Query 041244
Match_columns 617
No_of_seqs 206 out of 507
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2344 Exocyst component prot 100.0 4E-109 8E-114 920.9 57.4 553 58-616 45-622 (623)
2 PF03081 Exo70: Exo70 exocyst 100.0 1.3E-76 2.9E-81 636.7 27.5 344 258-605 1-371 (371)
3 PF06419 COG6: Conserved oligo 99.3 1.8E-08 3.9E-13 115.0 39.2 517 7-602 34-618 (618)
4 KOG1961 Vacuolar sorting prote 98.6 7.3E-05 1.6E-09 81.4 31.6 379 19-470 83-550 (683)
5 KOG3758 Uncharacterized conser 98.6 0.00038 8.1E-09 76.5 35.8 512 8-602 68-651 (655)
6 PF04129 Vps52: Vps52 / Sac2 f 98.5 0.00018 4E-09 80.6 30.4 398 12-472 15-486 (508)
7 PF09763 Sec3_C: Exocyst compl 94.7 12 0.00026 44.1 40.8 210 356-575 439-693 (701)
8 PF04136 Sec34: Sec34-like fam 93.1 0.13 2.8E-06 48.6 4.7 92 51-142 54-150 (157)
9 KOG2604 Subunit of cis-Golgi t 60.8 3.2E+02 0.007 31.8 32.1 133 9-142 103-241 (733)
10 PF15264 TSSC4: Tumour suppres 52.1 5.3 0.00012 35.5 0.3 25 575-599 49-73 (115)
11 KOG1916 Nuclear protein, conta 51.3 65 0.0014 38.3 8.7 50 523-574 1014-1064(1283)
12 PHA01746 hypothetical protein 40.0 8.8 0.00019 33.4 -0.2 22 570-597 76-97 (131)
13 PF12210 Hrs_helical: Hepatocy 35.8 2.9E+02 0.0062 23.8 11.3 80 295-376 3-84 (96)
14 KOG4514 Uncharacterized conser 32.7 4.6E+02 0.01 25.3 10.0 22 189-210 118-139 (222)
15 KOG3821 Heparin sulfate cell s 32.4 87 0.0019 35.2 5.8 71 523-607 97-168 (563)
16 PF10191 COG7: Golgi complex c 30.0 1E+03 0.022 28.5 34.1 131 199-346 201-335 (766)
17 PF07393 Sec10: Exocyst comple 29.1 1E+03 0.022 28.1 23.0 100 199-308 129-243 (710)
18 COG2733 Predicted membrane pro 27.5 5.7E+02 0.012 27.8 10.6 90 492-604 290-383 (415)
19 PF10475 DUF2450: Protein of u 24.6 2.4E+02 0.0052 29.3 7.3 83 55-139 111-193 (291)
20 TIGR02553 SipD_IpaD_SspD type 22.9 3.5E+02 0.0077 28.3 7.9 34 476-511 116-149 (308)
21 PF08069 Ribosomal_S13_N: Ribo 21.6 84 0.0018 24.6 2.4 25 583-607 18-42 (60)
No 1
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-109 Score=920.94 Aligned_cols=553 Identities=42% Similarity=0.727 Sum_probs=484.7
Q ss_pred hHHHHHHHHHHHHhhhcCC--C----CC--cCCcccHHHHHHHHHHHHHHhhhhCCCCCCCchhhHHHHHHHHHHHHHHH
Q 041244 58 LEHCLKSLHRQISQYVASD--N----PI--WADSADSSAFLDSVDELISTIKDWSPMAGDKSINACLARADDLLQQSMFR 129 (617)
Q Consensus 58 Ie~~l~~~~~vi~~~~~~~--~----~i--~~~~~~~~~yL~av~~l~~~~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~ 129 (617)
++.++..+++++.+|..+- + .| +.++.++..|+++|++++.+++++......++.+-...++..+++.||.+
T Consensus 45 ~~~~i~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~e~~~~~~~v~~l~~~l~~l~s~~~~~~~~~~~~~~d~l~~~am~~ 124 (623)
T KOG2344|consen 45 KEATIEQAEEIIEKFLTALNLRSSSKIISFLESREEAKNFLSAVNTLQETLQFLVSQNGLQSSKLLKAQADSLLQIAMSR 124 (623)
T ss_pred HHhhhhhHHHHHHHHhhhcccchhhhhhhccCChHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHhHHHHHHHHHHH
Confidence 6888888999999998753 1 12 24578999999999999999998864333333333444544599999999
Q ss_pred HHHHHHHHHHhcCCCCCcccccc-CCCCCCCCCCCCCCCCCCCCCCCCCcccCC-CCCccccccCCChHHHHHHHHHHHH
Q 041244 130 LEEEFRSLMERGGDSFELCDSTT-ANLSFDDDDDDGNEDDSDDSDSNQIPVAQP-VNDYDIIIDALPSVTVNDLNEIAKR 207 (617)
Q Consensus 130 Le~eF~~lL~~~s~~~~p~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~L~~Ia~~ 207 (617)
||+||+++|..++.+++|..... ++....+.++. .....++....+...+ ..+....++.+|+.++.+|+.||++
T Consensus 125 le~EF~~il~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~dLk~Ia~~ 201 (623)
T KOG2344|consen 125 LEKEFRQILENNREELDPERLSVRLRSSLNSKDEE---ASLNSDSKYSALSDEESFGDDEIEPDLFPPDVMTDLKAIAQR 201 (623)
T ss_pred HHHHHHHHHHhcccccchHhhhhcccccccccccc---cccccCcccccccccccccCceeeccCCCchhHHHHHHHHHH
Confidence 99999999999999999742221 01000000000 0000111111211122 3445567899999999999999999
Q ss_pred HHhCCCchhHHHHHHHHhHHHHHHHHHhcCCcccchHHhhcCchHhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCC
Q 041244 208 MVSAGFGKECSHVYSSCRREFLEESMSRLGLQKLSIEEVQKMPWQEVEEQIDRWVKATNVALRILFPSERRLCDRVFFGF 287 (617)
Q Consensus 208 m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~ 287 (617)
|+++||.++|+++|..+|+.+++++|..||+++++++++++|+|+.++.+|++|++++++++++||++|+.||++||++.
T Consensus 202 mi~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ls~~~vq~~~we~le~~I~~Wi~~~kv~v~~lf~~E~~Lcd~If~~~ 281 (623)
T KOG2344|consen 202 MIAAGYEKECFKVYKSIRKSILDESLVNLGVEKLSIEDVQRMDWEVLEGKIKKWIKAVKVAVSVLFEGEKKLCDQIFSDL 281 (623)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHhcCeeeccHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcchhhHHHHHhHHHHHHHHhHHHHHhhcCCCchhhhhhhhHHHHHHhhhHhHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 041244 288 SSAADLSFMEVCRGSTIQLLNFADAIAIGSRSPERLFKVLDVFETLRDLMPEFEAVFSDQYCLLLRNEAVTIWKRLGEAI 367 (617)
Q Consensus 288 ~~~~~~~f~~i~~~~i~~ll~f~~~va~~~r~~~klf~lLdm~e~L~~l~p~~~~lf~~~~~~~~r~~~~~~l~~L~~~~ 367 (617)
.+....||.+|++.++.+|++|+++|+.++|+|+|+|++||||+++.+++|+++.+|++.+|+++|.++..++++|++++
T Consensus 282 ~~~~~~cF~eI~~~~~~~ll~F~eava~~kr~pEklf~iLd~y~~i~~l~p~ie~lF~~~~~s~vr~~~~~~~~rL~~~~ 361 (623)
T KOG2344|consen 282 ESIVESCFPEIVKEAALQLLSFPEAVAISKRSPEKLFKLLDLYETIVELRPDIERLFSDASCSEVRSQALSLLKRLGEGV 361 (623)
T ss_pred chHHHHHHHHHHHHHHHHhhccchheeeccCCHHHHHHHHHHHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHH
Confidence 65222899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCccccchHHHHHHHHHHHhcHHHHHHHHhhC---------------CCCcHHHHHHHH
Q 041244 368 RGIFMELENLIRRDPAKAAVPGGGLHPITRYVMNYLRAACRSTQTLEQVFEKD---------------SSSSLSVQMAWI 432 (617)
Q Consensus 368 ~~~f~e~~~~I~~~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~iL~~~---------------~~~~l~~~i~~i 432 (617)
+++|+||++.|+.|++++|+|||||||||+||||||+.|++|+++|.++|..+ ..++++.++.||
T Consensus 362 ~~~~~efe~~I~~d~sk~pv~gG~VHpLTryvmnyl~~L~dy~~tL~~il~~~~~~~~~~~~~~~~~~~~s~l~~~~~~i 441 (623)
T KOG2344|consen 362 RSIFVEFESAIRKDSSKTPVPGGGVHPLTRYVMNYLNFLADYKDTLEQLLMEDPVDTSLPKSESEDESSNSLLAVHIARI 441 (623)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCcChhHHHHHHHHHHHHHHHHHHHHHHhccccccccCcccccccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999863 347899999999
Q ss_pred HHHHHHHHHhhhhcCCCccchhhhhhhhHHHHHHhhcccchhhhhcchHHHHHHHHHHHHHHHHHHhhHHHHHhhhccCC
Q 041244 433 MELLESNLEVKSKIYRDPALCSVFMMNNGRYIVQKVNDNELGSLLGDDWIRKHNAKVRQYHSNYQRSSWNKVFGVLKIDN 512 (617)
Q Consensus 433 i~~L~~nLe~ksk~ykd~aL~~iFLmNN~~yI~~~v~~s~L~~lLg~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~ 512 (617)
