Query 041246
Match_columns 637
No_of_seqs 351 out of 2922
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 2.5E-24 8.4E-29 243.5 27.5 297 294-607 139-506 (592)
2 2p1m_B Transport inhibitor res 99.9 6.4E-24 2.2E-28 240.0 29.5 317 292-633 129-516 (594)
3 2p1m_B Transport inhibitor res 99.9 1.7E-22 5.9E-27 228.3 29.6 297 293-609 184-526 (594)
4 3ogk_B Coronatine-insensitive 99.9 9.4E-23 3.2E-27 230.5 27.2 299 293-607 112-481 (592)
5 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-20 3.8E-25 206.8 27.4 321 293-633 28-380 (461)
6 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-20 5.4E-25 205.6 28.4 321 294-634 86-438 (461)
7 2ast_B S-phase kinase-associat 99.8 1.2E-19 4.3E-24 190.2 23.0 308 260-620 8-325 (336)
8 2ca6_A RAN GTPase-activating p 99.8 1.9E-17 6.6E-22 177.5 22.8 270 313-596 26-338 (386)
9 2ast_B S-phase kinase-associat 99.8 2.4E-17 8.4E-22 172.7 21.2 279 304-609 10-291 (336)
10 2ca6_A RAN GTPase-activating p 99.8 7.6E-17 2.6E-21 172.9 24.1 259 335-604 16-318 (386)
11 4fmz_A Internalin; leucine ric 99.6 1.4E-15 4.7E-20 160.1 16.0 277 293-633 66-343 (347)
12 4fmz_A Internalin; leucine ric 99.6 2.1E-15 7.2E-20 158.7 13.7 278 293-633 44-321 (347)
13 3goz_A Leucine-rich repeat-con 99.6 2.5E-13 8.4E-18 144.3 23.1 244 321-573 22-295 (362)
14 3goz_A Leucine-rich repeat-con 99.5 6.3E-13 2.2E-17 141.2 24.2 256 286-551 14-298 (362)
15 3v47_A TOLL-like receptor 5B a 99.5 5.8E-16 2E-20 169.1 -3.1 130 484-632 275-404 (455)
16 1o6v_A Internalin A; bacterial 99.5 5.1E-14 1.7E-18 154.8 11.4 164 406-598 178-341 (466)
17 1o6v_A Internalin A; bacterial 99.5 3.6E-13 1.2E-17 148.0 14.1 253 293-599 112-364 (466)
18 2z81_A CD282 antigen, TOLL-lik 99.4 4.4E-14 1.5E-18 157.9 5.4 88 508-598 332-420 (549)
19 3v47_A TOLL-like receptor 5B a 99.4 5.8E-15 2E-19 161.1 -2.3 301 293-632 30-380 (455)
20 2id5_A Lingo-1, leucine rich r 99.4 2.6E-15 8.8E-20 165.3 -5.6 274 294-598 33-306 (477)
21 2z7x_B TOLL-like receptor 1, v 99.4 1.4E-13 4.7E-18 153.1 8.0 59 350-415 88-148 (520)
22 2z81_A CD282 antigen, TOLL-lik 99.4 8.8E-14 3E-18 155.5 4.9 65 535-602 333-400 (549)
23 3un9_A NLR family member X1; l 99.4 1.1E-11 3.9E-16 132.3 19.6 182 321-532 72-261 (372)
24 3o6n_A APL1; leucine-rich repe 99.4 1.7E-14 6E-19 154.5 -4.4 261 321-632 69-348 (390)
25 2id5_A Lingo-1, leucine rich r 99.3 1.7E-14 5.8E-19 158.8 -5.1 255 321-603 32-286 (477)
26 3t6q_A CD180 antigen; protein- 99.3 5.3E-15 1.8E-19 167.6 -9.6 279 293-598 254-533 (606)
27 3bz5_A Internalin-J, INLJ; leu 99.3 5.8E-14 2E-18 154.3 -1.8 202 293-546 42-243 (457)
28 3t6q_A CD180 antigen; protein- 99.3 6.5E-15 2.2E-19 166.9 -10.0 259 322-606 255-517 (606)
29 3oja_B Anopheles plasmodium-re 99.3 3.8E-14 1.3E-18 160.8 -3.7 123 484-632 232-354 (597)
30 2z80_A TOLL-like receptor 2, v 99.3 8.8E-14 3E-18 147.0 -1.2 240 349-603 73-316 (353)
31 3o53_A Protein LRIM1, AGAP0063 99.3 2.1E-14 7.2E-19 149.8 -6.4 253 310-603 25-277 (317)
32 3un9_A NLR family member X1; l 99.3 2.2E-11 7.4E-16 130.1 16.8 174 405-585 72-261 (372)
33 4ecn_A Leucine-rich repeat pro 99.3 1.4E-13 4.9E-18 161.9 -1.2 279 292-599 490-787 (876)
34 1ziw_A TOLL-like receptor 3; i 99.3 8E-14 2.7E-18 160.2 -3.8 276 293-598 25-306 (680)
35 2z7x_B TOLL-like receptor 1, v 99.3 6.5E-12 2.2E-16 139.5 11.1 123 293-441 21-148 (520)
36 4eco_A Uncharacterized protein 99.3 7.3E-14 2.5E-18 159.8 -5.5 278 293-599 249-547 (636)
37 3rgz_A Protein brassinosteroid 99.3 9.3E-15 3.2E-19 170.8 -13.3 131 483-632 393-523 (768)
38 3e4g_A ATP synthase subunit S, 99.3 3.2E-12 1.1E-16 121.3 6.6 93 511-606 62-157 (176)
39 4ecn_A Leucine-rich repeat pro 99.3 5.7E-13 2E-17 156.8 1.7 269 321-632 491-785 (876)
40 3rgz_A Protein brassinosteroid 99.3 1.5E-14 5E-19 169.1 -12.6 157 293-469 100-258 (768)
41 1xku_A Decorin; proteoglycan, 99.3 7.4E-14 2.5E-18 146.1 -6.3 271 321-632 52-328 (330)
42 2z63_A TOLL-like receptor 4, v 99.3 1.5E-14 5.3E-19 162.2 -12.7 108 293-416 52-160 (570)
43 3bz5_A Internalin-J, INLJ; leu 99.2 1.8E-12 6E-17 142.4 3.1 206 321-577 42-247 (457)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 3.4E-12 1.2E-16 143.5 5.4 123 293-441 52-179 (562)
45 1ziw_A TOLL-like receptor 3; i 99.2 4.1E-13 1.4E-17 154.2 -2.2 259 321-599 97-364 (680)
46 3vq2_A TLR4, TOLL-like recepto 99.2 1.1E-12 3.7E-17 148.5 1.3 81 509-599 306-387 (606)
47 3o6n_A APL1; leucine-rich repe 99.2 3.3E-13 1.1E-17 144.5 -3.2 151 321-494 45-196 (390)
48 2z63_A TOLL-like receptor 4, v 99.2 4.3E-14 1.5E-18 158.5 -11.1 110 507-632 418-527 (570)
49 4eco_A Uncharacterized protein 99.2 5.9E-13 2E-17 152.3 -2.6 296 293-631 206-544 (636)
50 2z80_A TOLL-like receptor 2, v 99.2 2.4E-12 8E-17 136.0 2.2 255 351-632 51-310 (353)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 3.7E-12 1.3E-16 143.2 3.4 105 293-416 76-180 (562)
52 3o53_A Protein LRIM1, AGAP0063 99.2 9.3E-13 3.2E-17 137.3 -1.8 233 336-601 18-250 (317)
53 3vq2_A TLR4, TOLL-like recepto 99.2 1.4E-13 4.8E-18 155.9 -9.1 274 293-603 285-560 (606)
54 3e4g_A ATP synthase subunit S, 99.2 1.9E-11 6.5E-16 115.9 6.6 108 458-591 61-170 (176)
55 3oja_B Anopheles plasmodium-re 99.2 8.6E-13 2.9E-17 149.7 -3.3 126 457-599 231-356 (597)
56 3j0a_A TOLL-like receptor 5; m 99.2 8.3E-14 2.8E-18 164.4 -12.9 134 293-441 24-158 (844)
57 2ft3_A Biglycan; proteoglycan, 99.2 1.1E-13 3.7E-18 145.1 -10.8 270 321-632 54-329 (332)
58 3oja_A Leucine-rich immune mol 99.1 8.2E-13 2.8E-17 146.2 -6.1 237 321-596 34-270 (487)
59 1xku_A Decorin; proteoglycan, 99.1 2.3E-12 7.8E-17 134.7 -2.7 272 293-598 52-329 (330)
60 3j0a_A TOLL-like receptor 5; m 99.1 3.2E-13 1.1E-17 159.4 -11.2 256 321-599 24-325 (844)
61 4glp_A Monocyte differentiatio 99.1 2.3E-12 7.9E-17 133.7 -3.7 106 483-598 196-304 (310)
62 3oja_A Leucine-rich immune mol 99.1 2.4E-12 8.1E-17 142.5 -4.3 229 340-601 22-250 (487)
63 2z66_A Variable lymphocyte rec 99.1 1.9E-13 6.6E-18 141.3 -13.4 60 321-388 28-88 (306)
64 4glp_A Monocyte differentiatio 99.1 1.6E-11 5.6E-16 127.3 0.6 154 456-632 143-303 (310)
65 1h6u_A Internalin H; cell adhe 99.1 8E-11 2.7E-15 122.2 5.2 78 351-441 40-117 (308)
66 3zyi_A Leucine-rich repeat-con 99.1 1.8E-12 6E-17 141.9 -7.8 227 321-573 75-301 (452)
67 1wwl_A Monocyte differentiatio 99.0 1.7E-11 5.9E-16 127.3 -0.2 94 428-523 170-266 (312)
68 3zyj_A Leucine-rich repeat-con 99.0 1.6E-12 5.3E-17 141.8 -8.8 227 321-573 64-290 (440)
69 1wwl_A Monocyte differentiatio 99.0 2.7E-11 9.2E-16 125.8 0.7 201 406-632 96-305 (312)
70 4fcg_A Uncharacterized protein 99.0 4.4E-12 1.5E-16 133.0 -5.4 83 350-442 79-161 (328)
71 2ft3_A Biglycan; proteoglycan, 99.0 4.6E-13 1.6E-17 140.3 -13.2 272 293-599 54-331 (332)
72 4fcg_A Uncharacterized protein 99.0 6.4E-12 2.2E-16 131.8 -4.7 85 320-419 80-164 (328)
73 3g06_A SSPH2 (leucine-rich rep 99.0 4.7E-10 1.6E-14 127.5 10.2 239 293-604 61-299 (622)
74 3g06_A SSPH2 (leucine-rich rep 99.0 3.2E-10 1.1E-14 129.0 8.6 211 321-598 61-271 (622)
75 1ogq_A PGIP-2, polygalacturona 99.0 1.7E-13 5.8E-18 142.8 -17.2 182 321-523 50-234 (313)
76 3zyi_A Leucine-rich repeat-con 99.0 1E-11 3.5E-16 135.8 -3.9 232 351-603 74-305 (452)
77 2z66_A Variable lymphocyte rec 99.0 1.1E-12 3.8E-17 135.5 -11.1 232 352-602 28-262 (306)
78 3zyj_A Leucine-rich repeat-con 99.0 6.5E-12 2.2E-16 136.9 -5.7 108 406-523 161-268 (440)
79 1ozn_A Reticulon 4 receptor; N 99.0 1.3E-11 4.5E-16 126.1 -3.5 207 350-573 30-236 (285)
80 1ogq_A PGIP-2, polygalacturona 99.0 4.2E-13 1.4E-17 139.8 -16.7 226 352-599 50-279 (313)
81 2ra8_A Uncharacterized protein 99.0 3.1E-09 1.1E-13 112.8 12.5 87 509-599 251-341 (362)
82 1h6u_A Internalin H; cell adhe 98.9 5.2E-10 1.8E-14 116.1 6.3 99 321-441 41-139 (308)
83 2ra8_A Uncharacterized protein 98.9 3.3E-09 1.1E-13 112.7 12.4 72 457-530 251-327 (362)
84 1ozn_A Reticulon 4 receptor; N 98.9 3.6E-11 1.2E-15 122.9 -3.7 206 321-548 32-237 (285)
85 1jl5_A Outer protein YOPM; leu 98.8 9.3E-10 3.2E-14 120.6 3.0 237 294-599 132-368 (454)
86 4ezg_A Putative uncharacterize 98.8 8E-10 2.7E-14 106.7 1.5 127 457-598 65-191 (197)
87 1io0_A Tropomodulin; LRR prote 98.8 9.2E-08 3.1E-12 91.5 15.6 121 457-579 35-167 (185)
88 1jl5_A Outer protein YOPM; leu 98.8 2.9E-09 9.8E-14 116.7 4.5 238 293-599 71-308 (454)
89 2z62_A TOLL-like receptor 4, v 98.8 1E-10 3.6E-15 118.9 -6.6 204 352-573 28-235 (276)
90 1io0_A Tropomodulin; LRR prote 98.7 2.4E-07 8.2E-12 88.6 16.4 127 423-552 28-166 (185)
91 3rfs_A Internalin B, repeat mo 98.7 4E-10 1.4E-14 114.6 -4.4 78 508-598 155-232 (272)
92 2o6q_A Variable lymphocyte rec 98.7 2.5E-10 8.6E-15 115.9 -6.3 154 353-523 17-170 (270)
93 1h6t_A Internalin B; cell adhe 98.7 6.5E-09 2.2E-13 106.9 4.2 165 406-599 47-211 (291)
94 2xwt_C Thyrotropin receptor; s 98.7 1.1E-10 3.6E-15 116.3 -9.4 62 457-523 104-169 (239)
95 1h6t_A Internalin B; cell adhe 98.7 1.7E-08 5.7E-13 103.8 6.2 170 377-577 45-214 (291)
96 4ezg_A Putative uncharacterize 98.7 1.2E-08 4E-13 98.4 4.6 15 559-573 178-192 (197)
97 2z62_A TOLL-like receptor 4, v 98.7 3.1E-10 1.1E-14 115.4 -7.2 203 378-598 28-234 (276)
98 1m9s_A Internalin B; cell inva 98.6 1E-08 3.5E-13 116.2 3.6 166 406-600 44-209 (605)
99 1m9s_A Internalin B; cell inva 98.6 1.3E-08 4.5E-13 115.3 4.4 170 376-576 41-210 (605)
100 1p9a_G Platelet glycoprotein I 98.6 6.1E-10 2.1E-14 114.6 -6.0 200 349-573 7-206 (290)
101 3rfs_A Internalin B, repeat mo 98.6 2.4E-09 8.2E-14 108.8 -2.1 159 427-600 59-217 (272)
102 2xwt_C Thyrotropin receptor; s 98.5 6E-10 2.1E-14 110.8 -9.9 59 321-387 31-89 (239)
103 2o6q_A Variable lymphocyte rec 98.5 5.1E-09 1.8E-13 106.1 -3.6 84 457-546 132-215 (270)
104 2je0_A Acidic leucine-rich nuc 98.5 1.7E-08 5.8E-13 92.5 0.2 37 483-523 41-77 (149)
105 2ell_A Acidic leucine-rich nuc 98.5 8.2E-09 2.8E-13 96.6 -2.5 40 559-599 117-158 (168)
106 2je0_A Acidic leucine-rich nuc 98.4 1.4E-07 4.9E-12 86.2 3.7 109 406-523 18-126 (149)
107 3cvr_A Invasion plasmid antige 98.3 9.6E-08 3.3E-12 107.4 1.2 189 352-583 59-250 (571)
108 1p9a_G Platelet glycoprotein I 98.3 3.4E-08 1.2E-12 101.4 -2.7 204 376-604 8-211 (290)
109 1xeu_A Internalin C; cellular 98.3 3.2E-07 1.1E-11 92.7 4.3 163 407-599 21-183 (263)
110 3m19_A Variable lymphocyte rec 98.3 1.9E-08 6.4E-13 100.8 -5.6 109 457-573 82-190 (251)
111 1xeu_A Internalin C; cellular 98.2 1.8E-07 6.3E-12 94.5 1.1 142 406-573 42-183 (263)
112 2ell_A Acidic leucine-rich nuc 98.2 3.1E-07 1.1E-11 85.8 2.5 84 350-441 47-130 (168)
113 1pgv_A TMD-1, tropomodulin TMD 98.2 1.1E-05 3.8E-10 77.7 12.7 124 448-573 32-168 (197)
114 4ay9_X Follicle-stimulating ho 98.2 4.7E-09 1.6E-13 110.7 -12.8 109 485-602 129-237 (350)
115 1pgv_A TMD-1, tropomodulin TMD 98.2 2.2E-05 7.4E-10 75.6 13.6 125 473-598 30-167 (197)
116 3m19_A Variable lymphocyte rec 98.2 1.2E-07 4.2E-12 94.8 -2.3 178 406-601 15-192 (251)
117 4g8a_A TOLL-like receptor 4; l 98.2 6.3E-09 2.1E-13 117.4 -13.3 253 321-603 328-582 (635)
118 1a9n_A U2A', U2A'; complex (nu 98.1 5E-07 1.7E-11 85.2 -0.2 38 560-598 111-150 (176)
119 1dce_A Protein (RAB geranylger 98.0 6.4E-08 2.2E-12 108.9 -8.3 37 560-598 506-543 (567)
120 3cvr_A Invasion plasmid antige 98.0 1.6E-06 5.4E-11 97.5 3.0 186 321-553 59-246 (571)
121 3sb4_A Hypothetical leucine ri 98.0 7.7E-07 2.6E-11 92.7 -0.0 125 483-629 201-327 (329)
122 3sb4_A Hypothetical leucine ri 98.0 1.7E-07 5.8E-12 97.7 -5.5 275 294-595 26-328 (329)
123 4g8a_A TOLL-like receptor 4; l 98.0 7.9E-07 2.7E-11 100.1 -0.9 203 352-570 52-257 (635)
124 2xot_A Amphoterin-induced prot 97.8 4.9E-07 1.7E-11 95.6 -5.0 83 352-440 39-121 (361)
125 1ds9_A Outer arm dynein; leuci 97.8 1.6E-06 5.4E-11 83.4 -1.7 35 559-594 137-180 (198)
126 4ay9_X Follicle-stimulating ho 97.8 1.7E-08 5.9E-13 106.3 -17.0 102 458-571 154-255 (350)
127 2o6s_A Variable lymphocyte rec 97.8 3.7E-07 1.3E-11 88.4 -6.3 30 560-598 146-175 (208)
128 3e6j_A Variable lymphocyte rec 97.8 9.1E-07 3.1E-11 87.3 -4.0 131 431-573 40-170 (229)
129 1a9n_A U2A', U2A'; complex (nu 97.8 7.7E-06 2.6E-10 77.0 2.2 12 482-493 138-149 (176)
130 2v70_A SLIT-2, SLIT homolog 2 97.7 7.3E-07 2.5E-11 87.5 -6.0 14 560-573 151-164 (220)
131 2o6s_A Variable lymphocyte rec 97.7 1.9E-06 6.3E-11 83.4 -3.3 87 508-600 74-160 (208)
132 1ds9_A Outer arm dynein; leuci 97.6 1E-05 3.6E-10 77.6 1.4 39 483-522 114-152 (198)
133 2v9t_B SLIT homolog 2 protein 97.6 1.7E-06 5.8E-11 84.9 -4.9 132 431-573 32-163 (220)
134 2v70_A SLIT-2, SLIT homolog 2 97.6 1.7E-06 5.6E-11 84.9 -5.3 91 508-604 79-169 (220)
135 3e6j_A Variable lymphocyte rec 97.6 5.2E-06 1.8E-10 81.8 -1.8 11 378-388 40-50 (229)
136 2xot_A Amphoterin-induced prot 97.6 1.3E-06 4.6E-11 92.2 -6.8 176 381-573 21-200 (361)
137 2v9t_B SLIT homolog 2 protein 97.5 6.6E-06 2.3E-10 80.6 -2.0 139 457-605 31-169 (220)
138 1w8a_A SLIT protein; signaling 97.1 1.2E-05 4.2E-10 76.8 -5.5 110 406-523 30-139 (192)
139 2wfh_A SLIT homolog 2 protein 97.1 3.4E-05 1.2E-09 73.9 -2.8 107 406-522 32-138 (193)
140 1dce_A Protein (RAB geranylger 97.0 0.00015 5.2E-09 81.3 1.0 196 321-543 349-567 (567)
141 2wfh_A SLIT homolog 2 protein 96.7 0.00013 4.5E-09 69.7 -2.0 108 457-573 30-137 (193)
142 2o6r_A Variable lymphocyte rec 96.7 0.00013 4.4E-09 68.4 -2.5 109 457-573 27-135 (177)
143 1w8a_A SLIT protein; signaling 96.6 5E-05 1.7E-09 72.5 -5.5 110 457-573 28-137 (192)
144 2o6r_A Variable lymphocyte rec 96.6 0.00023 7.8E-09 66.6 -1.1 63 457-523 75-137 (177)
145 4b8c_D Glucose-repressible alc 96.4 0.00043 1.5E-08 80.0 -0.4 110 480-602 220-329 (727)
146 4b8c_D Glucose-repressible alc 96.2 0.00029 1E-08 81.4 -3.3 112 456-580 222-333 (727)
147 4fdw_A Leucine rich hypothetic 95.8 0.0004 1.4E-08 74.4 -4.5 103 375-493 177-280 (401)
148 3rw6_A Nuclear RNA export fact 95.7 0.02 7E-07 57.5 7.8 13 376-388 168-180 (267)
149 3rw6_A Nuclear RNA export fact 95.7 0.012 3.9E-07 59.3 5.9 43 481-524 167-210 (267)
150 2r9u_A Variable lymphocyte rec 94.3 0.0053 1.8E-07 57.4 -1.2 84 484-573 33-116 (174)
151 3g39_A Variable lymphocyte rec 94.0 0.0055 1.9E-07 57.0 -1.6 85 483-573 29-113 (170)
152 4fdw_A Leucine rich hypothetic 93.9 0.0031 1.1E-07 67.5 -4.2 209 350-598 134-355 (401)
153 3g39_A Variable lymphocyte rec 93.6 0.0074 2.5E-07 56.0 -1.5 39 483-523 77-115 (170)
154 2r9u_A Variable lymphocyte rec 93.4 0.0065 2.2E-07 56.8 -2.3 62 457-522 56-117 (174)
155 4fs7_A Uncharacterized protein 93.1 0.0012 4.1E-08 70.1 -8.9 12 482-493 251-262 (394)
156 2ifg_A High affinity nerve gro 90.8 0.021 7.3E-07 59.0 -2.5 12 512-523 105-116 (347)
157 2ifg_A High affinity nerve gro 90.6 0.029 9.8E-07 58.0 -1.7 85 457-547 30-114 (347)
158 4gt6_A Cell surface protein; l 69.4 0.98 3.3E-05 47.4 0.0 83 427-520 284-367 (394)
159 4gt6_A Cell surface protein; l 52.4 2.6 8.9E-05 44.0 -0.4 124 348-493 261-387 (394)
160 4h09_A Hypothetical leucine ri 39.2 2.8 9.5E-05 43.4 -2.8 59 427-493 282-342 (379)
161 4h09_A Hypothetical leucine ri 36.7 3.2 0.00011 42.9 -2.8 54 535-596 285-341 (379)
162 4fs7_A Uncharacterized protein 29.5 8.5 0.00029 40.0 -1.0 98 321-440 276-375 (394)
163 3rfe_A Platelet glycoprotein I 25.4 15 0.00052 31.8 0.1 36 536-573 31-66 (130)
164 3rfe_A Platelet glycoprotein I 23.7 23 0.00078 30.7 0.9 36 485-522 32-67 (130)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=2.5e-24 Score=243.48 Aligned_cols=297 Identities=17% Similarity=0.310 Sum_probs=185.3
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHH---HHHHHHHhccCCCCccEEEecCCCC--CCHH
Q 041246 294 SPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENV---IINTIVTQNFSLPALTTISLTGAYQ--LTDF 368 (637)
Q Consensus 294 ~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~---l~~il~~~~~~l~~L~~L~Ls~~~~--isd~ 368 (637)
.+++|++++|..++...+..+...| ++|++|+|++|. +++.. +.. ....+++|++|+++++.. +...
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~--~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~ 210 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHC--RKIKTLLMEESS--FSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPK 210 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHC--TTCSEEECTTCE--EECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhC--CCCCEEECcccc--ccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHH
Confidence 4788888888777777777777777 888888888775 32221 222 233677777777776532 3456
Q ss_pred HHHHHHHhCCCCCEEEecCCCCCC-----------------------------------------------hhHHHHHHH
Q 041246 369 GLSKLARSASALQSVNLSQCSLLT-----------------------------------------------NEGINLLVK 401 (637)
Q Consensus 369 ~l~~L~~~~~~L~~L~Ls~c~~ls-----------------------------------------------~~~l~~L~~ 401 (637)
.+..+...|++|++|+|++|.... ...+..+..
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~ 290 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGG
T ss_pred HHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHh
Confidence 666666777777777777652100 111112222
Q ss_pred hhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecC----------CCCC
Q 041246 402 HLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLAN----------CGQL 471 (637)
Q Consensus 402 ~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~----------c~~l 471 (637)
.++ +|++|++++|. ++...+...+..+++|++|++++ .+.+..+..+.. .+++|++|+|++ |..+
T Consensus 291 ~~~-~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~-~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 291 FAA-QIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQ-YCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGG-GCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHH-HCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred hcC-CCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHH-hCCCCCEEEeecCccccccccccCcc
Confidence 333 67777777775 55555555566777777777763 345555555443 367777777774 6677
Q ss_pred CHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEec----cCCCCH----HHHHHHHHhcCCCccEEEc
Q 041246 472 TDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLC----RNNFSD----EALAAFLEVSGDSLTELSL 543 (637)
Q Consensus 472 td~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls----~~~ltd----~~l~~l~~~~~~~L~~L~L 543 (637)
++.++..+...|++|+.|++ +|+.+++.++..+...+++|+.|+|+ ++.+++ .++..+.. .+++|++|+|
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~-~~~~L~~L~L 443 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI-GCKKLRRFAF 443 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH-HCTTCCEEEE
T ss_pred CHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH-hCCCCCEEEE
Confidence 77777776666777777777 33567777777666667777777775 445554 35554433 2466666666
Q ss_pred CCCCC-CCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhh
Q 041246 544 NHVRG-VGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLN 607 (637)
Q Consensus 544 s~c~~-l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~ 607 (637)
+.|.+ +++..+..+...+++|++|+|++|. +++.++..++.+|++|++|+|++|. +++.++.
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 506 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA 506 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH
Confidence 65543 5666666666666666666666665 6666666666666666666666665 5655443
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.4e-24 Score=240.00 Aligned_cols=317 Identities=17% Similarity=0.243 Sum_probs=210.2
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCC-CCCHHHH
Q 041246 292 SGSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAY-QLTDFGL 370 (637)
Q Consensus 292 ~~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~-~isd~~l 370 (637)
.+.+++|++++|..++...+..+...| ++|++|+|++|. +++..... +......+++|++|++++|. .+++..+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~--i~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATC--RNLKELDLRESD--VDDVSGHW-LSHFPDTYTSLVSLNISCLASEVSFSAL 203 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHC--TTCCEEECTTCE--EECCCGGG-GGGSCTTCCCCCEEECTTCCSCCCHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhC--CCCCEEeCcCCc--cCCcchHH-HHHHhhcCCcCcEEEecccCCcCCHHHH
Confidence 367888888888777777777777777 788888887765 22211111 11133466677777777664 4666666
Q ss_pred HHHHHhCCCCCEEEecCCCCCC----------------------------------------------------hhHHHH
Q 041246 371 SKLARSASALQSVNLSQCSLLT----------------------------------------------------NEGINL 398 (637)
Q Consensus 371 ~~L~~~~~~L~~L~Ls~c~~ls----------------------------------------------------~~~l~~ 398 (637)
..+...+++|++|+|++|..++ ...+..
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 6666667777777777652211 111222
Q ss_pred HHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEe--------cCCCC
Q 041246 399 LVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVL--------ANCGQ 470 (637)
Q Consensus 399 L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~L--------s~c~~ 470 (637)
+...++ +|++|+|++|. ++...+...+.++++|++|+++++ +.+..+..+.. .+++|++|+| ..|..
T Consensus 284 ~~~~~~-~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~-~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 284 VYSVCS-RLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLAS-TCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GHHHHT-TCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHH-HCTTCCEEEEECSCTTCSSCSSC
T ss_pred HHHhhC-CCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHH-hCCCCCEEEEecCcccccccCCC
Confidence 222333 67777777775 665555556677788888888775 45555555443 3778888888 34567
Q ss_pred CCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEec--c----CCCC----HHHHHHHHHhcCCCccE
Q 041246 471 LTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLC--R----NNFS----DEALAAFLEVSGDSLTE 540 (637)
Q Consensus 471 ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls--~----~~lt----d~~l~~l~~~~~~~L~~ 540 (637)
+++.++..+...|++|+.|.+. |+.+++.++..++..+++|+.|+|+ + +.++ +.++..++. .+++|++
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~L~~ 436 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE-HCKDLRR 436 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH-HCTTCCE
T ss_pred CCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHh-hCCCccE
Confidence 7777777777777888888554 4677877777777778888888887 3 4566 666666543 3567888
Q ss_pred EEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecCC
Q 041246 541 LSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLP 620 (637)
Q Consensus 541 L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~ 620 (637)
|+|++ .+++.++..+...+++|+.|+|++|. +++.++..++.+|++|+.|+|++|.. ++.++..+ ..
T Consensus 437 L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~---------~~ 503 (594)
T 2p1m_B 437 LSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLAN---------AS 503 (594)
T ss_dssp EECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHT---------GG
T ss_pred EeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHH---------HH
Confidence 88865 67777777777667888888888887 78888887777788888888888864 77665421 12
Q ss_pred CCCCCCeeeccCC
Q 041246 621 LTPALKHIQVLEP 633 (637)
Q Consensus 621 ~lp~L~~L~l~~~ 633 (637)
.+++|+.|++.+.
T Consensus 504 ~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 504 KLETMRSLWMSSC 516 (594)
T ss_dssp GGGGSSEEEEESS
T ss_pred hCCCCCEEeeeCC
Confidence 3456666666543
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.7e-22 Score=228.29 Aligned_cols=297 Identities=18% Similarity=0.205 Sum_probs=232.9
Q ss_pred CCCcEEEEcCCC-CCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCC--------
Q 041246 293 GSPTEIRLNDCS-EINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAY-------- 363 (637)
Q Consensus 293 ~~l~~L~Ls~c~-~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~-------- 363 (637)
..+++|++++|. .++...+..+...| ++|++|+|++|.. +++ +.. .+..+++|++|++.++.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~--~~L~~L~L~~~~~-~~~--l~~----~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRC--PNLKSLKLNRAVP-LEK--LAT----LLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHC--TTCCEEECCTTSC-HHH--HHH----HHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhC--CCCcEEecCCCCc-HHH--HHH----HHhcCCcceEcccccccCccchhhH
Confidence 356777777764 56666677776666 7777777777632 111 222 23355666666544332
Q ss_pred --------------------CCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcH
Q 041246 364 --------------------QLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSM 423 (637)
Q Consensus 364 --------------------~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l 423 (637)
.+.+..+..+...+++|++|+|++|. +++.++..+...++ +|++|++.+| +.+.++
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~-~L~~L~l~~~--~~~~~l 330 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCP-KLQRLWVLDY--IEDAGL 330 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCT-TCCEEEEEGG--GHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCC-CcCEEeCcCc--cCHHHH
Confidence 23333444444567999999999986 99888888887786 9999999998 556666
Q ss_pred HHHHhcCCCCcEEec--------cCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEc---
Q 041246 424 LPALRKLNCLEVLSV--------AGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLS--- 492 (637)
Q Consensus 424 ~~~l~~l~~L~~L~L--------s~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~--- 492 (637)
......+++|++|++ ..+..+++.++..+... +++|++|.+. |..+++.++..+...|++|+.|+++
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~-~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH-CTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh-chhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 667778999999999 34567888888776544 8999999665 6789999999998889999999999
Q ss_pred --CCCCCC----HHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcce
Q 041246 493 --HLDNLT----DATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLS 566 (637)
Q Consensus 493 --~c~~it----d~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~ 566 (637)
+|+.++ +.++..++..+++|+.|+|++ .+++.++..+.. .+++|+.|+|++|. +++.++..++..+++|++
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~-~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT-YAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH-HCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH-hchhccEeeccCCC-CcHHHHHHHHhcCCCcCE
Confidence 678899 888888889999999999987 899998887765 35899999999876 888888888788999999
Q ss_pred EeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcc
Q 041246 567 LDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGH 609 (637)
Q Consensus 567 L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~l 609 (637)
|+|++|. +++.++..++..|++|+.|++++|+. ++.++..+
T Consensus 486 L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l 526 (594)
T 2p1m_B 486 LEIRDCP-FGDKALLANASKLETMRSLWMSSCSV-SFGACKLL 526 (594)
T ss_dssp EEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHH
T ss_pred EECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHH
Confidence 9999999 69999988888899999999999965 88877654
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=9.4e-23 Score=230.52 Aligned_cols=299 Identities=15% Similarity=0.218 Sum_probs=234.9
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCC-eeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCH---H
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKN-LIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTD---F 368 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~n-L~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd---~ 368 (637)
..+++|+|++| .++...+..+...| ++ |++|+|++|.. +++..+..+. .+|++|++|+|++|. +++ .
T Consensus 112 ~~L~~L~L~~~-~i~~~~~~~l~~~~--~~~L~~L~L~~~~~-~~~~~l~~~~----~~~~~L~~L~L~~~~-~~~~~~~ 182 (592)
T 3ogk_B 112 RQLKSVHFRRM-IVSDLDLDRLAKAR--ADDLETLKLDKCSG-FTTDGLLSIV----THCRKIKTLLMEESS-FSEKDGK 182 (592)
T ss_dssp TTCCEEEEESC-BCCHHHHHHHHHHH--GGGCCEEEEESCEE-EEHHHHHHHH----HHCTTCSEEECTTCE-EECCCSH
T ss_pred CCCCeEEeecc-EecHHHHHHHHHhc--cccCcEEECcCCCC-cCHHHHHHHH----hhCCCCCEEECcccc-ccCcchh
Confidence 67899999998 58887777776655 55 99999999874 5666555443 478999999999984 332 3
Q ss_pred HHHHHHHhCCCCCEEEecCCCC--CChhHHHHHHHhhcccceEEeccCCCccc---------------------------
Q 041246 369 GLSKLARSASALQSVNLSQCSL--LTNEGINLLVKHLKSTLRVLYIDHCQNID--------------------------- 419 (637)
Q Consensus 369 ~l~~L~~~~~~L~~L~Ls~c~~--ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~--------------------------- 419 (637)
.+..+...+++|++|+++++.. ++...+..+...++ +|++|++++|....
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHH
Confidence 3667778899999999998632 34677877777786 89999999874211
Q ss_pred --------------------hhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHH
Q 041246 420 --------------------AVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFV 479 (637)
Q Consensus 420 --------------------~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l 479 (637)
...+...+..+++|++|+++++. +++..+..++ ..+++|++|++.+ .+++.++..+
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~-~~~~~L~~L~L~~--~~~~~~l~~~ 337 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLI-QKCPNLEVLETRN--VIGDRGLEVL 337 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHH-TTCTTCCEEEEEG--GGHHHHHHHH
T ss_pred HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHH-HhCcCCCEEeccC--ccCHHHHHHH
Confidence 11122234566788888888866 7777765554 3489999999984 5788888888
Q ss_pred HhcCCCCCEEEEcC----------CCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcC---CC
Q 041246 480 GKKCSRLCALDLSH----------LDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLN---HV 546 (637)
Q Consensus 480 ~~~c~~L~~L~L~~----------c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls---~c 546 (637)
...|++|+.|++++ |+.+++.++..+...|++|++|+++++.+++.++..+.. .+++|++|+|+ .|
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCC
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCC
Confidence 88899999999995 889999999998889999999999999999998887754 35899999998 35
Q ss_pred CCCCH----HHHHHHHhCCCCcceEeeecCCC-CCHHHHHHHHhcCCCcCEEEeecCCCCChhhhh
Q 041246 547 RGVGL----NTALSLAKCSRNLLSLDLSWCRF-IKDEALGFIVDNCSLLRLLKLFGCSQITNVFLN 607 (637)
Q Consensus 547 ~~l~~----~~l~~l~~~~~~L~~L~Ls~c~~-ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~ 607 (637)
..+++ .++..+...+++|++|+|++|.+ +++.++..+...|++|+.|+|++| .+++.++.
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~ 481 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLM 481 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHH
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHH
Confidence 56765 46777778899999999988764 899999999988999999999988 58886654
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=1.1e-20 Score=206.82 Aligned_cols=321 Identities=20% Similarity=0.244 Sum_probs=212.7
Q ss_pred CCCcEEEEcCCCCCCHH---HHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHH
Q 041246 293 GSPTEIRLNDCSEINTD---DFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFG 369 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~---~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~ 369 (637)
+.++.|++++|. ++.. .+...+..+ ++|++|+|+++. +++..+..+........++|++|+|++| .+++.+
T Consensus 28 ~~L~~L~L~~~~-l~~~~~~~l~~~l~~~--~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~ 101 (461)
T 1z7x_W 28 QQCQVVRLDDCG-LTEARCKDISSALRVN--PALAELNLRSNE--LGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAG 101 (461)
T ss_dssp TTCSEEEEESSC-CCHHHHHHHHHHHHTC--TTCCEEECTTCC--CHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGG
T ss_pred CCccEEEccCCC-CCHHHHHHHHHHHHhC--CCcCEEeCCCCc--CChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHH
Confidence 578888888875 5654 344555556 788888888766 5665555444322222226888888886 466544
Q ss_pred HHH---HHHhCCCCCEEEecCCCCCChhHHHHHHHhhc---ccceEEeccCCCccchhc---HHHHHhcCCCCcEEeccC
Q 041246 370 LSK---LARSASALQSVNLSQCSLLTNEGINLLVKHLK---STLRVLYIDHCQNIDAVS---MLPALRKLNCLEVLSVAG 440 (637)
Q Consensus 370 l~~---L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~---~~L~~L~Ls~c~~i~~~~---l~~~l~~l~~L~~L~Ls~ 440 (637)
+.. .+..+++|++|++++| .+++.++..++..+. ++|++|++++| .++..+ +...+..+++|++|++++
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 333 3356778888888886 577777777766432 25888888888 444432 345667788888888888
Q ss_pred CcCCCHHHHHHHHH---HcCCCccEEEecCCCCCCHHHHHH---HHhcCCCCCEEEEcCCCCCCHHHHHHHHh----cCC
Q 041246 441 IETVDDYFVTEIVR---AHCLNMRQLVLANCGQLTDRALKF---VGKKCSRLCALDLSHLDNLTDATVQYLAD----GCR 510 (637)
Q Consensus 441 ~~~l~~~~l~~ll~---~~~~~L~~L~Ls~c~~ltd~~l~~---l~~~c~~L~~L~L~~c~~itd~~l~~L~~----~~~ 510 (637)
+. +.+.++..+.. ...++|++|++++| .+++.++.. ....+++|+.|++++| .+++.++..+.. .++
T Consensus 180 n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 180 ND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp SB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTC
T ss_pred CC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCC
Confidence 54 55555444332 23568889999887 466654333 2335788999999885 788777665553 478
Q ss_pred CCCEEEeccCCCCHHHHHHHHH--hcCCCccEEEcCCCCCCCHHHHHHHHh----CCCCcceEeeecCCCCCHHHHH---
Q 041246 511 SICSLKLCRNNFSDEALAAFLE--VSGDSLTELSLNHVRGVGLNTALSLAK----CSRNLLSLDLSWCRFIKDEALG--- 581 (637)
Q Consensus 511 ~L~~L~Ls~~~ltd~~l~~l~~--~~~~~L~~L~Ls~c~~l~~~~l~~l~~----~~~~L~~L~Ls~c~~ltd~~l~--- 581 (637)
+|++|+|++|.+++.++..+.. ..+++|++|+|+++ .+++.++..+.. ..++|++|+|++|. +++.+..
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 334 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS 334 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH
Confidence 8999999988888877554432 12578899999886 466665555443 33689999998887 7766543
Q ss_pred HHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecC-CCCCCCCeeeccCC
Q 041246 582 FIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGL-PLTPALKHIQVLEP 633 (637)
Q Consensus 582 ~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~-~~lp~L~~L~l~~~ 633 (637)
.....+++|++|++++| .+++.+...+.. ++ ...++|++|++.+-
T Consensus 335 ~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~------~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNN-RLEDAGVRELCQ------GLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHCSSCCEEECCSS-BCHHHHHHHHHH------HHTSTTCCCCEEECTTS
T ss_pred HHHhhCCCccEEEccCC-ccccccHHHHHH------HHcCCCCceEEEECCCC
Confidence 33456889999999888 677765543210 11 12578999988764
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=1.6e-20 Score=205.64 Aligned_cols=321 Identities=16% Similarity=0.167 Sum_probs=211.5
Q ss_pred CCcEEEEcCCCCCCHH---HHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHH
Q 041246 294 SPTEIRLNDCSEINTD---DFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGL 370 (637)
Q Consensus 294 ~l~~L~Ls~c~~l~~~---~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l 370 (637)
.+++|++++|. ++.. .+...+..+ ++|++|+|+++. +++.....+........++|++|+|++| .+++.+.
T Consensus 86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~--~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~ 159 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGAGCGVLSSTLRTL--PTLQELHLSDNL--LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASC 159 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHTTSC--TTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGH
T ss_pred ceeEEEccCCC-CCHHHHHHHHHHHccC--CceeEEECCCCc--CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHH
Confidence 47788888764 5542 344455555 788888888776 5666665555545555677888888876 4555433
Q ss_pred ---HHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhc---ccceEEeccCCCccchhc---HHHHHhcCCCCcEEeccCC
Q 041246 371 ---SKLARSASALQSVNLSQCSLLTNEGINLLVKHLK---STLRVLYIDHCQNIDAVS---MLPALRKLNCLEVLSVAGI 441 (637)
Q Consensus 371 ---~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~---~~L~~L~Ls~c~~i~~~~---l~~~l~~l~~L~~L~Ls~~ 441 (637)
......+++|++|++++| .+++.++..++..+. ++|++|++++| .++..+ +...+..+++|++|+++++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 333455788888888886 577777666665331 37888888887 444432 4555677888888888885
Q ss_pred cCCCHHHHHHHHHH---cCCCccEEEecCCCCCCHHHHHHHH---hcCCCCCEEEEcCCCCCCHHHHHHHHhc----CCC
Q 041246 442 ETVDDYFVTEIVRA---HCLNMRQLVLANCGQLTDRALKFVG---KKCSRLCALDLSHLDNLTDATVQYLADG----CRS 511 (637)
Q Consensus 442 ~~l~~~~l~~ll~~---~~~~L~~L~Ls~c~~ltd~~l~~l~---~~c~~L~~L~L~~c~~itd~~l~~L~~~----~~~ 511 (637)
.+.+.++..+... .+++|++|++++| .+++.++..+. ..+++|+.|+++++ .+++.+...+... .++
T Consensus 238 -~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 238 -KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp -BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCC
T ss_pred -cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCcc
Confidence 4666555444332 3678888888887 67777644433 34788888888884 7777766655543 358
Q ss_pred CCEEEeccCCCCHHHHHHHHH--hcCCCccEEEcCCCCCCCHHHHHHHHh----CCCCcceEeeecCCCCCHHHHHHHH-
Q 041246 512 ICSLKLCRNNFSDEALAAFLE--VSGDSLTELSLNHVRGVGLNTALSLAK----CSRNLLSLDLSWCRFIKDEALGFIV- 584 (637)
Q Consensus 512 L~~L~Ls~~~ltd~~l~~l~~--~~~~~L~~L~Ls~c~~l~~~~l~~l~~----~~~~L~~L~Ls~c~~ltd~~l~~l~- 584 (637)
|+.|+|++|.+++.+...+.. ..+++|++|+|+++ .+++.++..+.. .+++|++|+|++|. +++.++..+.
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~ 392 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAA 392 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHH
Confidence 888888888888765444322 13478888888886 577666655543 25688888888886 8886655544
Q ss_pred --hcCCCcCEEEeecCCCCChhhhhcccccceeeecC-CCCCCCCeeeccCCC
Q 041246 585 --DNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGL-PLTPALKHIQVLEPQ 634 (637)
Q Consensus 585 --~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~-~~lp~L~~L~l~~~~ 634 (637)
..+++|++|++++| .+++.++..+.. .+ .....|+.|.+.+..
T Consensus 393 ~l~~~~~L~~L~l~~N-~i~~~~~~~l~~------~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 393 TLLANHSLRELDLSNN-CLGDAGILQLVE------SVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHCCCCCEEECCSS-SCCHHHHHHHHH------HHTSTTCCCCEEECTTCC
T ss_pred HHHhCCCccEEECCCC-CCCHHHHHHHHH------HhccCCcchhheeecccc
Confidence 35888888888888 577776654221 01 123467777766543
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.2e-19 Score=190.20 Aligned_cols=308 Identities=19% Similarity=0.286 Sum_probs=181.6
Q ss_pred CCCCCCHHHHHHHHHH-----HhhCCCCCHHHHHHhhCC-CCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCC
Q 041246 260 SLELVPDFLRHKLSQI-----VRKKRKMNARFLELLASG-SPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGR 333 (637)
Q Consensus 260 ~L~~Lp~~l~~~l~~~-----ls~~~~l~~~~l~ll~~~-~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~ 333 (637)
.+..+|+++..++... +.....+..........+ .++.++++++ .+.+..+..+.. ++++.|+++++.
T Consensus 8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~-~~~~~~~~~~~~----~~l~~L~l~~n~- 81 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK-NLHPDVTGRLLS----QGVIAFRCPRSF- 81 (336)
T ss_dssp CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC-BCCHHHHHHHHH----TTCSEEECTTCE-
T ss_pred ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc-cCCHHHHHhhhh----ccceEEEcCCcc-
Confidence 3455666665554431 122333444444443322 3566777664 344444444433 566666666543
Q ss_pred CCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEecc
Q 041246 334 ILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYID 413 (637)
Q Consensus 334 ~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls 413 (637)
++.... ....+++|++|+|++|. +++.++..++..+++|++|++++| .+++...
T Consensus 82 -l~~~~~------~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~----------------- 135 (336)
T 2ast_B 82 -MDQPLA------EHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIV----------------- 135 (336)
T ss_dssp -ECSCCC------SCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHH-----------------
T ss_pred -ccccch------hhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHH-----------------
Confidence 111100 12245556666665543 455445545555555555555554 3443333
Q ss_pred CCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCC-CCCEEEEc
Q 041246 414 HCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCS-RLCALDLS 492 (637)
Q Consensus 414 ~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~-~L~~L~L~ 492 (637)
..+..+++|++|+++++..+++..+..++.. +++|++|++++|..+++.++..+...++ +|+.|+++
T Consensus 136 -----------~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 136 -----------NTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp -----------HHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred -----------HHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 3344566666777666655666555554443 6777777777775677766666666677 78888887
Q ss_pred CCC-CCCHHHHHHHHhcCCCCCEEEeccCC-CCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeee
Q 041246 493 HLD-NLTDATVQYLADGCRSICSLKLCRNN-FSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLS 570 (637)
Q Consensus 493 ~c~-~itd~~l~~L~~~~~~L~~L~Ls~~~-ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls 570 (637)
+|. .+++..+..+...+++|+.|+|++|. +++.++..+. ..++|++|+|++|..+++..+..+ ..+++|+.|+|+
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~ 280 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--QLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVF 280 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECT
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh--CCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEecc
Confidence 765 57776776666778888888888777 6766665543 337888888888877766555333 458999999999
Q ss_pred cCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhccccccee-eecCC
Q 041246 571 WCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQ-IIGLP 620 (637)
Q Consensus 571 ~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~-i~g~~ 620 (637)
+| +++.++..+...++.|+ + +|..++...-....+.... ++|..
