Query 041244
Match_columns 617
No_of_seqs 206 out of 507
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 08:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 1E-101 4E-106 870.2 39.3 514 65-610 2-571 (571)
2 2b1e_A Exocyst complex compone 100.0 9.6E-95 3.3E-99 810.2 36.2 502 55-606 2-563 (564)
3 2x5h_A ORF 131; viral protein; 36.1 4.5 0.00015 32.2 -1.3 19 571-595 78-96 (97)
4 2d2s_A Exocyst complex compone 35.1 3E+02 0.01 26.2 20.8 94 199-314 92-188 (235)
5 1zva_A E2 glycoprotein; membra 26.5 41 0.0014 26.2 2.7 37 10-46 13-49 (77)
6 1ji8_A Dissimilatory siroheme- 20.3 37 0.0013 28.8 1.5 41 565-610 54-94 (111)
7 2ibf_B Invasin IPAA, 70 kDa an 19.8 38 0.0013 20.1 1.0 20 21-41 6-25 (26)
8 2pco_A Latarcin-1, LTC-1; cont 19.2 66 0.0022 19.8 1.9 18 525-542 6-23 (26)
9 4e9f_A Methyl-CPG-binding doma 17.6 83 0.0028 28.4 3.3 50 533-605 32-81 (161)
10 2jr2_A UPF0352 protein CPS_261 16.7 70 0.0024 25.0 2.1 16 592-607 6-21 (76)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=1.1e-101 Score=870.17 Aligned_cols=514 Identities=23% Similarity=0.365 Sum_probs=438.1
Q ss_pred HHHHHHhhhcC---CCCCcCCc-ccHHHHHHHHHHHHHHhhhhCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041244 65 LHRQISQYVAS---DNPIWADS-ADSSAFLDSVDELISTIKDWSPMAGDKSINACLARADDLLQQSMFRLEEEFRSLMER 140 (617)
Q Consensus 65 ~~~vi~~~~~~---~~~i~~~~-~~~~~yL~av~~l~~~~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~ 140 (617)
+|+|+++|+.. +.+||.|| .+++.||+||++|++++++|. .+++.+..+.++++|+++||.+||+||++||.+
T Consensus 2 ae~v~~~~d~~~~~e~~i~~gp~~~l~~yL~av~~l~~a~~~~~---~~~~~s~~l~~~~~Ll~~a~~~Le~eF~~lL~~ 78 (571)
T 2pft_A 2 SDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQ---DNSPDSPELNKVKLLFERGKESLESEFRSLMTR 78 (571)
T ss_dssp -CTTSTHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhhcCcHhhHHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899986 35688876 899999999999999999885 223345569999999999999999999999999
Q ss_pred cCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCccccccCCChHHHHHHHHHHHHHHhCCCchhHHHH
Q 041244 141 GGDSFELCDSTTANLSFDDDDDDGNEDDSDDSDSNQIPVAQPVNDYDIIIDALPSVTVNDLNEIAKRMVSAGFGKECSHV 220 (617)
Q Consensus 141 ~s~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~Ia~~m~~~g~~~~~~~~ 220 (617)
++.|++|..... +.+.+++ + + +.....++.+||+++++|+.||+||+.+||.++|+++
T Consensus 79 ~~~~~~p~~ll~----~~~~~~~-----~--------~-----~~~~~~~~~~~~~~~~~L~~Ia~~m~~~g~~~~~~~~ 136 (571)
T 2pft_A 79 HSKVVSPVLLLD----LISADDE-----L--------E-----VQEDVVLEHLPESVLRDVVRISRWLVEYGRNQDFMNV 136 (571)
T ss_dssp HCCCCCHHHHHH----HHHHTCC-----C--------C-------------SSCHHHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred cCcCCChHHHHh----ccccccc-----c--------C-----ccccccccCCCHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 999999964321 0000000 0 0 0011125689999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhc------------------------CCcccchHHhhcCchHhhHHHHHHHHHHHHHHHHHhhHHH
Q 041244 221 YSSCRREFLEESMSRL------------------------GLQKLSIEEVQKMPWQEVEEQIDRWVKATNVALRILFPSE 276 (617)
Q Consensus 221 Y~~~R~~~l~~sL~~L------------------------~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E 276 (617)
|+++|+++++++|..| |.++.++.++++ +|+.++.+|+.|++++.++++ ||++|
T Consensus 137 Y~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~wi~~~~~~~~-l~~~E 214 (571)
T 2pft_A 137 YYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPG-RDDMLDVETDAYIHCVSAFVK-LAQSE 214 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc-chHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999 344445555544 799999999999999998877 89999