|..|++||+.||+.|+|++|+|||||||+|||+++|++++|+.+||++|+++|..+++||++.|++++|++|+++|.+++
T Consensus 442 i~~L~~nLd~Ks~~Y~D~aL~~lFlmNN~~yiv~kvkss~L~~llGd~wl~kh~~~~~qy~~~Y~r~sW~~vl~~L~~~~ 521 (623)
T KOG2344|consen 442 ILALECNLDTKSKLYKDPALSYLFLMNNLHYIVQKVKSSELRLLLGDDWLRKHEEKLRQYATSYERESWGKVLSLLTDEG 521 (623)
T ss_pred HHHHHhhhHHHHhhccchhhHHHHHHhhHHHHHHHHhcchHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHHHhhccceEecCHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCCCCCCCCcccc
Q 041244 513 IPSAPSGAAGARSLKEKLKLFYSYFDETCKTQSSWVVFDEQLREELKIAITKLLLPAYGNFIVKFQNSPDICKHPERLIK 592 (617)
Q Consensus 513 ~~~~~~~~~~k~~iKekfk~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~vvpaY~~F~~ky~~~~~~~kn~~KyiK 592 (617)
.. .|+..+|+.+||||++||++|||+|++|++|+||||+||++||.+|+++|+|+|++||+||+... .+|||+||||
T Consensus 522 s~--~~~~~~~~~~Kerfk~FN~~FeEv~k~Qs~wvV~D~~Lr~eLk~si~~~v~P~Yr~F~~r~~~~~-~~k~~~kyik 598 (623)
T KOG2344|consen 522 SS--SGGKKSKEVLKERFKLFNEQFEEVYKKQSQWVVPDPKLREELKISISEKVVPAYRSFYGRYRNSV-SGKNPEKYIK 598 (623)
T ss_pred cc--cccccCHHHHHHHHHHHHHHHHHHHHhhCceecccHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCCcccc
Confidence 43 22223599999999999999999999999999999999999999999999999999999999877 5999999999
Q ss_pred cCHHHHHHHHHHhhcCCCCCCCCC
Q 041244 593 YTVEDVEAQIDELFQGTGASAGGK 616 (617)
Q Consensus 593 Ytpe~le~~L~~LF~g~~~~~~~~ 616 (617)
|||+|||++|++||+|++.+..+|
T Consensus 599 YtpedlE~~L~dLF~g~~~~~s~~ 622 (623)
T KOG2344|consen 599 YTPEDLENYLSDLFEGSPSSPSGR 622 (623)
T ss_pred cCHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999555444
No 2
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=100.00 E-value=1.3e-76 Score=636.69 Aligned_cols=344 Identities=47% Similarity=0.759 Sum_probs=310.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhccCCCcchhhHHHHHhHHHHHHHHhHHHHHh---hcCCCchhhhhhhhHHHHHH
Q 041244 258 IDRWVKATNVALRILFPSERRLCDRVFFGFSSAADLSFMEVCRGSTIQLLNFADAIA---IGSRSPERLFKVLDVFETLR 334 (617)
Q Consensus 258 i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~va---~~~r~~~klf~lLdm~e~L~ 334 (617)
|++|+.++.+++++|+++|++||++||+...+.+..||.+++++++..|++||++|+ ...++|+++|.+||||++|.
T Consensus 1 ~~~wi~~~~~~~~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll~~~~~v~~~~~~~~~~~~lf~ll~~~~~l~ 80 (371)
T PF03081_consen 1 IKRWIQAYKVALKKLFQSERRLCDQVFPESSSIADECFAEIAKPPLLQLLNFADAVASVRNSQRSPEKLFELLDMYEALS 80 (371)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHSSCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHTCCCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998777899999999999999999999999 88899999999999999999
Q ss_pred hhhHhHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCccCCCCccccchHHHHHHHHHHHhcHHH
Q 041244 335 DLMPEFEAVFSDQYCLLLRNEAVTIWKRLGEAIRGIFMELENLIRR--DPAKAAVPGGGLHPITRYVMNYLRAACRSTQT 412 (617)
Q Consensus 335 ~l~p~~~~lf~~~~~~~~r~~~~~~l~~L~~~~~~~f~e~~~~I~~--~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y~~~ 412 (617)
++.|+++.+|.|.++..++.++.+++++|+++++++|.+|.+.|+. ++.+.+|+||||||+|++|||||+.|++|+++
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~~~~i~~~~~~~~~~p~dg~Vh~lT~~vm~yl~~L~~y~~~ 160 (371)
T PF03081_consen 81 ELLPDLDSLFSGESCESIRQEFDELLKKLREAIRKILEEFEESIKNDSDSSSSVPSDGGVHPLTSYVMNYLKRLAEYRDT 160 (371)
T ss_dssp HHHCCCHHCTCC-S-HHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGCS-TTS---HHHHHHHHHHHHHHCTHHH
T ss_pred HHhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999899999999999999999999999999999999 77778889999999999999999999999999
Q ss_pred HHHHHhhC--------------------CCCcHHHHHHHHHHHHHHHHHhhhhcCCCccchhhhhhhhHHHHHHhhcccc
Q 041244 413 LEQVFEKD--------------------SSSSLSVQMAWIMELLESNLEVKSKIYRDPALCSVFMMNNGRYIVQKVNDNE 472 (617)
Q Consensus 413 l~~iL~~~--------------------~~~~l~~~i~~ii~~L~~nLe~ksk~ykd~aL~~iFLmNN~~yI~~~v~~s~ 472 (617)
++.+|... +.++++.++.++|++|+.|||+||+.|+|++|++||||||+|||.+++++|+
T Consensus 161 l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ks~~y~d~~l~~iFLlNN~~yI~~~~~~s~ 240 (371)
T PF03081_consen 161 LESILQSDGDGNWLSESGPPSESSSSTDSQSSLSSYIADIISALESNLEAKSKSYKDPALRYIFLLNNYHYILKKLKRSE 240 (371)
T ss_dssp HHHCCCTT-GGGGS-SS--GGGS---CCHHHHHHHHHHHHHHHHHHHHHHHHCCHCTHHHHHHHHHHHHHHHHCCCCTSH
T ss_pred HHHHHHhccccccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999853 1256899999999999999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHhhHHHHHhhhccCCCCCCCCCc--cchhhHHHHHHHHHHHHHHHHhhccceEec
Q 041244 473 LGSLLGDDWIRKHNAKVRQYHSNYQRSSWNKVFGVLKIDNIPSAPSGA--AGARSLKEKLKLFYSYFDETCKTQSSWVVF 550 (617)
Q Consensus 473 L~~lLg~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~--~~k~~iKekfk~FN~~Fee~~~~q~~w~Vp 550 (617)
|..++|++|.+++.+++++|++.|++++|+||+++|.+++... .++. .+|+.+|+||++||++|||+|+.|+.|+||
T Consensus 241 l~~~lg~~~~~~~~~~~~~~~~~Y~~~sW~~v~~~L~~~~~~~-~~~~~~~~~~~~ke~f~~Fn~~fee~~~~q~~~~vp 319 (371)
T PF03081_consen 241 LKDLLGDDWEQRLSSKIEQYIKSYLRSSWGPVLSCLSDDSSSS-GGKLSSKERELLKEKFKKFNSAFEEIYKAQKTWKVP 319 (371)
T ss_dssp HHHCCTTCHHHHHHHHHHHHHHHHHCHHHHHHHCTCCHHCC-T--SSS-HHHHHHHHHHHHHHHHHHHHHHHHHTT---S
T ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cCCCCCccHHHHHHHHHHHHHHHHHHHHcCcceecC
Confidence 9999999999999999999999999988999999999863221 1121 268999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCCCCCCCCcccccCHHHHHHHHHHh
Q 041244 551 DEQLREELKIAITKLLLPAYGNFIVKFQNSPDICKHPERLIKYTVEDVEAQIDEL 605 (617)
Q Consensus 551 D~~LR~~Lr~~i~~~vvpaY~~F~~ky~~~~~~~kn~~KyiKYtpe~le~~L~~L 605 (617)
||+||++||++|+++|+|+|++||+||+... | ||+|||||||++||++|++|
T Consensus 320 D~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~~-~--~~~Kyikyt~~~le~~l~~L 371 (371)
T PF03081_consen 320 DPELREELRREIKEKVVPAYRRFYERYRNSQ-F--NPEKYIKYTPEDLENMLNEL 371 (371)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-S--SHCCC-SS-HHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c--CCCCCCccCHHHHHHHHHcC
Confidence 9999999999999999999999999999885 4 99999999999999999986
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=99.31 E-value=1.8e-08 Score=115.01 Aligned_cols=517 Identities=13% Similarity=0.148 Sum_probs=286.3
Q ss_pred HHHHHHHHHHHHhhccChhhhHHHHHHHhhhcccccccCcc--------CCCCCCCCcchHHHHHHHHHHHHhhhcCCC-
Q 041244 7 EKLLAVARHIARTLGHNDDTMADDILQIFSNFDGRFSREKM--------TDDDPRPCAPLEHCLKSLHRQISQYVASDN- 77 (617)
Q Consensus 7 ~~~~a~~~~l~~~L~ks~~~lt~~m~~iL~~~~~rl~~~~~--------~~~~~~~~~nIe~~l~~~~~vi~~~~~~~~- 77 (617)
..++.+-+-+.+.|.+-. +.=+.|...++...+++...+. +..+....+.++.--..+...+.+|--.+.
