Query 041247
Match_columns 507
No_of_seqs 407 out of 2651
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 08:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 1.8E-51 6.2E-56 417.7 28.3 326 2-348 12-379 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.4E-47 1.2E-51 386.3 28.8 312 4-332 80-400 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 7.7E-46 2.6E-50 363.1 26.6 289 3-337 24-329 (337)
4 1wdy_A 2-5A-dependent ribonucl 100.0 5.1E-44 1.8E-48 341.0 25.6 273 4-335 5-279 (285)
5 1wdy_A 2-5A-dependent ribonucl 100.0 2.1E-43 7.1E-48 336.8 26.2 228 3-264 38-281 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 2.9E-43 1E-47 346.3 24.6 292 3-348 23-315 (351)
7 2fo1_E LIN-12 protein; beta-ba 100.0 3.7E-43 1.3E-47 348.5 14.4 258 33-335 90-372 (373)
8 3d9h_A CDNA FLJ77766, highly s 100.0 3.9E-42 1.3E-46 328.3 21.0 258 34-335 12-280 (285)
9 4g8k_A 2-5A-dependent ribonucl 100.0 3.5E-41 1.2E-45 330.0 25.5 266 34-335 22-299 (337)
10 2fo1_E LIN-12 protein; beta-ba 100.0 9E-42 3.1E-46 338.6 15.9 256 3-300 93-371 (373)
11 2xai_A ASB-9, ankyrin repeat a 100.0 1.3E-40 4.6E-45 313.6 20.1 209 3-219 2-211 (261)
12 3d9h_A CDNA FLJ77766, highly s 100.0 2.8E-40 9.6E-45 315.4 20.3 254 3-301 14-280 (285)
13 3ljn_A Hypothetical protein; a 100.0 1.2E-40 4.2E-45 329.7 16.5 261 33-335 16-315 (364)
14 3ljn_A Hypothetical protein; a 100.0 1.8E-40 6.1E-45 328.5 17.5 264 3-301 19-315 (364)
15 3utm_A Tankyrase-1; tankyrase, 100.0 1.4E-39 4.9E-44 319.9 22.8 274 3-334 57-334 (351)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 6.4E-40 2.2E-44 307.5 18.6 211 84-334 35-248 (253)
17 2xai_A ASB-9, ankyrin repeat a 100.0 9.7E-40 3.3E-44 307.7 18.6 175 37-219 3-178 (261)
18 1k1a_A B-cell lymphoma 3-encod 100.0 4.5E-39 1.6E-43 299.2 17.5 226 69-333 6-240 (241)
19 1yyh_A HN1;, notch 1, ankyrin 100.0 5.5E-39 1.9E-43 301.2 18.1 229 32-299 5-247 (253)
20 3aji_A 26S proteasome non-ATPa 100.0 2.1E-38 7.2E-43 292.8 21.3 227 35-334 4-230 (231)
21 3b7b_A Euchromatic histone-lys 100.0 3.5E-38 1.2E-42 292.5 22.7 213 2-219 9-222 (237)
22 1oy3_D Transcription factor in 100.0 1.1E-38 3.8E-43 303.8 19.5 253 33-348 5-260 (282)
23 3b7b_A Euchromatic histone-lys 100.0 2.7E-38 9.2E-43 293.3 20.9 226 64-330 4-231 (237)
24 1k1a_A B-cell lymphoma 3-encod 100.0 1.4E-38 4.8E-43 295.9 18.5 224 2-259 7-240 (241)
25 3aji_A 26S proteasome non-ATPa 100.0 3E-38 1E-42 291.8 20.2 222 4-259 6-229 (231)
26 1oy3_D Transcription factor in 100.0 7.7E-38 2.6E-42 298.0 18.8 257 2-320 7-269 (282)
27 3kea_A K1L; tropism, ANK repea 100.0 1.9E-37 6.6E-42 295.7 20.1 216 69-335 28-247 (285)
28 1s70_B 130 kDa myosin-binding 100.0 3.9E-38 1.3E-42 302.9 13.9 271 10-330 4-285 (299)
29 2dzn_A Probable 26S proteasome 100.0 2.5E-37 8.7E-42 284.9 18.8 215 4-219 2-220 (228)
30 3kea_A K1L; tropism, ANK repea 100.0 2.6E-37 8.9E-42 294.8 19.1 259 13-325 8-268 (285)
31 3eu9_A Huntingtin-interacting 100.0 7.4E-37 2.5E-41 283.8 20.6 230 69-335 6-236 (240)
32 2dzn_A Probable 26S proteasome 100.0 8.8E-37 3E-41 281.3 19.6 220 37-330 2-226 (228)
33 4b93_B Ankyrin repeat domain-c 100.0 1.2E-37 4.2E-42 293.9 13.3 210 4-219 11-230 (269)
34 3eu9_A Huntingtin-interacting 100.0 4E-36 1.4E-40 278.8 22.6 225 2-259 7-234 (240)
35 4b93_B Ankyrin repeat domain-c 100.0 2E-37 6.7E-42 292.5 11.6 230 33-335 7-245 (269)
36 2f8y_A Notch homolog 1, transl 100.0 7.3E-36 2.5E-40 274.2 20.2 213 14-259 1-215 (223)
37 1s70_B 130 kDa myosin-binding 100.0 3.3E-36 1.1E-40 289.4 16.4 257 43-350 4-269 (299)
38 2f8y_A Notch homolog 1, transl 100.0 5.9E-36 2E-40 274.8 15.5 216 48-335 2-217 (223)
39 1sw6_A Regulatory protein SWI6 100.0 3.7E-37 1.3E-41 299.6 5.8 254 13-319 28-326 (327)
40 2rfa_A Transient receptor pote 100.0 4.8E-34 1.6E-38 263.8 21.1 189 3-196 2-220 (232)
41 2rfa_A Transient receptor pote 100.0 1.9E-33 6.4E-38 259.8 21.3 195 36-263 2-224 (232)
42 1ikn_D Protein (I-kappa-B-alph 100.0 8.1E-35 2.8E-39 269.8 10.9 215 2-219 6-231 (236)
43 3hra_A Ankyrin repeat family p 100.0 5.3E-33 1.8E-37 250.7 20.7 190 2-195 3-200 (201)
44 1ikn_D Protein (I-kappa-B-alph 100.0 2.3E-34 7.8E-39 266.7 10.7 214 69-348 5-221 (236)
45 4gpm_A Engineered protein OR26 100.0 4.9E-33 1.7E-37 242.7 17.2 160 1-165 1-160 (169)
46 2etb_A Transient receptor pote 100.0 5.2E-33 1.8E-37 260.9 18.1 190 4-197 2-245 (256)
47 1sw6_A Regulatory protein SWI6 100.0 1.6E-34 5.5E-39 281.0 8.1 255 36-348 22-318 (327)
48 3hra_A Ankyrin repeat family p 100.0 1.9E-32 6.7E-37 247.0 19.9 198 69-332 2-201 (201)
49 2pnn_A Transient receptor pote 100.0 1.2E-32 4.1E-37 261.0 17.9 205 2-211 11-271 (273)
50 2etb_A Transient receptor pote 100.0 2.2E-32 7.4E-37 256.7 16.7 191 36-259 1-245 (256)
51 2pnn_A Transient receptor pote 100.0 2.7E-32 9.1E-37 258.6 16.8 202 26-259 2-257 (273)
52 3jxi_A Vanilloid receptor-rela 100.0 8.5E-32 2.9E-36 253.2 15.5 190 4-198 5-250 (260)
53 4gpm_A Engineered protein OR26 100.0 9.7E-31 3.3E-35 228.2 18.4 156 39-200 6-162 (169)
54 3jxi_A Vanilloid receptor-rela 100.0 3.1E-31 1.1E-35 249.3 15.8 194 34-259 2-249 (260)
55 2aja_A Ankyrin repeat family p 100.0 9.5E-33 3.3E-37 271.3 2.6 292 5-329 66-369 (376)
56 3v30_A DNA-binding protein rfx 100.0 3.7E-30 1.3E-34 226.0 15.8 167 4-175 2-170 (172)
57 1ihb_A P18-INK4C(INK6), cyclin 100.0 3E-30 1E-34 224.2 14.9 159 2-165 3-161 (162)
58 2rfm_A Putative ankyrin repeat 100.0 5E-30 1.7E-34 229.5 16.4 159 32-195 30-189 (192)
59 3v30_A DNA-binding protein rfx 100.0 1.3E-29 4.5E-34 222.6 17.5 169 37-210 2-171 (172)
60 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.4E-29 4.7E-34 221.8 17.4 156 4-164 14-169 (169)
61 3v31_A Ankyrin repeat family A 100.0 9.1E-30 3.1E-34 222.4 16.0 158 3-165 2-159 (167)
62 4hbd_A KN motif and ankyrin re 100.0 1.3E-30 4.5E-35 247.1 11.0 189 4-196 76-273 (276)
63 2aja_A Ankyrin repeat family p 100.0 1.4E-31 4.7E-36 263.0 1.8 262 13-335 43-345 (376)
64 4hbd_A KN motif and ankyrin re 100.0 1.3E-29 4.5E-34 240.2 14.2 191 36-258 75-273 (276)
65 1awc_B Protein (GA binding pro 100.0 4.8E-29 1.7E-33 214.5 15.7 152 3-160 1-152 (153)
66 2rfm_A Putative ankyrin repeat 100.0 1E-28 3.5E-33 221.0 17.3 165 62-259 26-191 (192)
67 3v31_A Ankyrin repeat family A 100.0 9.9E-29 3.4E-33 215.8 16.4 158 36-198 2-160 (167)
68 3twr_A Tankyrase-2; ankyrin re 100.0 7.7E-29 2.6E-33 216.0 13.0 157 3-165 7-164 (165)
69 2vge_A RELA-associated inhibit 100.0 1.3E-30 4.4E-35 239.8 0.9 194 20-222 1-203 (229)
70 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3E-28 1E-32 210.2 15.4 153 4-163 2-155 (156)
71 2y1l_E Darpin-8.4; hydrolase-i 100.0 6.5E-28 2.2E-32 211.1 17.3 157 34-195 11-168 (169)
72 3f6q_A Integrin-linked protein 100.0 2E-28 6.7E-33 216.5 13.9 161 3-168 4-166 (179)
73 1bd8_A P19INK4D CDK4/6 inhibit 100.0 4.7E-28 1.6E-32 208.9 15.6 153 37-195 2-155 (156)
74 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.1E-28 7E-33 212.6 13.3 154 36-195 4-159 (162)
75 3twr_A Tankyrase-2; ankyrin re 100.0 2.7E-28 9.2E-33 212.6 12.7 158 33-195 4-162 (165)
76 3f6q_A Integrin-linked protein 100.0 3.1E-28 1E-32 215.3 12.7 167 35-206 3-170 (179)
77 1awc_B Protein (GA binding pro 100.0 1.6E-27 5.5E-32 204.9 16.4 150 37-192 2-152 (153)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.8E-29 3E-33 229.5 7.0 176 3-184 4-192 (239)
79 2vge_A RELA-associated inhibit 99.9 3.7E-29 1.3E-33 230.0 -1.6 186 69-328 18-207 (229)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.3E-27 7.9E-32 219.9 8.6 179 34-219 2-193 (239)
81 3t8k_A Uncharacterized protein 99.9 2.9E-26 9.9E-31 203.2 8.8 155 4-165 6-178 (186)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 4.5E-26 1.5E-30 196.5 9.4 139 2-146 10-149 (156)
83 1d9s_A Cyclin-dependent kinase 99.9 1.7E-25 6E-30 188.0 11.0 132 28-165 3-135 (136)
84 1d9s_A Cyclin-dependent kinase 99.9 1.8E-25 6.1E-30 188.0 9.5 126 2-132 10-136 (136)
85 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.5E-24 5.2E-29 179.4 12.9 126 3-132 1-126 (126)
86 3deo_A Signal recognition part 99.9 1.6E-25 5.5E-30 198.5 7.0 163 11-195 7-181 (183)
87 3t8k_A Uncharacterized protein 99.9 2.5E-25 8.6E-30 197.1 8.2 154 36-195 5-176 (186)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 2E-24 6.9E-29 181.5 12.7 127 33-164 10-136 (136)
89 1bi7_B P16INK4A, MTS1, multipl 99.9 6.8E-25 2.3E-29 189.1 9.8 140 33-178 8-149 (156)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 3.2E-24 1.1E-28 180.3 13.2 123 4-130 14-136 (136)
91 3ui2_A Signal recognition part 99.9 2.9E-25 1E-29 206.2 5.0 167 4-195 15-182 (244)
92 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.6E-23 5.4E-28 173.2 14.2 125 36-165 1-125 (126)
93 3deo_A Signal recognition part 99.9 9.9E-24 3.4E-28 186.9 11.3 139 3-163 43-181 (183)
94 3c5r_A BARD-1, BRCA1-associate 99.9 4.3E-24 1.5E-28 179.7 7.0 128 32-164 5-132 (137)
95 3ui2_A Signal recognition part 99.9 1.4E-23 4.9E-28 194.8 11.2 141 3-165 44-184 (244)
96 3c5r_A BARD-1, BRCA1-associate 99.9 1.3E-23 4.4E-28 176.8 6.3 126 2-131 8-133 (137)
97 3ehr_A Osteoclast-stimulating 99.9 2.3E-23 7.8E-28 190.6 7.4 128 34-165 70-197 (222)
98 2b0o_E UPLC1; arfgap, structur 99.9 5.2E-23 1.8E-27 196.8 9.0 144 34-186 148-299 (301)
99 3aaa_C Myotrophin, protein V-1 99.9 1E-22 3.5E-27 167.8 9.6 114 34-152 4-117 (123)
100 3aaa_C Myotrophin, protein V-1 99.9 1.2E-22 4E-27 167.4 8.6 116 3-122 6-121 (123)
101 3ehr_A Osteoclast-stimulating 99.9 1.5E-22 5.1E-27 185.2 8.0 133 69-205 70-204 (222)
102 2b0o_E UPLC1; arfgap, structur 99.9 1.5E-21 5.2E-26 186.6 14.9 139 71-219 150-298 (301)
103 1dcq_A PYK2-associated protein 99.8 6.5E-21 2.2E-25 180.1 10.2 120 73-195 131-260 (278)
104 3lvq_E ARF-GAP with SH3 domain 99.8 1.1E-20 3.7E-25 193.9 12.7 123 39-165 134-264 (497)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.9E-20 6.5E-25 145.8 11.0 92 71-165 1-92 (93)
106 1dcq_A PYK2-associated protein 99.8 6.2E-20 2.1E-24 173.4 15.5 193 103-335 62-264 (278)
107 3jue_A Arfgap with coiled-coil 99.8 2.2E-20 7.6E-25 182.6 12.6 144 71-217 198-347 (368)
108 3jue_A Arfgap with coiled-coil 99.8 1.7E-20 6E-25 183.3 11.4 147 33-184 195-348 (368)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5.9E-20 2E-24 143.0 10.3 91 37-131 2-92 (93)
110 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-19 5.9E-24 185.0 14.1 121 72-195 132-262 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-19 3.8E-24 147.6 7.5 104 69-175 6-110 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.9E-19 6.7E-24 146.1 7.3 107 33-144 5-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1.1E-17 3.6E-22 134.6 9.3 89 69-160 21-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 7E-17 2.4E-21 129.8 9.1 91 32-126 19-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 84.2 7.3 0.00025 36.9 11.1 214 4-219 3-229 (351)
116 3k49_A MRNA-binding protein PU 70.8 20 0.00068 34.1 9.7 187 33-219 38-234 (369)
117 3gvo_A Pumilio 2, pumilio homo 70.0 27 0.00092 32.9 10.4 212 7-218 40-264 (351)
118 3bwt_A Protein PUF4; pumilio, 60.6 40 0.0014 31.3 9.5 62 33-94 20-82 (333)
119 3k49_A MRNA-binding protein PU 39.6 80 0.0027 29.8 7.9 85 102-186 73-163 (369)
120 4ev6_A Magnesium transport pro 28.4 53 0.0018 30.6 4.5 20 448-467 282-301 (339)
121 1gp8_A Protein (scaffolding pr 23.2 58 0.002 19.2 2.2 17 40-56 16-32 (40)
122 3k62_A FEM-3 mRNA-binding fact 21.8 3.6E+02 0.012 25.8 9.1 270 33-335 36-350 (412)
123 2iub_A CORA, divalent cation t 20.9 63 0.0022 30.5 3.5 20 448-467 306-325 (363)
124 4g26_A Pentatricopeptide repea 20.7 1.3E+02 0.0045 29.7 5.9 89 175-296 110-199 (501)
125 3mkq_B Coatomer subunit alpha; 20.2 3.7E+02 0.013 22.2 7.7 132 38-196 9-141 (177)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-51 Score=417.74 Aligned_cols=326 Identities=18% Similarity=0.170 Sum_probs=238.6
Q ss_pred CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ 81 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~ 81 (507)
++|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~ 89 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAAR 89 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC-CCCCCCHHHHHHH
Confidence 3578999999999999999999999888888888889999999999999999988865 6778877 8888899999999
Q ss_pred cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247 82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH 161 (507)
Q Consensus 82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 161 (507)
.|+.+++++|+++ +++++..|..|.||||+|+..|+.+++++|++++++. ...+..|.||||+|+..|+.+++++|+
T Consensus 90 ~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll 166 (437)
T 1n11_A 90 IGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLL 166 (437)
T ss_dssp HTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999988 7788877888888888888777777777777777765 556666777777777777777777777
Q ss_pred hccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhc---------------------------------ccCC
Q 041247 162 KQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKR---------------------------------AENE 207 (507)
Q Consensus 162 ~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~---------------------------------d~~g 207 (507)
+.+. .+..+.+|.||||.|+..|+.+++++|+++ +..++.+ +..|
T Consensus 167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 245 (437)
T 1n11_A 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245 (437)
T ss_dssp HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence 7666 555666666666666666666666666655 2233334 4444
Q ss_pred chHHHHHHhcCCccc-cccccccccc------cccchhhh-hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHH
Q 041247 208 ETALHVLARKDLTST-NQNRRGTFFQ------RCFNLGAE-KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLI 279 (507)
Q Consensus 208 ~t~Lh~A~~~~~~~~-~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~L 279 (507)
.||||+|+..|+.++ ..++..+.+. +.+++..+ ..++ .+++++|++++. +++. .+..|+|||
T Consensus 246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~-~~~~------~~~~g~t~L 315 (437)
T 1n11_A 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH---VPVADVLIKHGV-MVDA------TTRMGYTPL 315 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC---HHHHHHHHHHTC-CTTC------CCSSCCCHH
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHhCCc-cCCC------CCCCCCCHH
Confidence 555555555554444 1122222221 23333333 3333 667777777766 5554 233448999
Q ss_pred HHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247 280 FDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM 348 (507)
Q Consensus 280 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t 348 (507)
|+|+.+|+.++|++|+++|+++ +.+|..|+||||+|+++|+.+++++|+++|+++ +.+|.+|+|
T Consensus 316 ~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~----~~~~~~g~t 379 (437)
T 1n11_A 316 HVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP----NEVSSDGTT 379 (437)
T ss_dssp HHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS----CCCCSSSCC
T ss_pred HHHHHcCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC----CCCCCCCCC
Confidence 9999999999999999999987 888889999999999999999999999999888 778888888
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.4e-47 Score=386.30 Aligned_cols=312 Identities=17% Similarity=0.139 Sum_probs=225.4
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN 83 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g 83 (507)
|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++. +.+.+.. +..|.||||+|+..|
T Consensus 80 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~g 157 (437)
T 1n11_A 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQACM-TKKGFTPLHVAAKYG 157 (437)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTT
T ss_pred CCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCC-CCCCCCHHHHHHHcC
Confidence 34444444444444444444444444444444444444444444444444444432 3333333 455666666666666
Q ss_pred CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 041247 84 CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163 (507)
Q Consensus 84 ~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 163 (507)
+.+++++|+++ +++++..|..|.||||+|+..|+.+++++|++++++. +.++..|.||||+|+..|+.+++++|++.