T Consensus 281 ~~--i~~~~~~~l~~~l~~L~---l-~~n~l~~~~~~~~~~~~~~~i~g~~ 325 (336)
T 2ast_B 281 GI--VPDGTLQLLKEALPHLQ---I-NCSHFTTIARPTIGNKKNQEIWGIK 325 (336)
T ss_dssp TS--SCTTCHHHHHHHSTTSE---E-SCCCSCCTTCSSCSSTTCCCBTTBC
T ss_pred Cc--cCHHHHHHHHhhCcceE---E-ecccCccccCCcccccccceeechh
Confidence 98 88888888876566555 5 4556766544332222222 55543
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=1.9e-17 Score=177.48 Aligned_cols=270 Identities=16% Similarity=0.139 Sum_probs=147.8
Q ss_pred HHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCC--CCC---HHHHHHH---HHhCCCCCEEE
Q 041246 313 RIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAY--QLT---DFGLSKL---ARSASALQSVN 384 (637)
Q Consensus 313 ~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~--~is---d~~l~~L---~~~~~~L~~L~ 384 (637)
..+..+ ++|++|+|+++. +++.....+.. .+..+++|++|+|++|. .++ +.++..+ +..+++|++|+
T Consensus 26 ~~l~~~--~~L~~L~L~~n~--i~~~~~~~l~~-~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 26 AVLLED--DSVKEIVLSGNT--IGTEAARWLSE-NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHHHC--SCCCEEECTTSE--ECHHHHHHHHH-TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHhcC--CCccEEECCCCC--CCHHHHHHHHH-HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 344455 778888887765 55555443322 45567788888887762 222 2344333 24567788888
Q ss_pred ecCCCCCChhHHHHHH---HhhcccceEEeccCCCccchhc---HHHHHhcC---------CCCcEEeccCCcCCCHHHH
Q 041246 385 LSQCSLLTNEGINLLV---KHLKSTLRVLYIDHCQNIDAVS---MLPALRKL---------NCLEVLSVAGIETVDDYFV 449 (637)
Q Consensus 385 Ls~c~~ls~~~l~~L~---~~~~~~L~~L~Ls~c~~i~~~~---l~~~l~~l---------~~L~~L~Ls~~~~l~~~~l 449 (637)
|++| .++..++..++ ..++ +|++|+|++|. ++..+ +...+..+ ++|++|+++++. +++..+
T Consensus 101 Ls~n-~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 176 (386)
T 2ca6_A 101 LSDN-AFGPTAQEPLIDFLSKHT-PLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSM 176 (386)
T ss_dssp CCSC-CCCTTTHHHHHHHHHHCT-TCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGH
T ss_pred CCCC-cCCHHHHHHHHHHHHhCC-CCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHH
Confidence 8775 56655444332 2233 67777777763 33221 22233334 677777777643 443332
Q ss_pred H---HHHHHcCCCccEEEecCCCCCCHHHHHHHHh----cCCCCCEEEEcCCCCCCHHHHHHH---HhcCCCCCEEEecc
Q 041246 450 T---EIVRAHCLNMRQLVLANCGQLTDRALKFVGK----KCSRLCALDLSHLDNLTDATVQYL---ADGCRSICSLKLCR 519 (637)
Q Consensus 450 ~---~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~----~c~~L~~L~L~~c~~itd~~l~~L---~~~~~~L~~L~Ls~ 519 (637)
. ..+. .+++|++|+|++| .+++.++..+.. .+++|+.|+|++| .+++.+...+ ...+++|+.|+|++
T Consensus 177 ~~l~~~l~-~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 177 KEWAKTFQ-SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHHHHH-HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHH-hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 2 2222 2567777777766 466665444332 4667777777764 5665443333 34566777777777
Q ss_pred CCCCHHHHHHHHHh----cCCCccEEEcCCCCCCCHHHHHH----HHhCCCCcceEeeecCCCCCHHH--HHHHHhcCCC
Q 041246 520 NNFSDEALAAFLEV----SGDSLTELSLNHVRGVGLNTALS----LAKCSRNLLSLDLSWCRFIKDEA--LGFIVDNCSL 589 (637)
Q Consensus 520 ~~ltd~~l~~l~~~----~~~~L~~L~Ls~c~~l~~~~l~~----l~~~~~~L~~L~Ls~c~~ltd~~--l~~l~~~cp~ 589 (637)
|.+++.+...+... .+++|++|+|++|. ++..++.. +...+++|++|+|++|. +++.+ +..+...+++
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFST 331 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhh
Confidence 77776655544332 14666666666643 44432221 22345666666666665 55444 4555555555
Q ss_pred cCEEEee
Q 041246 590 LRLLKLF 596 (637)
Q Consensus 590 L~~L~L~ 596 (637)
++.+++.
T Consensus 332 ~~~~~l~ 338 (386)
T 2ca6_A 332 RGRGELD 338 (386)
T ss_dssp HTCCEEC
T ss_pred cCcchhh
Confidence 5544443
No 9
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2.4e-17 Score=172.67 Aligned_cols=279 Identities=20% Similarity=0.226 Sum_probs=207.7
Q ss_pred CCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEE
Q 041246 304 SEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSV 383 (637)
Q Consensus 304 ~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L 383 (637)
..+.++-+..++... ...++..+.. +.-.+ .. ....-..++.|+++++ .+.+..+..+.. ++|+.|
T Consensus 10 ~~LP~eil~~If~~L-----~~~d~~~~~~-vc~~W-~~----~~~~~~~~~~l~l~~~-~~~~~~~~~~~~--~~l~~L 75 (336)
T 2ast_B 10 DSLPDELLLGIFSCL-----CLPELLKVSG-VCKRW-YR----LASDESLWQTLDLTGK-NLHPDVTGRLLS--QGVIAF 75 (336)
T ss_dssp SSSCHHHHHHHHTTS-----CHHHHHHTTS-SCHHH-HH----HHTCSTTSSEEECTTC-BCCHHHHHHHHH--TTCSEE
T ss_pred hhCCHHHHHHHHHhC-----CHHHHHHHHH-HHHHH-HH----HhcCchhheeeccccc-cCCHHHHHhhhh--ccceEE
Confidence 456677777777654 1112222321 22111 11 2223445899999985 466655555433 789999
Q ss_pred EecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEE
Q 041246 384 NLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQL 463 (637)
Q Consensus 384 ~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L 463 (637)
+++++ .++..... +. .++ +|++|++++|. ++...+...+..+++|++|+++++ .+++.....+ ..+++|++|
T Consensus 76 ~l~~n-~l~~~~~~-~~-~~~-~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l--~~~~~L~~L 147 (336)
T 2ast_B 76 RCPRS-FMDQPLAE-HF-SPF-RVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTL--AKNSNLVRL 147 (336)
T ss_dssp ECTTC-EECSCCCS-CC-CCB-CCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHH--TTCTTCSEE
T ss_pred EcCCc-cccccchh-hc-cCC-CCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHH--hcCCCCCEE
Confidence 99986 33322111 11 243 89999999994 666556778899999999999997 4776665544 338999999
Q ss_pred EecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCC-CCCEEEeccC--CCCHHHHHHHHHhcCCCccE
Q 041246 464 VLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCR-SICSLKLCRN--NFSDEALAAFLEVSGDSLTE 540 (637)
Q Consensus 464 ~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~-~L~~L~Ls~~--~ltd~~l~~l~~~~~~~L~~ 540 (637)
+|++|..+++.++..+...|++|+.|++++|..+++.++..+...++ +|++|+|++| .+++.++...+.. +++|++
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-CCCCCE
Confidence 99999789998888877889999999999977899988888888899 9999999999 7888888776543 689999
Q ss_pred EEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcc
Q 041246 541 LSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGH 609 (637)
Q Consensus 541 L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~l 609 (637)
|+|++|..+++..+..+ ..+++|++|+|++|..+++.++..+ ..|++|+.|++++| +++.++..+
T Consensus 227 L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~--i~~~~~~~l 291 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI--VPDGTLQLL 291 (336)
T ss_dssp EECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS--SCTTCHHHH
T ss_pred EeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc--cCHHHHHHH
Confidence 99999987877655544 4679999999999987888877555 46999999999999 888776654
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=7.6e-17 Score=172.85 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=189.4
Q ss_pred CChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHH---HhCCCCCEEEecCC--CCCCh---hHHHHHHH---hh
Q 041246 335 LTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLA---RSASALQSVNLSQC--SLLTN---EGINLLVK---HL 403 (637)
Q Consensus 335 l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~---~~~~~L~~L~Ls~c--~~ls~---~~l~~L~~---~~ 403 (637)
+++..+..+.. .+..+++|++|+|++| .+++.+...+. ..+++|++|+|++| ..++. .++..++. .+
T Consensus 16 l~~~~~~~l~~-~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 16 ITTEDEKSVFA-VLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp CCSHHHHTTSH-HHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHH-HHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 44555554433 3457899999999997 67887776654 36899999999997 33433 35555544 34
Q ss_pred cccceEEeccCCCccchh---cHHHHHhcCCCCcEEeccCCcCCCHHHHHHH---HHHcC---------CCccEEEecCC
Q 041246 404 KSTLRVLYIDHCQNIDAV---SMLPALRKLNCLEVLSVAGIETVDDYFVTEI---VRAHC---------LNMRQLVLANC 468 (637)
Q Consensus 404 ~~~L~~L~Ls~c~~i~~~---~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l---l~~~~---------~~L~~L~Ls~c 468 (637)
+ +|++|+|++| .++.. .+...+..+++|++|+++++. +++.....+ +.. + ++|++|+|++|
T Consensus 94 ~-~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~-l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 94 P-KLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQE-LAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp T-TCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHH-HHHHHHHHTCCCCCEEECCSS
T ss_pred C-cccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHH-HhhhhhcccCCCCcEEECCCC
Confidence 3 8999999998 44443 245577899999999999964 554433322 221 3 89999999987
Q ss_pred CCCCHHHHHHHH---hcCCCCCEEEEcCCCCCCHHHHHHHHh----cCCCCCEEEeccCCCCHHHHHHHHH--hcCCCcc
Q 041246 469 GQLTDRALKFVG---KKCSRLCALDLSHLDNLTDATVQYLAD----GCRSICSLKLCRNNFSDEALAAFLE--VSGDSLT 539 (637)
Q Consensus 469 ~~ltd~~l~~l~---~~c~~L~~L~L~~c~~itd~~l~~L~~----~~~~L~~L~Ls~~~ltd~~l~~l~~--~~~~~L~ 539 (637)
.+++.++..++ ..+++|+.|++++| .+++.++..++. .+++|+.|+|++|.+++.+...+.. ..+++|+
T Consensus 170 -~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 170 -RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp -CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred -CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 58766666433 46899999999996 899887665544 7899999999999999877665542 3458999
Q ss_pred EEEcCCCCCCCHHHHHHHHh-----CCCCcceEeeecCCCCCHHHHHHHH----hcCCCcCEEEeecCCCCChh
Q 041246 540 ELSLNHVRGVGLNTALSLAK-----CSRNLLSLDLSWCRFIKDEALGFIV----DNCSLLRLLKLFGCSQITNV 604 (637)
Q Consensus 540 ~L~Ls~c~~l~~~~l~~l~~-----~~~~L~~L~Ls~c~~ltd~~l~~l~----~~cp~L~~L~L~~C~~ltd~ 604 (637)
+|+|++|. +++.+...+.. .+++|++|+|++|. +++.++..+. .++++|++|++++|. ++..
T Consensus 248 ~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~ 318 (386)
T 2ca6_A 248 ELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEE 318 (386)
T ss_dssp EEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTT
T ss_pred EEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcc
Confidence 99999975 77765554432 28999999999998 9986554443 558999999999995 4443
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.64 E-value=1.4e-15 Score=160.13 Aligned_cols=277 Identities=18% Similarity=0.145 Sum_probs=181.2
Q ss_pred CCCcEEEEcCCCCCCH-HHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHH
Q 041246 293 GSPTEIRLNDCSEINT-DDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLS 371 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~-~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~ 371 (637)
..+++|++++|. ++. .. +..+ ++|++|+|+++. +++- . .+..+++|++|+++++. +++...
T Consensus 66 ~~L~~L~l~~n~-i~~~~~----~~~l--~~L~~L~L~~n~--i~~~--~-----~~~~l~~L~~L~l~~n~-i~~~~~- 127 (347)
T 4fmz_A 66 TNLEYLNLNGNQ-ITDISP----LSNL--VKLTNLYIGTNK--ITDI--S-----ALQNLTNLRELYLNEDN-ISDISP- 127 (347)
T ss_dssp TTCCEEECCSSC-CCCCGG----GTTC--TTCCEEECCSSC--CCCC--G-----GGTTCTTCSEEECTTSC-CCCCGG-
T ss_pred CCccEEEccCCc-cccchh----hhcC--CcCCEEEccCCc--ccCc--h-----HHcCCCcCCEEECcCCc-ccCchh-
Confidence 567788888763 322 21 4444 788888888775 3321 1 34578888888888764 322111
Q ss_pred HHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHH
Q 041246 372 KLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTE 451 (637)
Q Consensus 372 ~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ 451 (637)
...+++|++|++++|..++.... + ..++ +|+.|++++|...... .+..+++|++|+++++.......
T Consensus 128 --~~~l~~L~~L~l~~n~~~~~~~~--~-~~l~-~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~--- 194 (347)
T 4fmz_A 128 --LANLTKMYSLNLGANHNLSDLSP--L-SNMT-GLNYLTVTESKVKDVT----PIANLTDLYSLSLNYNQIEDISP--- 194 (347)
T ss_dssp --GTTCTTCCEEECTTCTTCCCCGG--G-TTCT-TCCEEECCSSCCCCCG----GGGGCTTCSEEECTTSCCCCCGG---
T ss_pred --hccCCceeEEECCCCCCcccccc--h-hhCC-CCcEEEecCCCcCCch----hhccCCCCCEEEccCCccccccc---
Confidence 35678888888888755443221 2 2243 7888888887432221 16688888888888864222111
Q ss_pred HHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHH
Q 041246 452 IVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFL 531 (637)
Q Consensus 452 ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~ 531 (637)
+ ..+++|+.|++++|. +++... ...+++|+.|++++| .++.... ...+++|+.|++++|.+++. ..+
T Consensus 195 -~-~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~~- 261 (347)
T 4fmz_A 195 -L-ASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQISDI--NAV- 261 (347)
T ss_dssp -G-GGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCC--GGG-
T ss_pred -c-cCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCccCCC--hhH-
Confidence 1 347888888888864 443322 345889999999986 5554322 45789999999999988763 222
Q ss_pred HhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccc
Q 041246 532 EVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSN 611 (637)
Q Consensus 532 ~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~ 611 (637)
...++|++|++++|. ++.. .....+++|+.|++++|. +++.....+ ..+++|+.|++++|. +++...
T Consensus 262 -~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~----- 328 (347)
T 4fmz_A 262 -KDLTKLKMLNVGSNQ-ISDI---SVLNNLSQLNSLFLNNNQ-LGNEDMEVI-GGLTNLTTLFLSQNH-ITDIRP----- 328 (347)
T ss_dssp -TTCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCGGGHHHH-HTCTTCSEEECCSSS-CCCCGG-----
T ss_pred -hcCCCcCEEEccCCc-cCCC---hhhcCCCCCCEEECcCCc-CCCcChhHh-hccccCCEEEccCCc-cccccC-----
Confidence 235899999999874 3321 234578999999999997 776666555 479999999999996 544311
Q ss_pred cceeeecCCCCCCCCeeeccCC
Q 041246 612 SMVQIIGLPLTPALKHIQVLEP 633 (637)
Q Consensus 612 ~~l~i~g~~~lp~L~~L~l~~~ 633 (637)
...+++|+.|++.+-
T Consensus 329 -------~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 329 -------LASLSKMDSADFANQ 343 (347)
T ss_dssp -------GGGCTTCSEESSSCC
T ss_pred -------hhhhhccceeehhhh
Confidence 235688999988764
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=2.1e-15 Score=158.73 Aligned_cols=278 Identities=19% Similarity=0.147 Sum_probs=195.6
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..+++|+++++.--.... +..+ ++|++|+|+++. +++-. .+..+++|++|+++++. +++. ..
T Consensus 44 ~~L~~L~l~~~~i~~~~~----~~~~--~~L~~L~l~~n~--i~~~~-------~~~~l~~L~~L~L~~n~-i~~~--~~ 105 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG----IEYL--TNLEYLNLNGNQ--ITDIS-------PLSNLVKLTNLYIGTNK-ITDI--SA 105 (347)
T ss_dssp TTCSEEECCSSCCCCCTT----GGGC--TTCCEEECCSSC--CCCCG-------GGTTCTTCCEEECCSSC-CCCC--GG
T ss_pred ccccEEEEeCCccccchh----hhhc--CCccEEEccCCc--cccch-------hhhcCCcCCEEEccCCc-ccCc--hH
Confidence 578899999875332222 3445 999999999986 33211 14589999999999974 4432 22
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEI 452 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l 452 (637)
+..+++|++|++++|. ++.... ...++ +|+.|++++|..+... ..+..+++|++|+++++.......
T Consensus 106 -~~~l~~L~~L~l~~n~-i~~~~~---~~~l~-~L~~L~l~~n~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~---- 172 (347)
T 4fmz_A 106 -LQNLTNLRELYLNEDN-ISDISP---LANLT-KMYSLNLGANHNLSDL---SPLSNMTGLNYLTVTESKVKDVTP---- 172 (347)
T ss_dssp -GTTCTTCSEEECTTSC-CCCCGG---GTTCT-TCCEEECTTCTTCCCC---GGGTTCTTCCEEECCSSCCCCCGG----
T ss_pred -HcCCCcCCEEECcCCc-ccCchh---hccCC-ceeEEECCCCCCcccc---cchhhCCCCcEEEecCCCcCCchh----
Confidence 4678999999999974 443222 23344 8999999999766543 237799999999999964332222
Q ss_pred HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHH
Q 041246 453 VRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLE 532 (637)
Q Consensus 453 l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~ 532 (637)
+ ..+++|++|++++|. +++... ...+++|+.|+++++ .++.... ...+++|+.|++++|.+++... +
T Consensus 173 ~-~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~-- 239 (347)
T 4fmz_A 173 I-ANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNNKITDLSP--L-- 239 (347)
T ss_dssp G-GGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSCCCCCGG--G--
T ss_pred h-ccCCCCCEEEccCCc-cccccc---ccCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCCccCCCcc--h--
Confidence 2 348999999999984 543222 345899999999995 5654322 4678999999999999876432 2
Q ss_pred hcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhccccc
Q 041246 533 VSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNS 612 (637)
Q Consensus 533 ~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~ 612 (637)
...++|++|+|+++.- +.. .....+++|++|++++|. +++. .....+++|+.|++++| .++......
T Consensus 240 ~~l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~---- 306 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQI-SDI---NAVKDLTKLKMLNVGSNQ-ISDI---SVLNNLSQLNSLFLNNN-QLGNEDMEV---- 306 (347)
T ss_dssp TTCTTCCEEECCSSCC-CCC---GGGTTCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-CCCGGGHHH----
T ss_pred hcCCCCCEEECCCCcc-CCC---hhHhcCCCcCEEEccCCc-cCCC---hhhcCCCCCCEEECcCC-cCCCcChhH----
Confidence 3458999999998753 321 234578999999999997 6653 23467999999999999 466554332
Q ss_pred ceeeecCCCCCCCCeeeccCC
Q 041246 613 MVQIIGLPLTPALKHIQVLEP 633 (637)
Q Consensus 613 ~l~i~g~~~lp~L~~L~l~~~ 633 (637)
...+++|+.|++.+-
T Consensus 307 ------l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 307 ------IGGLTNLTTLFLSQN 321 (347)
T ss_dssp ------HHTCTTCSEEECCSS
T ss_pred ------hhccccCCEEEccCC
Confidence 224577888877653
No 13
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=2.5e-13 Score=144.35 Aligned_cols=244 Identities=20% Similarity=0.181 Sum_probs=107.4
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCC-CccEEEecCCCCCCHHHH---HHHHHh-CCCCCEEEecCCCCCChhH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLP-ALTTISLTGAYQLTDFGL---SKLARS-ASALQSVNLSQCSLLTNEG 395 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~-~L~~L~Ls~~~~isd~~l---~~L~~~-~~~L~~L~Ls~c~~ls~~~ 395 (637)
++|++|+|+++. +++.....+.. .+..++ +|++|+|++| .+++.+. ..+... +++|++|+|++| .+++.+
T Consensus 22 ~~L~~L~Ls~n~--l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~ 96 (362)
T 3goz_A 22 HGVTSLDLSLNN--LYSISTVELIQ-AFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKS 96 (362)
T ss_dssp TTCCEEECTTSC--GGGSCHHHHHH-HHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred CCceEEEccCCC--CChHHHHHHHH-HHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHH
Confidence 446677766665 34333322222 233555 6666666665 3333222 222222 266666666665 454443
Q ss_pred HHHHHHh---hcccceEEeccCCCccchhcH---HHHHhc-CCCCcEEeccCCcCCCH---HHHHHHHHHcCCCccEEEe
Q 041246 396 INLLVKH---LKSTLRVLYIDHCQNIDAVSM---LPALRK-LNCLEVLSVAGIETVDD---YFVTEIVRAHCLNMRQLVL 465 (637)
Q Consensus 396 l~~L~~~---~~~~L~~L~Ls~c~~i~~~~l---~~~l~~-l~~L~~L~Ls~~~~l~~---~~l~~ll~~~~~~L~~L~L 465 (637)
...++.. ++++|+.|++++|. ++..+. ...+.. .++|++|+++++ .+.+ ..+...+....++|++|+|
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeee
Confidence 3333332 21256666666663 333222 122333 246666666653 2222 2222222221225666666
Q ss_pred cCCCCCCHHHHHH---HHhcC-CCCCEEEEcCCCCCCHHHHHHHH----hcCCCCCEEEeccCCCCHHHHHHHHH--hcC
Q 041246 466 ANCGQLTDRALKF---VGKKC-SRLCALDLSHLDNLTDATVQYLA----DGCRSICSLKLCRNNFSDEALAAFLE--VSG 535 (637)
Q Consensus 466 s~c~~ltd~~l~~---l~~~c-~~L~~L~L~~c~~itd~~l~~L~----~~~~~L~~L~Ls~~~ltd~~l~~l~~--~~~ 535 (637)
++| .+++.+... ....+ ++|+.|+|++| .+++.+...+. ...++|+.|+|++|.+++.+...+.. ...
T Consensus 175 s~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 175 RGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp TTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred cCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 655 343332221 22223 35666666653 44443222221 12345666666666555543333221 122
Q ss_pred CCccEEEcCCCC--CCCHHHHHHHHh---CCCCcceEeeecCC
Q 041246 536 DSLTELSLNHVR--GVGLNTALSLAK---CSRNLLSLDLSWCR 573 (637)
Q Consensus 536 ~~L~~L~Ls~c~--~l~~~~l~~l~~---~~~~L~~L~Ls~c~ 573 (637)
++|+.|+|++|. .++...+..+.. .+++|+.|++++|.
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 455555555442 344443333322 23344455555554
No 14
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=6.3e-13 Score=141.19 Aligned_cols=256 Identities=13% Similarity=0.122 Sum_probs=175.4
Q ss_pred HHHHhhCC-CCcEEEEcCCC--CCCHHHHHHHHhhCCCC-CeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecC
Q 041246 286 FLELLASG-SPTEIRLNDCS--EINTDDFTRIFGACDKK-NLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTG 361 (637)
Q Consensus 286 ~l~ll~~~-~l~~L~Ls~c~--~l~~~~l~~l~~~c~~~-nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~ 361 (637)
....+... .+++|++++|. ......+...+..+ + +|++|+|+++. +++.....+...+...+++|++|+|++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANT--PASVTSLNLSGNS--LGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTC--CTTCCEEECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhC--CCceeEEECcCCC--CCHHHHHHHHHHHhccCCCccEEECcC
Confidence 34444444 49999999984 23334555666665 6 89999999986 555544444332333349999999999
Q ss_pred CCCCCH---HHHHHHHHhC-CCCCEEEecCCCCCChhHHHHHHHhh---cccceEEeccCCCccchhc---HHHHHhcCC
Q 041246 362 AYQLTD---FGLSKLARSA-SALQSVNLSQCSLLTNEGINLLVKHL---KSTLRVLYIDHCQNIDAVS---MLPALRKLN 431 (637)
Q Consensus 362 ~~~isd---~~l~~L~~~~-~~L~~L~Ls~c~~ls~~~l~~L~~~~---~~~L~~L~Ls~c~~i~~~~---l~~~l~~l~ 431 (637)
|. +++ ..+...+..+ ++|++|++++| .+++.+...++... +++|++|++++| .+++.+ +...+..++
T Consensus 90 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 90 NF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIP 166 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSC
T ss_pred Cc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCC
Confidence 85 443 3444444555 89999999997 67777777666542 348999999998 555433 344556666
Q ss_pred -CCcEEeccCCc--CCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHH----HHhcCCCCCEEEEcCCCCCCHHH---
Q 041246 432 -CLEVLSVAGIE--TVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKF----VGKKCSRLCALDLSHLDNLTDAT--- 501 (637)
Q Consensus 432 -~L~~L~Ls~~~--~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~----l~~~c~~L~~L~L~~c~~itd~~--- 501 (637)
+|++|+++++. ......+...+....++|++|+|++| .+++.+... +...+++|+.|+|++| .+++.+
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~ 244 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLEN 244 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHH
Confidence 99999999963 22334444445442259999999987 477644433 3333569999999995 777644
Q ss_pred HHHHHhcCCCCCEEEeccCC---CCHHHHHHHHHh--cCCCccEEEcCCCCCCCH
Q 041246 502 VQYLADGCRSICSLKLCRNN---FSDEALAAFLEV--SGDSLTELSLNHVRGVGL 551 (637)
Q Consensus 502 l~~L~~~~~~L~~L~Ls~~~---ltd~~l~~l~~~--~~~~L~~L~Ls~c~~l~~ 551 (637)
+..+...+++|+.|+|++|. +++.++..+... ..++|+.|+|+++. +.+
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~ 298 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHP 298 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCG
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCC
Confidence 44445678899999999987 888877776542 23678899999864 443
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.50 E-value=5.8e-16 Score=169.11 Aligned_cols=130 Identities=20% Similarity=0.109 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCC
Q 041246 484 SRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRN 563 (637)
Q Consensus 484 ~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~ 563 (637)
++|+.|+++++ .++... ......+++|+.|+|++|.+++.....+ ...++|++|+|+++. ++... ......+++
T Consensus 275 ~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~ 348 (455)
T 3v47_A 275 SGVKTCDLSKS-KIFALL-KSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQNF-LGSID-SRMFENLDK 348 (455)
T ss_dssp SCCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSC-CCEEC-GGGGTTCTT
T ss_pred cCceEEEecCc-cccccc-hhhcccCCCCCEEECCCCcccccChhHh--cCcccCCEEECCCCc-cCCcC-hhHhcCccc
Confidence 45666666663 443221 1122456777777777777664322122 123677888887754 22110 112345677
Q ss_pred cceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 564 LLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 564 L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
|++|+|++|. ++...... +..+++|++|+|++| .++..... ....+++|+.|++.+
T Consensus 349 L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~----------~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 349 LEVLDLSYNH-IRALGDQS-FLGLPNLKELALDTN-QLKSVPDG----------IFDRLTSLQKIWLHT 404 (455)
T ss_dssp CCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCTT----------TTTTCTTCCEEECCS
T ss_pred CCEEECCCCc-ccccChhh-ccccccccEEECCCC-ccccCCHh----------HhccCCcccEEEccC
Confidence 8888888776 54332222 245778888888776 34432111 124567888887765
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.49 E-value=5.1e-14 Score=154.78 Aligned_cols=164 Identities=24% Similarity=0.264 Sum_probs=75.4
Q ss_pred cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSR 485 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~ 485 (637)
+|+.|++++|. +... ..+..+++|++|+++++....... + ..+++|++|++++|. +++. ..+ ..+++
T Consensus 178 ~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~l~~n~l~~~~~----~-~~l~~L~~L~l~~n~-l~~~--~~l-~~l~~ 244 (466)
T 1o6v_A 178 TLERLDISSNK-VSDI---SVLAKLTNLESLIATNNQISDITP----L-GILTNLDELSLNGNQ-LKDI--GTL-ASLTN 244 (466)
T ss_dssp TCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCCCGG----G-GGCTTCCEEECCSSC-CCCC--GGG-GGCTT
T ss_pred CCCEEECcCCc-CCCC---hhhccCCCCCEEEecCCccccccc----c-cccCCCCEEECCCCC-cccc--hhh-hcCCC
Confidence 56666666553 2221 124456666666666542211111 1 225566666666553 3321 112 23556
Q ss_pred CCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcc
Q 041246 486 LCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLL 565 (637)
Q Consensus 486 L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~ 565 (637)
|+.|++++| .++.... ...+++|+.|++++|.++.... + ..+++|+.|+|+++.-.... . ...+++|+
T Consensus 245 L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~ 312 (466)
T 1o6v_A 245 LTDLDLANN-QISNLAP---LSGLTKLTELKLGANQISNISP--L--AGLTALTNLELNENQLEDIS---P-ISNLKNLT 312 (466)
T ss_dssp CSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSCCCCCGG--G--TTCTTCSEEECCSSCCSCCG---G-GGGCTTCS
T ss_pred CCEEECCCC-ccccchh---hhcCCCCCEEECCCCccCcccc--c--cCCCccCeEEcCCCcccCch---h-hcCCCCCC
Confidence 666666664 3332111 2345566666666655543211 1 12355666666554321111 0 23455566
Q ss_pred eEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 566 SLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 566 ~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
.|+|++|. +++... ...+++|+.|++++|
T Consensus 313 ~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 313 YLTLYFNN-ISDISP---VSSLTKLQRLFFYNN 341 (466)
T ss_dssp EEECCSSC-CSCCGG---GGGCTTCCEEECCSS
T ss_pred EEECcCCc-CCCchh---hccCccCCEeECCCC
Confidence 66666554 333221 234555666666555
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.45 E-value=3.6e-13 Score=147.99 Aligned_cols=253 Identities=20% Similarity=0.214 Sum_probs=136.5
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|++++|.--.... +..+ ++|++|+|+++. +.+- . .+..+++|++|++.+.. ... ..
T Consensus 112 ~~L~~L~L~~n~l~~~~~----~~~l--~~L~~L~l~~n~--l~~~--~-----~~~~l~~L~~L~l~~~~--~~~--~~ 172 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP----LKNL--TNLNRLELSSNT--ISDI--S-----ALSGLTSLQQLSFGNQV--TDL--KP 172 (466)
T ss_dssp TTCCEEECCSSCCCCCGG----GTTC--TTCSEEEEEEEE--ECCC--G-----GGTTCTTCSEEEEEESC--CCC--GG
T ss_pred CCCCEEECCCCCCCCChH----HcCC--CCCCEEECCCCc--cCCC--h-----hhccCCcccEeecCCcc--cCc--hh
Confidence 456666666653211111 3333 667777776654 2211 0 13356666666665321 110 11
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEI 452 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l 452 (637)
...+++|++|++++|. ++... .+ ..++ +|++|++++|. +.... .+..+++|+.|+++++. +.... .
T Consensus 173 -~~~l~~L~~L~l~~n~-l~~~~--~l-~~l~-~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~n~-l~~~~--~- 238 (466)
T 1o6v_A 173 -LANLTTLERLDISSNK-VSDIS--VL-AKLT-NLESLIATNNQ-ISDIT---PLGILTNLDELSLNGNQ-LKDIG--T- 238 (466)
T ss_dssp -GTTCTTCCEEECCSSC-CCCCG--GG-GGCT-TCSEEECCSSC-CCCCG---GGGGCTTCCEEECCSSC-CCCCG--G-
T ss_pred -hccCCCCCEEECcCCc-CCCCh--hh-ccCC-CCCEEEecCCc-ccccc---cccccCCCCEEECCCCC-cccch--h-
Confidence 3456777888887763 33321 12 2233 78888887773 22211 14567778888777753 22211 1
Q ss_pred HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHH
Q 041246 453 VRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLE 532 (637)
Q Consensus 453 l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~ 532 (637)
+ ..+++|++|++++|. ++... . ...+++|+.|++++| .++.... ...+++|+.|+|++|.+++... +
T Consensus 239 l-~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~-- 305 (466)
T 1o6v_A 239 L-ASLTNLTDLDLANNQ-ISNLA--P-LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNENQLEDISP--I-- 305 (466)
T ss_dssp G-GGCTTCSEEECCSSC-CCCCG--G-GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSCCSCCGG--G--
T ss_pred h-hcCCCCCEEECCCCc-cccch--h-hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCCcccCchh--h--
Confidence 1 236777777777764 43221 1 344677777777774 4443211 3457777777777777654221 1
Q ss_pred hcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCC
Q 041246 533 VSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 533 ~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
...++|+.|+|++|.-.... . ...+++|++|++++|. +++. .. ...|++|+.|++.+|.
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~-~---~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDIS-P---VSSLTKLQRLFFYNNK-VSDV--SS-LANLTNINWLSAGHNQ 364 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCG-G---GGGCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECcCCcCCCch-h---hccCccCCEeECCCCc-cCCc--hh-hccCCCCCEEeCCCCc
Confidence 23467777777776432211 1 3456777777777775 5443 12 3467777777777763
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.43 E-value=4.4e-14 Score=157.91 Aligned_cols=88 Identities=22% Similarity=0.141 Sum_probs=40.9
Q ss_pred cCCCCCEEEeccCCCCHHHHHHHH-HhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhc
Q 041246 508 GCRSICSLKLCRNNFSDEALAAFL-EVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDN 586 (637)
Q Consensus 508 ~~~~L~~L~Ls~~~ltd~~l~~l~-~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~ 586 (637)
.+++|+.|+|++|.+++....... -...++|+.|+|+++.--...........+++|++|+|++|. ++. +......
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~ 408 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHP--MPDSCQW 408 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCC--CCSCCCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-Ccc--CChhhcc
Confidence 456666666666666554322110 012356666666665322221111233455666666666664 431 1111223
Q ss_pred CCCcCEEEeecC
Q 041246 587 CSLLRLLKLFGC 598 (637)
Q Consensus 587 cp~L~~L~L~~C 598 (637)
+++|++|++++|
T Consensus 409 ~~~L~~L~Ls~N 420 (549)
T 2z81_A 409 PEKMRFLNLSST 420 (549)
T ss_dssp CTTCCEEECTTS
T ss_pred cccccEEECCCC
Confidence 455566665555
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.43 E-value=5.8e-15 Score=161.13 Aligned_cols=301 Identities=17% Similarity=0.139 Sum_probs=169.0
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCC--CChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRI--LTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGL 370 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~--l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l 370 (637)
..++.|+++++. ++... ...+..+ ++|++|+|+++... +... .+..+++|++|+|+++. ++....
T Consensus 30 ~~l~~L~Ls~n~-i~~~~-~~~~~~l--~~L~~L~L~~n~~~~~i~~~--------~~~~l~~L~~L~Ls~n~-l~~~~~ 96 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELN-ETSFSRL--QDLQFLKVEQQTPGLVIRNN--------TFRGLSSLIILKLDYNQ-FLQLET 96 (455)
T ss_dssp TTCCEEECCSSC-CCEEC-TTTTSSC--TTCCEEECCCCSTTCEECTT--------TTTTCTTCCEEECTTCT-TCEECT
T ss_pred CccCEEEecCCc-cCcCC-hhHhccC--ccccEEECcCCcccceECcc--------cccccccCCEEeCCCCc-cCccCh
Confidence 678999999864 33210 1223444 89999999987631 1111 35589999999999974 332211
Q ss_pred HHHHHhCCCCCEEEecCCCCCChhHHHH-HHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcC--CCHH
Q 041246 371 SKLARSASALQSVNLSQCSLLTNEGINL-LVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIET--VDDY 447 (637)
Q Consensus 371 ~~L~~~~~~L~~L~Ls~c~~ls~~~l~~-L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~--l~~~ 447 (637)
.. +..+++|++|++++| .++...+.. ....++ +|++|++++|. +........+.++++|++|+++++.. +...
T Consensus 97 ~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~-~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 97 GA-FNGLANLEVLTLTQC-NLDGAVLSGNFFKPLT-SLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp TT-TTTCTTCCEEECTTS-CCBTHHHHSSTTTTCT-TCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred hh-ccCcccCCEEeCCCC-CCCccccCcccccCcc-cCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 11 255799999999997 565433322 122244 89999999984 33321122367899999999988532 1111
Q ss_pred HHHHHHHHcCCCccEEEecCCCCCCHHHH-----HHH--HhcCCCCCEEEEcCCCCCCHHHHHHHHh-------------
Q 041246 448 FVTEIVRAHCLNMRQLVLANCGQLTDRAL-----KFV--GKKCSRLCALDLSHLDNLTDATVQYLAD------------- 507 (637)
Q Consensus 448 ~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l-----~~l--~~~c~~L~~L~L~~c~~itd~~l~~L~~------------- 507 (637)
.+..+ ...+|+.|+++++. +++... ... ...+++|+.|++++| .++......+..
T Consensus 173 ~l~~l---~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 173 DLLNF---QGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp TSGGG---TTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred hhhcc---ccccccccccccCc-ccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeec
Confidence 11111 12345555554432 211000 000 011244555555552 344333222221
Q ss_pred -------------------------cCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCC
Q 041246 508 -------------------------GCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSR 562 (637)
Q Consensus 508 -------------------------~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~ 562 (637)
.+++|+.|++++|.++......+ ...++|++|+|+++.- +... ......++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~ 323 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEI-NKID-DNAFWGLT 323 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCC-CEEC-TTTTTTCT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc--ccCCCCCEEECCCCcc-cccC-hhHhcCcc
Confidence 13578888888887764322112 2247888888887642 2110 11234578
Q ss_pred CcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 563 NLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 563 ~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
+|++|+|++|. ++..... .+..+++|+.|+|++| .++..... ....+++|++|++.+
T Consensus 324 ~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~----------~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 324 HLLKLNLSQNF-LGSIDSR-MFENLDKLEVLDLSYN-HIRALGDQ----------SFLGLPNLKELALDT 380 (455)
T ss_dssp TCCEEECCSSC-CCEECGG-GGTTCTTCCEEECCSS-CCCEECTT----------TTTTCTTCCEEECCS
T ss_pred cCCEEECCCCc-cCCcChh-HhcCcccCCEEECCCC-cccccChh----------hccccccccEEECCC
Confidence 89999998886 5543222 2356888999999888 44433211 234567888888765
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.42 E-value=2.6e-15 Score=165.30 Aligned_cols=274 Identities=19% Similarity=0.111 Sum_probs=124.0
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHH
Q 041246 294 SPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKL 373 (637)
Q Consensus 294 ~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L 373 (637)
.++.|+++++. ++... ...+..+ ++|++|+|+++. ++... ...+..+++|++|+|+++. ++.... ..
T Consensus 33 ~l~~L~L~~n~-l~~~~-~~~~~~l--~~L~~L~L~~n~--i~~~~-----~~~~~~l~~L~~L~L~~n~-l~~~~~-~~ 99 (477)
T 2id5_A 33 ETRLLDLGKNR-IKTLN-QDEFASF--PHLEELELNENI--VSAVE-----PGAFNNLFNLRTLGLRSNR-LKLIPL-GV 99 (477)
T ss_dssp TCSEEECCSSC-CCEEC-TTTTTTC--TTCCEEECTTSC--CCEEC-----TTTTTTCTTCCEEECCSSC-CCSCCT-TS
T ss_pred CCcEEECCCCc-cceEC-HhHccCC--CCCCEEECCCCc--cCEeC-----hhhhhCCccCCEEECCCCc-CCccCc-cc
Confidence 45667776642 22110 0112333 677777777654 22110 0134466777777777652 221111 11
Q ss_pred HHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHH
Q 041246 374 ARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIV 453 (637)
Q Consensus 374 ~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll 453 (637)
+..+++|++|+|++| .++......+ ..++ +|++|+++++. +.... ...+..+++|++|+++++. +....... +
T Consensus 100 ~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~-~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~-l 172 (477)
T 2id5_A 100 FTGLSNLTKLDISEN-KIVILLDYMF-QDLY-NLKSLEVGDND-LVYIS-HRAFSGLNSLEQLTLEKCN-LTSIPTEA-L 172 (477)
T ss_dssp STTCTTCCEEECTTS-CCCEECTTTT-TTCT-TCCEEEECCTT-CCEEC-TTSSTTCTTCCEEEEESCC-CSSCCHHH-H
T ss_pred ccCCCCCCEEECCCC-ccccCChhHc-cccc-cCCEEECCCCc-cceeC-hhhccCCCCCCEEECCCCc-CcccChhH-h
Confidence 234567777777765 3332211111 1233 67777777653 22110 1234466677777776642 22111111 1
Q ss_pred HHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHh
Q 041246 454 RAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEV 533 (637)
Q Consensus 454 ~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~ 533 (637)
..+++|+.|+|+++. ++...... ...+++|+.|++++|..+...... . ....+|+.|+|++|.++......+ .
T Consensus 173 -~~l~~L~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~-~-~~~~~L~~L~l~~n~l~~~~~~~~--~ 245 (477)
T 2id5_A 173 -SHLHGLIVLRLRHLN-INAIRDYS-FKRLYRLKVLEISHWPYLDTMTPN-C-LYGLNLTSLSITHCNLTAVPYLAV--R 245 (477)
T ss_dssp -TTCTTCCEEEEESCC-CCEECTTC-SCSCTTCCEEEEECCTTCCEECTT-T-TTTCCCSEEEEESSCCCSCCHHHH--T
T ss_pred -cccCCCcEEeCCCCc-CcEeChhh-cccCcccceeeCCCCccccccCcc-c-ccCccccEEECcCCcccccCHHHh--c
Confidence 235667777776653 33211111 123566666666665333221100 0 112356666666665553322222 1
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 534 SGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 534 ~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
..++|+.|+|+++. ++.... .....+++|+.|+|++|. ++...... +..+++|+.|+|++|
T Consensus 246 ~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 246 HLVYLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGGQ-LAVVEPYA-FRGLNYLRVLNVSGN 306 (477)
T ss_dssp TCTTCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSSC-CSEECTTT-BTTCTTCCEEECCSS
T ss_pred CccccCeeECCCCc-CCccCh-hhccccccCCEEECCCCc-cceECHHH-hcCcccCCEEECCCC
Confidence 23566666666543 211000 112345566666666654 43321111 234566666666665
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=153.07 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=26.0
Q ss_pred CCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccc--eEEeccCC
Q 041246 350 SLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTL--RVLYIDHC 415 (637)
Q Consensus 350 ~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L--~~L~Ls~c 415 (637)
.+++|++|+|+++. ++...+...+..+++|++|++++| .++...+.. ++ +| +.|++++|
T Consensus 88 ~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~----l~-~L~L~~L~l~~n 148 (520)
T 2z7x_B 88 PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLP----IA-HLNISKVLLVLG 148 (520)
T ss_dssp CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEES-SCCGGGGGG----GT-TSCEEEEEEEEC
T ss_pred ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCc-ccchhhccc----cc-cceeeEEEeecc
Confidence 45555555555542 221111111234556666666664 344332221 21 34 66666655
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.40 E-value=8.8e-14 Score=155.50 Aligned_cols=65 Identities=18% Similarity=0.022 Sum_probs=42.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHH--HhCCCCcceEeeecCCCCCHHH-HHHHHhcCCCcCEEEeecCCCCC
Q 041246 535 GDSLTELSLNHVRGVGLNTALSL--AKCSRNLLSLDLSWCRFIKDEA-LGFIVDNCSLLRLLKLFGCSQIT 602 (637)
Q Consensus 535 ~~~L~~L~Ls~c~~l~~~~l~~l--~~~~~~L~~L~Ls~c~~ltd~~-l~~l~~~cp~L~~L~L~~C~~lt 602 (637)
.++|++|+|+++. ++....... ...+++|++|+|++|. ++... .......+++|+.|++++| .++
T Consensus 333 l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 400 (549)
T 2z81_A 333 LKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFH 400 (549)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCC
T ss_pred CccccEEEccCCc-cccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCc
Confidence 4788888888764 444322211 3467888888888887 65433 2344567888888888888 444
No 23
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=1.1e-11 Score=132.34 Aligned_cols=182 Identities=20% Similarity=0.155 Sum_probs=94.9
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|+.|+|++|. +++.....+...+...+++|++|+|++| .+++.++..++..+++|++|+|++| .+++.++..++
T Consensus 72 ~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGVR--MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp TTCCEEECTTSC--CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred hhCCEEEecCCC--CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 556666666665 5555444444333334456777777765 4666666666666666777777765 66666666655
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHH--HcCCCccEEEecCCCCCCHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVR--AHCLNMRQLVLANCGQLTDRALKF 478 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~--~~~~~L~~L~Ls~c~~ltd~~l~~ 478 (637)
.... ...++|++|+|+++ .+++.+...+.. ..+++|++|+|++| .+++.++..
T Consensus 148 ~~L~-----------------------~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~ 202 (372)
T 3un9_A 148 DLLL-----------------------HDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLEL 202 (372)
T ss_dssp HHHH-----------------------STTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHH
T ss_pred HHHH-----------------------hcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHH
Confidence 4321 12334444444443 233333222211 12455555555554 355554433
Q ss_pred HH---hcCCCCCEEEEcCCCCCCHHHHHHHHh---cCCCCCEEEeccCCCCHHHHHHHHH
Q 041246 479 VG---KKCSRLCALDLSHLDNLTDATVQYLAD---GCRSICSLKLCRNNFSDEALAAFLE 532 (637)
Q Consensus 479 l~---~~c~~L~~L~L~~c~~itd~~l~~L~~---~~~~L~~L~Ls~~~ltd~~l~~l~~ 532 (637)
++ ..+++|+.|+|++| .+++.+...++. .+++|+.|+|++|.+++.++..+..
T Consensus 203 L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 33 23455666666653 555555444432 3455666666666666666555543
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.35 E-value=1.7e-14 Score=154.51 Aligned_cols=261 Identities=15% Similarity=0.113 Sum_probs=129.2
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|+.|+|+++. +++... ..+..+++|++|+|+++. ++.... ..+..+++|++|++++| .++.-... +.