T Consensus 34 ~~~L~~f~~v~~~l~~~~-~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E 112 (618)
T PF06419_consen 34 QEFLKEFSPVNRQLKRLQ-SDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEE 112 (618)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 346666677777777777 7777777777777777666441 123333455667777777777888876522
Q ss_pred --CCcCCccc-HHHHHHHHHHHHHHhhhhCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 041244 78 --PIWADSAD-SSAFLDSVDELISTIKDWSP---MAGDKSINACLARADDLLQQSMFRLEEEFRSLMERGGDSFELCDST 151 (617)
Q Consensus 78 --~i~~~~~~-~~~yL~av~~l~~~~~~l~~---~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s~~~~p~~~~ 151 (617)
.+.++..+ -+.|..+++|+++.-+.=+. ....+..-+.+..+...++.|..||=....+-.+...
T Consensus 113 ~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~~~~~e~a~erl~~w~q~e~~~l~--------- 183 (618)
T PF06419_consen 113 EDALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTENQRAGLEIMEQMSKYLERAYERLYRWVQRECRSLN--------- 183 (618)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------
Confidence 23344233 36899999999887765442 2233344566778888888888887555433222210
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCccccccCCChHHHHHHHHHHHHHHhCCCchhHHHHHHHHhHHHHH-
Q 041244 152 TANLSFDDDDDDGNEDDSDDSDSNQIPVAQPVNDYDIIIDALPSVTVNDLNEIAKRMVSAGFGKECSHVYSSCRREFLE- 230 (617)
Q Consensus 152 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~- 230 (617)
.+ -+..++..-.-|+.+.++. .+.+.|++.|+..|+..|.
T Consensus 184 --------~~----------------------------~~~~~~~l~~al~~L~~rp---~lf~~~l~~~~~~R~~~l~~ 224 (618)
T PF06419_consen 184 --------LD----------------------------NPEVSPLLRRALRYLRERP---VLFNYCLDEFAEARSKALLR 224 (618)
T ss_pred --------hc----------------------------CcccchHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHHH
Confidence 00 0001122223333333332 3458999999999998875
Q ss_pred HHHHhcCCcc------cchHHhhcCchHhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCc-c-------------
Q 041244 231 ESMSRLGLQK------LSIEEVQKMPWQEVEEQIDRWVKATNVALRILFPSERRLCDRVFFGFSS-A------------- 290 (617)
Q Consensus 231 ~sL~~L~~~~------~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~-~------------- 290 (617)
+.+..|.... .+|+-- .-+--.-=+.+=.|++. ..++|+.++..+|..... .
T Consensus 225 ~F~~aLt~g~~~~~~~rPIel~-AhDP~RYvGDmLAwvHq-------~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~ 296 (618)
T PF06419_consen 225 RFLDALTRGGPGGSPSRPIELH-AHDPLRYVGDMLAWVHQ-------AIASEREFLESLFKFDEDEIAEGSSSGFDSNPW 296 (618)
T ss_pred HHHHHHcCCCCCCCCCCchhhh-ccChHHHHHHHHHHHHH-------HhhhHHHHHHHHhcccccccccccccccccccc
Confidence 4555563222 223221 11111112335667765 458999999999975321 0
Q ss_pred ----hhhHHHHHhHHHHHHHHhHHHHHhhcCCCc---hhhhhhhhHHHHHHhhhHhHHHhhchhhHHHHHHHHHHHHHHH
Q 041244 291 ----ADLSFMEVCRGSTIQLLNFADAIAIGSRSP---ERLFKVLDVFETLRDLMPEFEAVFSDQYCLLLRNEAVTIWKRL 363 (617)
Q Consensus 291 ----~~~~f~~i~~~~i~~ll~f~~~va~~~r~~---~klf~lLdm~e~L~~l~p~~~~lf~~~~~~~~r~~~~~~l~~L 363 (617)
...+...+..+...-+-.-.+.|-.+...| -+++.+|..|... |..+++..+ .+...+..|
T Consensus 297 ~~~~~~~lld~i~~~l~rplk~RvEQvi~se~~~i~~yki~~LL~fY~~~------~~k~i~~~s------~L~~tl~~L 364 (618)
T PF06419_consen 297 SEELINELLDRILEGLCRPLKIRVEQVISSEEDPITLYKIANLLSFYQMT------FSKLIGEDS------SLIETLKEL 364 (618)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH------HHHHcCCCc------hHHHHHHHH
Confidence 011222222211111112233333333444 3567777777543 333333221 234455566
Q ss_pred HHHHHHHH----HHHHHHHhcCCCCccCCCCccccchHHHHHHHHHHHh-cHHHHHHHHhhCCC--CcHHHHHHHHHHHH
Q 041244 364 GEAIRGIF----MELENLIRRDPAKAAVPGGGLHPITRYVMNYLRAACR-STQTLEQVFEKDSS--SSLSVQMAWIMELL 436 (617)
Q Consensus 364 ~~~~~~~f----~e~~~~I~~~~~~~~~~dg~Vh~lT~~vm~yl~~L~~-y~~~l~~iL~~~~~--~~l~~~i~~ii~~L 436 (617)
.+.+.+.| ......+.......|++|=..++-....++-|+.+.+ |..++... +... ..+...+..+|+-+
T Consensus 365 ~~~a~~~f~~~l~~~~~~l~~~~~~~~~~DL~PP~~l~d~l~~L~~il~~~~~s~~~~--~~~~~~~~~~~Il~~~idpl 442 (618)
T PF06419_consen 365 QDLAQKKFFSSLRDHVAKLLRSAPEPPPADLSPPEWLIDFLSLLREILDVYDSSLSPD--DDRENDNDFKPILDEPIDPL 442 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCc--cchhhhhHHHHHHHHHhHHH
Confidence 66555554 3444455554233455576666666665555555543 33222211 1122 55677777788877
Q ss_pred HHHHHhhhhcCCCccchhhhhhhhHHHHHHhhcccchhhhhcchHHHHHHHHHHHHHH--------HHH-HhhHHHHHhh
Q 041244 437 ESNLEVKSKIYRDPALCSVFMMNNGRYIVQKVNDNELGSLLGDDWIRKHNAKVRQYHS--------NYQ-RSSWNKVFGV 507 (617)
Q Consensus 437 ~~nLe~ksk~ykd~aL~~iFLmNN~~yI~~~v~~s~L~~lLg~~w~~~~~~~~~~~~~--------~Y~-~~sW~~vl~~ 507 (617)
....+.-+....++.-..||++|...+|...+..-+.. .+|......+++.+.. .++ +..-+++...
T Consensus 443 l~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L~~~~~~----~~~~e~L~~~id~~~~~Lv~~Q~~~lL~~sGL~~~~~~ 518 (618)
T PF06419_consen 443 LQMCQKSASPLAPKDDRAIFMINCLDLIQSTLSPFEFT----SERVEELQDQIDAHVDTLVEEQASFLLERSGLGDLYNA 518 (618)
T ss_pred HHHHHHHhhccCChhhhHHHHHHhHHHHHHHccChHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 77777777767666667999999999999888753321 2444444444443332 222 2233455555
Q ss_pred hc----cCCCCCC---CCCccchhhHHHHHHHHHHHHHHH-Hhhcc-ceEecCHHHHHHHHHHHHhhhhhhHHHHHHHhc
Q 041244 508 LK----IDNIPSA---PSGAAGARSLKEKLKLFYSYFDET-CKTQS-SWVVFDEQLREELKIAITKLLLPAYGNFIVKFQ 578 (617)
Q Consensus 508 L~----~~~~~~~---~~~~~~k~~iKekfk~FN~~Fee~-~~~q~-~w~VpD~~LR~~Lr~~i~~~vvpaY~~F~~ky~ 578 (617)
+. +.....+ ..+. +...++.-...|+.-+--. .-.|. --.+.+|.+|+.++......++-+|..||+...
T Consensus 519 l~~i~~~~~~~~pls~~p~~-~~~~l~~a~~kld~fL~sa~~d~~~~L~~L~Sp~l~~~I~~~a~~~f~~~Y~~v~~~v~ 597 (618)
T PF06419_consen 519 LNMIFFDYDMYGPLSENPGM-DPDSLSNALQKLDDFLPSALTDAQPNLFKLQSPKLRDDIRERAFERFCKAYEKVYEAVM 597 (618)
T ss_pred HHhhccCCcccCCcccCccC-CHHHHHHHHHHHHHHHcccchhhhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 2111111 1111 3455554444444443221 12222 245789999999999999999999999999887
Q ss_pred CCCCCCCCCCcccccCHHHHHHHH
Q 041244 579 NSPDICKHPERLIKYTVEDVEAQI 602 (617)
Q Consensus 579 ~~~~~~kn~~KyiKYtpe~le~~L 602 (617)
+.. .+-+.-..+||++|..+|
T Consensus 598 d~~---n~y~sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 598 DPD---NGYESLFPRTPEEIRTLL 618 (618)
T ss_pred Chh---cccccccCCCHHHHhhcC
Confidence 532 111135678999998764
No 4
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.65 E-value=7.3e-05 Score=81.42 Aligned_cols=379 Identities=14% Similarity=0.160 Sum_probs=202.2
Q ss_pred hhccChhhhHHHHHHHhhhcccccccCcc-CCCCCCCCcchHHHHH---HHHHHHHhhhc----CCC---CCcCCcccHH
Q 041244 19 TLGHNDDTMADDILQIFSNFDGRFSREKM-TDDDPRPCAPLEHCLK---SLHRQISQYVA----SDN---PIWADSADSS 87 (617)
Q Consensus 19 ~L~ks~~~lt~~m~~iL~~~~~rl~~~~~-~~~~~~~~~nIe~~l~---~~~~vi~~~~~----~~~---~i~~~~~~~~ 87 (617)
.+..-+ .+-.+|...|++|..+|+.+.. ...++.....|...|+ +++..++++-. ... .|.+|+.+-.
