BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041247
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 14 NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
NG K+ + LL NG + DS R L+ AA NG + K + K ++ G
Sbjct: 14 NGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD--GR 71
Query: 74 TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
T LH AA+ + VK LL + D K+ G T YAA +G EIV+ ++ D
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGA--DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD- 128
Query: 134 AMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
D DG P+ A ++V LL KQ
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 8 LGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE 67
L + NG KE ++LLS G ++DS R L+ AA NG + K + K ++
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Query: 68 ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM 127
G T LH AA+ + VK LL + D + G T A G EIV+ +
Sbjct: 101 SD--GRTPLHYAAENGHKEIVKLLLSKGA--DPNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Query: 128 K 128
K
Sbjct: 157 K 157
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 5/150 (3%)
Query: 14 NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
NG K+ + L+ NG + DS R L+ AA NG V K + K ++ + ++ G
Sbjct: 14 NGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSD-GR 71
Query: 74 TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
T LH AA+ + VK L+ + D+ K+ G T +AA +G E+V+ ++ D+
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGA--DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 134 AMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
D DG P+ A ++V LL KQ
Sbjct: 130 -NTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 5/150 (3%)
Query: 14 NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
NG K+ + L+ NG + DS R L+ AA G + K + K ++ + ++ G
Sbjct: 14 NGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSD-GR 71
Query: 74 TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
T LH AA+ + VK L+ + D+ K+ G T YAA G EIV+ ++ D+
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGA--DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 134 AMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
D DG P+ A ++V LL KQ
Sbjct: 130 -NTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D R L+ AA G + + + + ++ TN G T
Sbjct: 13 GQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVE-VLLRNGADVNAVDTN-GTT 70
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
LH+AA ++ V+ LLK + D+ K+ G T + AA G +EIVE ++K D+
Sbjct: 71 PLHLAASLGHLEIVEVLLKYGA--DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 79 AAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD 138
AA+A D V+ L M + D + G T AAA G +EIVE +++ D+ V D
Sbjct: 9 AARAGQDDEVRIL--MANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV-D 65
Query: 139 MDGTLPIVRAAALEQGQMVLLLHK 162
+GT P+ AA+L ++V +L K
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLK 89
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D L L+ AA G + + + KY ++ N G T
Sbjct: 25 GQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVE-VLLKYGADV-NAWDNYGAT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
LH+AA ++ V+ LLK + D+ K+ G T AA G +EIVE ++K D+
Sbjct: 83 PLHLAADNGHLEIVEVLLKHGA--DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 71 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
LG+T LH+AA+ ++ V+ LLK + D+ + G T AA +G +EIVE ++K
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKYGA--DVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
Query: 131 KDIAMVPDMDGTLPIVRAA 149
D+ D +G P+ AA
Sbjct: 104 ADV-NAKDYEGFTPLHLAA 121
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH+AA+ ++ V+ LLK + D+ K+K G T AA G +EIVE ++K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 132 DIAMVPDMDGTLPIVRAA 149
D+ D DG P+ AA
Sbjct: 93 DV-NAKDKDGYTPLHLAA 109
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 21 RVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA 80
R+L++NG ++D L+ AA G + ++ K ++ + + G T LH+AA
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKD-GYTPLHLAA 76
Query: 81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
+ ++ V+ LLK + D+ K+K G T AA G +EIVE ++K D+
Sbjct: 77 REGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 79 AAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD 138
AA+A D V+ L M + D+ K+K G T AA G +EIVE ++K D+ D
Sbjct: 9 AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKD 65
Query: 139 MDGTLPIVRAA 149
DG P+ AA
Sbjct: 66 KDGYTPLHLAA 76
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG +ED + L+ AA+ G + + + K+ ++ +G+T
Sbjct: 25 GQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVE-VLLKHGADV-NAADKMGDT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
