ-ALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGW 96 (247)
T ss_dssp EEEEEEECCH-HHHHHHHHTTCSEEEEEECSCCTTSCCCCCTHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEEcCCH-HHHHHHHhCCCCEEEECCchhccCCCccccchHHHHHHHHHHCCCEEEEe
Confidence 4677777654 4466777899999996 6666 333222333334445788999988765
No 57
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=26.94 E-value=1.4e+02 Score=28.79 Aligned_cols=67 Identities=13% Similarity=-0.010 Sum_probs=50.8
Q ss_pred CceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCC
Q 041243 242 FGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGT 308 (406)
Q Consensus 242 ~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~ 308 (406)
..++.++-+|=-..+++.+.+...|++=|+.-+.-.+......|...+..+|++.++.||.+.+++.
T Consensus 229 ~~~V~il~~~pG~~~~~l~a~~~~g~~GiVle~~G~Gn~p~~~~~~~~l~~a~~~Gi~VV~~Src~~ 295 (358)
T 2him_A 229 PQPIGVVTIYPGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMS 295 (358)
T ss_dssp CCCEEEEECCTTCCHHHHHHHTSSSCSEEEEEEBTTTBCCCCHHHHHHHHHHHHTTCEEEEEESSSB
T ss_pred CCcEEEEEeCCCCCHHHHHHHHhCCCCEEEEecCCCCCCCCcHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 4689999999999999888887889998888655333333223544555678899999999999866
No 58
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=26.19 E-value=39 Score=32.45 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=23.6
Q ss_pred CccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCC
Q 041243 89 RVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEA 139 (406)
Q Consensus 89 ~~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~ 139 (406)
...++-++-.||.--. ..+...-.+.+.++| .+.++|||||+|.
T Consensus 116 ~~~~lkVlSWNI~Gl~----~~~~~~R~~~I~~~I---~~~~PDIV~LQEv 159 (362)
T 4gew_A 116 KGFEVSVMSWNIDGLD----GRSLLTRMKAVAHIV---KNVNPDILFLQEV 159 (362)
T ss_dssp TTCEEEEEEEECCTTC----CTTHHHHHHHHHHHH---HHHCCSEEEEEEE
T ss_pred CCCeEEEEEEEeCCCC----CcCHHHHHHHHHHHH---HHcCCCEEEEEcC
Confidence 3444444556663100 012333334444444 4668999999996
No 59
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=25.67 E-value=83 Score=28.22 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCC---CC-CcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPF---AF-CTREKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~---~~-~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
..++..++.+++.++.|++-|+..|+.|=....|. .. ...+..|..+. +.++.+.+.|+++|+.+..
T Consensus 81 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~l~~l~~~a~~~gv~l~l 151 (290)
T 2qul_A 81 SVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAI-----ESVRRVIKVAEDYGIIYAL 151 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHH-----HHHHTTHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHH-----HHHHHHHHHHHHcCCEEEE
Confidence 55778889999999999999999988541000021 10 01122233332 3566777888889986654
No 60
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=25.30 E-value=1.1e+02 Score=29.55 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEecC----CCCCCCC--CCcc-----hhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEe
Q 041243 113 KAIFQKLKLLIDAAGVSGVNILCLQE----AWTMPFA--FCTR-----EKRWCEFAEPVDGESTQFLQELARKYNMVIIS 181 (406)
Q Consensus 113 ~~n~~~i~~~i~~A~~~gvdLVvfPE----~~l~g~~--~~~~-----~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~ 181 (406)
...++.+.++++.|++.|||.|=|+= ...+++. |..+ .....+..+ ...+.++.|.+.|+++|+.+++
T Consensus 31 ~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~-l~~e~~~~L~~~~~~~Gi~~~s 109 (349)
T 2wqp_A 31 EGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCA-LNEEDEIKLKEYVESKGMIFIS 109 (349)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHC-CCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhC-CCHHHHHHHHHHHHHhCCeEEE
Confidence 45678999999999999999999863 2224433 3211 001111111 2357899999999999999988
Q ss_pred ece
Q 041243 182 PIL 184 (406)
Q Consensus 182 G~~ 184 (406)
...
