Query 041246
Match_columns 637
No_of_seqs 351 out of 2922
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.9 4.8E-27 1E-31 241.9 11.6 325 293-637 138-466 (483)
2 KOG4341 F-box protein containi 99.9 2.7E-27 5.9E-32 243.7 9.8 324 293-635 110-438 (483)
3 cd00116 LRR_RI Leucine-rich re 99.7 2.5E-14 5.5E-19 150.3 25.7 278 305-597 9-316 (319)
4 cd00116 LRR_RI Leucine-rich re 99.6 7E-14 1.5E-18 147.0 22.7 270 350-633 21-317 (319)
5 KOG1947 Leucine rich repeat pr 99.6 4.9E-15 1.1E-19 164.4 12.9 253 352-607 161-446 (482)
6 KOG2120 SCF ubiquitin ligase, 99.6 8E-15 1.7E-19 146.0 11.8 287 261-592 98-391 (419)
7 KOG1947 Leucine rich repeat pr 99.6 6.6E-15 1.4E-19 163.4 11.8 257 321-598 188-462 (482)
8 KOG2120 SCF ubiquitin ligase, 99.6 4.2E-15 9.2E-20 148.0 7.9 205 293-513 185-390 (419)
9 PLN00113 leucine-rich repeat r 99.4 1.2E-12 2.7E-17 158.4 11.7 251 321-599 93-343 (968)
10 PLN00113 leucine-rich repeat r 99.3 3.3E-12 7.2E-17 154.7 10.2 59 561-632 379-437 (968)
11 KOG4194 Membrane glycoprotein 99.2 2.8E-12 6E-17 137.8 0.4 105 483-598 292-402 (873)
12 KOG4194 Membrane glycoprotein 99.2 5E-12 1.1E-16 135.9 -0.1 199 378-598 173-375 (873)
13 PLN03210 Resistant to P. syrin 99.2 1.1E-10 2.3E-15 143.2 11.2 131 484-628 778-909 (1153)
14 KOG1909 Ran GTPase-activating 99.1 1.1E-09 2.5E-14 112.0 16.6 268 293-587 30-324 (382)
15 PLN03210 Resistant to P. syrin 99.1 6.5E-11 1.4E-15 145.1 6.8 280 293-606 611-911 (1153)
16 KOG1909 Ran GTPase-activating 99.1 1.1E-09 2.5E-14 112.0 13.9 255 321-600 30-310 (382)
17 KOG0444 Cytoskeletal regulator 98.9 4E-11 8.6E-16 129.6 -5.6 131 457-602 221-353 (1255)
18 KOG3207 Beta-tubulin folding c 98.8 2.3E-10 5E-15 119.9 -2.7 165 350-524 144-315 (505)
19 KOG3207 Beta-tubulin folding c 98.8 1.5E-09 3.3E-14 113.8 0.8 215 348-599 117-337 (505)
20 KOG3665 ZYG-1-like serine/thre 98.7 2.2E-07 4.7E-12 107.1 15.1 263 240-516 2-281 (699)
21 KOG0444 Cytoskeletal regulator 98.5 5E-09 1.1E-13 113.7 -3.5 230 377-631 102-347 (1255)
22 KOG3665 ZYG-1-like serine/thre 98.4 1.3E-06 2.7E-11 100.9 10.7 43 559-602 247-289 (699)
23 KOG0618 Serine/threonine phosp 98.3 4.1E-07 8.9E-12 103.5 3.0 225 351-600 240-488 (1081)
24 PRK15387 E3 ubiquitin-protein 98.2 8.8E-07 1.9E-11 102.8 5.3 241 294-607 223-463 (788)
25 PRK15387 E3 ubiquitin-protein 98.1 2.3E-06 4.9E-11 99.5 5.1 224 293-583 242-465 (788)
26 KOG0618 Serine/threonine phosp 98.1 2.3E-06 4.9E-11 97.6 3.3 125 485-634 360-487 (1081)
27 COG5238 RNA1 Ran GTPase-activa 98.0 0.00022 4.8E-09 71.5 15.1 94 292-388 29-130 (388)
28 PF14580 LRR_9: Leucine-rich r 97.9 5.4E-06 1.2E-10 79.6 3.1 108 350-466 40-148 (175)
29 COG5238 RNA1 Ran GTPase-activa 97.9 0.00028 6E-09 70.8 14.4 245 350-599 28-314 (388)
30 PRK15370 E3 ubiquitin-protein 97.9 1.9E-05 4.2E-10 92.1 6.6 100 484-599 325-426 (754)
31 PRK15370 E3 ubiquitin-protein 97.8 6.1E-05 1.3E-09 88.0 8.7 241 294-583 179-435 (754)
32 KOG2982 Uncharacterized conser 97.7 3E-05 6.6E-10 78.4 4.5 212 347-570 66-287 (418)
33 KOG2982 Uncharacterized conser 97.7 1.1E-05 2.4E-10 81.6 0.9 212 295-524 47-263 (418)
34 KOG4237 Extracellular matrix p 97.6 8.5E-06 1.8E-10 85.2 -1.7 122 506-633 270-396 (498)
35 PF14580 LRR_9: Leucine-rich r 97.6 1.5E-05 3.3E-10 76.5 0.0 64 457-524 63-127 (175)
36 KOG3864 Uncharacterized conser 97.6 3.7E-05 8.1E-10 73.9 2.6 90 512-604 103-192 (221)
37 KOG4658 Apoptotic ATPase [Sign 97.6 6.4E-05 1.4E-09 89.2 4.9 66 508-576 715-784 (889)
38 KOG1259 Nischarin, modulator o 97.4 4.5E-05 9.7E-10 77.2 0.9 209 370-599 174-410 (490)
39 KOG3864 Uncharacterized conser 97.3 0.00032 7E-09 67.6 5.2 84 433-520 103-186 (221)
40 KOG1259 Nischarin, modulator o 97.2 0.00011 2.4E-09 74.5 0.3 124 431-573 284-410 (490)
41 KOG4658 Apoptotic ATPase [Sign 97.1 0.0005 1.1E-08 81.8 4.9 234 349-604 542-786 (889)
42 KOG0472 Leucine-rich repeat pr 96.6 0.00072 1.6E-08 71.2 1.4 38 559-599 502-539 (565)
43 KOG4308 LRR-containing protein 96.6 0.0011 2.3E-08 73.8 2.3 117 457-576 203-332 (478)
44 KOG1859 Leucine-rich repeat pr 96.5 0.0004 8.6E-09 77.9 -1.5 205 370-600 76-291 (1096)
45 KOG1859 Leucine-rich repeat pr 96.2 0.0014 3E-08 73.8 0.5 184 309-524 74-268 (1096)
46 KOG2739 Leucine-rich acidic nu 96.2 0.0011 2.4E-08 66.4 -0.5 88 378-467 65-152 (260)
47 KOG4237 Extracellular matrix p 96.2 0.00043 9.3E-09 72.8 -3.5 255 321-604 67-337 (498)
48 PRK15386 type III secretion pr 96.1 0.0061 1.3E-07 65.9 4.8 139 315-494 48-187 (426)
49 PRK15386 type III secretion pr 96.1 0.0051 1.1E-07 66.5 4.2 58 350-418 50-107 (426)
50 smart00367 LRR_CC Leucine-rich 95.9 0.0081 1.8E-07 38.5 2.8 23 562-584 2-24 (26)
51 KOG0472 Leucine-rich repeat pr 95.8 0.0041 8.9E-08 65.7 1.7 106 507-632 432-537 (565)
52 KOG2123 Uncharacterized conser 95.5 0.0044 9.5E-08 62.6 0.5 79 458-545 19-97 (388)
53 smart00367 LRR_CC Leucine-rich 95.1 0.022 4.8E-07 36.4 2.8 23 483-505 1-23 (26)
54 KOG4308 LRR-containing protein 94.9 0.014 3.1E-07 65.0 2.4 285 309-604 105-420 (478)
55 PF13855 LRR_8: Leucine rich r 94.6 0.0026 5.6E-08 49.7 -3.2 60 458-521 1-60 (61)
56 KOG2123 Uncharacterized conser 94.2 0.022 4.8E-07 57.7 1.7 103 352-464 19-123 (388)
57 KOG0617 Ras suppressor protein 93.8 0.00066 1.4E-08 63.8 -9.3 131 426-573 51-184 (264)
58 KOG2739 Leucine-rich acidic nu 93.6 0.027 5.9E-07 56.6 0.9 91 348-441 61-153 (260)
59 PF12799 LRR_4: Leucine Rich r 93.5 0.069 1.5E-06 38.9 2.7 38 562-603 1-38 (44)
60 PF13855 LRR_8: Leucine rich r 92.7 0.007 1.5E-07 47.2 -3.8 38 484-523 1-38 (61)
61 PF12799 LRR_4: Leucine Rich r 92.7 0.12 2.5E-06 37.7 2.9 36 485-523 2-37 (44)
62 PLN03150 hypothetical protein; 92.7 0.14 3.1E-06 59.3 5.2 108 459-573 419-526 (623)
63 PLN03150 hypothetical protein; 92.6 0.19 4.1E-06 58.3 6.1 15 508-522 488-502 (623)
64 COG4886 Leucine-rich repeat (L 92.3 0.1 2.3E-06 56.6 3.3 169 406-599 117-288 (394)
65 KOG1644 U2-associated snRNP A' 91.2 0.14 3E-06 49.8 2.4 57 483-545 41-97 (233)
66 KOG0617 Ras suppressor protein 91.2 0.0023 4.9E-08 60.3 -9.4 106 406-523 80-186 (264)
67 PF13516 LRR_6: Leucine Rich r 88.9 0.27 5.8E-06 30.6 1.5 23 561-584 1-23 (24)
68 COG4886 Leucine-rich repeat (L 88.8 0.25 5.4E-06 53.7 2.3 170 378-573 116-288 (394)
69 PF13516 LRR_6: Leucine Rich r 88.5 0.33 7.2E-06 30.2 1.8 21 510-530 2-22 (24)
70 KOG0531 Protein phosphatase 1, 88.5 0.1 2.2E-06 57.3 -0.9 105 457-574 94-198 (414)
71 KOG1644 U2-associated snRNP A' 85.4 0.27 5.9E-06 47.9 0.2 39 348-388 60-98 (233)
72 smart00368 LRR_RI Leucine rich 80.8 2.2 4.9E-05 27.7 3.1 23 510-532 2-24 (28)
73 smart00368 LRR_RI Leucine rich 79.4 2.1 4.7E-05 27.7 2.6 23 562-585 2-24 (28)
74 KOG0531 Protein phosphatase 1, 76.2 0.6 1.3E-05 51.3 -1.2 81 349-441 115-196 (414)
75 KOG3763 mRNA export factor TAP 73.6 5.5 0.00012 44.5 5.4 66 455-522 215-282 (585)
76 KOG4579 Leucine-rich repeat (L 72.0 1.7 3.7E-05 40.1 0.9 84 485-573 28-111 (177)
77 KOG3763 mRNA export factor TAP 61.1 14 0.0003 41.5 5.3 88 347-437 213-307 (585)
78 PF07723 LRR_2: Leucine Rich R 57.5 8.6 0.00019 24.6 1.8 26 563-588 1-26 (26)
79 PF13504 LRR_7: Leucine rich r 57.4 7.1 0.00015 22.2 1.3 12 511-522 2-13 (17)
80 KOG4579 Leucine-rich repeat (L 57.4 4.8 0.0001 37.2 0.9 38 483-523 76-113 (177)
81 cd03742 SOCS_Rab40 SOCS (suppr 54.6 25 0.00053 25.6 3.9 33 239-272 2-36 (43)
82 KOG0532 Leucine-rich repeat (L 40.8 5.2 0.00011 44.9 -1.8 37 485-524 212-248 (722)
83 cd03737 SOCS_SOCS3 SOCS (suppr 33.9 63 0.0014 23.4 3.4 30 239-268 2-31 (42)
84 PF00560 LRR_1: Leucine Rich R 32.0 19 0.00041 21.8 0.4 12 512-523 2-13 (22)
85 PF11216 DUF3012: Protein of u 31.3 14 0.0003 24.9 -0.3 14 65-78 18-31 (32)
86 cd03735 SOCS_SOCS1 SOCS (suppr 31.2 1.1E+02 0.0024 22.2 4.3 32 239-271 2-35 (43)
87 PF07735 FBA_2: F-box associat 25.6 3.1E+02 0.0067 21.3 6.7 54 536-595 11-69 (70)
88 smart00369 LRR_TYP Leucine-ric 24.3 55 0.0012 20.3 1.6 14 510-523 2-15 (26)
89 smart00370 LRR Leucine-rich re 24.3 55 0.0012 20.3 1.6 14 510-523 2-15 (26)
90 KOG0532 Leucine-rich repeat (L 23.0 9.1 0.0002 43.1 -3.6 103 458-573 143-245 (722)
91 cd03734 SOCS_CIS1 SOCS (suppre 21.4 2.4E+02 0.0052 20.3 4.5 31 239-270 2-32 (41)
92 KOG3735 Tropomodulin and leiom 20.4 1.3E+02 0.0027 32.0 4.1 78 294-375 199-277 (353)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.94 E-value=4.8e-27 Score=241.95 Aligned_cols=325 Identities=23% Similarity=0.375 Sum_probs=240.1
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
+.+++|.+.+|-.+.+..+..+...| ||+.+|+|.+|.. ++|..+..+. ..|+.|++|+|..|..+++..+..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~C--pnIehL~l~gc~~-iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNC--PNIEHLALYGCKK-ITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcchhhHHhhhC--Cchhhhhhhccee-ccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHH
Confidence 35677777777777777777777777 7777777777774 6666655443 377777777777777777777777
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEI 452 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l 452 (637)
++..|++|++|++++|+.++..++..+...|. .++.+.+.+|.......+...-..++-+..+++-.|..++|..+..+
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~-~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCK-ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccch-hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 77777777777777777777777777777776 57777667777666666565556666677777777777777776553
Q ss_pred HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCC-CCHHHHHHHH
Q 041246 453 VRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNN-FSDEALAAFL 531 (637)
Q Consensus 453 l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~-ltd~~l~~l~ 531 (637)
...+..|+.|..++|..++|..+.++.++|++|+.|.+.+|..+++.++..+..+++.|+.|++..+. ++|..+..+
T Consensus 290 -~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl- 367 (483)
T KOG4341|consen 290 -ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL- 367 (483)
T ss_pred -hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-
Confidence 34477888888888888888888888888888888888888888888888888888888888887765 444445544
Q ss_pred HhcCCCccEEEcCCCCCCCHHHHHHHHh---CCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhc
Q 041246 532 EVSGDSLTELSLNHVRGVGLNTALSLAK---CSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNG 608 (637)
Q Consensus 532 ~~~~~~L~~L~Ls~c~~l~~~~l~~l~~---~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ 608 (637)
...|+.|+.|+|+.|..++|.++..+.. ....|+.|.|++|+.+++..++.+. .|+.|+++++.+|..++...+..
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHH
Confidence 4567888888888888888887766543 4467888888888888888887764 68888888888888888887764
Q ss_pred ccccceeeecCCCCCCCCeeeccCCCCCC
Q 041246 609 HSNSMVQIIGLPLTPALKHIQVLEPQHTP 637 (637)
Q Consensus 609 ls~~~l~i~g~~~lp~L~~L~l~~~~~~~ 637 (637)
+ ..++|+++...+..|-..|
T Consensus 447 ~---------~~~lp~i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 447 F---------ATHLPNIKVHAYFAPVTPP 466 (483)
T ss_pred H---------HhhCccceehhhccCCCCc
Confidence 2 3456777776666665554
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.94 E-value=2.7e-27 Score=243.71 Aligned_cols=324 Identities=25% Similarity=0.374 Sum_probs=279.7
Q ss_pred CCCcEEEEcCCC-CCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHH
Q 041246 293 GSPTEIRLNDCS-EINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLS 371 (637)
Q Consensus 293 ~~l~~L~Ls~c~-~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~ 371 (637)
.+.+.+++-... .+.......+.++|+ ..|+.|.|.+|.. +.+..+..+ ..+||++++|.+.+|..+++..+.
T Consensus 110 ~~~q~idL~t~~rDv~g~VV~~~~~Rcg-g~lk~LSlrG~r~-v~~sslrt~----~~~CpnIehL~l~gc~~iTd~s~~ 183 (483)
T KOG4341|consen 110 SCWQHIDLFTFQRDVDGGVVENMISRCG-GFLKELSLRGCRA-VGDSSLRTF----ASNCPNIEHLALYGCKKITDSSLL 183 (483)
T ss_pred ccceeeehhcchhcCCCcceehHhhhhc-ccccccccccccc-CCcchhhHH----hhhCCchhhhhhhcceeccHHHHH
Confidence 356677766542 233355677888886 7899999999976 777777654 449999999999999999999999
Q ss_pred HHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHH
Q 041246 372 KLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTE 451 (637)
Q Consensus 372 ~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ 451 (637)
.+...|+.|++|++..|..+|+..+..+++.|+ +|++|+++.|+.++..++....+.+..|+.+.+.+|....++.+..
T Consensus 184 sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~-kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~ 262 (483)
T KOG4341|consen 184 SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR-KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK 262 (483)
T ss_pred HHHHhcchhhhhhhcccchhHHHHHHHHHHhhh-hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH
Confidence 999999999999999999999999999999998 9999999999999998888899999999999888998888887765
Q ss_pred HHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCC-CCHHHHHHH
Q 041246 452 IVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNN-FSDEALAAF 530 (637)
Q Consensus 452 ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~-ltd~~l~~l 530 (637)
+...++-+..+++..|..+||..+..+..+|..|+.|..++|..+++..+.+|..++++|+.|-+.+|+ +++.++..+
T Consensus 263 -~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l 341 (483)
T KOG4341|consen 263 -AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML 341 (483)
T ss_pred -HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh
Confidence 345578888899999999999999999999999999999999999999999999999999999998775 999999877
Q ss_pred HHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHh---cCCCcCEEEeecCCCCChhhhh
Q 041246 531 LEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVD---NCSLLRLLKLFGCSQITNVFLN 607 (637)
Q Consensus 531 ~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~---~cp~L~~L~L~~C~~ltd~~l~ 607 (637)
. ..++.|+.+++.+|..+++.++.+++.+|+.|+.|.|++|..+||.++..+.. +...|+.|++.+|+.+++..++
T Consensus 342 ~-rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 342 G-RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred h-cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 4 56799999999999999998899999999999999999999999998877653 3568999999999999999887
Q ss_pred cccccceeeecCCCCCCCCeeeccCCCC
Q 041246 608 GHSNSMVQIIGLPLTPALKHIQVLEPQH 635 (637)
Q Consensus 608 ~ls~~~l~i~g~~~lp~L~~L~l~~~~~ 635 (637)
. +..|++|+++++.+.+.
T Consensus 421 ~----------l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 421 H----------LSICRNLERIELIDCQD 438 (483)
T ss_pred H----------HhhCcccceeeeechhh
Confidence 5 34567888877766543
No 3
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=2.5e-14 Score=150.35 Aligned_cols=278 Identities=23% Similarity=0.246 Sum_probs=140.1
Q ss_pred CCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCC-HHHHHHH---HHhCCCC
Q 041246 305 EINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLT-DFGLSKL---ARSASAL 380 (637)
Q Consensus 305 ~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~is-d~~l~~L---~~~~~~L 380 (637)
.++...+..++... .+|+.|+|+++. +++.....+.. .....++|++|+++++..-. ...+..+ ...+++|
T Consensus 9 ~l~~~~~~~~~~~l--~~L~~l~l~~~~--l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L 83 (319)
T cd00116 9 LLKTERATELLPKL--LCLQVLRLEGNT--LGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83 (319)
T ss_pred cccccchHHHHHHH--hhccEEeecCCC--CcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCce
Confidence 34444444555544 667777777766 55544443332 34466777777777653221 2333322 2335677
Q ss_pred CEEEecCCCCCCh---hHHHHHHHhhcccceEEeccCCCccchhc---HHHHHhcC-CCCcEEeccCCcCCCHHHHH---
Q 041246 381 QSVNLSQCSLLTN---EGINLLVKHLKSTLRVLYIDHCQNIDAVS---MLPALRKL-NCLEVLSVAGIETVDDYFVT--- 450 (637)
Q Consensus 381 ~~L~Ls~c~~ls~---~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~---l~~~l~~l-~~L~~L~Ls~~~~l~~~~l~--- 450 (637)
+.|+|++|. +.. ..+..+... ++|++|++++|. +...+ +...+..+ ++|+.|+++++. ++.....