LH+AA ++ V+ LLK + D+ + G T AA +G +EIVE ++K D+
Sbjct: 83 PLHLAALYGHLEIVEVLLK--NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH+AA ++ V+ LLK + D+ +K+G T AA G +EIVE ++K
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGA--DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 132 DIAMVPDMDGTLPIVRAA 149
D+ D G P+ AA
Sbjct: 105 DV-NATDTYGFTPLHLAA 121
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 18 EAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALH 77
E VLL +G + D + L+ AAL G + + + K ++ T G T LH
Sbjct: 61 EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVE-VLLKNGADVNATDT-YGFTPLH 118
Query: 78 VAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
+AA A ++ V+ LLK + D+ ++K G TAF + +G ++ E + K N
Sbjct: 119 LAADAGHLEIVEVLLKYGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH+AA+ ++ V+ LLK + D+ K+K G T AA G +EIVE ++K
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 132 DIAMVPDMDGTLPIVRAA 149
D+ D DG P+ AA
Sbjct: 105 DV-NAKDKDGYTPLHLAA 121
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG ++D L+ AA G + + + K ++ + + G T
Sbjct: 25 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKD-GYT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
LH+AA+ ++ V+ LLK + D+ K+K G T AA G +EIVE ++K D+
Sbjct: 83 PLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
++LG L AA+A D V+ L M + D+ K+K G T AA G +EIVE ++K
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 68
Query: 129 GNKDIAMVPDMDGTLPIVRAA 149
D+ D DG P+ AA
Sbjct: 69 AGADV-NAKDKDGYTPLHLAA 88
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH+AA+ ++ V+ LLK + D+ K+K G T AA G +EIVE ++K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 132 DIAMVPDMDGTLPIVRAA 149
D+ D DG P+ AA
Sbjct: 93 DV-NAKDKDGYTPLHLAA 109
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 21 RVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA 80
R+L++NG ++D L+ AA G + + + K ++ + + G T LH+AA
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKD-GYTPLHLAA 76
Query: 81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
+ ++ V+ LLK + D+ K+K G T AA G +EIVE ++K D+
Sbjct: 77 REGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 79 AAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD 138
AA+A D V+ L M + D+ K+K G T AA G +EIVE ++K D+ D
Sbjct: 9 AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKD 65
Query: 139 MDGTLPIVRAA 149
DG P+ AA
Sbjct: 66 KDGYTPLHLAA 76
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 14 NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
NG K+ + LL NG + DS + L+ AA NG V K + + ++ G
Sbjct: 14 NGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD--GK 71
Query: 74 TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
T LH+AA+ + VK LL + D K+ G T AA +G E+V+ ++ D
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGA--DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD- 128
Query: 134 AMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
D DG P+ A ++V LL KQ
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 70 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
N G T LH+AA ++ V+ LLK + D+ + G T AAA+G +EIVE ++K
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLK--NGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 130 NKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
D+ D DG P+ AA ++V +L K
Sbjct: 103 GADVNAY-DNDGHTPLHLAAKYGHLEIVEVLLKH 135
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 8 LGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE 67
L +NG E VLL NG + D L+ AA G + + + K+ ++
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVE-VLLKHGADV-NA 108
Query: 68 ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
N G+T LH+AA+ ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 109 YDNDGHTPLHLAAKYGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAE 163
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 70 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
N G T LH+AA + ++ V+ LLK + D+ + G T AA G +EIVE ++K
Sbjct: 45 NTGTTPLHLAAYSGHLEIVEVLLKHGA--DVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 130 NKDIAMVPDMDGTLPIVRAA 149
D+ + D DG P+ AA
Sbjct: 103 GADVNAM-DSDGMTPLHLAA 121
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
G T LH+AA+ ++ V+ LLK + D+ ++K G TAF + +G ++ E + K N
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 14 NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEIT---N 70
NG E ++LL G ++D R L+ AA NG V K + +E G ++
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL-----LEAGADVNAKDK 66
Query: 71 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
G T LH+AA+ ++ VK LL+ + D+ K+K G T AA +G +E+V+ +++