T Consensus 158 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 158 KVRVAELLLER--DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp CHHHHHHHHHT--TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 66666666666 5666777777777777777777777777777777775 66777778888888888888888888887
Q ss_pred cc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccc-ccccccccc------cccc
Q 041247 164 TK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTST-NQNRRGTFF------QRCF 235 (507)
Q Consensus 164 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~-~~~~~~~~~------~~~~ 235 (507)
+. .+..+..|.||||.|+..|+.+++++|+++ +.+.+.+|..|+||||+|+..|+.++ ..++..+.. .+.+
T Consensus 235 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 313 (437)
T 1n11_A 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 313 (437)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCC
Confidence 77 677788888999999999999999998887 56677889999999999999998877 333333333 3456
Q ss_pred chhhh-hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHH
Q 041247 236 NLGAE-KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFH 314 (507)
Q Consensus 236 ~~~~~-~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~ 314 (507)
++.++ ..++ .+++++|+++++ +++. .+. .|+||||+|+++|+.++|++|+++|+++ +.+|.+|+|||+
T Consensus 314 ~L~~A~~~g~---~~~v~~Ll~~ga-d~n~----~~~--~g~t~L~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~l~ 382 (437)
T 1n11_A 314 PLHVASHYGN---IKLVKFLLQHQA-DVNA----KTK--LGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLA 382 (437)
T ss_dssp HHHHHHHSSC---SHHHHHHHHTTC-CTTC----CCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCSSSCCHHH
T ss_pred HHHHHHHcCc---HHHHHHHHhcCC-CCCC----CCC--CCCCHHHHHHHCChHHHHHHHHHCcCCC-CCCCCCCCCHHH
Confidence 66666 4444 899999999998 7765 333 4499999999999999999999999998 999999999999
Q ss_pred HHHHhCchHHHHHHHhch
Q 041247 315 VAVLNRLEELFKFIYDAK 332 (507)
Q Consensus 315 ~A~~~~~~~iv~~Ll~~g 332 (507)
+|.+.|+.+++++|....
T Consensus 383 ~A~~~g~~~~~~~l~~~~ 400 (437)
T 1n11_A 383 IAKRLGYISVTDVLKVVT 400 (437)
T ss_dssp HHHHTTCHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHhcc
Confidence 999999999999997654
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=7.7e-46 Score=363.09 Aligned_cols=289 Identities=17% Similarity=0.109 Sum_probs=255.4
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccc-cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDS-LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ 81 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~ 81 (507)
+|.||||.|+++|+.++|++||++|++++.++. .|+||||+|+..|+.+++++|++. +++++.+ +..+.+|++.++.
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~-~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR-KKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhh-ccCCCchhHHHHh
Confidence 367999999999999999999999999988765 599999999999999999988864 8889888 9999999999999
Q ss_pred cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCC---------ccCCCCCChHHHHHHHcC
Q 041247 82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIA---------MVPDMDGTLPIVRAAALE 152 (507)
Q Consensus 82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~g 152 (507)
.++.++++.+++. +.+++..|..|.||||+|+..|+.+++++|+++|+++. ...+..|.||||+|+..|
T Consensus 102 ~~~~~~~~~~~~~--~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 102 AGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HTCHHHHHHHHTT--TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred cccchhhHHhhhc--cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 9999999999998 79999999999999999999999999999999998862 234567899999999999
Q ss_pred cHHHHHHHHhc-cc-cccCCCChhhHHHHHHHcCC----hHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccc
Q 041247 153 QGQMVLLLHKQ-TK-NSLTDDDCIELLVQLIETGF----YVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNR 226 (507)
Q Consensus 153 ~~~~v~~Ll~~-~~-~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~ 226 (507)
+.+++++|++. ++ ++..|..|.|++|.++..+. .++++.|++. +.+++.+|.+|+||||+|+..++
T Consensus 180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~------- 251 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKH------- 251 (337)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTC-------
T ss_pred CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhh-------
Confidence 99999999965 66 88899999999998877654 3467777777 77888999999999999999999
Q ss_pred cccccccccchhhhhhhhHHHHHHHHHHHHH-HhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccccc
Q 041247 227 RGTFFQRCFNLGAEKEENKQALELVESLWTE-VVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKC 305 (507)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~ 305 (507)
.++++.|++. +. +++. .+.+| +||||+|+++|+.++|++|+++|+++ +
T Consensus 252 ---------------------~~~v~~Ll~~~~~-~vn~----~d~~G--~TpL~~A~~~g~~~iv~~Ll~~GAd~-n-- 300 (337)
T 4g8k_A 252 ---------------------LGLVQRLLEQEHI-EIND----TDSDG--KTALLLAVELKLKKIAELLCKRGAST-D-- 300 (337)
T ss_dssp ---------------------HHHHHHHHTSTTC-CTTC----BCTTS--CBHHHHHHHTTCHHHHHHHHTTSCSS-T--
T ss_pred ---------------------hHHHHHHHHhcCC-cccC----cCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCC-C--
Confidence 9999999874 44 5554 44444 99999999999999999999999987 4
Q ss_pred ccCCCchHHHHHHhCchHHHHHHHhchhhhhh
Q 041247 306 DENGYTIFHVAVLNRLEELFKFIYDAKSIADL 337 (507)
Q Consensus 306 d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~ 337 (507)
++||||+|+++++.++|++|+++||+++.
T Consensus 301 ---~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 301 ---CGDLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp ---TCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred ---CCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 45799999999999999999999999854
No 4
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.1e-44 Score=340.96 Aligned_cols=273 Identities=15% Similarity=0.089 Sum_probs=179.2
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCCCCCc-cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
|.||||.|++.|+.+++++|+++|.+.+.. +..|.||||+|+..|+.+++++|++. +.+++.+ |..|.||||+|+..
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR-KKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHH
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHc
Confidence 555666666666666666666665555544 44555555555555555555555543 4445544 55555555555555
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|+++++++ +..+.....
T Consensus 83 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~------------------- 140 (285)
T 1wdy_A 83 GSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKED------------------- 140 (285)
T ss_dssp TCHHHHHHHHHT--TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHH-------------------
T ss_pred CCHHHHHHHHHc--CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHH-------------------
Confidence 555555555555 4555555555555555555555555555555555553 222110000
Q ss_pred ccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhh
Q 041247 163 QTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKE 242 (507)
Q Consensus 163 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (507)
....+..|.||||.|+..|+.+++++|++..+.+++.+|..|+||||+|+..++.
T Consensus 141 ---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~---------------------- 195 (285)
T 1wdy_A 141 ---QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD---------------------- 195 (285)
T ss_dssp ---HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT----------------------
T ss_pred ---HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc----------------------
Confidence 0112556667777777777777777777765666777788888888888877761
Q ss_pred hhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHH-HCcccccccccCCCchHHHHHHhCc
Q 041247 243 ENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIR-EYADLMRKCDENGYTIFHVAVLNRL 321 (507)
Q Consensus 243 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~L~~A~~~~~ 321 (507)
....+++++|++++. +++. .+.. |+||||+|+++|+.+++++|++ .|+++ +.+|..|+||||+|+++++
T Consensus 196 --~~~~~i~~~Ll~~g~-~~~~----~~~~--g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~~~~g~t~l~~A~~~~~ 265 (285)
T 1wdy_A 196 --SDVEAITHLLLDHGA-DVNV----RGER--GKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKL 265 (285)
T ss_dssp --TTHHHHHHHHHHTTC-CSSC----CCTT--SCCHHHHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred --chHHHHHHHHHHcCC-CCCC----cCCC--CCcHHHHHHHcCCHHHHHHHHhccCCCc-cccCCCCCcHHHHHHHcCc
Confidence 112678888888887 6664 2333 4899999999999999999998 78887 8899999999999999999
Q ss_pred hHHHHHHHhchhhh
Q 041247 322 EELFKFIYDAKSIA 335 (507)
Q Consensus 322 ~~iv~~Ll~~ga~~ 335 (507)
.+++++|+++|+++
T Consensus 266 ~~i~~~Ll~~Ga~~ 279 (285)
T 1wdy_A 266 KKIAELLCKRGAST 279 (285)
T ss_dssp HHHHHHHHHHSSCS
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999987
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-43 Score=336.77 Aligned_cols=228 Identities=19% Similarity=0.183 Sum_probs=202.9
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
+|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|.||||+|+..
T Consensus 38 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~ 115 (285)
T 1wdy_A 38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNEC-DFYGFTAFMEAAVY 115 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCB-CTTCCBHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CcccCCHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999988875 7888888 99999999999999
Q ss_pred CCHHHHHHHHHcCCchhhccc----------ccCCCcHHHHHHHcCcHHHHHHHHhc-CCCCCccCCCCCChHHHHHHHc
Q 041247 83 NCIDFVKELLKMMSTEDLAKK----------NKIGCTAFFYAAASGMVEIVEEMMKG-NKDIAMVPDMDGTLPIVRAAAL 151 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~----------d~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~ 151 (507)
|+.+++++|+++ +.+++.. +..|.||||+|+..|+.+++++|++. +.++ +.+|..|.||||+|+..
T Consensus 116 ~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~ 192 (285)
T 1wdy_A 116 GKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLS 192 (285)
T ss_dssp TCHHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHC
T ss_pred CCHHHHHHHHHh--CCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence 999999999999 7887776 78899999999999999999999987 8886 88999999999999999
Q ss_pred Cc----HHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccc
Q 041247 152 EQ----GQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNR 226 (507)
Q Consensus 152 g~----~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~ 226 (507)
++ .+++++|++.+. .+.++.+|.||||.|++.|+.+++++|++..+.+++.+|.+|+||||+|++.++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~------- 265 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL------- 265 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC-------
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCc-------
Confidence 98 889999999988 777888888888888888888888888886677777777788888888877777
Q ss_pred cccccccccchhhhhhhhHHHHHHHHHHHHHHhhccch
Q 041247 227 RGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSES 264 (507)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~ 264 (507)
.+++++|+++|+ +++.
T Consensus 266 ---------------------~~i~~~Ll~~Ga-~~~~ 281 (285)
T 1wdy_A 266 ---------------------KKIAELLCKRGA-STDC 281 (285)
T ss_dssp ---------------------HHHHHHHHHHSS-CSCC
T ss_pred ---------------------HHHHHHHHHcCC-CCCc
Confidence 777777777776 5554
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.9e-43 Score=346.27 Aligned_cols=292 Identities=17% Similarity=0.095 Sum_probs=233.1
Q ss_pred CcccHHHHHHHcCCChhhHHHHhC-CCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSN-GGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ 81 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~ 81 (507)
.+.|+||.|++.|+.+.++.++.. +.+.+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~ 100 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAK-DKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHH
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHH
Confidence 367999999999999999888876 666777889999999999999999999988865 7888888 8999999999999
Q ss_pred cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247 82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH 161 (507)
Q Consensus 82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 161 (507)
.|+.+++++|+++ +++++..|..|.||||+|+..|+.+++++|+++|++. +..+..|.||+++|+..+..+.+++..
T Consensus 101 ~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 101 YGHYEVTELLLKH--GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp TTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhh
Confidence 9999999999999 8999999999999999999999999999999999996 888999999999988777777666655
Q ss_pred hccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhh
Q 041247 162 KQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEK 241 (507)
Q Consensus 162 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (507)
.. .++..++..++.+.++.++.... .....+..|.||||+|+..++
T Consensus 178 ~~-----------~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~---------------------- 223 (351)
T 3utm_A 178 KG-----------HSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLH---------------------- 223 (351)
T ss_dssp HH-----------HHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCCS----------------------
T ss_pred cc-----------cHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCHHHHHHHHhC----------------------
Confidence 42 45666677777777777776632 233456677778887777744
Q ss_pred hhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCc
Q 041247 242 EENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRL 321 (507)
Q Consensus 242 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~ 321 (507)
....+++++|++++. +++. .+. .|+||||+|+++|+.+++++|+++|+++ +.+|..|+||||+|+.+++
T Consensus 224 ---~~~~~~~~~Ll~~g~-~~~~----~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~~ 292 (351)
T 3utm_A 224 ---PKRKQVAELLLRKGA-NVNE----KNK--DFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGH 292 (351)
T ss_dssp ---TTHHHHHHHHHHTTC-CTTC----CCT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred ---ccHHHHHHHHHHcCC-CcCC----cCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc
Confidence 111677777777776 5554 222 3377888888888888888888777776 7777777888888887778
Q ss_pred hHHHHHHHhchhhhhhhhccccCCCCC
Q 041247 322 EELFKFIYDAKSIADLMVDSNDGEGEM 348 (507)
Q Consensus 322 ~~iv~~Ll~~ga~~~~~~~~~d~~g~t 348 (507)
.+++++|+++|+++ +.+|.+|+|
T Consensus 293 ~~~v~~Ll~~gad~----~~~~~~g~t 315 (351)
T 3utm_A 293 LQTCRLLLSYGSDP----SIISLQGFT 315 (351)
T ss_dssp HHHHHHHHHTTCCT----TCCCTTSCC
T ss_pred HHHHHHHHHcCCCC----CCcCCCCCC
Confidence 88888888777776 667777777
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-43 Score=348.54 Aligned_cols=258 Identities=17% Similarity=0.149 Sum_probs=225.0
Q ss_pred ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccC-CCCCcHHHHHHHcCCHHHHHHHH--------HcCCchhhccc
Q 041247 33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEIT-NLGNTALHVAAQANCIDFVKELL--------KMMSTEDLAKK 103 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~-~~g~t~Lh~Aa~~g~~e~v~~Ll--------~~~~~~~~~~~ 103 (507)
.+..|.||||.|+..|+ ++++.|+. .+++.. | ..|+||||+|+..|+.+++++|+ +. |++++.+
T Consensus 90 ~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~-d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~--ga~vn~~ 162 (373)
T 2fo1_E 90 PEPESPIKLHTEAAGSY-AITEPITR---ESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAM 162 (373)
T ss_dssp ----CCCHHHHHHHSSS-CCCSCCST---TTTTTC-CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT--CCCTTCC
T ss_pred CCCCCccHHHHHhcCCc-hHHHHhcc---cccccc-CCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CCCCcCC
Confidence 46789999999999665 77776643 457777 5 78999999999999998888877 56 8999999
Q ss_pred ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcc---c-cccCCCChhhHHHH
Q 041247 104 NKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT---K-NSLTDDDCIELLVQ 179 (507)
Q Consensus 104 d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~---~-~~~~~~~g~t~L~~ 179 (507)
|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+ . .+..|.+|.||||.
T Consensus 163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~ 241 (373)
T 2fo1_E 163 DCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241 (373)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence 999999999999999999999999999997 889999999999999999999999999988 4 77789999999999
Q ss_pred HHHcC---ChHHHHHHHhcCchhhh--------hcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHH
Q 041247 180 LIETG---FYVVALQLLRDRPRLAT--------KRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQAL 248 (507)
Q Consensus 180 A~~~~---~~~~v~~Ll~~~~~~~~--------~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (507)
|+..+ +.+++++|++.. .+++ .+|..|+||||+|+..|+ .
T Consensus 242 A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~----------------------------~ 292 (373)
T 2fo1_E 242 VAHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSN----------------------------M 292 (373)
T ss_dssp HHHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCC----------------------------H
T ss_pred HHHhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCC----------------------------H
Confidence 99998 899999999983 3333 367799999999999999 9
Q ss_pred HHHHHHHHHH-hhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHH
Q 041247 249 ELVESLWTEV-VLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKF 327 (507)
Q Consensus 249 ~~v~~Ll~~~-~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~ 327 (507)
+++++|++++ . +++. .+.. |+||||+|+++|+.+++++|+++|+++ +.+|..|+||||+|+.+++.+++++
T Consensus 293 ~~v~~Ll~~~~~-~~n~----~d~~--g~TpL~~A~~~g~~~iv~~Ll~~gad~-~~~d~~g~t~l~~A~~~g~~~iv~~ 364 (373)
T 2fo1_E 293 PIVKYLVGEKGS-NKDK----QDED--GKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDI 364 (373)
T ss_dssp HHHHHHHHHSCC-CTTC----CCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCC-CccC----cCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc-cCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999886 5 6554 3344 499999999999999999999999998 9999999999999999999999999
Q ss_pred HHhchhhh
Q 041247 328 IYDAKSIA 335 (507)
Q Consensus 328 Ll~~ga~~ 335 (507)
|+++|++.
T Consensus 365 Ll~~~a~~ 372 (373)
T 2fo1_E 365 FDRCRPER 372 (373)
T ss_dssp HHTTC---
T ss_pred HHhcCccc
Confidence 99998764
No 8
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.9e-42 Score=328.27 Aligned_cols=258 Identities=11% Similarity=0.039 Sum_probs=202.9
Q ss_pred cccCCHHhHHHHHcCCHHHHHHHHhhch----------hccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhccc
Q 041247 34 DSLRRLKLYRAALNGDWAVAKDIYDKYK----------VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKK 103 (507)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~----------~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~ 103 (507)
...|.|+||+|+..|+.+.+..++...+ ..++.+ |..|+||||+|+..|+.+++++|++. +.+++.+
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~ 88 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNII 88 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEE
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCc
Confidence 5578899999999999777776554422 123444 88899999999999999999999998 7899999
Q ss_pred ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHc
Q 041247 104 NKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIET 183 (507)
Q Consensus 104 d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~ 183 (507)
|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++....+.+|.||||.|+..
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARR 167 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHc
Confidence 999999999999999999999999999997 8899999999999999999999999999988222345699999999999
Q ss_pred CChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccc
Q 041247 184 GFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSE 263 (507)
Q Consensus 184 ~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~ 263 (507)
|+.+++++|++. +.+++.+|..|+||||+|+..++ .+++++|+++++ +++
T Consensus 168 g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~ga-~~~ 217 (285)
T 3d9h_A 168 GHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQ----------------------------RACVKKLLESGA-DVN 217 (285)
T ss_dssp TCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTC----------------------------HHHHHHHHHTTC-CTT
T ss_pred CCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCc----------------------------HHHHHHHHHCCC-CCC
Confidence 999999999988 56778899999999999999999 999999999988 766
Q ss_pred hhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhc-hhhh
Q 041247 264 SVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDA-KSIA 335 (507)
Q Consensus 264 ~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~-ga~~ 335 (507)
. + ..|+||||+|++.|+.+++++|+++|+++ +.+|..|+||||+|+ ++.+++++|+++ |++.