T Consensus 84 ~~L~l~~~~-~~~~~~~~~~~l~~~--~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~ 158 (319)
T cd00116 84 QELDLSDNA-LGPDGCGVLESLLRS--SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALA 158 (319)
T ss_pred eEEEccCCC-CChhHHHHHHHHhcc--CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHH
Confidence 777777763 332 222222222 147777777663 32211 12233444 666777776653 3322221
Q ss_pred HHHHHcCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEEcCCCCCCHHHHHHH---HhcCCCCCEEEeccCCCCH
Q 041246 451 EIVRAHCLNMRQLVLANCGQLTDRALKFVGK---KCSRLCALDLSHLDNLTDATVQYL---ADGCRSICSLKLCRNNFSD 524 (637)
Q Consensus 451 ~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~---~c~~L~~L~L~~c~~itd~~l~~L---~~~~~~L~~L~Ls~~~ltd 524 (637)
..+. .+++|++|++++| .+++.++..+.. .+++|+.|++++| .+++.+...+ ...+++|+.|++++|.+++
T Consensus 159 ~~~~-~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 159 KALR-ANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHH-hCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 1121 2456777777765 455554444432 2346777777764 5555444333 2345667777777777666
Q ss_pred HHHHHHHHhc---CCCccEEEcCCCCCCCHHHHHH---HHhCCCCcceEeeecCCCCCHHHHHHHHh---cC-CCcCEEE
Q 041246 525 EALAAFLEVS---GDSLTELSLNHVRGVGLNTALS---LAKCSRNLLSLDLSWCRFIKDEALGFIVD---NC-SLLRLLK 594 (637)
Q Consensus 525 ~~l~~l~~~~---~~~L~~L~Ls~c~~l~~~~l~~---l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~---~c-p~L~~L~ 594 (637)
.++..+.... .+.|++|++++|. +++.+... ....+++|++|++++|. +++.+...++. .. +.|+.|+
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcc
Confidence 5555443321 2456666666553 33322222 22334566666666665 55554433331 12 3555555
Q ss_pred eec
Q 041246 595 LFG 597 (637)
Q Consensus 595 L~~ 597 (637)
+.+
T Consensus 314 ~~~ 316 (319)
T cd00116 314 VKD 316 (319)
T ss_pred cCC
Confidence 543
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=7e-14 Score=146.99 Aligned_cols=270 Identities=22% Similarity=0.200 Sum_probs=180.1
Q ss_pred CCCCccEEEecCCCCCCHHHHHHH---HHhCCCCCEEEecCCCCCC--hhHHHHHHHhhc--ccceEEeccCCCccch--
Q 041246 350 SLPALTTISLTGAYQLTDFGLSKL---ARSASALQSVNLSQCSLLT--NEGINLLVKHLK--STLRVLYIDHCQNIDA-- 420 (637)
Q Consensus 350 ~l~~L~~L~Ls~~~~isd~~l~~L---~~~~~~L~~L~Ls~c~~ls--~~~l~~L~~~~~--~~L~~L~Ls~c~~i~~-- 420 (637)
.+.+|+.|+++++. +++.++..+ ....++|++|+++++ .+. ...+..+...+. ++|+.|++++|.....
T Consensus 21 ~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 55669999999974 666554444 445678999999986 444 344443332221 3899999999854321
Q ss_pred hcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH---HHHcCCCccEEEecCCCCCCHHHHHH---HHhcCCCCCEEEEcCC
Q 041246 421 VSMLPALRKLNCLEVLSVAGIETVDDYFVTEI---VRAHCLNMRQLVLANCGQLTDRALKF---VGKKCSRLCALDLSHL 494 (637)
Q Consensus 421 ~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l---l~~~~~~L~~L~Ls~c~~ltd~~l~~---l~~~c~~L~~L~L~~c 494 (637)
..+...... ++|++|+++++. +++.++..+ +....++|+.|++++|. ++..+... ....+++|+.|++++|
T Consensus 99 ~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 99 GVLESLLRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHhcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 112222233 669999999964 554444332 22222899999999984 66443333 3345778999999995
Q ss_pred CCCCHHHHHHHHh---cCCCCCEEEeccCCCCHHHHHHHHH--hcCCCccEEEcCCCCCCCHHHHHHHHhC----CCCcc
Q 041246 495 DNLTDATVQYLAD---GCRSICSLKLCRNNFSDEALAAFLE--VSGDSLTELSLNHVRGVGLNTALSLAKC----SRNLL 565 (637)
Q Consensus 495 ~~itd~~l~~L~~---~~~~L~~L~Ls~~~ltd~~l~~l~~--~~~~~L~~L~Ls~c~~l~~~~l~~l~~~----~~~L~ 565 (637)
.+++.++..+.. .+++|+.|+|++|.+++.++..+.. ..+++|++|++++| .+++..+..++.. .+.|+
T Consensus 176 -~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~ 253 (319)
T cd00116 176 -GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLL 253 (319)
T ss_pred -CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCce
Confidence 788766665543 3469999999999999887665533 23478999999997 4777666666554 37999
Q ss_pred eEeeecCCCCCHHHHHHHHh---cCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccCC
Q 041246 566 SLDLSWCRFIKDEALGFIVD---NCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLEP 633 (637)
Q Consensus 566 ~L~Ls~c~~ltd~~l~~l~~---~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~~ 633 (637)
+|++++|. +++.+...+.. .+++|+.|++.+| .+++.+...... .+. + .-+.|+.|++.+.
T Consensus 254 ~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~-~~~---~-~~~~~~~~~~~~~ 317 (319)
T cd00116 254 TLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAE-SLL---E-PGNELESLWVKDD 317 (319)
T ss_pred EEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHH-HHh---h-cCCchhhcccCCC
Confidence 99999997 88766655543 4568999999997 577665442210 011 1 1157777777654
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.60 E-value=4.9e-15 Score=164.43 Aligned_cols=253 Identities=31% Similarity=0.432 Sum_probs=151.9
Q ss_pred CCccEEEecCCCC-CCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccC-CCccchhc--HHHHH
Q 041246 352 PALTTISLTGAYQ-LTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDH-CQNIDAVS--MLPAL 427 (637)
Q Consensus 352 ~~L~~L~Ls~~~~-isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~-c~~i~~~~--l~~~l 427 (637)
..++.+.+..+.. +.......+...++.|+.|.+.+|..+++.++..++..++ +|+.|++++ |..+.... .....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCP-NLEELDLSGCCLLITLSPLLLLLLL 239 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCc-hhheecccCcccccccchhHhhhhh
Confidence 3445555544432 3344444555556777777777766666666666666565 677777766 22222221 23345
Q ss_pred hcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHh
Q 041246 428 RKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLAD 507 (637)
Q Consensus 428 ~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~ 507 (637)
..+++|++|+++++..+++.++..+... |++|++|.+.+|..+++.++..++..|++|++|+|++|..+++.++..+..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~-c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASR-CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhh-CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 6667777888877766777777665443 778888887777777888888888888888888888887777777777777
Q ss_pred cCCCCCEEEeccCC----CCHHHHHHH-----------HHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCc--------
Q 041246 508 GCRSICSLKLCRNN----FSDEALAAF-----------LEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNL-------- 564 (637)
Q Consensus 508 ~~~~L~~L~Ls~~~----ltd~~l~~l-----------~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L-------- 564 (637)
+|++|+.|.+.... +++.++... ....+++|+.+.|..|. +.+.....+...|++|
T Consensus 319 ~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~ 397 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRL 397 (482)
T ss_pred hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHh
Confidence 77777776654322 444333222 22334555555555555 4443333333444433
Q ss_pred ------ceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhh
Q 041246 565 ------LSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLN 607 (637)
Q Consensus 565 ------~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~ 607 (637)
+.|+++.|..+++..+......|..+..+++.+|+.++...+.
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 5556666655555555555444555666666666655555543
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8e-15 Score=146.05 Aligned_cols=287 Identities=21% Similarity=0.261 Sum_probs=184.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCH-----HHHHHhhC-CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCC
Q 041246 261 LELVPDFLRHKLSQIVRKKRKMNA-----RFLELLAS-GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRI 334 (637)
Q Consensus 261 L~~Lp~~l~~~l~~~ls~~~~l~~-----~~l~ll~~-~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~ 334 (637)
...+|+++...+...+.+..-+.- ++.++-.. ...+.+++.+ ..+.+..+..+.+ +....+.+....
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~-r~i~p~~l~~l~~----rgV~v~Rlar~~-- 170 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTG-RNIHPDVLGRLLS----RGVIVFRLARSF-- 170 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCC-CccChhHHHHHHh----CCeEEEEcchhh--
Confidence 455777776665554443222111 11111111 2456788877 5678888888877 567777766433
Q ss_pred CChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccC
Q 041246 335 LTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDH 414 (637)
Q Consensus 335 l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~ 414 (637)
+.++.+...+. ..-..|++|+|+. ..|+...+..+.+.|..|+.|.|.+ ..++|.-...++++- +|+.|+|+.
T Consensus 171 ~~~prlae~~~---~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~--~L~~lnlsm 243 (419)
T KOG2120|consen 171 MDQPRLAEHFS---PFRSRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNS--NLVRLNLSM 243 (419)
T ss_pred hcCchhhhhhh---hhhhhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccc--cceeecccc
Confidence 33333332221 1224589999988 4688888888889999999999998 488888888888763 788888888
Q ss_pred CCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCC-CCCHHHHHHHHhcCCCCCEEEEcC
Q 041246 415 CQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCG-QLTDRALKFVGKKCSRLCALDLSH 493 (637)
Q Consensus 415 c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~-~ltd~~l~~l~~~c~~L~~L~L~~ 493 (637)
|..++..++...+.+|..|..|++++|....+. +..++....++|+.|+|+||. .+.+..+..+.+.||+|..|+|+.
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 888887777777777777777777776544443 555555556777777777764 234445555666666666666666
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 494 LDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 494 c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
|..+++..+..+. .+ +.|++|+++.|..|....+..+ ...|+|.+|++.+|
T Consensus 323 ~v~l~~~~~~~~~-kf--------------------------~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~- 373 (419)
T KOG2120|consen 323 SVMLKNDCFQEFF-KF--------------------------NYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGC- 373 (419)
T ss_pred ccccCchHHHHHH-hc--------------------------chheeeehhhhcCCChHHeeee-ccCcceEEEEeccc-
Confidence 6666654333332 12 5666666666666665554443 34678888888877
Q ss_pred CCCHHHHHHHHhcCCCcCE
Q 041246 574 FIKDEALGFIVDNCSLLRL 592 (637)
Q Consensus 574 ~ltd~~l~~l~~~cp~L~~ 592 (637)
++|..++.+...||+|+.
T Consensus 374 -vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 374 -VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred -cCchHHHHHHHhCccccc
Confidence 477777777777777654
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.58 E-value=6.6e-15 Score=163.39 Aligned_cols=257 Identities=28% Similarity=0.375 Sum_probs=140.7
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecC-CCCCCHH--HHHHHHHhCCCCCEEEecCCCCCChhHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTG-AYQLTDF--GLSKLARSASALQSVNLSQCSLLTNEGIN 397 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~-~~~isd~--~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~ 397 (637)
++|+.|.+..|.. +++..+.. ....+++|+.|++++ +..+... ....+...|++|+.|++++|..+++.++.
T Consensus 188 ~~L~~l~l~~~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 188 PLLKRLSLSGCSK-ITDDSLDA----LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred chhhHhhhccccc-CChhhHHH----HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 5555555555543 33322221 222455555555544 2222211 12233444455555555555445555555
Q ss_pred HHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHH
Q 041246 398 LLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALK 477 (637)
Q Consensus 398 ~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~ 477 (637)
.++..|+ +|+.|.+.+|..+++.++......++.|++|++++|..+++.++..+. ..|++|+.|.+..+..
T Consensus 263 ~l~~~c~-~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~-~~c~~l~~l~~~~~~~------- 333 (482)
T KOG1947|consen 263 ALASRCP-NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL-KNCPNLRELKLLSLNG------- 333 (482)
T ss_pred HHHhhCC-CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH-HhCcchhhhhhhhcCC-------
Confidence 5555444 555555544544444444445555555555555555444444444442 2244444443333221
Q ss_pred HHHhcCCCCCEEEEcCCCCCC-HHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCC--------------ccEEE
Q 041246 478 FVGKKCSRLCALDLSHLDNLT-DATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDS--------------LTELS 542 (637)
Q Consensus 478 ~l~~~c~~L~~L~L~~c~~it-d~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~--------------L~~L~ 542 (637)
|+.++.+.+.+|..+. +........+|++|+.+.|..+..++.+....+. .|+. ++.|.
T Consensus 334 -----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~-gc~~l~~~l~~~~~~~~~l~~L~ 407 (482)
T KOG1947|consen 334 -----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLR-GCPNLTESLELRLCRSDSLRVLN 407 (482)
T ss_pred -----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhc-CCcccchHHHHHhccCCccceEe
Confidence 3333333333333333 3444455577899999999877766666433221 2333 68999
Q ss_pred cCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 543 LNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 543 Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
++.|..+++..+......+.++..+++.+|+.++...+..+...+ .+..+.+..+
T Consensus 408 l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 462 (482)
T KOG1947|consen 408 LSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASNC-DLISLDVGLK 462 (482)
T ss_pred cccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhccc-cccccccccc
Confidence 999999998888777665889999999999999999888776655 5555555444
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.2e-15 Score=147.97 Aligned_cols=205 Identities=20% Similarity=0.295 Sum_probs=163.6
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|+|+. +.++...+..+++.| ..|+.|.|.+.. ++|.....+. .-.+|+.|+|++|..++..++..
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C--~kLk~lSlEg~~--LdD~I~~~iA-----kN~~L~~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQC--SKLKNLSLEGLR--LDDPIVNTIA-----KNSNLVRLNLSMCSGFTENALQL 254 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHH--Hhhhhccccccc--cCcHHHHHHh-----ccccceeeccccccccchhHHHH
Confidence 4578899998 568899999999999 999999999866 6776655432 66899999999999999999999
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCc-cchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQN-IDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTE 451 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~-i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ 451 (637)
+...|+.|.+|+|+||...++. +..+..+...+|+.|+|+||.. +....+.....+||+|.+|||+.+..+++..+..
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred HHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence 9999999999999999544444 7776666777999999999853 4444455566899999999999998888877666
Q ss_pred HHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCC
Q 041246 452 IVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSIC 513 (637)
Q Consensus 452 ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~ 513 (637)
++. ++.|++|.+++|..|....+-.+.+ .|.|.+|++.+| ++|.....+...+++|+
T Consensus 334 ~~k--f~~L~~lSlsRCY~i~p~~~~~l~s-~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 334 FFK--FNYLQHLSLSRCYDIIPETLLELNS-KPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred HHh--cchheeeehhhhcCCChHHeeeecc-CcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 543 7899999999999887765554433 688999999997 66666666666666554
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.38 E-value=1.2e-12 Score=158.36 Aligned_cols=251 Identities=19% Similarity=0.155 Sum_probs=113.9
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|+.|+|+++. ++.... ...+..+++|++|+|+++........ ..+++|++|+|++| .++......+.
T Consensus 93 ~~L~~L~Ls~n~--~~~~ip----~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~l~~L~~L~Ls~n-~~~~~~p~~~~ 161 (968)
T PLN00113 93 PYIQTINLSNNQ--LSGPIP----DDIFTTSSSLRYLNLSNNNFTGSIPR----GSIPNLETLDLSNN-MLSGEIPNDIG 161 (968)
T ss_pred CCCCEEECCCCc--cCCcCC----hHHhccCCCCCEEECcCCccccccCc----cccCCCCEEECcCC-cccccCChHHh
Confidence 677777776654 211111 11233566777777766532111110 22466666666665 33221112222
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG 480 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 480 (637)
.++ +|+.|++++|..... +...+.++++|++|+++++.. ....... + ..+++|++|+|++|. ++......+
T Consensus 162 -~l~-~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l-~~~~p~~-l-~~l~~L~~L~L~~n~-l~~~~p~~l- 232 (968)
T PLN00113 162 -SFS-SLKVLDLGGNVLVGK--IPNSLTNLTSLEFLTLASNQL-VGQIPRE-L-GQMKSLKWIYLGYNN-LSGEIPYEI- 232 (968)
T ss_pred -cCC-CCCEEECccCccccc--CChhhhhCcCCCeeeccCCCC-cCcCChH-H-cCcCCccEEECcCCc-cCCcCChhH-
Confidence 132 666666666532211 233445666666666665432 1111111 1 225666666666552 332212222
Q ss_pred hcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhC
Q 041246 481 KKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKC 560 (637)
Q Consensus 481 ~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~ 560 (637)
..+++|+.|++++| .++...... ...+++|+.|+|++|.++......+. ..++|++|+|++|.... . +......
T Consensus 233 ~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~-~-~p~~~~~ 306 (968)
T PLN00113 233 GGLTSLNHLDLVYN-NLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSG-E-IPELVIQ 306 (968)
T ss_pred hcCCCCCEEECcCc-eeccccChh-HhCCCCCCEEECcCCeeeccCchhHh--hccCcCEEECcCCeecc-C-CChhHcC
Confidence 23566666666664 333211111 23456666666666655432111111 12466666666543211 1 1112234
Q ss_pred CCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCC
Q 041246 561 SRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 561 ~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
+++|+.|++++|. ++...... ...+++|+.|++++|.
T Consensus 307 l~~L~~L~l~~n~-~~~~~~~~-~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 307 LQNLEILHLFSNN-FTGKIPVA-LTSLPRLQVLQLWSNK 343 (968)
T ss_pred CCCCcEEECCCCc-cCCcCChh-HhcCCCCCEEECcCCC
Confidence 5666666666654 33222222 2345666666666653
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.32 E-value=3.3e-12 Score=154.67 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=28.6
Q ss_pred CCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 561 SRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 561 ~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
+++|+.|++++|. ++...... ...|++|+.|++.+|. ++.... .....++.|+.|++++
T Consensus 379 ~~~L~~L~l~~n~-l~~~~p~~-~~~~~~L~~L~L~~n~-l~~~~p----------~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 379 SGNLFKLILFSNS-LEGEIPKS-LGACRSLRRVRLQDNS-FSGELP----------SEFTKLPLVYFLDISN 437 (968)
T ss_pred cCCCCEEECcCCE-ecccCCHH-HhCCCCCCEEECcCCE-eeeECC----------hhHhcCCCCCEEECcC
Confidence 3455555555554 32222222 2356666666666663 221100 0123467788887764
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.20 E-value=2.8e-12 Score=137.80 Aligned_cols=105 Identities=25% Similarity=0.288 Sum_probs=55.9
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC---HHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHh
Q 041246 483 CSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS---DEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAK 559 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt---d~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~ 559 (637)
+..|+.|+++. +.|........ +.|++|+.|+|+.|+++ +..+..+ ..|+.|.|+... ++.. ......