T Consensus 83 qi~~cd-~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~ 161 (683)
T KOG1961|consen 83 QIRACD-SVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEP 161 (683)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCch
Confidence 344445 7888999999999999998761 1222222222333332 23333344332 222 2567788888
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCCCCCCCCC
Q 041244 88 AFLDSVDELISTIKDWSPMAGDK---SINACLARADDLLQQSMFRLEEEFRSLMERGGDSFELCDSTTANLSFDDDDDDG 164 (617)
Q Consensus 88 ~yL~av~~l~~~~~~l~~~~~~~---~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s~~~~p~~~~~~~~~~~s~~~~~ 164 (617)
.|++++++|..-+...+-=++++ +.+..-.-++.|-.+|+.|.-+..-.-+..-++|+.-
T Consensus 162 ~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~~fRkp~tn----------------- 224 (683)
T KOG1961|consen 162 EFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIKAFRKPMTN----------------- 224 (683)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----------------
Confidence 99999999988776443112222 2233334556777789988888877777777765221
Q ss_pred CCCCCCCCCCCCCcccCCCCCccccccCCC-hHHHHHHHHHHHHHHhCCC--chhHHHHHHHHhHHHHH----H---HHH
Q 041244 165 NEDDSDDSDSNQIPVAQPVNDYDIIIDALP-SVTVNDLNEIAKRMVSAGF--GKECSHVYSSCRREFLE----E---SMS 234 (617)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~L~~Ia~~m~~~g~--~~~~~~~Y~~~R~~~l~----~---sL~ 234 (617)
..+| ..++=.-+-+..++...+. ..|..++|++.=+.+.. . .|.
T Consensus 225 --------------------------~qi~~Q~~LLK~k~~y~FL~~n~r~~A~Elr~aYIdTM~k~y~~yF~sY~~~L~ 278 (683)
T KOG1961|consen 225 --------------------------YQIPQQHALLKYKFFYEFLLENNRELALELRDAYIDTMNKIYLSYFKSYIRRLT 278 (683)
T ss_pred --------------------------cchHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233 5666777778888877764 34666677664333221 1 122
Q ss_pred hcCCccc-------------chHH---hhcC-----------------------------c------hHhhHHHHHHHHH
Q 041244 235 RLGLQKL-------------SIEE---VQKM-----------------------------P------WQEVEEQIDRWVK 263 (617)
Q Consensus 235 ~L~~~~~-------------~~~~---~~~~-----------------------------~------~~~~~~~i~~w~~ 263 (617)
.|.++.+ +..- ..+. | -.-.|..+..|-.
T Consensus 279 klq~~~iat~~D~~Gi~fn~skGl~~~fsk~~~~l~~r~tvF~ig~R~~Iltq~d~p~lvphiae~~k~~~E~lfrs~~~ 358 (683)
T KOG1961|consen 279 KLQFEEIATKEDLMGIEFNASKGLFFFFSKLPEPLKNRSTVFTIGKRLQILTQLDAPILVPHIAEANKYYIEALFRSLHL 358 (683)
T ss_pred HHHHHHHhccccccccccccCccHHHHhccCcchhhcccceeehhhhhhhhhhccccchhhhHHhcCCCcHHHHHHHHHH
Confidence 2211100 0000 0000 0 0012344555554
Q ss_pred HHHHHHHHhhHHHHHHhhhhccCCCcchhhHHHHHhHHHHHHHHhHHHHHhhcCCCchhhhhhhhHHHHHH---------
Q 041244 264 ATNVALRILFPSERRLCDRVFFGFSSAADLSFMEVCRGSTIQLLNFADAIAIGSRSPERLFKVLDVFETLR--------- 334 (617)
Q Consensus 264 ~~~~~v~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~va~~~r~~~klf~lLdm~e~L~--------- 334 (617)
++. -=..+||-.|..-|.-.++....+|.+|..+++...+..-+.+ +..++....|+-+++
T Consensus 359 al~----dn~tsEYlFl~efF~~~gd~~~~if~aIf~~tls~~~k~~~~~------Is~~~DaIgvll~Iri~~k~ql~~ 428 (683)
T KOG1961|consen 359 ALL----DNATSEYLFLEEFFAVSGDQAEDIFYAIFGKTLSVILKYLESL------ISDCYDAIGVLLCIRIIHKLQLIA 428 (683)
T ss_pred HHH----hcchhHHHHHHHHHhhcCchHHHHHHHHhcccHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 2246899999999965555667788888777766555533322 111222222222221
Q ss_pred --hhhHhHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCccC-CCCccccchHHHHHHHHHHHhcH
Q 041244 335 --DLMPEFEAVFSDQYCLLLRNEAVTIWKRLGEAIRGIFMELENLIRR-DPAKAAV-PGGGLHPITRYVMNYLRAACRST 410 (617)
Q Consensus 335 --~l~p~~~~lf~~~~~~~~r~~~~~~l~~L~~~~~~~f~e~~~~I~~-~~~~~~~-~dg~Vh~lT~~vm~yl~~L~~y~ 410 (617)
...|.++.-..+. ...+=.+|..++..= .+.++. +.++.+- +|.+.|++|+-.-.++..+.
T Consensus 429 ~rR~VP~ld~y~n~v-~~~LWPRFq~V~d~h-----------~eSlR~~di~~~~~~~d~rPHyitrRyAEf~ss~~--- 493 (683)
T KOG1961|consen 429 ARRRVPALDSYWNSV-LIFLWPRFQLVMDMH-----------CESLRKADITTLWEKLDTRPHYITRRYAEFLSSFL--- 493 (683)
T ss_pred HhcCCcchhhHHHHH-HHHHHHHHHHHHHHH-----------HHHHHhcChhhcccccCCCchHHHHHHHHHHHHHH---
Confidence 1123222211110 000111111111111 122222 2222222 68999999986554444433
Q ss_pred HHHHHHHhhCCCC-cHHHHHHHHHHHHHHHHHhhhhcCCCccchhhhhhhhHHHHHHhhcc
Q 041244 411 QTLEQVFEKDSSS-SLSVQMAWIMELLESNLEVKSKIYRDPALCSVFMMNNGRYIVQKVND 470 (617)
Q Consensus 411 ~~l~~iL~~~~~~-~l~~~i~~ii~~L~~nLe~ksk~ykd~aL~~iFLmNN~~yI~~~v~~ 470 (617)
.+=...++. ++......+....++-+..-++.++++--+.+||.||+-+|..-+..
T Consensus 494 ----~l~v~~~~~~~~~~ll~~l~~~ve~fl~rmak~~~~~K~q~vFLiNNYdlil~vL~e 550 (683)
T KOG1961|consen 494 ----MLNVTYGNEQDVERLLERLQMEVESFLLRMAKLFPTRKQQLVFLINNYDLILGVLME 550 (683)
T ss_pred ----HHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeccHHHHHHHHHh
Confidence 222222222 25556666666677777788889999999999999999999987764
No 5
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=0.00038 Score=76.50 Aligned_cols=512 Identities=15% Similarity=0.166 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHhhccChhhhHHHHHHHhhhcccccccCccC--------CCCCCCCcchHHHHHHHHHHHHhhhcCCC--
Q 041244 8 KLLAVARHIARTLGHNDDTMADDILQIFSNFDGRFSREKMT--------DDDPRPCAPLEHCLKSLHRQISQYVASDN-- 77 (617)
Q Consensus 8 ~~~a~~~~l~~~L~ks~~~lt~~m~~iL~~~~~rl~~~~~~--------~~~~~~~~nIe~~l~~~~~vi~~~~~~~~-- 77 (617)
.++-+...|...+.+-. +.-..|...++++-.++++...+ ..+......||...+-++..+..|--...
T Consensus 68 e~l~ef~~i~~~l~~v~-e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~ 146 (655)
T KOG3758|consen 68 EFLKEFKEIKRRLDRVS-EDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSEEL 146 (655)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence 35556666666666666 66666666777776666665522 12223345677788888888888876522
Q ss_pred CCcCCcccH-HHHHHHHHHHHHHhhhhCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccC
Q 041244 78 PIWADSADS-SAFLDSVDELISTIKDWSP---MAGDKSINACLARADDLLQQSMFRLEEEFRSLMERGGDSFELCDSTTA 153 (617)
Q Consensus 78 ~i~~~~~~~-~~yL~av~~l~~~~~~l~~---~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s~~~~p~~~~~~ 153 (617)
....+.+++ +.|..+++++++.-+.-+. .....++-+....++...+.|..+|=. +. +++.