T Consensus 218 ~-----~--~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 218 Q-----G--KGQDSPLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVELVP--PESPLAQLFLEREGASL 280 (285)
T ss_dssp C-----C--BTTBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred C-----C--CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence 2 3 33499999999999999999999999998 999999999999999 567999999998 6654
No 9
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.5e-41 Score=330.01 Aligned_cols=266 Identities=18% Similarity=0.175 Sum_probs=239.2
Q ss_pred cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247 34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY 113 (507)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~ 113 (507)
+.+|.|+||.|+++|+.++|++||+. +++++.+.+..|+||||+|++.|+.++|++|+++ |++++.+|..+.+|++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCCchhHH
Confidence 34688999999999999999999875 8899987345699999999999999999999999 89999999999999999
Q ss_pred HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-ccc----------CCCChhhHHHHHHH
Q 041247 114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSL----------TDDDCIELLVQLIE 182 (507)
Q Consensus 114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~----------~~~~g~t~L~~A~~ 182 (507)
++..+..+++..+++.++++ +.+|..|.||||+|+..|+.+++++|++.++ .+. .+..|.||||.|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~ 177 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHH
T ss_pred HHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHH
Confidence 99999999999999999997 8899999999999999999999999999987 332 35678999999999
Q ss_pred cCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcc
Q 041247 183 TGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSS 262 (507)
Q Consensus 183 ~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~ 262 (507)
.|+.+++++|+++.+.+++.+|..|+|++|.++..+.. ....+++++|+++++ ++
T Consensus 178 ~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~------------------------~~~~~i~~lLl~~ga-d~ 232 (337)
T 4g8k_A 178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD------------------------SDVEAITHLLLDHGA-DV 232 (337)
T ss_dssp HTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT------------------------TTHHHHHHHHHHTTC-CT
T ss_pred CCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc------------------------ccHHHHHHHHHHCCC-CC
Confidence 99999999999887888999999999999988776541 112568899999998 77
Q ss_pred chhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHH-CcccccccccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247 263 ESVSEISKLIARPTRLIFDAAKRGNVLFLLILIRE-YADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA 335 (507)
Q Consensus 263 ~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~ 335 (507)
+. .+..| +||||+|++.|+.++++.|++. ++++ +.+|.+|+||||+|+++|+.++|++|+++|+++
T Consensus 233 n~----~d~~g--~t~L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~ 299 (337)
T 4g8k_A 233 NV----RGERG--KTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKRGAST 299 (337)
T ss_dssp TC----CCGGG--CCHHHHHHHTTCHHHHHHHHTSTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred CC----cCCCC--CCHHHHHHHhhhhHHHHHHHHhcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 75 34445 9999999999999999999985 6776 999999999999999999999999999999987
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9e-42 Score=338.59 Aligned_cols=256 Identities=18% Similarity=0.072 Sum_probs=230.0
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCcc-ccCCHHhHHHHHcCCHHHHHHHHh-------hchhccccccCCCCCc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSED-SLRRLKLYRAALNGDWAVAKDIYD-------KYKVEIGQEITNLGNT 74 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~Aa~~g~~~~v~~ll~-------~~~~~i~~~~~~~g~t 74 (507)
+|.||||.|+..| .+++++|++. +.+..| ..|.||||+|+..|+.+++++|+. +.+.+++.+ |..|+|
T Consensus 93 ~g~t~L~~Aa~~~-~~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-d~~g~T 168 (373)
T 2fo1_E 93 ESPIKLHTEAAGS-YAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENT 168 (373)
T ss_dssp -CCCHHHHHHHSS-SCCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-CTTSCC
T ss_pred CCccHHHHHhcCC-chHHHHhccc--cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-CCCCCC
Confidence 5889999999955 5888888753 566666 789999999999999998887774 568899998 999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcC---CCCCccCCCCCChHHHHHHHc
Q 041247 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN---KDIAMVPDMDGTLPIVRAAAL 151 (507)
Q Consensus 75 ~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~---~~~~~~~~~~g~tpL~~A~~~ 151 (507)
|||+|+..|+.++|++|+++ |++++.+|..|.||||+|+..|+.+++++|++.+ .++ +..|..|.||||+|+..
T Consensus 169 pL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~ 245 (373)
T 2fo1_E 169 PLMLAVLARRRRLVAYLMKA--GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHN 245 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHS
T ss_pred HHHHHHHcChHHHHHHHHHC--CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHh
Confidence 99999999999999999999 8999999999999999999999999999999988 575 78899999999999999
Q ss_pred C---cHHHHHHHHhccc-ccc--------CCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247 152 E---QGQMVLLLHKQTK-NSL--------TDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL 219 (507)
Q Consensus 152 g---~~~~v~~Ll~~~~-~~~--------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 219 (507)
+ +.+++++|++.++ .+. .|..|.||||.|+..|+.+++++|++..+.+++.+|.+|+||||+|+..|+
T Consensus 246 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~ 325 (373)
T 2fo1_E 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 325 (373)
T ss_dssp CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC
Confidence 8 8999999999998 443 567899999999999999999999999778899999999999999999999
Q ss_pred ccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCc
Q 041247 220 TSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYA 299 (507)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~ 299 (507)
.+++++|+++++ +++. .+. .|+||||+|+++|+.+++++|+++++
T Consensus 326 ----------------------------~~iv~~Ll~~ga-d~~~----~d~--~g~t~l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 326 ----------------------------IEVVMYLIQQGA-SVEA----VDA--TDHTARQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp ----------------------------HHHHHHHHHTTC-CSSC----CCS--SSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred ----------------------------HHHHHHHHHcCC-CccC----CCC--CCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 999999999998 7775 333 44999999999999999999999987
Q ss_pred c
Q 041247 300 D 300 (507)
Q Consensus 300 ~ 300 (507)
+
T Consensus 371 ~ 371 (373)
T 2fo1_E 371 E 371 (373)
T ss_dssp -
T ss_pred c
Confidence 6
No 11
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=313.61 Aligned_cols=209 Identities=17% Similarity=0.068 Sum_probs=193.5
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
+|+||||+|+..|+.+++++|+++|.+++..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGV-TADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHc
Confidence 589999999999999999999999999999999999999999999999999988875 7889988 99999999999999
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
|+.+++++|+++ +++++. +..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 80 GSWDCVNLLLQH--GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp TCHHHHHHHHHT--TCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHC--CCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 999999999999 788775 456999999999999999999999999997 8899999999999999999999999999
Q ss_pred ccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247 163 QTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL 219 (507)
Q Consensus 163 ~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 219 (507)
.++ .+ .+..|.||||.|+..++.++++.|++. +.+++.+|.+|+||||+|+..+.
T Consensus 156 ~g~~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~~A~~~~~ 211 (261)
T 2xai_A 156 SGADVN-QGKGQDSPLHAVARTASEELACLLMDF-GADTQAKNAEGKRPVELVPPESP 211 (261)
T ss_dssp HTCCTT-CCBTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCTTCT
T ss_pred cCCCCC-CCCCCCChHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCChhhhcccccc
Confidence 998 55 488999999999999999999999998 77788999999999999996654
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=315.43 Aligned_cols=254 Identities=16% Similarity=0.091 Sum_probs=203.1
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCC-----------CCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCC
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGG-----------ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNL 71 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~-----------~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~ 71 (507)
.|.|+||+|+..|+.+.++.++..+. .....|..|+||||+|+..|+.+++++|++. +.+++.+ |..
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~ 91 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNII-TAD 91 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEE-CTT
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCC
Confidence 47899999999999877777655432 2345688999999999999999999998875 7888888 999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHc
Q 041247 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAAL 151 (507)
Q Consensus 72 g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 151 (507)
|+||||+|+..|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|++.++++ +. +..|.||||+|+..
T Consensus 92 g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 92 HVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDLASPIHEAARR 167 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTTSCHHHHHHHH
T ss_pred CCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHc
Confidence 99999999999999999999999 8999999999999999999999999999999999996 43 45599999999999
Q ss_pred CcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccc
Q 041247 152 EQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTF 230 (507)
Q Consensus 152 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~ 230 (507)
|+.+++++|++.+. .+..|.+|.||||.|+..|+.+++++|++. +.+++ .|..|+||||+|+..++
T Consensus 168 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~-~~~~g~t~L~~A~~~~~----------- 234 (285)
T 3d9h_A 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVN-QGKGQDSPLHAVVRTAS----------- 234 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTT-CCBTTBCHHHHHHHTTC-----------
T ss_pred CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCC-CCCCCCCHHHHHHHcCC-----------
Confidence 99999999999999 888999999999999999999999999998 45555 48899999999999999
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHH-Cccc
Q 041247 231 FQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIRE-YADL 301 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~ 301 (507)
.+++++|+++++ +++. .+.+| +||||+|+ ++.+++++|+++ ++++
T Consensus 235 -----------------~~~v~~Ll~~ga-d~~~----~d~~g--~t~l~~A~--~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 235 -----------------EELACLLMDFGA-DTQA----KNAEG--KRPVELVP--PESPLAQLFLEREGASL 280 (285)
T ss_dssp -----------------HHHHHHHHHTTC-CTTC----CCTTS--CCGGGGSC--TTSHHHHHHHHHC----
T ss_pred -----------------HHHHHHHHHCCC-CCCC----cCCCC--CCHHHHhc--CccHHHHHHHHhhccCC
Confidence 999999999988 7765 44444 99999999 456899999998 6654
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.2e-40 Score=329.71 Aligned_cols=261 Identities=15% Similarity=0.105 Sum_probs=156.2
Q ss_pred ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHH
Q 041247 33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFF 112 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh 112 (507)
.|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.++|++|+++ +++. .+..|.||||
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~--~~~~g~t~L~ 89 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASV--GEVH--SLWHGQKPIH 89 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHH--CCCC--CCBTTBCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHC--CCCc--cccCCCCHHH
Confidence 345555555555555555555555543 4455554 55555555555555555555555555 3322 2234555555
Q ss_pred HHHHcCcHHHHHHHHhc----CCCCCcc-----------------CCCCCChHHHHHHHcC--cHHHHHHHHhccc-ccc
Q 041247 113 YAAASGMVEIVEEMMKG----NKDIAMV-----------------PDMDGTLPIVRAAALE--QGQMVLLLHKQTK-NSL 168 (507)
Q Consensus 113 ~A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~-~~~ 168 (507)
+|+..|+.+++++|++. +.+. +. +|..|.||||+|+..| +.+++++|++.++ .+.
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~ 168 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC
T ss_pred HHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc
Confidence 55555555555555555 3332 22 4455556666666655 5566666665555 555
Q ss_pred CCCChhhHHHHHHHcCChHHHHHHHhcCch----hhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhh
Q 041247 169 TDDDCIELLVQLIETGFYVVALQLLRDRPR----LATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEEN 244 (507)
Q Consensus 169 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (507)
.|..|.||||.|+..|+.+++++|++.... .++.+|..|+||||+|+..|+
T Consensus 169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~------------------------- 223 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW------------------------- 223 (364)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC-------------------------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC-------------------------
Confidence 555556666666666666666666655222 155667777777777777777
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccc-----------cccccCCCchH
Q 041247 245 KQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLM-----------RKCDENGYTIF 313 (507)
Q Consensus 245 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-----------~~~d~~g~t~L 313 (507)
.+++++|+++++ +++. .+.. |.||||+|++.|+.+++++|++++++.. ...+..|+||+
T Consensus 224 ---~~~v~~Ll~~ga-d~~~----~d~~--g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 293 (364)
T 3ljn_A 224 ---EDVAMRFVEMGI-DVNM----EDNE--HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDF 293 (364)
T ss_dssp ---HHHHHHHHTTTC-CTTC----CCTT--SCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTT
T ss_pred ---HHHHHHHHHcCC-CCCC----CCCC--CCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccc
Confidence 777777777766 5554 2333 3777777777777777777777766531 12466788888
Q ss_pred HHHHHhCchHHHHHHHhchhhh
Q 041247 314 HVAVLNRLEELFKFIYDAKSIA 335 (507)
Q Consensus 314 ~~A~~~~~~~iv~~Ll~~ga~~ 335 (507)
+.|+..++.+.+..|++.+++.
T Consensus 294 ~~aa~~~~~~~v~~ll~~~~~~ 315 (364)
T 3ljn_A 294 VPAAADPSKQEVLQLLQEKLDE 315 (364)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHH
Confidence 8888888777777777776654
No 14
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.8e-40 Score=328.53 Aligned_cols=264 Identities=16% Similarity=0.094 Sum_probs=230.9
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
+|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|++. +.+++ +.+|.||||+|+..
T Consensus 19 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~---~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 19 ENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEVHS---LWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCC---CBTTBCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcc---ccCCCCHHHHHHHc
Confidence 578999999999999999999999999999999999999999999999999999876 44333 44799999999999
Q ss_pred CCHHHHHHHHHcCC--chhhcc-----------------cccCCCcHHHHHHHcC--cHHHHHHHHhcCCCCCccCCCCC
Q 041247 83 NCIDFVKELLKMMS--TEDLAK-----------------KNKIGCTAFFYAAASG--MVEIVEEMMKGNKDIAMVPDMDG 141 (507)
Q Consensus 83 g~~e~v~~Ll~~~~--~~~~~~-----------------~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g 141 (507)
|+.+++++|+++.. +.+++. +|..|.||||+|+..| +.+++++|+++|+++ +.+|..|
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g 173 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKAD 173 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTS
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCC
Confidence 99999999999720 123333 8889999999999999 999999999999997 8999999
Q ss_pred ChHHHHHHHcCcHHHHHHHHhccc------cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHH
Q 041247 142 TLPIVRAAALEQGQMVLLLHKQTK------NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLA 215 (507)
Q Consensus 142 ~tpL~~A~~~g~~~~v~~Ll~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 215 (507)
.||||+|+..|+.+++++|++.++ .+..|..|.||||.|+..|+.+++++|++. +.+++.+|.+|+||||+|+
T Consensus 174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~ 252 (364)
T 3ljn_A 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLSV 252 (364)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence 999999999999999999999876 456788999999999999999999999998 6778899999999999999
Q ss_pred hcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhH------HhhhhcCCChHHHHHHHcCcHH
Q 041247 216 RKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSE------ISKLIARPTRLIFDAAKRGNVL 289 (507)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~------~~~~~g~g~t~Lh~A~~~g~~~ 289 (507)
..|+ .+++++|++++. +.+.... ....+..++||++.|+..|+.+
T Consensus 253 ~~g~----------------------------~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~ 303 (364)
T 3ljn_A 253 RAAM----------------------------VLLTKELLQKTD-VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ 303 (364)
T ss_dssp HTCC----------------------------HHHHHHHHHHSC-HHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHH
T ss_pred HhCh----------------------------HHHHHHHHHcCC-chhhhcCcccCcccccccccccccchhhhhccCHH
Confidence 9999 999999999986 4432110 0012334599999999999999
Q ss_pred HHHHHHHHCccc
Q 041247 290 FLLILIREYADL 301 (507)
Q Consensus 290 iv~~Ll~~~~~~ 301 (507)
.+..|++.+.+.
T Consensus 304 ~v~~ll~~~~~~ 315 (364)
T 3ljn_A 304 EVLQLLQEKLDE 315 (364)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888776
No 15
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.4e-39 Score=319.90 Aligned_cols=274 Identities=18% Similarity=0.114 Sum_probs=246.9
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
+|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|.||||+|+..
T Consensus 57 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~ 134 (351)
T 3utm_A 57 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACVNAM-DLWQFTPLHEAASK 134 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHc
Confidence 588999999999999999999999999999999999999999999999999988875 7888888 99999999999999
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
|+.+++++|+++ +++++..|..|.||+|+|+..+..+.+++... .+++..++..++.+.++.++.
T Consensus 135 ~~~~~v~~Ll~~--g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~ 199 (351)
T 3utm_A 135 NRVEVCSLLLSH--GADPTLVNCHGKSAVDMAPTPELRERLTYEFK-------------GHSLLQAAREADLAKVKKTLA 199 (351)
T ss_dssp TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH-------------HHHHHHHHHTTCHHHHHHHTT
T ss_pred CCHHHHHHHHHc--CCCCccccCCCCcchHHHhhhhhHHHHHhhhc-------------ccHHHHHHHhccHHHHHHHHH
Confidence 999999999999 89999999999999999999888888887664 257888899999999999998
Q ss_pred ccc-cccCCCChhhHHHHHHHc---CChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchh
Q 041247 163 QTK-NSLTDDDCIELLVQLIET---GFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLG 238 (507)
Q Consensus 163 ~~~-~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~ 238 (507)
... ....+..|.||||.|+.. +..+++++|++. +.+++.+|.+|+||||+|+..|+
T Consensus 200 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~------------------- 259 (351)
T 3utm_A 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAH------------------- 259 (351)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTC-------------------
T ss_pred hhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCC-------------------
Confidence 877 556788899999999999 557899999988 67788999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHH
Q 041247 239 AEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVL 318 (507)
Q Consensus 239 ~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~ 318 (507)
.+++++|+++++ +++. .+.. |+||||+|+++|+.+++++|+++|+++ +.+|..|+||+|+|
T Consensus 260 ---------~~~v~~Ll~~ga-~~n~----~d~~--g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~~~~g~tal~~a-- 320 (351)
T 3utm_A 260 ---------NDVMEVLHKHGA-KMNA----LDSL--GQTALHRAALAGHLQTCRLLLSYGSDP-SIISLQGFTAAQMG-- 320 (351)
T ss_dssp ---------HHHHHHHHHTTC-CTTC----CCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHS--
T ss_pred ---------HHHHHHHHHCCC-CCCC----cCCC--CCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCChhhhh--
Confidence 999999999998 7765 3334 499999999999999999999999998 99999999999998
Q ss_pred hCchHHHHHHHhchhh
Q 041247 319 NRLEELFKFIYDAKSI 334 (507)
Q Consensus 319 ~~~~~iv~~Ll~~ga~ 334 (507)
+.+++++|.+.+..
T Consensus 321 --~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 321 --NEAVQQILSESTPM 334 (351)
T ss_dssp --CHHHHHHHHHC---
T ss_pred --hHHHHHHHHhcccc
Confidence 67889999887654
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.4e-40 Score=307.52 Aligned_cols=211 Identities=13% Similarity=0.131 Sum_probs=148.7
Q ss_pred CHHHHHHHHHcCCchhhc-ccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 84 CIDFVKELLKMMSTEDLA-KKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 84 ~~e~v~~Ll~~~~~~~~~-~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
+.+++++|++. +.+++ ..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus 35 ~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 111 (253)
T 1yyh_A 35 APAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIR 111 (253)
T ss_dssp -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred ChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 66777777766 45543 34666777777777777777777777777665 6666677777777777777777777776
Q ss_pred ccc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhh
Q 041247 163 QTK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAE 240 (507)
Q Consensus 163 ~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (507)
.+. .+..+.+|.||||.|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+
T Consensus 112 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~--------------------- 169 (253)
T 1yyh_A 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNN--------------------- 169 (253)
T ss_dssp STTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTC---------------------
T ss_pred cCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCC---------------------
Confidence 665 455666677777777777777777777775 55567778888888888888888
Q ss_pred hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhC
Q 041247 241 KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNR 320 (507)
Q Consensus 241 ~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~ 320 (507)
.+++++|+++++ +++. .+.. |.||||+|+++|+.+++++|+++|+++ +.+|..|+||+|+|+++|
T Consensus 170 -------~~~v~~Ll~~ga-~~~~----~~~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~g 234 (253)
T 1yyh_A 170 -------VDAAVVLLKNGA-NKDM----QNNR--EETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERM 234 (253)
T ss_dssp -------HHHHHHHHHTTC-CTTC----CCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred -------HHHHHHHHHcCC-CCCC----cCCC--CCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccCCCCHHHHHHHcC
Confidence 888888888887 6664 3333 489999999999999999999999998 899999999999999999
Q ss_pred chHHHHHHHhchhh
Q 041247 321 LEELFKFIYDAKSI 334 (507)
Q Consensus 321 ~~~iv~~Ll~~ga~ 334 (507)
+.+++++|.+....