Q ss_pred HHHhhhhccCCCcchhhHHHHHhHHHHHHHHhHHHHHh-hcCCCc--hhhhhhhhHHHH---HHhhhHhHHHhhchhhHH
Q 041244 277 RRLCDRVFFGFSSAADLSFMEVCRGSTIQLLNFADAIA-IGSRSP--ERLFKVLDVFET---LRDLMPEFEAVFSDQYCL 350 (617)
Q Consensus 277 ~~L~~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~va-~~~r~~--~klf~lLdm~e~---L~~l~p~~~~lf~~~~~~ 350 (617)
|+||++||++ ..+..||.+||++++.+|++||++|+ ..+|+| +++|.+++||+. |.+++|+|+.+|+|.++
T Consensus 215 r~L~~~vf~~--~~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr~~~~~~~~~~l~l~~~l~~l~~l~p~~~~~f~g~~~- 291 (571)
T 2pft_A 215 YRLLMEIIPE--HHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQGTAA- 291 (571)
T ss_dssp HHHHHHHSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTHHHHHHHHHHHHHHHHHHTTTSCH-
T ss_pred HHHHHHHcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHccCch-
Confidence 9999999987 46789999999999999999999997 578888 777776666665 88999999999999876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccCC-CCccccchHHHHHHHHHHHhcHHHHHHHHhhCC-------
Q 041244 351 LLRNEAVTIWKRLGEAIRGIFMELENLIRRDP-AKAAVP-GGGLHPITRYVMNYLRAACRSTQTLEQVFEKDS------- 421 (617)
Q Consensus 351 ~~r~~~~~~l~~L~~~~~~~f~e~~~~I~~~~-~~~~~~-dg~Vh~lT~~vm~yl~~L~~y~~~l~~iL~~~~------- 421 (617)
.++.++.+++++|+++++++|.||++.|++++ ++.++| ||+|||+|+||||||+.|++|+++|..+|.+++
T Consensus 292 ~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l~~il~~~~~~~~~~~ 371 (571)
T 2pft_A 292 STKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSSSATS 371 (571)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHHhccCCCccccc
Confidence 57899999999999999999999999999997 677777 999999999999999999999999999998542
Q ss_pred ------CCcHHHHHHHHHHHHHHHHHhhhhcCCCccchhhhhhhhHHHHHHhhcccchhhhhc---chHHHHHHHHHHHH
Q 041244 422 ------SSSLSVQMAWIMELLESNLEVKSKIYRDPALCSVFMMNNGRYIVQKVNDNELGSLLG---DDWIRKHNAKVRQY 492 (617)
Q Consensus 422 ------~~~l~~~i~~ii~~L~~nLe~ksk~ykd~aL~~iFLmNN~~yI~~~v~~s~L~~lLg---~~w~~~~~~~~~~~ 492 (617)
.++|+.++.++|++|+.|||.|||.|+|++|++||||||+|||+++|++|+|..+|| ++|+++|+.++++|
T Consensus 372 ~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~l~~llg~~~~~~~~~~~~~i~~~ 451 (571)
T 2pft_A 372 YSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQ 451 (571)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTSTHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhccchHHHhCcchhHHHHHHHHHHHHH
Confidence 247899999999999999999999999999999999999999999999999999999 68999999999999
Q ss_pred HHHHHHhhHHHHHhhhccCCCCCC-CCC-cc--chhhHHHHHHHHHHHHHHHHhhccceEecCHHHHHHHHHHHHhhhhh
Q 041244 493 HSNYQRSSWNKVFGVLKIDNIPSA-PSG-AA--GARSLKEKLKLFYSYFDETCKTQSSWVVFDEQLREELKIAITKLLLP 568 (617)
Q Consensus 493 ~~~Y~~~sW~~vl~~L~~~~~~~~-~~~-~~--~k~~iKekfk~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~vvp 568 (617)
++.| +++|++|++||.+++.+.+ +|+ .+ +|+.|||||++||.+|||+|++|+.|+||||+||++||.+|+++|+|
T Consensus 452 ~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~p 530 (571)
T 2pft_A 452 IQTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKE 530 (571)
T ss_dssp HHHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhhhccCCcCCCCCCcCcccHHHHHHHHHHHHHHHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHH
Confidence 9999 8999999999998765431 232 22 58999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCCCCCCcccccCHHHHHHHHHHhhcCCC
Q 041244 569 AYGNFIVKFQNSPDICKHPERLIKYTVEDVEAQIDELFQGTG 610 (617)
Q Consensus 569 aY~~F~~ky~~~~~~~kn~~KyiKYtpe~le~~L~~LF~g~~ 610 (617)
+|++||+||++. +|+|||+|||||||++||++|++||+|+.