T Consensus 110 t~~ 112 (349)
T 2wqp_A 110 TLF 112 (349)
T ss_dssp EEC
T ss_pred eeC
Confidence 654
No 61
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=25.02 E-value=35 Score=33.13 Aligned_cols=74 Identities=18% Similarity=0.023 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHhhCCCe-----EEEecCC----CCCC-CCCCcchhHHhhhc-CCCCcHHHHHHHHHHHhcCcEE
Q 041243 111 QKKAIFQKLKLLIDAAGVSGVN-----ILCLQEA----WTMP-FAFCTREKRWCEFA-EPVDGESTQFLQELARKYNMVI 179 (406)
Q Consensus 111 ~~~~n~~~i~~~i~~A~~~gvd-----LVvfPE~----~l~g-~~~~~~~~~~~~~a-e~~~~~~~~~l~~lAkk~~i~I 179 (406)
+-...++...++|+.|++.|+| -|=||=+ ..++ |........+..+. .....+..+.|.+.|++.|+.+
T Consensus 15 NHnGdle~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~ 94 (350)
T 3g8r_A 15 NHMGNVEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQKLVAEMKANGFKA 94 (350)
T ss_dssp TTTTCSHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHHHHHHHHHTTCEE
T ss_pred CccCcHHHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcE
Confidence 4455678899999999988887 8888732 1111 10000000011111 0134578999999999999999
Q ss_pred Eeece
Q 041243 180 ISPIL 184 (406)
Q Consensus 180 v~G~~ 184 (406)
++...
T Consensus 95 ~st~f 99 (350)
T 3g8r_A 95 ICTPF 99 (350)
T ss_dssp EEEEC
T ss_pred EeccC
Confidence 98654
No 62
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=24.98 E-value=1.9e+02 Score=27.34 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=50.2
Q ss_pred CceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCC
Q 041243 242 FGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGT 308 (406)
Q Consensus 242 ~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~ 308 (406)
..++.++-+|=-..+++.+.+...|++=|+.-+.-.+.. +.|...+..+|++.++.||.+.+++.
T Consensus 217 ~~~V~il~~~pG~~~~~l~~~~~~g~~GiVle~~G~Gn~--p~~~~~~l~~a~~~Gi~VV~~Sr~~~ 281 (327)
T 1o7j_A 217 LPKVDILYGYQDDPEYLYDAAIQHGVKGIVYAGMGAGSV--SVRGIAGMRKALEKGVVVMRSTRTGN 281 (327)
T ss_dssp CCCEEEEECCTTCCTHHHHHHHHTTCSEEEEEEBTTTBC--CHHHHHHHHHHHHTTCEEEEEESSSB
T ss_pred CCcEEEEEeCCCCCHHHHHHHHhCCCCEEEEeeECCCCC--CHHHHHHHHHHHHCCceEEEECCCCC
Confidence 468999999999999999888889999888765433333 24444455578899999999999865
No 63
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=24.81 E-value=2e+02 Score=27.28 Aligned_cols=65 Identities=17% Similarity=0.063 Sum_probs=50.2
Q ss_pred CceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCC
Q 041243 242 FGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGT 308 (406)
Q Consensus 242 ~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~ 308 (406)
..++.++-+|=-..+++.+.+...|++=|+.-+.-.+.. +.|...+..+|++.++.||.+.+++.
T Consensus 218 ~~~V~il~~~pG~~~~~l~~~~~~g~~GiVle~~G~Gn~--p~~~~~~l~~a~~~Gi~VV~~Sr~~~ 282 (332)
T 2wlt_A 218 LPKVDIIYTHAGMTPDLFQASLNSHAKGVVIAGVGNGNV--SAGFLKAMQEASQMGVVIVRSSRVGS 282 (332)
T ss_dssp CCCEEEEECCTTCCTHHHHHHHHTTCSEEEEEEBTTTBC--CHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHhCCCCEEEEeeECCCCC--CHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 468999999999999999888889999888765433332 34444455578899999999999865
No 64
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=24.23 E-value=85 Score=28.56 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=14.2
Q ss_pred HHHHHHHhhCCCeEEEecCC
Q 041243 120 KLLIDAAGVSGVNILCLQEA 139 (406)
Q Consensus 120 ~~~i~~A~~~gvdLVvfPE~ 139 (406)
..+++...+.++|||||+|.