T Consensus 235 ~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 235 HHDIVRLLDLEHHH 248 (253)
T ss_dssp CHHHHHHHHC----
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999876543
No 17
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=9.7e-40 Score=307.73 Aligned_cols=175 Identities=19% Similarity=0.147 Sum_probs=89.0
Q ss_pred CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247 37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA 116 (507)
Q Consensus 37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~ 116 (507)
|+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|+||||+|+.
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 78 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQ-GWAVNII-TADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACV 78 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT-TCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHH
Confidence 45555555555555555555543 4455554 55555555555555555555555555 45555555555555555555
Q ss_pred cCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247 117 SGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD 195 (507)
Q Consensus 117 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 195 (507)
.|+.+++++|+++|+++ + .+.+|.||||+|+..|+.+++++|++.++ .+..|.+|.||||.|+..|+.+++++|++.
T Consensus 79 ~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp HTCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 55555555555555553 2 23335555555555555555555555554 444444444444444444444444444444
Q ss_pred CchhhhhcccCCchHHHHHHhcCC
Q 041247 196 RPRLATKRAENEETALHVLARKDL 219 (507)
Q Consensus 196 ~~~~~~~~d~~g~t~Lh~A~~~~~ 219 (507)
+.+++ .|..|+||||+|+..++
T Consensus 157 -g~~~~-~~~~g~t~Lh~A~~~~~ 178 (261)
T 2xai_A 157 -GADVN-QGKGQDSPLHAVARTAS 178 (261)
T ss_dssp -TCCTT-CCBTTBCHHHHHHHHTC
T ss_pred -CCCCC-CCCCCCChHHHHHHcCC
Confidence 22222 13444444444444444
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.5e-39 Score=299.19 Aligned_cols=226 Identities=16% Similarity=0.138 Sum_probs=156.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHc---CCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHH
Q 041247 69 TNLGNTALHVAAQANCIDFVKELLKM---MSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPI 145 (507)
Q Consensus 69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~---~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 145 (507)
|.+|+||||+|++.|+.+++++|++. . +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l 83 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA 83 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence 55666666666666666666666651 1 4556666666666666666666666666666666664 55566666666
Q ss_pred HHHHHcCcHHHHHHHHhccc-----cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcc-cCCchHHHHHHhcCC
Q 041247 146 VRAAALEQGQMVLLLHKQTK-----NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRA-ENEETALHVLARKDL 219 (507)
Q Consensus 146 ~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~ 219 (507)
|+|+..|+.+++++|++.++ .+..+..|.||||.|+..|+.+++++|++. +.+++.++ ..|.||||+|+..++
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCC
Confidence 66666666666666666553 234555666666666666666666666666 34444555 678888888888888
Q ss_pred ccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCc
Q 041247 220 TSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYA 299 (507)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~ 299 (507)
.+++++|++++. +++. .+.. |+||||+|++.|+.+++++|+++|+
T Consensus 163 ----------------------------~~~v~~Ll~~g~-~~~~----~~~~--g~t~L~~A~~~~~~~~v~~Ll~~ga 207 (241)
T 1k1a_A 163 ----------------------------LSMVQLLLQHGA-NVNA----QMYS--GSSALHSASGRGLLPLVRTLVRSGA 207 (241)
T ss_dssp ----------------------------HHHHHHHHHTTC-CTTC----BCTT--SCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ----------------------------HHHHHHHHHcCC-CCCC----cCCC--CCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 888888888877 6654 2333 4899999999999999999999999
Q ss_pred ccccccccCCCchHHHHHHhCchHHHHHHHhchh
Q 041247 300 DLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKS 333 (507)
Q Consensus 300 ~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga 333 (507)
++ +.+|..|+||||+|+..++.++++.|.+.++
T Consensus 208 ~~-~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 208 DS-SLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp CT-TCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred CC-CCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 98 8999999999999999999999999988764
No 19
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.5e-39 Score=301.16 Aligned_cols=229 Identities=21% Similarity=0.159 Sum_probs=117.8
Q ss_pred CccccCCHHhHHHHHcC-------------CHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCch
Q 041247 32 SEDSLRRLKLYRAALNG-------------DWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE 98 (507)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g-------------~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~ 98 (507)
.+|.+|+||||+|+..| +.+++++|++. +.+++...|..|+||||+|+..|+.+++++|+++ ++
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~ 81 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SA 81 (253)
T ss_dssp ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT--TC
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CC
Confidence 34445555555555544 56666655544 3334333355666666666666666666666665 56
Q ss_pred hhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHH
Q 041247 99 DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELL 177 (507)
Q Consensus 99 ~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L 177 (507)
+++.+|..|+||||+|+..|+.+++++|++.++...+.++..|.||||+|+..|+.+++++|++.+. .+..|.+|.|||
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L 161 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 6666666666666666666666666666666552235556666666666666666666666666665 555566666666
Q ss_pred HHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHH
Q 041247 178 VQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTE 257 (507)
Q Consensus 178 ~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ 257 (507)
|.|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+ .+++++|+++
T Consensus 162 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~----------------------------~~~v~~Ll~~ 212 (253)
T 1yyh_A 162 HWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGS----------------------------YETAKVLLDH 212 (253)
T ss_dssp HHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTC----------------------------HHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCC----------------------------HHHHHHHHHc
Confidence 666666666666666665 44455666666666666666666 6666666666
Q ss_pred HhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCc
Q 041247 258 VVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYA 299 (507)
Q Consensus 258 ~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~ 299 (507)
++ +++. .+.. |+||||+|+++|+.+++++|.+..+
T Consensus 213 ga-~~~~----~d~~--g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 213 FA-NRDI----TDHM--DRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp TC-CTTC----CCTT--CCCHHHHHHHTTCHHHHHHHHC---
T ss_pred CC-Cccc----cccC--CCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 65 4443 2222 3666666666666666666665433
No 20
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.1e-38 Score=292.84 Aligned_cols=227 Identities=19% Similarity=0.166 Sum_probs=161.6
Q ss_pred ccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHH
Q 041247 35 SLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA 114 (507)
Q Consensus 35 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A 114 (507)
..+.+|||.|+..|+.+.++++++..+..++.+ |..|+||||+|+..|+.+++++|+++ +.+++.+|..|+||||+|
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHH
Confidence 345666777777777777776666655555555 66667777777777777777777766 566666666677777777
Q ss_pred HHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHh
Q 041247 115 AASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLR 194 (507)
Q Consensus 115 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 194 (507)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----------------------------- 130 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGA----------------------------- 130 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----------------------------
T ss_pred HHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----------------------------
Confidence 7777777777777666665 5666666666666666666666666666544
Q ss_pred cCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcC
Q 041247 195 DRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIAR 274 (507)
Q Consensus 195 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~ 274 (507)
+++.+|..|.||||+|+..|+ .+++++|++++. +++. .+..
T Consensus 131 ----~~~~~~~~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~g~-~~~~----~~~~-- 171 (231)
T 3aji_A 131 ----NPDAKDHYDATAMHRAAAKGN----------------------------LKMVHILLFYKA-STNI----QDTE-- 171 (231)
T ss_dssp ----CTTCCCTTSCCHHHHHHHHTC----------------------------HHHHHHHHHTTC-CSCC----CCTT--
T ss_pred ----CCCCcCCCCCcHHHHHHHcCC----------------------------HHHHHHHHhcCC-Cccc----cCCC--
Confidence 334455566677777776666 667777776666 5554 2233
Q ss_pred CChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhh
Q 041247 275 PTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSI 334 (507)
Q Consensus 275 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~ 334 (507)
|+||||+|++.|+.+++++|+++|+++ +.+|..|+||||+|++.++.+++++|.++|++
T Consensus 172 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 172 GNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 388888888888899999999999997 88899999999999999999999999998874
No 21
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.5e-38 Score=292.53 Aligned_cols=213 Identities=19% Similarity=0.147 Sum_probs=202.4
Q ss_pred CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ 81 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~ 81 (507)
.+|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++. +.+++.+ +..|.||||+|+.
T Consensus 9 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPK-DAEGSTCLHLAAK 86 (237)
T ss_dssp CCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCC-CTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCC-CCCCCcHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999988864 7888887 8999999999999
Q ss_pred cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247 82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH 161 (507)
Q Consensus 82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 161 (507)
.|+.+++++|++++ +.+++..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+
T Consensus 87 ~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll 164 (237)
T 3b7b_A 87 KGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILL 164 (237)
T ss_dssp TTCHHHHHHHHTTT-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred cCCHHHHHHHHhCC-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 99999999999994 4889999999999999999999999999999999997 889999999999999999999999999
Q ss_pred hccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247 162 KQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL 219 (507)
Q Consensus 162 ~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 219 (507)
+.++ .+..|..|.||||.|++.++.+++++|+++ +.+++.+|.+|+||||+|+..++
T Consensus 165 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCH
T ss_pred HcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHH
Confidence 9999 888999999999999999999999999998 67788999999999999999998
No 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.1e-38 Score=303.78 Aligned_cols=253 Identities=15% Similarity=0.041 Sum_probs=147.1
Q ss_pred ccccCCHHhHHHHHcCCHHHHHHHHhhchhc---cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCc
Q 041247 33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVE---IGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT 109 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~---i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t 109 (507)
.|..|+||||+|+..|+.+++++|++. +.+ ++.+ |..|+||||+|+..|+.+++++|+++ |++++.+|..|+|
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t 80 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHT 80 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence 455566666666666666666655543 222 4444 55566666666666666666666665 5566666666666
Q ss_pred HHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHH
Q 041247 110 AFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVA 189 (507)
Q Consensus 110 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v 189 (507)
|||+|+..|+.+++++|++++++... .... +. .. .. .......+.++++.+...+.....
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~--~~--~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 140 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPR-DASD--TY--LT--------------QS-QDCTPDTSHAPAAVDSQPNPENEE 140 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCC-CC---------------------------------------------------
T ss_pred HHHHHHHcCCcchhHhhhccCCCCch-hhHH--HH--hh--------------cc-cccCcchhcchhhhccccccchhh
Confidence 66666666666666666665554311 0000 00 00 00 011223345566666655555444
Q ss_pred HHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHh
Q 041247 190 LQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEIS 269 (507)
Q Consensus 190 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 269 (507)
...+...+..++.+|..|+||||+|+..|+ .+++++|+++++ +++. .
T Consensus 141 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~----------------------------~~~v~~Ll~~g~-~~~~----~ 187 (282)
T 1oy3_D 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKD----------------------------AEMVRLLRDAGA-DLNK----P 187 (282)
T ss_dssp ---CCCGGGGTTCCCTTSCCHHHHHHHTTC----------------------------HHHHHHHHHHTC-CTTC----C
T ss_pred hhhhhhhhhcCCCcCCCCcCHHHHHHHcCC----------------------------HHHHHHHHHcCC-CCCC----C
Confidence 445545566677788888888888888888 888888888887 6664 1
Q ss_pred hhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247 270 KLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM 348 (507)
Q Consensus 270 ~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t 348 (507)
+ +..|+||||+|+++|+.+++++|+++|+++ +.+|..|+||||+|+++++.+++++|+++|+++ +.+|.+|.|
T Consensus 188 ~-~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~----~~~~~~g~t 260 (282)
T 1oy3_D 188 E-PTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAPE----PEDGGDKLS 260 (282)
T ss_dssp C-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCC----CCCC-----
T ss_pred C-CCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCHHHHHHHcCCcHHHHHHHHcCCCc----CcCCCcccc
Confidence 1 112488888888888888888888888887 888888888888888888888888888888887 778888888
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.7e-38 Score=293.32 Aligned_cols=226 Identities=18% Similarity=0.152 Sum_probs=178.3
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCh
Q 041247 64 IGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTL 143 (507)
Q Consensus 64 i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 143 (507)
++.+ |..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.|
T Consensus 4 ~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 79 (237)
T 3b7b_A 4 FKME-HQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGST 79 (237)
T ss_dssp CCCS-SCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCC
T ss_pred cccc-cCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCc
Confidence 4444 67777788888877777778777777 6777777777778888887777778888877777775 667777778
Q ss_pred HHHHHHHcCcHHHHHHHHhccc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcc
Q 041247 144 PIVRAAALEQGQMVLLLHKQTK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTS 221 (507)
Q Consensus 144 pL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 221 (507)
|||+|+..|+.+++++|++.++ .+..+..|.||||.|+..++.+++++|++. +.+++.+|..|.||||+|+..|+
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~-- 156 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGC-- 156 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCC--
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCC--
Confidence 8888887777788888777773 566777777888888888888888887776 55566778888888888888888
Q ss_pred ccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccc
Q 041247 222 TNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADL 301 (507)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~ 301 (507)
.+++++|++++. +++. .+. .|.||||+|++.|+.+++++|+++|+++
T Consensus 157 --------------------------~~~~~~Ll~~g~-~~~~----~~~--~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 203 (237)
T 3b7b_A 157 --------------------------VDIAEILLAAKC-DLHA----VNI--HGDSPLHIAARENRYDCVVLFLSRDSDV 203 (237)
T ss_dssp --------------------------HHHHHHHHTTTC-CTTC----CCT--TCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred --------------------------HHHHHHHHHcCC-CCCC----cCC--CCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence 888888888877 6654 233 3489999999999999999999999998
Q ss_pred ccccccCCCchHHHHHHhCchHHHHHHHh
Q 041247 302 MRKCDENGYTIFHVAVLNRLEELFKFIYD 330 (507)
Q Consensus 302 ~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~ 330 (507)
+.+|..|+||||+|+.+++.+.+..+++
T Consensus 204 -~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 204 -TLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp -TCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred -CccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998866555543
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.4e-38 Score=295.86 Aligned_cols=224 Identities=20% Similarity=0.179 Sum_probs=204.7
Q ss_pred CCcccHHHHHHHcCCChhhHHHHh----CCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLS----NGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALH 77 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh 77 (507)
++|.||||+|+..|+.+++++|++ .|.+.+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~l~ 84 (241)
T 1k1a_A 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMAL-DRHGQTAAH 84 (241)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCCCHHH
Confidence 478999999999999999999997 7888888999999999999999999999988864 7888888 999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCch----hhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCC-CCCChHHHHHHHcC
Q 041247 78 VAAQANCIDFVKELLKMMSTE----DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD-MDGTLPIVRAAALE 152 (507)
Q Consensus 78 ~Aa~~g~~e~v~~Ll~~~~~~----~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g 152 (507)
+|+..|+.+++++|++. +. +++..|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|+..|
T Consensus 85 ~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDS--AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHHTTCHHHHHHHHHH--SCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHc--CCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcC
Confidence 99999999999999999 44 78899999999999999999999999999999997 6666 88999999999999
Q ss_pred cHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccccccc
Q 041247 153 QGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFF 231 (507)
Q Consensus 153 ~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~ 231 (507)
+.+++++|++.++ .+..|.+|.||||.|+..|+.+++++|++. +.+++.+|..|+||||+|+..++
T Consensus 162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~------------ 228 (241)
T 1k1a_A 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRV------------ 228 (241)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSSHHH------------
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHhcCc------------
Confidence 9999999999999 888999999999999999999999999998 67788999999999999999998
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247 232 QRCFNLGAEKEENKQALELVESLWTEVV 259 (507)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~v~~Ll~~~~ 259 (507)
.++++.|.++++
T Consensus 229 ----------------~~i~~~l~~~~a 240 (241)
T 1k1a_A 229 ----------------IDILRGKATRPA 240 (241)
T ss_dssp ----------------HHHHTC------
T ss_pred ----------------HHHHhhhccCCC
Confidence 899988887653
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3e-38 Score=291.79 Aligned_cols=222 Identities=21% Similarity=0.148 Sum_probs=204.4
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCC-CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGA-NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
+.||||.|+..|+.+.++++++.+.. .+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDK-DDAGWSPLHIAASA 83 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHH
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCc-CCCCCCHHHHHHHc
Confidence 56999999999999999999998755 345688999999999999999999988875 7888888 99999999999999
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus 84 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 84 GXDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 999999999999 8999999999999999999999999999999999996 8899999999999999999999999999
Q ss_pred ccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhh
Q 041247 163 QTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEK 241 (507)
Q Consensus 163 ~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (507)
.+. .+.+|..|.||||.|+..++.+++++|++. +.+++.+|..|+||||+|+..++
T Consensus 161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~---------------------- 217 (231)
T 3aji_A 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKGGLG---------------------- 217 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCHHHH----------------------
T ss_pred cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhhHH----------------------
Confidence 998 888889999999999999999999999988 66777889999999999988887
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 041247 242 EENKQALELVESLWTEVV 259 (507)
Q Consensus 242 ~~~~~~~~~v~~Ll~~~~ 259 (507)
.+++++|.++++
T Consensus 218 ------~~i~~lL~~~~a 229 (231)
T 3aji_A 218 ------LILKRLAEGEEA 229 (231)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred ------HHHHHHHccccc
Confidence 888888888776
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=7.7e-38 Score=297.99 Aligned_cols=257 Identities=13% Similarity=0.010 Sum_probs=168.1
Q ss_pred CCcccHHHHHHHcCCChhhHHHHhCCCC---CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLSNGGA---NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHV 78 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~ 78 (507)
.+|.||||+|+..|+.+++++|+++|++ .+..|..|.||||+|+..|+.+++++|++. +++++.+ |..|+||||+
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~g~tpL~~ 84 (282)
T 1oy3_D 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVA-ERGGHTALHL 84 (282)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCC-CTTSCCHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHH
Confidence 4789999999999999999999999987 567789999999999999999999988865 8899988 9999999999
Q ss_pred HHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHH-
Q 041247 79 AAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMV- 157 (507)
Q Consensus 79 Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v- 157 (507)
|+..|+.+++++|+++ +.+....... + ++.... ......+.++++.++..+.....