T Consensus 69 ~~L~~L~L~~n~--i~~~~~-----~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~-~~ 137 (390)
T 3o6n_A 69 RQVELLNLNDLQ--IEEIDT-----YAFAYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERN-DLSSLPRG-IF 137 (390)
T ss_dssp CCCSEEECTTSC--CCEECT-----TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TT
T ss_pred ccCcEEECCCCc--ccccCh-----hhccCCCCcCEEECCCCC-CCcCCH-HHhcCCCCCCEEECCCC-ccCcCCHH-Hh
Confidence 666666666654 221100 023456666666666653 221111 11234566666666665 33311110 01
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCC-------------------cc
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLN-------------------MR 461 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~-------------------L~ 461 (637)
..++ +|++|++++|. +... ....+..+++|++|+++++. +....+ ..+++ |+
T Consensus 138 ~~l~-~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~L~ 208 (390)
T 3o6n_A 138 HNTP-KLTTLSMSNNN-LERI-EDDTFQATTSLQNLQLSSNR-LTHVDL-----SLIPSLFHANVSYNLLSTLAIPIAVE 208 (390)
T ss_dssp TTCT-TCCEEECCSSC-CCBC-CTTTTSSCTTCCEEECCSSC-CSBCCG-----GGCTTCSEEECCSSCCSEEECCSSCS
T ss_pred cCCC-CCcEEECCCCc-cCcc-ChhhccCCCCCCEEECCCCc-CCcccc-----ccccccceeecccccccccCCCCcce
Confidence 1122 56666666652 2211 01223455666666666532 221111 11344 44
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEE
Q 041246 462 QLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTEL 541 (637)
Q Consensus 462 ~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L 541 (637)
+|+++++. ++... ....++|+.|+++++ .+++. .....+++|+.|+|++|.++......+ ...++|++|
T Consensus 209 ~L~l~~n~-l~~~~----~~~~~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L 277 (390)
T 3o6n_A 209 ELDASHNS-INVVR----GPVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERL 277 (390)
T ss_dssp EEECCSSC-CCEEE----CCCCSSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEE
T ss_pred EEECCCCe-eeecc----ccccccccEEECCCC-CCccc---HHHcCCCCccEEECCCCcCCCcChhHc--cccccCCEE
Confidence 44444432 22110 012356777777774 55542 223567788888888887765322222 123678888
Q ss_pred EcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecCCC
Q 041246 542 SLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPL 621 (637)
Q Consensus 542 ~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~ 621 (637)
+|+++. ++. +......+++|++|+|++|. ++... .....+++|+.|++.+|. ++.. ....
T Consensus 278 ~L~~n~-l~~--~~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~L~~N~-i~~~-------------~~~~ 337 (390)
T 3o6n_A 278 YISNNR-LVA--LNLYGQPIPTLKVLDLSHNH-LLHVE--RNQPQFDRLENLYLDHNS-IVTL-------------KLST 337 (390)
T ss_dssp ECCSSC-CCE--EECSSSCCTTCCEEECCSSC-CCCCG--GGHHHHTTCSEEECCSSC-CCCC-------------CCCT
T ss_pred ECCCCc-Ccc--cCcccCCCCCCCEEECCCCc-ceecC--ccccccCcCCEEECCCCc-ccee-------------Cchh
Confidence 888754 221 11112356788888888876 54221 112346788888888774 4332 1345
Q ss_pred CCCCCeeeccC
Q 041246 622 TPALKHIQVLE 632 (637)
Q Consensus 622 lp~L~~L~l~~ 632 (637)
+++|+.|++.+
T Consensus 338 ~~~L~~L~l~~ 348 (390)
T 3o6n_A 338 HHTLKNLTLSH 348 (390)
T ss_dssp TCCCSEEECCS
T ss_pred hccCCEEEcCC
Confidence 67778887765
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.35 E-value=1.7e-14 Score=158.77 Aligned_cols=255 Identities=18% Similarity=0.163 Sum_probs=163.7
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++++.|+|+++. ++.-. ...+..+++|++|+|+++ .++...... +..+++|++|+|++| .++......+
T Consensus 32 ~~l~~L~L~~n~--l~~~~-----~~~~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~- 100 (477)
T 2id5_A 32 TETRLLDLGKNR--IKTLN-----QDEFASFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSN-RLKLIPLGVF- 100 (477)
T ss_dssp TTCSEEECCSSC--CCEEC-----TTTTTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCTTSS-
T ss_pred CCCcEEECCCCc--cceEC-----HhHccCCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCC-cCCccCcccc-
Confidence 689999999876 33211 114568999999999987 343321112 356799999999997 4443221112
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG 480 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 480 (637)
..++ +|+.|+|++|.. ... ....+..+++|++|+++++. +....... + ..+++|++|+|++| .++......+
T Consensus 101 ~~l~-~L~~L~Ls~n~i-~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~-~~l~~L~~L~l~~n-~l~~~~~~~l- 172 (477)
T 2id5_A 101 TGLS-NLTKLDISENKI-VIL-LDYMFQDLYNLKSLEVGDND-LVYISHRA-F-SGLNSLEQLTLEKC-NLTSIPTEAL- 172 (477)
T ss_dssp TTCT-TCCEEECTTSCC-CEE-CTTTTTTCTTCCEEEECCTT-CCEECTTS-S-TTCTTCCEEEEESC-CCSSCCHHHH-
T ss_pred cCCC-CCCEEECCCCcc-ccC-ChhHccccccCCEEECCCCc-cceeChhh-c-cCCCCCCEEECCCC-cCcccChhHh-
Confidence 2244 899999999843 221 12345789999999998853 22211111 1 23789999999987 4554333333
Q ss_pred hcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhC
Q 041246 481 KKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKC 560 (637)
Q Consensus 481 ~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~ 560 (637)
..+++|+.|++.++ .++..... .+..+++|+.|+|++|.+........ ....+|++|+|+++. ++... ......
T Consensus 173 ~~l~~L~~L~l~~n-~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~-l~~~~-~~~~~~ 246 (477)
T 2id5_A 173 SHLHGLIVLRLRHL-NINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCN-LTAVP-YLAVRH 246 (477)
T ss_dssp TTCTTCCEEEEESC-CCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSC-CCSCC-HHHHTT
T ss_pred cccCCCcEEeCCCC-cCcEeChh-hcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCc-ccccC-HHHhcC
Confidence 45899999999995 55532211 23468899999999876433211111 123589999999874 33211 123457
Q ss_pred CCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCCh
Q 041246 561 SRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITN 603 (637)
Q Consensus 561 ~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd 603 (637)
+++|+.|+|++|. ++...... +..+++|+.|+|.+| .++.
T Consensus 247 l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~ 286 (477)
T 2id5_A 247 LVYLRFLNLSYNP-ISTIEGSM-LHELLRLQEIQLVGG-QLAV 286 (477)
T ss_dssp CTTCCEEECCSSC-CCEECTTS-CTTCTTCCEEECCSS-CCSE
T ss_pred ccccCeeECCCCc-CCccChhh-ccccccCCEEECCCC-ccce
Confidence 8999999999997 65333222 357899999999998 4444
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.35 E-value=5.3e-15 Score=167.58 Aligned_cols=279 Identities=19% Similarity=0.150 Sum_probs=147.2
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|+++++. ++... ...+..+ ++|+.|+|+++.. +. + ...+..+++|++|+++++. ++.... .
T Consensus 254 ~~L~~L~l~~n~-l~~~~-~~~~~~l--~~L~~L~l~~n~l--~~--l----p~~l~~l~~L~~L~l~~n~-l~~~~~-~ 319 (606)
T 3t6q_A 254 MSVESINLQKHY-FFNIS-SNTFHCF--SGLQELDLTATHL--SE--L----PSGLVGLSTLKKLVLSANK-FENLCQ-I 319 (606)
T ss_dssp SEEEEEECTTCC-CSSCC-TTTTTTC--TTCSEEECTTSCC--SC--C----CSSCCSCTTCCEEECTTCC-CSBGGG-G
T ss_pred CceeEEEeecCc-cCccC-HHHhccc--cCCCEEeccCCcc--CC--C----ChhhcccccCCEEECccCC-cCcCch-h
Confidence 356777777753 21100 1112333 7888888887652 21 0 1124567888888888763 332111 1
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEI 452 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l 452 (637)
.+..+++|++|++++|..........+ ..++ +|+.|++++|...........+..+++|++|+++++. +.......
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~- 395 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCL-ENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEA- 395 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTT-TTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTT-
T ss_pred hhhccCcCCEEECCCCCcccccchhhh-hccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHH-
Confidence 224567888888887632211111111 1233 7888888877432221112345677788888887753 11110001
Q ss_pred HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHH-HH
Q 041246 453 VRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAA-FL 531 (637)
Q Consensus 453 l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~-l~ 531 (637)
+ ..+++|++|++++|. ++..........+++|+.|++++| .++..... ....+++|+.|+|++|.+++..+.. -.
T Consensus 396 ~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 396 F-KECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp T-TTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTC-CCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred h-cCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCC-ccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchh
Confidence 1 236778888887763 332211122234677888888775 44432211 2245777888888877765422110 00
Q ss_pred HhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 532 EVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 532 ~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
-...++|+.|+|++|.- +... ......+++|+.|+|++|. ++......+ ..++.| .|++++|
T Consensus 472 ~~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l-~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDL-SSID-QHAFTSLKMMNHVDLSHNR-LTSSSIEAL-SHLKGI-YLNLASN 533 (606)
T ss_dssp GGGCTTCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSSC-CCGGGGGGG-TTCCSC-EEECCSS
T ss_pred hccCCCccEEECCCCcc-CccC-hhhhccccCCCEEECCCCc-cCcCChhHh-Cccccc-EEECcCC
Confidence 01246788888877642 2110 1122456778888887776 665544333 356777 7777777
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.34 E-value=5.8e-14 Score=154.29 Aligned_cols=202 Identities=15% Similarity=0.072 Sum_probs=101.7
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|+++++. ++.. . -+..+ ++|++|+|+++. ++.- .+..+++|++|+++++. ++...
T Consensus 42 ~~L~~L~Ls~n~-l~~~--~-~l~~l--~~L~~L~Ls~n~--l~~~--------~~~~l~~L~~L~Ls~N~-l~~~~--- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSS-ITDM--T-GIEKL--TGLTKLICTSNN--ITTL--------DLSQNTNLTYLACDSNK-LTNLD--- 101 (457)
T ss_dssp TTCCEEECCSSC-CCCC--T-TGGGC--TTCSEEECCSSC--CSCC--------CCTTCTTCSEEECCSSC-CSCCC---
T ss_pred CCCCEEEccCCC-cccC--h-hhccc--CCCCEEEccCCc--CCeE--------ccccCCCCCEEECcCCC-Cceee---
Confidence 456677777653 2221 1 13333 677777777765 2221 13466777777777653 32211
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEI 452 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l 452 (637)
+..+++|++|++++| .++... + ..++ +|+.|++++|. ++.. .+..+++|+.|+++++..+....+
T Consensus 102 -~~~l~~L~~L~L~~N-~l~~l~---~-~~l~-~L~~L~l~~N~-l~~l----~l~~l~~L~~L~l~~n~~~~~~~~--- 166 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTN-KLTKLD---V-SQNP-LLTYLNCARNT-LTEI----DVSHNTQLTELDCHLNKKITKLDV--- 166 (457)
T ss_dssp -CTTCTTCCEEECCSS-CCSCCC---C-TTCT-TCCEEECTTSC-CSCC----CCTTCTTCCEEECTTCSCCCCCCC---
T ss_pred -cCCCCcCCEEECCCC-cCCeec---C-CCCC-cCCEEECCCCc-ccee----ccccCCcCCEEECCCCCccccccc---
Confidence 244667777777775 333321 1 2233 67777776662 3322 144566666666666533322211
Q ss_pred HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHH
Q 041246 453 VRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLE 532 (637)
Q Consensus 453 l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~ 532 (637)
..+++|++|++++| .++... ...+++|+.|+++++ .++... ...+++|+.|++++|+++... +
T Consensus 167 --~~l~~L~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~l~~ip---~-- 229 (457)
T 3bz5_A 167 --TPQTQLTTLDCSFN-KITELD----VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNKLTEID---V-- 229 (457)
T ss_dssp --TTCTTCCEEECCSS-CCCCCC----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSCCSCCC---C--
T ss_pred --ccCCcCCEEECCCC-ccceec----cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCCcccccC---c--
Confidence 12456666666655 343321 223556666666653 343321 234556666666666555421 1
Q ss_pred hcCCCccEEEcCCC
Q 041246 533 VSGDSLTELSLNHV 546 (637)
Q Consensus 533 ~~~~~L~~L~Ls~c 546 (637)
..+++|+.|+++++
T Consensus 230 ~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 230 TPLTQLTYFDCSVN 243 (457)
T ss_dssp TTCTTCSEEECCSS
T ss_pred cccCCCCEEEeeCC
Confidence 12355666666554
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.33 E-value=6.5e-15 Score=166.86 Aligned_cols=259 Identities=16% Similarity=0.098 Sum_probs=164.9
Q ss_pred CeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHH
Q 041246 322 NLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVK 401 (637)
Q Consensus 322 nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~ 401 (637)
+|+.|+|+++.. +.-. ...+..+++|++|+++++. ++. +..-+..+++|++|++++| .++......+.
T Consensus 255 ~L~~L~l~~n~l--~~~~-----~~~~~~l~~L~~L~l~~n~-l~~--lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~- 322 (606)
T 3t6q_A 255 SVESINLQKHYF--FNIS-----SNTFHCFSGLQELDLTATH-LSE--LPSGLVGLSTLKKLVLSAN-KFENLCQISAS- 322 (606)
T ss_dssp EEEEEECTTCCC--SSCC-----TTTTTTCTTCSEEECTTSC-CSC--CCSSCCSCTTCCEEECTTC-CCSBGGGGCGG-
T ss_pred ceeEEEeecCcc--CccC-----HHHhccccCCCEEeccCCc-cCC--CChhhcccccCCEEECccC-CcCcCchhhhh-
Confidence 688888887652 2211 1135688999999999974 331 1111245789999999997 45443222222
Q ss_pred hhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHH--HHHHHHHcCCCccEEEecCCCCCCHHHHHHH
Q 041246 402 HLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYF--VTEIVRAHCLNMRQLVLANCGQLTDRALKFV 479 (637)
Q Consensus 402 ~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~--l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l 479 (637)
.++ +|+.|++++|...... ....+..+++|++|+++++. +.... ... + ..+++|++|++++|. ++......+
T Consensus 323 ~l~-~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~-~~l~~L~~L~l~~n~-l~~~~~~~~ 396 (606)
T 3t6q_A 323 NFP-SLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDD-IETSDCCNLQ-L-RNLSHLQSLNLSYNE-PLSLKTEAF 396 (606)
T ss_dssp GCT-TCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSC-CCEEEESTTT-T-TTCTTCCEEECCSCS-CEEECTTTT
T ss_pred ccC-cCCEEECCCCCccccc-chhhhhccCcCCEEECCCCc-cccccCcchh-c-ccCCCCCEEECCCCc-CCcCCHHHh
Confidence 244 8999999998533211 12235689999999999853 22211 001 1 347899999999874 443222222
Q ss_pred HhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHH--HHH
Q 041246 480 GKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTA--LSL 557 (637)
Q Consensus 480 ~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l--~~l 557 (637)
..+++|+.|++++| .++..........+++|+.|++++|.++......+ ...++|++|+|+++.- +...+ ...
T Consensus 397 -~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l-~~~~~~~~~~ 471 (606)
T 3t6q_A 397 -KECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHF-PKGNIQKTNS 471 (606)
T ss_dssp -TTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBC-GGGEECSSCG
T ss_pred -cCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCC-Cccccccchh
Confidence 34899999999995 44432222223568999999999998765432222 2348999999998753 21100 012
Q ss_pred HhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhh
Q 041246 558 AKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFL 606 (637)
Q Consensus 558 ~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l 606 (637)
...+++|++|+|++|. ++...... +..+++|+.|+|++| .++....
T Consensus 472 ~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~ 517 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCD-LSSIDQHA-FTSLKMMNHVDLSHN-RLTSSSI 517 (606)
T ss_dssp GGGCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCCGGGG
T ss_pred hccCCCccEEECCCCc-cCccChhh-hccccCCCEEECCCC-ccCcCCh
Confidence 4568999999999997 66433222 357899999999998 5665543
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=3.8e-14 Score=160.82 Aligned_cols=123 Identities=23% Similarity=0.168 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCC
Q 041246 484 SRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRN 563 (637)
Q Consensus 484 ~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~ 563 (637)
++|+.|++++| .++.. .....+++|+.|+|++|.++......+ ...++|+.|+|+++.- +. +......+++
T Consensus 232 ~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l-~~--l~~~~~~l~~ 302 (597)
T 3oja_B 232 VELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRL-VA--LNLYGQPIPT 302 (597)
T ss_dssp SCCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECTTSCC-CE--EECSSSCCTT
T ss_pred CCCCEEECCCC-CCCCC---hhhccCCCCCEEECCCCccCCCCHHHh--cCccCCCEEECCCCCC-CC--CCcccccCCC
Confidence 56777777774 45542 223467788888888887764322222 1236788888887542 21 1112234678
Q ss_pred cceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 564 LLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 564 L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
|+.|+|++|. ++. +......+++|+.|+|++|. ++.. ....+++|+.|++++
T Consensus 303 L~~L~Ls~N~-l~~--i~~~~~~l~~L~~L~L~~N~-l~~~-------------~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 303 LKVLDLSHNH-LLH--VERNQPQFDRLENLYLDHNS-IVTL-------------KLSTHHTLKNLTLSH 354 (597)
T ss_dssp CCEEECCSSC-CCC--CGGGHHHHTTCSEEECCSSC-CCCC-------------CCCTTCCCSEEECCS
T ss_pred CcEEECCCCC-CCc--cCcccccCCCCCEEECCCCC-CCCc-------------ChhhcCCCCEEEeeC
Confidence 8888888876 542 11112356788888888774 3322 133456777777654
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.32 E-value=8.8e-14 Score=147.04 Aligned_cols=240 Identities=16% Similarity=0.152 Sum_probs=103.6
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHh
Q 041246 349 FSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALR 428 (637)
Q Consensus 349 ~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~ 428 (637)
..+++|++|+|+++ .++..... .+..+++|++|++++| .++......+. .++ +|++|++++|. +........+.
T Consensus 73 ~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~-~L~~L~L~~n~-l~~l~~~~~~~ 146 (353)
T 2z80_A 73 QRCVNLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYN-YLSNLSSSWFK-PLS-SLTFLNLLGNP-YKTLGETSLFS 146 (353)
T ss_dssp TTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSSCCHHHHT-TCT-TCSEEECTTCC-CSSSCSSCSCT
T ss_pred ccCCCCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCC-cCCcCCHhHhC-CCc-cCCEEECCCCC-CcccCchhhhc
Confidence 35555555555554 22211100 1133455566666554 33322111111 122 55666665552 22111001234
Q ss_pred cCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhc
Q 041246 429 KLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADG 508 (637)
Q Consensus 429 ~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~ 508 (637)
.+++|++|+++++..+....... + ..+++|++|++++|. ++......+ ..+++|+.|+++++ .++... ..+...
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~~~-~-~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l~~n-~l~~~~-~~~~~~ 220 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQRKD-F-AGLTFLEELEIDASD-LQSYEPKSL-KSIQNVSHLILHMK-QHILLL-EIFVDV 220 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECTTT-T-TTCCEEEEEEEEETT-CCEECTTTT-TTCSEEEEEEEECS-CSTTHH-HHHHHH
T ss_pred cCCCCcEEECCCCccccccCHHH-c-cCCCCCCEEECCCCC-cCccCHHHH-hccccCCeecCCCC-ccccch-hhhhhh
Confidence 55566666665542222110000 1 124566666666542 332211111 22556666666663 343322 122234
Q ss_pred CCCCCEEEeccCCCCHHHHHHHH-HhcCCCccEEEcCCCCCCCHHHHHH---HHhCCCCcceEeeecCCCCCHHHHHHHH
Q 041246 509 CRSICSLKLCRNNFSDEALAAFL-EVSGDSLTELSLNHVRGVGLNTALS---LAKCSRNLLSLDLSWCRFIKDEALGFIV 584 (637)
Q Consensus 509 ~~~L~~L~Ls~~~ltd~~l~~l~-~~~~~~L~~L~Ls~c~~l~~~~l~~---l~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 584 (637)
+++|+.|+|++|.++......+. ......++.++|.++ .+++..+.. ....+++|++|+|++|. ++... ..++
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~-~~~~ 297 (353)
T 2z80_A 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVP-DGIF 297 (353)
T ss_dssp TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCC-TTTT
T ss_pred cccccEEECCCCccccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCC-CCccC-HHHH
Confidence 56666666666655432111110 012345555666554 244433222 23456677777777665 44211 1222
Q ss_pred hcCCCcCEEEeecCCCCCh
Q 041246 585 DNCSLLRLLKLFGCSQITN 603 (637)
Q Consensus 585 ~~cp~L~~L~L~~C~~ltd 603 (637)
..+++|++|++.+|+...+
T Consensus 298 ~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTCTTCCEEECCSSCBCCC
T ss_pred hcCCCCCEEEeeCCCccCc
Confidence 4566777777777654443
No 31
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.32 E-value=2.1e-14 Score=149.77 Aligned_cols=253 Identities=15% Similarity=0.080 Sum_probs=170.6
Q ss_pred HHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCC
Q 041246 310 DFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCS 389 (637)
Q Consensus 310 ~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~ 389 (637)
.+..++..+ ++|+.|+|+++. ++.... ..+..+++|++|+|+++. ++... . +..+++|++|++++|
T Consensus 25 ~~~~~~~~~--~~L~~L~L~~n~--l~~~~~-----~~~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n- 90 (317)
T 3o53_A 25 ALASLRQSA--WNVKELDLSGNP--LSQISA-----ADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNN- 90 (317)
T ss_dssp HHHHHHTTG--GGCSEEECTTSC--CCCCCH-----HHHTTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSS-
T ss_pred hHHHHhccC--CCCCEEECcCCc--cCcCCH-----HHhhCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCC-
Confidence 344566655 799999999886 332211 134589999999999974 32111 1 356799999999997
Q ss_pred CCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCC
Q 041246 390 LLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCG 469 (637)
Q Consensus 390 ~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~ 469 (637)
.++... .. ++|+.|++++|. ++... ...+++|++|+++++. +....... + ..+++|++|++++|
T Consensus 91 ~l~~l~------~~-~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~N~-l~~~~~~~-~-~~l~~L~~L~Ls~N- 154 (317)
T 3o53_A 91 YVQELL------VG-PSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNK-ITMLRDLD-E-GCRSRVQYLDLKLN- 154 (317)
T ss_dssp EEEEEE------EC-TTCCEEECCSSC-CSEEE----ECCCSSCEEEECCSSC-CCSGGGBC-T-GGGSSEEEEECTTS-
T ss_pred cccccc------CC-CCcCEEECCCCc-cCCcC----ccccCCCCEEECCCCC-CCCccchh-h-hccCCCCEEECCCC-
Confidence 444321 12 389999999984 33221 1257889999999853 33211111 1 23689999999987
Q ss_pred CCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCC
Q 041246 470 QLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGV 549 (637)
Q Consensus 470 ~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l 549 (637)
.++......+...+++|+.|++++| .++.. ... ..+++|+.|+|++|.++..... + ...++|++|+|+++. +
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~~-~--~~l~~L~~L~L~~N~-l 226 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSNKLAFMGPE-F--QSAAGVTWISLRNNK-L 226 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSSCCCEECGG-G--GGGTTCSEEECTTSC-C
T ss_pred CCCcccHHHHhhccCcCCEEECCCC-cCccc--ccc-cccccCCEEECCCCcCCcchhh-h--cccCcccEEECcCCc-c
Confidence 5766544555556899999999995 56543 111 2378999999999998753211 2 134899999999874 3
Q ss_pred CHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCCh
Q 041246 550 GLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITN 603 (637)
Q Consensus 550 ~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd 603 (637)
+. +......+++|+.|+|++|. ++...+..+...+++|+.|++.+|..++.
T Consensus 227 ~~--l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 227 VL--IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CE--ECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cc--hhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCchhccC
Confidence 32 22223567899999999998 88666667777899999999987755543
No 32
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=2.2e-11 Score=130.12 Aligned_cols=174 Identities=26% Similarity=0.297 Sum_probs=116.1
Q ss_pred ccceEEeccCCCccchhc---HHHHHh-cCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH
Q 041246 405 STLRVLYIDHCQNIDAVS---MLPALR-KLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG 480 (637)
Q Consensus 405 ~~L~~L~Ls~c~~i~~~~---l~~~l~-~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 480 (637)
++|+.|++++|. ++... +...+. ..++|++|+|+++ .+++.++..+... +++|++|+|++| .+++.+...++
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPV-FLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHH-HHTEEEEECCSS-CCCHHHHHHHH
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHH-HHhccHhhcCCC-CCCHHHHHHHH
Confidence 378888888873 44332 222333 2357888888885 4667666554433 567888888877 57777766655
Q ss_pred h----cCCCCCEEEEcCCCCCCHHHHHHHH---hcCCCCCEEEeccCCCCHHHHHHHHH--hcCCCccEEEcCCCCCCCH
Q 041246 481 K----KCSRLCALDLSHLDNLTDATVQYLA---DGCRSICSLKLCRNNFSDEALAAFLE--VSGDSLTELSLNHVRGVGL 551 (637)
Q Consensus 481 ~----~c~~L~~L~L~~c~~itd~~l~~L~---~~~~~L~~L~Ls~~~ltd~~l~~l~~--~~~~~L~~L~Ls~c~~l~~ 551 (637)
. .+++|+.|+|++| .+++.+...++ ..+++|++|+|++|.+++.++..+.. ..+++|+.|+|++| .+++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 3 3577888888885 67776665554 45677888888888888877665543 12357888888875 4666
Q ss_pred HHHHHHH---hCCCCcceEeeecCCCCCHHHHHHHHh
Q 041246 552 NTALSLA---KCSRNLLSLDLSWCRFIKDEALGFIVD 585 (637)
Q Consensus 552 ~~l~~l~---~~~~~L~~L~Ls~c~~ltd~~l~~l~~ 585 (637)
.++..++ ..+++|++|+|++|. |++.++..+..
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~ 261 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHH
Confidence 6555443 345778888888876 78877777664
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=1.4e-13 Score=161.89 Aligned_cols=279 Identities=12% Similarity=0.088 Sum_probs=153.3
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHH---HhccCCCCccEEEecCCCCCCHH
Q 041246 292 SGSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIV---TQNFSLPALTTISLTGAYQLTDF 368 (637)
Q Consensus 292 ~~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~---~~~~~l~~L~~L~Ls~~~~isd~ 368 (637)
...++.|+|++|..... +...+..+ ++|+.|+|+++.. ++...+...+. ..+..+++|++|+|+++. ++
T Consensus 490 L~~L~~L~Ls~N~l~~~--iP~~l~~L--~~L~~L~Ls~N~~-lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~-- 561 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQ--LPDFLYDL--PELQSLNIACNRG-ISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE-- 561 (876)
T ss_dssp CTTCCEEEEESCTTCCS--CCGGGGGC--SSCCEEECTTCTT-SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--
T ss_pred CCCCCEEECcCCCCCcc--ChHHHhCC--CCCCEEECcCCCC-cccccchHHHHhhhhcccccCCccEEEeeCCc-CC--
Confidence 36788999998753322 11223444 8999999998763 33311221111 134577899999999874 43
Q ss_pred HHHH--HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCC-CcEEeccCCcCCC
Q 041246 369 GLSK--LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNC-LEVLSVAGIETVD 445 (637)
Q Consensus 369 ~l~~--L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~-L~~L~Ls~~~~l~ 445 (637)
.+.. .+..+++|+.|+|++| .++. +..+ ..++ +|+.|+|++|. +. .+...+..+++ |+.|+++++. +.
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N-~l~~--lp~~-~~L~-~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~-L~ 632 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHN-KVRH--LEAF-GTNV-KLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNK-LK 632 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTS-CCCB--CCCC-CTTS-EESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSC-CC
T ss_pred ccCChhhhhcCCCCCEEECCCC-Cccc--chhh-cCCC-cceEEECcCCc-cc--cchHHHhhccccCCEEECcCCC-CC
Confidence 2222 3466889999999987 4442 2122 2233 79999999884 33 23344667887 9999998853 22
Q ss_pred HHHHHHHHH-HcCCCccEEEecCCCCCCHHHHHHHH-----hcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEecc
Q 041246 446 DYFVTEIVR-AHCLNMRQLVLANCGQLTDRALKFVG-----KKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCR 519 (637)
Q Consensus 446 ~~~l~~ll~-~~~~~L~~L~Ls~c~~ltd~~l~~l~-----~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~ 519 (637)
. +...+. ...++|+.|+|++|. ++.. +..+. -.+++|+.|++++| .++... ..+...+++|+.|+|++
T Consensus 633 ~--lp~~~~~~~~~~L~~L~Ls~N~-l~g~-ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp-~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 633 Y--IPNIFNAKSVYVMGSVDFSYNK-IGSE-GRNISCSMDDYKGINASTVTLSYN-EIQKFP-TELFATGSPISTIILSN 706 (876)
T ss_dssp S--CCSCCCTTCSSCEEEEECCSSC-TTTT-SSSCSSCTTTCCCCCEEEEECCSS-CCCSCC-HHHHHTTCCCSEEECCS
T ss_pred c--CchhhhccccCCCCEEECcCCc-CCCc-cccchhhhccccCCCcCEEEccCC-cCCccC-HHHHccCCCCCEEECCC
Confidence 1 111111 112347888887763 4321 01010 02346777777774 555211 23334567777777777
Q ss_pred CCCCHHHHHHHHHh-----cCCCccEEEcCCCCCCCHHHHHHHH--hCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCE
Q 041246 520 NNFSDEALAAFLEV-----SGDSLTELSLNHVRGVGLNTALSLA--KCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRL 592 (637)
Q Consensus 520 ~~ltd~~l~~l~~~-----~~~~L~~L~Ls~c~~l~~~~l~~l~--~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~ 592 (637)
|.++......+... .+++|+.|+|++|. ++ .+.... ..+++|+.|+|++|. ++. +..-+..+++|+.
T Consensus 707 N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~--~lp~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~ 780 (876)
T 4ecn_A 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LT--SLSDDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKA 780 (876)
T ss_dssp CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CC--CCCGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCE
T ss_pred CcCCccChHHhccccccccccCCccEEECCCCC-Cc--cchHHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCE
Confidence 76652110000000 01267777777653 22 111122 256777777777776 543 2222335677777
Q ss_pred EEeecCC
Q 041246 593 LKLFGCS 599 (637)
Q Consensus 593 L~L~~C~ 599 (637)
|+|++|.
T Consensus 781 L~Ls~N~ 787 (876)
T 4ecn_A 781 FGIRHQR 787 (876)
T ss_dssp EECCCCB
T ss_pred EECCCCC
Confidence 7776643
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.30 E-value=8e-14 Score=160.16 Aligned_cols=276 Identities=18% Similarity=0.141 Sum_probs=136.5
Q ss_pred CCCcEEEEcCCC--CCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHH
Q 041246 293 GSPTEIRLNDCS--EINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGL 370 (637)
Q Consensus 293 ~~l~~L~Ls~c~--~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l 370 (637)
..++.|+++++. .+.... +..+ ++|++|+|+++.. +.... ..+.++++|++|+|+++. ++....
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~----~~~l--~~L~~L~Ls~n~l--~~~~~-----~~~~~l~~L~~L~L~~n~-l~~l~~ 90 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAAN----FTRY--SQLTSLDVGFNTI--SKLEP-----ELCQKLPMLKVLNLQHNE-LSQLSD 90 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGG----GGGG--TTCSEEECCSSCC--CCCCT-----THHHHCTTCCEEECCSSC-CCCCCT
T ss_pred CCCcEEECCCCCCCCcCHHH----HhCC--CcCcEEECCCCcc--CccCH-----HHHhcccCcCEEECCCCc-cCccCh
Confidence 457778887763 222222 3334 7888888887652 21100 022367888888888763 321111
Q ss_pred HHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCc--CCCHHH
Q 041246 371 SKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIE--TVDDYF 448 (637)
Q Consensus 371 ~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~--~l~~~~ 448 (637)
..+..+++|++|++++| .++......+. .++ +|++|++++|. +... ....+.++++|++|+++++. .+....
T Consensus 91 -~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~-~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 91 -KTFAFCTNLTELHLMSN-SIQKIKNNPFV-KQK-NLITLDLSHNG-LSST-KLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp -TTTTTCTTCSEEECCSS-CCCCCCSCTTT-TCT-TCCEEECCSSC-CSCC-CCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred -hhhccCCCCCEEECCCC-ccCccChhHcc-ccC-CCCEEECCCCc-cccc-CchhhcccccCCEEEccCCcccccCHHH
Confidence 11245678888888876 33321111121 233 78888888773 2211 11234567888888887742 122222
Q ss_pred HHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHh--cCCCCCEEEeccCCCCHHH
Q 041246 449 VTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLAD--GCRSICSLKLCRNNFSDEA 526 (637)
Q Consensus 449 l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~--~~~~L~~L~Ls~~~ltd~~ 526 (637)
+. ...+++|++|++++| .++......+ ..+++|+.|++.++ .++......+.. ..++|+.|++++|.++...
T Consensus 165 ~~---~~~~~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 165 LD---IFANSSLKKLELSSN-QIKEFSPGCF-HAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp HG---GGTTCEESEEECTTC-CCCCBCTTGG-GGSSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred hh---ccccccccEEECCCC-cccccChhhh-hhhhhhhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence 11 112477888888876 3432211112 23566777777664 444433333221 2356666666666554322
Q ss_pred HHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 527 LAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 527 l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
...+.....++|+.|+|+++.- +... ......+++|++|+|++|. ++...... +.++++|+.|++.+|
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNL-NVVG-NDSFAWLPQLEYFFLEYNN-IQHLFSHS-LHGLFNVRYLNLKRS 306 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSCC-BSEECTTT-TTTCTTCCEEECTTC
T ss_pred hhHhhccCcCCCCEEECCCCCc-CccC-cccccCcccccEeeCCCCc-cCccChhh-hcCCCCccEEeccch
Confidence 2222111223466666665531 1100 0112345666666666664 33221111 234555555555543
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.29 E-value=6.5e-12 Score=139.52 Aligned_cols=123 Identities=13% Similarity=0.081 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCC--CCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHH
Q 041246 293 GSPTEIRLNDCSE--INTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGL 370 (637)
Q Consensus 293 ~~l~~L~Ls~c~~--l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l 370 (637)
..++.|+++++.- +.... +..+ ++|++|+|+++. ++... ...+..+++|++|+|+++. ++. +
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~----~~~l--~~L~~L~Ls~n~--l~~~~-----~~~~~~l~~L~~L~Ls~N~-l~~--l 84 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD----ILSL--SKLRILIISHNR--IQYLD-----ISVFKFNQELEYLDLSHNK-LVK--I 84 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH----HTTC--TTCCEEECCSSC--CCEEE-----GGGGTTCTTCCEEECCSSC-CCE--E
T ss_pred ccccEEECCCCcccccChhh----cccc--ccccEEecCCCc--cCCcC-----hHHhhcccCCCEEecCCCc-eee--c
Confidence 6789999998742 22233 3334 899999999886 33211 1145689999999999873 432 1
Q ss_pred HHHHHhCCCCCEEEecCCCCCChhHH-HHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCC--cEEeccCC
Q 041246 371 SKLARSASALQSVNLSQCSLLTNEGI-NLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCL--EVLSVAGI 441 (637)
Q Consensus 371 ~~L~~~~~~L~~L~Ls~c~~ls~~~l-~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L--~~L~Ls~~ 441 (637)
... .+++|++|++++| .++...+ ..+. .++ +|++|++++|. ++.. .+..+++| +.|+++++
T Consensus 85 p~~--~l~~L~~L~L~~N-~l~~~~~p~~~~-~l~-~L~~L~L~~n~-l~~~----~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFN-AFDALPICKEFG-NMS-QLKFLGLSTTH-LEKS----SVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp ECC--CCCCCSEEECCSS-CCSSCCCCGGGG-GCT-TCCEEEEEESS-CCGG----GGGGGTTSCEEEEEEEEC
T ss_pred Ccc--ccCCccEEeccCC-ccccccchhhhc-cCC-cceEEEecCcc-cchh----hccccccceeeEEEeecc
Confidence 111 5789999999997 4443111 1222 243 89999999884 4432 34567777 99988774
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.28 E-value=7.3e-14 Score=159.77 Aligned_cols=278 Identities=13% Similarity=0.095 Sum_probs=149.9
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHH--hccCCCCccEEEecCCCCCCHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVT--QNFSLPALTTISLTGAYQLTDFGL 370 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~--~~~~l~~L~~L~Ls~~~~isd~~l 370 (637)
..++.|++++|..... +...+..+ ++|+.|+|+++.. ++...+...+.. .+..+++|++|+|+++. ++ .+
T Consensus 249 ~~L~~L~L~~n~l~~~--~p~~l~~l--~~L~~L~Ls~n~~-l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~i 320 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTK--LPTFLKAL--PEMQLINVACNRG-ISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TF 320 (636)
T ss_dssp TTCCEEEEECCTTCSS--CCTTTTTC--SSCCEEECTTCTT-SCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SC
T ss_pred CCCCEEEecCCcCCcc--ChHHHhcC--CCCCEEECcCCCC-CccccchHHHHhhhccccCCCCCEEECCCCc-CC--cc
Confidence 5788999998753321 11222333 8999999998763 343112221111 12356889999999874 43 22
Q ss_pred HH--HHHhCCCCCEEEecCCCCCC-hhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCC-CcEEeccCCcCCCH
Q 041246 371 SK--LARSASALQSVNLSQCSLLT-NEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNC-LEVLSVAGIETVDD 446 (637)
Q Consensus 371 ~~--L~~~~~~L~~L~Ls~c~~ls-~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~-L~~L~Ls~~~~l~~ 446 (637)
.. .+..+++|++|++++| .++ .-. .+ ..++ +|+.|++++|. +. .+...+..+++ |++|+++++. +..
T Consensus 321 p~~~~l~~l~~L~~L~L~~N-~l~g~ip--~~-~~l~-~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~ 391 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYN-QLEGKLP--AF-GSEI-KLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNK-LKY 391 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSC-CCEEECC--CC-EEEE-EESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSC-CSS
T ss_pred CchhhhccCCCCCEEeCcCC-cCccchh--hh-CCCC-CCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCc-Ccc
Confidence 22 3456789999999987 343 211 12 1233 78888888873 33 23344667777 8888888753 221
Q ss_pred HHHHHHHH-HcCCCccEEEecCCCCCCHHHHHHHH------hcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEecc
Q 041246 447 YFVTEIVR-AHCLNMRQLVLANCGQLTDRALKFVG------KKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCR 519 (637)
Q Consensus 447 ~~l~~ll~-~~~~~L~~L~Ls~c~~ltd~~l~~l~------~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~ 519 (637)
+...+. ..+++|++|++++|. ++......+. -.+++|+.|++++| .++... ..+...+++|+.|+|++
T Consensus 392 --lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 392 --IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFP-KELFSTGSPLSSINLMG 466 (636)
T ss_dssp --CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCC-THHHHTTCCCSEEECCS
T ss_pred --cchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCC-ccCcCC-HHHHccCCCCCEEECCC
Confidence 111111 112368888888763 4332111111 02457777777774 555211 22334567777777777
Q ss_pred CCCCHHHHHHHHHhc------CCCccEEEcCCCCCCCHHHHHHHH--hCCCCcceEeeecCCCCCHHHHHHHHhcCCCcC
Q 041246 520 NNFSDEALAAFLEVS------GDSLTELSLNHVRGVGLNTALSLA--KCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLR 591 (637)
Q Consensus 520 ~~ltd~~l~~l~~~~------~~~L~~L~Ls~c~~l~~~~l~~l~--~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~ 591 (637)
|.++......+ ... +++|+.|+|+++. ++ .+.... ..+++|+.|+|++|. ++. +..-...+++|+
T Consensus 467 N~l~~i~~~~~-~~~~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~ 539 (636)
T 4eco_A 467 NMLTEIPKNSL-KDENENFKNTYLLTSIDLRFNK-LT--KLSDDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLK 539 (636)
T ss_dssp SCCSBCCSSSS-EETTEECTTGGGCCEEECCSSC-CC--BCCGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCC
T ss_pred CCCCCcCHHHh-ccccccccccCCccEEECcCCc-CC--ccChhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCC
Confidence 77652110000 000 0167777777653 22 111122 256777777777776 543 222223567777
Q ss_pred EEEeecCC
Q 041246 592 LLKLFGCS 599 (637)
Q Consensus 592 ~L~L~~C~ 599 (637)
.|+|++|.
T Consensus 540 ~L~Ls~N~ 547 (636)
T 4eco_A 540 GFGIRNQR 547 (636)
T ss_dssp EEECCSCB
T ss_pred EEECCCCc
Confidence 77775543
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.28 E-value=9.3e-15 Score=170.80 Aligned_cols=131 Identities=19% Similarity=0.152 Sum_probs=67.3
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCC
Q 041246 483 CSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSR 562 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~ 562 (637)
+++|+.|++++| .++.. +......+++|+.|+|++|.++......+ ...++|+.|+|+++..... +......++
T Consensus 393 ~~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~--~p~~~~~l~ 466 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGE--IPQELMYVK 466 (768)
T ss_dssp TCCCCEEECCSS-EEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSC--CCGGGGGCT
T ss_pred cCCccEEECCCC-ccccc-cCHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCcccCc--CCHHHcCCC
Confidence 345555555553 22211 11112456677777777765542211111 1236777777776643211 111233567
Q ss_pred CcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 563 NLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 563 ~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
+|++|+|++|. ++...... ...|++|+.|+|++|. ++...-. ....+++|+.|++.+
T Consensus 467 ~L~~L~L~~N~-l~~~~p~~-l~~l~~L~~L~L~~N~-l~~~~p~----------~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 467 TLETLILDFND-LTGEIPSG-LSNCTNLNWISLSNNR-LTGEIPK----------WIGRLENLAILKLSN 523 (768)
T ss_dssp TCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSC-CCSCCCG----------GGGGCTTCCEEECCS
T ss_pred CceEEEecCCc-ccCcCCHH-HhcCCCCCEEEccCCc-cCCcCCh----------HHhcCCCCCEEECCC
Confidence 77888887776 44222222 3467778888887774 3322111 123467888888765
No 38
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.28 E-value=3.2e-12 Score=121.30 Aligned_cols=93 Identities=10% Similarity=0.105 Sum_probs=64.5
Q ss_pred CCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhC---CCCcceEeeecCCCCCHHHHHHHHhcC
Q 041246 511 SICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKC---SRNLLSLDLSWCRFIKDEALGFIVDNC 587 (637)
Q Consensus 511 ~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~---~~~L~~L~Ls~c~~ltd~~l~~l~~~c 587 (637)
.|+.|+|++|.+++.|+..+ ..+++|++|+|++|..++|.++..++.. +++|++|+|++|.+|||.++..+. .|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM--EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG--TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCCccHHHHHHh--cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 35555555555555555544 2345666666666666666666666542 467888888888888888888876 58
Q ss_pred CCcCEEEeecCCCCChhhh
Q 041246 588 SLLRLLKLFGCSQITNVFL 606 (637)
Q Consensus 588 p~L~~L~L~~C~~ltd~~l 606 (637)
++|++|+|++|+.||+.++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEK 157 (176)
T ss_dssp TTCCEEEEESCTTCCCHHH
T ss_pred CCCCEEECCCCCCCCchHH
Confidence 8888888888888888764
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=5.7e-13 Score=156.78 Aligned_cols=269 Identities=13% Similarity=0.137 Sum_probs=124.9
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCH-H---HHHHHH---HhCCCCCEEEecCCCCCCh
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTD-F---GLSKLA---RSASALQSVNLSQCSLLTN 393 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd-~---~l~~L~---~~~~~L~~L~Ls~c~~ls~ 393 (637)
++|+.|+|+++.. .... +..+.++++|+.|+|+++..++. . .+..+. ..+++|++|+|++| .++.
T Consensus 491 ~~L~~L~Ls~N~l--~~~i-----P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ 562 (876)
T 4ecn_A 491 KDLTDVELYNCPN--MTQL-----PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE 562 (876)
T ss_dssp TTCCEEEEESCTT--CCSC-----CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCB
T ss_pred CCCCEEECcCCCC--CccC-----hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCc
Confidence 6666666666542 1000 01234566666666666543443 1 122221 22346666666665 3331
Q ss_pred h-HHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCC-ccEEEecCCCCC
Q 041246 394 E-GINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLN-MRQLVLANCGQL 471 (637)
Q Consensus 394 ~-~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~-L~~L~Ls~c~~l 471 (637)
- ....+. .++ +|+.|+|++|. +.. +. .+..+++|+.|+++++. +.. +...+ ..+++ |++|+|++|. +
T Consensus 563 ip~~~~l~-~L~-~L~~L~Ls~N~-l~~--lp-~~~~L~~L~~L~Ls~N~-l~~--lp~~l-~~l~~~L~~L~Ls~N~-L 631 (876)
T 4ecn_A 563 FPASASLQ-KMV-KLGLLDCVHNK-VRH--LE-AFGTNVKLTDLKLDYNQ-IEE--IPEDF-CAFTDQVEGLGFSHNK-L 631 (876)
T ss_dssp CCCHHHHT-TCT-TCCEEECTTSC-CCB--CC-CCCTTSEESEEECCSSC-CSC--CCTTS-CEECTTCCEEECCSSC-C
T ss_pred cCChhhhh-cCC-CCCEEECCCCC-ccc--ch-hhcCCCcceEEECcCCc-ccc--chHHH-hhccccCCEEECcCCC-C
Confidence 1 001122 232 56666666653 221 12 44556666666666642 211 10001 12345 6666666653 4
Q ss_pred CHHHHHHHHhcC--CCCCEEEEcCCCCCCHHHHHHHH-----hcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcC
Q 041246 472 TDRALKFVGKKC--SRLCALDLSHLDNLTDATVQYLA-----DGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLN 544 (637)
Q Consensus 472 td~~l~~l~~~c--~~L~~L~L~~c~~itd~~l~~L~-----~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls 544 (637)
+ .+......+ ++|+.|++++| .++... ..+. -.+++|+.|+|++|.++. +.......+++|+.|+|+
T Consensus 632 ~--~lp~~~~~~~~~~L~~L~Ls~N-~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 632 K--YIPNIFNAKSVYVMGSVDFSYN-KIGSEG-RNISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILS 705 (876)
T ss_dssp C--SCCSCCCTTCSSCEEEEECCSS-CTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECC
T ss_pred C--cCchhhhccccCCCCEEECcCC-cCCCcc-ccchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECC
Confidence 3 111111111 23666666664 333210 0000 023467777777776653 211111234677777777
Q ss_pred CCCCCCHHHHHH-HH-------hCCCCcceEeeecCCCCCHHHHHHHHh--cCCCcCEEEeecCCCCChhhhhcccccce
Q 041246 545 HVRGVGLNTALS-LA-------KCSRNLLSLDLSWCRFIKDEALGFIVD--NCSLLRLLKLFGCSQITNVFLNGHSNSMV 614 (637)
Q Consensus 545 ~c~~l~~~~l~~-l~-------~~~~~L~~L~Ls~c~~ltd~~l~~l~~--~cp~L~~L~L~~C~~ltd~~l~~ls~~~l 614 (637)
++. ++. +.. +. ..|++|+.|+|++|. ++ .+..... .+++|+.|+|++|. ++. ++
T Consensus 706 ~N~-L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~--~lp~~l~~~~l~~L~~L~Ls~N~-L~~--lp------- 769 (876)
T 4ecn_A 706 NNL-MTS--IPENSLKPKDGNYKNTYLLTTIDLRFNK-LT--SLSDDFRATTLPYLSNMDVSYNC-FSS--FP------- 769 (876)
T ss_dssp SCC-CSC--CCTTSSSCTTSCCTTGGGCCEEECCSSC-CC--CCCGGGSTTTCTTCCEEECCSSC-CSS--CC-------
T ss_pred CCc-CCc--cChHHhccccccccccCCccEEECCCCC-Cc--cchHHhhhccCCCcCEEEeCCCC-CCc--cc-------
Confidence 653 221 000 11 112367777777775 55 2222222 56777777777763 332 11
Q ss_pred eeecCCCCCCCCeeeccC
Q 041246 615 QIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 615 ~i~g~~~lp~L~~L~l~~ 632 (637)
..+..+++|+.|+++.