T Consensus 531 aY~~F~~r~~~~-~~~k~~~KyiKytpe~le~~L~~LFeg~a 571 (571)
T 2pft_A 531 TYGAFLHRYGSV-PFTKNPEKYIKYRVEQVGDMIDRLFDTSA 571 (571)
T ss_dssp HHHHHHHHHHSS-CCCSCHHHHCCCCHHHHHHHHHTSSSCC-
T ss_pred HHHHHHHHhCcC-cccCCCCCccccCHHHHHHHHHHHhCCCC
Confidence 999999999994 89999999999999999999999999963
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=9.6e-95 Score=810.24 Aligned_cols=502 Identities=16% Similarity=0.213 Sum_probs=420.8
Q ss_pred CcchHHHHHHHHHHHHhhhcC---CCCCcCCc--ccHHHHHHHHHHHHHHhhhhCCCC--CC--CchhhHHHHHHHHHHH
Q 041244 55 CAPLEHCLKSLHRQISQYVAS---DNPIWADS--ADSSAFLDSVDELISTIKDWSPMA--GD--KSINACLARADDLLQQ 125 (617)
Q Consensus 55 ~~nIe~~l~~~~~vi~~~~~~---~~~i~~~~--~~~~~yL~av~~l~~~~~~l~~~~--~~--~~~~~~l~~~~~Ll~~ 125 (617)
++|||+++++|++|..+++.+ |.+|..|| ++++.||+||+++++++++|+... ++ +.+++.+.++.+|+++
T Consensus 2 ~~NId~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~~ 81 (564)
T 2b1e_A 2 HMNIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKR 81 (564)
T ss_dssp ------CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHH
Confidence 689999999999999999975 44677886 699999999999999999997322 11 2356789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCccccccCCChHHHHHHHHHH
Q 041244 126 SMFRLEEEFRSLMERGGDSFELCDSTTANLSFDDDDDDGNEDDSDDSDSNQIPVAQPVNDYDIIIDALPSVTVNDLNEIA 205 (617)
Q Consensus 126 a~~~Le~eF~~lL~~~s~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~Ia 205 (617)
|+.+||.||+.+|. +++|+||...+. .+.+++.+|++++++|+.||
T Consensus 82 g~~~L~~~F~~lL~-~s~p~~p~~~i~---------------------------------k~~p~p~l~~~~l~~L~~Ia 127 (564)
T 2b1e_A 82 SEAQLRVYFISILN-SIKPFDPQINIT---------------------------------KKMPFPYYEDQQLGALSWIL 127 (564)
T ss_dssp HHHHHHHHHHHHHT-TSCCCCHHHHHH---------------------------------HTCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCCCHHHhhc---------------------------------cCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999 589999864432 01236789999999999999
Q ss_pred HHHHhCCCchhHHHHHHHHhHHHHHHHHHhcCCcccchHHhhcCchHhhHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcc
Q 041244 206 KRMVSAGFGKECSHVYSSCRREFLEESMSRLGLQKLSIEEVQKMPWQEVEEQIDRWVKATNVALRILFPSERRLCDRVFF 285 (617)
Q Consensus 206 ~~m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~ 285 (617)
+||+.+|+.++|+++|+++|+++|++||+.|+....++...++++|+.++++|..|+.++. .|+.+|+.||++||+
T Consensus 128 ~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~----~l~~~E~~L~~~vf~ 203 (564)