T Consensus 85 A~~~~~~~~v~~Ll~~--~~~~~~~~~~--~----------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 141 (282)
T 1oy3_D 85 ACRVRAHTCACVLLQP--RPSHPRDASD--T----------------YLTQSQ---DCTPDTSHAPAAVDSQPNPENEEE 141 (282)
T ss_dssp HTTTTCHHHHHHHSSS--CCSSCCCC------------------------------------------------------
T ss_pred HHHcCCcchhHhhhcc--CCCCchhhHH--H----------------Hhhccc---ccCcchhcchhhhccccccchhhh
Confidence 9999999999999998 4432211100 0 000011 11122344555555444333222
Q ss_pred HHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhccc-CCchHHHHHHhcCCcccccccccccccccc
Q 041247 158 LLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAE-NEETALHVLARKDLTSTNQNRRGTFFQRCF 235 (507)
Q Consensus 158 ~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~ 235 (507)
..+...+. .+..+..|.||||.|+..|+.+++++|++. +.+++.++. .|+||||+|+..|+
T Consensus 142 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~---------------- 204 (282)
T 1oy3_D 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQA---------------- 204 (282)
T ss_dssp --CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTC----------------
T ss_pred hhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCC----------------
Confidence 22222222 455666666666666666666777777666 344555554 48888888888888
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHH
Q 041247 236 NLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHV 315 (507)
Q Consensus 236 ~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~ 315 (507)
.+++++|+++++ +++. .+.. |+||||+|+++|+.+++++|+++|+++ +.+|..|+||+++
T Consensus 205 ------------~~~v~~Ll~~ga-d~~~----~d~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~ 264 (282)
T 1oy3_D 205 ------------ASVLELLLKAGA-DPTA----RMYG--GRTPLGSALLRPNPILARLLRAHGAPE-PEDGGDKLSPCSS 264 (282)
T ss_dssp ------------HHHHHHHHHTTC-CTTC----CCTT--SCCHHHHHHTSSCHHHHHHHHHTTCCC-CCCC---------
T ss_pred ------------HHHHHHHHHcCC-CCcc----cccC--CCCHHHHHHHcCCcHHHHHHHHcCCCc-CcCCCcccccccc
Confidence 888888888887 6665 3333 489999999999999999999999998 8999999999999
Q ss_pred HHHhC
Q 041247 316 AVLNR 320 (507)
Q Consensus 316 A~~~~ 320 (507)
|....
T Consensus 265 a~~~~ 269 (282)
T 1oy3_D 265 SGSDS 269 (282)
T ss_dssp -----
T ss_pred cCCcc
Confidence 87644
No 27
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.9e-37 Score=295.70 Aligned_cols=216 Identities=15% Similarity=0.058 Sum_probs=105.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA 148 (507)
Q Consensus 69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 148 (507)
|..|+||||+|+..|+.+++++|+++ +++++..| |+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 28 d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A 102 (285)
T 3kea_A 28 DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYA 102 (285)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHH
Confidence 44455555555555555555555544 44444442 445555555555555555555555443 44444455555555
Q ss_pred HHcCcHHHHHHHHhccc-cccCCCCh-hhHHHHHHHcCChHHHHHHHhcCchhhhhccc-CCchHHHHHHhcCCcccccc
Q 041247 149 AALEQGQMVLLLHKQTK-NSLTDDDC-IELLVQLIETGFYVVALQLLRDRPRLATKRAE-NEETALHVLARKDLTSTNQN 225 (507)
Q Consensus 149 ~~~g~~~~v~~Ll~~~~-~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~ 225 (507)
+..|+.+++++|++.++ .+..+..| .||||.|+..|+.+++++|++..+.. .+. .|+||||+|+..|+
T Consensus 103 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~------ 173 (285)
T 3kea_A 103 VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGH------ 173 (285)
T ss_dssp HHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTC------
T ss_pred HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcCh------
Confidence 55555555555555444 44444444 45555555555555555555443221 111 45555555555555
Q ss_pred ccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChH-HHHHHHcCcHHHHHHHHHHCcccccc
Q 041247 226 RRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRL-IFDAAKRGNVLFLLILIREYADLMRK 304 (507)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~-Lh~A~~~g~~~iv~~Ll~~~~~~~~~ 304 (507)
.+++++|+++++ +++. .+..| +|| ||+|+++|+.+++++|+++|+++ +.
T Consensus 174 ----------------------~~~v~~Ll~~ga-d~n~----~~~~g--~t~~L~~A~~~~~~~~v~~Ll~~gad~-~~ 223 (285)
T 3kea_A 174 ----------------------VDMMILLLDYMT-STNT----NNSLL--FIPDIKLAIDNKDIEMLQALFKYDINI-YS 223 (285)
T ss_dssp ----------------------HHHHHHHHHHHH-HTCT----TCCCB--CCTTHHHHHHHTCHHHHHHHTTSCBCS-TT
T ss_pred ----------------------HHHHHHHHHcCC-CCCc----ccCCC--CChHHHHHHHcCCHHHHHHHHHcCCCC-CC
Confidence 555555555555 4433 12222 444 55555555555555555555554 44
Q ss_pred cccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247 305 CDENGYTIFHVAVLNRLEELFKFIYDAKSIA 335 (507)
Q Consensus 305 ~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~ 335 (507)
.|. .|+..++.+++++|+++|++.
T Consensus 224 ~~~-------~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 224 ANL-------ENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp TTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred CCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence 431 234455555555555555544
No 28
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.9e-38 Score=302.92 Aligned_cols=271 Identities=18% Similarity=0.151 Sum_probs=224.3
Q ss_pred HHHHcCCChhhHHHHhCCCCCCC---------ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHH
Q 041247 10 WVMTNGIKEAPRVLLSNGGANLS---------EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA 80 (507)
Q Consensus 10 ~A~~~g~~~~v~~Ll~~g~~~~~---------~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa 80 (507)
.++..|..+.++.++........ .+..+.||||.|+..|+.+++++|++. +.+++.. |..|.||||+|+
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~ 81 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQAC 81 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHH
Confidence 46777888888888876544322 245678999999999999999999976 6888888 999999999999
Q ss_pred HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHH
Q 041247 81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLL 160 (507)
Q Consensus 81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 160 (507)
..|+.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++++.+
T Consensus 82 ~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~l 158 (299)
T 1s70_B 82 IDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNE 158 (299)
T ss_dssp HTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHH
Confidence 99999999999998 8999999999999999999999999999999999997 88999999999999999999999999
Q ss_pred Hhccc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchh
Q 041247 161 HKQTK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLG 238 (507)
Q Consensus 161 l~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~ 238 (507)
+.... .+..+..+.++++ ..+..++..........+..|.||||+|+..|+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~------------------- 211 (299)
T 1s70_B 159 VNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGY------------------- 211 (299)
T ss_dssp HHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTC-------------------
T ss_pred HhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCc-------------------
Confidence 87654 2222233333333 234455666555555678899999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHH
Q 041247 239 AEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVL 318 (507)
Q Consensus 239 ~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~ 318 (507)
.+++++|+++++ +++. .+.. |+||||+|+++|+.+++++|+++|+++ +.+|..|+||||+|.+
T Consensus 212 ---------~~~v~~Ll~~g~-d~~~----~d~~--g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 212 ---------TEVLKLLIQARY-DVNI----KDYD--GWTPLHAAAHWGKEEACRILVENLCDM-EAVNKVGQTAFDVADE 274 (299)
T ss_dssp ---------HHHHHHHHTTTC-CTTC----CCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTTTSCCS
T ss_pred ---------HHHHHHHHHcCC-CCCC----cCCC--CCcHHHHHHhcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 999999999888 7765 3334 499999999999999999999999998 9999999999999976
Q ss_pred hCchHHHHHHHh
Q 041247 319 NRLEELFKFIYD 330 (507)
Q Consensus 319 ~~~~~iv~~Ll~ 330 (507)
.. .+.++.+++
T Consensus 275 ~~-~~~l~~l~~ 285 (299)
T 1s70_B 275 DI-LGYLEELQK 285 (299)
T ss_dssp GG-GHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 43 334444433
No 29
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.5e-37 Score=284.91 Aligned_cols=215 Identities=17% Similarity=0.147 Sum_probs=195.4
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCCCCC-ccccCCHHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHHHHHH
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGANLS-EDSLRRLKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVAAQ 81 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh~Aa~ 81 (507)
|.||||+|+..|+.+++++|++++.+... .|..|.||||+|+..|+.+++++|++.. ..+++...+..|+||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 68999999999999999999999987765 7999999999999999999999998763 255555238899999999999
Q ss_pred cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247 82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH 161 (507)
Q Consensus 82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 161 (507)
.|+.+++++|++++.+.+++..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999998222889999999999999999999999999999999997 899999999999999999999999999
Q ss_pred hcc-c-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247 162 KQT-K-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL 219 (507)
Q Consensus 162 ~~~-~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 219 (507)
+.+ . .+..|.+|.||||.|+..|+.+++++|++..+.+++.+|.+|+||||+|+..+.
T Consensus 161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~ 220 (228)
T 2dzn_A 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 220 (228)
T ss_dssp TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTH
T ss_pred hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHH
Confidence 999 5 788999999999999999999999999955578889999999999999976543
No 30
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.6e-37 Score=294.81 Aligned_cols=259 Identities=15% Similarity=0.146 Sum_probs=219.7
Q ss_pred HcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 041247 13 TNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELL 92 (507)
Q Consensus 13 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll 92 (507)
...+.+.++.++..+ +++.+|..|.||||+|+..|+.+++++|++. +.+++.+ +|+||||+|+..|+.+++++|+
T Consensus 8 ~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 8 NTWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp GGCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC---TTCCHHHHHTTSSSCHHHHHHH
T ss_pred HhcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC---CCCCHHHHHHHcCCHHHHHHHH
Confidence 344444454455444 5778899999999999999999999988876 7888776 4899999999999999999999
Q ss_pred HcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCC-ChHHHHHHHcCcHHHHHHHHhccccccCCC
Q 041247 93 KMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDG-TLPIVRAAALEQGQMVLLLHKQTKNSLTDD 171 (507)
Q Consensus 93 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 171 (507)
++ |++++.+|..|+||||+|+..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|++.++......
T Consensus 83 ~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 159 (285)
T 3kea_A 83 FS--GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159 (285)
T ss_dssp HT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCS
T ss_pred HC--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccc
Confidence 99 8999999999999999999999999999999999997 8899999 899999999999999999999998332223
Q ss_pred ChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchH-HHHHHhcCCccccccccccccccccchhhhhhhhHHHHHH
Q 041247 172 DCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETA-LHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALEL 250 (507)
Q Consensus 172 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (507)
.|.||||.|+..|+.+++++|++. +.+++.+|..|+|| ||+|+..++ .++
T Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~----------------------------~~~ 210 (285)
T 3kea_A 160 ILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKD----------------------------IEM 210 (285)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTC----------------------------HHH
T ss_pred CCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCC----------------------------HHH
Confidence 899999999999999999999999 78889999999998 999999999 999
Q ss_pred HHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHH
Q 041247 251 VESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELF 325 (507)
Q Consensus 251 v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv 325 (507)
+++|+++|+ +++.. . +.|+..|+.+++++|+++|+++ ...+ ....+.+.......+++
T Consensus 211 v~~Ll~~ga-d~~~~-----------~--~~a~~~~~~~iv~~Ll~~g~~~-~~~~--~~~~~~~~~~~~~~~ii 268 (285)
T 3kea_A 211 LQALFKYDI-NIYSA-----------N--LENVLLDDAEIAKMIIEKHVEY-KSDS--YTKDLDIVKNNKLDEII 268 (285)
T ss_dssp HHHHTTSCB-CSTTT-----------T--GGGGTTTCHHHHHHHHHHHHHH-TTCT--TTTTCHHHHTCSHHHHH
T ss_pred HHHHHHcCC-CCCCC-----------C--hhhhhcCCHHHHHHHHHcCCCC-CCcc--ccchHHHHhhhhHHHHH
Confidence 999999998 77761 1 3567799999999999999987 3322 23345554444434443
No 31
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.4e-37 Score=283.75 Aligned_cols=230 Identities=16% Similarity=0.137 Sum_probs=183.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA 148 (507)
Q Consensus 69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 148 (507)
|..|.||||.|++.|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 66777888888888888888888887 6777777888888888888888888888888888776555566678888888
Q ss_pred HHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccc
Q 041247 149 AALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRR 227 (507)
Q Consensus 149 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~ 227 (507)
+..|+.+++++|++.+. .+..+..|.||||.|+..|+.+++++|++. +..++.+|..|.||||+|+..++.
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~------- 155 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHS------- 155 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCS-------
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCCh-------
Confidence 88888888888888777 667777788888888888888888888877 556677888888999988865540
Q ss_pred ccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccccccc
Q 041247 228 GTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDE 307 (507)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~ 307 (507)
.+++++|++.+. +++. .+. ..|.||||.|+++|+.+++++|+++|+++ +.+|.
T Consensus 156 --------------------~~~~~~L~~~~~-~~~~----~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~ 208 (240)
T 3eu9_A 156 --------------------VDPTRLLLTFNV-SVNL----GDK-YHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNI 208 (240)
T ss_dssp --------------------STTHHHHHHTTC-CTTC----CCT-TTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCT
T ss_pred --------------------HHHHHHHHhcCC-Ccch----hhc-cCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC
Confidence 567788888777 6654 221 13489999999999999999999999998 89999
Q ss_pred CCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247 308 NGYTIFHVAVLNRLEELFKFIYDAKSIA 335 (507)
Q Consensus 308 ~g~t~L~~A~~~~~~~iv~~Ll~~ga~~ 335 (507)
.|+||||+|++.++.+++++|++.|++.
T Consensus 209 ~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 209 KGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 9999999999999999999999998865
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8.8e-37 Score=281.27 Aligned_cols=220 Identities=18% Similarity=0.184 Sum_probs=130.9
Q ss_pred CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcc-cccCCCcHHHHHH
Q 041247 37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAK-KNKIGCTAFFYAA 115 (507)
Q Consensus 37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~-~d~~g~t~Lh~A~ 115 (507)
|+||||.|+..|+.+++++++++.+...+.+ |..|+||||+|+..|+.+++++|++++...+++. .|..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 4555555555555555555555543333333 5555555555555555555555555521133333 4555555555555
Q ss_pred HcCcHHHHHHHHhcC--CCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247 116 ASGMVEIVEEMMKGN--KDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLL 193 (507)
Q Consensus 116 ~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 193 (507)
..|+.+++++|++++ +++ +.++..|.||||+|+..|+.+++++|++.+.
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---------------------------- 131 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGA---------------------------- 131 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC----------------------------
Confidence 555555555555555 443 4455555555555555555555555555544
Q ss_pred hcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHH-hhccchhhHHhhhh
Q 041247 194 RDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEV-VLSSESVSEISKLI 272 (507)
Q Consensus 194 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~ 272 (507)
+++.+|..|+||||+|+..|+ .+++++|++++ . +++. .+..
T Consensus 132 -----~~~~~~~~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~g~~-~~~~----~d~~ 173 (228)
T 2dzn_A 132 -----SVRIKDKFNQIPLHRAASVGS----------------------------LKLIELLCGLGKS-AVNW----QDKQ 173 (228)
T ss_dssp -----CSCCCCTTSCCHHHHHHHTTC----------------------------HHHHHHHHTTTCC-CSCC----CCTT
T ss_pred -----CccccCCCCCCHHHHHHHcCC----------------------------HHHHHHHHhcCcc-cccC----cCCC
Confidence 344555556666666666665 66666666555 3 4433 2233
Q ss_pred cCCChHHHHHHHcCcHHHHHHHH-HHCcccccccccCCCchHHHHHHhCchHHHHHHHh
Q 041247 273 ARPTRLIFDAAKRGNVLFLLILI-REYADLMRKCDENGYTIFHVAVLNRLEELFKFIYD 330 (507)
Q Consensus 273 g~g~t~Lh~A~~~g~~~iv~~Ll-~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~ 330 (507)
|+||||+|++.|+.+++++|+ +.|+++ +.+|..|+||+|+|++. +++++|++
T Consensus 174 --g~t~L~~A~~~~~~~~v~~Ll~~~ga~~-~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 174 --GWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp --SCCHHHHHHHTTCHHHHHHHHHHHCCCS-CCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred --CCCHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 378888888888888888888 788887 88899999999999654 56666665
No 33
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=293.91 Aligned_cols=210 Identities=17% Similarity=0.162 Sum_probs=171.4
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCCC--------CCccccCCHHhHHHHHcCCHH-HHHHHHhhchhccccccCCCCCc
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGAN--------LSEDSLRRLKLYRAALNGDWA-VAKDIYDKYKVEIGQEITNLGNT 74 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~--------~~~~~~g~t~Lh~Aa~~g~~~-~v~~ll~~~~~~i~~~~~~~g~t 74 (507)
+.+||+.|+..|+.++|++|+++|+.. ...+..+.||||.|+..++.+ +++.|+ +.+.+++.+ |.+|+|
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll-~~Gadvn~~-d~~G~T 88 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP-ASGLGVNVT-SQDGSS 88 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTTCC-CTTSCC
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHH-HCCCCCCCc-CCCCCC
Confidence 458999999999999999999998754 234678999999999988865 566555 568999998 999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcH
Q 041247 75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQG 154 (507)
Q Consensus 75 ~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 154 (507)
|||+|+..|+.++|++|++. +++++.++..|.||+|.|+..++.+++++|++.|+++ +.+|..|.||||+|+..|+.
T Consensus 89 pLh~A~~~g~~~~v~~Ll~~--~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 89 PLHVAALHGRADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp HHHHHHHTTCTTHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCG
T ss_pred HHHHHHHcCcHHHHHHHHhc--CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCH
Confidence 99999999999999999999 8999999999999999999999999999999999997 89999999999999999999
Q ss_pred HHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247 155 QMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL 219 (507)
Q Consensus 155 ~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 219 (507)
+++++|++.|+ ++..+..|.||||.|+..|+.++++.|++. +.+++.+|.+|+||||+|+++++
T Consensus 166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHhCCc
Confidence 99999999999 889999999999999999999999999998 67889999999999999988775
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=278.78 Aligned_cols=225 Identities=22% Similarity=0.185 Sum_probs=207.8
Q ss_pred CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ 81 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~ 81 (507)
+.|.|||++|++.|+.+++++|+++|.+.+..+..|.||||.|+..|+.+++++|++. +.+++...+..|.||||+|+.
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~ 85 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATR 85 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHH
T ss_pred cccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHH
Confidence 3578999999999999999999999999999999999999999999999999988876 556665546679999999999
Q ss_pred cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCc-HHHHHHH
Q 041247 82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ-GQMVLLL 160 (507)
Q Consensus 82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~L 160 (507)
.|+.+++++|++. +++++.+|..|.||||+|+..|+.+++++|+++++++ +.++..|.||||+|+..++ .+++++|
T Consensus 86 ~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L 162 (240)
T 3eu9_A 86 QGHLSMVVQLMKY--GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLL 162 (240)
T ss_dssp HTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred cCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHH
Confidence 9999999999999 8999999999999999999999999999999999997 8899999999999997766 8999999
Q ss_pred Hhccc-cccCCC-ChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchh
Q 041247 161 HKQTK-NSLTDD-DCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLG 238 (507)
Q Consensus 161 l~~~~-~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~ 238 (507)
++.+. .+..+. .|.||||.|+..|+.+++++|++. +.+++.+|..|+||||+|++.++
T Consensus 163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~------------------- 222 (240)
T 3eu9_A 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKN------------------- 222 (240)
T ss_dssp HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTC-------------------
T ss_pred HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCc-------------------
Confidence 99998 676665 899999999999999999999999 67788999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHh
Q 041247 239 AEKEENKQALELVESLWTEVV 259 (507)
Q Consensus 239 ~~~~~~~~~~~~v~~Ll~~~~ 259 (507)
.+++++|++.+.