T Consensus 33 ~~i~~~i~~~~~DIv~LQEv 52 (298)
T 3mpr_A 33 PVIAQMVQYHDFDIFGTQEC 52 (298)
T ss_dssp HHHHHHHHHTTCSEEEEESB
T ss_pred HHHHHHHHHcCCCEEEEeCC
Confidence 33444344568999999998
No 65
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=24.16 E-value=89 Score=32.59 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEeeceeeccCCCCeeEE-EEEEE
Q 041243 123 IDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWN-TAIII 201 (406)
Q Consensus 123 i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G~~e~~~~~~~~~~N-savvi 201 (406)
.+.++.+|+|||+.|=.|...+ . .. ..+...++..|.+++++++..-...... ++..|. .++|+
T Consensus 175 ~r~la~~GAdii~~psas~~~~--g-k~-----------~~~~~l~~~rA~e~~~~vv~aN~~G~~~-~~~~f~G~S~I~ 239 (634)
T 3ilv_A 175 GIRHYEKGATLVLNPSASHFAF--G-KS-----------AIRYDLVIGGSERFDCTYVYANLLGNEA-GRMIYDGEVLIA 239 (634)
T ss_dssp ---CGGGTCSEEEEEECCBCCT--T-HH-----------HHHHHHHHHHHHHTTSEEEEEECEEESS-SSCEEECCEEEE
T ss_pred HHHHHHCCCcEEEEecCCcccc--C-cH-----------HHHHHHHHHHHHHhCCEEEEEcCccCCC-CceEEcceEEEE
Confidence 3444577999999997754221 1 00 1345667888999999988532222111 233443 34444
Q ss_pred cCCCcEEEe
Q 041243 202 GNHGNIIGK 210 (406)
Q Consensus 202 ~~~G~vl~~ 210 (406)
++|+++..
T Consensus 240 -p~G~vla~ 247 (634)
T 3ilv_A 240 -HKGKLIQR 247 (634)
T ss_dssp -ETTEEEEE
T ss_pred -cCCeEEEE
Confidence 89998764
No 66
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=23.92 E-value=2.5e+02 Score=23.90 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=58.0
Q ss_pred CceEeeeeecccccccCCCC---ccEEEEEecccCCCCcccc-------hhhHHH----HHHHHHHHHHHHhhCCCeEEE
Q 041243 70 DFDLQGFCFRADKEFLREPR---VVRVGLIQNSIVLPTTLHF-------LDQKKA----IFQKLKLLIDAAGVSGVNILC 135 (406)
Q Consensus 70 ~~~~~~~~~~~~~e~~~~~~---~vrValiQ~~i~~~~~~p~-------~~~~~~----n~~~i~~~i~~A~~~gvdLVv 135 (406)
..-+.|+.|.-......+|+ .-||++++..+..+..+.- ..+.+. -.+.+.++++.-.+.|+|+|+
T Consensus 4 S~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl 83 (178)
T 1gml_A 4 SCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVI 83 (178)
T ss_dssp CSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred cEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 44567777765544333443 4689999998876432210 012222 234556666777788999876
Q ss_pred ecCCCCCCCCCCcchhHHhhhcC--CCCcHHHHHHHHHHHhcCcEEEeece
Q 041243 136 LQEAWTMPFAFCTREKRWCEFAE--PVDGESTQFLQELARKYNMVIISPIL 184 (406)
Q Consensus 136 fPE~~l~g~~~~~~~~~~~~~ae--~~~~~~~~~l~~lAkk~~i~Iv~G~~ 184 (406)
-.-. +..++ ..+..-+. .+..--...+.++|+-.|..++..+-
T Consensus 84 ~~k~-I~d~a-----~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~ 128 (178)
T 1gml_A 84 TEKG-ISDLA-----QHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPE 128 (178)
T ss_dssp ESSC-BCHHH-----HHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGG
T ss_pred ECCc-ccHHH-----HHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChh
Confidence 5443 22111 11110000 01122346678888888888887653
No 67
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=23.83 E-value=35 Score=30.08 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHhhCCCeEEEecCCC
Q 041243 111 QKKAIFQKLKLLIDAAGVSGVNILCLQEAW 140 (406)
Q Consensus 111 ~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~ 140 (406)
+....++++.+.|+ +.++|||||+|..