T Consensus 770 --~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 770 --TQPLNSSQLKAFGIRH 785 (876)
T ss_dssp --CGGGGCTTCCEEECCC
T ss_pred --hhhhcCCCCCEEECCC
Confidence 1123568888888864
No 40
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.26 E-value=1.5e-14 Score=169.11 Aligned_cols=157 Identities=15% Similarity=0.238 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHH-
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLS- 371 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~- 371 (637)
..+++|+++++..-........+..+ ++|++|+|+++.. +..... ..+.++++|++|+|+++. ++.....
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l--~~L~~L~Ls~n~l--~~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 170 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSC--SGLKFLNVSSNTL--DFPGKV----SGGLKLNSLEVLDLSANS-ISGANVVG 170 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGC--TTCCEEECCSSEE--ECCSSC----CSCCCCTTCSEEECCSSC-CEEETHHH
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCC--CCCCEEECcCCcc--CCcCCH----HHhccCCCCCEEECCCCc-cCCcCChh
Confidence 46778888876421100000123444 7888888887642 110000 012467788888887764 3321111
Q ss_pred -HHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHH
Q 041246 372 -KLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVT 450 (637)
Q Consensus 372 -~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~ 450 (637)
.....+++|++|++++|........ ..++ +|++|++++|...... +.+.++++|++|+++++. +......
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~-~L~~L~Ls~n~l~~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~ 241 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVDV----SRCV-NLEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNK-LSGDFSR 241 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCBC----TTCT-TCCEEECCSSCCCSCC---CBCTTCCSCCEEECCSSC-CCSCHHH
T ss_pred hhhhccCCCCCEEECCCCcccccCCc----ccCC-cCCEEECcCCcCCCCC---cccccCCCCCEEECcCCc-CCCcccH
Confidence 1235567777777777632111111 2233 6777777776332211 115566777777777643 3322111
Q ss_pred HHHHHcCCCccEEEecCCC
Q 041246 451 EIVRAHCLNMRQLVLANCG 469 (637)
Q Consensus 451 ~ll~~~~~~L~~L~Ls~c~ 469 (637)
. + ..+++|++|++++|.
T Consensus 242 ~-l-~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 242 A-I-STCTELKLLNISSNQ 258 (768)
T ss_dssp H-T-TTCSSCCEEECCSSC
T ss_pred H-H-hcCCCCCEEECCCCc
Confidence 1 1 235667777776653
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.26 E-value=7.4e-14 Score=146.12 Aligned_cols=271 Identities=15% Similarity=0.095 Sum_probs=159.5
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|+.|+|+++. ++.-. ...+..+++|++|+|+++. ++...... +..+++|++|++++| .++.- .
T Consensus 52 ~~l~~L~L~~n~--i~~~~-----~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~l-----~ 116 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEIK-----DGDFKNLKNLHTLILINNK-ISKISPGA-FAPLVKLERLYLSKN-QLKEL-----P 116 (330)
T ss_dssp TTCCEEECCSSC--CCCBC-----TTTTTTCTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSS-CCSBC-----C
T ss_pred CCCeEEECCCCc--CCEeC-----hhhhccCCCCCEEECCCCc-CCeeCHHH-hcCCCCCCEEECCCC-cCCcc-----C
Confidence 678888888775 22211 0134578888888888863 33211111 245788899998886 34321 1
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHH-HHHHHHcCCCccEEEecCCCCCCHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFV-TEIVRAHCLNMRQLVLANCGQLTDRALKFV 479 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l-~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l 479 (637)
....++|++|++++|. +... ....+.++++|+.|+++++. +...++ ...+ ..+++|++|++++|. ++...
T Consensus 117 ~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~l~~L~~L~l~~n~-l~~l~---- 187 (330)
T 1xku_A 117 EKMPKTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGTNP-LKSSGIENGAF-QGMKKLSYIRIADTN-ITTIP---- 187 (330)
T ss_dssp SSCCTTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCSSC-CCGGGBCTTGG-GGCTTCCEEECCSSC-CCSCC----
T ss_pred hhhcccccEEECCCCc-cccc-CHhHhcCCccccEEECCCCc-CCccCcChhhc-cCCCCcCEEECCCCc-cccCC----
Confidence 1122378999998873 3322 23456788899999988853 221110 0111 237889999998864 44211
Q ss_pred HhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHh
Q 041246 480 GKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAK 559 (637)
Q Consensus 480 ~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~ 559 (637)
....++|+.|+++++ .++...... ...+++|+.|+|++|.++......+ ...++|++|+|+++. ++ .+.....
T Consensus 188 ~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~--~lp~~l~ 260 (330)
T 1xku_A 188 QGLPPSLTELHLDGN-KITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSL--ANTPHLRELHLNNNK-LV--KVPGGLA 260 (330)
T ss_dssp SSCCTTCSEEECTTS-CCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTG--GGSTTCCEEECCSSC-CS--SCCTTTT
T ss_pred ccccccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCCcCceeChhhc--cCCCCCCEEECCCCc-Cc--cCChhhc
Confidence 012368999999885 565432222 2467889999999888765332222 124789999998864 32 1111234
Q ss_pred CCCCcceEeeecCCCCCHHHHHHHHh-----cCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 560 CSRNLLSLDLSWCRFIKDEALGFIVD-----NCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 560 ~~~~L~~L~Ls~c~~ltd~~l~~l~~-----~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
.+++|++|+|++|. ++..+...+.. ..+.|+.|++.+++. +...+.. ..+..++.|+.+++++
T Consensus 261 ~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~-~~~~i~~--------~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 261 DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV-QYWEIQP--------STFRCVYVRAAVQLGN 328 (330)
T ss_dssp TCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS-CGGGSCG--------GGGTTCCCGGGEEC--
T ss_pred cCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc-cccccCc--------cccccccceeEEEecc
Confidence 67889999999887 65433322211 246788999988863 2222211 1244567888887764
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.25 E-value=1.5e-14 Score=162.17 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=55.7
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|++++|. ++.-. ...+..+ ++|++|+|+++. ++.-. ...+..+++|++|+++++. ++......
T Consensus 52 ~~L~~L~Ls~n~-i~~i~-~~~~~~l--~~L~~L~L~~n~--l~~~~-----~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 119 (570)
T 2z63_A 52 PELQVLDLSRCE-IQTIE-DGAYQSL--SHLSTLILTGNP--IQSLA-----LGAFSGLSSLQKLVAVETN-LASLENFP 119 (570)
T ss_dssp SSCCEEECTTCC-CCEEC-TTTTTTC--TTCCEEECTTCC--CCEEC-----TTTTTTCTTCCEEECTTSC-CCCSTTCS
T ss_pred CCceEEECCCCc-CCccC-cccccCc--hhCCEEeCcCCc--CCccC-----HhhhcCccccccccccccc-cccCCCcc
Confidence 456777777663 22210 1122333 677777777664 22110 0134467777777777753 22111001
Q ss_pred HHHhCCCCCEEEecCCCCCChhH-HHHHHHhhcccceEEeccCCC
Q 041246 373 LARSASALQSVNLSQCSLLTNEG-INLLVKHLKSTLRVLYIDHCQ 416 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~-l~~L~~~~~~~L~~L~Ls~c~ 416 (637)
+..+++|++|++++| .++... ...+ ..++ +|++|++++|.
T Consensus 120 -~~~l~~L~~L~L~~n-~l~~~~lp~~~-~~l~-~L~~L~l~~n~ 160 (570)
T 2z63_A 120 -IGHLKTLKELNVAHN-LIQSFKLPEYF-SNLT-NLEHLDLSSNK 160 (570)
T ss_dssp -CTTCTTCCEEECCSS-CCCCCCCCGGG-GGCT-TCCEEECTTSC
T ss_pred -ccccccccEEecCCC-ccceecChhhh-cccC-CCCEEeCcCCc
Confidence 245678888888876 333211 1112 2233 78888888773
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.24 E-value=1.8e-12 Score=142.43 Aligned_cols=206 Identities=18% Similarity=0.124 Sum_probs=148.5
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|++|+|+++. +++- . .+..+++|++|+|+++. ++... +..+++|++|++++| .++... +
T Consensus 42 ~~L~~L~Ls~n~--l~~~--~-----~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N-~l~~~~---~- 102 (457)
T 3bz5_A 42 ATLTSLDCHNSS--ITDM--T-----GIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSN-KLTNLD---V- 102 (457)
T ss_dssp TTCCEEECCSSC--CCCC--T-----TGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSS-CCSCCC---C-
T ss_pred CCCCEEEccCCC--cccC--h-----hhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCC-CCceee---c-
Confidence 899999999986 3321 1 24589999999999974 44322 356799999999997 455432 2
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG 480 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 480 (637)
..++ +|++|++++| .++... +..+++|++|+++++. ++... + ..+++|++|++++|..++... .
T Consensus 103 ~~l~-~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~-l~~l~----l-~~l~~L~~L~l~~n~~~~~~~----~ 166 (457)
T 3bz5_A 103 TPLT-KLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNT-LTEID----V-SHNTQLTELDCHLNKKITKLD----V 166 (457)
T ss_dssp TTCT-TCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSC-CSCCC----C-TTCTTCCEEECTTCSCCCCCC----C
T ss_pred CCCC-cCCEEECCCC-cCCeec----CCCCCcCCEEECCCCc-cceec----c-ccCCcCCEEECCCCCcccccc----c
Confidence 2344 8999999998 444332 6789999999999853 33321 1 347899999999986555432 2
Q ss_pred hcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhC
Q 041246 481 KKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKC 560 (637)
Q Consensus 481 ~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~ 560 (637)
..+++|+.|+++++ .++... ...+++|+.|++++|.++...+ ..+++|+.|+|+++.- +. +. ...
T Consensus 167 ~~l~~L~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N~l~~~~l-----~~l~~L~~L~Ls~N~l-~~--ip--~~~ 231 (457)
T 3bz5_A 167 TPQTQLTTLDCSFN-KITELD----VSQNKLLNRLNCDTNNITKLDL-----NQNIQLTFLDCSSNKL-TE--ID--VTP 231 (457)
T ss_dssp TTCTTCCEEECCSS-CCCCCC----CTTCTTCCEEECCSSCCSCCCC-----TTCTTCSEEECCSSCC-SC--CC--CTT
T ss_pred ccCCcCCEEECCCC-ccceec----cccCCCCCEEECcCCcCCeecc-----ccCCCCCEEECcCCcc-cc--cC--ccc
Confidence 34799999999995 666532 3568999999999999876432 2348999999998753 32 11 456
Q ss_pred CCCcceEeeecCCCCCH
Q 041246 561 SRNLLSLDLSWCRFIKD 577 (637)
Q Consensus 561 ~~~L~~L~Ls~c~~ltd 577 (637)
+++|+.|++++|. ++.
T Consensus 232 l~~L~~L~l~~N~-l~~ 247 (457)
T 3bz5_A 232 LTQLTYFDCSVNP-LTE 247 (457)
T ss_dssp CTTCSEEECCSSC-CSC
T ss_pred cCCCCEEEeeCCc-CCC
Confidence 8899999999987 554
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.24 E-value=3.4e-12 Score=143.53 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCC--CCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHH
Q 041246 293 GSPTEIRLNDCS--EINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGL 370 (637)
Q Consensus 293 ~~l~~L~Ls~c~--~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l 370 (637)
..++.|+++++. .+....+ ..+ ++|++|+|+++. ++.-. ...+..+++|++|+|+++. ++. +
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~----~~l--~~L~~L~Ls~N~--l~~~~-----~~~~~~l~~L~~L~Ls~N~-l~~--l 115 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDI----SFL--SELRVLRLSHNR--IRSLD-----FHVFLFNQDLEYLDVSHNR-LQN--I 115 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGT----TTC--TTCCEEECCSCC--CCEEC-----TTTTTTCTTCCEEECTTSC-CCE--E
T ss_pred CCcCEEECCCCCccccChhhh----ccC--CCccEEECCCCC--CCcCC-----HHHhCCCCCCCEEECCCCc-CCc--c
Confidence 577888888763 2222222 333 788888888775 22211 1134578888888888864 332 1
Q ss_pred HHHHHhCCCCCEEEecCCCCCChhHH-HHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCC--cEEeccCC
Q 041246 371 SKLARSASALQSVNLSQCSLLTNEGI-NLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCL--EVLSVAGI 441 (637)
Q Consensus 371 ~~L~~~~~~L~~L~Ls~c~~ls~~~l-~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L--~~L~Ls~~ 441 (637)
... .+++|++|++++| .++.-.+ ..+. .++ +|++|+++++ .+... .+..+++| +.|+++++
T Consensus 116 p~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~-~l~-~L~~L~L~~n-~l~~~----~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFN-DFDVLPVCKEFG-NLT-KLTFLGLSAA-KFRQL----DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CSC--CCTTCSEEECCSS-CCSBCCCCGGGG-GCT-TCCEEEEECS-BCCTT----TTGGGTTSCEEEEEEEES
T ss_pred Ccc--ccccCCEEECCCC-CccccCchHhhc-ccC-cccEEecCCC-ccccC----chhhhhhceeeEEEeecc
Confidence 111 5688888888886 3443111 1122 233 7888888886 33332 22344455 88877664
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.24 E-value=4.1e-13 Score=154.24 Aligned_cols=259 Identities=17% Similarity=0.049 Sum_probs=125.2
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|++|+|+++.. +.-. ...+..+++|++|+|+++.. +...... +..+++|++|++++| .++......+.
T Consensus 97 ~~L~~L~L~~n~l--~~~~-----~~~~~~l~~L~~L~Ls~n~l-~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~ 166 (680)
T 1ziw_A 97 TNLTELHLMSNSI--QKIK-----NNPFVKQKNLITLDLSHNGL-SSTKLGT-QVQLENLQELLLSNN-KIQALKSEELD 166 (680)
T ss_dssp TTCSEEECCSSCC--CCCC-----SCTTTTCTTCCEEECCSSCC-SCCCCCS-SSCCTTCCEEECCSS-CCCCBCHHHHG
T ss_pred CCCCEEECCCCcc--CccC-----hhHccccCCCCEEECCCCcc-cccCchh-hcccccCCEEEccCC-cccccCHHHhh
Confidence 6666666666541 1100 00234566666666666532 1111111 134566777777665 33322222221
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHH-HcCCCccEEEecCCCCCCHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVR-AHCLNMRQLVLANCGQLTDRALKFV 479 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~-~~~~~L~~L~Ls~c~~ltd~~l~~l 479 (637)
....++|+.|++++|. +... ....+..+++|+.|++.++. +.......+.. ...++|++|++++|. ++......+
T Consensus 167 ~~~~~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~ 242 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQ-IKEF-SPGCFHAIGRLFGLFLNNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTF 242 (680)
T ss_dssp GGTTCEESEEECTTCC-CCCB-CTTGGGGSSEECEEECTTCC-CHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTTT
T ss_pred ccccccccEEECCCCc-cccc-Chhhhhhhhhhhhhhccccc-cChhhHHHHHHHhhhccccEEEccCCc-ccccChhHh
Confidence 1111267777777662 2211 12234456666666666532 22322222211 124678888887763 433211112
Q ss_pred Hh-cCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHH--
Q 041246 480 GK-KCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALS-- 556 (637)
Q Consensus 480 ~~-~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~-- 556 (637)
.. ..++|+.|++++| .++...... ...+++|+.|+|++|.++......+ ..+++|+.|+++++..........
T Consensus 243 ~~l~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYN-NLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp GGGGGSCCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTT--TTCTTCCEEECTTCBCCC------CC
T ss_pred hccCcCCCCEEECCCC-CcCccCccc-ccCcccccEeeCCCCccCccChhhh--cCCCCccEEeccchhhhccccccccc
Confidence 11 1245888888875 454322112 2457788888888877654321111 124677788777543221111000
Q ss_pred -----HHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCC
Q 041246 557 -----LAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 557 -----l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
....+++|++|++++|. ++.... ..+..|++|++|++++|.
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDND-IPGIKS-NMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCC-BCCCCT-TTTTTCTTCCEEECTTCB
T ss_pred ccChhhcccCCCCCEEECCCCc-cCCCCh-hHhccccCCcEEECCCCc
Confidence 12356778888887775 443211 122457777777777663
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.24 E-value=1.1e-12 Score=148.52 Aligned_cols=81 Identities=20% Similarity=0.072 Sum_probs=44.1
Q ss_pred CCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHH-HHHHHhcC
Q 041246 509 CRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEA-LGFIVDNC 587 (637)
Q Consensus 509 ~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~-l~~l~~~c 587 (637)
+++|+.|++++|.++. +..+ ..++|++|+++++..+... ....+++|++|++++|. ++... +......+
T Consensus 306 ~~~L~~L~l~~n~l~~--lp~~---~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 306 HFKWQSLSIIRCQLKQ--FPTL---DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGT 375 (606)
T ss_dssp TCCCSEEEEESCCCSS--CCCC---CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEECCHHHHCC
T ss_pred cccCCEEEcccccCcc--cccC---CCCccceeeccCCcCccch----hhccCCCCCEEECcCCc-cCCCcchhhhhccC
Confidence 4556666666655522 1111 3466666766665433221 12256777777777775 43221 01223467
Q ss_pred CCcCEEEeecCC
Q 041246 588 SLLRLLKLFGCS 599 (637)
Q Consensus 588 p~L~~L~L~~C~ 599 (637)
++|++|++.+|.
T Consensus 376 ~~L~~L~L~~n~ 387 (606)
T 3vq2_A 376 NSLRHLDLSFNG 387 (606)
T ss_dssp SCCCEEECCSCS
T ss_pred CcccEeECCCCc
Confidence 888888887774
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.23 E-value=3.3e-13 Score=144.54 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=94.7
Q ss_pred CCeeEEEeecCCCC-CChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHH
Q 041246 321 KNLIVLQLDLCGRI-LTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLL 399 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~-l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L 399 (637)
++++.|+++++... +... .+..+++|++|+|+++. +++..... +..+++|++|++++| .++......+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~--------~~~~l~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~ 113 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAA--------LLDSFRQVELLNLNDLQ-IEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVF 113 (390)
T ss_dssp CCCSEEEEESCEESEECTH--------HHHHCCCCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCceEEEecCCchhhCChh--------HhcccccCcEEECCCCc-ccccChhh-ccCCCCcCEEECCCC-CCCcCCHHHh
Confidence 78999999886521 2222 23478999999999874 43321112 256799999999997 4443222222
Q ss_pred HHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHH
Q 041246 400 VKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFV 479 (637)
Q Consensus 400 ~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l 479 (637)
. .++ +|+.|++++|. ++... ...+.++++|++|+++++. +....... + ..+++|++|+++++ .++...
T Consensus 114 ~-~l~-~L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~-~~l~~L~~L~l~~n-~l~~~~---- 181 (390)
T 3o6n_A 114 Q-NVP-LLTVLVLERND-LSSLP-RGIFHNTPKLTTLSMSNNN-LERIEDDT-F-QATTSLQNLQLSSN-RLTHVD---- 181 (390)
T ss_dssp T-TCT-TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTT-T-SSCTTCCEEECCSS-CCSBCC----
T ss_pred c-CCC-CCCEEECCCCc-cCcCC-HHHhcCCCCCcEEECCCCc-cCccChhh-c-cCCCCCCEEECCCC-cCCccc----
Confidence 2 243 89999999983 43211 1234689999999999853 22211111 1 23789999999987 455432
Q ss_pred HhcCCCCCEEEEcCC
Q 041246 480 GKKCSRLCALDLSHL 494 (637)
Q Consensus 480 ~~~c~~L~~L~L~~c 494 (637)
...+++|+.|+++++
T Consensus 182 ~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 182 LSLIPSLFHANVSYN 196 (390)
T ss_dssp GGGCTTCSEEECCSS
T ss_pred cccccccceeecccc
Confidence 233677777777763
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.22 E-value=4.3e-14 Score=158.49 Aligned_cols=110 Identities=20% Similarity=0.126 Sum_probs=54.8
Q ss_pred hcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhc
Q 041246 507 DGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDN 586 (637)
Q Consensus 507 ~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~ 586 (637)
..+++|+.|++++|.++......+ ..+++|+.|+|++|.. ++..+......+++|++|+|++|. +++..... +..
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l-~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~ 492 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA-FNS 492 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEE-GGGEECSCCTTCTTCCEEECTTSC-CCEECTTT-TTT
T ss_pred hcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcC-ccccchhhhhcccCCCEEECCCCc-cccCChhh-hhc
Confidence 345666666666665433211111 1235666666666531 100011122346667777777665 44332222 235
Q ss_pred CCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 587 CSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 587 cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
+++|++|++++| .++..... ....+++|+.|++.+
T Consensus 493 l~~L~~L~l~~n-~l~~~~~~----------~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 493 LSSLQVLNMASN-QLKSVPDG----------IFDRLTSLQKIWLHT 527 (570)
T ss_dssp CTTCCEEECCSS-CCSCCCTT----------TTTTCTTCCEEECCS
T ss_pred ccCCCEEeCCCC-cCCCCCHH----------HhhcccCCcEEEecC
Confidence 667777777766 34332111 134567788887765
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.21 E-value=5.9e-13 Score=152.27 Aligned_cols=296 Identities=15% Similarity=0.092 Sum_probs=175.1
Q ss_pred CCCcEEEEcCCCCCCHH------------H----HHHHHh--hCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCc
Q 041246 293 GSPTEIRLNDCSEINTD------------D----FTRIFG--ACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPAL 354 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~------------~----l~~l~~--~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L 354 (637)
..+++|+++++. ++.. . +...+. .+ ++|++|+|+++.. .... +..+.++++|
T Consensus 206 ~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l--~~L~~L~L~~n~l--~~~~-----p~~l~~l~~L 275 (636)
T 4eco_A 206 TKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNL--KDLTDVEVYNCPN--LTKL-----PTFLKALPEM 275 (636)
T ss_dssp TTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC--TTCCEEEEECCTT--CSSC-----CTTTTTCSSC
T ss_pred cCCCEEECcCCc-cccccccccccccccchhcccCchhhhhccc--CCCCEEEecCCcC--CccC-----hHHHhcCCCC
Confidence 678899998875 4431 0 111222 34 8899999988762 1110 1134588899
Q ss_pred cEEEecCCCCCCH-HHHHHHHH-----hCCCCCEEEecCCCCCChhH-HHHHHHhhcccceEEeccCCCccchhcHHHHH
Q 041246 355 TTISLTGAYQLTD-FGLSKLAR-----SASALQSVNLSQCSLLTNEG-INLLVKHLKSTLRVLYIDHCQNIDAVSMLPAL 427 (637)
Q Consensus 355 ~~L~Ls~~~~isd-~~l~~L~~-----~~~~L~~L~Ls~c~~ls~~~-l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l 427 (637)
++|+|+++..++. .....+.. .+++|++|++++| .++.-. ...+. .++ +|+.|++++|...... . .+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~-~l~-~L~~L~L~~N~l~g~i--p-~~ 349 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQ-KMK-KLGMLECLYNQLEGKL--P-AF 349 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHT-TCT-TCCEEECCSCCCEEEC--C-CC
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhc-cCC-CCCEEeCcCCcCccch--h-hh
Confidence 9999998754665 32223322 3488999999987 444211 01222 344 7999999888432122 2 55
Q ss_pred hcCCCCcEEeccCCcCCCHHHHHHHHHHcCCC-ccEEEecCCCCCCHHHHHHHHhc--CCCCCEEEEcCCCCCCHHHHHH
Q 041246 428 RKLNCLEVLSVAGIETVDDYFVTEIVRAHCLN-MRQLVLANCGQLTDRALKFVGKK--CSRLCALDLSHLDNLTDATVQY 504 (637)
Q Consensus 428 ~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~-L~~L~Ls~c~~ltd~~l~~l~~~--c~~L~~L~L~~c~~itd~~l~~ 504 (637)
..+++|+.|+++++. +.. +...+ ..+++ |++|++++|. ++. +...... +++|+.|++++| .++......
T Consensus 350 ~~l~~L~~L~L~~N~-l~~--lp~~l-~~l~~~L~~L~Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~ 421 (636)
T 4eco_A 350 GSEIKLASLNLAYNQ-ITE--IPANF-CGFTEQVENLSFAHNK-LKY--IPNIFDAKSVSVMSAIDFSYN-EIGSVDGKN 421 (636)
T ss_dssp EEEEEESEEECCSSE-EEE--CCTTS-EEECTTCCEEECCSSC-CSS--CCSCCCTTCSSCEEEEECCSS-CTTTTTTCS
T ss_pred CCCCCCCEEECCCCc-ccc--ccHhh-hhhcccCcEEEccCCc-Ccc--cchhhhhcccCccCEEECcCC-cCCCcchhh
Confidence 678889999998853 221 11111 23567 9999999874 542 2221111 347999999985 554321111
Q ss_pred HH------hcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHh-------CCCCcceEeeec
Q 041246 505 LA------DGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAK-------CSRNLLSLDLSW 571 (637)
Q Consensus 505 L~------~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~-------~~~~L~~L~Ls~ 571 (637)
+. -.+++|+.|+|++|.++......+ ...++|++|+|+++. ++.. ...+.. .+++|++|+|++
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~l~~L~~L~Ls~N~-l~~i-~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELF--STGSPLSSINLMGNM-LTEI-PKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH--HTTCCCSEEECCSSC-CSBC-CSSSSEETTEECTTGGGCCEEECCS
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHH--ccCCCCCEEECCCCC-CCCc-CHHHhccccccccccCCccEEECcC
Confidence 11 045689999999998773221111 234789999999864 2210 000111 123899999999
Q ss_pred CCCCCHHHHHHHHh--cCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeecc
Q 041246 572 CRFIKDEALGFIVD--NCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVL 631 (637)
Q Consensus 572 c~~ltd~~l~~l~~--~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~ 631 (637)
|. ++ .+..... .+++|+.|+|++|. ++. ++ ..+..+++|+.|+++
T Consensus 498 N~-l~--~lp~~~~~~~l~~L~~L~Ls~N~-l~~--ip---------~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 498 NK-LT--KLSDDFRATTLPYLVGIDLSYNS-FSK--FP---------TQPLNSSTLKGFGIR 544 (636)
T ss_dssp SC-CC--BCCGGGSTTTCTTCCEEECCSSC-CSS--CC---------CGGGGCSSCCEEECC
T ss_pred Cc-CC--ccChhhhhccCCCcCEEECCCCC-CCC--cC---------hhhhcCCCCCEEECC
Confidence 97 66 2322233 78999999999984 443 22 123357899999985
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.21 E-value=2.4e-12 Score=136.05 Aligned_cols=255 Identities=16% Similarity=0.111 Sum_probs=164.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcC
Q 041246 351 LPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKL 430 (637)
Q Consensus 351 l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l 430 (637)
.++|++|+++++. ++...... +..+++|++|++++| .++......+. .++ +|++|++++| .++... ...+.++
T Consensus 51 ~~~L~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~-~L~~L~Ls~n-~l~~~~-~~~~~~l 123 (353)
T 2z80_A 51 TEAVKSLDLSNNR-ITYISNSD-LQRCVNLQALVLTSN-GINTIEEDSFS-SLG-SLEHLDLSYN-YLSNLS-SSWFKPL 123 (353)
T ss_dssp CTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTT-TCT-TCCEEECCSS-CCSSCC-HHHHTTC
T ss_pred cccCcEEECCCCc-CcccCHHH-hccCCCCCEEECCCC-ccCccCHhhcC-CCC-CCCEEECCCC-cCCcCC-HhHhCCC
Confidence 3589999999864 44321111 256899999999997 55543222222 243 8999999998 444321 3447889
Q ss_pred CCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCC
Q 041246 431 NCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCR 510 (637)
Q Consensus 431 ~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~ 510 (637)
++|++|+++++. +........+ ..+++|++|++++|..++......+ ..+++|+.|+++++ .++...... ...++
T Consensus 124 ~~L~~L~L~~n~-l~~l~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~ 198 (353)
T 2z80_A 124 SSLTFLNLLGNP-YKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDAS-DLQSYEPKS-LKSIQ 198 (353)
T ss_dssp TTCSEEECTTCC-CSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET-TCCEECTTT-TTTCS
T ss_pred ccCCEEECCCCC-CcccCchhhh-ccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCC-CcCccCHHH-Hhccc
Confidence 999999999853 2211100011 2478999999999854543222222 34789999999995 555422222 24688
Q ss_pred CCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHH--HHHHHhCCCCcceEeeecCCCCCHHHHHHH---Hh
Q 041246 511 SICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNT--ALSLAKCSRNLLSLDLSWCRFIKDEALGFI---VD 585 (637)
Q Consensus 511 ~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~--l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l---~~ 585 (637)
+|++|++++|.++......+ ...++|+.|+|+++.- +... .......++.++.++|+++. +++..+..+ ..
T Consensus 199 ~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 199 NVSHLILHMKQHILLLEIFV--DVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLN 274 (353)
T ss_dssp EEEEEEEECSCSTTHHHHHH--HHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHH
T ss_pred cCCeecCCCCccccchhhhh--hhcccccEEECCCCcc-ccccccccccccccchhhcccccccc-ccCcchhhhHHHHh
Confidence 99999999999875443322 2348999999998642 2110 01122457789999999997 888776554 35
Q ss_pred cCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 586 NCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 586 ~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
.+++|+.|++++| .++.. .. .-...+++|++|++.+
T Consensus 275 ~l~~L~~L~Ls~N-~l~~i--~~--------~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 275 QISGLLELEFSRN-QLKSV--PD--------GIFDRLTSLQKIWLHT 310 (353)
T ss_dssp TCTTCCEEECCSS-CCCCC--CT--------TTTTTCTTCCEEECCS
T ss_pred cccCCCEEECCCC-CCCcc--CH--------HHHhcCCCCCEEEeeC
Confidence 7999999999998 45532 11 0024578899988875
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.20 E-value=3.7e-12 Score=143.16 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|+++++. ++... ...+..+ ++|++|+|+++. ++. +. .. .+++|++|+|+++. ++...+..
T Consensus 76 ~~L~~L~Ls~N~-l~~~~-~~~~~~l--~~L~~L~Ls~N~--l~~--lp-----~~-~l~~L~~L~Ls~N~-l~~l~~p~ 140 (562)
T 3a79_B 76 SELRVLRLSHNR-IRSLD-FHVFLFN--QDLEYLDVSHNR--LQN--IS-----CC-PMASLRHLDLSFND-FDVLPVCK 140 (562)
T ss_dssp TTCCEEECCSCC-CCEEC-TTTTTTC--TTCCEEECTTSC--CCE--EC-----SC-CCTTCSEEECCSSC-CSBCCCCG
T ss_pred CCccEEECCCCC-CCcCC-HHHhCCC--CCCCEEECCCCc--CCc--cC-----cc-ccccCCEEECCCCC-ccccCchH
Confidence 578999999873 33210 1123333 899999999986 332 11 11 78999999999974 33211112
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCC
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQ 416 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~ 416 (637)
.+..+++|++|+++++ .++...+..+.. . +|+.|++++|.
T Consensus 141 ~~~~l~~L~~L~L~~n-~l~~~~~~~l~~-L--~L~~L~L~~n~ 180 (562)
T 3a79_B 141 EFGNLTKLTFLGLSAA-KFRQLDLLPVAH-L--HLSCILLDLVS 180 (562)
T ss_dssp GGGGCTTCCEEEEECS-BCCTTTTGGGTT-S--CEEEEEEEESS
T ss_pred hhcccCcccEEecCCC-ccccCchhhhhh-c--eeeEEEeeccc
Confidence 2356799999999996 566544433321 1 23888888763
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.19 E-value=9.3e-13 Score=137.25 Aligned_cols=233 Identities=18% Similarity=0.127 Sum_probs=157.3
Q ss_pred ChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCC
Q 041246 336 TENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHC 415 (637)
Q Consensus 336 ~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c 415 (637)
++..+.......+..+++|++|+|+++. ++...... +..+++|++|+|++| .++...- + ..++ +|+.|++++|
T Consensus 18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~--~-~~l~-~L~~L~Ls~n 90 (317)
T 3o53_A 18 TDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAAD-LAPFTKLELLNLSSN-VLYETLD--L-ESLS-TLRTLDLNNN 90 (317)
T ss_dssp CTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHH-HTTCTTCCEEECTTS-CCEEEEE--E-TTCT-TCCEEECCSS
T ss_pred cccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHH-hhCCCcCCEEECCCC-cCCcchh--h-hhcC-CCCEEECcCC
Confidence 3344555555566788999999999974 44322222 366899999999997 4432111 2 2344 8999999998
Q ss_pred CccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCC
Q 041246 416 QNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLD 495 (637)
Q Consensus 416 ~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~ 495 (637)
.++... ..++|++|+++++. +.... ...+++|++|++++| .++......+ ..+++|+.|+++++
T Consensus 91 -~l~~l~------~~~~L~~L~l~~n~-l~~~~-----~~~~~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N- 154 (317)
T 3o53_A 91 -YVQELL------VGPSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN- 154 (317)
T ss_dssp -EEEEEE------ECTTCCEEECCSSC-CSEEE-----ECCCSSCEEEECCSS-CCCSGGGBCT-GGGSSEEEEECTTS-
T ss_pred -cccccc------CCCCcCEEECCCCc-cCCcC-----ccccCCCCEEECCCC-CCCCccchhh-hccCCCCEEECCCC-
Confidence 444322 56899999999853 33221 123688999999987 4654322222 34789999999995
Q ss_pred CCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCC
Q 041246 496 NLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFI 575 (637)
Q Consensus 496 ~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~l 575 (637)
.++......+...+++|+.|+|++|.++... .. ...++|++|+|+++. ++. +..-...+++|+.|+|++|. +
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~--~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~L~~N~-l 226 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQ--VVFAKLKTLDLSSNK-LAF--MGPEFQSAAGVTWISLRNNK-L 226 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CC--CCCTTCCEEECCSSC-CCE--ECGGGGGGTTCSEEECTTSC-C
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCcccc--cc--cccccCCEEECCCCc-CCc--chhhhcccCcccEEECcCCc-c
Confidence 7776545555567899999999999987531 11 125899999999864 322 11114467999999999997 6
Q ss_pred CHHHHHHHHhcCCCcCEEEeecCCCC
Q 041246 576 KDEALGFIVDNCSLLRLLKLFGCSQI 601 (637)
Q Consensus 576 td~~l~~l~~~cp~L~~L~L~~C~~l 601 (637)
+. +......+++|+.|++++|+..
T Consensus 227 ~~--l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 227 VL--IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred cc--hhhHhhcCCCCCEEEccCCCcc
Confidence 63 2222456889999999998543
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.19 E-value=1.4e-13 Score=155.86 Aligned_cols=274 Identities=15% Similarity=0.066 Sum_probs=158.4
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|+++++..-... .+..+ ++|++|+|++|.. +. +. .+ .+++|++|+++++..+...
T Consensus 285 ~~L~~L~l~~~~~~~l~----~l~~~--~~L~~L~l~~n~l--~~--lp-----~~-~l~~L~~L~l~~n~~~~~~---- 344 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLE----DVPKH--FKWQSLSIIRCQL--KQ--FP-----TL-DLPFLKSLTLTMNKGSISF---- 344 (606)
T ss_dssp TTCSEEEEESCCCCCCC----CCCTT--CCCSEEEEESCCC--SS--CC-----CC-CCSSCCEEEEESCSSCEEC----
T ss_pred CCCCEEEecCccchhhh----hcccc--ccCCEEEcccccC--cc--cc-----cC-CCCccceeeccCCcCccch----
Confidence 56777777776422111 12223 6788888887763 11 11 12 6778888888877443322
Q ss_pred HHHhCCCCCEEEecCCCCCChhH-HHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEG-INLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTE 451 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~-l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ 451 (637)
-...+++|++|++++| .++... +......++ +|+.|++++|. +... ...+..+++|+.|+++++..........
T Consensus 345 ~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~-~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTN-SLRHLDLSFNG-AIIM--SANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCS-CCCEEECCSCS-EEEE--CCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred hhccCCCCCEEECcCC-ccCCCcchhhhhccCC-cccEeECCCCc-cccc--hhhccCCCCCCeeECCCCccCCccChhh
Confidence 1135678888888886 443221 011122344 78888888874 3321 2345678888888888753221111011
Q ss_pred HHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHH
Q 041246 452 IVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFL 531 (637)
Q Consensus 452 ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~ 531 (637)
+ ..+++|++|++++|. ++...... ...+++|+.|++++| .++...+......+++|+.|+|++|.++......+
T Consensus 420 -~-~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~- 493 (606)
T 3vq2_A 420 -F-LSLEKLLYLDISYTN-TKIDFDGI-FLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF- 493 (606)
T ss_dssp -T-TTCTTCCEEECTTSC-CEECCTTT-TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-
T ss_pred -h-hccccCCEEECcCCC-CCccchhh-hcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccChhhh-
Confidence 1 236888888888874 43321112 234788888888885 55432222233567888889988888765322222
Q ss_pred HhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCC-CcCEEEeecCCCCCh
Q 041246 532 EVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCS-LLRLLKLFGCSQITN 603 (637)
Q Consensus 532 ~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp-~L~~L~L~~C~~ltd 603 (637)
...++|++|+|+++.-.. . .......+++|++|+|++|. ++..... ...++ +|+.|++.+|+...+
T Consensus 494 -~~l~~L~~L~Ls~N~l~~-~-~~~~~~~l~~L~~L~l~~N~-l~~~p~~--~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 494 -DTLHRLQLLNMSHNNLLF-L-DSSHYNQLYSLSTLDCSFNR-IETSKGI--LQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp -TTCTTCCEEECCSSCCSC-E-EGGGTTTCTTCCEEECTTSC-CCCEESC--GGGSCTTCCEEECCSCCCCCS
T ss_pred -cccccCCEEECCCCcCCC-c-CHHHccCCCcCCEEECCCCc-CcccCHh--HhhhcccCcEEEccCCCcccC
Confidence 234788889888874322 1 11223457888999998887 6522111 34565 588999888765543
No 54
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.18 E-value=1.9e-11 Score=115.93 Aligned_cols=108 Identities=14% Similarity=0.097 Sum_probs=67.1
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCC
Q 041246 458 LNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDS 537 (637)
Q Consensus 458 ~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~ 537 (637)
..|++|++++|. |++.++..+. .|++|+.|+|++|..|||.++..++.. + ..+++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~-~----------------------~~~~~ 115 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQL-E----------------------NLQKS 115 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTC-H----------------------HHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhc-c----------------------cccCC
Confidence 357777777774 7777776663 477777777777777777777666541 0 01234
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHH--HHHHhcCCCcC
Q 041246 538 LTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEAL--GFIVDNCSLLR 591 (637)
Q Consensus 538 L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l--~~l~~~cp~L~ 591 (637)
|++|+|++|..||+.++..+. .+++|++|+|++|+.||+.++ ..+...+|+++
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 555555555556665555554 467777777777777777653 44445566554
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.18 E-value=8.6e-13 Score=149.70 Aligned_cols=126 Identities=19% Similarity=0.113 Sum_probs=84.4
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
.++|+.|+|++|. +++. .. ...+++|+.|+|++| .++...... +..+++|+.|+|++|.++.... . ....+
T Consensus 231 ~~~L~~L~L~~n~-l~~~--~~-l~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~--~-~~~l~ 301 (597)
T 3oja_B 231 NVELTILKLQHNN-LTDT--AW-LLNYPGLVEVDLSYN-ELEKIMYHP-FVKMQRLERLYISNNRLVALNL--Y-GQPIP 301 (597)
T ss_dssp CSCCCEEECCSSC-CCCC--GG-GGGCTTCSEEECCSS-CCCEEESGG-GTTCSSCCEEECTTSCCCEEEC--S-SSCCT
T ss_pred CCCCCEEECCCCC-CCCC--hh-hccCCCCCEEECCCC-ccCCCCHHH-hcCccCCCEEECCCCCCCCCCc--c-cccCC
Confidence 3578888888774 5542 22 345889999999985 665432222 2468899999999998765211 1 12347
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCC
Q 041246 537 SLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 537 ~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
+|+.|+|+++.-.. +......+++|+.|+|++|. ++... ...+++|+.|+|++|+
T Consensus 302 ~L~~L~Ls~N~l~~---i~~~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 302 TLKVLDLSHNHLLH---VERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TCCEEECCSSCCCC---CGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred CCcEEECCCCCCCc---cCcccccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 89999999875332 11112356899999999987 55432 3568899999999885
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.17 E-value=8.3e-14 Score=164.43 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|+|+++. ++... ...+..+ ++|++|+|+++.. ... +....+.++++|++|+|+++. ++.... .
T Consensus 24 ~~l~~LdLs~N~-i~~i~-~~~~~~l--~~L~~LdLs~n~~-~~~-----i~~~~f~~L~~L~~L~Ls~N~-l~~~~p-~ 91 (844)
T 3j0a_A 24 NTTERLLLSFNY-IRTVT-ASSFPFL--EQLQLLELGSQYT-PLT-----IDKEAFRNLPNLRILDLGSSK-IYFLHP-D 91 (844)
T ss_dssp TTCCEEEEESCC-CCEEC-SSSCSSC--CSCSEEEECTTCC-CCE-----ECTTTTSSCTTCCEEECTTCC-CCEECT-T
T ss_pred CCcCEEECCCCc-CCccC-hhHCccc--ccCeEEeCCCCCC-ccc-----cCHHHhcCCCCCCEEECCCCc-CcccCH-h
Confidence 467778887753 22210 0112233 7788888887742 110 000134577888888887763 222111 1
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHH-HHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCC
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINL-LVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGI 441 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~-L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~ 441 (637)
.+..+++|++|+|++| .++...... ....++ +|++|++++|. +........+.++++|++|+++++
T Consensus 92 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~-~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLK-ALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCS-SCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred HccCCcccCEeeCcCC-CCCcccccCccccccC-CCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence 1245677888888876 343211111 011233 78888888773 332222234567788888888774
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.17 E-value=1.1e-13 Score=145.14 Aligned_cols=270 Identities=15% Similarity=0.088 Sum_probs=160.4
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|+.|+|+++. ++.-. ...+..+++|++|+|+++. ++...... +..+++|++|++++| .++.- .
T Consensus 54 ~~l~~L~l~~n~--i~~~~-----~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l-----~ 118 (332)
T 2ft3_A 54 PDTTLLDLQNND--ISELR-----KDDFKGLQHLYALVLVNNK-ISKIHEKA-FSPLRKLQKLYISKN-HLVEI-----P 118 (332)
T ss_dssp TTCCEEECCSSC--CCEEC-----TTTTTTCTTCCEEECCSSC-CCEECGGG-STTCTTCCEEECCSS-CCCSC-----C
T ss_pred CCCeEEECCCCc--CCccC-----HhHhhCCCCCcEEECCCCc-cCccCHhH-hhCcCCCCEEECCCC-cCCcc-----C
Confidence 678888888876 22211 1134588889999998863 43221112 245788999999886 34321 1
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHH-HHHHHcCCCccEEEecCCCCCCHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVT-EIVRAHCLNMRQLVLANCGQLTDRALKFV 479 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~-~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l 479 (637)
....++|++|++++|. +.... ...+..+++|++|+++++. +...++. ..+ ... +|++|++++|. ++.. .
T Consensus 119 ~~~~~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~l-~L~~L~l~~n~-l~~l--~-- 188 (332)
T 2ft3_A 119 PNLPSSLVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAF-DGL-KLNYLRISEAK-LTGI--P-- 188 (332)
T ss_dssp SSCCTTCCEEECCSSC-CCCCC-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSS-CSC-CCSCCBCCSSB-CSSC--C--
T ss_pred ccccccCCEEECCCCc-cCccC-HhHhCCCccCCEEECCCCc-cccCCCCcccc-cCC-ccCEEECcCCC-CCcc--C--
Confidence 1112479999998873 33211 2235678899999998853 2211100 001 112 88889988863 4431 1
Q ss_pred HhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHh
Q 041246 480 GKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAK 559 (637)
Q Consensus 480 ~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~ 559 (637)
....++|+.|+++++ .++......+ ..+++|+.|+|++|.++......+ ...++|++|+|+++. ++. +.....
T Consensus 189 ~~~~~~L~~L~l~~n-~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~--lp~~l~ 261 (332)
T 2ft3_A 189 KDLPETLNELHLDHN-KIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNK-LSR--VPAGLP 261 (332)
T ss_dssp SSSCSSCSCCBCCSS-CCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCTTGG--GGCTTCCEEECCSSC-CCB--CCTTGG
T ss_pred ccccCCCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCCcCCcCChhHh--hCCCCCCEEECCCCc-Cee--cChhhh
Confidence 012368999999884 5554322222 457889999999988765322222 234789999999864 321 112245
Q ss_pred CCCCcceEeeecCCCCCHHHHHHHHhc-----CCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 560 CSRNLLSLDLSWCRFIKDEALGFIVDN-----CSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 560 ~~~~L~~L~Ls~c~~ltd~~l~~l~~~-----cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
.+++|++|+|++|. ++..+...+... .+.|+.|++.+++. +...+.. .....+++|+.|++.+
T Consensus 262 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~-~~~~~~~--------~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 262 DLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPV-PYWEVQP--------ATFRCVTDRLAIQFGN 329 (332)
T ss_dssp GCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSS-CGGGSCG--------GGGTTBCCSTTEEC--
T ss_pred cCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcc-cccccCc--------ccccccchhhhhhccc
Confidence 68899999999987 665443333221 46789999999863 3222211 1234578888888764
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=8.2e-13 Score=146.24 Aligned_cols=237 Identities=16% Similarity=0.075 Sum_probs=159.0
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|+.|+|+++. ++... ...+..+++|++|+|++|. +++.. . +..+++|++|+|++| .++...
T Consensus 34 ~~L~~L~Ls~n~--l~~~~-----~~~~~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l~----- 96 (487)
T 3oja_A 34 WNVKELDLSGNP--LSQIS-----AADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNN-YVQELL----- 96 (487)
T ss_dssp GGCCEEECCSSC--CCCCC-----GGGGTTCTTCCEEECTTSC-CEEEE--E-CTTCTTCCEEECCSS-EEEEEE-----
T ss_pred CCccEEEeeCCc--CCCCC-----HHHHhCCCCCCEEEeeCCC-CCCCc--c-cccCCCCCEEEecCC-cCCCCC-----
Confidence 589999999886 33211 1145689999999999875 32211 1 356799999999997 444321
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG 480 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 480 (637)
. . ++|+.|++++|. ++... ...+++|+.|+++++. ++...... + ..+++|++|+|++| .++......+.