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH+AA+ ++ VK LL+ + D+ K+K G T AA +G +E+V+ +++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMVLLL 160
D+ D +G P+ AA ++V LL
Sbjct: 60 DVN-AKDKNGRTPLHLAARNGHLEVVKLL 87
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 68 ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM 127
+ N G T LH+AA + ++ V+ LLK + D A + G T AA +G +EIVE ++
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA--DVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 128 KGNKDIAMVPDMDGTLPIVRAAALEQGQM 156
K D+ DM G+ P+ AA ++G +
Sbjct: 101 KYGADVNAF-DMTGSTPLHLAA--DEGHL 126
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 1 MDNI-LSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDK 59
+DN L+ L +G E VLL +G + D L+ AA+ G + + + K
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVE-VLLK 101
Query: 60 YKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF 111
Y ++ G+T LH+AA ++ V+ LLK + D+ ++K G TAF
Sbjct: 102 YGADV-NAFDMTGSTPLHLAADEGHLEIVEVLLKYGA--DVNAQDKFGKTAF 150
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D L+ AA NG + ++ K ++ + G T
Sbjct: 17 GQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNAS-DSAGIT 74
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
LH+AA ++ V+ LLK + D+ ++ G T AA SG +EIVE ++K D+
Sbjct: 75 PLHLAAYDGHLEIVEVLLKHGA--DVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYK 61
DN L+ L NG E VLL NG + DS L+ AA +G + ++ K+
Sbjct: 37 DNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIV-EVLLKHG 95
Query: 62 VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVE 121
++ G T LH+AA + ++ V+ LLK + D+ ++ +G TAF + G +
Sbjct: 96 ADV-NAYDRAGWTPLHLAALSGQLEIVEVLLKHGA--DVNAQDALGLTAFDISINQGQED 152
Query: 122 IVE 124
+ E
Sbjct: 153 LAE 155
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 70 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
+LG L AA A D V+ L M + D+ + G T AAA+G +EIVE ++K
Sbjct: 5 DLGKKLLEAAA-AGQDDEVRIL--MANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN 61
Query: 130 NKDIAMVPDMDGTLPIVRAA 149
D+ D G P+ AA
Sbjct: 62 GADVN-ASDSAGITPLHLAA 80
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D + L+ AA G + + + K ++ T LG+T
Sbjct: 25 GRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVE-VLLKNGADVNAYDT-LGST 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
LH+AA ++ V+ LLK + D+ K+ G T AA G +EIVE ++K D+
Sbjct: 83 PLHLAAHFGHLEIVEVLLK--NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G E VLL NG + D+L L+ AA G + + + K ++ + N G T
Sbjct: 58 GHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVE-VLLKNGADVNAKDDN-GIT 115
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E + K N
Sbjct: 116 PLHLAANRGHLEIVEVLLKYGA--DVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH+AA+ ++ VK LL+ + D+ K+K G T AA +G +E+V+ +++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMVLLL 160
D+ D +G P+ AA ++V LL
Sbjct: 60 DVN-AKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 38 RLKLYRAALNGDWAVAKDIYDKYKVEIGQEIT---NLGNTALHVAAQANCIDFVKELLKM 94
R L+ AA NG V K + +E G ++ G T LH+AA+ ++ VK LL+
Sbjct: 3 RTPLHLAARNGHLEVVKLL-----LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE- 56
Query: 95 MSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
+ D+ K+K G T AA +G +E+V+ +++
Sbjct: 57 -AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 14 NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEIT---N 70
NG E ++LL G ++D R L+ AA NG V K + +E G ++
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL-----LEAGADVNAKDK 66
Query: 71 LGNTALHVAAQANCIDFVKELLK 93
G T LH+AA+ ++ VK LL+
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLE 89
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 60 YKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGM 119
Y+V+ E+ GNT L++A N I+ K L+ + D+ +N I + + YA A G
Sbjct: 30 YQVD---EVDTEGNTPLNIAVHNNDIEIAKALIDRGA--DINLQNSISDSPYLYAGAQGR 84
Query: 120 VEIVEEMMK 128
EI+ M+K
Sbjct: 85 TEILAYMLK 93
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D+ L+ AA G + + + K+ ++ I +G+T
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVE-VLLKHGADV-NAIDIMGST 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
LH+AA ++ V+ LLK + D+ + G T AA G +EIVE ++K D+
Sbjct: 83 PLHLAALIGHLEIVEVLLKHGA--DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 5 LSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEI 64
L+ L T G E VLL +G + D + L+ AAL G + + + K+ ++
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVE-VLLKHGADV 106
Query: 65 GQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
+ G+T LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 107 -NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 125 EMMKGN 130
+ K N
Sbjct: 164 ILQKLN 169