T Consensus 223 ---------~~~v~~L~~~~~ 234 (240)
T 3eu9_A 223 ---------VWMINHLQEARQ 234 (240)
T ss_dssp ---------HHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHhhh
Confidence 999999998876
No 35
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=292.53 Aligned_cols=230 Identities=16% Similarity=0.135 Sum_probs=115.0
Q ss_pred ccccCCHHhHHHHHcCCHHHHHHHHhhchhc-------cccccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCchhhcccc
Q 041247 33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVE-------IGQEITNLGNTALHVAAQANCI-DFVKELLKMMSTEDLAKKN 104 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~-------i~~~~~~~g~t~Lh~Aa~~g~~-e~v~~Ll~~~~~~~~~~~d 104 (507)
+|..+.++|+.|+..|+.+++++||+....+ ++.. +..|.||||.|+..++. ++++.|++. |+++|.+|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d 83 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTS 83 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------C--CCCTTCCC
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcC
Confidence 3555566666666666666666666542211 2223 45556666666655543 355666655 56666666
Q ss_pred cCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcC
Q 041247 105 KIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETG 184 (507)
Q Consensus 105 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~ 184 (507)
.+|+||||+|+..|+.+++++|++.++++ +.++..|.||++.|+..++.+++++|++.++
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~------------------- 143 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNA------------------- 143 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-------------------
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCC-------------------
Confidence 66666666666666666666666666664 5556666666666666666666666665554
Q ss_pred ChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccch
Q 041247 185 FYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSES 264 (507)
Q Consensus 185 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~ 264 (507)
+++.+|..|+||||+|+..|+ .+++++|+++++ +++.
T Consensus 144 --------------~~n~~d~~g~TpL~~A~~~g~----------------------------~~~v~~Ll~~ga-dvn~ 180 (269)
T 4b93_B 144 --------------KPNKKDLSGNTPLIYACSGGH----------------------------HELVALLLQHGA-SINA 180 (269)
T ss_dssp --------------CSCCCCTTCCCHHHHHHHTTC----------------------------GGGHHHHHHTTC-CTTC
T ss_pred --------------CCCCCCCCCCCHHHHHHHCCC----------------------------HHHHHHHHHCCC-CCCc
Confidence 334445555555555555555 555555555555 4443
Q ss_pred hhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCc-hHHHHHHHhchhhh
Q 041247 265 VSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRL-EELFKFIYDAKSIA 335 (507)
Q Consensus 265 ~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~-~~iv~~Ll~~ga~~ 335 (507)
.+.. |+||||+|+++|+.++|++|+++|+|+ +.+|..|+||||+|+++++ .++++.|...++..
T Consensus 181 ----~~~~--g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 181 ----SNNK--GNTALHEAVIEKHVFVVELLLLHGASV-QVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL 245 (269)
T ss_dssp ----BCTT--SCBHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred ----cccC--CCcHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence 2222 266666666666777777777777776 6777777777777766654 23444444444433
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=7.3e-36 Score=274.19 Aligned_cols=213 Identities=18% Similarity=0.183 Sum_probs=196.9
Q ss_pred cCCChhhHHHHhCCCCCCCc-cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 041247 14 NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELL 92 (507)
Q Consensus 14 ~g~~~~v~~Ll~~g~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll 92 (507)
.|+.+++++|+++|.+.+.. |..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 37899999999999988765 88999999999999999999988875 7888887 999999999999999999999999
Q ss_pred HcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCC
Q 041247 93 KMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDD 171 (507)
Q Consensus 93 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~ 171 (507)
++. +.+++..|..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..|.
T Consensus 79 ~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 156 (223)
T 2f8y_A 79 RNR-ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156 (223)
T ss_dssp HBT-TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HcC-CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 994 4489999999999999999999999999999999997 8899999999999999999999999999998 888999
Q ss_pred ChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHH
Q 041247 172 DCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELV 251 (507)
Q Consensus 172 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 251 (507)
.|.||||.|++.|+.+++++|++. +.+++.+|..|.||||+|++.++ .+++
T Consensus 157 ~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~----------------------------~~i~ 207 (223)
T 2f8y_A 157 REETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMH----------------------------HDIV 207 (223)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTC----------------------------HHHH
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHHhcc----------------------------hHHH
Confidence 999999999999999999999998 66778899999999999999999 9999
Q ss_pred HHHHHHHh
Q 041247 252 ESLWTEVV 259 (507)
Q Consensus 252 ~~Ll~~~~ 259 (507)
++|++++.
T Consensus 208 ~~L~~~g~ 215 (223)
T 2f8y_A 208 RLLDEYNL 215 (223)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 99999886
No 37
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.3e-36 Score=289.37 Aligned_cols=257 Identities=17% Similarity=0.112 Sum_probs=215.2
Q ss_pred HHHHcCCHHHHHHHHhhchhcccc--------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHH
Q 041247 43 RAALNGDWAVAKDIYDKYKVEIGQ--------EITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA 114 (507)
Q Consensus 43 ~Aa~~g~~~~v~~ll~~~~~~i~~--------~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A 114 (507)
.++..++.+.++.++..... +.. ..+..|.||||.|+..|+.++|++|+++ +++++..|..|.||||+|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 80 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETD-LEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQA 80 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTS-SCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHH
T ss_pred hHHHHHHHHHHHHHHccccc-cccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHH
Confidence 46777788888878865321 111 1234678999999999999999999999 899999999999999999
Q ss_pred HHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247 115 AASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLL 193 (507)
Q Consensus 115 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 193 (507)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||||.|+..++.++++.++
T Consensus 81 ~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll 159 (299)
T 1s70_B 81 CIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159 (299)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence 9999999999999999997 8899999999999999999999999999998 8889999999999999999999999999
Q ss_pred hcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhc
Q 041247 194 RDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIA 273 (507)
Q Consensus 194 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g 273 (507)
...+...+..+..+.+++ .+.+..++..+. ..+. ..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~-~~~~-----~~~~ 197 (299)
T 1s70_B 160 NRQGVDIEAARKEEERIM------------------------------------LRDARQWLNSGH-INDV-----RHAK 197 (299)
T ss_dssp HHHTCCHHHHHHHHHHHH------------------------------------HHHHHHHHHHTC-CCCC-----CCTT
T ss_pred hhcCCCchhhhhhhhhHH------------------------------------HHHHHHHHhccC-cchh-----hhcC
Confidence 875555544444433333 233344444443 2221 1223
Q ss_pred CCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCCcC
Q 041247 274 RPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFD 350 (507)
Q Consensus 274 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~~ 350 (507)
.|.||||.|+.+|+.+++++|+++|+++ +.+|..|+||||+|+.+|+.+++++|+++|+++ +.+|..|+|.+
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~----~~~d~~g~t~l 269 (299)
T 1s70_B 198 SGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDM----EAVNKVGQTAF 269 (299)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----TCCCTTSCCTT
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC----CCcCCCCCCHH
Confidence 4499999999999999999999999998 999999999999999999999999999999998 88999999943
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.9e-36 Score=274.80 Aligned_cols=216 Identities=19% Similarity=0.200 Sum_probs=151.5
Q ss_pred CCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHH
Q 041247 48 GDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM 127 (507)
Q Consensus 48 g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll 127 (507)
|+.+++++|+++ +.+++...|..|+||||+|+..|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 455666655544 4555544466777777777777777777777776 6677777777777777777777777777777
Q ss_pred hcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCC
Q 041247 128 KGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENE 207 (507)
Q Consensus 128 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g 207 (507)
+.++...+.++..|.||||+|+..|+.+++++|++.+. +++.+|..|
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---------------------------------~~~~~~~~g 125 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA---------------------------------DVNAVDDLG 125 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---------------------------------CTTCBCTTS
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC---------------------------------CCcCcCCCC
Confidence 77663346666777777777777777777776666554 234455566
Q ss_pred chHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCc
Q 041247 208 ETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGN 287 (507)
Q Consensus 208 ~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~ 287 (507)
+||||+|+..++ .+++++|++++. +++. .+. .|.||||+|+++|+
T Consensus 126 ~t~L~~A~~~~~----------------------------~~~v~~Ll~~g~-~~~~----~~~--~g~t~L~~A~~~~~ 170 (223)
T 2f8y_A 126 KSALHWAAAVNN----------------------------VDAAVVLLKNGA-NKDM----QNN--REETPLFLAAREGS 170 (223)
T ss_dssp CBHHHHHHHTTC----------------------------HHHHHHHHHTTC-CTTC----CCT--TCCCHHHHHHHHTC
T ss_pred CcHHHHHHHcCC----------------------------HHHHHHHHHcCC-CCCC----cCC--CCcCHHHHHHHcCC
Confidence 666666666666 666666666665 5543 222 33788888888888
Q ss_pred HHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247 288 VLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA 335 (507)
Q Consensus 288 ~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~ 335 (507)
.+++++|+++|+++ +.+|..|+||+|+|+++++.+++++|+++|+..
T Consensus 171 ~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 171 YETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 88888888888887 888888999999999999999999999888764
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-37 Score=299.63 Aligned_cols=254 Identities=12% Similarity=0.035 Sum_probs=183.5
Q ss_pred HcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccc----------------cCCCCCcHH
Q 041247 13 TNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE----------------ITNLGNTAL 76 (507)
Q Consensus 13 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~----------------~~~~g~t~L 76 (507)
.....+++++|+++|++.+..+..|.++++ |+.++++.|+++ +.+.+.. ......+.+
T Consensus 28 ~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (327)
T 1sw6_A 28 ITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQR-LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ 101 (327)
T ss_dssp EECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHH-HHC-----------------------------
T ss_pred hhhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHh-ccCCccccchHhhhcccccccccccCCccchh
Confidence 346678999999999999999999999988 999999999976 4443320 011122345
Q ss_pred HHHHHcCCHHHHHHHHHcCCchhhcc-cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCc--
Q 041247 77 HVAAQANCIDFVKELLKMMSTEDLAK-KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ-- 153 (507)
Q Consensus 77 h~Aa~~g~~e~v~~Ll~~~~~~~~~~-~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-- 153 (507)
|+|+..+..++++.|++. +++++. +|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+
T Consensus 102 ~~a~~~~~~~~~~~l~~~--g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFPNT--QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNY 178 (327)
T ss_dssp --CHHHHHHHHHHHCTTS--CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHH
T ss_pred HHHHHhhHHHHHHHHHhc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccc
Confidence 888888889999999988 899999 8999999999999999999999999999997 8999999999999999998
Q ss_pred -HHHHHHHHhccc--cccCCCChhhHHHHHHH----cCChHHHHHHHhcC-------------------chhhhhcccCC
Q 041247 154 -GQMVLLLHKQTK--NSLTDDDCIELLVQLIE----TGFYVVALQLLRDR-------------------PRLATKRAENE 207 (507)
Q Consensus 154 -~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~~-------------------~~~~~~~d~~g 207 (507)
.++++.|++.+. .+..|.+|.||||.|+. .|+.++++.|++.. +.+++.+|..|
T Consensus 179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g 258 (327)
T 1sw6_A 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258 (327)
T ss_dssp HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence 788888888873 78899999999999999 89999999999873 34455566666
Q ss_pred chHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCc
Q 041247 208 ETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGN 287 (507)
Q Consensus 208 ~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~ 287 (507)
+||||.|+. +++|+++.. + ..+.+| +||||+|+++|+
T Consensus 259 ~t~L~~a~~----------------------------------~~~Ll~~~~---n----~~d~~G--~TpLh~A~~~g~ 295 (327)
T 1sw6_A 259 KDSILENLD----------------------------------LKWIIANML---N----AQDSNG--DTCLNIAARLGN 295 (327)
T ss_dssp -CHHHHHCS----------------------------------HHHHHHHTT---T----CCCTTS--CCHHHHHHHHCC
T ss_pred CChhHHHHH----------------------------------HHHHHHhCC---C----CCCCCC--CCHHHHHHHcCC
Confidence 666666542 233443321 1 122333 666666666666
Q ss_pred HHHHHHHHHHCcccccccccCCCchHHHHHHh
Q 041247 288 VLFLLILIREYADLMRKCDENGYTIFHVAVLN 319 (507)
Q Consensus 288 ~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~ 319 (507)
.++|++|+++|+++ +.+|..|+||||+|+++
T Consensus 296 ~~~v~~Ll~~Gad~-~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 296 ISIVDALLDYGADP-FIANKSGLRPVDFGAGL 326 (327)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCGGGGTCC-
T ss_pred HHHHHHHHHcCCCC-cccCCCCCCHHHHHHhc
Confidence 66666666666665 66666666666666544
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=4.8e-34 Score=263.79 Aligned_cols=189 Identities=21% Similarity=0.184 Sum_probs=174.6
Q ss_pred CcccHHHHHHHcCCChhhHHHHhC-CCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhcc-----ccccCCCCCcHH
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSN-GGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEI-----GQEITNLGNTAL 76 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i-----~~~~~~~g~t~L 76 (507)
.|+||||+|+..|+.+++++|+++ |.+++..|..|+||||+|+..|+.+++++|++.. .++ +.+ |..|+|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~-~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSE-LYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCCST-TTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-chhcccccccc-CCCCcCHH
Confidence 489999999999999999999998 8888999999999999999999999999999864 443 444 77899999
Q ss_pred HHHHHcCCHHHHHHHHHcCCchhhccccc-------------CCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCh
Q 041247 77 HVAAQANCIDFVKELLKMMSTEDLAKKNK-------------IGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTL 143 (507)
Q Consensus 77 h~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~-------------~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 143 (507)
|+|+..|+.+++++|+++ +++++.++. .|+||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus 80 ~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t 156 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLAR--GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNT 156 (232)
T ss_dssp HHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred HHHHHcCCHHHHHHHHhC--CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCC
Confidence 999999999999999999 788887765 7999999999999999999999999997 899999999
Q ss_pred HHHHHHHcCcHHHH----HHHHhccc-c------ccCCCChhhHHHHHHHcCChHHHHHHHhcC
Q 041247 144 PIVRAAALEQGQMV----LLLHKQTK-N------SLTDDDCIELLVQLIETGFYVVALQLLRDR 196 (507)
Q Consensus 144 pL~~A~~~g~~~~v----~~Ll~~~~-~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 196 (507)
|||+|+..|+.+++ ++|++.++ . +..|..|.||||.|++.|+.+++++|+++.
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 99999999999988 99999998 4 578999999999999999999999999984
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.9e-33 Score=259.81 Aligned_cols=195 Identities=19% Similarity=0.150 Sum_probs=177.4
Q ss_pred cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhh-----cccccCCCcH
Q 041247 36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDL-----AKKNKIGCTA 110 (507)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~-----~~~d~~g~t~ 110 (507)
.|+||||.|+..|+.+++++|++..+.+++.+ |..|+||||+|+..|+.+++++|+++ +.++ +.+|..|+||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEA--APELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--CGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CchhccccccccCCCCcCH
Confidence 48899999999999999999998878999998 99999999999999999999999999 6665 6778899999
Q ss_pred HHHHHHcCcHHHHHHHHhcCCCCCccCCC-------------CCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhH
Q 041247 111 FFYAAASGMVEIVEEMMKGNKDIAMVPDM-------------DGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIEL 176 (507)
Q Consensus 111 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-------------~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~ 176 (507)
||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.++ .+.+|.+|.||
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 99999999999999999999997 55544 79999999999999999999999999 88899999999
Q ss_pred HHHHHHcCChHHH----HHHHhcCchhh-----hhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHH
Q 041247 177 LVQLIETGFYVVA----LQLLRDRPRLA-----TKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQA 247 (507)
Q Consensus 177 L~~A~~~~~~~~v----~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (507)
||.|+..++.+++ +.|++...... +.+|..|+||||+|+..|+
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~---------------------------- 209 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN---------------------------- 209 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC----------------------------
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC----------------------------
Confidence 9999999999988 88888744322 5789999999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 041247 248 LELVESLWTEVVLSSE 263 (507)
Q Consensus 248 ~~~v~~Ll~~~~~~~~ 263 (507)
.+++++|++++. ...
T Consensus 210 ~~~v~~Ll~~g~-~~~ 224 (232)
T 2rfa_A 210 IVMFQHLMQKRK-HIA 224 (232)
T ss_dssp HHHHHHHHHHHH-HC-
T ss_pred HHHHHHHHhcCc-cch
Confidence 999999999997 443
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=8.1e-35 Score=269.76 Aligned_cols=215 Identities=17% Similarity=0.097 Sum_probs=186.4
Q ss_pred CCcccHHHHHHHcCCChhhHHHHhCCC----CCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLSNGG----ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALH 77 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh 77 (507)
.+|.||||+|+..|+.+++++|++.+. +.+..|..|.||||+|+..|+.+++++|++ .+.+++.+ |..|+||||
T Consensus 6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~ 83 (236)
T 1ikn_D 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-DFRGNTPLH 83 (236)
T ss_dssp -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-CTTCCCHHH
T ss_pred CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHH
Confidence 478999999999999999999999876 467788999999999999999999998876 57888888 999999999
Q ss_pred HHHHcCCHHHHHHHHHcCC----chhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCC-CCChHHHHHHHcC
Q 041247 78 VAAQANCIDFVKELLKMMS----TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDM-DGTLPIVRAAALE 152 (507)
Q Consensus 78 ~Aa~~g~~e~v~~Ll~~~~----~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~g 152 (507)
+|+..|+.+++++|++.+. ...++..|..|.||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcC
Confidence 9999999999999999841 1226788999999999999999999999999999997 77776 9999999999999
Q ss_pred cHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhh-hhcccCCchHHHHHHhcCC
Q 041247 153 QGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLA-TKRAENEETALHVLARKDL 219 (507)
Q Consensus 153 ~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~d~~g~t~Lh~A~~~~~ 219 (507)
+.+++++|++.|+ .+..|..|.||||.|+..|+.+++++|++...... ..++..|.||.+.+.....
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~ 231 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTE 231 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-----
T ss_pred CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccccc
Confidence 9999999999999 88999999999999999999999999999854322 3678889998877655443
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=5.3e-33 Score=250.72 Aligned_cols=190 Identities=19% Similarity=0.233 Sum_probs=177.8
Q ss_pred CCcccHHHHHHHcCCChhhHHHHhCCC-CCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLSNGG-ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA 80 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa 80 (507)
+.+.||||.|+..|+.+.++.|++++. +++..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~l~~A~ 80 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQ-NSISDSPYLYAG 80 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH
Confidence 357799999999999999999999987 7778899999999999999999999988865 8888888 999999999999
Q ss_pred HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcC-CCCCccCCCCCChHHHHHHHcCc-----H
Q 041247 81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN-KDIAMVPDMDGTLPIVRAAALEQ-----G 154 (507)
Q Consensus 81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~g~-----~ 154 (507)
..|+.+++++|++.. +.+++..|..|.||||+|+..|+.+++++|++++ .++ +.+|..|.||||+|+..++ .
T Consensus 81 ~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 81 AQGRTEILAYMLKHA-TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp HTTCHHHHHHHHHHS-CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred HcCCHHHHHHHHhcc-CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHH
Confidence 999999999999765 7899999999999999999999999999999999 665 8999999999999999987 9
Q ss_pred HHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247 155 QMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD 195 (507)
Q Consensus 155 ~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 195 (507)
+++++|++.++ .+.+|.+|.||||.|++.|+.+++++|++.