T 2b1e_A 128 DYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEALL----GFIANEKSLVDDLYS 203 (564)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHHH----HHHHHHHHHHHHHSC
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHHH----HHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999755555677778999999999999999985 699999999999999
Q ss_pred CCCcchhhHHHHHhHHHHHH---HHhHHHHHhhcCCCc-hhhhhhhhHHHHHHhhhHhHHHhhchhhHHHHHHHHHHHHH
Q 041244 286 GFSSAADLSFMEVCRGSTIQ---LLNFADAIAIGSRSP-ERLFKVLDVFETLRDLMPEFEAVFSDQYCLLLRNEAVTIWK 361 (617)
Q Consensus 286 ~~~~~~~~~f~~i~~~~i~~---ll~f~~~va~~~r~~-~klf~lLdm~e~L~~l~p~~~~lf~~~~~~~~r~~~~~~l~ 361 (617)
...+.++.||..|+++++.. +++|..+ .++++| +++|.+|+||++|.++. .+|.|..+.. +.++.++++
T Consensus 204 ~~~~~~~~~f~~i~~~~l~~~~~~l~~~~~--~~k~~~~~~~f~~l~~~~~l~~~~----~~~~~~~~~~-~~~~~~~l~ 276 (564)
T 2b1e_A 204 QYTESKPHVLSQILSPLISAYAKLFGANLK--IVRSNLENFGFFSFELVESINDVK----KSLRGKELQN-YNLLQDCTQ 276 (564)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHH--CCC-----CCTHHHHHHHHHHHHH----HHTTTCCCTT-HHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhcChhhcchhHHHHHHHHHHHH----HHHcccccch-HHHHHHHHH
Confidence 87668899999999999984 4444443 367889 89999999999997766 6787765544 489999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-cc-CCCCccccchHHHHHHHHHHHhcHHHHHHHHhh-----CC-------------
Q 041244 362 RLGEAIRGIFMELENLIRRDPAK-AA-VPGGGLHPITRYVMNYLRAACRSTQTLEQVFEK-----DS------------- 421 (617)
Q Consensus 362 ~L~~~~~~~f~e~~~~I~~~~~~-~~-~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~iL~~-----~~------------- 421 (617)
+|+++++++|+||++.|++++++ .+ |+||||||+|+||||||+.|++|+++|..+|.+ |.
T Consensus 277 ~L~~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 356 (564)
T 2b1e_A 277 EVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQN 356 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHGGGHHHHHHHTTTCCGGGTSCTTCCGGGSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCccccccccccccc
Confidence 99999999999999999988654 33 579999999999999999999999999999863 21
Q ss_pred --------CCcHHHHHHHHHHHHHHHHHhh------------------hhcCCCccchhhhhhhhHHHHHHhhcccchhh
Q 041244 422 --------SSSLSVQMAWIMELLESNLEVK------------------SKIYRDPALCSVFMMNNGRYIVQKVNDNELGS 475 (617)
Q Consensus 422 --------~~~l~~~i~~ii~~L~~nLe~k------------------sk~ykd~aL~~iFLmNN~~yI~~~v~~s~L~~ 475 (617)
.++|++++.++|++|+.|||.| |+.|+|++++ +|||||+|||+++|++|+|..