T Consensus 97 ~-~-~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~-~-~~l~~L~~L~Ls~N-~l~~~~~~~l~ 165 (487)
T 3oja_A 97 V-G-PSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNK-ITMLRDLD-E-GCRSRVQYLDLKLN-EIDTVNFAELA 165 (487)
T ss_dssp E-C-TTCCEEECCSSC-CCCEE----ECCCSSCEEEECCSSC-CCSGGGBC-G-GGGSSEEEEECTTS-CCCEEEGGGGG
T ss_pred C-C-CCcCEEECcCCc-CCCCC----ccccCCCCEEECCCCC-CCCCCchh-h-cCCCCCCEEECCCC-CCCCcChHHHh
Confidence 1 1 389999999984 33221 1257899999999853 33221111 1 23689999999987 56655445555
Q ss_pred hcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhC
Q 041246 481 KKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKC 560 (637)
Q Consensus 481 ~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~ 560 (637)
..+++|+.|+|++| .++.. ..+ ..+++|+.|+|++|.++..... + ...++|+.|+|+++. ++. +......
T Consensus 166 ~~l~~L~~L~Ls~N-~l~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~-~--~~l~~L~~L~Ls~N~-l~~--lp~~l~~ 235 (487)
T 3oja_A 166 ASSDTLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSNKLAFMGPE-F--QSAAGVTWISLRNNK-LVL--IEKALRF 235 (487)
T ss_dssp GGTTTCCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSSCCCEECGG-G--GGGTTCSEEECTTSC-CCE--ECTTCCC
T ss_pred hhCCcccEEecCCC-ccccc--ccc-ccCCCCCEEECCCCCCCCCCHh-H--cCCCCccEEEecCCc-Ccc--cchhhcc
Confidence 56899999999995 56543 111 2478999999999988753211 2 134799999999865 331 2222346
Q ss_pred CCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEee
Q 041246 561 SRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLF 596 (637)
Q Consensus 561 ~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~ 596 (637)
+++|+.|+|++|. ++...+..+...++.|+.|.+.
T Consensus 236 l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 236 SQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence 7899999999998 7766666666778888887775
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.13 E-value=2.3e-12 Score=134.74 Aligned_cols=272 Identities=13% Similarity=0.066 Sum_probs=170.0
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|+++++. ++... ...+..+ ++|++|+|+++.. +... ...+..+++|++|+|+++. ++...
T Consensus 52 ~~l~~L~L~~n~-i~~~~-~~~~~~l--~~L~~L~L~~n~l--~~~~-----~~~~~~l~~L~~L~Ls~n~-l~~l~--- 116 (330)
T 1xku_A 52 PDTALLDLQNNK-ITEIK-DGDFKNL--KNLHTLILINNKI--SKIS-----PGAFAPLVKLERLYLSKNQ-LKELP--- 116 (330)
T ss_dssp TTCCEEECCSSC-CCCBC-TTTTTTC--TTCCEEECCSSCC--CCBC-----TTTTTTCTTCCEEECCSSC-CSBCC---
T ss_pred CCCeEEECCCCc-CCEeC-hhhhccC--CCCCEEECCCCcC--CeeC-----HHHhcCCCCCCEEECCCCc-CCccC---
Confidence 467889998863 33210 0113344 8999999998762 2211 1135589999999999874 33111
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEI 452 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l 452 (637)
....++|++|++++| .++......+.. ++ +|+.|++++|...........+..+++|++|+++++. +....
T Consensus 117 -~~~~~~L~~L~l~~n-~l~~~~~~~~~~-l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~---- 187 (330)
T 1xku_A 117 -EKMPKTLQELRVHEN-EITKVRKSVFNG-LN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP---- 187 (330)
T ss_dssp -SSCCTTCCEEECCSS-CCCBBCHHHHTT-CT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC----
T ss_pred -hhhcccccEEECCCC-cccccCHhHhcC-Cc-cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCC----
Confidence 012378999999997 555443333333 44 8999999998542221223456789999999999853 22210
Q ss_pred HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHH
Q 041246 453 VRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLE 532 (637)
Q Consensus 453 l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~ 532 (637)
....++|++|++++| .++......+ ..+++|+.|+++++ .++...... ...+++|+.|+|++|.++.- ...+
T Consensus 188 -~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l--p~~l- 259 (330)
T 1xku_A 188 -QGLPPSLTELHLDGN-KITKVDAASL-KGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNNNKLVKV--PGGL- 259 (330)
T ss_dssp -SSCCTTCSEEECTTS-CCCEECTGGG-TTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCSSCCSSC--CTTT-
T ss_pred -ccccccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCC-cCceeChhh-ccCCCCCCEEECCCCcCccC--Chhh-
Confidence 012479999999987 4654332333 34899999999995 666432222 35689999999999988731 1111
Q ss_pred hcCCCccEEEcCCCCCCCHHHHHHHH-----hCCCCcceEeeecCCCCCHHHH-HHHHhcCCCcCEEEeecC
Q 041246 533 VSGDSLTELSLNHVRGVGLNTALSLA-----KCSRNLLSLDLSWCRFIKDEAL-GFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 533 ~~~~~L~~L~Ls~c~~l~~~~l~~l~-----~~~~~L~~L~Ls~c~~ltd~~l-~~l~~~cp~L~~L~L~~C 598 (637)
...++|++|+|+++. ++......+. ...+.|+.|++++|+ +....+ ...+..++.|+.|+|.++
T Consensus 260 ~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 260 ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 234899999999764 2221111111 124789999999998 543322 123456788999999876
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.11 E-value=3.2e-13 Score=159.39 Aligned_cols=256 Identities=14% Similarity=0.108 Sum_probs=141.0
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|++|+|+++. ++.-. ...+.++++|++|+|+++..+..... ..+..+++|++|+|++| .++......+.
T Consensus 24 ~~l~~LdLs~N~--i~~i~-----~~~~~~l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~ 94 (844)
T 3j0a_A 24 NTTERLLLSFNY--IRTVT-----ASSFPFLEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSS-KIYFLHPDAFQ 94 (844)
T ss_dssp TTCCEEEEESCC--CCEEC-----SSSCSSCCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTC-CCCEECTTSSC
T ss_pred CCcCEEECCCCc--CCccC-----hhHCcccccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCC-cCcccCHhHcc
Confidence 789999999876 32211 11456899999999999854332111 11256899999999997 45433222222
Q ss_pred HhhcccceEEeccCCCccchh-cHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCH---HHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAV-SMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTD---RAL 476 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~-~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd---~~l 476 (637)
.++ +|++|+|++|. +... .-...+.++++|++|+++++.. ........+ ..+++|++|+|+++. ++. ..+
T Consensus 95 -~l~-~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l-~~~~~~~~~-~~L~~L~~L~Ls~N~-i~~~~~~~l 168 (844)
T 3j0a_A 95 -GLF-HLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQI-RSLYLHPSF-GKLNSLKSIDFSSNQ-IFLVCEHEL 168 (844)
T ss_dssp -SCS-SCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCC-CCCCCCGGG-GTCSSCCEEEEESSC-CCCCCSGGG
T ss_pred -CCc-ccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcc-cccccchhH-hhCCCCCEEECCCCc-CCeeCHHHc
Confidence 244 89999999984 3321 1111366899999999998642 221111112 348999999999874 432 233
Q ss_pred HHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCC------CCCEEEeccCCCCHHHHHHHH-------------------
Q 041246 477 KFVGKKCSRLCALDLSHLDNLTDATVQYLADGCR------SICSLKLCRNNFSDEALAAFL------------------- 531 (637)
Q Consensus 477 ~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~------~L~~L~Ls~~~ltd~~l~~l~------------------- 531 (637)
..+.. ++|+.|+++++ .++......+ ..++ .|+.|+|++|.++......+.
T Consensus 169 ~~l~~--~~L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 169 EPLQG--KTLSFFSLAAN-SLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp HHHHH--CSSCCCEECCS-BSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred ccccC--CccceEECCCC-ccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 33321 56777777664 3322100000 1111 266666666644322111110
Q ss_pred -----------------HhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEE
Q 041246 532 -----------------EVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLK 594 (637)
Q Consensus 532 -----------------~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~ 594 (637)
....++|+.|+|+++.- +.. .......+++|+.|+|++|. ++...... +.++++|++|+
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l-~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~ 320 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSL-NSRVFETLKDLKVLNLAYNK-INKIADEA-FYGLDNLQVLN 320 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC-CEE-CSCCSSSCCCCCEEEEESCC-CCEECTTT-TTTCSSCCEEE
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcc-ccc-ChhhhhcCCCCCEEECCCCc-CCCCChHH-hcCCCCCCEEE
Confidence 11125677777766532 110 01112356677777777775 44322111 24567777777
Q ss_pred eecCC
Q 041246 595 LFGCS 599 (637)
Q Consensus 595 L~~C~ 599 (637)
|++|.
T Consensus 321 Ls~N~ 325 (844)
T 3j0a_A 321 LSYNL 325 (844)
T ss_dssp EESCC
T ss_pred CCCCC
Confidence 77763
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.11 E-value=2.3e-12 Score=133.75 Aligned_cols=106 Identities=20% Similarity=0.159 Sum_probs=49.6
Q ss_pred CCCCCEEEEcCCCCCCH--HHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHh-cCCCccEEEcCCCCCCCHHHHHHHHh
Q 041246 483 CSRLCALDLSHLDNLTD--ATVQYLADGCRSICSLKLCRNNFSDEALAAFLEV-SGDSLTELSLNHVRGVGLNTALSLAK 559 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd--~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~-~~~~L~~L~Ls~c~~l~~~~l~~l~~ 559 (637)
+++|+.|++++| .++. .....+...+++|++|+|++|.+++.....+... ..++|++|+|+++. ++. +.. .
T Consensus 196 l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~--lp~--~ 269 (310)
T 4glp_A 196 FPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQ--VPK--G 269 (310)
T ss_dssp SCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCS--CCS--C
T ss_pred CCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCc--hhh--h
Confidence 455555555553 4431 1112233445556666666555543210000000 01456666665543 221 000 0
Q ss_pred CCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 560 CSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 560 ~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
-+++|+.|+|++|. ++.... ...+++|+.|+++++
T Consensus 270 ~~~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 270 LPAKLRVLDLSSNR-LNRAPQ---PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCSCCSCEECCSCC-CCSCCC---TTSCCCCSCEECSST
T ss_pred hcCCCCEEECCCCc-CCCCch---hhhCCCccEEECcCC
Confidence 12577777777776 553211 345677777777776
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.10 E-value=2.4e-12 Score=142.54 Aligned_cols=229 Identities=18% Similarity=0.125 Sum_probs=154.1
Q ss_pred HHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccc
Q 041246 340 IINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNID 419 (637)
Q Consensus 340 l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~ 419 (637)
+...+......+++|++|+|+++. ++...... +..+++|++|+|++| .++...- + ..++ +|+.|+|++| .++
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~--l-~~l~-~L~~L~Ls~N-~l~ 93 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNP-LSQISAAD-LAPFTKLELLNLSSN-VLYETLD--L-ESLS-TLRTLDLNNN-YVQ 93 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSC-CCCCCGGG-GTTCTTCCEEECTTS-CCEEEEE--C-TTCT-TCCEEECCSS-EEE
T ss_pred hHHHHHHhcccCCCccEEEeeCCc-CCCCCHHH-HhCCCCCCEEEeeCC-CCCCCcc--c-ccCC-CCCEEEecCC-cCC
Confidence 333333344566799999999974 43321112 256799999999997 4442111 2 2344 8999999998 444
Q ss_pred hhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCH
Q 041246 420 AVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTD 499 (637)
Q Consensus 420 ~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd 499 (637)
... ..++|++|+++++. +..... ..+++|++|+|++| .++......+ ..+++|+.|+++++ .++.
T Consensus 94 ~l~------~~~~L~~L~L~~N~-l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~ 158 (487)
T 3oja_A 94 ELL------VGPSIETLHAANNN-ISRVSC-----SRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN-EIDT 158 (487)
T ss_dssp EEE------ECTTCCEEECCSSC-CCCEEE-----CCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTS-CCCE
T ss_pred CCC------CCCCcCEEECcCCc-CCCCCc-----cccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCC-CCCC
Confidence 322 45899999999863 332111 23689999999987 4654322222 34789999999994 7776
Q ss_pred HHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHH
Q 041246 500 ATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEA 579 (637)
Q Consensus 500 ~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~ 579 (637)
.....+...+++|+.|+|++|.++... .. ...++|+.|+|+++. ++. +..-...+++|+.|+|++|. ++.
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~--~~l~~L~~L~Ls~N~-l~~--~~~~~~~l~~L~~L~Ls~N~-l~~-- 228 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVK--GQ--VVFAKLKTLDLSSNK-LAF--MGPEFQSAAGVTWISLRNNK-LVL-- 228 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEE--CC--CCCTTCCEEECCSSC-CCE--ECGGGGGGTTCSEEECTTSC-CCE--
T ss_pred cChHHHhhhCCcccEEecCCCcccccc--cc--ccCCCCCEEECCCCC-CCC--CCHhHcCCCCccEEEecCCc-Ccc--
Confidence 545555557899999999999987541 11 135899999999865 332 11113467999999999997 663
Q ss_pred HHHHHhcCCCcCEEEeecCCCC
Q 041246 580 LGFIVDNCSLLRLLKLFGCSQI 601 (637)
Q Consensus 580 l~~l~~~cp~L~~L~L~~C~~l 601 (637)
+......+++|+.|++++|+..
T Consensus 229 lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 229 IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTCCCCTTCCEEECTTCCBC
T ss_pred cchhhccCCCCCEEEcCCCCCc
Confidence 2222456789999999998644
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.08 E-value=1.9e-13 Score=141.27 Aligned_cols=60 Identities=22% Similarity=0.095 Sum_probs=27.3
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHH-HHHHHHhCCCCCEEEecCC
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFG-LSKLARSASALQSVNLSQC 388 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~-l~~L~~~~~~L~~L~Ls~c 388 (637)
++|++|+|+++.. +.-. ...+..+++|++|+|+++. ++..+ .......+++|++|++++|
T Consensus 28 ~~l~~L~L~~n~l--~~i~-----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 28 SSATRLELESNKL--QSLP-----HGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TTCCEEECCSSCC--CCCC-----TTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CCCCEEECCCCcc--CccC-----HhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC
Confidence 4666666666542 1100 0123456666666666642 32110 0001123566666666664
No 64
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.07 E-value=1.6e-11 Score=127.27 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=77.1
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCH-HHHHH--HHhcCCCCCEEEeccCCCCHHH--HHHH
Q 041246 456 HCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTD-ATVQY--LADGCRSICSLKLCRNNFSDEA--LAAF 530 (637)
Q Consensus 456 ~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd-~~l~~--L~~~~~~L~~L~Ls~~~ltd~~--l~~l 530 (637)
.+++|++|+|++|. ++...... ...+++|+.|+++++ .+.. .++.. ....+++|++|+|++|.++..+ ...+
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAFSCEQ-VRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp BCSCCCEEEEECCS-SCCCCTTS-CCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred hccCCCEEEeeCCC-cchhhHHH-hccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 35677777777653 33211111 123667777777774 4332 22211 1135677777777777776321 1111
Q ss_pred HHhcCCCccEEEcCCCCCCCHHHHHHHHh--CCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhc
Q 041246 531 LEVSGDSLTELSLNHVRGVGLNTALSLAK--CSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNG 608 (637)
Q Consensus 531 ~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~--~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ 608 (637)
. ...++|++|+|+++.- +......+.. .+++|++|+|++|. ++. +.. .-+++|+.|+|++| .++.. +
T Consensus 220 ~-~~l~~L~~L~Ls~N~l-~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~--lp~--~~~~~L~~L~Ls~N-~l~~~--~- 288 (310)
T 4glp_A 220 A-AAGVQPHSLDLSHNSL-RATVNPSAPRCMWSSALNSLNLSFAG-LEQ--VPK--GLPAKLRVLDLSSN-RLNRA--P- 288 (310)
T ss_dssp H-HHTCCCSSEECTTSCC-CCCCCSCCSSCCCCTTCCCEECCSSC-CCS--CCS--CCCSCCSCEECCSC-CCCSC--C-
T ss_pred H-hcCCCCCEEECCCCCC-CccchhhHHhccCcCcCCEEECCCCC-CCc--hhh--hhcCCCCEEECCCC-cCCCC--c-
Confidence 1 1236777777776542 2110000111 12577777777776 551 111 11367777777776 34322 1
Q ss_pred ccccceeeecCCCCCCCCeeeccC
Q 041246 609 HSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 609 ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
....+++|+.|++.+
T Consensus 289 ---------~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 289 ---------QPDELPEVDNLTLDG 303 (310)
T ss_dssp ---------CTTSCCCCSCEECSS
T ss_pred ---------hhhhCCCccEEECcC
Confidence 023456777777654
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.06 E-value=8e-11 Score=122.19 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=35.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcC
Q 041246 351 LPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKL 430 (637)
Q Consensus 351 l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l 430 (637)
+++|++|+++++. ++. +.. +..+++|++|++++| .++.... + ..++ +|+.|++++|. +... ..+..+
T Consensus 40 l~~L~~L~l~~~~-i~~--l~~-~~~l~~L~~L~L~~n-~i~~~~~--~-~~l~-~L~~L~L~~n~-l~~~---~~~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTT--IEG-VQYLNNLIGLELKDN-QITDLAP--L-KNLT-KITELELSGNP-LKNV---SAIAGL 106 (308)
T ss_dssp HHTCCEEECTTSC-CCC--CTT-GGGCTTCCEEECCSS-CCCCCGG--G-TTCC-SCCEEECCSCC-CSCC---GGGTTC
T ss_pred cCCcCEEEeeCCC-ccC--chh-hhccCCCCEEEccCC-cCCCChh--H-ccCC-CCCEEEccCCc-CCCc---hhhcCC
Confidence 4566666666653 221 111 234566666666665 3332111 1 2232 56666666552 2221 124445
Q ss_pred CCCcEEeccCC
Q 041246 431 NCLEVLSVAGI 441 (637)
Q Consensus 431 ~~L~~L~Ls~~ 441 (637)
++|++|+++++
T Consensus 107 ~~L~~L~l~~n 117 (308)
T 1h6u_A 107 QSIKTLDLTST 117 (308)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEECCCC
Confidence 55555555553
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.05 E-value=1.8e-12 Score=141.88 Aligned_cols=227 Identities=19% Similarity=0.173 Sum_probs=113.4
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|+.|+|+++. ++.-. ...+.++++|+.|+|+++. ++...... +..+++|++|+|++| .++......+
T Consensus 75 ~~l~~L~L~~n~--i~~~~-----~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~- 143 (452)
T 3zyi_A 75 SNTRYLNLMENN--IQMIQ-----ADTFRHLHHLEVLQLGRNS-IRQIEVGA-FNGLASLNTLELFDN-WLTVIPSGAF- 143 (452)
T ss_dssp TTCSEEECCSSC--CCEEC-----TTTTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSS-CCSBCCTTTS-
T ss_pred CCccEEECcCCc--CceEC-----HHHcCCCCCCCEEECCCCc-cCCcChhh-ccCcccCCEEECCCC-cCCccChhhh-
Confidence 577888887765 22111 1134577788888887753 33211111 245677888888775 3432211111
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG 480 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 480 (637)
..++ +|++|+|++|. +.... ...+.++++|+.|+++++..+....... + ..+++|++|+|++|. ++.. ..+
T Consensus 144 ~~l~-~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~-~~l~~L~~L~L~~n~-l~~~--~~~- 214 (452)
T 3zyi_A 144 EYLS-KLRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGA-F-EGLFNLKYLNLGMCN-IKDM--PNL- 214 (452)
T ss_dssp SSCT-TCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTT-T-TTCTTCCEEECTTSC-CSSC--CCC-
T ss_pred cccC-CCCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChhh-c-cCCCCCCEEECCCCc-cccc--ccc-
Confidence 1233 67777777763 22211 1234567777777777654332211101 1 225677777777653 4321 111
Q ss_pred hcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhC
Q 041246 481 KKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKC 560 (637)
Q Consensus 481 ~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~ 560 (637)
..+++|+.|+|+++ .++...... +..+++|+.|+|++|.++......+ ...++|+.|+|+++. ++.. .......
T Consensus 215 ~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~-~~~~~~~ 288 (452)
T 3zyi_A 215 TPLVGLEELEMSGN-HFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAF--DGLASLVELNLAHNN-LSSL-PHDLFTP 288 (452)
T ss_dssp TTCTTCCEEECTTS-CCSEECGGG-GTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSC-CSCC-CTTSSTT
T ss_pred cccccccEEECcCC-cCcccCccc-ccCccCCCEEEeCCCcCceECHHHh--cCCCCCCEEECCCCc-CCcc-ChHHhcc
Confidence 23566777777763 444321111 2356677777777766553222111 123566666666542 2210 0011234
Q ss_pred CCCcceEeeecCC
Q 041246 561 SRNLLSLDLSWCR 573 (637)
Q Consensus 561 ~~~L~~L~Ls~c~ 573 (637)
+++|+.|+|++|+
T Consensus 289 l~~L~~L~L~~Np 301 (452)
T 3zyi_A 289 LRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEccCCC
Confidence 5666666666654
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.05 E-value=1.7e-11 Score=127.31 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=38.4
Q ss_pred hcCCCCcEEeccCCcCCCHHHHH-HHHHHcCCCccEEEecCCCCCCH--HHHHHHHhcCCCCCEEEEcCCCCCCHHHHHH
Q 041246 428 RKLNCLEVLSVAGIETVDDYFVT-EIVRAHCLNMRQLVLANCGQLTD--RALKFVGKKCSRLCALDLSHLDNLTDATVQY 504 (637)
Q Consensus 428 ~~l~~L~~L~Ls~~~~l~~~~l~-~ll~~~~~~L~~L~Ls~c~~ltd--~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~ 504 (637)
..+++|++|+++++.......+. .+....+++|++|++++| .++. .....+...+++|+.|+++++ .++......
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 247 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAP 247 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCS
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchh
Confidence 35556666666553321111111 110022455555555554 2431 112223333455555555553 333311001
Q ss_pred HHhcCCCCCEEEeccCCCC
Q 041246 505 LADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 505 L~~~~~~L~~L~Ls~~~lt 523 (637)
....+++|+.|+|++|.++
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS
T ss_pred hhhhcCCCCEEECCCCccC
Confidence 1122455555555555544
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.04 E-value=1.6e-12 Score=141.81 Aligned_cols=227 Identities=19% Similarity=0.172 Sum_probs=118.1
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++++.|+|+++.. +.-.. ..+.++++|++|+|+++. ++...... +..+++|++|+|++| .++......+
T Consensus 64 ~~l~~L~L~~n~i--~~~~~-----~~~~~l~~L~~L~Ls~n~-i~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~- 132 (440)
T 3zyj_A 64 TNTRLLNLHENQI--QIIKV-----NSFKHLRHLEILQLSRNH-IRTIEIGA-FNGLANLNTLELFDN-RLTTIPNGAF- 132 (440)
T ss_dssp TTCSEEECCSCCC--CEECT-----TTTSSCSSCCEEECCSSC-CCEECGGG-GTTCSSCCEEECCSS-CCSSCCTTTS-
T ss_pred CCCcEEEccCCcC--CeeCH-----HHhhCCCCCCEEECCCCc-CCccChhh-ccCCccCCEEECCCC-cCCeeCHhHh-
Confidence 5788888887652 21111 134577888888888763 33211111 245678888888876 4432211111
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG 480 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 480 (637)
..++ +|+.|+|++|. +.... ...+..+++|++|+++++..+....... + ..+++|++|+|++|. ++.. ..+
T Consensus 133 ~~l~-~L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~-~~l~~L~~L~L~~n~-l~~~--~~~- 203 (440)
T 3zyj_A 133 VYLS-KLKELWLRNNP-IESIP-SYAFNRIPSLRRLDLGELKRLSYISEGA-F-EGLSNLRYLNLAMCN-LREI--PNL- 203 (440)
T ss_dssp CSCS-SCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTT-T-TTCSSCCEEECTTSC-CSSC--CCC-
T ss_pred hccc-cCceeeCCCCc-ccccC-HHHhhhCcccCEeCCCCCCCcceeCcch-h-hcccccCeecCCCCc-Cccc--ccc-
Confidence 1133 68888887763 22211 1234567777777777654332211111 1 235777777777763 4321 112
Q ss_pred hcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhC
Q 041246 481 KKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKC 560 (637)
Q Consensus 481 ~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~ 560 (637)
..+++|+.|+|+++ .++...... +..+++|+.|+|++|.++......+ ...++|+.|+|+++. ++.. .......
T Consensus 204 ~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~-~~~~~~~ 277 (440)
T 3zyj_A 204 TPLIKLDELDLSGN-HLSAIRPGS-FQGLMHLQKLWMIQSQIQVIERNAF--DNLQSLVEINLAHNN-LTLL-PHDLFTP 277 (440)
T ss_dssp TTCSSCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTCCCCEECTTSS--TTCTTCCEEECTTSC-CCCC-CTTTTSS
T ss_pred CCCcccCEEECCCC-ccCccChhh-hccCccCCEEECCCCceeEEChhhh--cCCCCCCEEECCCCC-CCcc-ChhHhcc
Confidence 23667777777774 554322112 2456777777777776654322221 123567777776643 2210 0112234
Q ss_pred CCCcceEeeecCC
Q 041246 561 SRNLLSLDLSWCR 573 (637)
Q Consensus 561 ~~~L~~L~Ls~c~ 573 (637)
+++|+.|+|++|+
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 5666677666654
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.04 E-value=2.7e-11 Score=125.85 Aligned_cols=201 Identities=15% Similarity=0.146 Sum_probs=99.6
Q ss_pred cceEEeccCCCccchhcHHHH--HhcCCCCcEEeccCCcCCCH--HHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHh
Q 041246 406 TLRVLYIDHCQNIDAVSMLPA--LRKLNCLEVLSVAGIETVDD--YFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGK 481 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~--l~~l~~L~~L~Ls~~~~l~~--~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~ 481 (637)
+|++|++++|. ++... ... +..+++|++|+++++. +.. ..+..+.....++|++|+|++|. ++......+ .
T Consensus 96 ~L~~L~L~~n~-l~~~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~-~ 170 (312)
T 1wwl_A 96 GLQELTLENLE-VTGTA-PPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV-R 170 (312)
T ss_dssp CCCEEEEEEEB-CBSCC-CCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC-C
T ss_pred CccEEEccCCc-ccchh-HHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh-c
Confidence 66666666653 22110 111 2466677777776642 222 12222211113677777777653 433221222 2
Q ss_pred cCCCCCEEEEcCCCCCCH-HHHHHHH--hcCCCCCEEEeccCCCCHHH-HHHHHHhcCCCccEEEcCCCCCCCHHHHHHH
Q 041246 482 KCSRLCALDLSHLDNLTD-ATVQYLA--DGCRSICSLKLCRNNFSDEA-LAAFLEVSGDSLTELSLNHVRGVGLNTALSL 557 (637)
Q Consensus 482 ~c~~L~~L~L~~c~~itd-~~l~~L~--~~~~~L~~L~Ls~~~ltd~~-l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l 557 (637)
.+++|+.|+++++ .++. .++..-. ..+++|+.|+|++|.++..+ +...+....++|++|+|+++. ++.......
T Consensus 171 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 248 (312)
T 1wwl_A 171 VFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPS 248 (312)
T ss_dssp CCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSC
T ss_pred cCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhh
Confidence 3667777777774 4433 2222111 45677777777777776321 111111233677777777653 221100011
Q ss_pred HhCCCCcceEeeecCCCCCHHHHHHHHhc-CCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeeeccC
Q 041246 558 AKCSRNLLSLDLSWCRFIKDEALGFIVDN-CSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQVLE 632 (637)
Q Consensus 558 ~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~-cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~l~~ 632 (637)
...+++|++|+|++|. ++ .+ ... .++|+.|++++| .++.. + . ...+++|+.|++.+
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~--~i---p~~~~~~L~~L~Ls~N-~l~~~--p-----~-----~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LK--QV---PKGLPAKLSVLDLSYN-RLDRN--P-----S-----PDELPQVGNLSLKG 305 (312)
T ss_dssp CCCCTTCCEEECTTSC-CS--SC---CSSCCSEEEEEECCSS-CCCSC--C-----C-----TTTSCEEEEEECTT
T ss_pred hhhcCCCCEEECCCCc-cC--hh---hhhccCCceEEECCCC-CCCCC--h-----h-----HhhCCCCCEEeccC
Confidence 2235677888887776 55 11 111 157788888776 34432 1 0 23456777777664
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.03 E-value=4.4e-12 Score=133.00 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=46.8
Q ss_pred CCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhc
Q 041246 350 SLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRK 429 (637)
Q Consensus 350 ~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~ 429 (637)
..++++.|+|+++. ++. +..-+..+++|++|+|++| .++.- ...+ ..++ +|++|+|++|. +. .+...+.+
T Consensus 79 ~~~~l~~L~L~~n~-l~~--lp~~l~~l~~L~~L~L~~n-~l~~l-p~~~-~~l~-~L~~L~Ls~n~-l~--~lp~~l~~ 148 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQ--FPDQAFRLSHLQHMTIDAA-GLMEL-PDTM-QQFA-GLETLTLARNP-LR--ALPASIAS 148 (328)
T ss_dssp TSTTCCEEEEESSC-CSS--CCSCGGGGTTCSEEEEESS-CCCCC-CSCG-GGGT-TCSEEEEESCC-CC--CCCGGGGG
T ss_pred cccceeEEEccCCC-chh--cChhhhhCCCCCEEECCCC-Cccch-hHHH-hccC-CCCEEECCCCc-cc--cCcHHHhc
Confidence 46778888888863 321 1111233678888888886 34311 0111 2233 67777777763 33 22334566
Q ss_pred CCCCcEEeccCCc
Q 041246 430 LNCLEVLSVAGIE 442 (637)
Q Consensus 430 l~~L~~L~Ls~~~ 442 (637)
+++|++|+++++.
T Consensus 149 l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 149 LNRLRELSIRACP 161 (328)
T ss_dssp CTTCCEEEEEEET
T ss_pred CcCCCEEECCCCC
Confidence 7777777776643
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.03 E-value=4.6e-13 Score=140.30 Aligned_cols=272 Identities=13% Similarity=0.040 Sum_probs=164.3
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|+++++. ++... ...+..+ ++|++|+|+++. ++... ...+..+++|++|+|+++. ++....
T Consensus 54 ~~l~~L~l~~n~-i~~~~-~~~~~~l--~~L~~L~L~~n~--l~~~~-----~~~~~~l~~L~~L~L~~n~-l~~l~~-- 119 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELR-KDDFKGL--QHLYALVLVNNK--ISKIH-----EKAFSPLRKLQKLYISKNH-LVEIPP-- 119 (332)
T ss_dssp TTCCEEECCSSC-CCEEC-TTTTTTC--TTCCEEECCSSC--CCEEC-----GGGSTTCTTCCEEECCSSC-CCSCCS--
T ss_pred CCCeEEECCCCc-CCccC-HhHhhCC--CCCcEEECCCCc--cCccC-----HhHhhCcCCCCEEECCCCc-CCccCc--
Confidence 467889998864 33210 1123334 899999999886 33211 1145689999999999874 331110
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEI 452 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l 452 (637)
...++|++|++++| .++......+ ..++ +|+.|+++++...........+..+ +|+.|+++++. +..-.
T Consensus 120 --~~~~~L~~L~l~~n-~i~~~~~~~~-~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~---- 188 (332)
T 2ft3_A 120 --NLPSSLVELRIHDN-RIRKVPKGVF-SGLR-NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIP---- 188 (332)
T ss_dssp --SCCTTCCEEECCSS-CCCCCCSGGG-SSCS-SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCC----
T ss_pred --cccccCCEEECCCC-ccCccCHhHh-CCCc-cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccC----
Confidence 11378999999997 4443221112 2244 8999999998432111112233445 89999998853 22210
Q ss_pred HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHH
Q 041246 453 VRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLE 532 (637)
Q Consensus 453 l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~ 532 (637)
....++|++|+++++ .++......+ ..+++|+.|+++++ .++...... ...+++|+.|+|++|.++.- ...+
T Consensus 189 -~~~~~~L~~L~l~~n-~i~~~~~~~l-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l--p~~l- 260 (332)
T 2ft3_A 189 -KDLPETLNELHLDHN-KIQAIELEDL-LRYSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDNNKLSRV--PAGL- 260 (332)
T ss_dssp -SSSCSSCSCCBCCSS-CCCCCCTTSS-TTCTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCSSCCCBC--CTTG-
T ss_pred -ccccCCCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCCCcCeec--Chhh-
Confidence 112479999999987 4554322223 34789999999995 665432222 35689999999999988732 1111
Q ss_pred hcCCCccEEEcCCCCCCCHHHHHHHHh-----CCCCcceEeeecCCCCCHHHH-HHHHhcCCCcCEEEeecCC
Q 041246 533 VSGDSLTELSLNHVRGVGLNTALSLAK-----CSRNLLSLDLSWCRFIKDEAL-GFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 533 ~~~~~L~~L~Ls~c~~l~~~~l~~l~~-----~~~~L~~L~Ls~c~~ltd~~l-~~l~~~cp~L~~L~L~~C~ 599 (637)
...++|+.|+|+++. ++......+.. ..++|+.|++++|+ ++...+ ...+..+++|+.|++.+|.
T Consensus 261 ~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 235899999999864 33211111111 24679999999998 442222 2334578999999998875
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.02 E-value=6.4e-12 Score=131.77 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=53.4
Q ss_pred CCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHH
Q 041246 320 KKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLL 399 (637)
Q Consensus 320 ~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L 399 (637)
.++++.|+|+++.. +. +. ..+..+++|++|+|+++. ++ .+...+..+++|++|+|++| .++.- ...+
T Consensus 80 ~~~l~~L~L~~n~l--~~--lp----~~l~~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n-~l~~l-p~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSVPL--PQ--FP----DQAFRLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARN-PLRAL-PASI 146 (328)
T ss_dssp STTCCEEEEESSCC--SS--CC----SCGGGGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESC-CCCCC-CGGG
T ss_pred ccceeEEEccCCCc--hh--cC----hhhhhCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCC-ccccC-cHHH
Confidence 37899999998763 21 10 123368899999999874 33 12222356789999999997 44411 1112
Q ss_pred HHhhcccceEEeccCCCccc
Q 041246 400 VKHLKSTLRVLYIDHCQNID 419 (637)
Q Consensus 400 ~~~~~~~L~~L~Ls~c~~i~ 419 (637)
..++ +|+.|++++|..+.
T Consensus 147 -~~l~-~L~~L~L~~n~~~~ 164 (328)
T 4fcg_A 147 -ASLN-RLRELSIRACPELT 164 (328)
T ss_dssp -GGCT-TCCEEEEEEETTCC
T ss_pred -hcCc-CCCEEECCCCCCcc
Confidence 2344 89999999875443
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.02 E-value=4.7e-10 Score=127.54 Aligned_cols=239 Identities=18% Similarity=0.113 Sum_probs=130.6
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..++.|+++++. ++. +. ..+ ++|++|+|+++. ++. +...+++|++|+|+++. ++.
T Consensus 61 ~~L~~L~L~~N~-l~~--lp---~~l--~~L~~L~Ls~N~--l~~---------lp~~l~~L~~L~Ls~N~-l~~----- 115 (622)
T 3g06_A 61 AHITTLVIPDNN-LTS--LP---ALP--PELRTLEVSGNQ--LTS---------LPVLPPGLLELSIFSNP-LTH----- 115 (622)
T ss_dssp TTCSEEEECSCC-CSC--CC---CCC--TTCCEEEECSCC--CSC---------CCCCCTTCCEEEECSCC-CCC-----
T ss_pred CCCcEEEecCCC-CCC--CC---CcC--CCCCEEEcCCCc--CCc---------CCCCCCCCCEEECcCCc-CCC-----
Confidence 456777777653 332 11 122 677777777665 221 11256677777777653 221
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEI 452 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l 452 (637)
+...+++|+.|++++| .++.- .... ++|++|++++| .++... ..+++|+.|+++++. ++.-.
T Consensus 116 l~~~l~~L~~L~L~~N-~l~~l-----p~~l-~~L~~L~Ls~N-~l~~l~-----~~~~~L~~L~L~~N~-l~~l~---- 177 (622)
T 3g06_A 116 LPALPSGLCKLWIFGN-QLTSL-----PVLP-PGLQELSVSDN-QLASLP-----ALPSELCKLWAYNNQ-LTSLP---- 177 (622)
T ss_dssp CCCCCTTCCEEECCSS-CCSCC-----CCCC-TTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCC----
T ss_pred CCCCCCCcCEEECCCC-CCCcC-----CCCC-CCCCEEECcCC-cCCCcC-----CccCCCCEEECCCCC-CCCCc----
Confidence 0013466777777765 23321 1112 36777777776 332211 134567777776642 22211
Q ss_pred HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHH
Q 041246 453 VRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLE 532 (637)
Q Consensus 453 l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~ 532 (637)
..+++|+.|++++|. ++. +....++|+.|++++| .++. +...+++|+.|+|++|.++...
T Consensus 178 --~~~~~L~~L~Ls~N~-l~~-----l~~~~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N~L~~lp------ 237 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYNN-RLTS-----LPALPSGLKELIVSGNRLTSLP------ 237 (622)
T ss_dssp --CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSS-----CCCCCTTCCEEECCSSCCSCCC------
T ss_pred --ccCCCCcEEECCCCC-CCC-----CCCccchhhEEECcCC-cccc-----cCCCCCCCCEEEccCCccCcCC------
Confidence 235677777777653 432 2223467777777774 4442 1123467888888877766421
Q ss_pred hcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChh
Q 041246 533 VSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNV 604 (637)
Q Consensus 533 ~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~ 604 (637)
...++|+.|+|+++. ++. +-..+++|+.|+|++|. ++ .+...+..+++|+.|+|++|+ ++..
T Consensus 238 ~~l~~L~~L~Ls~N~-L~~-----lp~~~~~L~~L~Ls~N~-L~--~lp~~l~~l~~L~~L~L~~N~-l~~~ 299 (622)
T 3g06_A 238 VLPSELKELMVSGNR-LTS-----LPMLPSGLLSLSVYRNQ-LT--RLPESLIHLSSETTVNLEGNP-LSER 299 (622)
T ss_dssp CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CC--SCCGGGGGSCTTCEEECCSCC-CCHH
T ss_pred CCCCcCcEEECCCCC-CCc-----CCcccccCcEEeCCCCC-CC--cCCHHHhhccccCEEEecCCC-CCCc
Confidence 234678888887753 321 11146778888888776 55 222224567788888888774 4444
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.02 E-value=3.2e-10 Score=128.96 Aligned_cols=211 Identities=23% Similarity=0.147 Sum_probs=98.6
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|+.|+|+++. ++. +...+++|++|+|+++. ++. +...+++|++|+|++| .++.-.
T Consensus 61 ~~L~~L~L~~N~--l~~---------lp~~l~~L~~L~Ls~N~-l~~-----lp~~l~~L~~L~Ls~N-~l~~l~----- 117 (622)
T 3g06_A 61 AHITTLVIPDNN--LTS---------LPALPPELRTLEVSGNQ-LTS-----LPVLPPGLLELSIFSN-PLTHLP----- 117 (622)
T ss_dssp TTCSEEEECSCC--CSC---------CCCCCTTCCEEEECSCC-CSC-----CCCCCTTCCEEEECSC-CCCCCC-----
T ss_pred CCCcEEEecCCC--CCC---------CCCcCCCCCEEEcCCCc-CCc-----CCCCCCCCCEEECcCC-cCCCCC-----
Confidence 456666666654 221 11145566666666653 221 1013456666666665 222210
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG 480 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 480 (637)
... ++|+.|++++|. ++... ..+++|++|+++++. +..- ....++|+.|++++| .++. +.
T Consensus 118 ~~l-~~L~~L~L~~N~-l~~lp-----~~l~~L~~L~Ls~N~-l~~l------~~~~~~L~~L~L~~N-~l~~-----l~ 177 (622)
T 3g06_A 118 ALP-SGLCKLWIFGNQ-LTSLP-----VLPPGLQELSVSDNQ-LASL------PALPSELCKLWAYNN-QLTS-----LP 177 (622)
T ss_dssp CCC-TTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSC-CSCC------CCCCTTCCEEECCSS-CCSC-----CC
T ss_pred CCC-CCcCEEECCCCC-CCcCC-----CCCCCCCEEECcCCc-CCCc------CCccCCCCEEECCCC-CCCC-----Cc
Confidence 011 256666666652 22211 123566666666542 2110 012355666666654 2332 11
Q ss_pred hcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhC
Q 041246 481 KKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKC 560 (637)
Q Consensus 481 ~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~ 560 (637)
..+++|+.|++++| .++. +....++|+.|++++|.++... ...++|+.|+|+++. ++. +...
T Consensus 178 ~~~~~L~~L~Ls~N-~l~~-----l~~~~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~-L~~-----lp~~ 239 (622)
T 3g06_A 178 MLPSGLQELSVSDN-QLAS-----LPTLPSELYKLWAYNNRLTSLP------ALPSGLKELIVSGNR-LTS-----LPVL 239 (622)
T ss_dssp CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSSCC------CCCTTCCEEECCSSC-CSC-----CCCC
T ss_pred ccCCCCcEEECCCC-CCCC-----CCCccchhhEEECcCCcccccC------CCCCCCCEEEccCCc-cCc-----CCCC
Confidence 33556666666663 3432 1112456666666666554211 112556666666542 221 1134
Q ss_pred CCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 561 SRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 561 ~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
+++|+.|+|++|. ++. +...+++|+.|+|++|
T Consensus 240 l~~L~~L~Ls~N~-L~~-----lp~~~~~L~~L~Ls~N 271 (622)
T 3g06_A 240 PSELKELMVSGNR-LTS-----LPMLPSGLLSLSVYRN 271 (622)
T ss_dssp CTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS
T ss_pred CCcCcEEECCCCC-CCc-----CCcccccCcEEeCCCC
Confidence 4566666666664 441 1114556666666665
No 75
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.01 E-value=1.7e-13 Score=142.77 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=87.3
Q ss_pred CCeeEEEeecCCCCCCh--HHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHH
Q 041246 321 KNLIVLQLDLCGRILTE--NVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINL 398 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d--~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~ 398 (637)
.+++.|+|+++.. +. ... ..+..+++|++|+|+++..+....... +..+++|++|++++| .++......
T Consensus 50 ~~l~~L~L~~~~l--~~~~~~~-----~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNL--PKPYPIP-----SSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCC--SSCEECC-----GGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGG
T ss_pred ceEEEEECCCCCc--cCCcccC-----hhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHH
Confidence 4678888877652 21 100 134467888888887422222111111 245677888888775 333211111
Q ss_pred HHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCC-CccEEEecCCCCCCHHHHH
Q 041246 399 LVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCL-NMRQLVLANCGQLTDRALK 477 (637)
Q Consensus 399 L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~-~L~~L~Ls~c~~ltd~~l~ 477 (637)
+. .++ +|++|++++|. +... +...+..+++|++|+++++. +....... + ..++ .|++|+++++. ++.....
T Consensus 121 ~~-~l~-~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l-~~l~~~L~~L~L~~N~-l~~~~~~ 192 (313)
T 1ogq_A 121 LS-QIK-TLVTLDFSYNA-LSGT-LPPSISSLPNLVGITFDGNR-ISGAIPDS-Y-GSFSKLFTSMTISRNR-LTGKIPP 192 (313)
T ss_dssp GG-GCT-TCCEEECCSSE-EESC-CCGGGGGCTTCCEEECCSSC-CEEECCGG-G-GCCCTTCCEEECCSSE-EEEECCG
T ss_pred Hh-CCC-CCCEEeCCCCc-cCCc-CChHHhcCCCCCeEECcCCc-ccCcCCHH-H-hhhhhcCcEEECcCCe-eeccCCh
Confidence 21 133 67777777763 2211 12344567777777776642 21100001 1 1133 67777776652 3211111
Q ss_pred HHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC
Q 041246 478 FVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 478 ~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
.+.. ++ |+.|+++++ .++... ......+++|+.|+|++|.++
T Consensus 193 ~~~~-l~-L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 193 TFAN-LN-LAFVDLSRN-MLEGDA-SVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp GGGG-CC-CSEEECCSS-EEEECC-GGGCCTTSCCSEEECCSSEEC
T ss_pred HHhC-Cc-ccEEECcCC-cccCcC-CHHHhcCCCCCEEECCCCcee
Confidence 1222 33 666666663 333211 112234566666666666554
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.01 E-value=1e-11 Score=135.79 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=146.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcC
Q 041246 351 LPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKL 430 (637)
Q Consensus 351 l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l 430 (637)
.++|++|+|+++. ++...... +..+++|++|+|++| .++......+. .++ +|+.|+|++|. ++... ...+..+
T Consensus 74 ~~~l~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~-~l~-~L~~L~L~~n~-l~~~~-~~~~~~l 146 (452)
T 3zyi_A 74 PSNTRYLNLMENN-IQMIQADT-FRHLHHLEVLQLGRN-SIRQIEVGAFN-GLA-SLNTLELFDNW-LTVIP-SGAFEYL 146 (452)
T ss_dssp CTTCSEEECCSSC-CCEECTTT-TTTCTTCCEEECCSS-CCCEECTTTTT-TCT-TCCEEECCSSC-CSBCC-TTTSSSC
T ss_pred CCCccEEECcCCc-CceECHHH-cCCCCCCCEEECCCC-ccCCcChhhcc-Ccc-cCCEEECCCCc-CCccC-hhhhccc
Confidence 3689999999864 43221112 256799999999997 55543222222 243 89999999984 33221 2235678
Q ss_pred CCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCC
Q 041246 431 NCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCR 510 (637)
Q Consensus 431 ~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~ 510 (637)
++|++|+++++. +....... + ..+++|++|+|++|..++...... ...+++|+.|++++| .++.. .. ...++
T Consensus 147 ~~L~~L~L~~N~-l~~~~~~~-~-~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n-~l~~~--~~-~~~l~ 218 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIPSYA-F-NRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMC-NIKDM--PN-LTPLV 218 (452)
T ss_dssp TTCCEEECCSCC-CCEECTTT-T-TTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTS-CCSSC--CC-CTTCT
T ss_pred CCCCEEECCCCC-cceeCHhH-H-hcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCC-ccccc--cc-ccccc
Confidence 999999998853 32211101 1 247899999999887665432222 234789999999985 55532 12 24678
Q ss_pred CCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCc
Q 041246 511 SICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLL 590 (637)
Q Consensus 511 ~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L 590 (637)
+|+.|+|++|.++......+ ...++|+.|+|+++.- +... ......+++|+.|+|++|. ++.... ..+..+++|
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L 292 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQV-SLIE-RNAFDGLASLVELNLAHNN-LSSLPH-DLFTPLRYL 292 (452)
T ss_dssp TCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSSC-CSCCCT-TSSTTCTTC
T ss_pred cccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcC-ceEC-HHHhcCCCCCCEEECCCCc-CCccCh-HHhccccCC
Confidence 99999999998775322222 2347899999988642 2110 1123467899999999886 653222 223468899
Q ss_pred CEEEeecCCCCCh
Q 041246 591 RLLKLFGCSQITN 603 (637)
Q Consensus 591 ~~L~L~~C~~ltd 603 (637)
+.|+|.+++-.-|
T Consensus 293 ~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 293 VELHLHHNPWNCD 305 (452)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEEccCCCcCCC
Confidence 9999988764433
No 77
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.01 E-value=1.1e-12 Score=135.53 Aligned_cols=232 Identities=18% Similarity=0.111 Sum_probs=133.5
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhH--HHHHHHhhcccceEEeccCCCccchhcHHHHHhc
Q 041246 352 PALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEG--INLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRK 429 (637)
Q Consensus 352 ~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~--l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~ 429 (637)
++|++|+|+++. ++... ...+..+++|++|+|++| .++..+ ...+. .++ +|+.|++++|. +.. +...+..