T Consensus 292 Lt~L~~L~lS~-NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf~~L-----~~Le~LnLs~Ns-i~~l-~e~af~ 362 (873)
T KOG4194|consen 292 LTSLEQLDLSY-NAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSFRVL-----SQLEELNLSHNS-IDHL-AEGAFV 362 (873)
T ss_pred cchhhhhccch-hhhheeecchh-hhcccceeEeccccccccCChhHHHHH-----HHhhhhcccccc-hHHH-HhhHHH
Confidence 34555555555 33333222222 34667777777776544 3344443 466677776532 2211 111223
Q ss_pred CCCCcceEeeecCCC---CCHHHHHHHHhcCCCcCEEEeecC
Q 041246 560 CSRNLLSLDLSWCRF---IKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 560 ~~~~L~~L~Ls~c~~---ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
++.+|++|+|++|.- |.|.+ ..+.++++|++|.+.|+
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa--~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAA--VAFNGLPSLRKLRLTGN 402 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecch--hhhccchhhhheeecCc
Confidence 567788888777651 23322 23356788888888876
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.15 E-value=5e-12 Score=135.87 Aligned_cols=199 Identities=21% Similarity=0.197 Sum_probs=114.7
Q ss_pred CCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcC
Q 041246 378 SALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHC 457 (637)
Q Consensus 378 ~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~ 457 (637)
.+|++|+|+++ .++.-....+.. +. +|..|.|+.+ .++... ...++++++|+.|+|.... +..-.... -..+
T Consensus 173 ~ni~~L~La~N-~It~l~~~~F~~-ln-sL~tlkLsrN-rittLp-~r~Fk~L~~L~~LdLnrN~-irive~lt--FqgL 244 (873)
T KOG4194|consen 173 VNIKKLNLASN-RITTLETGHFDS-LN-SLLTLKLSRN-RITTLP-QRSFKRLPKLESLDLNRNR-IRIVEGLT--FQGL 244 (873)
T ss_pred CCceEEeeccc-cccccccccccc-cc-hheeeecccC-cccccC-HHHhhhcchhhhhhccccc-eeeehhhh--hcCc
Confidence 34555555553 444333322222 11 4555566555 222221 3345567777777766521 21111111 1335
Q ss_pred CCccEEEecCCC--CCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcC
Q 041246 458 LNMRQLVLANCG--QLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSG 535 (637)
Q Consensus 458 ~~L~~L~Ls~c~--~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~ 535 (637)
++|+.|.|.++. .+.|..+. .|.+++.|+|.. ++++...-..+ .+++.|+.|+|+.|.|....+... ..+
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy----~l~kme~l~L~~-N~l~~vn~g~l-fgLt~L~~L~lS~NaI~rih~d~W--sft 316 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFY----GLEKMEHLNLET-NRLQAVNEGWL-FGLTSLEQLDLSYNAIQRIHIDSW--SFT 316 (873)
T ss_pred hhhhhhhhhhcCcccccCccee----eecccceeeccc-chhhhhhcccc-cccchhhhhccchhhhheeecchh--hhc
Confidence 667777666542 23333222 367888999988 56665443334 368889999999998765444443 246
Q ss_pred CCccEEEcCCCC--CCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 536 DSLTELSLNHVR--GVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 536 ~~L~~L~Ls~c~--~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
++|+.|+|+... .+....+. .+..|++|.|++|+ |+.-.-. .+.++.+|++|+|+++
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~----~L~~Le~LnLs~Ns-i~~l~e~-af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFR----VLSQLEELNLSHNS-IDHLAEG-AFVGLSSLHKLDLRSN 375 (873)
T ss_pred ccceeEeccccccccCChhHHH----HHHHhhhhcccccc-hHHHHhh-HHHHhhhhhhhcCcCC
Confidence 899999999743 23333333 35789999999998 6544333 3357889999999875
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.15 E-value=1.1e-10 Score=143.22 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=59.3
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCC-CCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCC
Q 041246 484 SRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNN-FSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSR 562 (637)
Q Consensus 484 ~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~-ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~ 562 (637)
++|+.|+|++|..+... ..-..++++|+.|+|++|. +.. +... ...++|+.|+|++|..+.. +....+
T Consensus 778 ~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls~C~~L~~--LP~~--~~L~sL~~L~Ls~c~~L~~-----~p~~~~ 846 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIENCINLET--LPTG--INLESLESLDLSGCSRLRT-----FPDIST 846 (1153)
T ss_pred ccchheeCCCCCCcccc--ChhhhCCCCCCEEECCCCCCcCe--eCCC--CCccccCEEECCCCCcccc-----cccccc
Confidence 45556666555333221 1112345666666666543 221 1000 0135666666666654432 111124
Q ss_pred CcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCee
Q 041246 563 NLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHI 628 (637)
Q Consensus 563 ~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L 628 (637)
+|+.|+|+++. ++.. ..-...+++|+.|+|.+|..++.........+.+....+..|++|+.+
T Consensus 847 nL~~L~Ls~n~-i~~i--P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 847 NISDLNLSRTG-IEEV--PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccCEeECCCCC-CccC--hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 55555555543 3321 112245667777777777666654333222333333333344444433
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-09 Score=112.01 Aligned_cols=268 Identities=22% Similarity=0.283 Sum_probs=119.7
Q ss_pred CCCcEEEEcCCCCCCHH---HHHHHHhhCCCCCeeEEEeecC--CCCCChHHHH--HHHHHhccCCCCccEEEecCCCCC
Q 041246 293 GSPTEIRLNDCSEINTD---DFTRIFGACDKKNLIVLQLDLC--GRILTENVII--NTIVTQNFSLPALTTISLTGAYQL 365 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~---~l~~l~~~c~~~nL~~L~Ls~~--~~~l~d~~l~--~il~~~~~~l~~L~~L~Ls~~~~i 365 (637)
..+++|+|++.+ +..+ .+...+..- ++|+..+++.. ++ ..+.... .++...+..++.|+.|+|+++- +
T Consensus 30 ~s~~~l~lsgnt-~G~EAa~~i~~~L~~~--~~L~~v~~sd~ftGR-~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~ 104 (382)
T KOG1909|consen 30 DSLTKLDLSGNT-FGTEAARAIAKVLASK--KELREVNLSDMFTGR-LKDEIPEALKMLSKALLGCPKLQKLDLSDNA-F 104 (382)
T ss_pred CceEEEeccCCc-hhHHHHHHHHHHHhhc--ccceeeehHhhhcCC-cHHHHHHHHHHHHHHHhcCCceeEeeccccc-c
Confidence 567778888754 3332 233344433 56777776652 22 2222211 1122244466777777777753 3
Q ss_pred CH---HHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCc
Q 041246 366 TD---FGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIE 442 (637)
Q Consensus 366 sd---~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~ 442 (637)
.. .++..+...|.+|++|.|.+| .++..+=..++.. |.+|.. ...+.+-++|+++......
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~a----l~~l~~-----------~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRA----LFELAV-----------NKKAASKPKLRVFICGRNR 168 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHH----HHHHHH-----------HhccCCCcceEEEEeeccc
Confidence 33 344455666777777777776 4554444433331 111100 0111233344444444321
Q ss_pred CCCH---HHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH---hcCCCCCEEEEcCCCCCCHHHHHHHH---hcCCCCC
Q 041246 443 TVDD---YFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG---KKCSRLCALDLSHLDNLTDATVQYLA---DGCRSIC 513 (637)
Q Consensus 443 ~l~~---~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~---~~c~~L~~L~L~~c~~itd~~l~~L~---~~~~~L~ 513 (637)
+.+ ..+...+.. .++|+.+.+..+ .|...++..++ .+|++|+.|+|.. +.++..+-.+++ ..+++|+
T Consensus 169 -len~ga~~~A~~~~~-~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 169 -LENGGATALAEAFQS-HPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred -cccccHHHHHHHHHh-ccccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchhe
Confidence 111 112222222 345555555442 23322222211 3455555555555 344443333332 2234455
Q ss_pred EEEeccCCCCHHHHHHHHH---hcCCCccEEEcCCCCCCCHHHHHHHH---hCCCCcceEeeecCCCC--CHHHHHHHHh
Q 041246 514 SLKLCRNNFSDEALAAFLE---VSGDSLTELSLNHVRGVGLNTALSLA---KCSRNLLSLDLSWCRFI--KDEALGFIVD 585 (637)
Q Consensus 514 ~L~Ls~~~ltd~~l~~l~~---~~~~~L~~L~Ls~c~~l~~~~l~~l~---~~~~~L~~L~Ls~c~~l--td~~l~~l~~ 585 (637)
.|+++.|.+.+.|..++.. -..|+|+.|.|.++. ++..+...+. ...|.|+.|+|++|+ + .+.++..+..
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~-l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR-LGEKDEGIDEIAS 322 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc-ccccchhHHHHHH
Confidence 5555555555444433321 123455555555432 3322222221 124566666666666 5 5555555554
Q ss_pred cC
Q 041246 586 NC 587 (637)
Q Consensus 586 ~c 587 (637)
..
T Consensus 323 ~~ 324 (382)
T KOG1909|consen 323 KF 324 (382)
T ss_pred hc
Confidence 43
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.11 E-value=6.5e-11 Score=145.08 Aligned_cols=280 Identities=15% Similarity=0.192 Sum_probs=144.4
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
.++.+|++.++. +.. +..-...+ ++|+.|+|+++.....-. .+..+++|+.|+|++|..+..- ..
T Consensus 611 ~~L~~L~L~~s~-l~~--L~~~~~~l--~~Lk~L~Ls~~~~l~~ip--------~ls~l~~Le~L~L~~c~~L~~l--p~ 675 (1153)
T PLN03210 611 ENLVKLQMQGSK-LEK--LWDGVHSL--TGLRNIDLRGSKNLKEIP--------DLSMATNLETLKLSDCSSLVEL--PS 675 (1153)
T ss_pred cCCcEEECcCcc-ccc--cccccccC--CCCCEEECCCCCCcCcCC--------ccccCCcccEEEecCCCCcccc--ch
Confidence 456677777642 221 11111222 677777777654311100 1235677777777776544321 11
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcH-----------------HHHHhcCCCCcE
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSM-----------------LPALRKLNCLEV 435 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l-----------------~~~l~~l~~L~~ 435 (637)
-...+++|+.|++++|..+..-... + .+ ++|+.|++++|..+....- .+....+++|+.
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~-i--~l-~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~ 751 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTG-I--NL-KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDE 751 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCc-C--CC-CCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccccccccccc
Confidence 2244566777777776544321110 0 12 2566666666643321100 000012334444
Q ss_pred EeccCCcCC--CH--HHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCC
Q 041246 436 LSVAGIETV--DD--YFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRS 511 (637)
Q Consensus 436 L~Ls~~~~l--~~--~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~ 511 (637)
|.+.++... .. ..+..+....+++|+.|+|++|..+... ..-...+++|+.|+|++|..+...+ .. ..+++
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls~C~~L~~LP--~~-~~L~s 826 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIENCINLETLP--TG-INLES 826 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCcccc--ChhhhCCCCCCEEECCCCCCcCeeC--CC-CCccc
Confidence 444332100 00 0000111122467888888887644321 2223457889999998887655321 11 14678
Q ss_pred CCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcC
Q 041246 512 ICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLR 591 (637)
Q Consensus 512 L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~ 591 (637)
|+.|+|++|..-.. +.. ...+|+.|+|+++ .++. +..-...+++|+.|+|++|.+++.... ....+++|+
T Consensus 827 L~~L~Ls~c~~L~~-~p~----~~~nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~ 896 (1153)
T PLN03210 827 LESLDLSGCSRLRT-FPD----ISTNISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLE 896 (1153)
T ss_pred cCEEECCCCCcccc-ccc----cccccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCC
Confidence 88888887642110 111 1257888888874 3332 222345678888888888887765322 234677888
Q ss_pred EEEeecCCCCChhhh
Q 041246 592 LLKLFGCSQITNVFL 606 (637)
Q Consensus 592 ~L~L~~C~~ltd~~l 606 (637)
.|++.+|..++...+
T Consensus 897 ~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 897 TVDFSDCGALTEASW 911 (1153)
T ss_pred eeecCCCcccccccC
Confidence 888888887775544
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=1.1e-09 Score=112.04 Aligned_cols=255 Identities=21% Similarity=0.185 Sum_probs=150.1
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCC--CCHHHHHHH------HHhCCCCCEEEecCCCCCC
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQ--LTDFGLSKL------ARSASALQSVNLSQCSLLT 392 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~--isd~~l~~L------~~~~~~L~~L~Ls~c~~ls 392 (637)
..++.|+|++.. +.-.....+.. .+.+.++|+..++++.+. +.+.....+ ...||.|++|+||.+ .+.
T Consensus 30 ~s~~~l~lsgnt--~G~EAa~~i~~-~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G 105 (382)
T KOG1909|consen 30 DSLTKLDLSGNT--FGTEAARAIAK-VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFG 105 (382)
T ss_pred CceEEEeccCCc--hhHHHHHHHHH-HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-ccC
Confidence 567777777655 44333333322 333555677766665421 222211111 234566777777664 444
Q ss_pred hhHHHH---HHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCC
Q 041246 393 NEGINL---LVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCG 469 (637)
Q Consensus 393 ~~~l~~---L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~ 469 (637)
..++.. +..+|. .|++|+|.+| .+...+-...-..+ .+| .....+ ...+.|+.+...++
T Consensus 106 ~~g~~~l~~ll~s~~-~L~eL~L~N~-Glg~~ag~~l~~al---~~l-----------~~~kk~-~~~~~Lrv~i~~rN- 167 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCT-DLEELYLNNC-GLGPEAGGRLGRAL---FEL-----------AVNKKA-ASKPKLRVFICGRN- 167 (382)
T ss_pred ccchHHHHHHHHhcc-CHHHHhhhcC-CCChhHHHHHHHHH---HHH-----------HHHhcc-CCCcceEEEEeecc-
Confidence 443333 222332 4555555554 22211100000000 000 011111 23589999998875
Q ss_pred CCCHHHH---HHHHhcCCCCCEEEEcCCCCCCHHHHHHH---HhcCCCCCEEEeccCCCCHHHHHHHHHh--cCCCccEE
Q 041246 470 QLTDRAL---KFVGKKCSRLCALDLSHLDNLTDATVQYL---ADGCRSICSLKLCRNNFSDEALAAFLEV--SGDSLTEL 541 (637)
Q Consensus 470 ~ltd~~l---~~l~~~c~~L~~L~L~~c~~itd~~l~~L---~~~~~~L~~L~Ls~~~ltd~~l~~l~~~--~~~~L~~L 541 (637)
.+.+.+. ....+.++.|+.+.+.. +.|...+...+ +.+|++|+.|||..|.++..+-..+... ..++|+.|
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 4555544 34446689999999998 57776665333 3689999999999999998775554332 23689999
Q ss_pred EcCCCCCCCHHH----HHHHHhCCCCcceEeeecCCCCCHHHHHHHH---hcCCCcCEEEeecCCC
Q 041246 542 SLNHVRGVGLNT----ALSLAKCSRNLLSLDLSWCRFIKDEALGFIV---DNCSLLRLLKLFGCSQ 600 (637)
Q Consensus 542 ~Ls~c~~l~~~~----l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~---~~cp~L~~L~L~~C~~ 600 (637)
++++|-. ...+ +.++....|+|+.|.|.+|. |+..+...++ ...|.|..|+|.+|..
T Consensus 247 ~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccc-ccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9999853 3333 33344568999999999998 8877765554 3368999999999964
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.91 E-value=4e-11 Score=129.62 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=56.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCH--HHHHHHHHhc
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSD--EALAAFLEVS 534 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd--~~l~~l~~~~ 534 (637)
+.+|+.++++. ++++.. ...+. .+++|..|+|++ +.|+..... .....+|++|+|+.|+++- .++..+
T Consensus 221 l~NL~dvDlS~-N~Lp~v-Pecly-~l~~LrrLNLS~-N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~avcKL---- 290 (1255)
T KOG0444|consen 221 LHNLRDVDLSE-NNLPIV-PECLY-KLRNLRRLNLSG-NKITELNMT--EGEWENLETLNLSRNQLTVLPDAVCKL---- 290 (1255)
T ss_pred hhhhhhccccc-cCCCcc-hHHHh-hhhhhheeccCc-Cceeeeecc--HHHHhhhhhhccccchhccchHHHhhh----
Confidence 35566666663 333321 11111 245566666666 455532211 0123456666666665442 122111
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCC
Q 041246 535 GDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQIT 602 (637)
Q Consensus 535 ~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~lt 602 (637)
++|+.|.+.+ ..++.+++.+-+.++.+|+.++..+|. +. ...+.+ ..|++|+.|.|..+..||
T Consensus 291 -~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LE-lVPEgl-cRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 291 -TKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LE-LVPEGL-CRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred -HHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cc-cCchhh-hhhHHHHHhcccccceee
Confidence 4555555544 234444444434444455555554443 11 111122 235555555555444443
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.3e-10 Score=119.90 Aligned_cols=165 Identities=22% Similarity=0.223 Sum_probs=76.7
Q ss_pred CCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCC--ChhHHHHHHHhhcccceEEeccCCCccchhcHHHHH
Q 041246 350 SLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLL--TNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPAL 427 (637)
Q Consensus 350 ~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~l--s~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l 427 (637)
.|++++.|+|+.+-.-.-..+..++..+|+|+.|+|+.+... ++..... .. +.|+.|.|+.| .++...+...+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l-~~lK~L~l~~C-Gls~k~V~~~~ 218 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LL-SHLKQLVLNSC-GLSWKDVQWIL 218 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hh-hhhheEEeccC-CCCHHHHHHHH
Confidence 556666666655433233444455555566666666554211 1111111 11 14556666666 44444455555
Q ss_pred hcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHH-----
Q 041246 428 RKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATV----- 502 (637)
Q Consensus 428 ~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l----- 502 (637)
..+|+|+.|+|.+...+....... .....|+.|+|+++..++...+..++. +|.|..|+++.| .+++..+
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~~~~~~~~-l~~L~~Lnls~t-gi~si~~~d~~s 293 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFDQGYKVGT-LPGLNQLNLSST-GIASIAEPDVES 293 (505)
T ss_pred HhCCcHHHhhhhcccccceecchh---hhhhHHhhccccCCccccccccccccc-ccchhhhhcccc-CcchhcCCCccc
Confidence 566666666665532211111110 123456666666554444333333332 556666666553 3433221
Q ss_pred HHHHhcCCCCCEEEeccCCCCH
Q 041246 503 QYLADGCRSICSLKLCRNNFSD 524 (637)
Q Consensus 503 ~~L~~~~~~L~~L~Ls~~~ltd 524 (637)
......+++|++|++..|++.+
T Consensus 294 ~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhhhcccccceeeecccCcccc
Confidence 1122345566666666666544
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.5e-09 Score=113.83 Aligned_cols=215 Identities=17% Similarity=0.160 Sum_probs=121.8
Q ss_pred ccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHH
Q 041246 348 NFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPAL 427 (637)
Q Consensus 348 ~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l 427 (637)
.+++..|+.+.|.++ .+.+.+.....+.|++++.|+|+.+-.-.-..+..+++.+| +|+.|+|+.+.-....
T Consensus 117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~------ 188 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSNFI------ 188 (505)
T ss_pred hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccCCc------
Confidence 347888999999886 56777766777889999999999863233355666666666 6777777665211100
Q ss_pred hcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHh
Q 041246 428 RKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLAD 507 (637)
Q Consensus 428 ~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~ 507 (637)
..... ...+.|+.|.|+.| +++...+..+...||+|+.|.+.+++.+...... ..
T Consensus 189 --------------~s~~~--------~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~ 243 (505)
T KOG3207|consen 189 --------------SSNTT--------LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TK 243 (505)
T ss_pred --------------cccch--------hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hh
Confidence 00000 01356666666666 4666666666666666666666664322211111 01
Q ss_pred cCCCCCEEEeccCCCCHHH-HHHHHHhcCCCccEEEcCCCCCCCHHH-----HHHHHhCCCCcceEeeecCCCCCHHHHH
Q 041246 508 GCRSICSLKLCRNNFSDEA-LAAFLEVSGDSLTELSLNHVRGVGLNT-----ALSLAKCSRNLLSLDLSWCRFIKDEALG 581 (637)
Q Consensus 508 ~~~~L~~L~Ls~~~ltd~~-l~~l~~~~~~~L~~L~Ls~c~~l~~~~-----l~~l~~~~~~L~~L~Ls~c~~ltd~~l~ 581 (637)
....|+.|+|++|++-+.. +.... ..+.|..|+++.|. +++.. .......+++|++|+++.|.-.....+.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~--~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVG--TLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred hhhHHhhccccCCcccccccccccc--cccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccc
Confidence 2345666666666544322 11111 12555555555432 22111 1112346788999999888732344455
Q ss_pred HHHhcCCCcCEEEeecCC
Q 041246 582 FIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 582 ~l~~~cp~L~~L~L~~C~ 599 (637)
.+. ..++|++|.+.+..