T Consensus 18 ~~~~~~~~i~~~i~---~~~~DIi~LQEv~ 44 (266)
T 3teb_A 18 NQMEKIDILARTIA---EKQYDVIAMQEVN 44 (266)
T ss_dssp THHHHHHHHHHHHH---HHTCSEEEEEEEE
T ss_pred chhHHHHHHHHHHH---hcCCCEEEEEEcc
Confidence 34445555555554 4589999999984
No 68
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=23.77 E-value=2.1e+02 Score=27.12 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=50.1
Q ss_pred CceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCC
Q 041243 242 FGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGT 308 (406)
Q Consensus 242 ~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~ 308 (406)
..++.++-+|=-..+++.+.+...|++=|+.-+.-.+.. +.|...+..+|++.++.||.+.+++.
T Consensus 215 ~~~V~il~~~pG~~~~~l~~~~~~g~~GiVle~~G~Gn~--p~~~~~~l~~a~~~gi~VV~~Sr~~~ 279 (330)
T 1wsa_A 215 LPRVDILYAHPDDTDVLVNAALQAGAKGIIHAGMGNGNP--FPLTQNALEKAAKSGVVVARSSRVGS 279 (330)
T ss_dssp CCCEEEEECCSSCCSHHHHHHHHTTCSEEEEEEBTTTBC--CHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCceEEEEeCCCCCHHHHHHHHhCCCCEEEEeeECCCCC--CHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 468999999999999999888889999888765433332 34444455578899999999999865
No 69
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=22.69 E-value=2.3e+02 Score=26.86 Aligned_cols=65 Identities=18% Similarity=0.110 Sum_probs=50.2
Q ss_pred CceEEEEeccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCC
Q 041243 242 FGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGT 308 (406)
Q Consensus 242 ~gkigv~ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~ 308 (406)
..++.++-+|=-..+++.+.+...|++=|+.-+.-.+.. +.|...+..+|++.++.||.+.+++.
T Consensus 211 ~~~V~il~~~pG~~~~~l~~~~~~g~~GiVl~~~G~Gn~--p~~~~~~l~~a~~~gi~VV~~Sr~~~ 275 (326)
T 1nns_A 211 LPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNL--YKSVFDTLATAAKTGTAVVRSSRVPT 275 (326)
T ss_dssp CCCEEEEECCTTCCSHHHHHHHHTTCSEEEEEEBTTTBC--CHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCceEEEEeCCCCCHHHHHHHHhCCCCEEEEeeECCCCC--CHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 468999999998899999888889999888865433333 24444555578899999999999865
No 70
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=22.46 E-value=2.2e+02 Score=27.21 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=50.5
Q ss_pred CceEEEEeccCC-cchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCC
Q 041243 242 FGKIAVNICYGR-HHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGT 308 (406)
Q Consensus 242 ~gkigv~ICyD~-~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~ 308 (406)
..++.++-+|-- ..+++.+.+...|++=|+.-+.-.+.. +.|...+..+|++.++.||.+.+++.
T Consensus 220 ~~~V~il~~~pG~~~~~~l~a~~~~g~~GiVle~~G~Gn~--p~~~~~~l~~a~~~Gi~VV~~Src~~ 285 (334)
T 3nxk_A 220 LPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSI--HKNQKDVLKELLKKGLKVVVSSRVVA 285 (334)
T ss_dssp CCCEEEEECCTTCCHHHHHHHHHHTTCCEEEEEEBTTTBC--CHHHHHHHHHHHTTTCEEEEEESSSB
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHhCCCCEEEEeeECCCCC--cHHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 458999999998 889999888889999988865433333 34555555678899999999998865
No 71
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=22.04 E-value=47 Score=29.77 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=14.2
Q ss_pred HHHHHhhCCCeEEEecCCC
Q 041243 122 LIDAAGVSGVNILCLQEAW 140 (406)
Q Consensus 122 ~i~~A~~~gvdLVvfPE~~ 140 (406)
+++...+.++||||++|..
T Consensus 25 l~~~l~~~~~DIl~LQEt~ 43 (240)
T 2ei9_A 25 LPSIARDLGLDIVLVQEQY 43 (240)
T ss_dssp HHHHHHHHTCSEEEEESCC
T ss_pred HHHHHHHcCCCEEEeecce
Confidence 4444456789999999974
No 72
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=21.83 E-value=86 Score=28.01 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=13.0
Q ss_pred hhCCCeEEEecCCCCC
Q 041243 127 GVSGVNILCLQEAWTM 142 (406)
Q Consensus 127 ~~~gvdLVvfPE~~l~ 142 (406)
.+.++|||||+|....