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
GNT LH+AA + ++ V+ LLK + D+ + G T AA G +EIVE ++K
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGA--DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
Query: 132 DI 133
D+
Sbjct: 105 DV 106
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D L+ AA + D ++ K+ ++ N G+T
Sbjct: 25 GQDDEVRILMANGADVNANDRKGNTPLHLAA-DYDHLEIVEVLLKHGADVNAH-DNDGST 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E + K N
Sbjct: 83 PLHLAALFGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D + L+ AA G + + + K ++ + +LG T
Sbjct: 25 GQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVE-VLLKNGADVNAD-DSLGVT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
LH+AA ++ V+ LLK + D+ + G T AA G +EIVE ++K D+
Sbjct: 83 PLHLAADRGHLEVVEVLLK--NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 8 LGWVMTN-----GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKV 62
+GW + G E VLL NG ++DSL L+ AA G V + + K
Sbjct: 46 VGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVE-VLLKNGA 104
Query: 63 EIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEI 122
++ N G T LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++
Sbjct: 105 DVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDL 161
Query: 123 VEEMMK 128
E + K
Sbjct: 162 AEILQK 167
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG +ED+ L+ AA NG + + + K ++ + + G T
Sbjct: 25 GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE-VLLKNGADV-NAVDHAGMT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
L +AA ++ V+ LLK + D+ + G T AA G +EIVE ++K D+
Sbjct: 83 PLRLAALFGHLEIVEVLLK--NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 14 NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
NG E VLL NG + D L AAL G + + + K ++ G+
Sbjct: 57 NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVE-VLLKNGADVNANDME-GH 114
Query: 74 TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
T LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E + K N
Sbjct: 115 TPLHLAAMFGHLEIVEVLLK--NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D+ L+ AA G + + + K+ ++ I G+T
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVE-VLLKHGADV-NAIDIXGST 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
LH+AA ++ V+ LLK + D+ + G T AA G +EIVE ++K D+
Sbjct: 83 PLHLAALIGHLEIVEVLLKHGA--DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Query: 5 LSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEI 64
L+ L T G E VLL +G + D L+ AAL G + + + K+ ++
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVE-VLLKHGADV 106
Query: 65 GQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
+ G+T LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 107 -NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 125 EMMKGN 130
+ K N
Sbjct: 164 ILQKLN 169
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH+AAQ ++ V+ LLK + D+ ++ G T AA G +EIVE ++K
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGA--DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 132 DI 133
D+
Sbjct: 105 DV 106
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 15 GIKEAPRVLLSNGG--ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG 72
G + R+L++NG L ED L L L AA G + + + KY ++ E N G
Sbjct: 25 GQDDEVRILMANGADVNALDEDGLTPLHL--AAQLGHLEIVE-VLLKYGADVNAE-DNFG 80
Query: 73 NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
T LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E + K N
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D L+ AA G + ++ K ++ + +LG T
Sbjct: 25 GQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIV-EVLLKNGADVNAK-DSLGVT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
LH+AA+ ++ V+ LLK + D+ + G T AA G +EIVE ++K D+
Sbjct: 83 PLHLAARRGHLEIVEVLLK--NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 9 GWVMTN-----GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVE 63
GW + G E VLL NG ++DSL L+ AA G + ++ K +
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIV-EVLLKNGAD 105
Query: 64 IGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIV 123
+ ++ G T LH+AA+ ++ V+ LLK + D+ ++K G TAF + +G ++
Sbjct: 106 VNASDSH-GFTPLHLAAKRGHLEIVEVLLK--NGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 124 EEMMKGN 130
E + K N
Sbjct: 163 EILQKLN 169
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G+T LH+AA+ ++ V+ LLK + D+ + G T AA G +EIVE ++K
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLK--NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162
D+ D G+ P+ AA ++V +L K
Sbjct: 105 DV-NADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G E VLL NG + D L+ AA G + + + KY ++ + T +G+T
Sbjct: 58 GHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVE-VLLKYGADVNADDT-IGST 115
