BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041244
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 115/486 (23%), Positives = 193/486 (39%), Gaps = 79/486 (16%)
Query: 187 DIIIDALPSVTVNDLNEIAKRMVSAGFGKECSHVYSSCRREFLEESMSRLGLQKLSIEEV 246
D++++ LP + D+ I++ +V G ++ +VY R L+ S+ L
Sbjct: 103 DVVLEHLPESVLRDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSS 162
Query: 247 QKMPWQEVEEQIDRWVKATNVALRILFPSERRL----------CDRVFFGFSSAADLSFM 296
+P+ I K T I P + C F + + M
Sbjct: 163 SGVPYSPA---IPNKRKDTPTKKPIKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYRLLM 219
Query: 297 EVCR--------GSTIQ------LLNFADAIAIGSRSPER--LFKVLDVFETLRDLM--- 337
E+ S IQ +L + ++ ++ R VL VF LR L
Sbjct: 220 EIIPEHHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTK 279
Query: 338 PEFEAVFSDQYCLLLRNEAVTIWKRLGEAIRGIFMELENL-----------IRRDPAKAA 386
PEF+ V L+ A + +L G+ +E + I+ DP K
Sbjct: 280 PEFDQV--------LQGTAASTKNKLP----GLITSMETIGAKALEDFADNIKNDPDKEY 327
Query: 387 -VP-GGGLHPITRYVMNYLRAACRSTQTLEQVFEKD-------------SSSSLSVQMAW 431
+P G +H +T + +L+ +T + S LS +
Sbjct: 328 NMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSSSATSYSSEFSKRLLSTYICK 387
Query: 432 IMELLESNLEVKSKIYRDPALCSVFMMNNGRYIVQKVNDNELGSLLG---DDWIRKHNAK 488
++ L+ NL KSK+Y DPAL ++F+ NN YI++ + +EL L+ R +
Sbjct: 388 VLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREH 447
Query: 489 VRQYHSNYQRSSWNKVFGVLKIDNIXX----XXXXXXXXRSLKEKLKLFYSYFDETCKTQ 544
+ Q YQR SW KV + N+ + +KE+ K F +E CK Q
Sbjct: 448 IEQQIQTYQR-SWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQ 506
Query: 545 SSWVVFDEQLREELKIAITKLLLPAYGNFIVKFQNSPDICKHPERLIKYTVEDVEAQIDE 604
W + D + R++++ A ++ YG F+ ++ + P K+PE+ IKY VE V ID
Sbjct: 507 KVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVP-FTKNPEKYIKYRVEQVGDMIDR 565
Query: 605 LFQGTG 610
LF +
Sbjct: 566 LFDTSA 571
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 456 FMMNNGRYIVQKVNDNELGSLL-GDDWIRKHNAKVRQYHSNYQRSSWNKVFGVLKIDN-- 512
F++ N + Q V +EL +L G+ R K R + +Y S W + L +D+
Sbjct: 415 FILMNLTLVEQIVEKSELNLMLAGEGHSRLERLKKR--YISYMVSDWRDLTANL-MDSVF 471
Query: 513 IXXXXXXXXXXRSLKEKLKLFYSYFDETCKTQSSWVVFDEQLREELKIAITKLLLPAYGN 572
I +KEK + F F++ + + D L+ LK I L++P Y
Sbjct: 472 IDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYER 531
Query: 573 FIVKFQNSPDICKHPERLIKYTVEDVEAQIDEL 605
F ++++S K+P + IKYT +++ +++L
Sbjct: 532 FYSRYKDS---FKNPRKHIKYTPDELTTVLNQL 561
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 456 FMMNNGRYIVQKVNDNELGSLL-GDDWIRKHNAKVRQYHSNYQRSSWNKVFGVLKIDN-- 512
F++ N + Q V +EL +L G+ R K R + +Y S W + L +D+
Sbjct: 416 FILMNLTLVEQIVEKSELNLMLAGEGHSRLERLKKR--YISYMVSDWRDLTANL-MDSVF 472
Query: 513 IXXXXXXXXXXRSLKEKLKLFYSYFDETCKTQSSWVVFDEQLREELKIAITKLLLPAYGN 572
I +KEK + F F++ + + D L+ LK I L++P Y
Sbjct: 473 IDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYER 532
Query: 573 FIVKFQNSPDICKHPERLIKYTVEDVEAQIDEL 605
F ++++S K+P + IKYT +++ +++L
Sbjct: 533 FYSRYKDS---FKNPRKHIKYTPDELTTVLNQL 562
>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
Length = 566
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 456 FMMNNGRYIVQKVNDNELG-SLLGDDWIRKHNAKVRQYHSNYQRSSWNKVFGVLKIDN-- 512
F++ N + Q V +EL L G+ R K R + +Y S W + L D+
Sbjct: 418 FILXNLTLVEQIVEKSELNLXLAGEGHSRLERLKKR--YISYXVSDWRDLTANLX-DSVF 474
Query: 513 IXXXXXXXXXXRSLKEKLKLFYSYFDETCKTQSSWVVFDEQLREELKIAITKLLLPAYGN 572
I +KEK + F F++ + + D L+ LK I L+ P Y
Sbjct: 475 IDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVXPXYER 534
Query: 573 FIVKFQNSPDICKHPERLIKYTVEDVEAQIDEL 605
F ++++S K+P + IKYT +++ +++L
Sbjct: 535 FYSRYKDS---FKNPRKHIKYTPDELTTVLNQL 564
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,533,357
Number of Sequences: 62578
Number of extensions: 616835
Number of successful extensions: 1421
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1414
Number of HSP's gapped (non-prelim): 9
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)