T Consensus 28 ~~l~~L~L~~n~-l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~-~~~-~L~~L~Ls~n~-i~~--l~~~~~~ 99 (306)
T 2z66_A 28 SSATRLELESNK-LQSLP-HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDF-GTT-SLKYLDLSFNG-VIT--MSSNFLG 99 (306)
T ss_dssp TTCCEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSS-CCCEEEEEEHHHH-SCS-CCCEEECCSCS-EEE--EEEEEET
T ss_pred CCCCEEECCCCc-cCccC-HhHhhccccCCEEECCCC-ccCcccCcccccc-ccc-ccCEEECCCCc-ccc--ChhhcCC
Confidence 578888888863 33211 112355788888888886 454321 11222 233 78888888874 322 1222557
Q ss_pred CCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcC
Q 041246 430 LNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGC 509 (637)
Q Consensus 430 l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~ 509 (637)
+++|++|+++++. +........+ ..+++|++|++++|. ++.... .....+++|+.|+++++ .++...+......+
T Consensus 100 l~~L~~L~l~~n~-l~~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l 174 (306)
T 2z66_A 100 LEQLEHLDFQHSN-LKQMSEFSVF-LSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGN-SFQENFLPDIFTEL 174 (306)
T ss_dssp CTTCCEEECTTSE-EESSTTTTTT-TTCTTCCEEECTTSC-CEECST-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTC
T ss_pred CCCCCEEECCCCc-ccccccchhh-hhccCCCEEECCCCc-CCccch-hhcccCcCCCEEECCCC-ccccccchhHHhhC
Confidence 8888888888752 1111100011 236788888888763 432211 12234788888888885 44432122233467
Q ss_pred CCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcC-C
Q 041246 510 RSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNC-S 588 (637)
Q Consensus 510 ~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c-p 588 (637)
++|+.|+|++|.++......+ ...++|++|+|+++.-.. ... .....+++|+.|+|++|. ++......+. .+ +
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~-~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~~~~ 248 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFS-LDT-FPYKCLNSLQVLDYSLNH-IMTSKKQELQ-HFPS 248 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCSB-CCS-GGGTTCTTCCEEECTTSC-CCBCSSSSCC-CCCT
T ss_pred cCCCEEECCCCCcCCcCHHHh--cCCCCCCEEECCCCccCc-cCh-hhccCcccCCEeECCCCC-CcccCHHHHH-hhhc
Confidence 888888888888765322222 123788888888764221 100 113457888888888886 5543333332 34 4
Q ss_pred CcCEEEeecCCCCC
Q 041246 589 LLRLLKLFGCSQIT 602 (637)
Q Consensus 589 ~L~~L~L~~C~~lt 602 (637)
+|+.|+|++|+--.
T Consensus 249 ~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 249 SLAFLNLTQNDFAC 262 (306)
T ss_dssp TCCEEECTTCCEEC
T ss_pred cCCEEEccCCCeec
Confidence 88888888876443
No 78
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.01 E-value=6.5e-12 Score=136.87 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=43.3
Q ss_pred cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSR 485 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~ 485 (637)
+|+.|++++|..+.... ...+..+++|++|+++++. +.... . + ..+++|++|+|++| .++......+ ..+++
T Consensus 161 ~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~--~-~-~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~ 232 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCN-LREIP--N-L-TPLIKLDELDLSGN-HLSAIRPGSF-QGLMH 232 (440)
T ss_dssp TCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSC-CSSCC--C-C-TTCSSCCEEECTTS-CCCEECTTTT-TTCTT
T ss_pred ccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCc-Ccccc--c-c-CCCcccCEEECCCC-ccCccChhhh-ccCcc
Confidence 45555555543332211 1123345555555555532 11100 0 0 12445555555554 2332211111 22455
Q ss_pred CCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC
Q 041246 486 LCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 486 L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
|+.|+++++ .++...... +..+++|+.|+|++|+++
T Consensus 233 L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 233 LQKLWMIQS-QIQVIERNA-FDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp CCEEECTTC-CCCEECTTS-STTCTTCCEEECTTSCCC
T ss_pred CCEEECCCC-ceeEEChhh-hcCCCCCCEEECCCCCCC
Confidence 555555552 333221111 123455555555555544
No 79
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.00 E-value=1.3e-11 Score=126.14 Aligned_cols=207 Identities=17% Similarity=0.088 Sum_probs=101.9
Q ss_pred CCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhc
Q 041246 350 SLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRK 429 (637)
Q Consensus 350 ~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~ 429 (637)
..++|++|+|+++. ++...... +..+++|++|+|++| .++......+.. ++ +|++|++++|..+.... ...+..
T Consensus 30 ~~~~l~~L~l~~n~-i~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~~~-l~-~L~~L~l~~n~~l~~~~-~~~~~~ 103 (285)
T 1ozn_A 30 IPAASQRIFLHGNR-ISHVPAAS-FRACRNLTILWLHSN-VLARIDAAAFTG-LA-LLEQLDLSDNAQLRSVD-PATFHG 103 (285)
T ss_dssp CCTTCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCCEECTTTTTT-CT-TCCEEECCSCTTCCCCC-TTTTTT
T ss_pred CCCCceEEEeeCCc-CCccCHHH-cccCCCCCEEECCCC-ccceeCHhhcCC-cc-CCCEEeCCCCCCccccC-HHHhcC
Confidence 34678888888863 33221111 245678888888876 444322222222 33 68888887774343221 223456
Q ss_pred CCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcC
Q 041246 430 LNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGC 509 (637)
Q Consensus 430 l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~ 509 (637)
+++|++|+++++. +....... + ..+++|++|+++++. ++...... ...+++|+.|+++++ .++...... ...+
T Consensus 104 l~~L~~L~l~~n~-l~~~~~~~-~-~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l 176 (285)
T 1ozn_A 104 LGRLHTLHLDRCG-LQELGPGL-F-RGLAALQYLYLQDNA-LQALPDDT-FRDLGNLTHLFLHGN-RISSVPERA-FRGL 176 (285)
T ss_dssp CTTCCEEECTTSC-CCCCCTTT-T-TTCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSS-CCCEECTTT-TTTC
T ss_pred CcCCCEEECCCCc-CCEECHhH-h-hCCcCCCEEECCCCc-ccccCHhH-hccCCCccEEECCCC-cccccCHHH-hcCc
Confidence 7777777777642 22110000 1 225677777777653 33221111 123566777777763 444321111 2346
Q ss_pred CCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 510 RSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 510 ~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
++|+.|+|++|.++......+ ...++|+.|+|+++. ++.. .......+++|++|+|++|+
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPHAF--RDLGRLMTLYLFANN-LSAL-PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSC-CSCC-CHHHHTTCTTCCEEECCSSC
T ss_pred cccCEEECCCCcccccCHhHc--cCcccccEeeCCCCc-CCcC-CHHHcccCcccCEEeccCCC
Confidence 667777777666554321111 112455555555542 1111 01122345555555555554
No 80
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.96 E-value=4.2e-13 Score=139.76 Aligned_cols=226 Identities=17% Similarity=0.127 Sum_probs=143.8
Q ss_pred CCccEEEecCCCCCCH-HHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcC
Q 041246 352 PALTTISLTGAYQLTD-FGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKL 430 (637)
Q Consensus 352 ~~L~~L~Ls~~~~isd-~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l 430 (637)
.+++.|+|+++. ++. ..+...+..+++|++|+++++..++......+. .++ +|++|++++|..... +...+.++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~-~L~~L~Ls~n~l~~~--~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLT-QLHYLYITHTNVSGA--IPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCT-TCSEEEEEEECCEEE--CCGGGGGC
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCC-CCCEEECcCCeeCCc--CCHHHhCC
Confidence 679999999974 332 011122356899999999953344322222222 244 899999999843212 23456789
Q ss_pred CCCcEEeccCCcCC--CHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCC-CCCEEEEcCCCCCCHHHHHHHHh
Q 041246 431 NCLEVLSVAGIETV--DDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCS-RLCALDLSHLDNLTDATVQYLAD 507 (637)
Q Consensus 431 ~~L~~L~Ls~~~~l--~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~-~L~~L~L~~c~~itd~~l~~L~~ 507 (637)
++|++|+++++... .... + ..+++|++|++++|. ++......+.. ++ +|+.|+++++ .++......+ .
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~----~-~~l~~L~~L~L~~N~-l~~~~p~~l~~-l~~~L~~L~L~~N-~l~~~~~~~~-~ 195 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPS----I-SSLPNLVGITFDGNR-ISGAIPDSYGS-FSKLFTSMTISRN-RLTGKIPPTF-A 195 (313)
T ss_dssp TTCCEEECCSSEEESCCCGG----G-GGCTTCCEEECCSSC-CEEECCGGGGC-CCTTCCEEECCSS-EEEEECCGGG-G
T ss_pred CCCCEEeCCCCccCCcCChH----H-hcCCCCCeEECcCCc-ccCcCCHHHhh-hhhcCcEEECcCC-eeeccCChHH-h
Confidence 99999999986321 1111 1 237999999999874 54322223333 55 8999999995 5542111122 3
Q ss_pred cCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcC
Q 041246 508 GCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNC 587 (637)
Q Consensus 508 ~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c 587 (637)
.++ |+.|+|++|.++......+ ...++|+.|+|+++...... .....+++|++|+|++|. ++...... +..+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~p~~-l~~l 267 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDL---GKVGLSKNLNGLDLRNNR-IYGTLPQG-LTQL 267 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBG---GGCCCCTTCCEEECCSSC-CEECCCGG-GGGC
T ss_pred CCc-ccEEECcCCcccCcCCHHH--hcCCCCCEEECCCCceeeec---CcccccCCCCEEECcCCc-ccCcCChH-HhcC
Confidence 344 9999999998654322111 23489999999987532211 113467999999999998 65332222 3578
Q ss_pred CCcCEEEeecCC
Q 041246 588 SLLRLLKLFGCS 599 (637)
Q Consensus 588 p~L~~L~L~~C~ 599 (637)
++|+.|+|++|.
T Consensus 268 ~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 268 KFLHSLNVSFNN 279 (313)
T ss_dssp TTCCEEECCSSE
T ss_pred cCCCEEECcCCc
Confidence 999999999984
No 81
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=3.1e-09 Score=112.84 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=46.3
Q ss_pred CCCCCEEEeccCCCCHHHHHHHHHh-cCCCccEEEcCCCCCCCHHHHHHHH---hCCCCcceEeeecCCCCCHHHHHHHH
Q 041246 509 CRSICSLKLCRNNFSDEALAAFLEV-SGDSLTELSLNHVRGVGLNTALSLA---KCSRNLLSLDLSWCRFIKDEALGFIV 584 (637)
Q Consensus 509 ~~~L~~L~Ls~~~ltd~~l~~l~~~-~~~~L~~L~Ls~c~~l~~~~l~~l~---~~~~~L~~L~Ls~c~~ltd~~l~~l~ 584 (637)
+|+|+.|+|+.|.+++.+...+... ..++|++|+|+. ..+++.++..+. ..+++|+.|+|++|. |++.++..+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~ 328 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQ 328 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHH
Confidence 4445555554444444433332211 123455555543 234444433332 346788888888886 8888888777
Q ss_pred hcCCCcCEEEeecCC
Q 041246 585 DNCSLLRLLKLFGCS 599 (637)
Q Consensus 585 ~~cp~L~~L~L~~C~ 599 (637)
..+ ...++++...
T Consensus 329 ~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHC--CSEEECCSBC
T ss_pred HHc--CCEEEecCCc
Confidence 544 4556666543
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.95 E-value=5.2e-10 Score=116.06 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=51.6
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|+.|+++++.. ++ +. .+..+++|++|+|+++. +++... +..+++|++|++++|. ++... .+.
T Consensus 41 ~~L~~L~l~~~~i--~~--l~-----~~~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~n~-l~~~~--~~~ 104 (308)
T 1h6u_A 41 DGITTLSAFGTGV--TT--IE-----GVQYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNP-LKNVS--AIA 104 (308)
T ss_dssp HTCCEEECTTSCC--CC--CT-----TGGGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCC-CSCCG--GGT
T ss_pred CCcCEEEeeCCCc--cC--ch-----hhhccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccCCc-CCCch--hhc
Confidence 5677777776652 21 00 12356777777777653 322111 3456777777777753 33321 121
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCC
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGI 441 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~ 441 (637)
.++ +|+.|++++|. ++.. ..+..+++|++|+++++
T Consensus 105 -~l~-~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 105 -GLQ-SIKTLDLTSTQ-ITDV---TPLAGLSNLQVLYLDLN 139 (308)
T ss_dssp -TCT-TCCEEECTTSC-CCCC---GGGTTCTTCCEEECCSS
T ss_pred -CCC-CCCEEECCCCC-CCCc---hhhcCCCCCCEEECCCC
Confidence 133 67777777763 3321 12455666666666654
No 83
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=3.3e-09 Score=112.65 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=33.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHh--cCCCCCEEEEcCCCCCCHHHHHHHH---hcCCCCCEEEeccCCCCHHHHHHH
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGK--KCSRLCALDLSHLDNLTDATVQYLA---DGCRSICSLKLCRNNFSDEALAAF 530 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~--~c~~L~~L~L~~c~~itd~~l~~L~---~~~~~L~~L~Ls~~~ltd~~l~~l 530 (637)
+|+|++|.|.+| .+++.....++. .+|+|+.|+|+. +.+++.+...+. ..+++|+.|+|++|.+++.++..+
T Consensus 251 ~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 251 FPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp CTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred CCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 455555555544 344433333332 234555555544 345554444443 224455555555555555555444
No 84
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.92 E-value=3.6e-11 Score=122.88 Aligned_cols=206 Identities=17% Similarity=0.125 Sum_probs=117.7
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
++|++|+|+++. ++.-. ...+..+++|++|+|+++. ++...... +..+++|++|++++|..++......+.
T Consensus 32 ~~l~~L~l~~n~--i~~~~-----~~~~~~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFLHGNR--ISHVP-----AASFRACRNLTILWLHSNV-LARIDAAA-FTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp TTCSEEECTTSC--CCEEC-----TTTTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCceEEEeeCCc--CCccC-----HHHcccCCCCCEEECCCCc-cceeCHhh-cCCccCCCEEeCCCCCCccccCHHHhc
Confidence 577788877765 22211 0134577788888887753 33211111 244677888888876434432222222
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG 480 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 480 (637)
. ++ +|++|++++|. ++.. ....+..+++|++|+++++. +....... + ..+++|++|++++| .++......+
T Consensus 103 ~-l~-~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~-~~l~~L~~L~l~~n-~l~~~~~~~~- 173 (285)
T 1ozn_A 103 G-LG-RLHTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNA-LQALPDDT-F-RDLGNLTHLFLHGN-RISSVPERAF- 173 (285)
T ss_dssp T-CT-TCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTT-T-TTCTTCCEEECCSS-CCCEECTTTT-
T ss_pred C-Cc-CCCEEECCCCc-CCEE-CHhHhhCCcCCCEEECCCCc-ccccCHhH-h-ccCCCccEEECCCC-cccccCHHHh-
Confidence 2 33 78888888773 3221 12335677888888887742 22111000 1 23678888888876 4543221122
Q ss_pred hcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCC
Q 041246 481 KKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRG 548 (637)
Q Consensus 481 ~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~ 548 (637)
..+++|+.|+++++ .++......+ ..+++|+.|+|++|.+++.....+ ...++|+.|+|+++.-
T Consensus 174 ~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 174 RGLHSLDRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNPW 237 (285)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSCE
T ss_pred cCccccCEEECCCC-cccccCHhHc-cCcccccEeeCCCCcCCcCCHHHc--ccCcccCEEeccCCCc
Confidence 34788888888884 5554322222 457888888888888765433333 2347888888887653
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.82 E-value=9.3e-10 Score=120.60 Aligned_cols=237 Identities=15% Similarity=0.130 Sum_probs=131.0
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHH
Q 041246 294 SPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKL 373 (637)
Q Consensus 294 ~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L 373 (637)
.+++|+++++. ++. +.. +..+ ++|++|+++++. ++. +....++|++|+++++. ++. +..
T Consensus 132 ~L~~L~L~~n~-l~~--lp~-~~~l--~~L~~L~l~~N~--l~~---------lp~~~~~L~~L~L~~n~-l~~--l~~- 190 (454)
T 1jl5_A 132 LLEYLGVSNNQ-LEK--LPE-LQNS--SFLKIIDVDNNS--LKK---------LPDLPPSLEFIAAGNNQ-LEE--LPE- 190 (454)
T ss_dssp TCCEEECCSSC-CSS--CCC-CTTC--TTCCEEECCSSC--CSC---------CCCCCTTCCEEECCSSC-CSS--CCC-
T ss_pred CCCEEECcCCC-CCC--Ccc-cCCC--CCCCEEECCCCc--Ccc---------cCCCcccccEEECcCCc-CCc--Ccc-
Confidence 45666666552 221 111 2233 666677666654 211 01123467777776653 222 111
Q ss_pred HHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHH
Q 041246 374 ARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIV 453 (637)
Q Consensus 374 ~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll 453 (637)
+..+++|++|++++| .++. +.. .+++|+.|++++| .+... . .+..+++|++|+++++. +.. +
T Consensus 191 ~~~l~~L~~L~l~~N-~l~~-----l~~-~~~~L~~L~l~~n-~l~~l--p-~~~~l~~L~~L~l~~N~-l~~--l---- 252 (454)
T 1jl5_A 191 LQNLPFLTAIYADNN-SLKK-----LPD-LPLSLESIVAGNN-ILEEL--P-ELQNLPFLTTIYADNNL-LKT--L---- 252 (454)
T ss_dssp CTTCTTCCEEECCSS-CCSS-----CCC-CCTTCCEEECCSS-CCSSC--C-CCTTCTTCCEEECCSSC-CSS--C----
T ss_pred ccCCCCCCEEECCCC-cCCc-----CCC-CcCcccEEECcCC-cCCcc--c-ccCCCCCCCEEECCCCc-CCc--c----
Confidence 245677777777775 3322 011 1236778888777 33321 1 25577788888887743 221 0
Q ss_pred HHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHh
Q 041246 454 RAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEV 533 (637)
Q Consensus 454 ~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~ 533 (637)
....++|++|++++|. ++. +...+++|+.|++++| .++.. ....++|+.|++++|.++.. . .
T Consensus 253 ~~~~~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~ls~N-~l~~l-----~~~~~~L~~L~l~~N~l~~i--~----~ 314 (454)
T 1jl5_A 253 PDLPPSLEALNVRDNY-LTD-----LPELPQSLTFLDVSEN-IFSGL-----SELPPNLYYLNASSNEIRSL--C----D 314 (454)
T ss_dssp CSCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSEE-----SCCCTTCCEEECCSSCCSEE--C----C
T ss_pred cccccccCEEECCCCc-ccc-----cCcccCcCCEEECcCC-ccCcc-----cCcCCcCCEEECcCCcCCcc--c----C
Confidence 0124678888888763 432 2223467888888874 45431 01235788888888877641 1 1
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCC
Q 041246 534 SGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 534 ~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
..++|++|+++++. ++. +-..+++|++|++++|. ++. +. ..+++|++|++++|.
T Consensus 315 ~~~~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~L~~N~-l~~--lp---~~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 315 LPPSLEELNVSNNK-LIE-----LPALPPRLERLIASFNH-LAE--VP---ELPQNLKQLHVEYNP 368 (454)
T ss_dssp CCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSC
T ss_pred CcCcCCEEECCCCc-ccc-----ccccCCcCCEEECCCCc-ccc--cc---chhhhccEEECCCCC
Confidence 12578888888754 221 11235788888888886 552 21 146788888888874
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.81 E-value=8e-10 Score=106.69 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=64.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
+++|++|++++| .+++. ..+ ..+++|+.|++++| .++......+ ..+++|+.|+|++|.+++.....+. ..+
T Consensus 65 l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~l~--~l~ 136 (197)
T 4ezg_A 65 AHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGK-DVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKIN--TLP 136 (197)
T ss_dssp CTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECT-TCBGGGSCCC-TTCTTCCEEECCSSBCBGGGHHHHT--TCS
T ss_pred CCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECC-ccCcccChhh-cCCCCCCEEEecCCccCcHhHHHHh--hCC
Confidence 455555555554 23321 112 23556666666653 4443222222 2456666666666666654443332 235
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 537 SLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 537 ~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
+|++|+|++|..+++.. ....+++|+.|++++|. +++.. ....+++|+.|+++++
T Consensus 137 ~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC
T ss_pred CCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCc
Confidence 66666666554333321 23456677777777765 54422 2345677777777665
No 87
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=9.2e-08 Score=91.53 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=64.1
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEEcCCCCCCHHHHHHHH---hcCCCCCEEEeccCCCCHHHHHHH
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGK---KCSRLCALDLSHLDNLTDATVQYLA---DGCRSICSLKLCRNNFSDEALAAF 530 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~---~c~~L~~L~L~~c~~itd~~l~~L~---~~~~~L~~L~Ls~~~ltd~~l~~l 530 (637)
.++|++|+|++|..+++.++..++. .+++|++|+|++| .+++.+...++ ...++|++|+|++|.+++.|+..+
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 5666666666553466655544442 2456666666663 56666554443 234566666666666666666555
Q ss_pred HHh--cCCCccEEEcC-CCCCCCHHHHHHH---HhCCCCcceEeeecCCCCCHHH
Q 041246 531 LEV--SGDSLTELSLN-HVRGVGLNTALSL---AKCSRNLLSLDLSWCRFIKDEA 579 (637)
Q Consensus 531 ~~~--~~~~L~~L~Ls-~c~~l~~~~l~~l---~~~~~~L~~L~Ls~c~~ltd~~ 579 (637)
... .+++|++|+|+ ....+++.++..+ ....++|++|+|++|. +++.+
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence 432 12345555552 1223444443332 2334566666666665 55544
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.77 E-value=2.9e-09 Score=116.67 Aligned_cols=238 Identities=15% Similarity=0.122 Sum_probs=153.8
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHH
Q 041246 293 GSPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSK 372 (637)
Q Consensus 293 ~~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~ 372 (637)
..+++|+++++. ++. +. .. .++|+.|+|+++.. +. + ....++|++|+++++. ++.
T Consensus 71 ~~l~~L~l~~~~-l~~--lp---~~--~~~L~~L~l~~n~l--~~--l-------p~~~~~L~~L~l~~n~-l~~----- 125 (454)
T 1jl5_A 71 RQAHELELNNLG-LSS--LP---EL--PPHLESLVASCNSL--TE--L-------PELPQSLKSLLVDNNN-LKA----- 125 (454)
T ss_dssp HTCSEEECTTSC-CSC--CC---SC--CTTCSEEECCSSCC--SS--C-------CCCCTTCCEEECCSSC-CSC-----
T ss_pred cCCCEEEecCCc-ccc--CC---CC--cCCCCEEEccCCcC--Cc--c-------ccccCCCcEEECCCCc-cCc-----
Confidence 468899999975 433 11 11 27899999988762 22 1 1245789999999874 332
Q ss_pred HHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHH
Q 041246 373 LARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEI 452 (637)
Q Consensus 373 L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~l 452 (637)
+....++|++|++++| .++. +..+. .++ +|+.|++++|. ++... ...++|++|+++++. +..- ..
T Consensus 126 l~~~~~~L~~L~L~~n-~l~~--lp~~~-~l~-~L~~L~l~~N~-l~~lp-----~~~~~L~~L~L~~n~-l~~l--~~- 190 (454)
T 1jl5_A 126 LSDLPPLLEYLGVSNN-QLEK--LPELQ-NSS-FLKIIDVDNNS-LKKLP-----DLPPSLEFIAAGNNQ-LEEL--PE- 190 (454)
T ss_dssp CCSCCTTCCEEECCSS-CCSS--CCCCT-TCT-TCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSC-CSSC--CC-
T ss_pred ccCCCCCCCEEECcCC-CCCC--CcccC-CCC-CCCEEECCCCc-CcccC-----CCcccccEEECcCCc-CCcC--cc-
Confidence 1111268999999997 4443 11222 243 89999999984 33211 134589999999863 2221 11
Q ss_pred HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHH
Q 041246 453 VRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLE 532 (637)
Q Consensus 453 l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~ 532 (637)
+ ..+++|++|++++|. ++. +....++|+.|++++| .++. +.. ...+++|+.|++++|+++. +.
T Consensus 191 ~-~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~l~~N~l~~--l~---- 253 (454)
T 1jl5_A 191 L-QNLPFLTAIYADNNS-LKK-----LPDLPLSLESIVAGNN-ILEE--LPE-LQNLPFLTTIYADNNLLKT--LP---- 253 (454)
T ss_dssp C-TTCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSCCSS--CC----
T ss_pred c-cCCCCCCEEECCCCc-CCc-----CCCCcCcccEEECcCC-cCCc--ccc-cCCCCCCCEEECCCCcCCc--cc----
Confidence 1 347899999999874 442 2223468999999996 5552 222 3468999999999998764 11
Q ss_pred hcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCC
Q 041246 533 VSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 533 ~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
...++|+.|+++++.-.. +-...++|+.|++++|. ++.. ....++|+.|++++|.
T Consensus 254 ~~~~~L~~L~l~~N~l~~------l~~~~~~L~~L~ls~N~-l~~l-----~~~~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 254 DLPPSLEALNVRDNYLTD------LPELPQSLTFLDVSENI-FSGL-----SELPPNLYYLNASSNE 308 (454)
T ss_dssp SCCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSSC-CSEE-----SCCCTTCCEEECCSSC
T ss_pred ccccccCEEECCCCcccc------cCcccCcCCEEECcCCc-cCcc-----cCcCCcCCEEECcCCc
Confidence 123799999999875321 11235789999999987 5531 1223688888888873
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.76 E-value=1e-10 Score=118.87 Aligned_cols=204 Identities=20% Similarity=0.147 Sum_probs=97.0
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCC
Q 041246 352 PALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLN 431 (637)
Q Consensus 352 ~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~ 431 (637)
++|++|+++++. ++...... +..+++|++|++++| .++......+. .++ +|+.|++++|. ++... ...+..++
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~-~L~~L~L~~n~-l~~~~-~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYS-FFSFPELQVLDLSRC-EIQTIEDGAYQ-SLS-HLSTLILTGNP-IQSLA-LGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTT-TTTCTTCSEEECTTC-CCCEECTTTTT-TCT-TCCEEECTTCC-CCEEC-TTTTTTCT
T ss_pred CCccEEECCCCc-ccccCHhH-hccccCCcEEECCCC-cCCccCHHHcc-CCc-CCCEEECCCCc-cCccC-hhhhcCCc
Confidence 468888888763 33221111 245678888888886 44432211121 233 67888887763 22211 12345677
Q ss_pred CCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHH---HHHHHHhc
Q 041246 432 CLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDA---TVQYLADG 508 (637)
Q Consensus 432 ~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~---~l~~L~~~ 508 (637)
+|++|+++++.. ....... + ..+++|++|+++++. ++...+......+++|+.|++++| .++.. .+..+ ..
T Consensus 101 ~L~~L~l~~n~l-~~~~~~~-~-~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~ 174 (276)
T 2z62_A 101 SLQKLVAVETNL-ASLENFP-I-GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVL-HQ 174 (276)
T ss_dssp TCCEEECTTSCC-CCSTTCC-C-TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHH-HT
T ss_pred cccEEECCCCCc-cccCchh-c-ccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhh-hh
Confidence 777777766421 1110000 1 235677777777653 332212222234666777777664 44421 22222 12
Q ss_pred CCCCC-EEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 509 CRSIC-SLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 509 ~~~L~-~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
++.|. .|++++|.++......+ ...+|++|+|+++. ++.. ...+...+++|+.|+|++|+
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~---~~~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAF---KEIRLKELALDTNQ-LKSV-PDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSS---CSCCEEEEECCSSC-CSCC-CTTTTTTCCSCCEEECCSSC
T ss_pred ccccceeeecCCCcccccCcccc---CCCcccEEECCCCc-eeec-CHhHhcccccccEEEccCCc
Confidence 33333 66666666553211111 12356666666543 2110 01122345556666665554
No 90
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=2.4e-07 Score=88.61 Aligned_cols=127 Identities=9% Similarity=0.123 Sum_probs=83.8
Q ss_pred HHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHH--cCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEEcCCCCC
Q 041246 423 MLPALRKLNCLEVLSVAGIETVDDYFVTEIVRA--HCLNMRQLVLANCGQLTDRALKFVGK---KCSRLCALDLSHLDNL 497 (637)
Q Consensus 423 l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~--~~~~L~~L~Ls~c~~ltd~~l~~l~~---~c~~L~~L~L~~c~~i 497 (637)
+...+...+.|++|+|+++..+.+.++..+... ..++|++|+|++| .+++.+...++. ..+.|++|+|++| .|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 344556777788888877535777665554332 3567888888876 477777655543 3467888888874 78
Q ss_pred CHHHHHHHHh---cCCCCCEEEe--ccCCCCHHHHHHHHHh--cCCCccEEEcCCCCCCCHH
Q 041246 498 TDATVQYLAD---GCRSICSLKL--CRNNFSDEALAAFLEV--SGDSLTELSLNHVRGVGLN 552 (637)
Q Consensus 498 td~~l~~L~~---~~~~L~~L~L--s~~~ltd~~l~~l~~~--~~~~L~~L~Ls~c~~l~~~ 552 (637)
++.+...++. ..++|++|+| ++|.+++.+...+... .+++|++|+|+++. +++.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~ 166 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPR 166 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChH
Confidence 8877666653 3457888888 7788888776554321 24678888887753 4443
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.71 E-value=4e-10 Score=114.59 Aligned_cols=78 Identities=15% Similarity=0.047 Sum_probs=36.5
Q ss_pred cCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcC
Q 041246 508 GCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNC 587 (637)
Q Consensus 508 ~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c 587 (637)
.+++|+.|+|++|+++......+ ...++|++|+|+++.- +.. .......+++|+.|+|++|+ ++ ..|
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l-~~~-~~~~~~~l~~L~~L~l~~N~-~~--------~~~ 221 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVF--DKLTQLKDLRLYQNQL-KSV-PDGVFDRLTSLQYIWLHDNP-WD--------CTC 221 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCC-SCC-CTTTTTTCTTCCEEECCSSC-BC--------CCT
T ss_pred cCccCCEEECCCCCcCccCHHHh--cCCccCCEEECCCCcC-Ccc-CHHHHhCCcCCCEEEccCCC-cc--------ccC
Confidence 34555555555555442111101 1124555555554321 110 00122356777777777775 22 246
Q ss_pred CCcCEEEeecC
Q 041246 588 SLLRLLKLFGC 598 (637)
Q Consensus 588 p~L~~L~L~~C 598 (637)
|.|+.|+++.+
T Consensus 222 ~~l~~l~~~~n 232 (272)
T 3rfs_A 222 PGIRYLSEWIN 232 (272)
T ss_dssp TTTHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 66666666654
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.70 E-value=2.5e-10 Score=115.85 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=68.3
Q ss_pred CccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCC
Q 041246 353 ALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNC 432 (637)
Q Consensus 353 ~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~ 432 (637)
+++.+++++.. ++... . ...++|++|+|++| .++......+. .++ +|++|+++++. ++... ...+..+++
T Consensus 17 ~~~~l~~~~~~-l~~ip--~--~~~~~l~~L~l~~n-~l~~~~~~~~~-~l~-~L~~L~l~~n~-l~~i~-~~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIP--S--NIPADTKKLDLQSN-KLSSLPSKAFH-RLT-KLRLLYLNDNK-LQTLP-AGIFKELKN 86 (270)
T ss_dssp TTTEEECTTSC-CSSCC--S--CCCTTCSEEECCSS-CCSCCCTTSSS-SCT-TCCEEECCSSC-CSCCC-TTTTSSCTT
T ss_pred CCCEEEccCCC-CCccC--C--CCCCCCCEEECcCC-CCCeeCHHHhc-CCC-CCCEEECCCCc-cCeeC-hhhhcCCCC
Confidence 46677776642 22100 0 11245777777775 33322111111 122 67777776652 22110 112345666
Q ss_pred CcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCC
Q 041246 433 LEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSI 512 (637)
Q Consensus 433 L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L 512 (637)
|++|+++++. +...... .+ ..+++|++|+++++. ++...... ...+++|+.|+++++ .++..... ....+++|
T Consensus 87 L~~L~l~~n~-l~~~~~~-~~-~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L 159 (270)
T 2o6q_A 87 LETLWVTDNK-LQALPIG-VF-DQLVNLAELRLDRNQ-LKSLPPRV-FDSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSL 159 (270)
T ss_dssp CCEEECCSSC-CCCCCTT-TT-TTCSSCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTC
T ss_pred CCEEECCCCc-CCcCCHh-Hc-ccccCCCEEECCCCc-cCeeCHHH-hCcCcCCCEEECCCC-cCCccCHh-HccCCccc
Confidence 6666666532 2111100 01 124566666666542 33211111 123556666666663 34321111 12345566
Q ss_pred CEEEeccCCCC
Q 041246 513 CSLKLCRNNFS 523 (637)
Q Consensus 513 ~~L~Ls~~~lt 523 (637)
+.|+|++|.++
T Consensus 160 ~~L~L~~n~l~ 170 (270)
T 2o6q_A 160 KELRLYNNQLK 170 (270)
T ss_dssp CEEECCSSCCS
T ss_pred ceeEecCCcCc
Confidence 66666666544
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.69 E-value=6.5e-09 Score=106.87 Aligned_cols=165 Identities=22% Similarity=0.220 Sum_probs=120.5
Q ss_pred cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSR 485 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~ 485 (637)
+|+.|++++| .+... ..+..+++|++|+++++. +.... . + ..+++|++|++++|. +++ +.. ...+++
T Consensus 47 ~L~~L~l~~~-~i~~~---~~~~~l~~L~~L~L~~n~-l~~~~--~-l-~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~ 113 (291)
T 1h6t_A 47 SIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGNK-LTDIK--P-L-ANLKNLGWLFLDENK-VKD--LSS-LKDLKK 113 (291)
T ss_dssp TCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSSC-CCCCG--G-G-TTCTTCCEEECCSSC-CCC--GGG-GTTCTT
T ss_pred cccEEEccCC-CcccC---hhHhcCCCCCEEEccCCc-cCCCc--c-c-ccCCCCCEEECCCCc-CCC--Chh-hccCCC
Confidence 7999999998 34332 236789999999999864 33221 1 2 348999999999874 655 233 345899
Q ss_pred CCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcc
Q 041246 486 LCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLL 565 (637)
Q Consensus 486 L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~ 565 (637)
|+.|++++| .++.. .. ...+++|+.|++++|.+++. ..+ ...++|+.|+|+++. ++.... ...+++|+
T Consensus 114 L~~L~L~~n-~i~~~--~~-l~~l~~L~~L~l~~n~l~~~--~~l--~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~ 181 (291)
T 1h6t_A 114 LKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNNKITDI--TVL--SRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQ 181 (291)
T ss_dssp CCEEECTTS-CCCCC--GG-GGGCTTCCEEECCSSCCCCC--GGG--GGCTTCSEEECCSSC-CCCCGG---GTTCTTCC
T ss_pred CCEEECCCC-cCCCC--hh-hcCCCCCCEEEccCCcCCcc--hhh--ccCCCCCEEEccCCc-cccchh---hcCCCccC
Confidence 999999996 66653 22 35689999999999998764 222 235899999999875 332211 56789999
Q ss_pred eEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCC
Q 041246 566 SLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 566 ~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
.|+|++|. +++. .. ...+++|+.|++++|+
T Consensus 182 ~L~L~~N~-i~~l--~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 182 NLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp EEECCSSC-CCBC--GG-GTTCTTCSEEEEEEEE
T ss_pred EEECCCCc-CCCC--hh-hccCCCCCEEECcCCc
Confidence 99999997 7653 23 4579999999999984
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.68 E-value=1.1e-10 Score=116.27 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=29.1
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCC---EEEEcCCCCCCHHHHHHHHhcCCCCC-EEEeccCCCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLC---ALDLSHLDNLTDATVQYLADGCRSIC-SLKLCRNNFS 523 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~---~L~L~~c~~itd~~l~~L~~~~~~L~-~L~Ls~~~lt 523 (637)
+++|++|++++|. ++. +.. ...+++|+ .|+++++..++...... +..+++|+ .|++++|.++
T Consensus 104 l~~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CTTCCEEEEEEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEECCSCCCC
T ss_pred CCCCCEEeCCCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCccc-ccchhcceeEEEcCCCCCc
Confidence 4566666666542 322 111 22345555 66666642443211111 13456666 6666666554
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.67 E-value=1.7e-08 Score=103.79 Aligned_cols=170 Identities=17% Similarity=0.197 Sum_probs=120.8
Q ss_pred CCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHc
Q 041246 377 ASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAH 456 (637)
Q Consensus 377 ~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~ 456 (637)
+++|++|++++|. ++.. ..+ ..++ +|+.|++++|. ++... . +..+++|++|+++++. +... .. + ..
T Consensus 45 l~~L~~L~l~~~~-i~~~--~~~-~~l~-~L~~L~L~~n~-l~~~~--~-l~~l~~L~~L~l~~n~-l~~~--~~-l-~~ 110 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV--QGI-QYLP-NVTKLFLNGNK-LTDIK--P-LANLKNLGWLFLDENK-VKDL--SS-L-KD 110 (291)
T ss_dssp HHTCCEEECTTSC-CCCC--TTG-GGCT-TCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSC-CCCG--GG-G-TT
T ss_pred cCcccEEEccCCC-cccC--hhH-hcCC-CCCEEEccCCc-cCCCc--c-cccCCCCCEEECCCCc-CCCC--hh-h-cc
Confidence 5789999999974 4332 112 2344 89999999984 44322 2 7899999999999964 3331 12 2 34
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
+++|++|++++| .+++. ..+ ..+++|+.|++++| .++.. .....+++|+.|+|++|.+++... + ...+
T Consensus 111 l~~L~~L~L~~n-~i~~~--~~l-~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~--l--~~l~ 178 (291)
T 1h6t_A 111 LKKLKSLSLEHN-GISDI--NGL-VHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQISDIVP--L--AGLT 178 (291)
T ss_dssp CTTCCEEECTTS-CCCCC--GGG-GGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCCCGG--G--TTCT
T ss_pred CCCCCEEECCCC-cCCCC--hhh-cCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCccccchh--h--cCCC
Confidence 799999999988 46542 333 35899999999995 66653 234578999999999999876432 2 3458
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCH
Q 041246 537 SLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKD 577 (637)
Q Consensus 537 ~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd 577 (637)
+|+.|+|+++. +++. .. ...+++|+.|++++|+ +++
T Consensus 179 ~L~~L~L~~N~-i~~l--~~-l~~l~~L~~L~l~~n~-i~~ 214 (291)
T 1h6t_A 179 KLQNLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQE-CLN 214 (291)
T ss_dssp TCCEEECCSSC-CCBC--GG-GTTCTTCSEEEEEEEE-EEC
T ss_pred ccCEEECCCCc-CCCC--hh-hccCCCCCEEECcCCc-ccC
Confidence 99999999874 4332 12 4578999999999987 443
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.66 E-value=1.2e-08 Score=98.42 Aligned_cols=15 Identities=13% Similarity=-0.272 Sum_probs=10.3
Q ss_pred hCCCCcceEeeecCC
Q 041246 559 KCSRNLLSLDLSWCR 573 (637)
Q Consensus 559 ~~~~~L~~L~Ls~c~ 573 (637)
..+++|+.|++++|.
T Consensus 178 ~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEEECBC-
T ss_pred ccCCCCCEEEeeCcc
Confidence 356778888887776
No 97
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.65 E-value=3.1e-10 Score=115.35 Aligned_cols=203 Identities=18% Similarity=0.150 Sum_probs=100.0
Q ss_pred CCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcC
Q 041246 378 SALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHC 457 (637)
Q Consensus 378 ~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~ 457 (637)
++|++|++++| .++......+.. ++ +|+.|++++| .+.... ...+.++++|++|+++++. +....... + ..+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~-l~-~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~-~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFS-FP-ELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGA-F-SGL 99 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTT-CT-TCSEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTT-T-TTC
T ss_pred CCccEEECCCC-cccccCHhHhcc-cc-CCcEEECCCC-cCCccC-HHHccCCcCCCEEECCCCc-cCccChhh-h-cCC
Confidence 45777777775 444322212222 33 6777777776 232211 1234567777777777642 22111001 1 225
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHH---HHHHHHHhc
Q 041246 458 LNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDE---ALAAFLEVS 534 (637)
Q Consensus 458 ~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~---~l~~l~~~~ 534 (637)
++|++|++++|. ++...... ...+++|+.|+++++ .++...+......+++|+.|+|++|+++.. .+..+..
T Consensus 100 ~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-- 174 (276)
T 2z62_A 100 SSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-- 174 (276)
T ss_dssp TTCCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT--
T ss_pred ccccEEECCCCC-ccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh--
Confidence 677777777653 33211111 223677777777774 444322222334567777777777766542 2333211
Q ss_pred CCCcc-EEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 535 GDSLT-ELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 535 ~~~L~-~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
...|. +|+++++. ++... ...-...+|+.|+|++|. ++.... .++..+++|+.|+|+++
T Consensus 175 L~~l~l~L~ls~n~-l~~~~--~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 175 MPLLNLSLDLSLNP-MNFIQ--PGAFKEIRLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CTTCCEEEECCSSC-CCEEC--TTSSCSCCEEEEECCSSC-CSCCCT-TTTTTCCSCCEEECCSS
T ss_pred ccccceeeecCCCc-ccccC--ccccCCCcccEEECCCCc-eeecCH-hHhcccccccEEEccCC
Confidence 12222 66776643 21100 001123367777777776 543221 22345677777777754
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.63 E-value=1e-08 Score=116.21 Aligned_cols=166 Identities=21% Similarity=0.194 Sum_probs=120.9
Q ss_pred cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSR 485 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~ 485 (637)
+|+.|++++|. +... ..+..+++|+.|+|+++. +.... . + ..+++|+.|+|++|. ++.. ..+ ..+++
T Consensus 44 ~L~~L~l~~n~-i~~l---~~l~~l~~L~~L~Ls~N~-l~~~~--~-l-~~l~~L~~L~Ls~N~-l~~l--~~l-~~l~~ 110 (605)
T 1m9s_A 44 SIDQIIANNSD-IKSV---QGIQYLPNVTKLFLNGNK-LTDIK--P-L-TNLKNLGWLFLDENK-IKDL--SSL-KDLKK 110 (605)
T ss_dssp TCCCCBCTTCC-CCCC---TTGGGCTTCCEEECTTSC-CCCCG--G-G-GGCTTCCEEECCSSC-CCCC--TTS-TTCTT
T ss_pred CCCEEECcCCC-CCCC---hHHccCCCCCEEEeeCCC-CCCCh--h-h-ccCCCCCEEECcCCC-CCCC--hhh-ccCCC
Confidence 79999999884 4332 246789999999999864 32211 1 2 348999999999984 5542 233 45899
Q ss_pred CCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcc
Q 041246 486 LCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLL 565 (637)
Q Consensus 486 L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~ 565 (637)
|+.|+|++| .++.. .. ...+++|+.|+|++|.+++. ..+ ..+++|+.|+|++|.- +.... ...+++|+
T Consensus 111 L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N~l~~l--~~l--~~l~~L~~L~Ls~N~l-~~~~~---l~~l~~L~ 178 (605)
T 1m9s_A 111 LKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNNKITDI--TVL--SRLTKLDTLSLEDNQI-SDIVP---LAGLTKLQ 178 (605)
T ss_dssp CCEEECTTS-CCCCC--GG-GGGCTTCSEEECCSSCCCCC--GGG--GSCTTCSEEECCSSCC-CCCGG---GTTCTTCC
T ss_pred CCEEEecCC-CCCCC--cc-ccCCCccCEEECCCCccCCc--hhh--cccCCCCEEECcCCcC-CCchh---hccCCCCC
Confidence 999999996 56642 22 35789999999999998764 222 2458999999998753 32111 56789999
Q ss_pred eEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCC
Q 041246 566 SLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQ 600 (637)
Q Consensus 566 ~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ 600 (637)
.|+|++|. +++. .. +..|++|+.|+|.+|..
T Consensus 179 ~L~Ls~N~-i~~l--~~-l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 179 NLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EEECCSSC-CCBC--GG-GTTCTTCSEEECCSEEE
T ss_pred EEECcCCC-CCCC--hH-HccCCCCCEEEccCCcC
Confidence 99999997 6653 22 45799999999999853
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.62 E-value=1.3e-08 Score=115.33 Aligned_cols=170 Identities=17% Similarity=0.206 Sum_probs=120.7
Q ss_pred hCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHH
Q 041246 376 SASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRA 455 (637)
Q Consensus 376 ~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~ 455 (637)
.+++|+.|++++|. ++... .+ ..++ +|+.|+|++|. +.... . +..+++|+.|+|+++. +.... . + .
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~--~l-~~l~-~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~--~-l-~ 106 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ--GI-QYLP-NVTKLFLNGNK-LTDIK--P-LTNLKNLGWLFLDENK-IKDLS--S-L-K 106 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT--TG-GGCT-TCCEEECTTSC-CCCCG--G-GGGCTTCCEEECCSSC-CCCCT--T-S-T
T ss_pred cCCCCCEEECcCCC-CCCCh--HH-ccCC-CCCEEEeeCCC-CCCCh--h-hccCCCCCEEECcCCC-CCCCh--h-h-c
Confidence 35889999999974 43321 22 2354 89999999984 43322 1 7899999999999964 33211 1 2 3
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcC
Q 041246 456 HCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSG 535 (637)
Q Consensus 456 ~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~ 535 (637)
.+++|++|+|++|. +++ +..+ ..|++|+.|+|++| .++.. .....+++|+.|+|++|.+++... + ..+
T Consensus 107 ~l~~L~~L~Ls~N~-l~~--l~~l-~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l--~~l 174 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISD--INGL-VHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQISDIVP--L--AGL 174 (605)
T ss_dssp TCTTCCEEECTTSC-CCC--CGGG-GGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSCCCCCGG--G--TTC
T ss_pred cCCCCCEEEecCCC-CCC--Cccc-cCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCcCCCchh--h--ccC
Confidence 47999999999884 554 2333 45899999999996 66653 234578999999999999876422 2 345
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCC
Q 041246 536 DSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIK 576 (637)
Q Consensus 536 ~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~lt 576 (637)
++|+.|+|++|. +++. .....+++|+.|+|++|. ++
T Consensus 175 ~~L~~L~Ls~N~-i~~l---~~l~~l~~L~~L~L~~N~-l~ 210 (605)
T 1m9s_A 175 TKLQNLYLSKNH-ISDL---RALAGLKNLDVLELFSQE-CL 210 (605)
T ss_dssp TTCCEEECCSSC-CCBC---GGGTTCTTCSEEECCSEE-EE
T ss_pred CCCCEEECcCCC-CCCC---hHHccCCCCCEEEccCCc-Cc
Confidence 899999999874 3331 124578999999999987 44
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.62 E-value=6.1e-10 Score=114.58 Aligned_cols=200 Identities=16% Similarity=0.061 Sum_probs=115.2
Q ss_pred cCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHh
Q 041246 349 FSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALR 428 (637)
Q Consensus 349 ~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~ 428 (637)
.++++|++|+++++. ++... ....++|+.|++++| .++......+.. ++ +|+.|+++++. ++.... ..