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 116 PLHLAADTGHLEIVEVLLKYGA--DVNAQDKFGKTAFDISIDNGNEDLAE 163
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G+T LH+AA + V+ LLK + D+ ++ G T AA +G +EIVE ++K
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGA--DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
Query: 132 DIAMVPDMDGTLPIVRAAALEQGQM----VLLLHKQTKNS 167
D+ D G P+ AA ++G + VLL H N+
Sbjct: 105 DV-NAQDAYGLTPLHLAA--DRGHLEIVEVLLKHGADVNA 141
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 10 WVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEIT 69
W+ G E VLL +G + D+ L+ AA NG + + + KY ++ +
Sbjct: 56 WI---GHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVE-VLLKYGADVNAQDA 111
Query: 70 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
G T LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E + K
Sbjct: 112 -YGLTPLHLAADRGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Query: 130 N 130
N
Sbjct: 169 N 169
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG +ED + L+ AA+N + + + K ++ I +G T
Sbjct: 25 GQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVE-VLLKNGADV-NAIDAIGET 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
LH+ A ++ V+ LLK + D+ ++K G TAF + +G ++ E + K N
Sbjct: 83 PLHLVAMYGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
++LG L AA+A D V+ L M + D+ ++K+G T AA + +EIVE ++K
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRIL--MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK 68
Query: 129 GNKDIAMVPDMDGTLPI 145
D+ + D G P+
Sbjct: 69 NGADVNAI-DAIGETPL 84
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L +NG + D L+ AA+ G + + + K ++ N G T
Sbjct: 25 GQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVE-VLLKNGADV-NATGNTGRT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
LH+AA A+ ++ V+ LLK + D+ ++K G TAF + +G ++ E + K
Sbjct: 83 PLHLAAWADHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G + LH+AA A + VK LL + + +N GCT YAA+ EI +++G
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMV--LLLHKQTKN 166
+ D T + RAAA +MV LL +K + N
Sbjct: 131 NPDAKDHYDAT-AMHRAAAKGNLKMVHILLFYKASTN 166
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 74 TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
T L AA+ N ++ VK L+K + D K+ G T AA G E+V+ ++ +
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVD--PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103
Query: 134 AMVPDMDGTLPIVRAAALEQGQMV-LLLHKQTKNSLTDDD------------CIELLVQL 180
D G P++ A + +V LLL K + ++ D++ C+++ L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 181 IETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAE 240
+ + A+ + D P R EN + + +D T +N+ G +C +L ++
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAAR-ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G + LH+AA A + VK LL + + N+ GCT YAA+ EI +++G
Sbjct: 73 GWSPLHIAASAGRDEIVKALL--VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMV--LLLHKQTKN 166
+ D T + RAAA +MV LL +K + N
Sbjct: 131 NPDAKDHYDAT-AMHRAAAKGNLKMVHILLFYKASTN 166
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
GNT LH AA+ + VK+LL D+ ++K G T AA +G EIV+ ++
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 132 DIAMVPDMDGTLP 144
D+ DG P
Sbjct: 67 DVN-ARSKDGNTP 78
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 41 LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
L+ AA NG K + K G ++ + GNT LH+AA+ + VK LL
Sbjct: 13 LHNAAKNGHAEEVKKLLSK-----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLA--KG 65
Query: 98 EDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
D+ ++K G T A +G EIV+ + D+
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAK----KNKIGCTAFFYAAASGMVEIVEEMM 127
GNT LH+A + C+ V L + +T L N G T A+ G + IVE ++
Sbjct: 75 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134
Query: 128 KGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162
D+ +G + A L+ +V LL K
Sbjct: 135 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 44 AALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELL-KMMSTEDLAK 102
A ++ D A KD +KYK G TALH AAQ + VK L+ + S +D K
Sbjct: 262 AKVDYDGAARKDS-EKYK----------GRTALHYAAQVSNXPIVKYLVGEKGSNKD--K 308
Query: 103 KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGT 142
+++ G T AA G +E+V +++ + V D T
Sbjct: 309 QDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHT 348
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAK----KNKIGCTAFFYAAASGMVEIVEEMM 127
GNT LH+A + C+ V L + +T L N G T A+ G + IVE ++
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 128 KGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162
D+ +G + A L+ +V LL K
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI-TNLGN 73