T Consensus 357 ~~~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~FllNN~~yI~~~v~~SeL~~ 435 (564)
T 2b1e_A 357 EALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-FFILMNLTLVEQIVEKSELNL 435 (564)
T ss_dssp ----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-HHHHHHHHHHHHHHHTSTHHH
T ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-HHHHHhHHHHHHHHhhhhhHh
Confidence 1368999999999999999999 4679999996 599999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHhhHHHHHhhhccCCCCCCCCC-ccchhhHHHHHHHHHHHHHHHHhhccceEecCHHH
Q 041244 476 LLGDDWIRKHNAKVRQYHSNYQRSSWNKVFGVLKIDNIPSAPSG-AAGARSLKEKLKLFYSYFDETCKTQSSWVVFDEQL 554 (617)
Q Consensus 476 lLg~~w~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~-~~~k~~iKekfk~FN~~Fee~~~~q~~w~VpD~~L 554 (617)
+||++|.++|.+.+++| +.|++++|++|++||.+++...+.|. ..+|+.+||||++||++|||+|++|+.|+||||+|
T Consensus 436 lLg~~~~~~~~~~~~~~-~~y~~~sW~~v~~~L~~~~~~~~~~ks~~~k~~iKe~fk~FN~~Fee~~~~q~~w~vpD~~L 514 (564)
T 2b1e_A 436 MLAGEGHSRLERLKKRY-ISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSL 514 (564)
T ss_dssp HTTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HhcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHhcCcccCcCHHH
Confidence 99999999999999999 58999999999999988753322211 12589999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhcCCCCCCCCCCcccccCHHHHHHHHHHhh
Q 041244 555 REELKIAITKLLLPAYGNFIVKFQNSPDICKHPERLIKYTVEDVEAQIDELF 606 (617)
Q Consensus 555 R~~Lr~~i~~~vvpaY~~F~~ky~~~~~~~kn~~KyiKYtpe~le~~L~~LF 606 (617)
|+.||.+|+++|+|+|++||+||+. |+|||+|||||||++||++|++|+
T Consensus 515 R~~Lr~~i~~~v~P~Y~~F~~ry~~---~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 515 KVTLKSEIISLVMPMYERFYSRYKD---SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGG---GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---ccCCCCCcccCCHHHHHHHHHHhc
Confidence 9999999999999999999999996 699999999999999999999996
No 3
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=36.13 E-value=4.5 Score=32.16 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=10.8
Q ss_pred HHHHHHhcCCCCCCCCCCcccccCH
Q 041244 571 GNFIVKFQNSPDICKHPERLIKYTV 595 (617)
Q Consensus 571 ~~F~~ky~~~~~~~kn~~KyiKYtp 595 (617)
..|++||.+.+ .||+|+||
T Consensus 78 a~FLeKYS~~L------nkYVkF~~ 96 (97)
T 2x5h_A 78 AEFLEKYSDFL------NEYVKFTP 96 (97)
T ss_dssp HHHHHHTHHHH------HHHC----
T ss_pred HHHHHHHHHHH------HHhhcccc
Confidence 56888887654 57888876
No 4
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.09 E-value=3e+02 Score=26.19 Aligned_cols=94 Identities=13% Similarity=0.220 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhHHHHHHHHHhcCCcccchHHhhcCchHhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 041244 199 NDLNEIAKRMVSAGFGKECSHVYSSCRREFLEESMSRLGLQKLSIEEVQKMPWQEVEEQIDRWVKATNVALRILFPSERR 278 (617)
Q Consensus 199 ~~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~ 278 (617)
..++..+.+|+..|........|-+.|+..+...+..++.+ .....|+..+.. +.|..=++
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~----------------gd~~~Yi~~Ls~---i~Fs~I~~ 152 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSV----------------DNPTNYLTQLAV---IRFQTIKK 152 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--C----------------CSHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhccc----------------CCHHHHHHHHHH---HHHHHHHH
Confidence 67889999999999999999999999999999999877432 123455555443 22332222
Q ss_pred Hh---hhhccCCCcchhhHHHHHhHHHHHHHHhHHHHHh
Q 041244 279 LC---DRVFFGFSSAADLSFMEVCRGSTIQLLNFADAIA 314 (617)
Q Consensus 279 L~---~~vf~~~~~~~~~~f~~i~~~~i~~ll~f~~~va 314 (617)
-+ ..+|+... ..|+..++.=+...+-.|+..+.
T Consensus 153 t~~~f~~~F~~~~---~~~~S~lV~Wa~~eve~f~~l~~ 188 (235)
T 2d2s_A 153 TVEDFQDIFKELG---AKISSILVDWCSDEVDNHFKLID 188 (235)
T ss_dssp HHHHHHHHSTTCC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC---cccccHHHHHHHHHHHHHHHHHH
Confidence 22 35776532 24555665555555566666653
No 5
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=26.55 E-value=41 Score=26.22 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhccChhhhHHHHHHHhhhcccccccCc
Q 041244 10 LAVARHIARTLGHNDDTMADDILQIFSNFDGRFSREK 46 (617)
Q Consensus 10 ~a~~~~l~~~L~ks~~~lt~~m~~iL~~~~~rl~~~~ 46 (617)
-++..+|...|...=..++..|..|.+++|+||+.+.