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip----~~~~~~l~~L~L~~N-~l~~~~~~~~~~-l~-~L~~L~L~~n~-l~~~~~---~~ 74 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALP----PDLPKDTTILHLSEN-LLYTFSLATLMP-YT-RLTQLNLDRAE-LTKLQV---DG 74 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCC----SCCCTTCCEEECTTS-CCSEEEGGGGTT-CT-TCCEEECTTSC-CCEEEC---CS
T ss_pred cccCCccEEECCCCC-CCcCC----CCCCCCCCEEEcCCC-cCCccCHHHhhc-CC-CCCEEECCCCc-cCcccC---CC
Confidence 477889999998753 32110 011367899999986 454432222322 33 78999998873 332211 15
Q ss_pred cCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhc
Q 041246 429 KLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADG 508 (637)
Q Consensus 429 ~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~ 508 (637)
.+++|+.|+++++. +..- ...+ ..+++|++|+++++ .++...... ...+++|+.|+++++ .++.... ..+..
T Consensus 75 ~l~~L~~L~Ls~N~-l~~l--~~~~-~~l~~L~~L~l~~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~~-~~~~~ 146 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQ-LQSL--PLLG-QTLPALTVLDVSFN-RLTSLPLGA-LRGLGELQELYLKGN-ELKTLPP-GLLTP 146 (290)
T ss_dssp CCTTCCEEECCSSC-CSSC--CCCT-TTCTTCCEEECCSS-CCCCCCSST-TTTCTTCCEEECTTS-CCCCCCT-TTTTT
T ss_pred CCCcCCEEECCCCc-CCcC--chhh-ccCCCCCEEECCCC-cCcccCHHH-HcCCCCCCEEECCCC-CCCccCh-hhccc
Confidence 78888999888753 2211 0111 23678888888876 354321111 234778888888884 5553211 12245
Q ss_pred CCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 509 CRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 509 ~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
+++|+.|+|++|+++......+ ...++|+.|+|+++.- +. +..-+...++|+.|+|++|+
T Consensus 147 l~~L~~L~L~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l-~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPAGLL--NGLENLDTLLLQENSL-YT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTCCEEECTTSCCSCCCTTTT--TTCTTCCEEECCSSCC-CC--CCTTTTTTCCCSEEECCSCC
T ss_pred ccCCCEEECCCCcCCccCHHHh--cCcCCCCEEECCCCcC-Cc--cChhhcccccCCeEEeCCCC
Confidence 7788888888887763211111 1236788888887542 21 11112235678888888776
No 101
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.61 E-value=2.4e-09 Score=108.76 Aligned_cols=159 Identities=20% Similarity=0.153 Sum_probs=96.1
Q ss_pred HhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHH
Q 041246 427 LRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLA 506 (637)
Q Consensus 427 l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~ 506 (637)
+..+++|++|+++++. +... .. + ..+++|++|++++| .++.... .....+++|+.|++++| .++.... ...
T Consensus 59 l~~l~~L~~L~l~~n~-l~~~--~~-l-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~ 129 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNK-LHDI--SA-L-KELTNLTYLILTGN-QLQSLPN-GVFDKLTNLKELVLVEN-QLQSLPD-GVF 129 (272)
T ss_dssp GGGCTTCCEEECTTSC-CCCC--GG-G-TTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCT-TTT
T ss_pred cccCCCCcEEECCCCC-CCCc--hh-h-cCCCCCCEEECCCC-ccCccCh-hHhcCCcCCCEEECCCC-cCCccCH-HHh
Confidence 3456666666666543 2221 11 1 23667777777766 3442211 11234778888888885 5553211 123
Q ss_pred hcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhc
Q 041246 507 DGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDN 586 (637)
Q Consensus 507 ~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~ 586 (637)
..+++|+.|+|++|.++......+ ...++|+.|+|+++. ++.. .......+++|+.|+|++|. ++.... .....
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~ 203 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDLSYNQ-LQSL-PEGVFDKLTQLKDLRLYQNQ-LKSVPD-GVFDR 203 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTT
T ss_pred ccCCCCCEEECCCCccCccCHHHh--ccCccCCEEECCCCC-cCcc-CHHHhcCCccCCEEECCCCc-CCccCH-HHHhC
Confidence 467899999999988764321111 234799999999874 3321 11223568999999999997 654322 23357
Q ss_pred CCCcCEEEeecCCC
Q 041246 587 CSLLRLLKLFGCSQ 600 (637)
Q Consensus 587 cp~L~~L~L~~C~~ 600 (637)
+++|+.|++.+|+.
T Consensus 204 l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 204 LTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CcCCCEEEccCCCc
Confidence 89999999998753
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.50 E-value=6e-10 Score=110.76 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=26.9
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecC
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQ 387 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~ 387 (637)
++|+.|+|+++. ++.-. ...+..+++|++|+++++..++..... .+..+++|++|++++
T Consensus 31 ~~l~~L~l~~n~--l~~i~-----~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 31 PSTQTLKLIETH--LRTIP-----SHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRN 89 (239)
T ss_dssp TTCCEEEEESCC--CSEEC-----TTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEE
T ss_pred CcccEEEEeCCc--ceEEC-----HHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCC
Confidence 456666666554 11100 012335666666666665322211100 113455666666665
No 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.48 E-value=5.1e-09 Score=106.12 Aligned_cols=84 Identities=24% Similarity=0.157 Sum_probs=36.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
+++|++|+|++| .++..... ....+++|+.|+++++ .++...... +..+++|+.|+|++|.++......+ ...+
T Consensus 132 l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~ 205 (270)
T 2o6q_A 132 LTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNN-QLKRVPEGA-FDKLTELKTLKLDNNQLKRVPEGAF--DSLE 205 (270)
T ss_dssp CTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTT--TTCT
T ss_pred CcCCCEEECCCC-cCCccCHh-HccCCcccceeEecCC-cCcEeChhH-hccCCCcCEEECCCCcCCcCCHHHh--cccc
Confidence 455555555554 23221111 1123455666666553 333211111 1345566666666665543211111 1235
Q ss_pred CccEEEcCCC
Q 041246 537 SLTELSLNHV 546 (637)
Q Consensus 537 ~L~~L~Ls~c 546 (637)
+|+.|+|+++
T Consensus 206 ~L~~L~l~~N 215 (270)
T 2o6q_A 206 KLKMLQLQEN 215 (270)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEecCC
Confidence 6666666654
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.48 E-value=1.7e-08 Score=92.48 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=16.4
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC
Q 041246 483 CSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
+++|+.|++++| .++.. .....+++|+.|+|++|.++
T Consensus 41 l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~ 77 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVS 77 (149)
T ss_dssp CTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCC
T ss_pred cCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCccc
Confidence 445555555543 33322 11223445555555555444
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.47 E-value=8.2e-09 Score=96.65 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=26.1
Q ss_pred hCCCCcceEeeecCCCCCHHHH--HHHHhcCCCcCEEEeecCC
Q 041246 559 KCSRNLLSLDLSWCRFIKDEAL--GFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 559 ~~~~~L~~L~Ls~c~~ltd~~l--~~l~~~cp~L~~L~L~~C~ 599 (637)
..+++|+.|++++|. ++.... ...+..+++|+.|++.+|.
T Consensus 117 ~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 117 KKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 356778888887776 443321 2344578888888888774
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.38 E-value=1.4e-07 Score=86.23 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=48.8
Q ss_pred cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSR 485 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~ 485 (637)
+|+.|++++|. +++..+...+..+++|+.|+++++. +... .. + ..+++|++|++++|. ++.. +......+++
T Consensus 18 ~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~-~-~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~ 89 (149)
T 2je0_A 18 DVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVG-LTSI--AN-L-PKLNKLKKLELSDNR-VSGG-LEVLAEKCPN 89 (149)
T ss_dssp GCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSC-CCCC--TT-C-CCCTTCCEEECCSSC-CCSC-THHHHHHCTT
T ss_pred cCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCC-CCCc--hh-h-hcCCCCCEEECCCCc-ccch-HHHHhhhCCC
Confidence 56666666652 3211122233455666666665542 2211 11 1 124556666665542 3321 2222233555
Q ss_pred CCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC
Q 041246 486 LCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 486 L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
|+.|++++| .++..........+++|+.|++++|.++
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 666666553 4444322222344555556655555543
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.32 E-value=9.6e-08 Score=107.37 Aligned_cols=189 Identities=15% Similarity=0.087 Sum_probs=98.9
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCC
Q 041246 352 PALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLN 431 (637)
Q Consensus 352 ~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~ 431 (637)
.+|+.|+|+++. ++. +.. ..+++|++|+|++| .++.-. ..+ ++|+.|++++| .++... . +..
T Consensus 59 ~~L~~L~Ls~n~-L~~--lp~--~l~~~L~~L~Ls~N-~l~~ip-----~~l-~~L~~L~Ls~N-~l~~ip--~-l~~-- 120 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSS--LPD--NLPPQITVLEITQN-ALISLP-----ELP-ASLEYLDACDN-RLSTLP--E-LPA-- 120 (571)
T ss_dssp TTCSEEECCSSC-CSC--CCS--CCCTTCSEEECCSS-CCSCCC-----CCC-TTCCEEECCSS-CCSCCC--C-CCT--
T ss_pred CCccEEEeCCCC-CCc--cCH--hHcCCCCEEECcCC-CCcccc-----ccc-CCCCEEEccCC-CCCCcc--h-hhc--
Confidence 478888887763 332 111 01367888888876 444211 112 37888888877 333211 1 212
Q ss_pred CCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCC
Q 041246 432 CLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRS 511 (637)
Q Consensus 432 ~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~ 511 (637)
+|++|+++++. ++. +.. .+++|+.|+|++| .++. +...+++|+.|+|++| .++..+ .+ .++
T Consensus 121 ~L~~L~Ls~N~-l~~--lp~----~l~~L~~L~Ls~N-~l~~-----lp~~l~~L~~L~Ls~N-~L~~lp--~l---~~~ 181 (571)
T 3cvr_A 121 SLKHLDVDNNQ-LTM--LPE----LPALLEYINADNN-QLTM-----LPELPTSLEVLSVRNN-QLTFLP--EL---PES 181 (571)
T ss_dssp TCCEEECCSSC-CSC--CCC----CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSCCC--CC---CTT
T ss_pred CCCEEECCCCc-CCC--CCC----cCccccEEeCCCC-ccCc-----CCCcCCCcCEEECCCC-CCCCcc--hh---hCC
Confidence 77888877742 222 111 3577888888776 3442 1124567788888774 444311 12 167
Q ss_pred CCEEEeccCCCCHHHHHHHH---HhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHH
Q 041246 512 ICSLKLCRNNFSDEALAAFL---EVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFI 583 (637)
Q Consensus 512 L~~L~Ls~~~ltd~~l~~l~---~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l 583 (637)
|+.|+|++|.++. +..+. ....+.|+.|+|+++. ++. +..-+..+++|+.|+|++|. ++......+
T Consensus 182 L~~L~Ls~N~L~~--lp~~~~~L~~~~~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~L~~N~-l~~~~p~~l 250 (571)
T 3cvr_A 182 LEALDVSTNLLES--LPAVPVRNHHSEETEIFFRCRENR-ITH--IPENILSLDPTCTIILEDNP-LSSRIRESL 250 (571)
T ss_dssp CCEEECCSSCCSS--CCCCC--------CCEEEECCSSC-CCC--CCGGGGGSCTTEEEECCSSS-CCHHHHHHH
T ss_pred CCEEECcCCCCCc--hhhHHHhhhcccccceEEecCCCc-cee--cCHHHhcCCCCCEEEeeCCc-CCCcCHHHH
Confidence 7888887777652 11110 0011222777777643 221 11112236777777777776 665554443
No 108
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.31 E-value=3.4e-08 Score=101.44 Aligned_cols=204 Identities=22% Similarity=0.170 Sum_probs=132.0
Q ss_pred hCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHH
Q 041246 376 SASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRA 455 (637)
Q Consensus 376 ~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~ 455 (637)
.+++|++++++++ .++. +....+++++.|+++++. ++... ...+..+++|++|+++++. ++.... . .
T Consensus 8 ~l~~l~~l~~~~~-~l~~-----ip~~~~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~--~--~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTA-----LPPDLPKDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDRAE-LTKLQV--D--G 74 (290)
T ss_dssp CSTTCCEEECTTS-CCSS-----CCSCCCTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTTSC-CCEEEC--C--S
T ss_pred ccCCccEEECCCC-CCCc-----CCCCCCCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCCCc-cCcccC--C--C
Confidence 4678999999985 4442 222234589999999984 33221 3356789999999999853 332111 0 3
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcC
Q 041246 456 HCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSG 535 (637)
Q Consensus 456 ~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~ 535 (637)
.+++|++|+|+++ .++. +......+++|+.|+++++ .++..... .+..+++|+.|+|++|+++......+ ...
T Consensus 75 ~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l 147 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFN-RLTSLPLG-ALRGLGELQELYLKGNELKTLPPGLL--TPT 147 (290)
T ss_dssp CCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSS-CCCCCCSS-TTTTCTTCCEEECTTSCCCCCCTTTT--TTC
T ss_pred CCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCC-cCcccCHH-HHcCCCCCCEEECCCCCCCccChhhc--ccc
Confidence 4789999999987 4542 2222345789999999994 66532211 23568899999999998764221111 134
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChh
Q 041246 536 DSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNV 604 (637)
Q Consensus 536 ~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~ 604 (637)
++|+.|+|+++. ++.. ...+...+++|+.|+|++|. ++. +..-+..+++|+.|+|.+++..-+.
T Consensus 148 ~~L~~L~L~~N~-l~~l-~~~~~~~l~~L~~L~L~~N~-l~~--ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 148 PKLEKLSLANNN-LTEL-PAGLLNGLENLDTLLLQENS-LYT--IPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTCCEEECTTSC-CSCC-CTTTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cCCCEEECCCCc-CCcc-CHHHhcCcCCCCEEECCCCc-CCc--cChhhcccccCCeEEeCCCCccCcC
Confidence 789999999864 2210 11123467899999999987 552 2112234678999999988755443
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.29 E-value=3.2e-07 Score=92.72 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=112.1
Q ss_pred ceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCC
Q 041246 407 LRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRL 486 (637)
Q Consensus 407 L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L 486 (637)
+..++++++ .++... .+..+++|++|+++++. +.... . + ..+++|++|++++| .+++... ...+++|
T Consensus 21 l~~l~l~~~-~i~~~~---~~~~l~~L~~L~l~~n~-i~~l~--~-l-~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L 87 (263)
T 1xeu_A 21 AVKQNLGKQ-SVTDLV---SQKELSGVQNFNGDNSN-IQSLA--G-M-QFFTNLKELHLSHN-QISDLSP---LKDLTKL 87 (263)
T ss_dssp HHHHHHTCS-CTTSEE---CHHHHTTCSEEECTTSC-CCCCT--T-G-GGCTTCCEEECCSS-CCCCCGG---GTTCSSC
T ss_pred HHHHHhcCC-Cccccc---chhhcCcCcEEECcCCC-cccch--H-H-hhCCCCCEEECCCC-ccCCChh---hccCCCC
Confidence 444555554 333221 34578999999999863 33211 1 2 34799999999987 4654322 4568999
Q ss_pred CEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcce
Q 041246 487 CALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLS 566 (637)
Q Consensus 487 ~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~ 566 (637)
+.|+++++ .++.. ..+. . ++|+.|+|++|.+++. ..+ ...++|+.|+|+++. ++.. . ....+++|+.
T Consensus 88 ~~L~L~~N-~l~~l--~~~~-~-~~L~~L~L~~N~l~~~--~~l--~~l~~L~~L~Ls~N~-i~~~--~-~l~~l~~L~~ 154 (263)
T 1xeu_A 88 EELSVNRN-RLKNL--NGIP-S-ACLSRLFLDNNELRDT--DSL--IHLKNLEILSIRNNK-LKSI--V-MLGFLSKLEV 154 (263)
T ss_dssp CEEECCSS-CCSCC--TTCC-C-SSCCEEECCSSCCSBS--GGG--TTCTTCCEEECTTSC-CCBC--G-GGGGCTTCCE
T ss_pred CEEECCCC-ccCCc--Cccc-c-CcccEEEccCCccCCC--hhh--cCcccccEEECCCCc-CCCC--h-HHccCCCCCE
Confidence 99999995 66542 1222 2 8999999999998763 222 235899999999865 4332 1 3456899999
Q ss_pred EeeecCCCCCHHHHHHHHhcCCCcCEEEeecCC
Q 041246 567 LDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCS 599 (637)
Q Consensus 567 L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~ 599 (637)
|+|++|. +++. .....+++|+.|++++|.
T Consensus 155 L~L~~N~-i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 155 LDLHGNE-ITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECTTSC-CCBC---TTSTTCCCCCEEEEEEEE
T ss_pred EECCCCc-Ccch---HHhccCCCCCEEeCCCCc
Confidence 9999997 6654 334578999999999985
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.26 E-value=1.9e-08 Score=100.78 Aligned_cols=109 Identities=22% Similarity=0.101 Sum_probs=49.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
+++|++|+|+++ .++.... .....+++|+.|+|+++ .++.... ..+..+++|+.|+|++|.++......+ ...+
T Consensus 82 l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~ 155 (251)
T 3m19_A 82 LTELGTLGLANN-QLASLPL-GVFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAGAF--DKLT 155 (251)
T ss_dssp CTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT--TTCT
T ss_pred CCcCCEEECCCC-cccccCh-hHhcccCCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCCcCCccCHHHc--CcCc
Confidence 455555555554 2332111 11123556666666653 4442111 112345666666666665543211111 1124
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 537 SLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 537 ~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
+|++|+|+++.- +.. .......+++|+.|+|++|+
T Consensus 156 ~L~~L~L~~N~l-~~~-~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 156 NLQTLSLSTNQL-QSV-PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSSCC-SCC-CTTTTTTCTTCCEEECCSCC
T ss_pred CCCEEECCCCcC-Ccc-CHHHHhCCCCCCEEEeeCCc
Confidence 566666665421 110 00122346777777777776
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.24 E-value=1.8e-07 Score=94.50 Aligned_cols=142 Identities=14% Similarity=0.121 Sum_probs=103.0
Q ss_pred cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSR 485 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~ 485 (637)
+|+.|++++| .++.. ..+..+++|+.|+++++. +.+... + ..+++|++|++++|. ++.. ..+.. ++
T Consensus 42 ~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~L~~N~-i~~~~~---l-~~l~~L~~L~L~~N~-l~~l--~~~~~--~~ 107 (263)
T 1xeu_A 42 GVQNFNGDNS-NIQSL---AGMQFFTNLKELHLSHNQ-ISDLSP---L-KDLTKLEELSVNRNR-LKNL--NGIPS--AC 107 (263)
T ss_dssp TCSEEECTTS-CCCCC---TTGGGCTTCCEEECCSSC-CCCCGG---G-TTCSSCCEEECCSSC-CSCC--TTCCC--SS
T ss_pred cCcEEECcCC-Ccccc---hHHhhCCCCCEEECCCCc-cCCChh---h-ccCCCCCEEECCCCc-cCCc--Ccccc--Cc
Confidence 8999999998 45432 256789999999999863 333221 2 348999999999874 5542 22222 78
Q ss_pred CCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcc
Q 041246 486 LCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLL 565 (637)
Q Consensus 486 L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~ 565 (637)
|+.|++++| .++.. .. ...+++|+.|+|++|++++.. .+ ...++|+.|+|+++. +++. .....+++|+
T Consensus 108 L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N~i~~~~--~l--~~l~~L~~L~L~~N~-i~~~---~~l~~l~~L~ 175 (263)
T 1xeu_A 108 LSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNNKLKSIV--ML--GFLSKLEVLDLHGNE-ITNT---GGLTRLKKVN 175 (263)
T ss_dssp CCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTSCCCBCG--GG--GGCTTCCEEECTTSC-CCBC---TTSTTCCCCC
T ss_pred ccEEEccCC-ccCCC--hh-hcCcccccEEECCCCcCCCCh--HH--ccCCCCCEEECCCCc-Ccch---HHhccCCCCC
Confidence 999999995 67653 22 457899999999999988642 22 235899999999865 3322 2345789999
Q ss_pred eEeeecCC
Q 041246 566 SLDLSWCR 573 (637)
Q Consensus 566 ~L~Ls~c~ 573 (637)
.|++++|.
T Consensus 176 ~L~l~~N~ 183 (263)
T 1xeu_A 176 WIDLTGQK 183 (263)
T ss_dssp EEEEEEEE
T ss_pred EEeCCCCc
Confidence 99999987
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.24 E-value=3.1e-07 Score=85.76 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=36.6
Q ss_pred CCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhc
Q 041246 350 SLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRK 429 (637)
Q Consensus 350 ~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~ 429 (637)
.+++|+.|+|++|. ++.. ..+..+++|++|++++| .++.. +..+...++ +|+.|++++| .++.......+..
T Consensus 47 ~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~l~~ 118 (168)
T 2ell_A 47 EFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLP-NLTHLNLSGN-KLKDISTLEPLKK 118 (168)
T ss_dssp GGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCT-TCCEEECBSS-SCCSSGGGGGGSS
T ss_pred hCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhCC-CCCEEeccCC-ccCcchhHHHHhc
Confidence 45566666666553 2221 11233455666666654 23221 111222233 5555555555 2322111123344
Q ss_pred CCCCcEEeccCC
Q 041246 430 LNCLEVLSVAGI 441 (637)
Q Consensus 430 l~~L~~L~Ls~~ 441 (637)
+++|++|+++++
T Consensus 119 l~~L~~L~l~~N 130 (168)
T 2ell_A 119 LECLKSLDLFNC 130 (168)
T ss_dssp CSCCCEEECCSS
T ss_pred CCCCCEEEeeCC
Confidence 555555555553
No 113
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.21 E-value=1.1e-05 Score=77.66 Aligned_cols=124 Identities=15% Similarity=0.284 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhc---CCCCCEEEEcCCCCCCHHHHHHHH---hcCCCCCEEEeccCC
Q 041246 448 FVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKK---CSRLCALDLSHLDNLTDATVQYLA---DGCRSICSLKLCRNN 521 (637)
Q Consensus 448 ~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~---c~~L~~L~L~~c~~itd~~l~~L~---~~~~~L~~L~Ls~~~ 521 (637)
.+..++ ...++|++|+|+++..+.+.+...++.. -..|+.|+|++| .+++.+...++ ..-+.|+.|+|+.|.
T Consensus 32 ~l~~ll-~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 32 CINRLR-EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHH-TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHH-hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 344433 3357788888876556777777666643 246888888884 78877765554 334678888888888
Q ss_pred CCHHHHHHHHHhc--CCCccEEEcCCCC--CCCHHHHHHH---HhCCCCcceEeeecCC
Q 041246 522 FSDEALAAFLEVS--GDSLTELSLNHVR--GVGLNTALSL---AKCSRNLLSLDLSWCR 573 (637)
Q Consensus 522 ltd~~l~~l~~~~--~~~L~~L~Ls~c~--~l~~~~l~~l---~~~~~~L~~L~Ls~c~ 573 (637)
|++.|..++.... ...|++|+|+++. .+++.+...+ ...-++|.+|+++++.
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 8888877765432 3567777777542 4666554433 3345677777776554
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.18 E-value=4.7e-09 Score=110.67 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=51.9
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCc
Q 041246 485 RLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNL 564 (637)
Q Consensus 485 ~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L 564 (637)
++..|++.+++.++......+......|+.|+|++|+++.-.-..+ .+.+|++|.+.++..++.... .+...+++|
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L 204 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLSDNNNLEELPN-DVFHGASGP 204 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS---TTEEEEEEECTTCTTCCCCCT-TTTTTEECC
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc---cccchhHHhhccCCcccCCCH-HHhccCccc
Confidence 4455555554444322111121222346666776666553111111 124667777765544432110 122356677
Q ss_pred ceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCC
Q 041246 565 LSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQIT 602 (637)
Q Consensus 565 ~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~lt 602 (637)
++|+|++|. |+.-. ...+.+|++|.+.+|..++
T Consensus 205 ~~LdLs~N~-l~~lp----~~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 205 VILDISRTR-IHSLP----SYGLENLKKLRARSTYNLK 237 (350)
T ss_dssp SEEECTTSC-CCCCC----SSSCTTCCEEECTTCTTCC
T ss_pred chhhcCCCC-cCccC----hhhhccchHhhhccCCCcC
Confidence 777777775 44211 1235567777776665543
No 115
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.16 E-value=2.2e-05 Score=75.61 Aligned_cols=125 Identities=10% Similarity=0.174 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhc---CCCCCEEEeccCCCCHHHHHHHHH--hcCCCccEEEcCCCC
Q 041246 473 DRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADG---CRSICSLKLCRNNFSDEALAAFLE--VSGDSLTELSLNHVR 547 (637)
Q Consensus 473 d~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~---~~~L~~L~Ls~~~ltd~~l~~l~~--~~~~~L~~L~Ls~c~ 547 (637)
+..+..+...-+.|+.|+|++++.|.+.+...++.. -+.|+.|+|++|.++|.+..++.. ....+|++|+|+++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N- 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN- 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-
Confidence 345666666678899999998668999988877754 458999999999999998655432 23478999999984
Q ss_pred CCCHHHHHHHHhC---CCCcceEeeecCC--CCCHHHHHHHH---hcCCCcCEEEeecC
Q 041246 548 GVGLNTALSLAKC---SRNLLSLDLSWCR--FIKDEALGFIV---DNCSLLRLLKLFGC 598 (637)
Q Consensus 548 ~l~~~~l~~l~~~---~~~L~~L~Ls~c~--~ltd~~l~~l~---~~cp~L~~L~L~~C 598 (637)
.|++.++..++.. -+.|++|+|++|. .+++.+...++ ..-+.|++|++..+
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 5899988887654 4679999998764 47887754444 45679999999754
No 116
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.16 E-value=1.2e-07 Score=94.80 Aligned_cols=178 Identities=19% Similarity=0.120 Sum_probs=109.0
Q ss_pred cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSR 485 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~ 485 (637)
+.++++++++ .++... .. -.+.|+.|+++++. +....... + ..+++|++|+|+++ .++...... ...+++
T Consensus 15 ~~~~l~~~~~-~l~~~p--~~--~~~~l~~L~L~~n~-l~~~~~~~-~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~ 84 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVP--SG--IPADTEKLDLQSTG-LATLSDAT-F-RGLTKLTWLNLDYN-QLQTLSAGV-FDDLTE 84 (251)
T ss_dssp GGTEEECTTC-CCSSCC--SC--CCTTCCEEECTTSC-CCCCCTTT-T-TTCTTCCEEECTTS-CCCCCCTTT-TTTCTT
T ss_pred CCeEEecCCC-CccccC--CC--CCCCCCEEEccCCC-cCccCHhH-h-cCcccCCEEECCCC-cCCccCHhH-hccCCc
Confidence 5667777765 222111 00 12579999998853 22211111 1 23789999999987 455422222 234789
Q ss_pred CCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcc
Q 041246 486 LCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLL 565 (637)
Q Consensus 486 L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~ 565 (637)
|+.|+|+++ .++.... ..+..+++|+.|+|++|.++......+ ...++|++|+|+++. ++... ......+++|+
T Consensus 85 L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~ 158 (251)
T 3m19_A 85 LGTLGLANN-QLASLPL-GVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQ-LQSIP-AGAFDKLTNLQ 158 (251)
T ss_dssp CCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred CCEEECCCC-cccccCh-hHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCCc-CCccC-HHHcCcCcCCC
Confidence 999999994 6663221 223568899999999998774221111 234789999999864 32110 11234678999
Q ss_pred eEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCC
Q 041246 566 SLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQI 601 (637)
Q Consensus 566 ~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~l 601 (637)
.|+|++|. ++..... .+..+++|+.|+|.+++--
T Consensus 159 ~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 159 TLSLSTNQ-LQSVPHG-AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp EEECCSSC-CSCCCTT-TTTTCTTCCEEECCSCCBC
T ss_pred EEECCCCc-CCccCHH-HHhCCCCCCEEEeeCCcee
Confidence 99999987 5533222 2356889999999988643
No 117
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.16 E-value=6.3e-09 Score=117.40 Aligned_cols=253 Identities=18% Similarity=0.092 Sum_probs=130.4
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHH-HHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGI-NLL 399 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l-~~L 399 (637)
.+|+.|++.++.. ... ....++.|+.+.+.++....... ...+++|+.|+++.+ .+...+. ...
T Consensus 328 ~~L~~L~l~~~~~--~~~--------~~~~l~~L~~l~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~~~~~~~~ 392 (635)
T 4g8a_A 328 FGWQHLELVNCKF--GQF--------PTLKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRN-GLSFKGCCSQS 392 (635)
T ss_dssp CCCSEEEEESCEE--SSC--------CCCBCTTCCEEEEESCCSCCBCC----CCBCTTCCEEECCSS-CCBEEEECCHH
T ss_pred hhhhhhhcccccc--cCc--------CcccchhhhhcccccccCCCCcc----cccccccccchhhcc-ccccccccccc
Confidence 5667777666541 110 11245666777666543211000 123577888888775 3322111 011
Q ss_pred HHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHH
Q 041246 400 VKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFV 479 (637)
Q Consensus 400 ~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l 479 (637)
.... .+|+.|++..+..... ...+..+++|+.+++..+..........+ ..+++|+.++++.+. ++.. ....
T Consensus 393 ~~~~-~~L~~L~~~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~~~~~~~~--~~l~~l~~l~ls~n~-l~~~-~~~~ 464 (635)
T 4g8a_A 393 DFGT-ISLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLRNLIYLDISHTH-TRVA-FNGI 464 (635)
T ss_dssp HHSC-SCCCEEECCSCSEEEE---CSCCTTCTTCCEEECTTSEEESTTSSCTT--TTCTTCCEEECTTSC-CEEC-CTTT
T ss_pred hhhh-hhhhhhhccccccccc---cccccccccccchhhhhcccccccccccc--ccccccccccccccc-cccc-cccc
Confidence 1112 2677787776643221 12244677788888766432221111111 235778888887653 3211 1122
Q ss_pred HhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHh
Q 041246 480 GKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAK 559 (637)
Q Consensus 480 ~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~ 559 (637)
...++.|+.|+++++..... ........+++|+.|+|++|+++...-..+ ...++|+.|+|+++. ++... .....
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f--~~l~~L~~L~Ls~N~-l~~l~-~~~~~ 539 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNN-FFSLD-TFPYK 539 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSC-CCBCC-CGGGT
T ss_pred cccchhhhhhhhhhcccccc-cCchhhhhccccCEEECCCCccCCcChHHH--cCCCCCCEEECCCCc-CCCCC-hhHHh
Confidence 33467788888887532211 111223457788888888887764321112 123688888888753 22110 01234
Q ss_pred CCCCcceEeeecCCCCCHHHHHHHHhcC-CCcCEEEeecCCCCCh
Q 041246 560 CSRNLLSLDLSWCRFIKDEALGFIVDNC-SLLRLLKLFGCSQITN 603 (637)
Q Consensus 560 ~~~~L~~L~Ls~c~~ltd~~l~~l~~~c-p~L~~L~L~~C~~ltd 603 (637)
.+++|++|+|++|. ++......+ ..+ ++|+.|+|++++-.-|
T Consensus 540 ~l~~L~~L~Ls~N~-l~~~~~~~l-~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 540 CLNSLQVLDYSLNH-IMTSKKQEL-QHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TCTTCCEEECTTSC-CCBCCSSCT-TCCCTTCCEEECTTCCBCCS
T ss_pred CCCCCCEEECCCCc-CCCCCHHHH-HhhhCcCCEEEeeCCCCccc
Confidence 67888888888886 543322222 234 5788888877654433
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.06 E-value=5e-07 Score=85.23 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=18.4
Q ss_pred CCCCcceEeeecCCCCCHHH--HHHHHhcCCCcCEEEeecC
Q 041246 560 CSRNLLSLDLSWCRFIKDEA--LGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 560 ~~~~L~~L~Ls~c~~ltd~~--l~~l~~~cp~L~~L~L~~C 598 (637)
.+++|+.|++++|. ++... -..+...+|+|+.|++.+|
T Consensus 111 ~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 111 SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 45556666665554 32111 0112345666666666655
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=6.4e-08 Score=108.92 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=19.2
Q ss_pred CCCCcceEeeecCCCCCHHH-HHHHHhcCCCcCEEEeecC
Q 041246 560 CSRNLLSLDLSWCRFIKDEA-LGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 560 ~~~~L~~L~Ls~c~~ltd~~-l~~l~~~cp~L~~L~L~~C 598 (637)
.+++|+.|+|++|. ++... ... +..+++|+.|+|++|
T Consensus 506 ~l~~L~~L~Ls~N~-l~~~~~p~~-l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 506 NLPRLQELLLCNNR-LQQSAAIQP-LVSCPRLVLLNLQGN 543 (567)
T ss_dssp TCSSCCEEECCSSC-CCSSSTTGG-GGGCTTCCEEECTTS
T ss_pred CCCCCcEEECCCCC-CCCCCCcHH-HhcCCCCCEEEecCC
Confidence 45566666666654 44322 112 234666666666665
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.02 E-value=1.6e-06 Score=97.46 Aligned_cols=186 Identities=18% Similarity=0.155 Sum_probs=107.1
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLV 400 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~ 400 (637)
.+|+.|+|+++. ++. +. ..-+++|++|+|+++. ++. +. ..+++|++|++++| .++. +..
T Consensus 59 ~~L~~L~Ls~n~--L~~--lp------~~l~~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~Ls~N-~l~~--ip~-- 117 (571)
T 3cvr_A 59 NQFSELQLNRLN--LSS--LP------DNLPPQITVLEITQNA-LIS--LP---ELPASLEYLDACDN-RLST--LPE-- 117 (571)
T ss_dssp TTCSEEECCSSC--CSC--CC------SCCCTTCSEEECCSSC-CSC--CC---CCCTTCCEEECCSS-CCSC--CCC--
T ss_pred CCccEEEeCCCC--CCc--cC------HhHcCCCCEEECcCCC-Ccc--cc---cccCCCCEEEccCC-CCCC--cch--
Confidence 688888888776 332 11 1124678888888863 332 11 34688888888886 4443 111
Q ss_pred HhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHH
Q 041246 401 KHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVG 480 (637)
Q Consensus 401 ~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~ 480 (637)
.+.+|+.|++++|. ++.. .. .+++|+.|+++++. ++. +. ..+++|++|+|++|. ++. +..+
T Consensus 118 --l~~~L~~L~Ls~N~-l~~l--p~---~l~~L~~L~Ls~N~-l~~--lp----~~l~~L~~L~Ls~N~-L~~--lp~l- 178 (571)
T 3cvr_A 118 --LPASLKHLDVDNNQ-LTML--PE---LPALLEYINADNNQ-LTM--LP----ELPTSLEVLSVRNNQ-LTF--LPEL- 178 (571)
T ss_dssp --CCTTCCEEECCSSC-CSCC--CC---CCTTCCEEECCSSC-CSC--CC----CCCTTCCEEECCSSC-CSC--CCCC-
T ss_pred --hhcCCCEEECCCCc-CCCC--CC---cCccccEEeCCCCc-cCc--CC----CcCCCcCEEECCCCC-CCC--cchh-
Confidence 22278888888873 3332 11 57888888888853 322 11 136788888888874 543 1112
Q ss_pred hcCCCCCEEEEcCCCCCCHHHH--HHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHH
Q 041246 481 KKCSRLCALDLSHLDNLTDATV--QYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNT 553 (637)
Q Consensus 481 ~~c~~L~~L~L~~c~~itd~~l--~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~ 553 (637)
.++|+.|+|++| .++..+. ..+....+.|+.|+|++|.++. +..-+. ..++|+.|+|+++. ++...
T Consensus 179 --~~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~-~l~~L~~L~L~~N~-l~~~~ 246 (571)
T 3cvr_A 179 --PESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITH--IPENIL-SLDPTCTIILEDNP-LSSRI 246 (571)
T ss_dssp --CTTCCEEECCSS-CCSSCCCCC--------CCEEEECCSSCCCC--CCGGGG-GSCTTEEEECCSSS-CCHHH
T ss_pred --hCCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCCccee--cCHHHh-cCCCCCEEEeeCCc-CCCcC
Confidence 278888888884 5552111 0111122333888888888763 211111 24788888888864 44433
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=7.7e-07 Score=92.70 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCC-CCCCHHHHHHHHhCC
Q 041246 483 CSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHV-RGVGLNTALSLAKCS 561 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c-~~l~~~~l~~l~~~~ 561 (637)
..++..+.+.+ .+....+..+...|++|+.|+|+.|+++.-+-.+| ..|.+|+.|.|.+. ..|... ....|
T Consensus 201 ~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF--~~~~~L~~l~l~~ni~~I~~~----aF~~~ 272 (329)
T 3sb4_A 201 PRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF--AQKKYLLKIKLPHNLKTIGQR----VFSNC 272 (329)
T ss_dssp GGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT--TTCTTCCEEECCTTCCEECTT----TTTTC
T ss_pred ccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh--hCCCCCCEEECCcccceehHH----HhhCC
Confidence 35567777776 36666677777778999999999877654332233 34578999999762 222221 23568
Q ss_pred CCcc-eEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhhhhcccccceeeecCCCCCCCCeee
Q 041246 562 RNLL-SLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVFLNGHSNSMVQIIGLPLTPALKHIQ 629 (637)
Q Consensus 562 ~~L~-~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~l~~ls~~~l~i~g~~~lp~L~~L~ 629 (637)
++|+ .|.+.+ .++.-+- ..+.+|++|+.|++.+. .++...-.. -..|++|+.|.
T Consensus 273 ~~L~~~l~l~~--~l~~I~~-~aF~~c~~L~~l~l~~n-~i~~I~~~a----------F~~~~~L~~ly 327 (329)
T 3sb4_A 273 GRLAGTLELPA--SVTAIEF-GAFMGCDNLRYVLATGD-KITTLGDEL----------FGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEEEECT--TCCEECT-TTTTTCTTEEEEEECSS-CCCEECTTT----------TCTTCCCCEEE
T ss_pred hhccEEEEEcc--cceEEch-hhhhCCccCCEEEeCCC-ccCccchhh----------hcCCcchhhhc
Confidence 8898 999976 2432221 22457999999998654 344332221 23467777764
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=1.7e-07 Score=97.73 Aligned_cols=275 Identities=15% Similarity=0.126 Sum_probs=153.1
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHhhCCCCCeeEEEeecCCCC---CChHHHH----------HHHHHhccC--------CC
Q 041246 294 SPTEIRLNDCSEINTDDFTRIFGACDKKNLIVLQLDLCGRI---LTENVII----------NTIVTQNFS--------LP 352 (637)
Q Consensus 294 ~l~~L~Ls~c~~l~~~~l~~l~~~c~~~nL~~L~Ls~~~~~---l~d~~l~----------~il~~~~~~--------l~ 352 (637)
.+++|.+++. +....+..+...+ ++|+.|+|+++... ..+..+. .+-...+.+ |+
T Consensus 26 ~l~~L~l~g~--i~~~~~~~l~~~l--~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 26 SITHLTLTGK--LNAEDFRHLRDEF--PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HCSEEEEEEE--ECHHHHHHHHHSC--TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred ceeEEEEecc--ccHHHHHHHHHhh--ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 4678888863 5566666655434 88999999876521 0000000 011123446 88
Q ss_pred CccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCC--CCChhHHHHHHHhhcccceEEeccCCCccch-hcH-HHHHh
Q 041246 353 ALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCS--LLTNEGINLLVKHLKSTLRVLYIDHCQNIDA-VSM-LPALR 428 (637)
Q Consensus 353 ~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~--~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~-~~l-~~~l~ 428 (637)
+|+.|+|.. .++.-+-. .+..|++|+.|++.++. .+....+ . .|. ++..+.+........ ..+ ...+.
T Consensus 102 ~L~~l~L~~--~i~~I~~~-aF~~~~~L~~l~l~~n~i~~i~~~aF---~-~~~-~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 102 TLEKVILSE--KIKNIEDA-AFKGCDNLKICQIRKKTAPNLLPEAL---A-DSV-TAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp TCCC-CBCT--TCCEECTT-TTTTCTTCCEEEBCCSSCCEECTTSS---C-TTT-CEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred CCcEEECCc--cccchhHH-HhhcCcccceEEcCCCCccccchhhh---c-CCC-ceEEecCcchhhhhccccccccccc
Confidence 888888876 22221111 13567888888888752 1222222 1 132 455555543110000 000 01123
Q ss_pred cCCCCc-EEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHh
Q 041246 429 KLNCLE-VLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLAD 507 (637)
Q Consensus 429 ~l~~L~-~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~ 507 (637)
.+..|+ .+.+.....+....+.. .....++..+.+.+ .+....+..+...|++|+.|+|.++ .++..+-. .+.
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~--~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~-aF~ 247 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKA--GLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDF-TFA 247 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHT--TCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT-TTT
T ss_pred cccccceeEEecCCCcHHHHHhhc--ccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHh-hhh
Confidence 556666 55555533332221111 01246788888887 4777778888788999999999984 45533222 236
Q ss_pred cCCCCCEEEeccCCCCHHHHHHHHHhcCCCcc-EEEcCC-CCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHh
Q 041246 508 GCRSICSLKLCRNNFSDEALAAFLEVSGDSLT-ELSLNH-VRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVD 585 (637)
Q Consensus 508 ~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~-~L~Ls~-c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~ 585 (637)
+|.+|+.|+|..+ +..-+-.+| ..|.+|+ .|.|.+ ...+... ....|++|+.|+++.+. ++.-+-. .+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF--~~~~~L~~~l~l~~~l~~I~~~----aF~~c~~L~~l~l~~n~-i~~I~~~-aF~ 318 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVF--SNCGRLAGTLELPASVTAIEFG----AFMGCDNLRYVLATGDK-ITTLGDE-LFG 318 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTT--TTCTTCCEEEEECTTCCEECTT----TTTTCTTEEEEEECSSC-CCEECTT-TTC
T ss_pred CCCCCCEEECCcc-cceehHHHh--hCChhccEEEEEcccceEEchh----hhhCCccCCEEEeCCCc-cCccchh-hhc
Confidence 7999999999876 432222222 3457899 999985 2223322 33578999999997665 4432222 245
Q ss_pred cCCCcCEEEe
Q 041246 586 NCSLLRLLKL 595 (637)
Q Consensus 586 ~cp~L~~L~L 595 (637)
+|++|+.|..
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 7899998853
No 123
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.96 E-value=7.9e-07 Score=100.10 Aligned_cols=203 Identities=20% Similarity=0.143 Sum_probs=103.0
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCC
Q 041246 352 PALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLN 431 (637)
Q Consensus 352 ~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~ 431 (637)
+++++|+|+++ .++.-.-. .+..+++|++|+|++| .++.-.-..+ ..++ +|++|+|++|. ++... ...+.+++
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~-~f~~l~~L~~L~Ls~N-~i~~i~~~~f-~~L~-~L~~L~Ls~N~-l~~l~-~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDGAY-QSLS-HLSTLILTGNP-IQSLA-LGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTTT-TTCT-TCCEEECTTCC-CCEEC-GGGGTTCT
T ss_pred cCCCEEEeeCC-CCCCCCHH-HHhCCCCCCEEECCCC-cCCCcChhHh-cCCC-CCCEEEccCCc-CCCCC-HHHhcCCC
Confidence 36888888885 34321111 1245788888888886 4442211111 1233 78888888873 33211 22356778
Q ss_pred CCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCC---HHHHHHHHhc
Q 041246 432 CLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLT---DATVQYLADG 508 (637)
Q Consensus 432 ~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~it---d~~l~~L~~~ 508 (637)
+|++|+++++. +....-.. + ..+++|++|+++++. ++...+......+++|+.|+++++ .++ ...+..+...
T Consensus 125 ~L~~L~Ls~N~-l~~l~~~~-~-~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 125 SLQKLVAVETN-LASLENFP-I-GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM 199 (635)
T ss_dssp TCCEEECTTSC-CCCSTTCC-C-TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTC
T ss_pred CCCEEECCCCc-CCCCChhh-h-hcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc-cccccccccccchhhh
Confidence 88888887752 22110000 1 236778888887753 432222223334677777877774 443 2334444333
Q ss_pred CCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeee
Q 041246 509 CRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLS 570 (637)
Q Consensus 509 ~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls 570 (637)
...+..++++.|.++......+ ....+..|.+.+.. ............++.|+...+.