T Consensus 147 ~~L~~~g~i~e~FF~vL~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~~E~a~erl~r----~~-qs~e---------- 211 (655)
T KOG3758|consen 147 DLLTESGPIDEDFFKVLDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALIQEGAYERLFR----WS-QSSE---------- 211 (655)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH----Hh-hhHh----------
Confidence 122232343 4788888888877654331 122223344455555555555554432 11 1110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCccccccCCChHHHHHHHHHHHHHHhCC-CchhHHHHHHHHhHHHH-HH
Q 041244 154 NLSFDDDDDDGNEDDSDDSDSNQIPVAQPVNDYDIIIDALPSVTVNDLNEIAKRMVSAG-FGKECSHVYSSCRREFL-EE 231 (617)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~Ia~~m~~~g-~~~~~~~~Y~~~R~~~l-~~ 231 (617)
+.+..+ .=.+++-+-|++-..++...- --+.|++.|+..|+..| .+
T Consensus 212 ---~~~l~~-----------------------------t~~~E~~~il~kA~~~L~~~p~lfk~~ide~~~aR~~~L~~~ 259 (655)
T KOG3758|consen 212 ---CRNLTG-----------------------------TDSQEVSPILRKAFVFLSSRPVLFKYLIDEVGTARSQSLLRQ 259 (655)
T ss_pred ---hcCCcc-----------------------------ccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 001334466666666665542 24689999999998875 67
Q ss_pred HHHhc--CCc-c--cchHHhhcCchHhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCC--------cch-------
Q 041244 232 SMSRL--GLQ-K--LSIEEVQKMPWQEVEEQIDRWVKATNVALRILFPSERRLCDRVFFGFS--------SAA------- 291 (617)
Q Consensus 232 sL~~L--~~~-~--~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~--------~~~------- 291 (617)
.+..| |-. . .+|+.-..=|-.. =+.+-.|++.. .++|+++...+|.... +.+
T Consensus 260 Fisaltrg~~~~~PrpIel~ahDPlRy-IGDmLawlHq~-------ia~Ekelv~aLfd~~~~d~q~n~~~~en~~~vl~ 331 (655)
T KOG3758|consen 260 FISALTRGGPGGMPRPIELHAHDPLRY-IGDMLAWLHQA-------IANEKELVEALFDFKKEDLQDNISISENLPNVLG 331 (655)
T ss_pred HHHHHccCCCCCCCCCccccCCChHHH-HHHHHHHHHHH-------hhhHHHHHHHHhcchhhhhccCCCchhHhHHHHh
Confidence 77777 311 1 1232211111111 22355677654 4889999998883210 001
Q ss_pred -------hhHHHHHhHHHHHHHHhHHHHHhhcCCCch---hhhhhhhHHHHHHhhhHhHHHhhchhhHHHHHHHHHHHHH
Q 041244 292 -------DLSFMEVCRGSTIQLLNFADAIAIGSRSPE---RLFKVLDVFETLRDLMPEFEAVFSDQYCLLLRNEAVTIWK 361 (617)
Q Consensus 292 -------~~~f~~i~~~~i~~ll~f~~~va~~~r~~~---klf~lLdm~e~L~~l~p~~~~lf~~~~~~~~r~~~~~~l~ 361 (617)
+.|+..+|++. ---++.|...-.++- ++..+|..|.. .|..+..+.+ .+...++
T Consensus 332 ~~dn~lld~i~~gvcrPl----kvRvEqil~~e~~~Iilfki~nlL~FY~~------~fs~~v~~ds------~l~~~l~ 395 (655)
T KOG3758|consen 332 GIDNKLLDDILEGVCRPL----KVRVEQILQAEKNAIILFKISNLLKFYRV------TFSKLVQDDS------ALLNTLK 395 (655)
T ss_pred chhhhHHHHHHHHhcchh----HHHHHHHHHcCcCceeehhHHHHHHHHHH------HHHHHhcccH------HHHHHHH
Confidence 12333333221 111233322333332 33344444432 2334443322 2445667
Q ss_pred HHHHHHHHHHHHHHH-HHhcCCC-CccCC-CCcccc-chHHHHHHHHHHHhcHHHHHHHHhhC--CCCcHHHHHHHHHHH
Q 041244 362 RLGEAIRGIFMELEN-LIRRDPA-KAAVP-GGGLHP-ITRYVMNYLRAACRSTQTLEQVFEKD--SSSSLSVQMAWIMEL 435 (617)
Q Consensus 362 ~L~~~~~~~f~e~~~-~I~~~~~-~~~~~-dg~Vh~-lT~~vm~yl~~L~~y~~~l~~iL~~~--~~~~l~~~i~~ii~~ 435 (617)
.|...++.+|-...+ .++.-.. ..+|| |=.-+| ++.+++.+...+.-|..+........ ....+++.+.-|+..
T Consensus 396 ~L~d~s~q~~~~~l~~~~~~l~~~~l~p~~DLlPpp~v~~~l~ll~ei~~~~~a~~~~~d~~~~df~~l~s~vldpilq~ 475 (655)
T KOG3758|consen 396 ELEDISKQRFIGYLEDHVKKLMRKELSPPSDLLPPPAVREYLNLLVEIFEIYEASHTAEDGEQLDFKLLLSCVLDPILQM 475 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhhhhhccccccccchHHHHHHHHHHHHHH
Confidence 777777776644333 3332111 12334 644444 45555555555555665554432221 112233334444443
Q ss_pred HHHHHHhhhhcCCCccchhhhhhhhHHHHHHhhcccchhhhhcchHHHHHHHHHHHHHH--------HHH-HhhHHHHHh
Q 041244 436 LESNLEVKSKIYRDPALCSVFMMNNGRYIVQKVNDNELGSLLGDDWIRKHNAKVRQYHS--------NYQ-RSSWNKVFG 506 (617)
Q Consensus 436 L~~nLe~ksk~ykd~aL~~iFLmNN~~yI~~~v~~s~L~~lLg~~w~~~~~~~~~~~~~--------~Y~-~~sW~~vl~ 506 (617)
-+..-+.+-. -+|.+. -+||+|-.+.|-..+.+=+. + +.-......+++.|.. .|+ +..-+++.+
T Consensus 476 c~~sae~~lp-~~d~~~-~if~iNcL~~iks~l~~~e~---~-~~~~e~lq~~ie~~~d~L~t~q~s~ll~~~GLs~~~q 549 (655)
T KOG3758|consen 476 CQKSAEAHLP-TSDKGS-LIFMINCLDLIKSRLARYEF---L-DERVEMLQAKIEAYLDTLVTLQVSFLLENTGLSDLYQ 549 (655)
T ss_pred HHHHHHhcCC-Cccccc-ceehhhhHHHHHhHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 3333333311 112221 59999999999887765321 1 0111122222222222 221 223334444
Q ss_pred hhccCCCCCC----CCCccchhhHHHHHHHHHHHHHHHHhhccce------EecCHHHHHHHHHHHHhhhhhhHHHHHHH
Q 041244 507 VLKIDNIPSA----PSGAAGARSLKEKLKLFYSYFDETCKTQSSW------VVFDEQLREELKIAITKLLLPAYGNFIVK 576 (617)
Q Consensus 507 ~L~~~~~~~~----~~~~~~k~~iKekfk~FN~~Fee~~~~q~~w------~VpD~~LR~~Lr~~i~~~vvpaY~~F~~k 576 (617)
.+....+..+ ..++ +-..+++-...| +.....-..+ .+.-|.+|++++......++-+|..+|++
T Consensus 550 ~~~~~~p~~~~ls~~~~l-~s~~~~~~i~~f----d~~l~~~~~~~lpq~q~l~sp~~r~~i~kr~~~~~~~aY~~i~~a 624 (655)
T KOG3758|consen 550 KFNMITPEDSVLSLDPDL-ESALLDEAIVKF----DMFLHAPLNLTLPQLQQLTSPMVRDEICKRSAKKFVLAYEIIYKA 624 (655)
T ss_pred HHHhcCcchhhhhccccc-cHHHHHHHHHHH----HHHhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333222111 0111 123333333333 2222222222 34578999999999999999999999999
Q ss_pred hcCCCCCCCCC-CcccccCHHHHHHHH
Q 041244 577 FQNSPDICKHP-ERLIKYTVEDVEAQI 602 (617)
Q Consensus 577 y~~~~~~~kn~-~KyiKYtpe~le~~L 602 (617)
..+....-|.| +--++++||++..++
T Consensus 625 l~~~~ngy~dPve~ll~~~~dq~~tll 651 (655)
T KOG3758|consen 625 LINPYNGYKDPVESLLHFSPDQVDTLL 651 (655)
T ss_pred HhCcCCCCCChHHHHhcCCHHHhcccc
Confidence 88764344566 677888888877654
No 6
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.47 E-value=0.00018 Score=80.62 Aligned_cols=398 Identities=14% Similarity=0.149 Sum_probs=220.3
Q ss_pred HHHHHHHhhccChhhhHHHHHHHhhhcccccccCcc-CCCCC-------CCCcchHHHHHHHHHHHHhhhcCCC---CCc
Q 041244 12 VARHIARTLGHNDDTMADDILQIFSNFDGRFSREKM-TDDDP-------RPCAPLEHCLKSLHRQISQYVASDN---PIW 80 (617)
Q Consensus 12 ~~~~l~~~L~ks~~~lt~~m~~iL~~~~~rl~~~~~-~~~~~-------~~~~nIe~~l~~~~~vi~~~~~~~~---~i~ 80 (617)
....+...+...+ ++=..|-..|.+|.+.|+.+.. ...++ ..-+|-..+.+.+..++..--.+.. .|.