T Consensus 321 ~l~-~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 321 HLR-TLENLKHLRITLNY 337 (505)
T ss_pred hhh-ccchhhhhhccccc
Confidence 543 57788888876543
No 20
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.69 E-value=2.2e-07 Score=107.12 Aligned_cols=263 Identities=19% Similarity=0.214 Sum_probs=159.9
Q ss_pred CCcHHHHHHHHHHHccccccCC---CCCCHHHHHHHHHHHhhC-CCCCHHHHHHhhC-CCCcEEEEcCCCCCCHHHHHHH
Q 041246 240 VPSLMDLSLKILARNAEAIVSL---ELVPDFLRHKLSQIVRKK-RKMNARFLELLAS-GSPTEIRLNDCSEINTDDFTRI 314 (637)
Q Consensus 240 ~psL~dLcL~~l~~~i~~l~~L---~~Lp~~l~~~l~~~ls~~-~~l~~~~l~ll~~-~~l~~L~Ls~c~~l~~~~l~~l 314 (637)
+++|.++..++++.++..=... ..+++..-.++...+... ...+......+.. -.++.+++.+. .+....+..+
T Consensus 2 ~~sl~~~a~~~ia~~i~ng~y~~~~~~ld~~sSn~i~~~ll~~~~~~~~~~~~~~~~~f~ltki~l~~~-~~~~~~~~~l 80 (699)
T KOG3665|consen 2 VSSLADIACQKIAEYIQNGSYNNLQYELDPKSSNKIYSELLLKKFELTPEFLERIIRKFNLTKIDLKNV-TLQHQTLEML 80 (699)
T ss_pred CCchhhhhHHHHHHHHhcCCccccceecChhhhHHHHHHHHhccCCCchhHHHhhhhhheeEEeeccce-ecchhHHHHH
Confidence 4567777777777765532222 235555555555443332 2222333332222 24666776663 3444444444
Q ss_pred HhhCCCCCeeEEEeecCCCCCChHH------HHHHHHHhc--cCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEec
Q 041246 315 FGACDKKNLIVLQLDLCGRILTENV------IINTIVTQN--FSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLS 386 (637)
Q Consensus 315 ~~~c~~~nL~~L~Ls~~~~~l~d~~------l~~il~~~~--~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls 386 (637)
.+ ..|++|.|.+....-.+.. +..++...+ ..-.+|++|+++|...++......+...+|+|++|.++
T Consensus 81 ~~----~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~ 156 (699)
T KOG3665|consen 81 RK----QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVIS 156 (699)
T ss_pred hh----ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEec
Confidence 33 3488888776442111100 112222222 23467999999997667666677888889999999999
Q ss_pred CCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEec
Q 041246 387 QCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLA 466 (637)
Q Consensus 387 ~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls 466 (637)
+ ..+....+..++.++| +|..|+|+++ +++. ...+.++++|+.|.+.+....+...+..++ .+.+|+.||++
T Consensus 157 ~-~~~~~~dF~~lc~sFp-NL~sLDIS~T-nI~n---l~GIS~LknLq~L~mrnLe~e~~~~l~~LF--~L~~L~vLDIS 228 (699)
T KOG3665|consen 157 G-RQFDNDDFSQLCASFP-NLRSLDISGT-NISN---LSGISRLKNLQVLSMRNLEFESYQDLIDLF--NLKKLRVLDIS 228 (699)
T ss_pred C-ceecchhHHHHhhccC-ccceeecCCC-CccC---cHHHhccccHHHHhccCCCCCchhhHHHHh--cccCCCeeecc
Confidence 8 5666666888888887 9999999987 5554 256678888888888886555545566654 37889999998
Q ss_pred CCCCCCHHH-HH---HHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEE
Q 041246 467 NCGQLTDRA-LK---FVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLK 516 (637)
Q Consensus 467 ~c~~ltd~~-l~---~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~ 516 (637)
.-....+.. +. .....+|+|+.|+.++ ..++...+..+...-|+|+.+.
T Consensus 229 ~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 229 RDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCccHhhhh
Confidence 754333321 11 1113467888888887 5777777776666555555544
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.54 E-value=5e-09 Score=113.72 Aligned_cols=230 Identities=19% Similarity=0.146 Sum_probs=114.8
Q ss_pred CCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHc
Q 041246 377 ASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAH 456 (637)
Q Consensus 377 ~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~ 456 (637)
+..|..|+|+.+ .+.+.. ..+-. - .++..|+|+++ +|.... -+.+.++..|-.|+|++.. + +.+..-+. .
T Consensus 102 l~dLt~lDLShN-qL~EvP-~~LE~-A-Kn~iVLNLS~N-~IetIP-n~lfinLtDLLfLDLS~Nr-L--e~LPPQ~R-R 171 (1255)
T KOG0444|consen 102 LKDLTILDLSHN-QLREVP-TNLEY-A-KNSIVLNLSYN-NIETIP-NSLFINLTDLLFLDLSNNR-L--EMLPPQIR-R 171 (1255)
T ss_pred cccceeeecchh-hhhhcc-hhhhh-h-cCcEEEEcccC-ccccCC-chHHHhhHhHhhhccccch-h--hhcCHHHH-H
Confidence 455666666664 333211 11111 1 26777777776 333221 2344567777777777632 1 11111122 2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC--HHHHHHHHHhc
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS--DEALAAFLEVS 534 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt--d~~l~~l~~~~ 534 (637)
+..|++|.|++++ +....+..+.. +.+|+.|.+++. .-|-..+..-...+.+|..+||++|.++ .+.+..+
T Consensus 172 L~~LqtL~Ls~NP-L~hfQLrQLPs-mtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l---- 244 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNP-LNHFQLRQLPS-MTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL---- 244 (1255)
T ss_pred HhhhhhhhcCCCh-hhHHHHhcCcc-chhhhhhhcccc-cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhh----
Confidence 5678888888754 44444444332 445666666663 3333223222344567777888877654 3344433
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcc-----
Q 041246 535 GDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGH----- 609 (637)
Q Consensus 535 ~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~l----- 609 (637)
++|+.|+|++.. |+...+ -.....+|++|+||.|. ++.. ..-+..+++|++|.+.++ +++-.+++..
T Consensus 245 -~~LrrLNLS~N~-iteL~~--~~~~W~~lEtLNlSrNQ-Lt~L--P~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 245 -RNLRRLNLSGNK-ITELNM--TEGEWENLETLNLSRNQ-LTVL--PDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLI 316 (1255)
T ss_pred -hhhheeccCcCc-eeeeec--cHHHHhhhhhhccccch-hccc--hHHHhhhHHHHHHHhccC-cccccCCccchhhhh
Confidence 577777777642 322111 11234567777777765 3311 111123556666666543 4444443310
Q ss_pred -------cccc--eeeecCCCCCCCCeeecc
Q 041246 610 -------SNSM--VQIIGLPLTPALKHIQVL 631 (637)
Q Consensus 610 -------s~~~--l~i~g~~~lp~L~~L~l~ 631 (637)
++.. +.-.|+-.|++|+.|.+.
T Consensus 317 ~Levf~aanN~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 317 QLEVFHAANNKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhHHHHhhccccccCchhhhhhHHHHHhccc
Confidence 1122 223455567788777664
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.39 E-value=1.3e-06 Score=100.93 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=34.8
Q ss_pred hCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCC
Q 041246 559 KCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQIT 602 (637)
Q Consensus 559 ~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~lt 602 (637)
..+|+|+.||.|+.. ++...++.+...-|+|+.+.+.+|....
T Consensus 247 ~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~~i~~~~~~~~~ 289 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTD-INEEILEELLNSHPNLQQIAALDCLALS 289 (699)
T ss_pred ccCccccEEecCCcc-hhHHHHHHHHHhCccHhhhhhhhhhccc
Confidence 357899999999877 8888899888888999988888765443
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.26 E-value=4.1e-07 Score=103.50 Aligned_cols=225 Identities=18% Similarity=0.225 Sum_probs=120.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcC
Q 041246 351 LPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKL 430 (637)
Q Consensus 351 l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l 430 (637)
-.+|++++++.+.. +. +......|.+|+.|++..+ .++.-... +... .+|+.|.+..|. +.. +...+..+
T Consensus 240 p~nl~~~dis~n~l-~~--lp~wi~~~~nle~l~~n~N-~l~~lp~r-i~~~--~~L~~l~~~~ne-l~y--ip~~le~~ 309 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNL-SN--LPEWIGACANLEALNANHN-RLVALPLR-ISRI--TSLVSLSAAYNE-LEY--IPPFLEGL 309 (1081)
T ss_pred cccceeeecchhhh-hc--chHHHHhcccceEecccch-hHHhhHHH-Hhhh--hhHHHHHhhhhh-hhh--CCCccccc
Confidence 35677888777532 22 2244466888888888875 44322221 2111 256666666552 221 23344567
Q ss_pred CCCcEEeccCCc--CCCHHHHHHH------HH--------------HcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCE
Q 041246 431 NCLEVLSVAGIE--TVDDYFVTEI------VR--------------AHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCA 488 (637)
Q Consensus 431 ~~L~~L~Ls~~~--~l~~~~l~~l------l~--------------~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~ 488 (637)
+.|++|+|.... .+.+..+... +. ...+.|+.|.+.++ .++|..+..+.. .++|+.
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~~-~~hLKV 387 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPVLVN-FKHLKV 387 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhhhcc-ccceee
Confidence 778888886531 1222111111 00 11234555555553 566666655543 566777
Q ss_pred EEEcCC--CCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcce
Q 041246 489 LDLSHL--DNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLS 566 (637)
Q Consensus 489 L~L~~c--~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~ 566 (637)
|+|+++ +.+.+..+ .++..|+.|+|++|+++.-.... + .++.|+.|...+..-.. +..+ ..++.|+.
T Consensus 388 LhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~Lp~tv-a--~~~~L~tL~ahsN~l~~---fPe~-~~l~qL~~ 456 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTTLPDTV-A--NLGRLHTLRAHSNQLLS---FPEL-AQLPQLKV 456 (1081)
T ss_pred eeecccccccCCHHHH----hchHHhHHHhcccchhhhhhHHH-H--hhhhhHHHhhcCCceee---chhh-hhcCcceE
Confidence 777773 12223222 33456777777777665433111 1 22455555555433221 1122 24688888
Q ss_pred EeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCC
Q 041246 567 LDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQ 600 (637)
Q Consensus 567 L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ 600 (637)
+|||.|. ++...+...... |+|++|+++|++.
T Consensus 457 lDlS~N~-L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 LDLSCNN-LSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred Eecccch-hhhhhhhhhCCC-cccceeeccCCcc
Confidence 9988665 777766655432 7899999988874
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.25 E-value=8.8e-07 Score=102.80 Aligned_cols=241 Identities=19% Similarity=0.149 Sum_probs=132.9
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHH
Q 041246 294 SPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKL 373 (637)
Q Consensus 294 ~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L 373 (637)
.++.|.+.++ .++. +-... ++|++|+|+++. ++. + ....++|+.|+|+++. ++. +
T Consensus 223 ~L~~L~L~~N-~Lt~-----LP~lp--~~Lk~LdLs~N~--Lts--L-------P~lp~sL~~L~Ls~N~-L~~-----L 277 (788)
T PRK15387 223 HITTLVIPDN-NLTS-----LPALP--PELRTLEVSGNQ--LTS--L-------PVLPPGLLELSIFSNP-LTH-----L 277 (788)
T ss_pred CCCEEEccCC-cCCC-----CCCCC--CCCcEEEecCCc--cCc--c-------cCcccccceeeccCCc-hhh-----h
Confidence 5667776663 2332 11112 677777777654 221 1 0123567777777652 321 1
Q ss_pred HHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHH
Q 041246 374 ARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIV 453 (637)
Q Consensus 374 ~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll 453 (637)
....++|+.|+|++| .++. +.. .+++|+.|++++| .+.... . -..+|+.|+++++. +.. +..
T Consensus 278 p~lp~~L~~L~Ls~N-~Lt~-----LP~-~p~~L~~LdLS~N-~L~~Lp--~---lp~~L~~L~Ls~N~-L~~--LP~-- 339 (788)
T PRK15387 278 PALPSGLCKLWIFGN-QLTS-----LPV-LPPGLQELSVSDN-QLASLP--A---LPSELCKLWAYNNQ-LTS--LPT-- 339 (788)
T ss_pred hhchhhcCEEECcCC-cccc-----ccc-cccccceeECCCC-ccccCC--C---CcccccccccccCc-ccc--ccc--
Confidence 122356777777775 3332 111 1236788888776 333211 1 12356667766642 221 111
Q ss_pred HHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHh
Q 041246 454 RAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEV 533 (637)
Q Consensus 454 ~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~ 533 (637)
...+|+.|+|+++ .++. +....++|+.|++++ +.++. +. ....+|+.|+|++|.++. +..
T Consensus 340 --lp~~Lq~LdLS~N-~Ls~-----LP~lp~~L~~L~Ls~-N~L~~--LP---~l~~~L~~LdLs~N~Lt~--LP~---- 399 (788)
T PRK15387 340 --LPSGLQELSVSDN-QLAS-----LPTLPSELYKLWAYN-NRLTS--LP---ALPSGLKELIVSGNRLTS--LPV---- 399 (788)
T ss_pred --cccccceEecCCC-ccCC-----CCCCCcccceehhhc-ccccc--Cc---ccccccceEEecCCcccC--CCC----
Confidence 1247888888875 4542 112245677888877 45553 22 224578999999988763 221
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhh
Q 041246 534 SGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLN 607 (637)
Q Consensus 534 ~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~ 607 (637)
..++|+.|+++++. ++. +.. ...+|+.|++++|. ++. +..-+..+++|+.|+|.+++ ++...+.
T Consensus 400 l~s~L~~LdLS~N~-Lss--IP~---l~~~L~~L~Ls~Nq-Lt~--LP~sl~~L~~L~~LdLs~N~-Ls~~~~~ 463 (788)
T PRK15387 400 LPSELKELMVSGNR-LTS--LPM---LPSGLLSLSVYRNQ-LTR--LPESLIHLSSETTVNLEGNP-LSERTLQ 463 (788)
T ss_pred cccCCCEEEccCCc-CCC--CCc---chhhhhhhhhccCc-ccc--cChHHhhccCCCeEECCCCC-CCchHHH
Confidence 12589999999864 331 111 13478889998887 663 22223468899999999984 5554433
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.12 E-value=2.3e-06 Score=99.47 Aligned_cols=224 Identities=18% Similarity=0.124 Sum_probs=141.1
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
+.+++|+++++ .++. +.. .. ++|+.|+|+++. ++ .+. ....+|+.|+|+++ .++.
T Consensus 242 ~~Lk~LdLs~N-~Lts--LP~---lp--~sL~~L~Ls~N~--L~-----~Lp----~lp~~L~~L~Ls~N-~Lt~----- 296 (788)
T PRK15387 242 PELRTLEVSGN-QLTS--LPV---LP--PGLLELSIFSNP--LT-----HLP----ALPSGLCKLWIFGN-QLTS----- 296 (788)
T ss_pred CCCcEEEecCC-ccCc--ccC---cc--cccceeeccCCc--hh-----hhh----hchhhcCEEECcCC-cccc-----
Confidence 67899999886 4543 111 12 789999998765 22 111 12357889999886 3432
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEI 452 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l 452 (637)
+....++|+.|++++| .++. + .. .+.+|+.|++++| .++.. .. ...+|+.|+++++ .+..-+
T Consensus 297 LP~~p~~L~~LdLS~N-~L~~--L---p~-lp~~L~~L~Ls~N-~L~~L--P~---lp~~Lq~LdLS~N-~Ls~LP---- 358 (788)
T PRK15387 297 LPVLPPGLQELSVSDN-QLAS--L---PA-LPSELCKLWAYNN-QLTSL--PT---LPSGLQELSVSDN-QLASLP---- 358 (788)
T ss_pred ccccccccceeECCCC-cccc--C---CC-CcccccccccccC-ccccc--cc---cccccceEecCCC-ccCCCC----
Confidence 1123478999999997 4442 1 11 2347899999887 33321 11 1247999999984 333211
Q ss_pred HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHH
Q 041246 453 VRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLE 532 (637)
Q Consensus 453 l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~ 532 (637)
...++|+.|+++++ .++. +. ...++|+.|+++++ .++.. . ...++|+.|++++|.++. +..+
T Consensus 359 --~lp~~L~~L~Ls~N-~L~~--LP---~l~~~L~~LdLs~N-~Lt~L--P---~l~s~L~~LdLS~N~Lss--IP~l-- 420 (788)
T PRK15387 359 --TLPSELYKLWAYNN-RLTS--LP---ALPSGLKELIVSGN-RLTSL--P---VLPSELKELMVSGNRLTS--LPML-- 420 (788)
T ss_pred --CCCcccceehhhcc-cccc--Cc---ccccccceEEecCC-cccCC--C---CcccCCCEEEccCCcCCC--CCcc--
Confidence 12467888988875 4542 22 23457999999984 66531 1 124689999999998864 2222
Q ss_pred hcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHH
Q 041246 533 VSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFI 583 (637)
Q Consensus 533 ~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l 583 (637)
..+|+.|+|+++. ++. +..-...+++|+.|+|++|+ ++...+..+
T Consensus 421 --~~~L~~L~Ls~Nq-Lt~--LP~sl~~L~~L~~LdLs~N~-Ls~~~~~~L 465 (788)
T PRK15387 421 --PSGLLSLSVYRNQ-LTR--LPESLIHLSSETTVNLEGNP-LSERTLQAL 465 (788)
T ss_pred --hhhhhhhhhccCc-ccc--cChHHhhccCCCeEECCCCC-CCchHHHHH
Confidence 2468888888743 332 22223467899999999998 887766555
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.05 E-value=2.3e-06 Score=97.62 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=79.6
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC---HHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCC
Q 041246 485 RLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS---DEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCS 561 (637)
Q Consensus 485 ~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt---d~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~ 561 (637)
.|+.|.+.+ +.++|..+..+ .++++|+.|+|++|.++ +..+..+ ..|++|+|+|.. ++. +..-...|
T Consensus 360 ~Lq~Lylan-N~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kl-----e~LeeL~LSGNk-L~~--Lp~tva~~ 429 (1081)
T KOG0618|consen 360 ALQELYLAN-NHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLRKL-----EELEELNLSGNK-LTT--LPDTVANL 429 (1081)
T ss_pred HHHHHHHhc-Ccccccchhhh-ccccceeeeeecccccccCCHHHHhch-----HHhHHHhcccch-hhh--hhHHHHhh
Confidence 355566666 56777666655 46788888888888544 4444333 578888888754 221 22223357
Q ss_pred CCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccCCC
Q 041246 562 RNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLEPQ 634 (637)
Q Consensus 562 ~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~~~ 634 (637)
+.|++|...+|. +.... .++ ..+.|+.++++ |.+++...+..+ .+. |+|++|+++|-.
T Consensus 430 ~~L~tL~ahsN~-l~~fP--e~~-~l~qL~~lDlS-~N~L~~~~l~~~---------~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQ-LLSFP--ELA-QLPQLKVLDLS-CNNLSEVTLPEA---------LPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCCc-eeech--hhh-hcCcceEEecc-cchhhhhhhhhh---------CCC-cccceeeccCCc
Confidence 788888876665 43333 333 57899999995 668877766642 122 789999988743
No 27
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=0.00022 Score=71.47 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCCCcEEEEcCCCCCCHHHH---HHHHhhCCCCCeeEEEeecCCC-CCChHHHHH--HHHHhccCCCCccEEEecCCCCC
Q 041246 292 SGSPTEIRLNDCSEINTDDF---TRIFGACDKKNLIVLQLDLCGR-ILTENVIIN--TIVTQNFSLPALTTISLTGAYQL 365 (637)
Q Consensus 292 ~~~l~~L~Ls~c~~l~~~~l---~~l~~~c~~~nL~~L~Ls~~~~-~l~d~~l~~--il~~~~~~l~~L~~L~Ls~~~~i 365 (637)
...+.+++|++.+ +..+.. ...+... ++|+..+++.... ...|..... ++...+.+||+|+.++|+.+.+-
T Consensus 29 ~d~~~evdLSGNt-igtEA~e~l~~~ia~~--~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 29 MDELVEVDLSGNT-IGTEAMEELCNVIANV--RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hcceeEEeccCCc-ccHHHHHHHHHHHhhh--cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4567788888854 444333 3333332 6777777765321 122322221 12224457788888888775321
Q ss_pred --CHHHHHHHHHhCCCCCEEEecCC
Q 041246 366 --TDFGLSKLARSASALQSVNLSQC 388 (637)
Q Consensus 366 --sd~~l~~L~~~~~~L~~L~Ls~c 388 (637)
....+..+....++|.+|.+++|
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC
Confidence 12334445556677777777776
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.94 E-value=5.4e-06 Score=79.59 Aligned_cols=108 Identities=24% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCCCccEEEecCCCCCCH-HHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHh
Q 041246 350 SLPALTTISLTGAYQLTD-FGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALR 428 (637)
Q Consensus 350 ~l~~L~~L~Ls~~~~isd-~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~ 428 (637)
.+.+|+.|+|+++. |+. .++ ..++.|++|+++++ .++.-+ ..+...+| +|++|+++++ .+.+..-...+.