G + R+L++NG A + D L L+ AA G ++ + + + + ++ T +
Sbjct: 13 GQDDEVRILMANG-APFTTDWLGTSPLHLAAQYGHFSTTEVLL---RAGVSRDARTKVDR 68
Query: 74 TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
T LH+AA + V+ LLK + D+ K+ + TA +A E+VE ++K D+
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGA--DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G TALH+AA+ + D K LL+ ++ D ++ +G T +AA S + V +++ N+
Sbjct: 22 GETALHLAARYSRSDAAKRLLE--ASADAXIQDNMGRTP-LHAAVSADAQGVFQILLRNR 78
Query: 132 DIAMVPDM-DGTLPIVRAAALE-QGQMVLLLHKQTKNSLTDD 171
+ M DGT P++ AA L +G + L++ + DD
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD 120
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 70 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
N+G T LH A A+ + LL+ +T DL + G T AA + ++E+++
Sbjct: 53 NMGRTPLHAAVSADAQGVFQILLRNRAT-DLDARMHDGTTPLILAARLALEGMLEDLINS 111
Query: 130 NKDIAMVPDM 139
+ D+ V D+
Sbjct: 112 HADVNAVDDL 121
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G++ LHVAA D + LLK + + +N A G ++V+ ++ N
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGA--NAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMVLLL--HKQTKNSLTDDDCIELLVQLIETGFYVVA 189
D+ G P++ A + ++V LL H + N+ + L +IE +VV
Sbjct: 144 K-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVE 202
Query: 190 L--------QLLRDRPRLATKRAENEETALHVL 214
L Q+L R R A AE + +L
Sbjct: 203 LLLLHGASVQVLNKRQRTAVDCAEQNSKIMELL 235
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G TALH+AA+ + D K LL+ ++ D ++ +G T +AA S + V +++ N+
Sbjct: 25 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTP-LHAAVSADAQGVFQILIRNR 81
Query: 132 DIAMVPDM-DGTLPIVRAAALE-QGQMVLLLHKQTKNSLTDD 171
+ M DGT P++ AA L +G + L++ + DD
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 123
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 70 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
N+G T LH A A+ + L++ +T DL + G T AA + ++E+++
Sbjct: 56 NMGRTPLHAAVSADAQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINS 114
Query: 130 NKDIAMVPDM 139
+ D+ V D+
Sbjct: 115 HADVNAVDDL 124
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G + LH+AA A + VK LL + + +N GCT YAA+ EI +++G
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGA 131
Query: 132 DIAMVPDMDGTLPIVRAAALEQGQM--VLLLHKQTKN 166
+ + T + RAAA +M +LL +K + N
Sbjct: 132 NPDAKDHYEAT-AMHRAAAKGNLKMIHILLYYKASTN 167
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G + LH+AA A + VK LL + + +N GCT YAA+ EI +++G
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 132 DIAMVPDMDGTLPIVRAAALEQGQM--VLLLHKQTKN 166
+ + T + RAAA +M +LL +K + N
Sbjct: 131 NPDAKDHYEAT-AMHRAAAKGNLKMIHILLYYKASTN 166
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G TALH+AA+ + D K LL+ ++ D ++ +G T +AA S + V +++ N+
Sbjct: 58 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTP-LHAAVSADAQGVFQILIRNR 114
Query: 132 DIAMVPDM-DGTLPIVRAAALE-QGQMVLLLHKQTKNSLTDD 171
+ M DGT P++ AA L +G + L++ + DD
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 156
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 70 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
N+G T LH A A+ + L++ +T DL + G T AA + ++E+++
Sbjct: 89 NMGRTPLHAAVSADAQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINS 147
Query: 130 NKDIAMVPDM 139
+ D+ V D+
Sbjct: 148 HADVNAVDDL 157
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G TALH+AA+ + D K LL+ ++ D ++ +G T +AA S + V +++ N+
Sbjct: 57 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTP-LHAAVSADAQGVFQILIRNR 113
Query: 132 DIAMVPDM-DGTLPIVRAAALE-QGQMVLLLHKQTKNSLTDD 171
+ M DGT P++ AA L +G + L++ + DD
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 155
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 70 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
N+G T LH A A+ + L++ +T DL + G T AA + ++E+++
Sbjct: 88 NMGRTPLHAAVSADAQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 130 NKDIAMVPDM 139
+ D+ V D+
Sbjct: 147 HADVNAVDDL 156
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 89 KELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA 148
K+L +S++D K + G +A +YA A V +V ++ A+ ++ P+ +A
Sbjct: 13 KQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG---ALKNLLENEFPLHQA 69
Query: 149 AALEQGQMV-LLLHKQTKNSLTDDDCIELLVQLIETG 184
A LE ++V +LL +S DD L +++G
Sbjct: 70 ATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG 106
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH+AA+ ++ V+ LLK + D+ + G T AA G +EIVE +++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGA--DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 132 DI 133
D+
Sbjct: 105 DV 106
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D L+ AA G + + + K+ ++ + G T