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~---~~~~~~~l~l~~n~-~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAF---KEIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTT---TTCEEEEEEEESCC-SSHHHHHHHHHTTTTCEEEEEE
T ss_pred hhhhhhhhcccCcccccCcccc---cchhhhhhhhhccc-ccccccchhhcCCccccccccc
Confidence 3345567777666543111111 11345556665432 2222233334455666655553
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.84 E-value=4.9e-07 Score=95.58 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=36.4
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCC
Q 041246 352 PALTTISLTGAYQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLN 431 (637)
Q Consensus 352 ~~L~~L~Ls~~~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~ 431 (637)
+.|+.|+|+++ .++......+...+++|++|+|++| .++......+. .++ +|+.|+|++|. +.... ...+..++
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~-~l~-~L~~L~Ls~N~-l~~~~-~~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFV-PVP-NLRYLDLSSNH-LHTLD-EFLFSDLQ 112 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTT-TCT-TCCEEECCSSC-CCEEC-TTTTTTCT
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhcc-CCC-CCCEEECCCCc-CCcCC-HHHhCCCc
Confidence 34667777765 2332111111114566677776664 33322111111 122 56666666652 22110 11234555
Q ss_pred CCcEEeccC
Q 041246 432 CLEVLSVAG 440 (637)
Q Consensus 432 ~L~~L~Ls~ 440 (637)
+|+.|+|++
T Consensus 113 ~L~~L~L~~ 121 (361)
T 2xot_A 113 ALEVLLLYN 121 (361)
T ss_dssp TCCEEECCS
T ss_pred CCCEEECCC
Confidence 555555555
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.81 E-value=1.6e-06 Score=83.36 Aligned_cols=35 Identities=17% Similarity=0.038 Sum_probs=21.0
Q ss_pred hCCCCcceEeeecCCCCCHH---------HHHHHHhcCCCcCEEE
Q 041246 559 KCSRNLLSLDLSWCRFIKDE---------ALGFIVDNCSLLRLLK 594 (637)
Q Consensus 559 ~~~~~L~~L~Ls~c~~ltd~---------~l~~l~~~cp~L~~L~ 594 (637)
..+++|++|++++|. ++.. ....+...+++|+.|+
T Consensus 137 ~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 137 AALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred hcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 346677777777665 4322 1233445788888886
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.80 E-value=1.7e-08 Score=106.32 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=53.3
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCC
Q 041246 458 LNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDS 537 (637)
Q Consensus 458 ~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~ 537 (637)
..|+.|+++++ .++..... .-...+|+.|++.+++.++...-. .+..+++|+.|+|++|+++.-.. ....+
T Consensus 154 ~~l~~L~L~~N-~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N~l~~lp~-----~~~~~ 224 (350)
T 4ay9_X 154 FESVILWLNKN-GIQEIHNS--AFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRTRIHSLPS-----YGLEN 224 (350)
T ss_dssp SSCEEEECCSS-CCCEECTT--SSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTSCCCCCCS-----SSCTT
T ss_pred hhhhhhccccc-cccCCChh--hccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCCCcCccCh-----hhhcc
Confidence 45677777764 34421111 112346777777765555432211 22456778888887777653211 12246
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeec
Q 041246 538 LTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSW 571 (637)
Q Consensus 538 L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~ 571 (637)
|+.|.+.++..+... . -...+++|+.+++.+
T Consensus 225 L~~L~~l~~~~l~~l--P-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTYNLKKL--P-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCTTCCCC--C-CTTTCCSCCEEECSC
T ss_pred chHhhhccCCCcCcC--C-CchhCcChhhCcCCC
Confidence 677776665544321 1 123566777777754
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.80 E-value=3.7e-07 Score=88.35 Aligned_cols=30 Identities=17% Similarity=0.003 Sum_probs=16.2
Q ss_pred CCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecC
Q 041246 560 CSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 560 ~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C 598 (637)
.+++|+.|+|++|. ++ ..|++|+.|+++++
T Consensus 146 ~l~~L~~L~l~~N~-~~--------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 146 RLTSLQYIWLHDNP-WD--------CTCPGIRYLSEWIN 175 (208)
T ss_dssp TCTTCCEEECCSCC-BC--------CCTTTTHHHHHHHH
T ss_pred cCCCccEEEecCCC-ee--------cCCCCHHHHHHHHH
Confidence 35566666666664 21 24555555555554
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.78 E-value=9.1e-07 Score=87.31 Aligned_cols=131 Identities=17% Similarity=0.100 Sum_probs=69.9
Q ss_pred CCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCC
Q 041246 431 NCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCR 510 (637)
Q Consensus 431 ~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~ 510 (637)
++|++|+++++. +....... + ..+++|++|+|+++. ++.... .....+++|+.|+|+++ .++...- ..+..++
T Consensus 40 ~~L~~L~Ls~n~-i~~~~~~~-~-~~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLEPGV-F-DSLINLKELYLGSNQ-LGALPV-GVFDSLTQLTVLDLGTN-QLTVLPS-AVFDRLV 112 (229)
T ss_dssp TTCSEEECCSSC-CCCCCTTT-T-TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred CCCCEEEcCCCc-cCccCHHH-h-hCccCCcEEECCCCC-CCCcCh-hhcccCCCcCEEECCCC-cCCccCh-hHhCcch
Confidence 678888888743 22211001 1 236788888888763 432211 12234677888888874 5553211 1224577
Q ss_pred CCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 511 SICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 511 ~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
+|+.|+|++|.++.. ...+ ...++|+.|+|+++. ++... ......+++|+.|+|++|+
T Consensus 113 ~L~~L~Ls~N~l~~l--p~~~-~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCCNKLTEL--PRGI-ERLTHLTHLALDQNQ-LKSIP-HGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCSSCCCSC--CTTG-GGCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECTTSC
T ss_pred hhCeEeccCCccccc--Cccc-ccCCCCCEEECCCCc-CCccC-HHHHhCCCCCCEEEeeCCC
Confidence 888888888776621 1101 223667777777643 22100 0122345667777776665
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.75 E-value=7.7e-06 Score=76.95 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=7.0
Q ss_pred cCCCCCEEEEcC
Q 041246 482 KCSRLCALDLSH 493 (637)
Q Consensus 482 ~c~~L~~L~L~~ 493 (637)
.+++|+.|++++
T Consensus 138 ~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 138 KVPQVRVLDFQK 149 (176)
T ss_dssp HCTTCSEETTEE
T ss_pred HCCccceeCCCc
Confidence 356666666655
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.70 E-value=7.3e-07 Score=87.52 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=8.9
Q ss_pred CCCCcceEeeecCC
Q 041246 560 CSRNLLSLDLSWCR 573 (637)
Q Consensus 560 ~~~~L~~L~Ls~c~ 573 (637)
.+++|+.|+|++|+
T Consensus 151 ~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 151 TLHSLSTLNLLANP 164 (220)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEecCcC
Confidence 35666677766665
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.69 E-value=1.9e-06 Score=83.37 Aligned_cols=87 Identities=20% Similarity=0.117 Sum_probs=46.1
Q ss_pred cCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcC
Q 041246 508 GCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNC 587 (637)
Q Consensus 508 ~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c 587 (637)
.+++|++|+|++|.++......+ ...++|++|+|+++. ++.. .......+++|++|+|++|. ++.... ..+..+
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l 147 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKELALNTNQ-LQSL-PDGVFDKLTQLKDLRLYQNQ-LKSVPD-GVFDRL 147 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTC
T ss_pred CCCCcCEEECCCCcCCccCHhHh--cCccCCCEEEcCCCc-Cccc-CHhHhccCCcCCEEECCCCc-cceeCH-HHhccC
Confidence 34555555555554432111001 112455555555432 1110 00122457899999999886 553221 223568
Q ss_pred CCcCEEEeecCCC
Q 041246 588 SLLRLLKLFGCSQ 600 (637)
Q Consensus 588 p~L~~L~L~~C~~ 600 (637)
++|+.|++.+++.
T Consensus 148 ~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 148 TSLQYIWLHDNPW 160 (208)
T ss_dssp TTCCEEECCSCCB
T ss_pred CCccEEEecCCCe
Confidence 9999999999753
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.65 E-value=1e-05 Score=77.57 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=16.8
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCC
Q 041246 483 CSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNF 522 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~l 522 (637)
+++|+.|+++++ .++..........+++|+.|++++|.+
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 344555555552 343322111223455555555555543
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.61 E-value=1.7e-06 Score=84.86 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=63.7
Q ss_pred CCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCC
Q 041246 431 NCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCR 510 (637)
Q Consensus 431 ~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~ 510 (637)
++|+.|++++.. +....... + ..+++|+.|+|+++ .++......+ ..+++|+.|+|+++ .++.... ..+..++
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~-~-~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGA-F-SPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGN-KITELPK-SLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTS-S-TTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred cCCCEEECCCCc-CCCcCHhH-h-hCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCC-cCCccCH-hHccCCC
Confidence 467788877742 22111001 1 22567777777765 3443211222 23677777777773 5542211 1224567
Q ss_pred CCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 511 SICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 511 ~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
+|+.|+|++|.++......+ ...++|+.|+|+++.--+. . ......+++|+.|+|++|+
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~-~-~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAF--QDLHNLNLLSLYDNKLQTI-A-KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCC-C-TTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCEeCHHHc--CCCCCCCEEECCCCcCCEE-C-HHHHhCCCCCCEEEeCCCC
Confidence 77777777776653211111 1125666666665431110 0 0112235556666666554
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.59 E-value=1.7e-06 Score=84.94 Aligned_cols=91 Identities=21% Similarity=0.111 Sum_probs=49.0
Q ss_pred cCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcC
Q 041246 508 GCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNC 587 (637)
Q Consensus 508 ~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c 587 (637)
.+++|+.|+|++|.++......+ ...++|++|+|+++.- +... ......+++|+.|+|++|. ++...... +..+
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l-~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l 152 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMF--KGLESLKTLMLRSNRI-TCVG-NDSFIGLSSVRLLSLYDNQ-ITTVAPGA-FDTL 152 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGG--TTCSSCCEEECTTSCC-CCBC-TTSSTTCTTCSEEECTTSC-CCCBCTTT-TTTC
T ss_pred CCCCCCEEECCCCccCccCHhHh--cCCcCCCEEECCCCcC-CeEC-HhHcCCCccCCEEECCCCc-CCEECHHH-hcCC
Confidence 34555555555555432211111 1224555666555331 1100 0112357889999999886 55432222 3468
Q ss_pred CCcCEEEeecCCCCChh
Q 041246 588 SLLRLLKLFGCSQITNV 604 (637)
Q Consensus 588 p~L~~L~L~~C~~ltd~ 604 (637)
++|+.|+|.+++-..+.
T Consensus 153 ~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 153 HSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTCCEEECCSCCEECSG
T ss_pred CCCCEEEecCcCCcCCC
Confidence 99999999998654443
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.59 E-value=5.2e-06 Score=81.80 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=7.1
Q ss_pred CCCCEEEecCC
Q 041246 378 SALQSVNLSQC 388 (637)
Q Consensus 378 ~~L~~L~Ls~c 388 (637)
++|++|+|++|
T Consensus 40 ~~L~~L~Ls~n 50 (229)
T 3e6j_A 40 TNAQILYLHDN 50 (229)
T ss_dssp TTCSEEECCSS
T ss_pred CCCCEEEcCCC
Confidence 55666666665
No 136
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.57 E-value=1.3e-06 Score=92.24 Aligned_cols=176 Identities=16% Similarity=0.047 Sum_probs=96.3
Q ss_pred CEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHh-cCCCCcEEeccCCcCCCHHHHHHHHHHcCCC
Q 041246 381 QSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALR-KLNCLEVLSVAGIETVDDYFVTEIVRAHCLN 459 (637)
Q Consensus 381 ~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~-~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~ 459 (637)
+.++++++ .++. +....+..++.|+|+++ .++... ...+. .+++|+.|+|+++. +....... + ..+++
T Consensus 21 ~~l~c~~~-~l~~-----iP~~~~~~l~~L~Ls~N-~l~~l~-~~~~~~~l~~L~~L~L~~N~-i~~i~~~~-~-~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQ-QLPN-----VPQSLPSYTALLDLSHN-NLSRLR-AEWTPTRLTNLHSLLLSHNH-LNFISSEA-F-VPVPN 89 (361)
T ss_dssp TEEECCSS-CCSS-----CCSSCCTTCSEEECCSS-CCCEEC-TTSSSSCCTTCCEEECCSSC-CCEECTTT-T-TTCTT
T ss_pred CEEEeCCC-CcCc-----cCccCCCCCCEEECCCC-CCCccC-hhhhhhcccccCEEECCCCc-CCccChhh-c-cCCCC
Confidence 46666664 3332 22234457899999988 344321 12233 78899999998742 32211111 1 23688
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHH-hcCCCc
Q 041246 460 MRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLE-VSGDSL 538 (637)
Q Consensus 460 L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~-~~~~~L 538 (637)
|++|+|+++ .++..... ....+++|+.|+|+++ .++..... .+..+++|+.|+|++|.++......+.. ...++|
T Consensus 90 L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 90 LRYLDLSSN-HLHTLDEF-LFSDLQALEVLLLYNN-HIVVVDRN-AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp CCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCEEECCCC-cCCcCCHH-HhCCCcCCCEEECCCC-cccEECHH-HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 999999886 45432111 2234788889998884 66532211 2246788888888888776422111100 123677
Q ss_pred cEEEcCCCCCCCHHHHHHHHhCCCC--cceEeeecCC
Q 041246 539 TELSLNHVRGVGLNTALSLAKCSRN--LLSLDLSWCR 573 (637)
Q Consensus 539 ~~L~Ls~c~~l~~~~l~~l~~~~~~--L~~L~Ls~c~ 573 (637)
+.|+|+++. ++..... ....++. |+.|+|++|+
T Consensus 166 ~~L~L~~N~-l~~l~~~-~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 166 MLLDLSSNK-LKKLPLT-DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CEEECCSSC-CCCCCHH-HHHHSCHHHHTTEECCSSC
T ss_pred CEEECCCCC-CCccCHH-HhhhccHhhcceEEecCCC
Confidence 777777643 2211111 1122344 4677777766
No 137
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.53 E-value=6.6e-06 Score=80.58 Aligned_cols=139 Identities=19% Similarity=0.132 Sum_probs=90.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
.++|+.|+|+++ .++...... ...+++|+.|+|+++ .++...... +.++++|+.|+|++|.++...-..+ ...+
T Consensus 31 ~~~l~~L~l~~n-~i~~i~~~~-~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f--~~l~ 104 (220)
T 2v9t_B 31 PETITEIRLEQN-TIKVIPPGA-FSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGNKITELPKSLF--EGLF 104 (220)
T ss_dssp CTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSSCCCCCCTTTT--TTCT
T ss_pred CcCCCEEECCCC-cCCCcCHhH-hhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCCcCCccCHhHc--cCCC
Confidence 468999999986 455322212 234789999999994 666432222 3568999999999998774221111 2347
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCChhh
Q 041246 537 SLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQITNVF 605 (637)
Q Consensus 537 ~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~ltd~~ 605 (637)
+|+.|+|+++. ++... ......+++|+.|+|++|. ++..... .+..+++|+.|+|.+++-.-+..
T Consensus 105 ~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 105 SLQLLLLNANK-INCLR-VDAFQDLHNLNLLSLYDNK-LQTIAKG-TFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCEEECCCCC-CCEeC-HHHcCCCCCCCEEECCCCc-CCEECHH-HHhCCCCCCEEEeCCCCcCCCCc
Confidence 99999999864 22110 1123467899999999987 5543322 23468899999999886554443
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.11 E-value=1.2e-05 Score=76.80 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=48.3
Q ss_pred cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSR 485 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~ 485 (637)
+|+.|+++++ .+........+..+++|++|+++++. +....... + ..+++|++|+|+++ .++......+ ..+++
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~-~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNA-F-EGASHIQELQLGEN-KIKEISNKMF-LGLHQ 103 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTT-T-TTCTTCCEEECCSC-CCCEECSSSS-TTCTT
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhH-c-CCcccCCEEECCCC-cCCccCHHHh-cCCCC
Confidence 4555555555 22211100123456666666666532 21110000 1 12456666666654 3432211111 23566
Q ss_pred CCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC
Q 041246 486 LCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 486 L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
|+.|+|+++ .++..... ....+++|+.|+|++|.+.
T Consensus 104 L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 104 LKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCCBC
T ss_pred CCEEECCCC-cCCeeCHH-HhhcCCCCCEEEeCCCCcc
Confidence 666666663 44421111 1134566666666666554
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.07 E-value=3.4e-05 Score=73.89 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=49.8
Q ss_pred cceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 041246 406 TLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSR 485 (637)
Q Consensus 406 ~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~ 485 (637)
+|+.|+++++ .++. +...+..+++|+.|+++++. ++...... + ..+++|++|+|+++ .++......+ ..+++
T Consensus 32 ~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~-f-~~l~~L~~L~Ls~N-~l~~i~~~~f-~~l~~ 103 (193)
T 2wfh_A 32 DVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR-ISTLSNQS-F-SNMTQLLTLILSYN-RLRCIPPRTF-DGLKS 103 (193)
T ss_dssp TCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC-CCCCCTTT-T-TTCTTCCEEECCSS-CCCBCCTTTT-TTCTT
T ss_pred CCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc-CCEeCHhH-c-cCCCCCCEEECCCC-ccCEeCHHHh-CCCCC
Confidence 5666666655 2222 11344566666666666632 21110000 1 12466666666654 2332211111 23566
Q ss_pred CCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCC
Q 041246 486 LCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNF 522 (637)
Q Consensus 486 L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~l 522 (637)
|+.|+|+++ .++.... ..+..+++|+.|+|++|.+
T Consensus 104 L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 104 LRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCCe
Confidence 666666663 4442111 1123456666666666654
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.98 E-value=0.00015 Score=81.34 Aligned_cols=196 Identities=15% Similarity=0.131 Sum_probs=115.9
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCCCC------------CCHHHHHHHHHhCCCCCEEE-ecC
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGAYQ------------LTDFGLSKLARSASALQSVN-LSQ 387 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~~~------------isd~~l~~L~~~~~~L~~L~-Ls~ 387 (637)
++|+.|+|+ ++.+..+ +..+..|++|+.|+++++.. ... ........+++|+.|+ ++.
T Consensus 349 ~~L~~L~Ls-------~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~-~~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 349 EQLFRCELS-------VEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp TTSSSCCCC-------HHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG-GHHHHHHHHHHHHHHCGGGH
T ss_pred ccceeccCC-------hhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhccccc-CCHHHHHHHHhcccCcchhh
Confidence 445555544 3444433 33455778888888765421 110 1112234456777777 443
Q ss_pred CCCCCh--------hHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccCCcCCCHHHHHHHHHHcCCC
Q 041246 388 CSLLTN--------EGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAGIETVDDYFVTEIVRAHCLN 459 (637)
Q Consensus 388 c~~ls~--------~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~l~~ll~~~~~~ 459 (637)
+ .+.+ ..+..+. +..|+.|++++| .++.. .. +..+++|+.|+++++. ++. +...+ ..+++
T Consensus 420 n-~~~~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n-~l~~l--p~-~~~l~~L~~L~Ls~N~-l~~--lp~~~-~~l~~ 487 (567)
T 1dce_A 420 A-YLDDLRSKFLLENSVLKME---YADVRVLHLAHK-DLTVL--CH-LEQLLLVTHLDLSHNR-LRA--LPPAL-AALRC 487 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHHH---HTTCSEEECTTS-CCSSC--CC-GGGGTTCCEEECCSSC-CCC--CCGGG-GGCTT
T ss_pred c-ccchhhhhhhhcccccccC---ccCceEEEecCC-CCCCC--cC-ccccccCcEeecCccc-ccc--cchhh-hcCCC
Confidence 2 2111 1222222 237999999998 44432 22 7789999999999853 331 11112 34799
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHH--HHHHHHHhcCCC
Q 041246 460 MRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDE--ALAAFLEVSGDS 537 (637)
Q Consensus 460 L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~--~l~~l~~~~~~~ 537 (637)
|+.|+|+++ .++. +..+ ..+++|+.|+|+++ .++..........+++|+.|+|++|.++.. .+..+. ...++
T Consensus 488 L~~L~Ls~N-~l~~--lp~l-~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~-~~lp~ 561 (567)
T 1dce_A 488 LEVLQASDN-ALEN--VDGV-ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA-EMLPS 561 (567)
T ss_dssp CCEEECCSS-CCCC--CGGG-TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH-HHCTT
T ss_pred CCEEECCCC-CCCC--Cccc-CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH-HHCcc
Confidence 999999987 4664 3333 45899999999994 676542122235789999999999987643 111121 22488
Q ss_pred ccEEEc
Q 041246 538 LTELSL 543 (637)
Q Consensus 538 L~~L~L 543 (637)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 998864
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.71 E-value=0.00013 Score=69.72 Aligned_cols=108 Identities=19% Similarity=0.078 Sum_probs=61.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
.++|++|+|+++ .++... .....+++|+.|+|+++ .++...... +.++++|+.|+|++|.++......+ ...+
T Consensus 30 ~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~~~~f--~~l~ 102 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYNRLRCIPPRTF--DGLK 102 (193)
T ss_dssp CTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCCCBCCTTTT--TTCT
T ss_pred CCCCCEEECCCC-cCchhH--HHhhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCCccCEeCHHHh--CCCC
Confidence 468889998876 455221 22345788888888884 565422222 2467888888888887664221111 1235
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 537 SLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 537 ~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
+|+.|+|+++. ++.. .......+++|+.|+|++|+
T Consensus 103 ~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 103 SLRLLSLHGND-ISVV-PEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSSC-CCBC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCC-CCee-ChhhhhcCccccEEEeCCCC
Confidence 67777777643 2210 00122345667777776665
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.65 E-value=0.00013 Score=68.35 Aligned_cols=109 Identities=18% Similarity=0.072 Sum_probs=62.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
.++|++|+++++. ++.... .....+++|+.|+++++ .++.... .....+++|+.|+|++|.++......+ ...+
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~ 100 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHENKLQSLPNGVF--DKLT 100 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT--TTCT
T ss_pred CCCCcEEEeCCCc-ccEeCH-HHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCCCccccCHHHh--hCCc
Confidence 4688999998863 543211 12234788899998884 5653211 122467888888888887763211111 1236
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 537 SLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 537 ~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
+|++|+|+++. ++.. ...+...+++|++|+|++|+
T Consensus 101 ~L~~L~l~~N~-l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 101 QLKELALDTNQ-LKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSC-CSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECcCCc-ceEe-CHHHhcCCcccCEEEecCCC
Confidence 77777777653 2210 01122346677777777776
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.64 E-value=5e-05 Score=72.52 Aligned_cols=110 Identities=20% Similarity=0.187 Sum_probs=61.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
..+|++|+++++ .++..........+++|+.|+|+++ .++..... .+..+++|+.|+|++|.++......+ ...+
T Consensus 28 ~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~ 102 (192)
T 1w8a_A 28 PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPN-AFEGASHIQELQLGENKIKEISNKMF--LGLH 102 (192)
T ss_dssp CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSCCCCEECSSSS--TTCT
T ss_pred CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHh-HcCCcccCCEEECCCCcCCccCHHHh--cCCC
Confidence 358888998876 4543221112345788888888884 56542111 22457888888888887764221111 1235
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 537 SLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 537 ~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
+|++|+|+++. ++.. .......+++|++|+|++|.
T Consensus 103 ~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 103 QLKTLNLYDNQ-ISCV-MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCCEEECCSSC-CCEE-CTTSSTTCTTCCEEECTTCC
T ss_pred CCCEEECCCCc-CCee-CHHHhhcCCCCCEEEeCCCC
Confidence 67777777643 2210 00112345667777776665
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.60 E-value=0.00023 Score=66.62 Aligned_cols=63 Identities=21% Similarity=0.118 Sum_probs=29.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
+++|++|+|+++ .++.... .....+++|+.|+++++ .++.... .....+++|+.|+|++|.+.
T Consensus 75 l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLPN-GVFDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEEECCCC-CccccCH-HHhhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCCCee
Confidence 456666666654 2332111 11123556666666663 4442111 11234566666666666544
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.44 E-value=0.00043 Score=80.01 Aligned_cols=110 Identities=20% Similarity=0.156 Sum_probs=71.6
Q ss_pred HhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHh
Q 041246 480 GKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAK 559 (637)
Q Consensus 480 ~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~ 559 (637)
...++.|+.|+|+++ .+.... ..+ ..+++|+.|+|++|.++. +..-+ ...++|+.|+|+++. ++ .+...+.
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~-~~~-~~l~~L~~L~Ls~N~l~~--lp~~~-~~l~~L~~L~Ls~N~-l~--~lp~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNIS-ANI-FKYDFLTRLYLNGNSLTE--LPAEI-KNLSNLRVLDLSHNR-LT--SLPAELG 290 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCC-GGG-GGCCSCSCCBCTTSCCSC--CCGGG-GGGTTCCEEECTTSC-CS--SCCSSGG
T ss_pred hccCCCCcEEECCCC-CCCCCC-hhh-cCCCCCCEEEeeCCcCcc--cChhh-hCCCCCCEEeCcCCc-CC--ccChhhc
Confidence 345788999999995 554211 112 268999999999998872 21111 223789999999865 33 1222235
Q ss_pred CCCCcceEeeecCCCCCHHHHHHHHhcCCCcCEEEeecCCCCC
Q 041246 560 CSRNLLSLDLSWCRFIKDEALGFIVDNCSLLRLLKLFGCSQIT 602 (637)
Q Consensus 560 ~~~~L~~L~Ls~c~~ltd~~l~~l~~~cp~L~~L~L~~C~~lt 602 (637)
.+++|++|+|++|. ++. +..-+..+++|+.|+|++|. ++
T Consensus 291 ~l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N~-l~ 329 (727)
T 4b8c_D 291 SCFQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGNP-LE 329 (727)
T ss_dssp GGTTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTSC-CC
T ss_pred CCCCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCCc-cC
Confidence 67899999999886 552 21124578899999999885 44
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.24 E-value=0.00029 Score=81.39 Aligned_cols=112 Identities=20% Similarity=0.037 Sum_probs=76.9
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcC
Q 041246 456 HCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSG 535 (637)
Q Consensus 456 ~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~ 535 (637)
.++.|+.|+|++|. +.... ..+. .+++|+.|+|+++ .++. +..-+..+++|+.|+|++|.++. +..-+ ...
T Consensus 222 ~l~~L~~L~Ls~n~-l~~l~-~~~~-~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~-~~l 292 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ-IFNIS-ANIF-KYDFLTRLYLNGN-SLTE--LPAEIKNLSNLRVLDLSHNRLTS--LPAEL-GSC 292 (727)
T ss_dssp CCCCCCEEECTTSC-CSCCC-GGGG-GCCSCSCCBCTTS-CCSC--CCGGGGGGTTCCEEECTTSCCSS--CCSSG-GGG
T ss_pred cCCCCcEEECCCCC-CCCCC-hhhc-CCCCCCEEEeeCC-cCcc--cChhhhCCCCCCEEeCcCCcCCc--cChhh-cCC
Confidence 47899999999874 44211 1222 5899999999995 6762 22223678999999999999873 21111 123
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCCCCCHHHH
Q 041246 536 DSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCRFIKDEAL 580 (637)
Q Consensus 536 ~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ltd~~l 580 (637)
++|++|+|+++. ++. +..-+..+++|+.|+|++|. ++....
T Consensus 293 ~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~p 333 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGNP-LEKQFL 333 (727)
T ss_dssp TTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTSC-CCSHHH
T ss_pred CCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCCc-cCCCCh
Confidence 799999999874 331 11224578999999999998 764433
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.81 E-value=0.0004 Score=74.44 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=44.4
Q ss_pred HhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCCCccchhcHHHHHhcCCCCcEEeccC-CcCCCHHHHHHHH
Q 041246 375 RSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHCQNIDAVSMLPALRKLNCLEVLSVAG-IETVDDYFVTEIV 453 (637)
Q Consensus 375 ~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c~~i~~~~l~~~l~~l~~L~~L~Ls~-~~~l~~~~l~~ll 453 (637)
..|++|+.+++..+ .++.-+-..+. + ++|+.+.|... +...+ ...+.+|++|+.+.+.. ...+....+.
T Consensus 177 ~~c~~L~~l~l~~n-~l~~I~~~aF~--~-~~L~~l~lp~~--l~~I~-~~aF~~~~~L~~l~l~~~l~~I~~~aF~--- 246 (401)
T 4fdw_A 177 YYCYNLKKADLSKT-KITKLPASTFV--Y-AGIEEVLLPVT--LKEIG-SQAFLKTSQLKTIEIPENVSTIGQEAFR--- 246 (401)
T ss_dssp TTCTTCCEEECTTS-CCSEECTTTTT--T-CCCSEEECCTT--CCEEC-TTTTTTCTTCCCEECCTTCCEECTTTTT---
T ss_pred hCcccCCeeecCCC-cceEechhhEe--e-cccCEEEeCCc--hheeh-hhHhhCCCCCCEEecCCCccCccccccc---
Confidence 44566666666543 22211111111 2 25666666532 11111 12344666666666643 2222222221
Q ss_pred HHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcC
Q 041246 454 RAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSH 493 (637)
Q Consensus 454 ~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~ 493 (637)
..+|+.+.|.. .++..+-.+ ...|++|+.+.+.+
T Consensus 247 ---~~~L~~i~lp~--~i~~I~~~a-F~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 247 ---ESGITTVKLPN--GVTNIASRA-FYYCPELAEVTTYG 280 (401)
T ss_dssp ---TCCCSEEEEET--TCCEECTTT-TTTCTTCCEEEEES
T ss_pred ---cCCccEEEeCC--CccEEChhH-hhCCCCCCEEEeCC
Confidence 24666666653 232211111 13466666666655
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.70 E-value=0.02 Score=57.50 Aligned_cols=13 Identities=38% Similarity=0.406 Sum_probs=6.0
Q ss_pred hCCCCCEEEecCC
Q 041246 376 SASALQSVNLSQC 388 (637)
Q Consensus 376 ~~~~L~~L~Ls~c 388 (637)
.+++|++|+|++|
T Consensus 168 ~l~~L~~L~Ls~N 180 (267)
T 3rw6_A 168 NIPELLSLNLSNN 180 (267)
T ss_dssp HCTTCCEEECTTS
T ss_pred hCCCCCEEECCCC
Confidence 3444444444443
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.67 E-value=0.012 Score=59.34 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=22.0
Q ss_pred hcCCCCCEEEEcCCCCCCH-HHHHHHHhcCCCCCEEEeccCCCCH
Q 041246 481 KKCSRLCALDLSHLDNLTD-ATVQYLADGCRSICSLKLCRNNFSD 524 (637)
Q Consensus 481 ~~c~~L~~L~L~~c~~itd-~~l~~L~~~~~~L~~L~Ls~~~ltd 524 (637)
..+++|+.|+|++ +.++. .++..+...+++|+.|+|++|.+++
T Consensus 167 ~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 167 ENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 3455666666665 34443 1222333456666666666666543
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=94.26 E-value=0.0053 Score=57.39 Aligned_cols=84 Identities=17% Similarity=0.056 Sum_probs=46.7
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCCC
Q 041246 484 SRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSRN 563 (637)
Q Consensus 484 ~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~~ 563 (637)
++|+.|+|+++ .++.... ..+..+++|+.|+|++|+++...-..+ ...++|+.|+|+++. ++.. .......+++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~L~~N~-l~~l-~~~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVF--DKLTQLTQLDLNDNH-LKSI-PRGAFDNLKS 106 (174)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSC-CCCC-CTTTTTTCTT
T ss_pred CCCcEEEeCCC-CccccCH-HHhcCCcCCCEEECCCCCCCccChhHh--CCcchhhEEECCCCc-ccee-CHHHhccccC
Confidence 67888888884 5553211 122457888888888887764211111 123677777777643 2210 0012334667
Q ss_pred cceEeeecCC
Q 041246 564 LLSLDLSWCR 573 (637)
Q Consensus 564 L~~L~Ls~c~ 573 (637)
|+.|+|++|+
T Consensus 107 L~~L~L~~N~ 116 (174)
T 2r9u_A 107 LTHIYLYNNP 116 (174)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 7777777765
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=94.05 E-value=0.0055 Score=56.95 Aligned_cols=85 Identities=19% Similarity=0.072 Sum_probs=49.2
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHHHhCCC
Q 041246 483 CSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGDSLTELSLNHVRGVGLNTALSLAKCSR 562 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~~L~~L~Ls~c~~l~~~~l~~l~~~~~ 562 (637)
.++|+.|+|+++ .++...-. .+..+++|+.|+|++|+++...-..+ ...++|++|+|+++. ++.. .......++
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~ 102 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPG-VFDRLTQLTRLDLDNNQLTVLPAGVF--DKLTQLTQLSLNDNQ-LKSI-PRGAFDNLK 102 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSC-CCCC-CTTTTTTCT
T ss_pred CCCCcEEEcCCC-cCCccChh-hhcCcccCCEEECCCCCcCccChhhc--cCCCCCCEEECCCCc-cCEe-CHHHhcCCC
Confidence 367888888884 56542211 22457888888888888763211111 123677777777653 2210 001234567
Q ss_pred CcceEeeecCC
Q 041246 563 NLLSLDLSWCR 573 (637)
Q Consensus 563 ~L~~L~Ls~c~ 573 (637)
+|++|+|++|+
T Consensus 103 ~L~~L~L~~N~ 113 (170)
T 3g39_A 103 SLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 77777777776
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.87 E-value=0.0031 Score=67.46 Aligned_cols=209 Identities=11% Similarity=0.181 Sum_probs=118.1
Q ss_pred CCCCccEEEecCC-CCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCC--CccchhcHHHH
Q 041246 350 SLPALTTISLTGA-YQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHC--QNIDAVSMLPA 426 (637)
Q Consensus 350 ~l~~L~~L~Ls~~-~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c--~~i~~~~l~~~ 426 (637)
++ +|+.+.|... ..|.+.. + ..| +|+.+.|.. .++.-+-..+ ..|. +|+.+++..+ ..+....+
T Consensus 134 ~~-~L~~i~l~~~i~~I~~~a---F-~~~-~L~~i~lp~--~l~~I~~~aF-~~c~-~L~~l~l~~n~l~~I~~~aF--- 200 (401)
T 4fdw_A 134 NS-QIAKVVLNEGLKSIGDMA---F-FNS-TVQEIVFPS--TLEQLKEDIF-YYCY-NLKKADLSKTKITKLPASTF--- 200 (401)
T ss_dssp TC-CCSEEECCTTCCEECTTT---T-TTC-CCCEEECCT--TCCEECSSTT-TTCT-TCCEEECTTSCCSEECTTTT---
T ss_pred cC-CccEEEeCCCccEECHHh---c-CCC-CceEEEeCC--CccEehHHHh-hCcc-cCCeeecCCCcceEechhhE---
Confidence 44 5777777653 1122222 2 223 689998875 2322111112 2354 8999999864 22332221
Q ss_pred HhcCCCCcEEeccCC-cCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHH
Q 041246 427 LRKLNCLEVLSVAGI-ETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYL 505 (637)
Q Consensus 427 l~~l~~L~~L~Ls~~-~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L 505 (637)
.+.+|+.+.+... ..+....+ ..|++|+.+.|.. .++..+-.++.. .+|+.+.|.. .++..+-. .
T Consensus 201 --~~~~L~~l~lp~~l~~I~~~aF-----~~~~~L~~l~l~~--~l~~I~~~aF~~--~~L~~i~lp~--~i~~I~~~-a 266 (401)
T 4fdw_A 201 --VYAGIEEVLLPVTLKEIGSQAF-----LKTSQLKTIEIPE--NVSTIGQEAFRE--SGITTVKLPN--GVTNIASR-A 266 (401)
T ss_dssp --TTCCCSEEECCTTCCEECTTTT-----TTCTTCCCEECCT--TCCEECTTTTTT--CCCSEEEEET--TCCEECTT-T
T ss_pred --eecccCEEEeCCchheehhhHh-----hCCCCCCEEecCC--CccCcccccccc--CCccEEEeCC--CccEEChh-H
Confidence 2578888888642 33333332 3478899999875 333222222222 5799999855 34322212 2
Q ss_pred HhcCCCCCEEEeccCCCC--------HHHHHHHHHhcCCCccEEEcCC-CCCCCHHHHHHHHhCCCCcceEeeecCCCCC
Q 041246 506 ADGCRSICSLKLCRNNFS--------DEALAAFLEVSGDSLTELSLNH-VRGVGLNTALSLAKCSRNLLSLDLSWCRFIK 576 (637)
Q Consensus 506 ~~~~~~L~~L~Ls~~~lt--------d~~l~~l~~~~~~~L~~L~Ls~-c~~l~~~~l~~l~~~~~~L~~L~Ls~c~~lt 576 (637)
+.+|++|+.+.+.++.+. +.++ ..|++|+.+.|.+ ...+... ....|++|+.|.|..+ ++
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF-----~~c~~L~~l~l~~~i~~I~~~----aF~~c~~L~~l~lp~~--l~ 335 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCL-----EGCPKLARFEIPESIRILGQG----LLGGNRKVTQLTIPAN--VT 335 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTT-----TTCTTCCEECCCTTCCEECTT----TTTTCCSCCEEEECTT--CC
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHh-----hCCccCCeEEeCCceEEEhhh----hhcCCCCccEEEECcc--cc
Confidence 357899999999876543 2222 3467899999874 2223322 2346889999999544 33
Q ss_pred HHHHHHHHhcCCCcCEEEeecC
Q 041246 577 DEALGFIVDNCSLLRLLKLFGC 598 (637)
Q Consensus 577 d~~l~~l~~~cp~L~~L~L~~C 598 (637)
.-+-. .+.+| +|+.|.+.++
T Consensus 336 ~I~~~-aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 336 QINFS-AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp EECTT-SSSSS-CCCEEEECCS
T ss_pred EEcHH-hCCCC-CCCEEEEcCC
Confidence 21111 23568 8999999876
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.64 E-value=0.0074 Score=56.03 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=20.3
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCC
Q 041246 483 CSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFS 523 (637)
Q Consensus 483 c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~lt 523 (637)
+++|+.|+|+++ .++.... ..+..+++|+.|+|++|.++
T Consensus 77 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 77 LTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCCCCC
Confidence 556666666663 4432111 11234566677777666654
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=93.43 E-value=0.0065 Score=56.76 Aligned_cols=62 Identities=26% Similarity=0.299 Sum_probs=25.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNF 522 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~l 522 (637)
+++|+.|+|+++ .++... ..+...+++|+.|+|++ +.++...- ..+..+++|+.|+|++|.+
T Consensus 56 l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~-N~l~~l~~-~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 56 LVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLND-NHLKSIPR-GAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCSEEECCSSCB
T ss_pred CcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCC-CccceeCH-HHhccccCCCEEEeCCCCc
Confidence 455556665554 233211 01112245555555555 23332110 1112344555555555543
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.12 E-value=0.0012 Score=70.15 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=6.5
Q ss_pred cCCCCCEEEEcC
Q 041246 482 KCSRLCALDLSH 493 (637)
Q Consensus 482 ~c~~L~~L~L~~ 493 (637)
.|..|+.+.+..
T Consensus 251 ~~~~l~~~~~~~ 262 (394)
T 4fs7_A 251 GCTDLESISIQN 262 (394)
T ss_dssp TCSSCCEEEECC
T ss_pred ccccceeEEcCC
Confidence 355566665543
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=90.79 E-value=0.021 Score=58.98 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=6.8
Q ss_pred CCEEEeccCCCC
Q 041246 512 ICSLKLCRNNFS 523 (637)
Q Consensus 512 L~~L~Ls~~~lt 523 (637)
|+.|+|.+|.+.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 566666655544
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=90.58 E-value=0.029 Score=58.01 Aligned_cols=85 Identities=20% Similarity=0.136 Sum_probs=45.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCCCHHHHHHHHHhcCC
Q 041246 457 CLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNFSDEALAAFLEVSGD 536 (637)
Q Consensus 457 ~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~ltd~~l~~l~~~~~~ 536 (637)
+++|++|+|++++.++...-.. ...+++|+.|+|+++ .++...- ..+..+++|+.|+|++|+++...-..+ ...
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~~ 103 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFNALESLSWKTV---QGL 103 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSSCCSCCCSTTT---CSC
T ss_pred CCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCCccceeCHHHc---ccC
Confidence 3456666665422343221111 224677788888773 5554221 123467888888888887753211111 112
Q ss_pred CccEEEcCCCC
Q 041246 537 SLTELSLNHVR 547 (637)
Q Consensus 537 ~L~~L~Ls~c~ 547 (637)
+|+.|+|.++.
T Consensus 104 ~L~~l~l~~N~ 114 (347)
T 2ifg_A 104 SLQELVLSGNP 114 (347)
T ss_dssp CCCEEECCSSC
T ss_pred CceEEEeeCCC
Confidence 37777777654
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=69.40 E-value=0.98 Score=47.35 Aligned_cols=83 Identities=11% Similarity=0.261 Sum_probs=37.8
Q ss_pred HhcCCCCcEEeccC-CcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcCCCCCCHHHHHHH
Q 041246 427 LRKLNCLEVLSVAG-IETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSHLDNLTDATVQYL 505 (637)
Q Consensus 427 l~~l~~L~~L~Ls~-~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~c~~itd~~l~~L 505 (637)
+.+++.|+.+.+.. ...+.+..+ ..|.+|+.+.|.. .++..+-.+ ...|.+|+.+.|.. .++..+-.+
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~~aF-----~~c~~L~~i~lp~--~v~~I~~~a-F~~C~~L~~i~ip~--sv~~I~~~a- 352 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPESVF-----AGCISLKSIDIPE--GITQILDDA-FAGCEQLERIAIPS--SVTKIPESA- 352 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTT-----TTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEEECT--TCCBCCGGG-
T ss_pred cccccccccccCCCcccccCceee-----cCCCCcCEEEeCC--cccEehHhH-hhCCCCCCEEEECc--ccCEEhHhH-
Confidence 34556666666543 122323222 2256666666653 222111111 12466677766643 122211111
Q ss_pred HhcCCCCCEEEeccC
Q 041246 506 ADGCRSICSLKLCRN 520 (637)
Q Consensus 506 ~~~~~~L~~L~Ls~~ 520 (637)
+.+|.+|+.+++.++
T Consensus 353 F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 353 FSNCTALNNIEYSGS 367 (394)
T ss_dssp GTTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECCc
Confidence 245667777766654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=52.36 E-value=2.6 Score=44.01 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=56.6
Q ss_pred ccCCCCccEEEecCCC-CCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHHHHhhcccceEEeccCC-CccchhcHHH
Q 041246 348 NFSLPALTTISLTGAY-QLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLLVKHLKSTLRVLYIDHC-QNIDAVSMLP 425 (637)
Q Consensus 348 ~~~l~~L~~L~Ls~~~-~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L~~~~~~~L~~L~Ls~c-~~i~~~~l~~ 425 (637)
+..|..|+.+.+.... .+... .+..|+.|+.+.+.. .++.-+-..+ ..|. +|+.+.|... ..+.. .
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~--~i~~I~~~aF-~~c~-~L~~i~lp~~v~~I~~----~ 328 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSS--RITELPESVF-AGCI-SLKSIDIPEGITQILD----D 328 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTT-TTCT-TCCEEECCTTCCEECT----T
T ss_pred eeecccccEEecccccceecCc----ccccccccccccCCC--cccccCceee-cCCC-CcCEEEeCCcccEehH----h
Confidence 3456666666664321 11111 123456666666653 2221111111 2243 6777776542 22222 2
Q ss_pred HHhcCCCCcEEeccC-CcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcC
Q 041246 426 ALRKLNCLEVLSVAG-IETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSH 493 (637)
Q Consensus 426 ~l~~l~~L~~L~Ls~-~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~ 493 (637)
.+.+|.+|+.+.+.. ...+....+ ..|.+|+.+.+.+.. ..+.++ ..|..|+.|.+..
T Consensus 329 aF~~C~~L~~i~ip~sv~~I~~~aF-----~~C~~L~~i~~~~~~----~~~~~~-~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSSVTKIPESAF-----SNCTALNNIEYSGSR----SQWNAI-STDSGLQNLPVAP 387 (394)
T ss_dssp TTTTCTTCCEEEECTTCCBCCGGGG-----TTCTTCCEEEESSCH----HHHHTC-BCCCCC-------
T ss_pred HhhCCCCCCEEEECcccCEEhHhHh-----hCCCCCCEEEECCce----eehhhh-hccCCCCEEEeCC
Confidence 345777888887743 344444433 247788888887631 122222 3466777776654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=39.15 E-value=2.8 Score=43.35 Aligned_cols=59 Identities=17% Similarity=0.328 Sum_probs=30.1
Q ss_pred HhcCCCCcEEeccC--CcCCCHHHHHHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEEcC
Q 041246 427 LRKLNCLEVLSVAG--IETVDDYFVTEIVRAHCLNMRQLVLANCGQLTDRALKFVGKKCSRLCALDLSH 493 (637)
Q Consensus 427 l~~l~~L~~L~Ls~--~~~l~~~~l~~ll~~~~~~L~~L~Ls~c~~ltd~~l~~l~~~c~~L~~L~L~~ 493 (637)
+..|.+|+.+.+.+ ...+.+..+ ..|.+|+.+.|.. .++..+-.++ ..|.+|+.+.|..
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF-----~~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVF-----MDCVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTT-----TTCTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCCCT
T ss_pred cccccccccccccccccceehhhhh-----cCCCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEECC
Confidence 34666677776643 233333332 2366777777753 2322111122 3477777777643
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=36.74 E-value=3.2 Score=42.90 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCCccEEEcCC--CCCCCHHHHHHHHhCCCCcceEeeecC-CCCCHHHHHHHHhcCCCcCEEEee
Q 041246 535 GDSLTELSLNH--VRGVGLNTALSLAKCSRNLLSLDLSWC-RFIKDEALGFIVDNCSLLRLLKLF 596 (637)
Q Consensus 535 ~~~L~~L~Ls~--c~~l~~~~l~~l~~~~~~L~~L~Ls~c-~~ltd~~l~~l~~~cp~L~~L~L~ 596 (637)
|.+|+.+.+.+ ...+.+. ....|.+|+.+.|... ..|.+. .+.+|.+|+.+.|-
T Consensus 285 c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ip 341 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred ccccccccccccccceehhh----hhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEEEC
Confidence 45666666643 2223221 2235667777776432 222221 13467777777764
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=29.46 E-value=8.5 Score=40.00 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=56.3
Q ss_pred CCeeEEEeecCCCCCChHHHHHHHHHhccCCCCccEEEecCC-CCCCHHHHHHHHHhCCCCCEEEecCCCCCChhHHHHH
Q 041246 321 KNLIVLQLDLCGRILTENVIINTIVTQNFSLPALTTISLTGA-YQLTDFGLSKLARSASALQSVNLSQCSLLTNEGINLL 399 (637)
Q Consensus 321 ~nL~~L~Ls~~~~~l~d~~l~~il~~~~~~l~~L~~L~Ls~~-~~isd~~l~~L~~~~~~L~~L~Ls~c~~ls~~~l~~L 399 (637)
.+++.+.+.... +.+. .+..|.+|+.+.+... ..|.+.. +..|.+|+.++|... ++.-+-.++
T Consensus 276 ~~l~~~~~~~~~--i~~~--------~F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF 339 (394)
T 4fs7_A 276 SGLKKVIYGSVI--VPEK--------TFYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYL--VEEIGKRSF 339 (394)
T ss_dssp TTCCEEEECSSE--ECTT--------TTTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTTT
T ss_pred cccceeccCcee--eccc--------cccccccccccccccccceechhh----hcCCCCCCEEEeCCc--ccEEhHHhc
Confidence 677777665422 2221 3457888888888653 1222221 356788888888642 322221122
Q ss_pred HHhhcccceEEeccCC-CccchhcHHHHHhcCCCCcEEeccC
Q 041246 400 VKHLKSTLRVLYIDHC-QNIDAVSMLPALRKLNCLEVLSVAG 440 (637)
Q Consensus 400 ~~~~~~~L~~L~Ls~c-~~i~~~~l~~~l~~l~~L~~L~Ls~ 440 (637)
..|. +|+.+.+... ..+.. ..+.+|.+|+.+.+..
T Consensus 340 -~~c~-~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 340 -RGCT-SLSNINFPLSLRKIGA----NAFQGCINLKKVELPK 375 (394)
T ss_dssp -TTCT-TCCEECCCTTCCEECT----TTBTTCTTCCEEEEEG
T ss_pred -cCCC-CCCEEEECccccEehH----HHhhCCCCCCEEEECC
Confidence 2354 7888888653 22322 3456888999998865
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=25.40 E-value=15 Score=31.84 Aligned_cols=36 Identities=19% Similarity=0.025 Sum_probs=18.2
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhCCCCcceEeeecCC
Q 041246 536 DSLTELSLNHVRGVGLNTALSLAKCSRNLLSLDLSWCR 573 (637)
Q Consensus 536 ~~L~~L~Ls~c~~l~~~~l~~l~~~~~~L~~L~Ls~c~ 573 (637)
++|++|+|+++. |+... ..+...+++|+.|+|++|+
T Consensus 31 ~~l~~L~Ls~N~-l~~l~-~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNN-LTALP-PGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSC-CSSCC-TTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCc-CCccC-hhhhhhccccCEEEecCCC
Confidence 467777777543 21100 0122345666677766665
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=23.65 E-value=23 Score=30.69 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=19.0
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHhcCCCCCEEEeccCCC
Q 041246 485 RLCALDLSHLDNLTDATVQYLADGCRSICSLKLCRNNF 522 (637)
Q Consensus 485 ~L~~L~L~~c~~itd~~l~~L~~~~~~L~~L~Ls~~~l 522 (637)
+|+.|+|++ +.|+...-. .+..+++|+.|+|.+|.+
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~-~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPG-LLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTT-SCCSSCCTT-TGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCC-CcCCccChh-hhhhccccCEEEecCCCe
Confidence 466666666 344432211 224466677777776654
Done!