T Consensus 40 ~l~~L~~L~Ls~N~-I~~l~~l----~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp-~L~~L~L~~N-~I~~l~~l~~L~ 110 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQ-ITKLEGL----PGLPRLKTLDLSNN-RISSIS-EGLDKNLP-NLQELYLSNN-KISDLNELEPLS 110 (175)
T ss_dssp T-TT--EEE-TTS---S--TT--------TT--EEE--SS----S-C-HHHHHH-T-T--EEE-TTS----SCCCCGGGG
T ss_pred hhcCCCEEECCCCC-CccccCc----cChhhhhhcccCCC-CCCccc-cchHHhCC-cCCEEECcCC-cCCChHHhHHHH
Confidence 45666666666653 221 122 23466666666664 443321 11222344 6666666665 333222233445
Q ss_pred cCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEec
Q 041246 429 KLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLA 466 (637)
Q Consensus 429 ~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls 466 (637)
.+++|++|++.+.+-........++-..+|+|+.||-.
T Consensus 111 ~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 56666666665543222222222232335555555443
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.90 E-value=0.00028 Score=70.82 Aligned_cols=245 Identities=18% Similarity=0.124 Sum_probs=125.7
Q ss_pred CCCCccEEEecCCCCCCHHHHHHHHH---hCCCCCEEEecCC--CCCChhH---HHHHH---HhhcccceEEeccCCCcc
Q 041246 350 SLPALTTISLTGAYQLTDFGLSKLAR---SASALQSVNLSQC--SLLTNEG---INLLV---KHLKSTLRVLYIDHCQNI 418 (637)
Q Consensus 350 ~l~~L~~L~Ls~~~~isd~~l~~L~~---~~~~L~~L~Ls~c--~~ls~~~---l~~L~---~~~~~~L~~L~Ls~c~~i 418 (637)
.+..+..++|+|++ |.......+.. ...+|+..+++.- ....+.- +..+. -.|| +|+..+|+.+-.-
T Consensus 28 ~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp-~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCP-RLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCC-cceeeeccccccC
Confidence 47888999999964 55555555543 3456666666642 1122221 11111 1255 7777777765211
Q ss_pred --chhcHHHHHhcCCCCcEEeccCCcC--CCHHHH----HHHH----HHcCCCccEEEecCCCCCCHH---HHHHHHhcC
Q 041246 419 --DAVSMLPALRKLNCLEVLSVAGIET--VDDYFV----TEIV----RAHCLNMRQLVLANCGQLTDR---ALKFVGKKC 483 (637)
Q Consensus 419 --~~~~l~~~l~~l~~L~~L~Ls~~~~--l~~~~l----~~ll----~~~~~~L~~L~Ls~c~~ltd~---~l~~l~~~c 483 (637)
....+...+.+...|+||.++++.. +...-+ ..+. ....|.|+.....++. +... -+....+.-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhh
Confidence 1122344566777777777776521 111111 1111 0134677777666542 2221 122222222
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHH----hcCCCCCEEEeccCCCCHHHHHHHHHhc--CCCccEEEcCCCCCCCHHHHHHH
Q 041246 484 SRLCALDLSHLDNLTDATVQYLA----DGCRSICSLKLCRNNFSDEALAAFLEVS--GDSLTELSLNHVRGVGLNTALSL 557 (637)
Q Consensus 484 ~~L~~L~L~~c~~itd~~l~~L~----~~~~~L~~L~Ls~~~ltd~~l~~l~~~~--~~~L~~L~Ls~c~~l~~~~l~~l 557 (637)
.+|+.+.+.. +.|...++..++ ..+.+|+.|||..|.++-.|-..+.... .+.|+.|.+..|-.- ..+..++
T Consensus 185 ~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls-~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS-NEGVKSV 262 (388)
T ss_pred cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc-cccHHHH
Confidence 4677777777 566666555443 3467777777777777765544433222 245677777776422 1222222
Q ss_pred H-----hCCCCcceEeeecCCC----CCHHHHHHHH-hcCCCcCEEEeecCC
Q 041246 558 A-----KCSRNLLSLDLSWCRF----IKDEALGFIV-DNCSLLRLLKLFGCS 599 (637)
Q Consensus 558 ~-----~~~~~L~~L~Ls~c~~----ltd~~l~~l~-~~cp~L~~L~L~~C~ 599 (637)
. ...|+|..|-+.++.. |-+..+..+. ...|-|..|.+.|++
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 1 1346777777766641 1122222222 456677777777653
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.86 E-value=1.9e-05 Score=92.06 Aligned_cols=100 Identities=14% Similarity=0.061 Sum_probs=43.2
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCC
Q 041246 484 SRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRN 563 (637)
Q Consensus 484 ~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~ 563 (637)
++|+.|++++| .++... ..+ +++|+.|+|++|+++.. .. ...++|+.|+|++|. ++.. ...+ .++
T Consensus 325 ~sL~~L~Ls~N-~Lt~LP-~~l---~~sL~~L~Ls~N~L~~L--P~---~lp~~L~~LdLs~N~-Lt~L-P~~l---~~s 389 (754)
T PRK15370 325 PGLKTLEAGEN-ALTSLP-ASL---PPELQVLDVSKNQITVL--PE---TLPPTITTLDVSRNA-LTNL-PENL---PAA 389 (754)
T ss_pred ccceeccccCC-ccccCC-hhh---cCcccEEECCCCCCCcC--Ch---hhcCCcCEEECCCCc-CCCC-CHhH---HHH
Confidence 45666666553 333211 011 24566666666655421 11 012456666666543 2110 0011 124
Q ss_pred cceEeeecCCCCCH--HHHHHHHhcCCCcCEEEeecCC
Q 041246 564 LLSLDLSWCRFIKD--EALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 564 L~~L~Ls~c~~ltd--~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
|+.|++++|. ++. ..+..+...++.+..|+|.+++
T Consensus 390 L~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 390 LQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 5556666554 331 1223333344566666666553
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.77 E-value=6.1e-05 Score=87.96 Aligned_cols=241 Identities=19% Similarity=0.177 Sum_probs=132.1
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHH
Q 041246 294 SPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKL 373 (637)
Q Consensus 294 ~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L 373 (637)
....|++++.. ++. +...+ .++|+.|+|+++. ++. +.. .-.++|++|+++++. ++.-. ..+
T Consensus 179 ~~~~L~L~~~~-Lts--LP~~I----p~~L~~L~Ls~N~--Lts--LP~------~l~~nL~~L~Ls~N~-LtsLP-~~l 239 (754)
T PRK15370 179 NKTELRLKILG-LTT--IPACI----PEQITTLILDNNE--LKS--LPE------NLQGNIKTLYANSNQ-LTSIP-ATL 239 (754)
T ss_pred CceEEEeCCCC-cCc--CCccc----ccCCcEEEecCCC--CCc--CCh------hhccCCCEEECCCCc-cccCC-hhh
Confidence 45678887642 332 11111 1678889888765 221 111 022578999998863 33211 011
Q ss_pred HHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcC--CCH---HH
Q 041246 374 ARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIET--VDD---YF 448 (637)
Q Consensus 374 ~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~--l~~---~~ 448 (637)
.++|+.|+|++|. ++. +....+++|+.|++++| .++. +... -.++|+.|+++++.. +.. ..
T Consensus 240 ---~~~L~~L~Ls~N~-L~~-----LP~~l~s~L~~L~Ls~N-~L~~--LP~~--l~~sL~~L~Ls~N~Lt~LP~~lp~s 305 (754)
T PRK15370 240 ---PDTIQEMELSINR-ITE-----LPERLPSALQSLDLFHN-KISC--LPEN--LPEELRYLSVYDNSIRTLPAHLPSG 305 (754)
T ss_pred ---hccccEEECcCCc-cCc-----CChhHhCCCCEEECcCC-ccCc--cccc--cCCCCcEEECCCCccccCcccchhh
Confidence 2578899999873 332 11122347999999876 4432 1111 124788888887521 111 01
Q ss_pred HHHHH----------HHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEec
Q 041246 449 VTEIV----------RAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLC 518 (637)
Q Consensus 449 l~~ll----------~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls 518 (637)
+..+- ....++|+.|++++|. ++. +.. ..+++|+.|++++| .++.... .+ .++|+.|+|+
T Consensus 306 L~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N-~L~~LP~-~l---p~~L~~LdLs 375 (754)
T PRK15370 306 ITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTS--LPA--SLPPELQVLDVSKN-QITVLPE-TL---PPTITTLDVS 375 (754)
T ss_pred HHHHHhcCCccccCCccccccceeccccCCc-ccc--CCh--hhcCcccEEECCCC-CCCcCCh-hh---cCCcCEEECC
Confidence 11110 0113567788877763 432 111 12468999999885 5553211 11 3679999999
Q ss_pred cCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCH-HHHHHHHhCCCCcceEeeecCCCCCHHHHHHH
Q 041246 519 RNNFSDEALAAFLEVSGDSLTELSLNHVRGVGL-NTALSLAKCSRNLLSLDLSWCRFIKDEALGFI 583 (637)
Q Consensus 519 ~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~-~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l 583 (637)
+|+++...- .+ ...|+.|+++++.-... ..+..+...++++..|+|.+|+ ++...+..+
T Consensus 376 ~N~Lt~LP~-~l----~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np-ls~~tl~~L 435 (754)
T PRK15370 376 RNALTNLPE-NL----PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP-FSERTIQNM 435 (754)
T ss_pred CCcCCCCCH-hH----HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC-ccHHHHHHH
Confidence 888763211 11 13677888887543211 1234444556888899998888 776655544
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=3e-05 Score=78.41 Aligned_cols=212 Identities=17% Similarity=0.150 Sum_probs=139.3
Q ss_pred hccCCCCccEEEecCCCCCCH-HHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHH
Q 041246 347 QNFSLPALTTISLTGAYQLTD-FGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLP 425 (637)
Q Consensus 347 ~~~~l~~L~~L~Ls~~~~isd-~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~ 425 (637)
+...+..++.|+|.++ .|++ ..+..+...+|.|+.|+|+.+ .++. .+..+.--. .+|+.|-|++. .+.......
T Consensus 66 ~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~-~nl~~lVLNgT-~L~w~~~~s 140 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPL-KNLRVLVLNGT-GLSWTQSTS 140 (418)
T ss_pred HHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccc-cceEEEEEcCC-CCChhhhhh
Confidence 4457888999999985 5655 566777888999999999875 4432 233332112 38999999886 555555667
Q ss_pred HHhcCCCCcEEeccCC----cCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHH
Q 041246 426 ALRKLNCLEVLSVAGI----ETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDAT 501 (637)
Q Consensus 426 ~l~~l~~L~~L~Ls~~----~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~ 501 (637)
.+..+|.++.|.++.. -.+.++.... .-+.+++|.+.+|..........+.+.+|++..+.++.|+ +.+..
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~----~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s 215 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDNCIED----WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTES 215 (418)
T ss_pred hhhcchhhhhhhhccchhhhhccccccccc----cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchh
Confidence 7788888888888764 1122222222 2467888888888755555666777889999999999974 33333
Q ss_pred HHHHHhcCCCCCEEEeccCCCCHH-HHHHHHHhcCCCccEEEcCCCCCCCHH----HHHHHHhCCCCcceEeee
Q 041246 502 VQYLADGCRSICSLKLCRNNFSDE-ALAAFLEVSGDSLTELSLNHVRGVGLN----TALSLAKCSRNLLSLDLS 570 (637)
Q Consensus 502 l~~L~~~~~~L~~L~Ls~~~ltd~-~l~~l~~~~~~~L~~L~Ls~c~~l~~~----~l~~l~~~~~~L~~L~Ls 570 (637)
-..-...+|.+..|+|+.+++.+. ++.++. ..+.|..|.+++..-.... -..-++..+++++.|+=+
T Consensus 216 ~ek~se~~p~~~~LnL~~~~idswasvD~Ln--~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 216 SEKGSEPFPSLSCLNLGANNIDSWASVDALN--GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hcccCCCCCcchhhhhcccccccHHHHHHHc--CCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 233335578888999999998765 344443 2378888888876533211 111134567777777654
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=1.1e-05 Score=81.55 Aligned_cols=212 Identities=17% Similarity=0.119 Sum_probs=123.7
Q ss_pred CcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHH
Q 041246 295 PTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLA 374 (637)
Q Consensus 295 l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~ 374 (637)
+.-+.+.+|.--+...+..+...| ..++.|+|.+.. ++|.. .+. .++.++|.|+.|+|+.+..-++ +..+-
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~--~~v~elDL~~N~--iSdWs--eI~-~ile~lP~l~~LNls~N~L~s~--I~~lp 117 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSV--TDVKELDLTGNL--ISDWS--EIG-AILEQLPALTTLNLSCNSLSSD--IKSLP 117 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHh--hhhhhhhcccch--hccHH--HHH-HHHhcCccceEeeccCCcCCCc--cccCc
Confidence 334566676544456667777777 788888887755 44422 111 1455888999999887643332 22221
Q ss_pred HhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCC----ccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHH
Q 041246 375 RSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQ----NIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVT 450 (637)
Q Consensus 375 ~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~----~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~ 450 (637)
.-..+|+.|-|.+ ..++-..+..+....| .++.|.++.+. ++.+.... ..-+.++.|.+..|....-....
T Consensus 118 ~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP-~vtelHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 118 LPLKNLRVLVLNG-TGLSWTQSTSSLDDLP-KVTELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred ccccceEEEEEcC-CCCChhhhhhhhhcch-hhhhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHH
Confidence 1236788888888 4666666666666565 67777776551 11111000 12234555555555322222222
Q ss_pred HHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCC-HHHHHHHHhcCCCCCEEEeccCCCCH
Q 041246 451 EIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLT-DATVQYLADGCRSICSLKLCRNNFSD 524 (637)
Q Consensus 451 ~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~it-d~~l~~L~~~~~~L~~L~Ls~~~ltd 524 (637)
.+ .+.+|++..+.+..|+ +.+..-..-....|.+..|+|+. ++|. .+++.++ .+++.|..|.++.+++.|
T Consensus 193 ~l-~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~L-n~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 193 KL-SRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDAL-NGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hH-HhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHH-cCCchhheeeccCCcccc
Confidence 22 2347888888888875 44433333334467777888887 4555 4455555 468888888888887765
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.59 E-value=8.5e-06 Score=85.17 Aligned_cols=122 Identities=18% Similarity=0.124 Sum_probs=74.4
Q ss_pred HhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHh
Q 041246 506 ADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVD 585 (637)
Q Consensus 506 ~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~ 585 (637)
+..+++|++|+|++|+++...-.+|-.. ..|++|.|...+ +... -..+.+.+..|+.|+|.+|. ||......+ +
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~--a~l~eL~L~~N~-l~~v-~~~~f~~ls~L~tL~L~~N~-it~~~~~aF-~ 343 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGA--AELQELYLTRNK-LEFV-SSGMFQGLSGLKTLSLYDNQ-ITTVAPGAF-Q 343 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcch--hhhhhhhcCcch-HHHH-HHHhhhccccceeeeecCCe-eEEEecccc-c
Confidence 5678999999999998776433333222 477888887643 2110 11234577899999999987 776655443 4
Q ss_pred cCCCcCEEEeecCCCCChhhhhcc--cccceeeec---CCCCCCCCeeeccCC
Q 041246 586 NCSLLRLLKLFGCSQITNVFLNGH--SNSMVQIIG---LPLTPALKHIQVLEP 633 (637)
Q Consensus 586 ~cp~L~~L~L~~C~~ltd~~l~~l--s~~~l~i~g---~~~lp~L~~L~l~~~ 633 (637)
...+|.+|.+.+++-.-+..+.-+ +..+-.++| |+..-.++.+.+++.
T Consensus 344 ~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv 396 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDV 396 (498)
T ss_pred ccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhc
Confidence 567899999988766555544311 111111344 344445666666543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.58 E-value=1.5e-05 Score=76.45 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=21.1
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHH-HHHHHHhcCCCCCEEEeccCCCCH
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDA-TVQYLADGCRSICSLKLCRNNFSD 524 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~-~l~~L~~~~~~L~~L~Ls~~~ltd 524 (637)
++.|++|+++++ .|+... ..+...||+|+.|++++ +.|.+. .+..+ ..+++|+.|+|.+|++++
T Consensus 63 L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 63 LPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSN-NKISDLNELEPL-SSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -TT--EEE--SS----S-C-HHHHHH-TT--EEE-TT-S---SCCCCGGG-GG-TT--EEE-TT-GGGG
T ss_pred hhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcC-CcCCChHHhHHH-HcCCCcceeeccCCcccc
Confidence 456666666653 344321 12223366666666666 355431 12233 346667777766666553
No 36
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=3.7e-05 Score=73.94 Aligned_cols=90 Identities=24% Similarity=0.275 Sum_probs=71.1
Q ss_pred CCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcC
Q 041246 512 ICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLR 591 (637)
Q Consensus 512 L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~ 591 (637)
++.++-+++.|.-+|+..+-. .++|+.|.+.+|..+.|-++..+..-.++|+.|+|++|+.||+.++..+. .+++|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 455555666777777777643 37888888888888888888888777889999999999999999988875 688999
Q ss_pred EEEeecCCCCChh
Q 041246 592 LLKLFGCSQITNV 604 (637)
Q Consensus 592 ~L~L~~C~~ltd~ 604 (637)
.|.|++-+.|...
T Consensus 180 ~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 180 RLHLYDLPYVANL 192 (221)
T ss_pred HHHhcCchhhhch
Confidence 9998887766544
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.56 E-value=6.4e-05 Score=89.22 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=32.5
Q ss_pred cCCCCCEEEeccCCCCHHHHHHH---HHh-cCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCC
Q 041246 508 GCRSICSLKLCRNNFSDEALAAF---LEV-SGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIK 576 (637)
Q Consensus 508 ~~~~L~~L~Ls~~~ltd~~l~~l---~~~-~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~lt 576 (637)
.+++|+.|.+..|.+.+..+... ... ..++|..+.+.+|....+..... -.|+|+.|++.+|+.+.
T Consensus 715 ~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSLSLVSCRLLE 784 (889)
T ss_pred cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh---ccCcccEEEEecccccc
Confidence 45677777777776654322110 000 01234444444554443322222 24677777777776544
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.42 E-value=4.5e-05 Score=77.20 Aligned_cols=209 Identities=16% Similarity=0.174 Sum_probs=98.3
Q ss_pred HHHHHHhCCCCCEEEecCCCC------CChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcC
Q 041246 370 LSKLARSASALQSVNLSQCSL------LTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIET 443 (637)
Q Consensus 370 l~~L~~~~~~L~~L~Ls~c~~------ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~ 443 (637)
+..+...|..|..|.+++... +...-+..-...+. +|+.+.++.|..-. +......-|.|..+.+.+.+
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~-~l~~~~~s~~~~~~---i~~~~~~kptl~t~~v~~s~- 248 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFR-NLKTLKFSALSTEN---IVDIELLKPTLQTICVHNTT- 248 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhh-hhheeeeeccchhh---eeceeecCchhheeeeeccc-
Confidence 455667788899999887521 11111111111232 78888888773211 11222344566666665521
Q ss_pred CCHH-------HHHHHHH--------------HcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHH
Q 041246 444 VDDY-------FVTEIVR--------------AHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATV 502 (637)
Q Consensus 444 l~~~-------~l~~ll~--------------~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l 502 (637)
+.+. .+...+. .....|++|+|+++ .|+. +..-.+..|.++.|++++ +.+...