T Consensus 15 ~~~~Lh~~i~~cd-~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~ 93 (508)
T PF04129_consen 15 NFADLHNQIQECD-SILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSIC 93 (508)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHh
Confidence 3445556666667 7778899999999998888761 11111 1223333444444444444444322 255
Q ss_pred CCcccHHHHHHHH-HHHHHHhhhhC--CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCC
Q 041244 81 ADSADSSAFLDSV-DELISTIKDWS--PMAGDKSINACLARADDLLQQSMFRLEEEFRSLMERGGDSFELCDSTTANLSF 157 (617)
Q Consensus 81 ~~~~~~~~yL~av-~~l~~~~~~l~--~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s~~~~p~~~~~~~~~~ 157 (617)
+|+.+. .|+..+ ..+.+.....+ .....++.+.....++.|-.+|..|+-+.|-..+..-++|.-+
T Consensus 94 ~~~v~e-~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn---------- 162 (508)
T PF04129_consen 94 EGPVNE-QYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTN---------- 162 (508)
T ss_pred cCCCCH-HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc----------
Confidence 566554 566554 43433333222 1233344556667788888999999999999999888765211
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCccccccCCChHHHHHHHHHHHHHHhCCC--chhHHHHHHHHhHHHHH-----
Q 041244 158 DDDDDDGNEDDSDDSDSNQIPVAQPVNDYDIIIDALPSVTVNDLNEIAKRMVSAGF--GKECSHVYSSCRREFLE----- 230 (617)
Q Consensus 158 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~Ia~~m~~~g~--~~~~~~~Y~~~R~~~l~----- 230 (617)
. .+.+..+-.-+.+..+|...+. ..|+.++|++.=+.+..
T Consensus 163 --------------------------------~-q~iQ~~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~~~Y~~~F~~ 209 (508)
T PF04129_consen 163 --------------------------------S-QIIQQVLLKYKELFQFLKKHSPELAKELRQAYVETMSWYYSSYFKR 209 (508)
T ss_pred --------------------------------h-HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222255566778888877653 35677777753332221
Q ss_pred --HHHHhcCCcccc-------------------------------hH---Hhhc--C------chH--------hhHHHH
Q 041244 231 --ESMSRLGLQKLS-------------------------------IE---EVQK--M------PWQ--------EVEEQI 258 (617)
Q Consensus 231 --~sL~~L~~~~~~-------------------------------~~---~~~~--~------~~~--------~~~~~i 258 (617)
.+|..|.....+ .+ ++.. . +.- ..|..+
T Consensus 210 Y~~~L~kl~~~~~~~~~dL~g~~~~~~~~~~s~~~~~~~~~~~Fslg~R~~iL~~~~~~p~i~~~~a~~~~~k~~~E~iF 289 (508)
T PF04129_consen 210 YIRSLEKLQLRIIDSKDDLIGVEDSSKGGFFSSKSSLKNRSSVFSLGRRIDILNSELDAPIIVPQIAEDNSQKYPIEEIF 289 (508)
T ss_pred HHHHHHHHHhhcccccccccCCCccccccccCCCcccccchhhhhhhHHHHHHhhcccCCccccchhhcccccCCHHHHH
Confidence 233333211100 00 0000 0 000 134445
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhccCCCcchhhHHHHHhHHHHHHHHhHHHHHhhcCCCchhhhhhhhHHHHHHhhhH
Q 041244 259 DRWVKATNVALRILFPSERRLCDRVFFGFSSAADLSFMEVCRGSTIQLLNFADAIAIGSRSPERLFKVLDVFETLRDLMP 338 (617)
Q Consensus 259 ~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~va~~~r~~~klf~lLdm~e~L~~l~p 338 (617)
+.|..++-- -..+|+..|.+-|...+...+.+|.+|..+++..+..|-+.... .+ -+++.+|=|.-......-
T Consensus 290 RS~~~~L~D----n~t~Ey~F~~~FF~~~~~~~~~if~~If~~t~~~~~~~~~~~l~--~~-~D~iglll~Irl~~~~~~ 362 (508)
T PF04129_consen 290 RSLNKALID----NATSEYLFISEFFSGSGDAAEDIFNQIFEPTFSLLQEFTEQLLS--NS-YDAIGLLLCIRLNQRYQF 362 (508)
T ss_pred HHHHHHHHH----hhhHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHH--cC-CcHHHHHHHHHHHHHHHH
Confidence 555544432 24689999999998755555778999999888888888776422 22 234444444433333322
Q ss_pred hHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccCCCCccccchHHHHHHHHHHHhcHHHHHHHH
Q 041244 339 EFEAVFSDQYCLLLRNEAVTIWKRLGEAIRGIFMELENLIRRDPAK-AAVPGGGLHPITRYVMNYLRAACRSTQTLEQVF 417 (617)
Q Consensus 339 ~~~~lf~~~~~~~~r~~~~~~l~~L~~~~~~~f~e~~~~I~~~~~~-~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~iL 417 (617)
.... ..+..+-.-+..+...|=-....++..=.+.++.-..+ ...++.+.|++|+---.|+..| ..+-
T Consensus 363 ~~~~----R~ip~ld~y~~~~~~~LWprF~~i~d~nieSlk~~~~~~~~~~~~~PH~itrRyaef~~sl-------l~L~ 431 (508)
T PF04129_consen 363 EMQR----RRIPVLDSYLNSLLMLLWPRFQKIMDANIESLKKADPKKLGSIDTRPHYITRRYAEFLSSL-------LKLS 431 (508)
T ss_pred HHHh----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCccCChHHHHHHHHHHHHH-------HHHh
Confidence 1111 11111111222222222223334444445556654333 3346888898887654444443 3333
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHHHhhhhcCCCccchhhhhhhhHHHHHHhhcccc
Q 041244 418 EKDSSSSLSVQMAWIMELLESNLEVKSKIYRDPALCSVFMMNNGRYIVQKVNDNE 472 (617)
Q Consensus 418 ~~~~~~~l~~~i~~ii~~L~~nLe~ksk~ykd~aL~~iFLmNN~~yI~~~v~~s~ 472 (617)
...+...+...+..+-..++.-|..-|+..+++..+.+||.||+.+|+..+....
T Consensus 432 ~~~~~~~~~~~l~~L~~~~~~ll~~~s~~~~~~k~~~iFLiNNY~lIl~iL~~~~ 486 (508)
T PF04129_consen 432 SEHPDEQLEPSLNRLRREVEDLLTRLSKEFKDRKEREIFLINNYDLILSILSERT 486 (508)
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccceehHHHHHHHHHHHHhcc
Confidence 3333334555666666666666666688888988999999999999999987643
No 7
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=94.68 E-value=12 Score=44.06 Aligned_cols=210 Identities=15% Similarity=0.228 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhcCCCCccCC-CCccccchHHHHHHHHHHHhcHHHHHHHHhhCCC-----CcH
Q 041244 356 AVTIWKRLGEAIRGIFMELEN----LIRRDPAKAAVP-GGGLHPITRYVMNYLRAACRSTQTLEQVFEKDSS-----SSL 425 (617)
Q Consensus 356 ~~~~l~~L~~~~~~~f~e~~~----~I~~~~~~~~~~-dg~Vh~lT~~vm~yl~~L~~y~~~l~~iL~~~~~-----~~l 425 (617)
+..++.++...+++.|..|.+ .|+. .+...- -.|| +.|++.+..|-..++.++..... ..+
T Consensus 439 l~~~L~~l~~~~k~~f~~fv~~Qi~~ie~--~k~~~k~r~GV-------l~~i~~fp~f~~~~E~~~~~~~~~~~~r~~v 509 (701)
T PF09763_consen 439 LSNLLQKLQVRLKRLFDKFVDEQIKSIEE--TKVSKKKRKGV-------LPFIKKFPEFVKRVESMFSGAERAREDRSLV 509 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccCCCCcc-------chHHHHHHHHHHHHHHHHccccccchHHHHH
Confidence 355677777888888888765 3333 121111 1244 45666667777777777764322 125
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC-----------CccchhhhhhhhHHHHHHhhcccchhhhhcchHHHHHHHHHHHHHH
Q 041244 426 SVQMAWIMELLESNLEVKSKIYR-----------DPALCSVFMMNNGRYIVQKVNDNELGSLLGDDWIRKHNAKVRQYHS 494 (617)
Q Consensus 426 ~~~i~~ii~~L~~nLe~ksk~yk-----------d~aL~~iFLmNN~~yI~~~v~~s~L~~lLg~~w~~~~~~~~~~~~~ 494 (617)
......++.++...|+..++.-. ...-.+|.++=|+||+...+..-.....| +.|.++-....+++..
T Consensus 510 d~aY~kl~~a~~~~l~~~a~~~~~~~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~~~~~~l-~~~~~~A~~~~~~~~~ 588 (701)
T PF09763_consen 510 DKAYEKLVRAMFDSLERIAKLSPKNSGSQDPEDKEKLNYHVVLLENYHHFYEELSQLKINSVL-EEFRKEAKQIYDEHLE 588 (701)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcccccccCccccccchhhHHHHHHHHHHHHHHhhccchhhH-HHHHHHHHHHHHHHHH
Confidence 56677888899999998886432 23558999999999999998765442222 4666665555566555
Q ss_pred HHH----HhhHHHHHhhhcc------CCCCCCCCCcc--chhhHHHHHHH-----HHHHHHHHHhhccceE-------ec
Q 041244 495 NYQ----RSSWNKVFGVLKI------DNIPSAPSGAA--GARSLKEKLKL-----FYSYFDETCKTQSSWV-------VF 550 (617)
Q Consensus 495 ~Y~----~~sW~~vl~~L~~------~~~~~~~~~~~--~k~~iKekfk~-----FN~~Fee~~~~q~~w~-------Vp 550 (617)
.|. +..++++..+... ..++..++..+ +|..+|.-++. .-...+.+|++=..-- ..