T Consensus 159 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 99999999999 888999999999999999999999999975
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.3e-34 Score=266.71 Aligned_cols=214 Identities=18% Similarity=0.157 Sum_probs=179.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCC--chhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHH
Q 041247 69 TNLGNTALHVAAQANCIDFVKELLKMMS--TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIV 146 (507)
Q Consensus 69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~--~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 146 (507)
|.+|+||||+|+..|+.+++++|++... +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 83 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH 83 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHH
Confidence 7889999999999999999999988741 2368888999999999999999999999999999886 788889999999
Q ss_pred HHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccc
Q 041247 147 RAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQN 225 (507)
Q Consensus 147 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ 225 (507)
+|+..|+.+++++|++.+. ... +...+..|..|.||||+|+..|+
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~~------ 129 (236)
T 1ikn_D 84 LACEQGCLASVGVLTQSCTTPHL----------------------------HSILKATNYNGHTCLHLASIHGY------ 129 (236)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTSS----------------------------SCGGGCCCTTCCCHHHHHHHTTC------
T ss_pred HHHHcCCHHHHHHHHhcccchhH----------------------------HHHhhccCCCCCCHHHHHHHcCC------
Confidence 9999999999999988775 211 22345678889999999999999
Q ss_pred ccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccccc
Q 041247 226 RRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKC 305 (507)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~ 305 (507)
.+++++|+++++ +++. .+. ..|+||||+|+..|+.+++++|+++|+++ +.+
T Consensus 130 ----------------------~~~v~~Ll~~g~-~~~~----~~~-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~ 180 (236)
T 1ikn_D 130 ----------------------LGIVELLVSLGA-DVNA----QEP-CNGRTALHLAVDLQNPDLVSLLLKCGADV-NRV 180 (236)
T ss_dssp ----------------------HHHHHHHHHHTC-CTTC----CCT-TTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCC
T ss_pred ----------------------HHHHHHHHHcCC-CCCC----CCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-Ccc
Confidence 999999999988 7765 222 13499999999999999999999999998 899
Q ss_pred ccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247 306 DENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM 348 (507)
Q Consensus 306 d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t 348 (507)
|..|+||||+|+.+++.+++++|+++|++.. ....+.+|+|
T Consensus 181 ~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~--~~~~~~~~~~ 221 (236)
T 1ikn_D 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENL--QMLPESEDEE 221 (236)
T ss_dssp CTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG--SSCCCCCTTT
T ss_pred cCCCCCHHHHHHccCchHHHHHHHHcchhhh--hcCCccchHH
Confidence 9999999999999999999999999999763 2467777877
No 45
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.9e-33 Score=242.70 Aligned_cols=160 Identities=30% Similarity=0.332 Sum_probs=149.0
Q ss_pred CCCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHH
Q 041247 1 MDNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA 80 (507)
Q Consensus 1 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa 80 (507)
|.+--++|+.||+.|+.++|++|+++|++++.+|..|+||||+|+..|+.++++.+++. +.+++.+ |.+|+||||+|+
T Consensus 1 ~sdlg~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~-d~~g~TpLh~A~ 78 (169)
T 4gpm_A 1 MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSDGRTPLHHAA 78 (169)
T ss_dssp -CHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHH
T ss_pred CCHHHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhh-ccCCCCHHHHHH
Confidence 44555789999999999999999999999999999999999999999999999988864 8899988 999999999999
Q ss_pred HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHH
Q 041247 81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLL 160 (507)
Q Consensus 81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 160 (507)
+.|+.+++++|+++ |++++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+++|+.+++++|
T Consensus 79 ~~g~~~~v~~Ll~~--gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~L 155 (169)
T 4gpm_A 79 ENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLL 155 (169)
T ss_dssp HTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999 8999999999999999999999999999999999997 89999999999999999999999999
Q ss_pred Hhccc
Q 041247 161 HKQTK 165 (507)
Q Consensus 161 l~~~~ 165 (507)
+++|+
T Consensus 156 l~~GA 160 (169)
T 4gpm_A 156 EKQGG 160 (169)
T ss_dssp HTC--
T ss_pred HHCCC
Confidence 99997
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=5.2e-33 Score=260.89 Aligned_cols=190 Identities=18% Similarity=0.136 Sum_probs=172.5
Q ss_pred cccHHHHHHHcCCChhh----HHHHhCCCCCCC----ccccCCHHhHHHHHc---CCHHHHHHHHhhchhccccc-----
Q 041247 4 ILSGLGWVMTNGIKEAP----RVLLSNGGANLS----EDSLRRLKLYRAALN---GDWAVAKDIYDKYKVEIGQE----- 67 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~----~~~~g~t~Lh~Aa~~---g~~~~v~~ll~~~~~~i~~~----- 67 (507)
|.||||+|+..|+.+.+ ++|+++|.+++. .|..|+||||+|+.. |+.+++++|++. +.+++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~ 80 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVN 80 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcc
Confidence 78999999999999854 666778998888 899999999999999 999999988875 5554422
Q ss_pred -----cCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccC-------------CCcHHHHHHHcCcHHHHHHHHh-
Q 041247 68 -----ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKI-------------GCTAFFYAAASGMVEIVEEMMK- 128 (507)
Q Consensus 68 -----~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~-------------g~t~Lh~A~~~g~~~iv~~Ll~- 128 (507)
.|..|+||||+|+..|+.+++++|+++ +++++.+|.. |.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 146799999999999999999999999 8999998876 9999999999999999999999
Q ss_pred --cCCCCCccCCCCCChHHHHHHH--cCcHH-------HHHHHHhccc-c-------ccCCCChhhHHHHHHHcCChHHH
Q 041247 129 --GNKDIAMVPDMDGTLPIVRAAA--LEQGQ-------MVLLLHKQTK-N-------SLTDDDCIELLVQLIETGFYVVA 189 (507)
Q Consensus 129 --~~~~~~~~~~~~g~tpL~~A~~--~g~~~-------~v~~Ll~~~~-~-------~~~~~~g~t~L~~A~~~~~~~~v 189 (507)
.|+++ +.+|..|.||||+|+. .++.+ ++++|++.|+ . +.+|.+|.||||+|++.|+.+++
T Consensus 159 ~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v 237 (256)
T 2etb_A 159 PHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237 (256)
T ss_dssp SSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred cccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHH
Confidence 89997 8999999999999999 78888 9999999998 6 88999999999999999999999
Q ss_pred HHHHhcCc
Q 041247 190 LQLLRDRP 197 (507)
Q Consensus 190 ~~Ll~~~~ 197 (507)
++|+++.+
T Consensus 238 ~~Ll~~g~ 245 (256)
T 2etb_A 238 RHILQREF 245 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHhCCC
Confidence 99999843
No 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-34 Score=281.00 Aligned_cols=255 Identities=13% Similarity=0.009 Sum_probs=203.6
Q ss_pred cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcc-------------
Q 041247 36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAK------------- 102 (507)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~------------- 102 (507)
...+|+| ....+++++|++ .+++++.. |..|.|++| |+.++|+.|+++ +.+.+.
T Consensus 22 ~~~~~~~----~~~~dlv~~ll~-~ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~~~ 88 (327)
T 1sw6_A 22 RTAGPII----TFTHDLTSDFLS-SPLKIMKA-LPSPVVNDN-----EQKMKLEAFLQR--LLFPEIQEMPTSLNNDSSN 88 (327)
T ss_dssp ---CCEE----ECCTTCCCSTTT-SSCCCEEC-BCCCCCCCH-----HHHHHHHHHHHH--HHC----------------
T ss_pred ccccchh----hhcCchHHHHhh-CCcccccC-CCCCCcccC-----chhHHHHHHHHh--ccCCccccchHhhhccccc
Confidence 3444555 456677887775 58999998 999999988 999999999999 666544
Q ss_pred ----cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcc-CCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhH
Q 041247 103 ----KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMV-PDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIEL 176 (507)
Q Consensus 103 ----~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~ 176 (507)
+.....+.+|.|+..+..+++++|++.|+++ +. +|..|.||||+|+..|+.+++++|++.|+ ++.+|.+|.||
T Consensus 89 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~Tp 167 (327)
T 1sw6_A 89 RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC 167 (327)
T ss_dssp ---------------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCH
T ss_pred ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 1112223458888888899999999999998 77 89999999999999999999999999999 88999999999
Q ss_pred HHHHHHcCC---hHHHHHHHhcCchhhhhcccCCchHHHHHHh----cCCccccccccccccccccchhhhhhhhHHHHH
Q 041247 177 LVQLIETGF---YVVALQLLRDRPRLATKRAENEETALHVLAR----KDLTSTNQNRRGTFFQRCFNLGAEKEENKQALE 249 (507)
Q Consensus 177 L~~A~~~~~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (507)
||.|+..|+ .++++.|++.....++.+|..|+||||+|+. .|+ .+
T Consensus 168 Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~----------------------------~~ 219 (327)
T 1sw6_A 168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC----------------------------SA 219 (327)
T ss_dssp HHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC----------------------------HH
T ss_pred HHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc----------------------------HH
Confidence 999999998 7888899988667788999999999999999 788 89
Q ss_pred HHHHHHHHHhhcc----------------chhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchH
Q 041247 250 LVESLWTEVVLSS----------------ESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIF 313 (507)
Q Consensus 250 ~v~~Ll~~~~~~~----------------~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L 313 (507)
++++|++.+. .. .. +....+..|.||||.|+. +++|+++ ++ +.+|..|+|||
T Consensus 220 ~v~~Ll~~~~-~~~~~~~~~~i~~~~~~~g~--~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~-n~~d~~G~TpL 287 (327)
T 1sw6_A 220 AAKYYLDILM-GWIVKKQNRPIQSGTNEKES--KPNDKNGERKDSILENLD------LKWIIAN--ML-NAQDSNGDTCL 287 (327)
T ss_dssp HHHHHHHHHH-HHHHHGGGCCEEEC------------------CHHHHHCS------HHHHHHH--TT-TCCCTTSCCHH
T ss_pred HHHHHHHHHH-HHHhcccchHHHhhhhcccC--CcccccccCCChhHHHHH------HHHHHHh--CC-CCCCCCCCCHH
Confidence 9999998753 21 11 112233445999999996 8999998 44 88999999999
Q ss_pred HHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247 314 HVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM 348 (507)
Q Consensus 314 ~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t 348 (507)
|+|+++|+.+++++|+++|+++ +.+|.+|+|
T Consensus 288 h~A~~~g~~~~v~~Ll~~Gad~----~~~d~~G~T 318 (327)
T 1sw6_A 288 NIAARLGNISIVDALLDYGADP----FIANKSGLR 318 (327)
T ss_dssp HHHHHHCCHHHHHHHHHTTCCT----TCCCTTSCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCC----cccCCCCCC
Confidence 9999999999999999999998 889999999
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.9e-32 Score=247.03 Aligned_cols=198 Identities=19% Similarity=0.124 Sum_probs=146.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA 148 (507)
Q Consensus 69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 148 (507)
+..+.||||.|+..|+.+.++.|++.. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A 79 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA 79 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 456788888888888888888888875 5578888888888888888888888888888888886 77888888888888
Q ss_pred HHcCcHHHHHHHHhccc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccc
Q 041247 149 AALEQGQMVLLLHKQTK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNR 226 (507)
Q Consensus 149 ~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~ 226 (507)
+..|+.+++++|++.+. .+..+..|.||||.|+..|+.+++++|++..+.+++.+|..|+||||+|+..++
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~------- 152 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE------- 152 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC-------
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc-------
Confidence 88888888888885443 444555555555555555555555555555434444445455555554444443
Q ss_pred cccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccc
Q 041247 227 RGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCD 306 (507)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d 306 (507)
.. .++.+++++|+++|+++ +.+|
T Consensus 153 ----------------------------------~~----------------------~~~~~~v~~Ll~~ga~~-~~~~ 175 (201)
T 3hra_A 153 ----------------------------------GN----------------------QLYQDIVKLLMENGADQ-SIKD 175 (201)
T ss_dssp ----------------------------------CS----------------------HHHHHHHHHHHHTTCCT-TCCC
T ss_pred ----------------------------------ch----------------------hhHHHHHHHHHHCCCCC-CccC
Confidence 00 01278999999999998 8899
Q ss_pred cCCCchHHHHHHhCchHHHHHHHhch
Q 041247 307 ENGYTIFHVAVLNRLEELFKFIYDAK 332 (507)
Q Consensus 307 ~~g~t~L~~A~~~~~~~iv~~Ll~~g 332 (507)
..|+||||+|+++++.+++++|+++|
T Consensus 176 ~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 176 NSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999876
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.2e-32 Score=260.99 Aligned_cols=205 Identities=16% Similarity=0.113 Sum_probs=171.0
Q ss_pred CCcccHHHHHHHcCCChhhHHHHh----CCCCCC----CccccCCHHhHHHHHc---CCHHHHHHHHhhchhc-------
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLS----NGGANL----SEDSLRRLKLYRAALN---GDWAVAKDIYDKYKVE------- 63 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~~~~g~t~Lh~Aa~~---g~~~~v~~ll~~~~~~------- 63 (507)
.+|.||||+|++.|+.++|+.|++ .+.+.+ ..|..|+||||+|+.. |+.+++++|++. +++
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~ 89 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQF 89 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHH
Confidence 368899999999999999999987 454444 3478999999999987 999999999876 333
Q ss_pred ccc----ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhccccc--------------CCCcHHHHHHHcCcHHHHHH
Q 041247 64 IGQ----EITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNK--------------IGCTAFFYAAASGMVEIVEE 125 (507)
Q Consensus 64 i~~----~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~--------------~g~t~Lh~A~~~g~~~iv~~ 125 (507)
++. + |..|+||||+|+..|+.+++++|+++ +++++.+|. .|.||||+|+..|+.+++++
T Consensus 90 i~~~~~~~-d~~g~tpL~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 90 VNASYTDS-YYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HTCCCCST-TTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred hhcccccc-cCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 332 3 66899999999999999999999999 899999887 79999999999999999999
Q ss_pred HHh---cCCCCCccCCCCCChHHHHHHHcCc---------HHHHHHHHhccc-cc-------cCCCChhhHHHHHHHcCC
Q 041247 126 MMK---GNKDIAMVPDMDGTLPIVRAAALEQ---------GQMVLLLHKQTK-NS-------LTDDDCIELLVQLIETGF 185 (507)
Q Consensus 126 Ll~---~~~~~~~~~~~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~-~~-------~~~~~g~t~L~~A~~~~~ 185 (507)
|++ .|+++ +.+|..|.||||+|+..|+ .+++++|++.++ .+ ..|.+|.||||+|++.|+
T Consensus 167 Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 167 LLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245 (273)
T ss_dssp HHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence 999 89997 8999999999999999988 799999999998 53 589999999999999999
Q ss_pred hHHHHHHHhcCchhhhhcccCCchHH
Q 041247 186 YVVALQLLRDRPRLATKRAENEETAL 211 (507)
Q Consensus 186 ~~~v~~Ll~~~~~~~~~~d~~g~t~L 211 (507)
.+++++|+++...++......+.+|-
T Consensus 246 ~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 246 IGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 99999999995446666666666654
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.2e-32 Score=256.68 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=171.4
Q ss_pred cCCHHhHHHHHcCCHHHHHHHHh---hchhcccc----ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhcc---
Q 041247 36 LRRLKLYRAALNGDWAVAKDIYD---KYKVEIGQ----EITNLGNTALHVAAQA---NCIDFVKELLKMMSTEDLAK--- 102 (507)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~ll~---~~~~~i~~----~~~~~g~t~Lh~Aa~~---g~~e~v~~Ll~~~~~~~~~~--- 102 (507)
.|+||||.|+..|+.+.++.+++ +.+.+++. + |..|+||||+|+.. |+.+++++|++. +++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~-d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~~ 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-GSTGKTCLMKAVLNLQDGVNACIMPLLQI--DKDSGNPKP 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSB-TTTTBCHHHHHHHTCBTTBCTTHHHHHHH--HHHTTCSSC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccC-CCCCCCHHHHHHHccccchHHHHHHHHhc--CCcccchhh
Confidence 37899999999999985543333 45788887 6 99999999999999 999999999999 777653
Q ss_pred --------cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCC-------------CChHHHHHHHcCcHHHHHHHH
Q 041247 103 --------KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMD-------------GTLPIVRAAALEQGQMVLLLH 161 (507)
Q Consensus 103 --------~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~~v~~Ll 161 (507)
+|..|+||||+|+..|+.+++++|+++|+++ +.++.. |.||||+|+..|+.+++++|+
T Consensus 78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 156 (256)
T 2etb_A 78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156 (256)
T ss_dssp GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 3478999999999999999999999999997 777775 999999999999999999999
Q ss_pred h---ccc-cccCCCChhhHHHHHHH--cCChH-------HHHHHHhcCchhh-------hhcccCCchHHHHHHhcCCcc
Q 041247 162 K---QTK-NSLTDDDCIELLVQLIE--TGFYV-------VALQLLRDRPRLA-------TKRAENEETALHVLARKDLTS 221 (507)
Q Consensus 162 ~---~~~-~~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~~~~~~-------~~~d~~g~t~Lh~A~~~~~~~ 221 (507)
+ .++ .+.+|.+|.||||.|+. .++.+ +++.|++. +.++ +.+|..|+||||+|+..|+
T Consensus 157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~-- 233 (256)
T 2etb_A 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGK-- 233 (256)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHHTTC--
T ss_pred hccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHHhCC--
Confidence 9 788 88899999999999999 78888 99999998 6666 8899999999999999999
Q ss_pred ccccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247 222 TNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVV 259 (507)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~ 259 (507)
.+++++|++++.
T Consensus 234 --------------------------~~~v~~Ll~~g~ 245 (256)
T 2etb_A 234 --------------------------IEIFRHILQREF 245 (256)
T ss_dssp --------------------------HHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHhCCC
Confidence 999999999987
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.98 E-value=2.7e-32 Score=258.61 Aligned_cols=202 Identities=17% Similarity=0.131 Sum_probs=171.5
Q ss_pred CCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhh---chhcccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCC
Q 041247 26 NGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDK---YKVEIGQ---EITNLGNTALHVAAQA---NCIDFVKELLKMMS 96 (507)
Q Consensus 26 ~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~---~~~~i~~---~~~~~g~t~Lh~Aa~~---g~~e~v~~Ll~~~~ 96 (507)
.++.....|..|.||||.|+..|+.++++.|++. .+.+++. ..|..|+||||+|+.. |+.+++++|+++
T Consensus 2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-- 79 (273)
T 2pnn_A 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-- 79 (273)
T ss_dssp ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH--
T ss_pred CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh--
Confidence 3455667789999999999999999999988873 3444431 2378999999999987 999999999998
Q ss_pred chh-------hcc----cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCC--------------CCChHHHHHHHc
Q 041247 97 TED-------LAK----KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDM--------------DGTLPIVRAAAL 151 (507)
Q Consensus 97 ~~~-------~~~----~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~--------------~g~tpL~~A~~~ 151 (507)
+++ ++. .|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..