T Consensus 52 ~~~~~DIi~LQE~~~~ 67 (285)
T 2o3h_A 52 KEEAPDILCLQETKCS 67 (285)
T ss_dssp HHHCCSEEEEECCCCC
T ss_pred HhcCCCEEEEEEeecc
Confidence 4568999999998654
No 73
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=21.74 E-value=1.2e+02 Score=30.65 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCCCcHHHHHHHHHHHhcCcEEEee
Q 041243 118 KLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISP 182 (406)
Q Consensus 118 ~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~~~~~~~~l~~lAkk~~i~Iv~G 182 (406)
.+...++.|.+.|+.+||+.+- |. ....+.+.+.|++++|-|+++
T Consensus 48 ~v~~~v~e~~~~Gv~~viis~G----f~----------------~~~~~~l~~~A~~~g~rliGP 92 (480)
T 3dmy_A 48 YAAELANQALDRNLNVMMFSDN----VT----------------LEDEIQLKTRAREKGLLVMGP 92 (480)
T ss_dssp HHHHHHHHHHHTTCEEEECCCC----CC----------------HHHHHHHHHHHHHTTCCEECS
T ss_pred HHHHHHHHHHhcCCCEEEECCC----CC----------------HHHHHHHHHHHHHcCCEEEec
Confidence 5667778888899998887654 42 124567999999999999975
No 74
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=21.73 E-value=2.6e+02 Score=26.60 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCC--C-cchhHHhhhcCCCCcHHHHHHHHHHHhcC--cEEEe
Q 041243 110 DQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAF--C-TREKRWCEFAEPVDGESTQFLQELARKYN--MVIIS 181 (406)
Q Consensus 110 ~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~--~-~~~~~~~~~ae~~~~~~~~~l~~lAkk~~--i~Iv~ 181 (406)
..++..++.+.+.++.|+.-|++.|++.=.. .|+.+ . ..+..|..++ +.++.+.+.|+++| +.+..
T Consensus 109 ~~r~~~i~~~~~~i~~A~~LGa~~vvv~~g~-~~~~~~~~~~~~~~~~~~~-----e~L~~l~~~A~~~G~~v~l~l 179 (386)
T 1muw_A 109 DVRRYALRKTIRNIDLAVELGAKTYVAWGGR-EGAESGAAKDVRVALDRMK-----EAFDLLGEYVTSQGYDIRFAI 179 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEEECCTT-CEESSTTSCCHHHHHHHHH-----HHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEECCCC-CcccccccCCHHHHHHHHH-----HHHHHHHHHHHhcCCCeEEEE
Confidence 4577888999999999999999988763111 11110 1 1112233332 35677778888888 76544
No 75
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=21.01 E-value=68 Score=27.90 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=15.5
Q ss_pred HHHHHHhhCCCeEEEecCCCC
Q 041243 121 LLIDAAGVSGVNILCLQEAWT 141 (406)
Q Consensus 121 ~~i~~A~~~gvdLVvfPE~~l 141 (406)
++.+...+.++|||||+|...
T Consensus 17 ~i~~~i~~~~~DIv~LQE~~~ 37 (256)
T 2jc4_A 17 QVQNLLADNPPDILVLQELKL 37 (256)
T ss_dssp HHHHHHHSSCCSEEEEECCCS
T ss_pred HHHHHHHhcCCCEEEEEeecc
Confidence 344444568999999999855
No 76
>2knj_A Microplusin preprotein; antimicrobial peptide, rhipicephalus (boophilus) microplus, antimicrobial protein; NMR {Rhipicephalus microplus}
Probab=20.20 E-value=23 Score=27.50 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCCccccHHHHHHcCCCchhHhhhhhhhcc
Q 041243 17 SICGYDSLHTLLSANLKPHIYQEVSRLLHG 46 (406)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (406)
.+++-+.++..|.++++++|++|+.++.-.
T Consensus 50 KLC~~~dl~~~L~~~Ft~~e~~e~h~la~~ 79 (90)
T 2knj_A 50 KMCATNNLEQAMSVYFTNEQIKEIHDAATA 79 (90)
T ss_dssp HHHHHCSTHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCCHhHHHHHHCCHHHHHHHHHHHHh
Confidence 466778899999999999999999988655
Done!