T Consensus 589 ~Y~~~~l~r~~~kL~~F~~gve~l~~~~~~~ei~~~~~ySk~~l~kvl~~y~~kev~k~i~~l~krveKHf~~~~~~~~~ 668 (701)
T PF09763_consen 589 AYVTFLLRRPFGKLLDFFEGVEALLQTVSPEEISYQAAYSKQELKKVLKSYPSKEVRKGIEALYKRVEKHFSRDADDPSF 668 (701)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhccCchhcccchhccHHHHHHHHHhCChHHHHHHHHHHHHHHHHHcCCccccccc
Confidence 555 4455666655421 11111111111 35555554444 4556777777654444 34
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHH
Q 041244 551 DEQLREELKIAITKLLLPAYGNFIV 575 (617)
Q Consensus 551 D~~LR~~Lr~~i~~~vvpaY~~F~~ 575 (617)
+..|=+.+=.++.+..+-.|.+|++
T Consensus 669 ~~~Ll~~vW~~~q~~~i~~~~~l~~ 693 (701)
T PF09763_consen 669 EEDLLQVVWSAMQEEFIRQYERLET 693 (701)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666543
No 8
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=93.15 E-value=0.13 Score=48.56 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=74.9
Q ss_pred CCCCCcchHHHHHHHHHHHHhhhcCCCCC--cCC---cccHHHHHHHHHHHHHHhhhhCCCCCCCchhhHHHHHHHHHHH
Q 041244 51 DPRPCAPLEHCLKSLHRQISQYVASDNPI--WAD---SADSSAFLDSVDELISTIKDWSPMAGDKSINACLARADDLLQQ 125 (617)
Q Consensus 51 ~~~~~~nIe~~l~~~~~vi~~~~~~~~~i--~~~---~~~~~~yL~av~~l~~~~~~l~~~~~~~~~~~~l~~~~~Ll~~ 125 (617)
+-..++.+++.-+.|...+.+|+.-+.+- +++ ...-+.|+.-+.+|...+.||+..+..+....-+.++..++.+
T Consensus 54 Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltR 133 (157)
T PF04136_consen 54 LLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTR 133 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 44456788888899999999998755321 222 2456799999999999999998777777778889999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 041244 126 SMFRLEEEFRSLMERGG 142 (617)
Q Consensus 126 a~~~Le~eF~~lL~~~s 142 (617)
|+.-+-..|...|+..+
T Consensus 134 Al~lIk~y~~~~l~~~~ 150 (157)
T PF04136_consen 134 ALTLIKNYVVNTLRSAT 150 (157)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 9
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.81 E-value=3.2e+02 Score=31.76 Aligned_cols=133 Identities=9% Similarity=0.070 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhccChhhhHHHHHHHhhhcccccccCcc-CCCCCCCCcchHHHHHHHHHHHHhhhcCCCC--CcCCc--
Q 041244 9 LLAVARHIARTLGHNDDTMADDILQIFSNFDGRFSREKM-TDDDPRPCAPLEHCLKSLHRQISQYVASDNP--IWADS-- 83 (617)
Q Consensus 9 ~~a~~~~l~~~L~ks~~~lt~~m~~iL~~~~~rl~~~~~-~~~~~~~~~nIe~~l~~~~~vi~~~~~~~~~--i~~~~-- 83 (617)
.++...++-+...-.. +.-++|.+-......+.+.+.. ...+-..+..+-+--+.|.+.+.+|+.-+.. .++.|
T Consensus 103 ~~~~c~~il~q~~~~~-~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~kl~elae~I~k~L~yF~~le~l~~~l~~pt~ 181 (733)
T KOG2604|consen 103 RIEECDAILDQTNNAL-DTLLSLQKKFEFVSQKTSALHEACEQLLEEQSKLSELAEGIRKKLHYFAELEELNRRLNHPTL 181 (733)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCcch
Confidence 3344444443333333 3334555556666665555441 1111111112222223334445555553321 12222
Q ss_pred -ccHHHHHHHHHHHHHHhhhhCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 041244 84 -ADSSAFLDSVDELISTIKDWSPMAGDKSINACLARADDLLQQSMFRLEEEFRSLMERGG 142 (617)
Q Consensus 84 -~~~~~yL~av~~l~~~~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s 142 (617)
++-.+|...+.+|.+.+.|++.+...+...+.+-.....|.+|+.-.-.+|..+|.+..
T Consensus 182 ~v~~~sF~~~l~~ld~ci~~l~en~~fkd~~~Y~~k~kqcL~kA~~lik~y~~~vlkq~t 241 (733)
T KOG2604|consen 182 SVGKVSFKEMLAKLDECIMFLEENPDFKDAPAYLGKYKQCLSKALGLIKTYFTNVLKQTT 241 (733)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56779999999999999999876777666677888999999999999999999999764
No 10
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=52.12 E-value=5.3 Score=35.55 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=20.4
Q ss_pred HHhcCCCCCCCCCCcccccCHHHHH
Q 041244 575 VKFQNSPDICKHPERLIKYTVEDVE 599 (617)
Q Consensus 575 ~ky~~~~~~~kn~~KyiKYtpe~le 599 (617)
.+-..++++-+||+||.|||-+++.
T Consensus 49 ~~~~~vPDYv~nP~KwTkYSL~dv~ 73 (115)
T PF15264_consen 49 PRSPGVPDYVRNPEKWTKYSLDDVS 73 (115)
T ss_pred ccCCCCCCCcCCcccceeeecCCCc
Confidence 3345667899999999999999983
No 11
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=51.35 E-value=65 Score=38.31 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccceEec-CHHHHHHHHHHHHhhhhhhHHHHH
Q 041244 523 ARSLKEKLKLFYSYFDETCKTQSSWVVF-DEQLREELKIAITKLLLPAYGNFI 574 (617)
Q Consensus 523 k~~iKekfk~FN~~Fee~~~~q~~w~Vp-D~~LR~~Lr~~i~~~vvpaY~~F~ 574 (617)
|+.|-...|.=| |++++.+|-.-.+. ...|.+.+|.+....|||+|.+--
T Consensus 1014 kenI~ql~KSkn--l~dtvar~i~~~~Qtsg~lQ~a~resm~SsviPafEKSc 1064 (1283)
T KOG1916|consen 1014 KENINQLLKSKN--LEDTVARQIQAQFQTSGPLQEALRESMESSVIPAFEKSC 1064 (1283)
T ss_pred HHHHHHHHhhcc--HHHHHHHHHHHHHhccchHHHHHHHHhhhhccHHHHHHH
Confidence 566666677767 88888777555552 223999999999999999998643
No 12
>PHA01746 hypothetical protein
Probab=39.96 E-value=8.8 Score=33.41 Aligned_cols=22 Identities=18% Similarity=0.458 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCCCCCCCCcccccCHHH
Q 041244 570 YGNFIVKFQNSPDICKHPERLIKYTVED 597 (617)
Q Consensus 570 Y~~F~~ky~~~~~~~kn~~KyiKYtpe~ 597 (617)
-..|++||.+.+ .||||+||.+
T Consensus 76 Ia~FLeKYS~~L------nkYVkFs~~n 97 (131)
T PHA01746 76 IAEFLEKYSDFL------NEYVKFTPRN 97 (131)
T ss_pred HHHHHHHHHHHH------HHHeeeccCC
Confidence 356888887654 5788888754
No 13
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=35.82 E-value=2.9e+02 Score=23.81 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=50.4
Q ss_pred HHHHhHHHHHHHHhHHHHHhhcCCCchhhhhhhhHHHHHHhhhHhHHHhhchhhHHHHHHHHHHHHHHHHH--HHHHHHH
Q 041244 295 FMEVCRGSTIQLLNFADAIAIGSRSPERLFKVLDVFETLRDLMPEFEAVFSDQYCLLLRNEAVTIWKRLGE--AIRGIFM 372 (617)
Q Consensus 295 f~~i~~~~i~~ll~f~~~va~~~r~~~klf~lLdm~e~L~~l~p~~~~lf~~~~~~~~r~~~~~~l~~L~~--~~~~~f~ 372 (617)
|....+.++..+.+--...+.-.|++..--.+..+|..|+.+.|.+....... .+.|..+.++..+|.. -||.+|.
T Consensus 3 f~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~--ee~R~~~E~lQdkL~qi~eAR~AlD 80 (96)
T PF12210_consen 3 FCNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQ--EEKRVYYEGLQDKLAQIKEARAALD 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566655555444445456777777788889999999999877655432 3556777777777764 3667776
Q ss_pred HHHH
Q 041244 373 ELEN 376 (617)
Q Consensus 373 e~~~ 376 (617)
.+..
T Consensus 81 alR~ 84 (96)
T PF12210_consen 81 ALRE 84 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 14
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.69 E-value=4.6e+02 Score=25.28 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.2
Q ss_pred cccCCChHHHHHHHHHHHHHHh
Q 041244 189 IIDALPSVTVNDLNEIAKRMVS 210 (617)
Q Consensus 189 ~~~~l~~~~~~~L~~Ia~~m~~ 210 (617)
.++.+.|+++.+|-..++.+..