T Consensus 249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~-N~i~~v-- 322 (490)
T KOG1259|consen 249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQ-NRIRTV-- 322 (490)
T ss_pred ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhh--hhhhhhhccceeEEeccc-cceeee--
Confidence 1110 0000000 01234666666653 2321 111122346667777766 344432
Q ss_pred HHHHhcCCCCCEEEeccCCCCH-HHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHH
Q 041246 503 QYLADGCRSICSLKLCRNNFSD-EALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALG 581 (637)
Q Consensus 503 ~~L~~~~~~L~~L~Ls~~~ltd-~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~ 581 (637)
..+ ..+++|..|||++|.++. .|+.. ...+++.|.|++.. +.+ + +-..++-+|..|++++|. |....-.
T Consensus 323 ~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~----KLGNIKtL~La~N~-iE~--L-SGL~KLYSLvnLDl~~N~-Ie~ldeV 392 (490)
T KOG1259|consen 323 QNL-AELPQLQLLDLSGNLLAECVGWHL----KLGNIKTLKLAQNK-IET--L-SGLRKLYSLVNLDLSSNQ-IEELDEV 392 (490)
T ss_pred hhh-hhcccceEeecccchhHhhhhhHh----hhcCEeeeehhhhh-Hhh--h-hhhHhhhhheeccccccc-hhhHHHh
Confidence 122 235667777777666543 22221 12466666666532 110 0 112234566777776665 4332222
Q ss_pred HHHhcCCCcCEEEeecCC
Q 041246 582 FIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 582 ~l~~~cp~L~~L~L~~C~ 599 (637)
.-+.++|.|++|.|.+++
T Consensus 393 ~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccccHHHHHhhcCCC
Confidence 223456667777666665
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00032 Score=67.61 Aligned_cols=84 Identities=23% Similarity=0.304 Sum_probs=57.5
Q ss_pred CcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCC
Q 041246 433 LEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSI 512 (637)
Q Consensus 433 L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L 512 (637)
++.++-++ ..+..+++..+ ..++.|+.|.+.+|..+.|.++..+....++|+.|+|++|..||+.++..+. .+++|
T Consensus 103 IeaVDAsd-s~I~~eGle~L--~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHL--RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred EEEEecCC-chHHHHHHHHH--hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 44555555 33555566554 3467777777777877777777777777777888888888888877777664 46777
Q ss_pred CEEEeccC
Q 041246 513 CSLKLCRN 520 (637)
Q Consensus 513 ~~L~Ls~~ 520 (637)
+.|.|..-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 77766543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.15 E-value=0.00011 Score=74.47 Aligned_cols=124 Identities=23% Similarity=0.193 Sum_probs=70.8
Q ss_pred CCCcEEeccCCcCCC--HHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhc
Q 041246 431 NCLEVLSVAGIETVD--DYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADG 508 (637)
Q Consensus 431 ~~L~~L~Ls~~~~l~--~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~ 508 (637)
..|+.|+|++.. ++ |+.+ +..|.++.|+++.+. ++.. ..+ ..+++|+.|++++ +.++. +.-+...
T Consensus 284 q~LtelDLS~N~-I~~iDESv-----KL~Pkir~L~lS~N~-i~~v--~nL-a~L~~L~~LDLS~-N~Ls~--~~Gwh~K 350 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESV-----KLAPKLRRLILSQNR-IRTV--QNL-AELPQLQLLDLSG-NLLAE--CVGWHLK 350 (490)
T ss_pred hhhhhccccccc-hhhhhhhh-----hhccceeEEeccccc-eeee--hhh-hhcccceEeeccc-chhHh--hhhhHhh
Confidence 357777777732 22 1221 125788888888653 4322 122 2367788888887 34432 2233345
Q ss_pred CCCCCEEEeccCCCCH-HHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 509 CRSICSLKLCRNNFSD-EALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 509 ~~~L~~L~Ls~~~ltd-~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
+.|+++|.|++|.+.+ .|+..+ -+|..|++.+..--..+.+.. +.++|-|+.|.|.+|+
T Consensus 351 LGNIKtL~La~N~iE~LSGL~KL-----YSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLSGLRKL-----YSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhhhhHhhhhhhHhh-----hhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC
Confidence 6788888888887654 234333 367777877643212222222 3467888888888776
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.08 E-value=0.0005 Score=81.79 Aligned_cols=234 Identities=21% Similarity=0.206 Sum_probs=120.0
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCh--hHHHHHHHhhcccceEEeccCCCccchhcHHHH
Q 041246 349 FSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTN--EGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPA 426 (637)
Q Consensus 349 ~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~--~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~ 426 (637)
..++.|++|-+.+...--...-..++..+|.|+.|+|++|..++. ..+..+. +|+.|+++++ .+. .++..
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-----~LryL~L~~t-~I~--~LP~~ 613 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-----HLRYLDLSDT-GIS--HLPSG 613 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-----hhhcccccCC-Ccc--ccchH
Confidence 356677777776643100111122345568888888888755443 2232232 6888888876 343 25667
Q ss_pred HhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCC-CCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHH
Q 041246 427 LRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCG-QLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYL 505 (637)
Q Consensus 427 l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~-~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L 505 (637)
++++..|.+|++.....+... ..+. ..+.+|++|.+..-. ..+...+..+ ..+.+|+.|.+..++. ..+..+
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~--~~i~-~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s~---~~~e~l 686 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESI--PGIL-LELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISSV---LLLEDL 686 (889)
T ss_pred HHHHHhhheeccccccccccc--cchh-hhcccccEEEeeccccccchhhHHhh-hcccchhhheeecchh---HhHhhh
Confidence 788888888888764332221 1111 226788888887532 2222223333 3355566665544321 111111
Q ss_pred HhcCCCCC----EEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHH--HHH--HHhCCCCcceEeeecCCCCCH
Q 041246 506 ADGCRSIC----SLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNT--ALS--LAKCSRNLLSLDLSWCRFIKD 577 (637)
Q Consensus 506 ~~~~~~L~----~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~--l~~--l~~~~~~L~~L~Ls~c~~ltd 577 (637)
..++.|. .+.+.++... .....+ ....+|+.|.+.+|....... ... ...++++|..+.+.+|....+
T Consensus 687 -~~~~~L~~~~~~l~~~~~~~~-~~~~~~--~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 687 -LGMTRLRSLLQSLSIEGCSKR-TLISSL--GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred -hhhHHHHHHhHhhhhcccccc-eeeccc--ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence 1122222 2222111110 000111 123688888888876532111 000 000245666666667765544
Q ss_pred HHHHHHHhcCCCcCEEEeecCCCCChh
Q 041246 578 EALGFIVDNCSLLRLLKLFGCSQITNV 604 (637)
Q Consensus 578 ~~l~~l~~~cp~L~~L~L~~C~~ltd~ 604 (637)
..... .-|+|+.|.+.+|..+.+.
T Consensus 763 l~~~~---f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 763 LTWLL---FAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cchhh---ccCcccEEEEecccccccC
Confidence 44332 3589999999999988765
No 42
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.65 E-value=0.00072 Score=71.23 Aligned_cols=38 Identities=37% Similarity=0.342 Sum_probs=27.3
Q ss_pred hCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCC
Q 041246 559 KCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 559 ~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
..+.+|.+|+|.++. -..+..+.++|.+|++|+++|++
T Consensus 502 ~nm~nL~tLDL~nNd---lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNND---LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhcceeccCCCc---hhhCChhhccccceeEEEecCCc
Confidence 346788888887765 23445556788888888888875
No 43
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.58 E-value=0.0011 Score=73.79 Aligned_cols=117 Identities=26% Similarity=0.292 Sum_probs=56.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHh---cCCC-CCEEEEcCCCCCCHHHHHHHHhcC----CCCCEEEeccCCCCHHHHH
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGK---KCSR-LCALDLSHLDNLTDATVQYLADGC----RSICSLKLCRNNFSDEALA 528 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~---~c~~-L~~L~L~~c~~itd~~l~~L~~~~----~~L~~L~Ls~~~ltd~~l~ 528 (637)
..++++|.+.+|. ++......+.. ..+. +..|++.. +.+.|.++..+...+ +.++.+++..|.+++.+..
T Consensus 203 ~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 203 LSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred cccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence 3466667776663 44443333222 2233 44466665 466666555554433 3446777777777666554
Q ss_pred HHHH--hcCCCccEEEcCCCCCCCHHHHHHHH---hCCCCcceEeeecCCCCC
Q 041246 529 AFLE--VSGDSLTELSLNHVRGVGLNTALSLA---KCSRNLLSLDLSWCRFIK 576 (637)
Q Consensus 529 ~l~~--~~~~~L~~L~Ls~c~~l~~~~l~~l~---~~~~~L~~L~Ls~c~~lt 576 (637)
.+.. ..++.++.|.+.... +++.+...+. .....+..+.+.++...+
T Consensus 281 ~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 281 DLAEVLVSCRQLEELSLSNNP-LTDYGVELLLEALERKTPLLHLVLGGTGKGT 332 (478)
T ss_pred HHHHHHhhhHHHHHhhcccCc-cccHHHHHHHHHhhhcccchhhhccccCccc
Confidence 4322 223455666665532 3333332222 223344455555444333
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.53 E-value=0.0004 Score=77.92 Aligned_cols=205 Identities=19% Similarity=0.161 Sum_probs=111.6
Q ss_pred HHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHH
Q 041246 370 LSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFV 449 (637)
Q Consensus 370 l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l 449 (637)
++.+...+++++.|.+-....-...+-..+.. +. .|++|.+.+|+.-+..++...- .+|++|-..+ +-+.+
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifp-F~-sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~----Sl~Al 146 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIFP-FR-SLRVLELRGCDLSTAKGLQELR---HQLEKLICHN----SLDAL 146 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceecc-cc-ceeeEEecCcchhhhhhhHHHH---Hhhhhhhhhc----cHHHH
Confidence 34445566777777776543222221122222 32 7899999888544433333221 2344444333 12233
Q ss_pred HHHHHHcC---------CCccEEEecCCCCCC--HHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEec
Q 041246 450 TEIVRAHC---------LNMRQLVLANCGQLT--DRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLC 518 (637)
Q Consensus 450 ~~ll~~~~---------~~L~~L~Ls~c~~lt--d~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls 518 (637)
..++..+. -.|...+++ |+.++ |.++ +.+|.|+.|+|++ +++++.. ....|+.|++|||+
T Consensus 147 ~~v~ascggd~~ns~~Wn~L~~a~fs-yN~L~~mD~SL----qll~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDls 217 (1096)
T KOG1859|consen 147 RHVFASCGGDISNSPVWNKLATASFS-YNRLVLMDESL----QLLPALESLNLSH-NKFTKVD---NLRRLPKLKHLDLS 217 (1096)
T ss_pred HHHHHHhccccccchhhhhHhhhhcc-hhhHHhHHHHH----HHHHHhhhhccch-hhhhhhH---HHHhcccccccccc
Confidence 33333211 134444444 22322 2233 3356799999999 5776543 33568899999999
Q ss_pred cCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 519 RNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 519 ~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
+|.+.-. ..+ ...+.+|..|.|.++.--+..+ +.++.+|+.||+++|- |.+..--...-.+..|+.|.|.|+
T Consensus 218 yN~L~~v--p~l-~~~gc~L~~L~lrnN~l~tL~g----ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 218 YNCLRHV--PQL-SMVGCKLQLLNLRNNALTTLRG----IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred cchhccc--ccc-chhhhhheeeeecccHHHhhhh----HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCC
Confidence 8875432 111 1223568888888754222222 2457899999999886 444332222234568888999887
Q ss_pred CC
Q 041246 599 SQ 600 (637)
Q Consensus 599 ~~ 600 (637)
+.
T Consensus 290 Pl 291 (1096)
T KOG1859|consen 290 PL 291 (1096)
T ss_pred cc
Confidence 63
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.23 E-value=0.0014 Score=73.78 Aligned_cols=184 Identities=20% Similarity=0.216 Sum_probs=85.5
Q ss_pred HHHHHHHhhCCCCCeeEEEeecCCCCCChH-HHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecC
Q 041246 309 DDFTRIFGACDKKNLIVLQLDLCGRILTEN-VIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQ 387 (637)
Q Consensus 309 ~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~-~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~ 387 (637)
..+..++... +.++.|.+-.... -... .+. ...+..|++|.|.+|..-+..|+..+.. .|++|.-.+
T Consensus 74 ~qLq~i~d~l--qkt~~lkl~~~pa-~~pt~pi~------ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~ 141 (1096)
T KOG1859|consen 74 EQLQRILDFL--QKTKVLKLLPSPA-RDPTEPIS------IFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHN 141 (1096)
T ss_pred HHHHHHHHHH--hhheeeeecccCC-CCCCCCce------eccccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhc
Confidence 3445555554 6666666655432 1111 121 2266778888888886655666666643 344443222
Q ss_pred CCCCChhHHHHHHHhhcc---------cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCC
Q 041246 388 CSLLTNEGINLLVKHLKS---------TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCL 458 (637)
Q Consensus 388 c~~ls~~~l~~L~~~~~~---------~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~ 458 (637)
+-.++..+...|.. .|...+.+++. +. .+...++-++.|++|+|+... +.+-. .+ ..++
T Consensus 142 ----Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~-L~--~mD~SLqll~ale~LnLshNk-~~~v~---~L-r~l~ 209 (1096)
T KOG1859|consen 142 ----SLDALRHVFASCGGDISNSPVWNKLATASFSYNR-LV--LMDESLQLLPALESLNLSHNK-FTKVD---NL-RRLP 209 (1096)
T ss_pred ----cHHHHHHHHHHhccccccchhhhhHhhhhcchhh-HH--hHHHHHHHHHHhhhhccchhh-hhhhH---HH-Hhcc
Confidence 12233333332220 23333333331 11 123445556666677766632 22211 12 2256
Q ss_pred CccEEEecCCCCCCHHHHHHHHh-cCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCH
Q 041246 459 NMRQLVLANCGQLTDRALKFVGK-KCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSD 524 (637)
Q Consensus 459 ~L~~L~Ls~c~~ltd~~l~~l~~-~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd 524 (637)
.|++|+|+.+ .++.. ..+.. .|. |..|+|.++ .++. +..+ .++.+|+.||+++|-+.+
T Consensus 210 ~LkhLDlsyN-~L~~v--p~l~~~gc~-L~~L~lrnN-~l~t--L~gi-e~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 210 KLKHLDLSYN-CLRHV--PQLSMVGCK-LQLLNLRNN-ALTT--LRGI-ENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred cccccccccc-hhccc--cccchhhhh-heeeeeccc-HHHh--hhhH-HhhhhhhccchhHhhhhc
Confidence 7777777653 23211 11111 233 667777663 3332 1111 234566777777665443
No 46
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.0011 Score=66.41 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=40.6
Q ss_pred CCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcC
Q 041246 378 SALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHC 457 (637)
Q Consensus 378 ~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~ 457 (637)
|+|+.|.++.++.-...++..++..+| +|++|+++++ .+....-...++.+.+|..|++.+|....-......+...+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P-~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAP-NLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCC-ceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 455555555543333334444555453 5555555555 23322223445566666666666653221111112222335
Q ss_pred CCccEEEecC
Q 041246 458 LNMRQLVLAN 467 (637)
Q Consensus 458 ~~L~~L~Ls~ 467 (637)
++|+.|+-..
T Consensus 143 ~~L~~LD~~d 152 (260)
T KOG2739|consen 143 PSLKYLDGCD 152 (260)
T ss_pred hhhccccccc
Confidence 6666655443
No 47
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.17 E-value=0.00043 Score=72.77 Aligned_cols=255 Identities=18% Similarity=0.167 Sum_probs=118.6
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
+.-..+.|+..+ ++.+-.+.|..+++|+.|+|+.+ .|+...-.++ +.+++|.+|-+.+++.|++-.-..+.
T Consensus 67 ~~tveirLdqN~-------I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 67 PETVEIRLDQNQ-------ISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAF-KGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcceEEEeccCC-------cccCChhhccchhhhceeccccc-chhhcChHhh-hhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 345566666543 33444456778899999999885 3433322222 34466667766665566654333333
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCc--CCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIE--TVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKF 478 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~--~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~ 478 (637)
. .. .|+.|.+.-|+ +.-. ....+..+++|..|.+.... .+....+ .....++++.+...+.+.+=.+..
T Consensus 138 g-L~-slqrLllNan~-i~Ci-r~~al~dL~~l~lLslyDn~~q~i~~~tf-----~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 138 G-LS-SLQRLLLNANH-INCI-RQDALRDLPSLSLLSLYDNKIQSICKGTF-----QGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred h-HH-HHHHHhcChhh-hcch-hHHHHHHhhhcchhcccchhhhhhccccc-----cchhccchHhhhcCccccccccch
Confidence 2 11 45555555431 1111 23456677777777665521 1111111 113456666655443232221211
Q ss_pred HHhc----------CCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEE--Eec-cC-CCCHHHHHHHHHhcCCCccEEEcC
Q 041246 479 VGKK----------CSRLCALDLSHLDNLTDATVQYLADGCRSICSL--KLC-RN-NFSDEALAAFLEVSGDSLTELSLN 544 (637)
Q Consensus 479 l~~~----------c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L--~Ls-~~-~ltd~~l~~l~~~~~~~L~~L~Ls 544 (637)
++.. ........+.+ .++....-..+. ..++.+ .+. .+ ....-....+ ...++|+.|+|+
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~-~Ri~q~~a~kf~---c~~esl~s~~~~~d~~d~~cP~~cf--~~L~~L~~lnls 282 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYY-KRINQEDARKFL---CSLESLPSRLSSEDFPDSICPAKCF--KKLPNLRKLNLS 282 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHH-HHhcccchhhhh---hhHHhHHHhhccccCcCCcChHHHH--hhcccceEeccC
Confidence 1110 00011111111 011100001110 012222 111 12 1111111112 233789999998
Q ss_pred CCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChh
Q 041246 545 HVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNV 604 (637)
Q Consensus 545 ~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~ 604 (637)
+. .++...-. .......|+.|+|..|. |.. .-..++++...|+.|+|+++ +||-.
T Consensus 283 nN-~i~~i~~~-aFe~~a~l~eL~L~~N~-l~~-v~~~~f~~ls~L~tL~L~~N-~it~~ 337 (498)
T KOG4237|consen 283 NN-KITRIEDG-AFEGAAELQELYLTRNK-LEF-VSSGMFQGLSGLKTLSLYDN-QITTV 337 (498)
T ss_pred CC-ccchhhhh-hhcchhhhhhhhcCcch-HHH-HHHHhhhccccceeeeecCC-eeEEE
Confidence 74 34432211 22345688888888776 332 22445678889999999987 55544
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.13 E-value=0.0061 Score=65.91 Aligned_cols=139 Identities=17% Similarity=0.278 Sum_probs=71.9
Q ss_pred HhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChh
Q 041246 315 FGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNE 394 (637)
Q Consensus 315 ~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~ 394 (637)
+..| ++++.|++++|. ++. +..--.+|+.|.+++|..++... ..+ .++|++|.|++|..+.
T Consensus 48 ~~~~--~~l~~L~Is~c~--L~s---------LP~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~-- 108 (426)
T PRK15386 48 IEEA--RASGRLYIKDCD--IES---------LPVLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEIS-- 108 (426)
T ss_pred HHHh--cCCCEEEeCCCC--Ccc---------cCCCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCccccc--
Confidence 3445 788888888874 221 01112358888888876643211 011 2568888888875443
Q ss_pred HHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCC-CCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCH
Q 041246 395 GINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLN-CLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTD 473 (637)
Q Consensus 395 ~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~-~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd 473 (637)
..|.+|+.|++.++. ... +..+| +|+.|.+.+........+.. ...++|++|++++|..+.