T Consensus 13 ~~aL~~L~~qL~~NFgAISSsi~dIy~rLdGRlaaLn 49 (77)
T 1zva_A 13 AQALNTLVKQLSSNFGAISSVLNDISGGRGGDISGIN 49 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchHHHHH
Confidence 3566777788887744888899999999999998875
No 6
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=20.25 E-value=37 Score=28.81 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHhcCCCCCCCCCCcccccCHHHHHHHHHHhhcCCC
Q 041244 565 LLLPAYGNFIVKFQNSPDICKHPERLIKYTVEDVEAQIDELFQGTG 610 (617)
Q Consensus 565 ~vvpaY~~F~~ky~~~~~~~kn~~KyiKYtpe~le~~L~~LF~g~~ 610 (617)
.||-.-|.||.+|+..+ .. ..-+|+....+.. |-+||-+.+
T Consensus 54 ~VI~flR~~Y~e~~~~P-~i---R~l~K~~~~~~s~-Ly~LFP~GP 94 (111)
T 1ji8_A 54 KLVKYLREYWETFGTCP-PI---KMVTKETGFSLEK-IYQLFPSGP 94 (111)
T ss_dssp HHHHHHHHHTTTTSCCC-CS---TTGGGGSCCCHHH-HHHHTTSCH
T ss_pred HHHHHHHHHHHHHCCCC-cH---HHHHHHHHHHHHH-HHHHCCCCH
Confidence 47788899999998775 23 3456666666665 999996654
No 7
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=19.85 E-value=38 Score=20.08 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=16.4
Q ss_pred ccChhhhHHHHHHHhhhcccc
Q 041244 21 GHNDDTMADDILQIFSNFDGR 41 (617)
Q Consensus 21 ~ks~~~lt~~m~~iL~~~~~r 41 (617)
+|.| +++..+.++|+.+|+.
T Consensus 6 ekak-evssalskvlskiddt 25 (26)
T 2ibf_B 6 EKAK-EVSSALSKVLSKIDDT 25 (26)
T ss_dssp HHHH-HHHHHHHHHHHTSCCC
T ss_pred HHHH-HHHHHHHHHHHhhccC
Confidence 4677 8888999999998863
No 8
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=19.18 E-value=66 Score=19.76 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 041244 525 SLKEKLKLFYSYFDETCK 542 (617)
Q Consensus 525 ~iKekfk~FN~~Fee~~~ 542 (617)
.+|++|+.|-.+|-+-..
T Consensus 6 k~keklKkf~~~lk~k~~ 23 (26)
T 2pco_A 6 MWRRKLKKLRNALKKKLK 23 (26)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 468999999998876543
No 9
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=17.61 E-value=83 Score=28.40 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhccceEecCHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCCCCCCCCcccccCHHHHHHHHHHh
Q 041244 533 FYSYFDETCKTQSSWVVFDEQLREELKIAITKLLLPAYGNFIVKFQNSPDICKHPERLIKYTVEDVEAQIDEL 605 (617)
Q Consensus 533 FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~vvpaY~~F~~ky~~~~~~~kn~~KyiKYtpe~le~~L~~L 605 (617)
|---.-++.-.|++|. .|.|+|.+|+++|. +|+...+-++++|+.+|..+
T Consensus 32 ~~vLVs~ILsqQT~~~----------------~v~~~~~~l~~~~p-------t~~~la~a~~~el~~~i~~l 81 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGK----------------MAIPVLWKFLEKYP-------SAEVARTADWRDVSELLKPL 81 (161)
T ss_dssp HHHHHHHHHTTTSCHH----------------HHHHHHHHHHHHSC-------SHHHHTTSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhCcHH----------------HHHHHHHHHHHHCC-------CHHHHhccChHhHHhHhhhc
Confidence 4445567777777766 78999999999985 35778888999999998876
No 10
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=16.67 E-value=70 Score=24.97 Aligned_cols=16 Identities=44% Similarity=0.684 Sum_probs=14.4
Q ss_pred ccCHHHHHHHHHHhhc
Q 041244 592 KYTVEDVEAQIDELFQ 607 (617)
Q Consensus 592 KYtpe~le~~L~~LF~ 607 (617)
||+-+++|.+|++++.
T Consensus 6 KYsd~qvE~ll~eli~ 21 (76)
T 2jr2_A 6 KYSNERVEKIIQDLLD 21 (76)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 6899999999999874
Done!