T Consensus 118 ~ip~vDp~VL~DlE~~~~el~~ 139 (222)
T KOG4514|consen 118 NIPEVDPSVLSDLELEAQELAS 139 (222)
T ss_pred CCCCCChHHHHHHHHHHHHHHH
Confidence 3788999999999888887754
No 15
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=32.41 E-value=87 Score=35.22 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccceEecCHHHHHHHHHHHHhhhhhhHHHHHHHhcCCC-CCCCCCCcccccCHHHHHHH
Q 041244 523 ARSLKEKLKLFYSYFDETCKTQSSWVVFDEQLREELKIAITKLLLPAYGNFIVKFQNSP-DICKHPERLIKYTVEDVEAQ 601 (617)
Q Consensus 523 k~~iKekfk~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~vvpaY~~F~~ky~~~~-~~~kn~~KyiKYtpe~le~~ 601 (617)
|..+-.+.+.|++.|+|+.+.= .+....+..-.|+++|--..... +|-+.-.-|+-++-..+|++
T Consensus 97 r~~l~s~~r~F~E~f~ell~~a--------------e~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~~nlee~ 162 (563)
T KOG3821|consen 97 RFVLASNARKFDEFFLELLRNA--------------ENSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSNVNLEET 162 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 6677788999999999998753 23455677788888875544331 22223456888999999999
Q ss_pred HHHhhc
Q 041244 602 IDELFQ 607 (617)
Q Consensus 602 L~~LF~ 607 (617)
|++||.
T Consensus 163 l~eff~ 168 (563)
T KOG3821|consen 163 LNEFFA 168 (563)
T ss_pred HHHHHH
Confidence 999985
No 16
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=30.00 E-value=1e+03 Score=28.46 Aligned_cols=131 Identities=17% Similarity=0.297 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhHHHHHHHHHhcCCcccchHHhhcCchHhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 041244 199 NDLNEIAKRMVSAGFGKECSHVYSSCRREFLEESMSRLGLQKLSIEEVQKMPWQEVEEQIDRWVKATNVALRILFPSERR 278 (617)
Q Consensus 199 ~~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~ 278 (617)
...+...+.+..-|...++.+-|..+|+..|.+.=....... .......|...+--.+-.++..|.+
T Consensus 201 ~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~-------------~~~~~~~~L~~fyd~ll~~l~~E~~ 267 (766)
T PF10191_consen 201 DAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSD-------------QSQSFAEWLPSFYDELLSLLHQELK 267 (766)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666699999999999999987654322221110 0134566776655555568899999
Q ss_pred HhhhhccCCCcchhhHHHHHhHHHHHHHHh-HHHHHhhc-CCCch--hhhhhhhHHHHHHhhhHhHHHhhch
Q 041244 279 LCDRVFFGFSSAADLSFMEVCRGSTIQLLN-FADAIAIG-SRSPE--RLFKVLDVFETLRDLMPEFEAVFSD 346 (617)
Q Consensus 279 L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~-f~~~va~~-~r~~~--klf~lLdm~e~L~~l~p~~~~lf~~ 346 (617)
-|.+||+...+ +...+....+..|-. |...|... +++.. ++..++++|.+-.++.-.++.+|..
T Consensus 268 w~~~vF~~~~~----~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 268 WCSQVFPDESP----VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS 335 (766)
T ss_pred HHHHHcCCchh----HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998543 222333333333222 33333222 23333 4888899998888887777777765
No 17
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=29.13 E-value=1e+03 Score=28.09 Aligned_cols=100 Identities=23% Similarity=0.394 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhHHHHHHHHHhcC-CcccchHHhhcCchHhh----------HHHHHHHHHHHHH
Q 041244 199 NDLNEIAKRMVSAGFGKECSHVYSSCRREFLEESMSRLG-LQKLSIEEVQKMPWQEV----------EEQIDRWVKATNV 267 (617)
Q Consensus 199 ~~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~-~~~~~~~~~~~~~~~~~----------~~~i~~w~~~~~~ 267 (617)
..++.+|..|...+-+..|++.|.+.+.-+.+. ..++ .+....+. .|+.+ ..........+.
T Consensus 129 ~~M~~~A~vL~~fngg~~~i~~fi~k~~~f~~~--~~~~~~~~~~~~~----~~~~l~d~~~~~~~~~~~l~~~~~~i~- 201 (710)
T PF07393_consen 129 ERMKEFAKVLLEFNGGSSCIDFFINKHEFFIDE--DQLDESNGFEDEE----IWEKLSDPDSHPPINEESLDAFFEDIR- 201 (710)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHhChhhhhh--hhhccccccchhH----HHHhccCcccccccchHHHHHHHHHHH-
Confidence 678899999988877789999999987655521 1111 00100000 02111 122333333333
Q ss_pred HHHHhhHHHHHHhhhhccCCCcch----hhHHHHHhHHHHHHHHh
Q 041244 268 ALRILFPSERRLCDRVFFGFSSAA----DLSFMEVCRGSTIQLLN 308 (617)
Q Consensus 268 ~v~~l~~~E~~L~~~vf~~~~~~~----~~~f~~i~~~~i~~ll~ 308 (617)
..+..|.++.+.||+...++- ..+|.+.+.+-+..+|+
T Consensus 202 ---~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~~i~~lL~ 243 (710)
T PF07393_consen 202 ---DVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQEYIESLLE 243 (710)
T ss_pred ---HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999997754422 23445555555544544
No 18
>COG2733 Predicted membrane protein [Function unknown]
Probab=27.51 E-value=5.7e+02 Score=27.81 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=59.1
Q ss_pred HHHHHHHhhHHHHHhhhccCCCCCCCCCccchhhHHH-HHHHHHHHHHHHHhhccceEecCHHHHHHHHHHHHh---hhh
Q 041244 492 YHSNYQRSSWNKVFGVLKIDNIPSAPSGAAGARSLKE-KLKLFYSYFDETCKTQSSWVVFDEQLREELKIAITK---LLL 567 (617)
Q Consensus 492 ~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~~k~~iKe-kfk~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~---~vv 567 (617)
....|....|+....++..|-.. + -..++. -++.|+.-++++ +.|++||..|..-+.+ .++
T Consensus 290 ~i~~~~~~~w~~~~~~l~~D~e~--~-----~s~l~~~l~~~~~~~Ge~l--------~~D~~lr~kln~~~~~aa~~l~ 354 (415)
T COG2733 290 AIATAAGDMWTSLSEWLKEDYES--E-----DSMLRKRLARAVQSVGEEL--------IADDALRAKLNEHLVQAAERLA 354 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--c-----hhHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999998776432 1 123333 367788888877 3599999998876543 455
Q ss_pred hhHHHHHHHhcCCCCCCCCCCcccccCHHHHHHHHHH
Q 041244 568 PAYGNFIVKFQNSPDICKHPERLIKYTVEDVEAQIDE 604 (617)
Q Consensus 568 paY~~F~~ky~~~~~~~kn~~KyiKYtpe~le~~L~~ 604 (617)
+-|..+..++-. +--=+|+.+++.++|..
T Consensus 355 e~~~~~it~~I~--------dTv~~wD~~elsr~iel 383 (415)
T COG2733 355 EEKHAEITKHIS--------DTVKRWDAEELSRQIEL 383 (415)
T ss_pred HHHhHHHHHHHH--------HHHhhcCHHHHHHHHHH
Confidence 556666555432 12225788888887753
No 19
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.55 E-value=2.4e+02 Score=29.26 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=46.7
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCcCCcccHHHHHHHHHHHHHHhhhhCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 041244 55 CAPLEHCLKSLHRQISQYVASDNPIWADSADSSAFLDSVDELISTIKDWSPMAGDKSINACLARADDLLQQSMFRLEEEF 134 (617)
Q Consensus 55 ~~nIe~~l~~~~~vi~~~~~~~~~i~~~~~~~~~yL~av~~l~~~~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF 134 (617)
.+|+.+.++.+..+..-++.... |.. -.+...|..|++-+.+.-+-++.+....-.+..-.++++....-..+|+..|
T Consensus 111 r~~l~~ll~~L~~i~~v~~~~~~-l~~-ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l 188 (291)
T PF10475_consen 111 RQNLKKLLEKLEQIKTVQQTQSR-LQE-LLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDL 188 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH-HHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45666666666665444443211 110 0122345555444433333333334444456677788888888889999999
Q ss_pred HHHHH
Q 041244 135 RSLME 139 (617)
Q Consensus 135 ~~lL~ 139 (617)
..+..
T Consensus 189 ~~~~~ 193 (291)
T PF10475_consen 189 SKVCQ 193 (291)
T ss_pred HHHHH
Confidence 88755
No 20
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=22.88 E-value=3.5e+02 Score=28.28 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=26.9
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHhhHHHHHhhhccC
Q 041244 476 LLGDDWIRKHNAKVRQYHSNYQRSSWNKVFGVLKID 511 (617)
Q Consensus 476 lLg~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~ 511 (617)
-++++.+.-+...++.|+.-|+ +.+.+++-+.+-
T Consensus 116 ~Ik~dYldvYa~lvk~YTd~yQ--~fn~~lSkls~~ 149 (308)
T TIGR02553 116 KIGDSYLGVYENVVEGYTDFYQ--AFSDILSKMQDW 149 (308)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhh
Confidence 3457778889999999988887 578898888543
No 21
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=21.61 E-value=84 Score=24.65 Aligned_cols=25 Identities=32% Similarity=0.487 Sum_probs=15.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHhhc
Q 041244 583 ICKHPERLIKYTVEDVEAQIDELFQ 607 (617)
Q Consensus 583 ~~kn~~KyiKYtpe~le~~L~~LF~ 607 (617)
+.+.+-..+++++++||++|-+|-.
T Consensus 18 ~~~~~P~W~~~~~~eVe~~I~klak 42 (60)
T PF08069_consen 18 YRRSPPSWLKYSPEEVEELIVKLAK 42 (60)
T ss_dssp S-SS--TT--S-HHHHHHHHHHHCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 3455668999999999999998843
Done!