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE-VLLKHGADVNAS-DSWGRT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
LH+AA ++ V+ LL+ + D+ ++K G TAF + +G ++ E + K N
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH+AA+ ++ V+ LLK + D+ ++ G T AA G +EIVE +++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGA--DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 132 DI 133
D+
Sbjct: 105 DV 106
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D L+ AA G + + + K+ ++ G T
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE-VLLKHGADVNARDI-WGRT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
LH+AA ++ V+ LL+ + D+ ++K G TAF + +G ++ E + K N
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 21 RVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA 80
++LL GG+ S L+ AA VA+ + +Y E G T LH+AA
Sbjct: 196 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQ-GVTPLHLAA 253
Query: 81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
Q + V LL + +L NK G T A G V + + ++K
Sbjct: 254 QEGHAEMVALLLSKQANGNLG--NKSGLTPLHLVAQEGHVPVADVLIK 299
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
T G+T LH+AA+ ++ V LL+ +++ A K G T AA G V + E +++
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQ--ACMTKKGFTPLHVAAKYGKVRVAELLLE 167
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 11 VMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITN 70
V+ NG E VLL + D L+ AA G + + + KY ++ +
Sbjct: 54 VVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVE-VLLKYGADV-NAMDY 111
Query: 71 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
G T LH+AA+ ++ V+ LLK + D+ ++K G TAF + +G ++ E + K N
Sbjct: 112 QGYTPLHLAAEDGHLEIVEVLLKYGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG ++D LY A +G + ++ K ++ + +G T
Sbjct: 25 GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV-EVLLKNGADV-NAVDAIGFT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
LH+AA ++ + LLK + D+ ++K G TAF + +G ++ E + K N
Sbjct: 83 PLHLAAFIGHLEIAEVLLKHGA--DVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G TALH+AA + D K LL+ ++ D ++ +G T +AA S + V +++ N+
Sbjct: 57 GATALHLAAAYSRSDAAKRLLE--ASADANIQDNMGRTP-LHAAVSADAQGVFQILIRNR 113
Query: 132 DIAMVPDM-DGTLPIVRAAALE-QGQMVLLLHKQTKNSLTDD 171
+ M DGT P++ AA L +G + L++ + DD
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 155
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 70 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
N+G T LH A A+ + L++ +T DL + G T AA + ++E+++
Sbjct: 88 NMGRTPLHAAVSADAQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 130 NKDIAMVPDM 139
+ D+ V D+
Sbjct: 147 HADVNAVDDL 156
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH+AA+ ++ V+ LLK + D+ + G T AA G +EIVE +++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGA--DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 132 DI 133
D+
Sbjct: 105 DV 106
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
G + R+L++NG + D L+ AA G + + + K+ ++ G T
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE-VLLKHGADVNASDI-WGRT 82
Query: 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
LH+AA ++ V+ LL+ + D+ ++K G TAF + +G ++ E + K N
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH A Q + D V+ LL+ + L KKN G T F AA +G V++++ +
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFILAAIAGSVKLLKLFLSKGA 116
Query: 132 DI 133
D+
Sbjct: 117 DV 118
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
++LG L AA+A D V+ L M + D+A K+K G T AA +G +E+V+ +++
Sbjct: 22 SDLGKKLLE-AARAGQDDEVRIL--MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 129 GNKDI 133
D+
Sbjct: 79 AGADV 83
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 79 AAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
AA+A D V+ L M + D+ K+K G T AA G +EIVE ++K D+
Sbjct: 9 AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 41 LYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDL 100
LY A G + + ++ + +E+ Q+ LG+TALH AA D V+ LL + DL
Sbjct: 110 LYWACHGGHKDIVEXLFTQPNIELNQQ-NKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
G T LH A Q + D V+ LL+ + L KKN G T F AA +G V++++ +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 132 DI 133
D+
Sbjct: 97 DV 98
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
++LG L AA+A D V+ L M + D+A K+K G T AA +G +E+V+ +++
Sbjct: 4 SDLGKKLLE-AARAGQDDEVRIL--MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 129 GNKDI 133
D+
Sbjct: 61 AGADV 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,566,438
Number of Sequences: 62578
Number of extensions: 461647
Number of successful extensions: 1552
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1378
Number of HSP's gapped (non-prelim): 147
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)