T Consensus 109 -------sLP~sLe~L~L~~n~-~~~------L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~- 170 (426)
T PRK15386 109 -------GLPESVRSLEIKGSA-TDS------IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII- 170 (426)
T ss_pred -------ccccccceEEeCCCC-Ccc------cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCccc-
Confidence 234478888776431 111 12332 56666664322111111110 113578888888876432
Q ss_pred HHHHHHHhcCCCCCEEEEcCC
Q 041246 474 RALKFVGKKCSRLCALDLSHL 494 (637)
Q Consensus 474 ~~l~~l~~~c~~L~~L~L~~c 494 (637)
+.. ....+|+.|.++.+
T Consensus 171 --LP~--~LP~SLk~L~ls~n 187 (426)
T PRK15386 171 --LPE--KLPESLQSITLHIE 187 (426)
T ss_pred --Ccc--cccccCcEEEeccc
Confidence 000 11246788877653
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.12 E-value=0.0051 Score=66.49 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=28.7
Q ss_pred CCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCcc
Q 041246 350 SLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNI 418 (637)
Q Consensus 350 ~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i 418 (637)
.|+++++|++++| .++.-. ..-++|++|.+++|..++.. ....|++|+.|++++|..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsL-----P~~LP~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTL-----PGSIPEGLEKLTVCHCPEI 107 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccC-----CchhhhhhhheEccCcccc
Confidence 4566667777666 222211 11234666666666544221 1112336666666666444
No 50
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.91 E-value=0.0081 Score=38.46 Aligned_cols=23 Identities=48% Similarity=0.587 Sum_probs=12.0
Q ss_pred CCcceEeeecCCCCCHHHHHHHH
Q 041246 562 RNLLSLDLSWCRFIKDEALGFIV 584 (637)
Q Consensus 562 ~~L~~L~Ls~c~~ltd~~l~~l~ 584 (637)
++|+.|+|++|.+|||.++..++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 45555555555555555555443
No 51
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.81 E-value=0.0041 Score=65.72 Aligned_cols=106 Identities=18% Similarity=0.029 Sum_probs=60.4
Q ss_pred hcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhc
Q 041246 507 DGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDN 586 (637)
Q Consensus 507 ~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~ 586 (637)
+.+++|..|+|+.|-+.+-...... .-+|+.|+|+....- .+.........|+.+-.+++. |.......+ .+
T Consensus 432 ~~l~kLt~L~L~NN~Ln~LP~e~~~---lv~Lq~LnlS~NrFr---~lP~~~y~lq~lEtllas~nq-i~~vd~~~l-~n 503 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLNDLPEEMGS---LVRLQTLNLSFNRFR---MLPECLYELQTLETLLASNNQ-IGSVDPSGL-KN 503 (565)
T ss_pred Hhhhcceeeecccchhhhcchhhhh---hhhhheecccccccc---cchHHHhhHHHHHHHHhcccc-ccccChHHh-hh
Confidence 4578899999998766553332221 135888998865321 111122222345555444443 443333322 35
Q ss_pred CCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 587 CSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 587 cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
+.+|.+|++.++. +... + -++..|++|++|.+.|
T Consensus 504 m~nL~tLDL~nNd-lq~I--P---------p~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 504 MRNLTTLDLQNND-LQQI--P---------PILGNMTNLRHLELDG 537 (565)
T ss_pred hhhcceeccCCCc-hhhC--C---------hhhccccceeEEEecC
Confidence 6799999998763 2111 1 1356789999999876
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.0044 Score=62.63 Aligned_cols=79 Identities=25% Similarity=0.330 Sum_probs=39.6
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCC
Q 041246 458 LNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDS 537 (637)
Q Consensus 458 ~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~ 537 (637)
.+.+.|++.+| .++|.++ +..+|.|+.|.|+- +.|+. +..+ ..|++|+.|.|..|.|.+..-...+. ..|+
T Consensus 19 ~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSv-NkIss--L~pl-~rCtrLkElYLRkN~I~sldEL~YLk-nlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSV-NKISS--LAPL-QRCTRLKELYLRKNCIESLDELEYLK-NLPS 89 (388)
T ss_pred HHhhhhcccCC-CccHHHH---HHhcccceeEEeec-ccccc--chhH-HHHHHHHHHHHHhcccccHHHHHHHh-cCch
Confidence 35556666666 3555432 33456666666665 35543 2222 34666666666666655432222111 2256
Q ss_pred ccEEEcCC
Q 041246 538 LTELSLNH 545 (637)
Q Consensus 538 L~~L~Ls~ 545 (637)
|+.|+|..
T Consensus 90 Lr~LWL~E 97 (388)
T KOG2123|consen 90 LRTLWLDE 97 (388)
T ss_pred hhhHhhcc
Confidence 66666653
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.12 E-value=0.022 Score=36.42 Aligned_cols=23 Identities=48% Similarity=0.652 Sum_probs=12.0
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHH
Q 041246 483 CSRLCALDLSHLDNLTDATVQYL 505 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd~~l~~L 505 (637)
|++|+.|+|++|..|+|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 44555555555555555555444
No 54
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.93 E-value=0.014 Score=64.98 Aligned_cols=285 Identities=21% Similarity=0.198 Sum_probs=137.3
Q ss_pred HHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHH---HHhCCCCCEEEe
Q 041246 309 DDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKL---ARSASALQSVNL 385 (637)
Q Consensus 309 ~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L---~~~~~~L~~L~L 385 (637)
..+...+..+ +.|..|+++++. +++.....+...+...-..|++|.+..|. +++.+...+ ...+..|+.+++
T Consensus 105 ~~l~~~l~t~--~~L~~L~l~~n~--l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~L~~~~~l~~l~l 179 (478)
T KOG4308|consen 105 EELAQALKTL--PTLGQLDLSGNN--LGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAVLEKNEHLTELDL 179 (478)
T ss_pred HHHHHHhccc--ccHhHhhcccCC--CccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHHHhcccchhHHHH
Confidence 4444455544 677788887776 45666655544333223567777777763 444433333 223566777777
Q ss_pred cCCCCCChhHHHHHHHhhc------ccceEEeccCCCccchhc---HHHHHhcCCC-CcEEeccCCcCCCHHHHHHHHHH
Q 041246 386 SQCSLLTNEGINLLVKHLK------STLRVLYIDHCQNIDAVS---MLPALRKLNC-LEVLSVAGIETVDDYFVTEIVRA 455 (637)
Q Consensus 386 s~c~~ls~~~l~~L~~~~~------~~L~~L~Ls~c~~i~~~~---l~~~l~~l~~-L~~L~Ls~~~~l~~~~l~~ll~~ 455 (637)
+.|. +...+...++...+ .++++|++.+| .++... +...+...+. +..|++.. ..+.+.++..+...
T Consensus 180 ~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~ 256 (478)
T KOG4308|consen 180 SLNG-LIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPC 256 (478)
T ss_pred Hhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHH
Confidence 7763 33444333332221 25777777777 333222 2223444444 55566665 34555544443221
Q ss_pred --cC-CCccEEEecCCCCCCHHHHH---HHHhcCCCCCEEEEcCCCCCCHHHHHHHHhc---CCCCCEEEeccCCCCHHH
Q 041246 456 --HC-LNMRQLVLANCGQLTDRALK---FVGKKCSRLCALDLSHLDNLTDATVQYLADG---CRSICSLKLCRNNFSDEA 526 (637)
Q Consensus 456 --~~-~~L~~L~Ls~c~~ltd~~l~---~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~---~~~L~~L~Ls~~~ltd~~ 526 (637)
.. +.++++++..|. +++.+.. .....|++++.|.++. +.+++.+...+... ...+..+.+.++.....+
T Consensus 257 l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 334 (478)
T KOG4308|consen 257 LSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRG 334 (478)
T ss_pred hcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHHHHhhhcccchhhhccccCccchh
Confidence 12 456777777763 5544433 3334566777777777 46666554444322 234444555444332222
Q ss_pred HHHHHHh--cCCCccEEEcCCCCCCCHHHHHHH--H--hCCCCcceEeeecCCCCCHHHHHHH---HhcCCCcCEEEeec
Q 041246 527 LAAFLEV--SGDSLTELSLNHVRGVGLNTALSL--A--KCSRNLLSLDLSWCRFIKDEALGFI---VDNCSLLRLLKLFG 597 (637)
Q Consensus 527 l~~l~~~--~~~~L~~L~Ls~c~~l~~~~l~~l--~--~~~~~L~~L~Ls~c~~ltd~~l~~l---~~~cp~L~~L~L~~ 597 (637)
...++.. ....+..+...+.....++....+ . ..-+.+..|++..+. +.+.+...+ ...++.+..+++..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~l~~ 413 (478)
T KOG4308|consen 335 GTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQV-IEGRGALRLAAQLASNEKLEILDLSL 413 (478)
T ss_pred HHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccc-cccHHHHHhhhhhhhcchhhhhhhhc
Confidence 2111100 001111111222222333222222 1 122345566665555 333333222 24577888888876
Q ss_pred CCCCChh
Q 041246 598 CSQITNV 604 (637)
Q Consensus 598 C~~ltd~ 604 (637)
.....+.
T Consensus 414 n~~~~~~ 420 (478)
T KOG4308|consen 414 NSLHDEG 420 (478)
T ss_pred Cccchhh
Confidence 6544433
No 55
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.61 E-value=0.0026 Score=49.72 Aligned_cols=60 Identities=30% Similarity=0.245 Sum_probs=26.2
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCC
Q 041246 458 LNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNN 521 (637)
Q Consensus 458 ~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ 521 (637)
|+|++|++++| .++...- .....+++|+.|+|+++ .++...-. .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 34555555554 2332111 11223455566666542 44321111 12345555555555554
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=0.022 Score=57.70 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=46.9
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCC
Q 041246 352 PALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLN 431 (637)
Q Consensus 352 ~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~ 431 (637)
.+.+.|+..|| .++|.. +...++.|+.|.|+-+ .|+. +..+. .|. +|++|+|..+ .|.+..-+..++++|
T Consensus 19 ~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvN-kIss--L~pl~-rCt-rLkElYLRkN-~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVN-KISS--LAPLQ-RCT-RLKELYLRKN-CIESLDELEYLKNLP 88 (388)
T ss_pred HHhhhhcccCC-CccHHH---HHHhcccceeEEeecc-cccc--chhHH-HHH-HHHHHHHHhc-ccccHHHHHHHhcCc
Confidence 34455555554 234322 2244566666666653 2321 12222 243 5666666554 333333345556666
Q ss_pred CCcEEeccCCcCC--CHHHHHHHHHHcCCCccEEE
Q 041246 432 CLEVLSVAGIETV--DDYFVTEIVRAHCLNMRQLV 464 (637)
Q Consensus 432 ~L~~L~Ls~~~~l--~~~~l~~ll~~~~~~L~~L~ 464 (637)
+|+.|+|...... ........+-..+|+|+.|+
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666666442211 12222222333456666664
No 57
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.80 E-value=0.00066 Score=63.83 Aligned_cols=131 Identities=19% Similarity=0.182 Sum_probs=56.1
Q ss_pred HHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCC-CCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHH
Q 041246 426 ALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCG-QLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQY 504 (637)
Q Consensus 426 ~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~-~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~ 504 (637)
-+..+.+|+.|++++. .+.+-+. -+ ..+++|++|+++.+. .+...++. .+|.|+.|+++. ++++...+.-
T Consensus 51 nia~l~nlevln~~nn-qie~lp~--~i-ssl~klr~lnvgmnrl~~lprgfg----s~p~levldlty-nnl~e~~lpg 121 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNN-QIEELPT--SI-SSLPKLRILNVGMNRLNILPRGFG----SFPALEVLDLTY-NNLNENSLPG 121 (264)
T ss_pred cHHHhhhhhhhhcccc-hhhhcCh--hh-hhchhhhheecchhhhhcCccccC----CCchhhhhhccc-cccccccCCc
Confidence 3445555666666552 2222111 11 125666666665321 01111111 246667777666 3444433221
Q ss_pred HHhcCCCCCEEEeccCCCCH--HHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 505 LADGCRSICSLKLCRNNFSD--EALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 505 L~~~~~~L~~L~Ls~~~ltd--~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
-+-.+..|+.|.|+.|.+.- ..+..+ .+|+.|.+.....++ +..-...+..|+.|++.+++
T Consensus 122 nff~m~tlralyl~dndfe~lp~dvg~l-----t~lqil~lrdndll~---lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 122 NFFYMTTLRALYLGDNDFEILPPDVGKL-----TNLQILSLRDNDLLS---LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred chhHHHHHHHHHhcCCCcccCChhhhhh-----cceeEEeeccCchhh---CcHHHHHHHHHHHHhcccce
Confidence 11123445555665554321 111111 455666655533222 11112234566666666665
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.57 E-value=0.027 Score=56.64 Aligned_cols=91 Identities=24% Similarity=0.284 Sum_probs=64.5
Q ss_pred ccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCC-hhHHHHHHHhhcccceEEeccCCCccchhc-HHH
Q 041246 348 NFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLT-NEGINLLVKHLKSTLRVLYIDHCQNIDAVS-MLP 425 (637)
Q Consensus 348 ~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls-~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~-l~~ 425 (637)
+-.+++|+.|.++.++.-...++..++..||+|++|+++++ .+. -..+..+.. .. +|..|++.+|....... --.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~-l~-nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKE-LE-NLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhh-hc-chhhhhcccCCccccccHHHH
Confidence 44788999999999876666778888888999999999996 444 334444443 33 79999999985443211 133
Q ss_pred HHhcCCCCcEEeccCC
Q 041246 426 ALRKLNCLEVLSVAGI 441 (637)
Q Consensus 426 ~l~~l~~L~~L~Ls~~ 441 (637)
.+.-+++|++|+-..+
T Consensus 138 vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHhhhhcccccccc
Confidence 5567888888876653
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.48 E-value=0.069 Score=38.91 Aligned_cols=38 Identities=37% Similarity=0.359 Sum_probs=24.6
Q ss_pred CCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCCh
Q 041246 562 RNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITN 603 (637)
Q Consensus 562 ~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd 603 (637)
++|++|++++|. |++ +...+..|++|+.|++++| .+++
T Consensus 1 ~~L~~L~l~~N~-i~~--l~~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITD--LPPELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCCC-Ccc--cCchHhCCCCCCEEEecCC-CCCC
Confidence 467888888876 664 3332457888888888887 4554
No 60
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.73 E-value=0.007 Score=47.23 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=20.5
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC
Q 041246 484 SRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 484 ~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
|+|+.|++++| .++...- ..+.++++|+.|+|++|.++
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N~l~ 38 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNNNLT 38 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTTTGTTESEEEETSSSES
T ss_pred CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCCccC
Confidence 45666777664 4443221 12245666666666666543
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=92.69 E-value=0.12 Score=37.73 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC
Q 041246 485 RLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 485 ~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
+|++|++++ +.|++. ......+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~-N~i~~l--~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSN-NQITDL--PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETS-SS-SSH--GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccC-CCCccc--CchHhCCCCCCEEEecCCCCC
Confidence 455555555 244432 221234555555555555554
No 62
>PLN03150 hypothetical protein; Provisional
Probab=92.66 E-value=0.14 Score=59.26 Aligned_cols=108 Identities=19% Similarity=0.096 Sum_probs=51.6
Q ss_pred CccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCc
Q 041246 459 NMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSL 538 (637)
Q Consensus 459 ~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L 538 (637)
.++.|+|+++ .++......+. .+++|+.|+|+++ .++.. +......+++|+.|+|++|+++...-..+. ..++|
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDIS-KLRHLQSINLSGN-SIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLG--QLTSL 492 (623)
T ss_pred EEEEEECCCC-CccccCCHHHh-CCCCCCEEECCCC-cccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHh--cCCCC
Confidence 3666777765 34322222233 3677777777774 44321 111224567777777777766532111121 22566
Q ss_pred cEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 539 TELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 539 ~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
+.|+|+++. ++......+.....++..+++.+|.
T Consensus 493 ~~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 493 RILNLNGNS-LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CEEECcCCc-ccccCChHHhhccccCceEEecCCc
Confidence 666666543 2211111122222345556665554
No 63
>PLN03150 hypothetical protein; Provisional
Probab=92.60 E-value=0.19 Score=58.31 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=7.1
Q ss_pred cCCCCCEEEeccCCC
Q 041246 508 GCRSICSLKLCRNNF 522 (637)
Q Consensus 508 ~~~~L~~L~Ls~~~l 522 (637)
.+++|+.|+|++|++
T Consensus 488 ~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 488 QLTSLRILNLNGNSL 502 (623)
T ss_pred cCCCCCEEECcCCcc
Confidence 344455555554443
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.29 E-value=0.1 Score=56.63 Aligned_cols=169 Identities=24% Similarity=0.247 Sum_probs=82.7
Q ss_pred cceEEeccCCCccchhcHHHHHhcC-CCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKL-NCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCS 484 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l-~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~ 484 (637)
.+..|.+.++. ++. +....... ++|+.|++++. .+.... .. + ..+++|+.|+++.| .+++.... ....+
T Consensus 117 ~l~~L~l~~n~-i~~--i~~~~~~~~~nL~~L~l~~N-~i~~l~-~~-~-~~l~~L~~L~l~~N-~l~~l~~~--~~~~~ 186 (394)
T COG4886 117 NLTSLDLDNNN-ITD--IPPLIGLLKSNLKELDLSDN-KIESLP-SP-L-RNLPNLKNLDLSFN-DLSDLPKL--LSNLS 186 (394)
T ss_pred ceeEEecCCcc-ccc--Cccccccchhhccccccccc-chhhhh-hh-h-hccccccccccCCc-hhhhhhhh--hhhhh
Confidence 57777777652 222 12223334 26777777763 222210 01 1 23677777777765 34433221 11356
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCC-CCHH-HHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCC
Q 041246 485 RLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNN-FSDE-ALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSR 562 (637)
Q Consensus 485 ~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~-ltd~-~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~ 562 (637)
.|+.|++++ +.+++..-. ......|+.|.++.|. +... .+..+ .++..|.+.+..... +......++
T Consensus 187 ~L~~L~ls~-N~i~~l~~~--~~~~~~L~~l~~~~N~~~~~~~~~~~~-----~~l~~l~l~~n~~~~---~~~~~~~l~ 255 (394)
T COG4886 187 NLNNLDLSG-NKISDLPPE--IELLSALEELDLSNNSIIELLSSLSNL-----KNLSGLELSNNKLED---LPESIGNLS 255 (394)
T ss_pred hhhheeccC-CccccCchh--hhhhhhhhhhhhcCCcceecchhhhhc-----ccccccccCCceeee---ccchhcccc
Confidence 677777777 355543221 1223447777777663 2211 11111 344444444322111 112334556
Q ss_pred CcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCC
Q 041246 563 NLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 563 ~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
+|++|++++|. +++... .....+|+.|++.+..
T Consensus 256 ~l~~L~~s~n~-i~~i~~---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 256 NLETLDLSNNQ-ISSISS---LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccceecccccc-cccccc---ccccCccCEEeccCcc
Confidence 67777777776 544332 2345677777776653
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.23 E-value=0.14 Score=49.84 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=29.2
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCC
Q 041246 483 CSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNH 545 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~ 545 (637)
..+...++|+.+ .+-.. ..+.+++.|..|.|+.|.|+.-+ ..+....++|+.|.|.+
T Consensus 41 ~d~~d~iDLtdN-dl~~l---~~lp~l~rL~tLll~nNrIt~I~--p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKL---DNLPHLPRLHTLLLNNNRITRID--PDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccceeccccc-chhhc---ccCCCccccceEEecCCcceeec--cchhhhccccceEEecC
Confidence 345666777663 32221 12245677888888887776421 11111224555555554
No 66
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=91.21 E-value=0.0023 Score=60.28 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=52.5
Q ss_pred cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSR 485 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~ 485 (637)
+|+.|+++-+.... +...+..+|.|+.|++++. ++++..+..-+. .+.+|+.|+|+++. .. ..-..+.+ +.+
T Consensus 80 klr~lnvgmnrl~~---lprgfgs~p~levldltyn-nl~e~~lpgnff-~m~tlralyl~dnd-fe-~lp~dvg~-lt~ 151 (264)
T KOG0617|consen 80 KLRILNVGMNRLNI---LPRGFGSFPALEVLDLTYN-NLNENSLPGNFF-YMTTLRALYLGDND-FE-ILPPDVGK-LTN 151 (264)
T ss_pred hhhheecchhhhhc---CccccCCCchhhhhhcccc-ccccccCCcchh-HHHHHHHHHhcCCC-cc-cCChhhhh-hcc
Confidence 45666555432111 2344567888888888773 343332211110 13567777777643 11 00112222 567
Q ss_pred CCEEEEcCCCCCCH-HHHHHHHhcCCCCCEEEeccCCCC
Q 041246 486 LCALDLSHLDNLTD-ATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 486 L~~L~L~~c~~itd-~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
|+.|.+..+..++- ..+. .+..|+.|.+.+|+++
T Consensus 152 lqil~lrdndll~lpkeig----~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 152 LQILSLRDNDLLSLPKEIG----DLTRLRELHIQGNRLT 186 (264)
T ss_pred eeEEeeccCchhhCcHHHH----HHHHHHHHhcccceee
Confidence 77777776433331 1222 2345777777777643
No 67
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.85 E-value=0.27 Score=30.61 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=14.5
Q ss_pred CCCcceEeeecCCCCCHHHHHHHH
Q 041246 561 SRNLLSLDLSWCRFIKDEALGFIV 584 (637)
Q Consensus 561 ~~~L~~L~Ls~c~~ltd~~l~~l~ 584 (637)
+++|++|+|++|. |++.++..|+
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 3677777777777 7777776664
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=88.82 E-value=0.25 Score=53.66 Aligned_cols=170 Identities=24% Similarity=0.249 Sum_probs=107.2
Q ss_pred CCCCEEEecCCCCCCh-hHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHc
Q 041246 378 SALQSVNLSQCSLLTN-EGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAH 456 (637)
Q Consensus 378 ~~L~~L~Ls~c~~ls~-~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~ 456 (637)
+.+..|.+.++ .+++ ........ ++|+.|+++++. +.. +...+..+++|+.|+++.+. +.+-.... ..
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~~~~~~---~nL~~L~l~~N~-i~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~~---~~ 184 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPLIGLLK---SNLKELDLSDNK-IES--LPSPLRNLPNLKNLDLSFND-LSDLPKLL---SN 184 (394)
T ss_pred cceeEEecCCc-ccccCccccccch---hhcccccccccc-hhh--hhhhhhccccccccccCCch-hhhhhhhh---hh
Confidence 77899999885 3332 22222210 279999999873 332 22467899999999999853 33332211 13
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCH--HHHHHHHHhc
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSD--EALAAFLEVS 534 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd--~~l~~l~~~~ 534 (637)
.+.|+.|+++++ .+++.. ........|++|.+.+...+... .....+.++..|.+.++++.+ ..+..
T Consensus 185 ~~~L~~L~ls~N-~i~~l~--~~~~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n~~~~~~~~~~~----- 253 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLP--PEIELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSNNKLEDLPESIGN----- 253 (394)
T ss_pred hhhhhheeccCC-ccccCc--hhhhhhhhhhhhhhcCCcceecc---hhhhhcccccccccCCceeeeccchhcc-----
Confidence 689999999986 454432 22122456999999985333322 122456778888888888765 33322
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 535 GDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 535 ~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
.++|+.|+++++. +++... .....+|+.|+++++.
T Consensus 254 l~~l~~L~~s~n~-i~~i~~---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 254 LSNLETLDLSNNQ-ISSISS---LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccceecccccc-cccccc---ccccCccCEEeccCcc
Confidence 3679999999864 332211 4467899999999886
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.54 E-value=0.33 Score=30.17 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=10.6
Q ss_pred CCCCEEEeccCCCCHHHHHHH
Q 041246 510 RSICSLKLCRNNFSDEALAAF 530 (637)
Q Consensus 510 ~~L~~L~Ls~~~ltd~~l~~l 530 (637)
++|+.|+|++|.++++++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455566666555555555543
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.51 E-value=0.1 Score=57.31 Aligned_cols=105 Identities=23% Similarity=0.146 Sum_probs=66.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
+.+|..|++.+. .+.. +..+...|++|+.|++++ +.|++.. .+ ..++.|+.|++.+|.+.+..-... ..
T Consensus 94 ~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~-N~I~~i~--~l-~~l~~L~~L~l~~N~i~~~~~~~~----l~ 162 (414)
T KOG0531|consen 94 LKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSF-NKITKLE--GL-STLTLLKELNLSGNLISDISGLES----LK 162 (414)
T ss_pred ccceeeeecccc-chhh--cccchhhhhcchheeccc-ccccccc--ch-hhccchhhheeccCcchhccCCcc----ch
Confidence 578888988874 3432 223134588999999999 5777532 22 234569999999998765322111 36
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCC
Q 041246 537 SLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRF 574 (637)
Q Consensus 537 ~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ 574 (637)
.|+.++++++........ . ...+.+|+.+++.++..
T Consensus 163 ~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSI 198 (414)
T ss_pred hhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCch
Confidence 788888887543222111 1 35678899999988873
No 71
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=85.38 E-value=0.27 Score=47.89 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=16.9
Q ss_pred ccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCC
Q 041246 348 NFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQC 388 (637)
Q Consensus 348 ~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c 388 (637)
+.+++.|.+|.|+++ .|+... ..+...+|+|..|.+.++
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNN 98 (233)
T ss_pred CCCccccceEEecCC-cceeec-cchhhhccccceEEecCc
Confidence 335555555555553 222211 011223455555555554
No 72
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.79 E-value=2.2 Score=27.66 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=18.5
Q ss_pred CCCCEEEeccCCCCHHHHHHHHH
Q 041246 510 RSICSLKLCRNNFSDEALAAFLE 532 (637)
Q Consensus 510 ~~L~~L~Ls~~~ltd~~l~~l~~ 532 (637)
++|+.|+|++|.++++|...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 56888999999998888877653
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.40 E-value=2.1 Score=27.75 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=18.2
Q ss_pred CCcceEeeecCCCCCHHHHHHHHh
Q 041246 562 RNLLSLDLSWCRFIKDEALGFIVD 585 (637)
Q Consensus 562 ~~L~~L~Ls~c~~ltd~~l~~l~~ 585 (637)
++|++|+|++|. +++.+...++.
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHH
Confidence 578888888887 88888877765
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=76.20 E-value=0.6 Score=51.32 Aligned_cols=81 Identities=28% Similarity=0.317 Sum_probs=38.0
Q ss_pred cCCCCccEEEecCCCCCCH-HHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHH
Q 041246 349 FSLPALTTISLTGAYQLTD-FGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPAL 427 (637)
Q Consensus 349 ~~l~~L~~L~Ls~~~~isd-~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l 427 (637)
..+++|++|+|+++. |++ .++.. ++.|+.|++++|..-+-.++.. + .+|+.++++++....... .. +
T Consensus 115 ~~~~~L~~L~ls~N~-I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~~----l-~~L~~l~l~~n~i~~ie~-~~-~ 182 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNK-ITKLEGLST----LTLLKELNLSGNLISDISGLES----L-KSLKLLDLSYNRIVDIEN-DE-L 182 (414)
T ss_pred hhhhcchheeccccc-cccccchhh----ccchhhheeccCcchhccCCcc----c-hhhhcccCCcchhhhhhh-hh-h
Confidence 356667777776642 322 23322 2446667776652111112211 1 156666666653222111 01 3
Q ss_pred hcCCCCcEEeccCC
Q 041246 428 RKLNCLEVLSVAGI 441 (637)
Q Consensus 428 ~~l~~L~~L~Ls~~ 441 (637)
..+..|+.+++.+.
T Consensus 183 ~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 183 SELISLEELDLGGN 196 (414)
T ss_pred hhccchHHHhccCC
Confidence 55666666666553
No 75
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.58 E-value=5.5 Score=44.50 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=33.8
Q ss_pred HcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCC-CCCH-HHHHHHHhcCCCCCEEEeccCCC
Q 041246 455 AHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLD-NLTD-ATVQYLADGCRSICSLKLCRNNF 522 (637)
Q Consensus 455 ~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~-~itd-~~l~~L~~~~~~L~~L~Ls~~~l 522 (637)
...+.+..++|+++.-..-..+..+.+..|+|..|+|+++. .+.. ..+..+ +...|+.|-+.+|++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcc
Confidence 34566666666665433334555566666666666666630 2221 112221 233466666666654
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=72.03 E-value=1.7 Score=40.08 Aligned_cols=84 Identities=21% Similarity=0.198 Sum_probs=41.7
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCc
Q 041246 485 RLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNL 564 (637)
Q Consensus 485 ~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L 564 (637)
.+..++|+.|.-.-.....+.......|...+|++|.+.+..-. | ....+.++.|+|++. .+.+.... ...++.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k-f-t~kf~t~t~lNl~~n-eisdvPeE--~Aam~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK-F-TIKFPTATTLNLANN-EISDVPEE--LAAMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH-H-hhccchhhhhhcchh-hhhhchHH--HhhhHHh
Confidence 35667777773321221222223445677778877765432111 1 112245666666653 23322111 2246677
Q ss_pred ceEeeecCC
Q 041246 565 LSLDLSWCR 573 (637)
Q Consensus 565 ~~L~Ls~c~ 573 (637)
+.|++++|+
T Consensus 103 r~lNl~~N~ 111 (177)
T KOG4579|consen 103 RSLNLRFNP 111 (177)
T ss_pred hhcccccCc
Confidence 777777776
No 77
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.06 E-value=14 Score=41.47 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=43.8
Q ss_pred hccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCC--ChhHHHHHHHhhcccceEEeccCCCccchhc--
Q 041246 347 QNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLL--TNEGINLLVKHLKSTLRVLYIDHCQNIDAVS-- 422 (637)
Q Consensus 347 ~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~l--s~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~-- 422 (637)
...+.+.+..++|+++....-..+..+....|+|+.|+|+++... +...+..+.. ..|++|-+.+++-.+...
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~---l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG---LPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC---CCHHHeeecCCccccchhhh
Confidence 344666666777666544344455556666677777777765211 1111221111 146666666655433221
Q ss_pred ---HHHHHhcCCCCcEEe
Q 041246 423 ---MLPALRKLNCLEVLS 437 (637)
Q Consensus 423 ---l~~~l~~l~~L~~L~ 437 (637)
+...-..+|+|..||
T Consensus 290 s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHHhcchheeec
Confidence 112224566666555
No 78
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=57.54 E-value=8.6 Score=24.56 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=17.3
Q ss_pred CcceEeeecCCCCCHHHHHHHHhcCC
Q 041246 563 NLLSLDLSWCRFIKDEALGFIVDNCS 588 (637)
Q Consensus 563 ~L~~L~Ls~c~~ltd~~l~~l~~~cp 588 (637)
+|++|+|.....-.+..+..+..+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 46777777766444556777777776
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=57.45 E-value=7.1 Score=22.19 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=4.2
Q ss_pred CCCEEEeccCCC
Q 041246 511 SICSLKLCRNNF 522 (637)
Q Consensus 511 ~L~~L~Ls~~~l 522 (637)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=57.41 E-value=4.8 Score=37.20 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=18.0
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC
Q 041246 483 CSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
.|.++.|++.+ +.+++.... ++ .++.|+.|+++.|.+.
T Consensus 76 f~t~t~lNl~~-neisdvPeE-~A-am~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 76 FPTATTLNLAN-NEISDVPEE-LA-AMPALRSLNLRFNPLN 113 (177)
T ss_pred cchhhhhhcch-hhhhhchHH-Hh-hhHHhhhcccccCccc
Confidence 34455555555 345444333 22 3455555555555443
No 81
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=54.64 E-value=25 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=23.4
Q ss_pred CCCcHHHHHHHHHHHccccccCCC--CCCHHHHHHH
Q 041246 239 GVPSLMDLSLKILARNAEAIVSLE--LVPDFLRHKL 272 (637)
Q Consensus 239 ~~psL~dLcL~~l~~~i~~l~~L~--~Lp~~l~~~l 272 (637)
++++|++||-..+..+... ..+. .||..++..+
T Consensus 2 k~~SLQ~LCR~~I~~~t~~-~~I~~LPLP~~Lk~yL 36 (43)
T cd03742 2 KVLSLQDLCCRAIVSCTPV-YLIDKLPLPVSIKSHL 36 (43)
T ss_pred ccccHHHHHHHHHHHhCCc-chhhhCCCCHHHHHHH
Confidence 6889999999999888651 2333 4667776654
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=40.83 E-value=5.2 Score=44.91 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=20.2
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCH
Q 041246 485 RLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSD 524 (637)
Q Consensus 485 ~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd 524 (637)
.|..|+++. ++|+-..+. +.+|+.|++|-|.+|.+..
T Consensus 212 pLi~lDfSc-Nkis~iPv~--fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 212 PLIRLDFSC-NKISYLPVD--FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ceeeeeccc-Cceeecchh--hhhhhhheeeeeccCCCCC
Confidence 356666654 455543322 2346666666666666553
No 83
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=33.91 E-value=63 Score=23.35 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHHHHHccccccCCCCCCHHH
Q 041246 239 GVPSLMDLSLKILARNAEAIVSLELVPDFL 268 (637)
Q Consensus 239 ~~psL~dLcL~~l~~~i~~l~~L~~Lp~~l 268 (637)
.+|+|+.||-..+-.++.....+..||..+
T Consensus 2 ~v~SLQHLCR~~In~~~~~~~~~~~LP~~L 31 (42)
T cd03737 2 SVSTLQHLCRKTVNGHLDSYEKRTQLPLPI 31 (42)
T ss_pred CcccHHHHHHHHHHHhcCcccchhhccHHH
Confidence 478999999999887766444556677653
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=32.03 E-value=19 Score=21.76 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=6.7
Q ss_pred CCEEEeccCCCC
Q 041246 512 ICSLKLCRNNFS 523 (637)
Q Consensus 512 L~~L~Ls~~~lt 523 (637)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 555666655544
No 85
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=31.33 E-value=14 Score=24.93 Aligned_cols=14 Identities=57% Similarity=0.909 Sum_probs=12.2
Q ss_pred cccccccchhhhhh
Q 041246 65 QTENEEKDYAVHCV 78 (637)
Q Consensus 65 ~~~~~~~~~~~~~~ 78 (637)
=++|+-.|||-|||
T Consensus 18 Wtanea~~fAKhCv 31 (32)
T PF11216_consen 18 WTANEAADFAKHCV 31 (32)
T ss_pred CcHhHHHHHHHhhc
Confidence 46788999999997
No 86
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=31.20 E-value=1.1e+02 Score=22.20 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHccccccCCC--CCCHHHHHH
Q 041246 239 GVPSLMDLSLKILARNAEAIVSLE--LVPDFLRHK 271 (637)
Q Consensus 239 ~~psL~dLcL~~l~~~i~~l~~L~--~Lp~~l~~~ 271 (637)
++++|++||-..+..++.. ..+. .+|..+++-
T Consensus 2 ~~~sLQhLCR~tI~~~~~~-~~i~~lpLP~~LKdy 35 (43)
T cd03735 2 RVRPLQELCRKSIVATFGR-ENLARIPLNPVLKDY 35 (43)
T ss_pred CccCHHHHHHHHHHHhcCc-cccccCcCCHHHHHH
Confidence 5789999999998877652 2222 566666543
No 87
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=25.63 E-value=3.1e+02 Score=21.33 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=30.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHH-----hcCCCcCEEEe
Q 041246 536 DSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIV-----DNCSLLRLLKL 595 (637)
Q Consensus 536 ~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~-----~~cp~L~~L~L 595 (637)
.++..|.+.+..-++...+..+ +-+.+.+..+. ++...+..++ +..|+|+.|.+
T Consensus 11 ~~~~~l~i~~~~~it~~~Ll~~-----nc~~i~l~~~~-~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 11 RNLEKLSISSSNWITLDDLLNM-----NCKKIELWNSK-FTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCCEEEEccCCcccHHHHHhc-----CCCEEEEECCC-CCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 4566667765555555444332 34455665554 7777665544 34667777665
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=24.27 E-value=55 Score=20.29 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=9.3
Q ss_pred CCCCEEEeccCCCC
Q 041246 510 RSICSLKLCRNNFS 523 (637)
Q Consensus 510 ~~L~~L~Ls~~~lt 523 (637)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 46777777777654
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=24.27 E-value=55 Score=20.29 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=9.3
Q ss_pred CCCCEEEeccCCCC
Q 041246 510 RSICSLKLCRNNFS 523 (637)
Q Consensus 510 ~~L~~L~Ls~~~lt 523 (637)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 46777777777654
No 90
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=23.00 E-value=9.1 Score=43.08 Aligned_cols=103 Identities=20% Similarity=0.178 Sum_probs=44.3
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCC
Q 041246 458 LNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDS 537 (637)
Q Consensus 458 ~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~ 537 (637)
-.|+.|.++++ +++-.. ..|. ..+.|..|+.+.|.-.+- ..-..++.+|+.|.+..|++.+..- .+ .+-.
T Consensus 143 lpLkvli~sNN-kl~~lp-~~ig-~~~tl~~ld~s~nei~sl---psql~~l~slr~l~vrRn~l~~lp~-El---~~Lp 212 (722)
T KOG0532|consen 143 LPLKVLIVSNN-KLTSLP-EEIG-LLPTLAHLDVSKNEIQSL---PSQLGYLTSLRDLNVRRNHLEDLPE-EL---CSLP 212 (722)
T ss_pred CcceeEEEecC-ccccCC-cccc-cchhHHHhhhhhhhhhhc---hHHhhhHHHHHHHHHhhhhhhhCCH-HH---hCCc
Confidence 35666666653 232111 1122 244555666655422211 1111223445555555555332110 11 1235
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 538 LTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 538 L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
|..|+++.+ ++.- +..-+.++.+|++|.|.+|+
T Consensus 213 Li~lDfScN-kis~--iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 213 LIRLDFSCN-KISY--LPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeeeecccC-ceee--cchhhhhhhhheeeeeccCC
Confidence 556666532 2221 11123356677777777766
No 91
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=21.37 E-value=2.4e+02 Score=20.26 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHHHccccccCCCCCCHHHHH
Q 041246 239 GVPSLMDLSLKILARNAEAIVSLELVPDFLRH 270 (637)
Q Consensus 239 ~~psL~dLcL~~l~~~i~~l~~L~~Lp~~l~~ 270 (637)
.+|+|+.||-..+...+..+..+ .+|..++.
T Consensus 2 ~~~sLQHLCR~~I~~~~~~i~~L-pLP~~L~~ 32 (41)
T cd03734 2 SARSLQHLCRLVINRLVTDVDCL-PLPRRMAD 32 (41)
T ss_pred CCccHHHHHHHHHHHhcCCcccC-CCCHHHHH
Confidence 47899999998888776644422 45555543
No 92
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=20.38 E-value=1.3e+02 Score=32.03 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=34.4
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHhhC-CCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 294 SPTEIRLNDCSEINTDDFTRIFGAC-DKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 294 ~l~~L~Ls~c~~l~~~~l~~l~~~c-~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
.++++++++...++...+..+...+ ...+.+...|.+.. .+|.... .+...+.-++.|+.|++.++ +|+..++.+
T Consensus 199 ~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr--~~d~vA~-a~a~ml~~n~sl~slnvesn-FItg~gi~a 274 (353)
T KOG3735|consen 199 GLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTR--SSDPVAF-AIAEMLKENKSLTSLNVESN-FITGLGIMA 274 (353)
T ss_pred CceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhccc--CCchhHH-HHHHHHhhcchhhheecccc-ccccHHHHH
Confidence 4556666666666665554443332 11333333333322 2222221 12223334555555555552 455555554
Q ss_pred HHH
Q 041246 373 LAR 375 (637)
Q Consensus 373 L~~ 375 (637)
+..
T Consensus 275 ~~~ 277 (353)
T KOG3735|consen 275 LLR 277 (353)
T ss_pred HHH
Confidence 443
Done!