T Consensus 80 ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 158 (273)
T 2pnn_A 80 ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACT 158 (273)
T ss_dssp HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred hccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHc
Confidence 665 333 6779999999999999999999999999997 77776 799999999999
Q ss_pred CcHHHHHHHHh---ccc-cccCCCChhhHHHHHHHcCC---------hHHHHHHHhcCchhhh-------hcccCCchHH
Q 041247 152 EQGQMVLLLHK---QTK-NSLTDDDCIELLVQLIETGF---------YVVALQLLRDRPRLAT-------KRAENEETAL 211 (507)
Q Consensus 152 g~~~~v~~Ll~---~~~-~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~-------~~d~~g~t~L 211 (507)
|+.+++++|++ .++ .+.+|.+|+||||.|++.|+ .++++.|++. +.+++ .+|..|+|||
T Consensus 159 g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL 237 (273)
T 2pnn_A 159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPL 237 (273)
T ss_dssp TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHH
T ss_pred CCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHH
Confidence 99999999999 788 88899999999999999998 7999999998 55554 5899999999
Q ss_pred HHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247 212 HVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVV 259 (507)
Q Consensus 212 h~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~ 259 (507)
|+|+..|+ .+++++|+++++
T Consensus 238 ~~A~~~g~----------------------------~~iv~~Ll~~ga 257 (273)
T 2pnn_A 238 ALAASSGK----------------------------IGVLAYILQREI 257 (273)
T ss_dssp HHHHHTTC----------------------------HHHHHHHHHHHT
T ss_pred HHHHHhCh----------------------------HHHHHHHHHCCC
Confidence 99999999 999999999997
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=8.5e-32 Score=253.19 Aligned_cols=190 Identities=21% Similarity=0.197 Sum_probs=169.3
Q ss_pred cccHHHHHHHcCCChhhHHHHh----CCCCCCCcc----ccCCHHhHHHH---HcCCHHHHHHHHhhchhc---------
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLS----NGGANLSED----SLRRLKLYRAA---LNGDWAVAKDIYDKYKVE--------- 63 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~----~~g~t~Lh~Aa---~~g~~~~v~~ll~~~~~~--------- 63 (507)
|.|+||.|++.|+.+.++.|++ +|.+.+..+ ..|.||||+|+ ..|+.+++++|++. +.+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~ 83 (260)
T 3jxi_A 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFIN 83 (260)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHT
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhc
Confidence 6799999999999997666665 888887665 67999999999 77999999999876 322
Q ss_pred --cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccc--------------cCCCcHHHHHHHcCcHHHHHHHH
Q 041247 64 --IGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKN--------------KIGCTAFFYAAASGMVEIVEEMM 127 (507)
Q Consensus 64 --i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~iv~~Ll 127 (507)
++.. |..|+||||+|+..|+.++|++|+++ +++++.+| ..|+||||+|+..|+.+++++|+
T Consensus 84 ~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 84 SPFRDV-YYRGQTALHIAIERRCKHYVELLVEK--GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp CCBCCS-SEESBCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred cccccc-ccCCCCHHHHHHHcCCHHHHHHHHhC--CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 2333 55899999999999999999999999 89999988 68999999999999999999999
Q ss_pred h---cCCCCCccCCCCCChHHHHHHHcCc---------HHHHHHHHhccc-c-------ccCCCChhhHHHHHHHcCChH
Q 041247 128 K---GNKDIAMVPDMDGTLPIVRAAALEQ---------GQMVLLLHKQTK-N-------SLTDDDCIELLVQLIETGFYV 187 (507)
Q Consensus 128 ~---~~~~~~~~~~~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~-~-------~~~~~~g~t~L~~A~~~~~~~ 187 (507)
+ .|+++ +.+|..|.||||+|+..|+ .+++++|++.|+ . +..|.+|.||||+|++.|+.+
T Consensus 161 ~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 239 (260)
T 3jxi_A 161 ENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG 239 (260)
T ss_dssp HCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred hccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence 9 89997 8999999999999998887 799999999998 5 679999999999999999999
Q ss_pred HHHHHHhcCch
Q 041247 188 VALQLLRDRPR 198 (507)
Q Consensus 188 ~v~~Ll~~~~~ 198 (507)
++++|+++.+.
T Consensus 240 ~v~~Ll~~g~~ 250 (260)
T 3jxi_A 240 IFQHIIRREIA 250 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhCCC
Confidence 99999999443
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=9.7e-31 Score=228.16 Aligned_cols=156 Identities=27% Similarity=0.293 Sum_probs=146.8
Q ss_pred HHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC
Q 041247 39 LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG 118 (507)
Q Consensus 39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g 118 (507)
++|+.||+.|+.++|+.||+. +++++.+ |.+|+||||+|+..++.+++++|++. +++++.+|..|+||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN-GADVNAS-DSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHHHcC
Confidence 479999999999999998875 8999998 99999999999999999999999999 8999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCc
Q 041247 119 MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRP 197 (507)
Q Consensus 119 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 197 (507)
+.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.++ .+.+|.+|+||||+|++.|+.+++++|+++ +
T Consensus 82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-G 159 (169)
T 4gpm_A 82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-G 159 (169)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC-C
Confidence 999999999999997 8999999999999999999999999999999 889999999999999999999999999988 4
Q ss_pred hhh
Q 041247 198 RLA 200 (507)
Q Consensus 198 ~~~ 200 (507)
.++
T Consensus 160 A~i 162 (169)
T 4gpm_A 160 GWL 162 (169)
T ss_dssp ---
T ss_pred CCc
Confidence 443
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=3.1e-31 Score=249.31 Aligned_cols=194 Identities=19% Similarity=0.159 Sum_probs=170.8
Q ss_pred cccCCHHhHHHHHcCCHHHHHHHHh---hchhccccc---cCCCCCcHHHHHH---HcCCHHHHHHHHHcCCchh-----
Q 041247 34 DSLRRLKLYRAALNGDWAVAKDIYD---KYKVEIGQE---ITNLGNTALHVAA---QANCIDFVKELLKMMSTED----- 99 (507)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~---~~~~~i~~~---~~~~g~t~Lh~Aa---~~g~~e~v~~Ll~~~~~~~----- 99 (507)
+..++++||.|++.|+.+.++.+++ +.+.+++.+ .|..|+||||+|+ +.|+.+++++|++. +++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI--AEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH--HHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh--cccccchH
Confidence 4568899999999999997776666 356677655 1377999999999 77999999999998 544
Q ss_pred ------hcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCC--------------CCCChHHHHHHHcCcHHHHHH
Q 041247 100 ------LAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD--------------MDGTLPIVRAAALEQGQMVLL 159 (507)
Q Consensus 100 ------~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~~v~~ 159 (507)
.+..|..|+||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 3445668999999999999999999999999997 7777 689999999999999999999
Q ss_pred HHh---ccc-cccCCCChhhHHHHHHHcCC---------hHHHHHHHhcCchhh-------hhcccCCchHHHHHHhcCC
Q 041247 160 LHK---QTK-NSLTDDDCIELLVQLIETGF---------YVVALQLLRDRPRLA-------TKRAENEETALHVLARKDL 219 (507)
Q Consensus 160 Ll~---~~~-~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~d~~g~t~Lh~A~~~~~ 219 (507)
|++ .++ .+.+|.+|.||||.|+..++ .++++.|++. +.++ +.+|.+|+||||+|+..|+
T Consensus 159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 999 777 88899999999999999887 6999999998 5655 6799999999999999999
Q ss_pred ccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247 220 TSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVV 259 (507)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~ 259 (507)
.+++++|++++.
T Consensus 238 ----------------------------~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 238 ----------------------------IGIFQHIIRREI 249 (260)
T ss_dssp ----------------------------HHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHhCC
Confidence 999999999997
No 55
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=9.5e-33 Score=271.29 Aligned_cols=292 Identities=12% Similarity=0.056 Sum_probs=188.7
Q ss_pred ccHHHHHHH-cCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhcc-ccccCCCCCcHHHHHHHc
Q 041247 5 LSGLGWVMT-NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEI-GQEITNLGNTALHVAAQA 82 (507)
Q Consensus 5 ~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i-~~~~~~~g~t~Lh~Aa~~ 82 (507)
.+++++|.. .++.+.+++++++|. ++.||||.|+..|+.+++++|++...... ....+..|+||||+|++.
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~-------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~ 138 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGI-------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTC-------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCC-------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence 467788776 588999999998874 34599999999999999998887632111 011245678999999999
Q ss_pred CCHHHHHHHHHcCCch-----hhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcc--CCCCCChHHHHHH-HcCcH
Q 041247 83 NCIDFVKELLKMMSTE-----DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMV--PDMDGTLPIVRAA-ALEQG 154 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~-----~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~--~~~~g~tpL~~A~-~~g~~ 154 (507)
|+.++|++|+++ ++ +++..+ .||||+|+..|+.+++++|+++|+++ +. .|..|.||||+|+ .+|+.
T Consensus 139 G~~eiv~~Ll~~--gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~ 212 (376)
T 2aja_A 139 GHLHVLNRLCEL--APTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHH 212 (376)
T ss_dssp TCHHHHHHHHHS--CTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCH
T ss_pred CCHHHHHHHHhC--CCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCH
Confidence 999999999999 54 344333 89999999999999999999999996 55 7888999999999 99999
Q ss_pred HHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccc
Q 041247 155 QMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRC 234 (507)
Q Consensus 155 ~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~ 234 (507)
+++++|++.++ .|.||||.|+++|+.+++++|++. +...+.+| ++++.|+..|+.++..... ... +
T Consensus 213 eiv~~Ll~~ga------~~~taL~~Aa~~g~~evv~lL~~~-ga~~~~~~----~~l~~A~~~g~~~vv~~~~--~~~-~ 278 (376)
T 2aja_A 213 NVINFLLDCPV------MLAYAEIHEFEYGEKYVNPFIARH-VNRLKEMH----DAFKLSNPDGVFDLVTKSE--CLQ-G 278 (376)
T ss_dssp HHHHHHTTSHH------HHHHHHHCTTTTTTTTHHHHHHHH-HHHHHHHH----TTTTTTSSSSCCCCSSHHH--HHH-H
T ss_pred HHHHHHHhCCC------ccchHHHHHHHCCCHHHHHHHHhc-Cccccccc----HHHHHHHHCCChhhhcHHh--hhh-h
Confidence 99999999764 489999999999999999999988 55554443 4788899999855421000 000 0
Q ss_pred cchhhh--hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCch
Q 041247 235 FNLGAE--KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTI 312 (507)
Q Consensus 235 ~~~~~~--~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~ 312 (507)
...... ........+.+++|++... +..........+.++||||+|++.|+.+++++|++.+ ..+|..|+|+
T Consensus 279 ~~~~~~li~~~~~~~~~~~~~Ll~~~~--vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~ 352 (376)
T 2aja_A 279 FYMLRNLIRRNDEVLLDDIRFLLSIPG--IKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----SVLALTKANN 352 (376)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHHTSTT--TGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC---
T ss_pred HHHHHHHHHcchhhHHHHHHHHHhChh--hhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhc
Confidence 000000 0111112444555543211 0000000011122367777777777777777777643 4456777777
Q ss_pred HHHHHHhCchHHHHHHH
Q 041247 313 FHVAVLNRLEELFKFIY 329 (507)
Q Consensus 313 L~~A~~~~~~~iv~~Ll 329 (507)
+.+|-..|+.++.++-.
T Consensus 353 ~~~~~~~~~~~~~~~~~ 369 (376)
T 2aja_A 353 YYINETGGRLDLRAVAL 369 (376)
T ss_dssp -----------------
T ss_pred cccccccccccHHHHHH
Confidence 77777777777766544
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=3.7e-30 Score=226.05 Aligned_cols=167 Identities=17% Similarity=0.131 Sum_probs=107.4
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCC-CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGA-NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
+.||||.|+..|+.+.+++|++++.. .+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHIL-AKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-CTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhh-cccCCCHHHHHHHC
Confidence 34677777777777777777766655 345566667777777777777777766644 5566665 66667777777777
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (172)
T 3v30_A 80 GYTDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIEN 156 (172)
T ss_dssp TCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence 777777777766 5666666667777777777777777777777776665 6666667777777777777777777776
Q ss_pred ccc-cccCCCChhh
Q 041247 163 QTK-NSLTDDDCIE 175 (507)
Q Consensus 163 ~~~-~~~~~~~g~t 175 (507)
+++ ....+..+.|
T Consensus 157 ~~~~~~~~~~~~~~ 170 (172)
T 3v30_A 157 HILKLFQSNLVPAD 170 (172)
T ss_dssp HHHHHSCC------
T ss_pred HHHHHhcccCCCCC
Confidence 665 4444444444
No 57
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=3e-30 Score=224.21 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=146.6
Q ss_pred CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ 81 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~ 81 (507)
++..||||.|+..|+.+++++|+++|.+.+..|..|+||||.|+. |+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~ 79 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLK-DRTGFAVIHDAAR 79 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHH
Confidence 456799999999999999999999999999999999999999999 999999988875 7888888 8999999999999
Q ss_pred cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247 82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH 161 (507)
Q Consensus 82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 161 (507)
.|+.+++++|+++ +.+++.+|..|+||||+|+..|+.+++++|++++++..+.+|..|.||||+|+..|+.+++++|+
T Consensus 80 ~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 80 AGFLDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp HTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 9999999999998 89999999999999999999999999999999999855889999999999999999999999999
Q ss_pred hccc
Q 041247 162 KQTK 165 (507)
Q Consensus 162 ~~~~ 165 (507)
++|+
T Consensus 158 ~~GA 161 (162)
T 1ihb_A 158 ANGA 161 (162)
T ss_dssp HTC-
T ss_pred HhCC
Confidence 9875
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=5e-30 Score=229.54 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=121.3
Q ss_pred CccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHH
Q 041247 32 SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF 111 (507)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~L 111 (507)
.+|..|+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|.|||
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPL 105 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence 4566777777777777777777777764 5666666 77777777777777777777777777 677777777777777
Q ss_pred HHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHH
Q 041247 112 FYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVAL 190 (507)
Q Consensus 112 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~ 190 (507)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..|..|.||+|.|+..|+.++++
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~ 184 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence 7777777777777777777775 6777777777777777777777777777777 6677777777777777777777777
Q ss_pred HHHhc
Q 041247 191 QLLRD 195 (507)
Q Consensus 191 ~Ll~~ 195 (507)
+|++.
T Consensus 185 ~Ll~~ 189 (192)
T 2rfm_A 185 IFTEV 189 (192)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.3e-29 Score=222.56 Aligned_cols=169 Identities=18% Similarity=0.134 Sum_probs=151.8
Q ss_pred CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247 37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA 116 (507)
Q Consensus 37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~ 116 (507)
+.+|||.|+..|+.+++++++++.+..++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|+||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHHH
Confidence 4679999999999999999999877768887 99999999999999999999999999 89999999999999999999
Q ss_pred cCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247 117 SGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD 195 (507)
Q Consensus 117 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 195 (507)
.|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..|.+|.||||.|+..|+.+++++|+++
T Consensus 79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999999997 8899999999999999999999999999999 888999999999999999999999999998
Q ss_pred CchhhhhcccCCchH
Q 041247 196 RPRLATKRAENEETA 210 (507)
Q Consensus 196 ~~~~~~~~d~~g~t~ 210 (507)
......++..|.||
T Consensus 158 -~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 -ILKLFQSNLVPADP 171 (172)
T ss_dssp -HHHHSCC-------
T ss_pred -HHHHhcccCCCCCC
Confidence 55566777777776
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1.4e-29 Score=221.78 Aligned_cols=156 Identities=24% Similarity=0.292 Sum_probs=132.1
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN 83 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g 83 (507)
+.|+|++|++.|+.+++++|+++|.+.+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAV-DHAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTT
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcC
Confidence 45788888888888888888888888888888888888888888888888877764 6777777 888888888888888
Q ss_pred CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 041247 84 CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163 (507)
Q Consensus 84 ~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 163 (507)
+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..|+.+++++|++.
T Consensus 92 ~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 92 HLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 88888888888 7888888888888888888888888888888888886 77888888888888888888888888876
Q ss_pred c
Q 041247 164 T 164 (507)
Q Consensus 164 ~ 164 (507)
|
T Consensus 169 G 169 (169)
T 2y1l_E 169 N 169 (169)
T ss_dssp -
T ss_pred C
Confidence 4
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=9.1e-30 Score=222.41 Aligned_cols=158 Identities=18% Similarity=0.122 Sum_probs=140.1
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
+|.||||.|+..|+.+++++|++.|.+.+..|..|.||||+|+..|+.+++++|++. +.+++.. |..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLL-GKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHc
Confidence 578999999999999999999999888888888999999999999999999988865 7778877 88889999999999
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..|+.+++++|++
T Consensus 80 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 80 GYTDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp TCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHC--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 999999999988 7888888999999999999999999999999999886 7888889999999999999999999988
Q ss_pred ccc
Q 041247 163 QTK 165 (507)
Q Consensus 163 ~~~ 165 (507)
++.
T Consensus 157 ~~~ 159 (167)
T 3v31_A 157 HLL 159 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 62
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=247.10 Aligned_cols=189 Identities=20% Similarity=0.210 Sum_probs=163.7
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCC--CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHH-
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGA--NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA- 80 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa- 80 (507)
+.+++|.|+..|+.+.++.+++.+.+ .+..|..|+||||+|+..|+.+++++|++....+++.. |..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NRAGYSPIMLTAL 154 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHGGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CCCCCCHHHHHHH
Confidence 34778888899999999888877655 56778889999999999999999998887754478877 888999999999
Q ss_pred ----HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHH
Q 041247 81 ----QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQM 156 (507)
Q Consensus 81 ----~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 156 (507)
..++.+++++|++. +.+.+..|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.++
T Consensus 155 ~~~~~~~~~~~v~~Ll~~--g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRL--GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp CCCCSHHHHHHHHHHHHH--SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHhhhhhhHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHH
Confidence 66788999999998 7888888888999999999999999999999999986 8889999999999999999999
Q ss_pred HHHHHh-ccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcC
Q 041247 157 VLLLHK-QTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDR 196 (507)
Q Consensus 157 v~~Ll~-~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 196 (507)
+++|++ .++ .+.+|.+|.||||.|++.|+.+++++|+++.
T Consensus 232 v~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 232 AGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999998 677 7888899999999999999999999998873
No 63
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=1.4e-31 Score=263.02 Aligned_cols=262 Identities=15% Similarity=0.027 Sum_probs=194.9
Q ss_pred HcCCChhhHHHHhCCCCCCCccccCCHHhHHHHH-cCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 041247 13 TNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAAL-NGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKEL 91 (507)
Q Consensus 13 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~-~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~L 91 (507)
..+..+.+..++++..+. .+..+.++++.|.. .++.+.+++++.+ +.+++||||+|++.|+.++|++|
T Consensus 43 ~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~a~~~~~~~~~~~~l~~~---------g~~~~T~Lh~Aa~~G~~e~v~~L 111 (376)
T 2aja_A 43 TLSYKEAIHIFLPGTKNM--EQVRQLLCLYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGCSSALDTL 111 (376)
T ss_dssp HSCHHHHHHHCCCCSSHH--HHHHHHHHHHHHHTTTTCTTHHHHHHHH---------TCCHHHHHHHHHHHCCHHHHHHH
T ss_pred hccHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCCCHHHHHHHHHc---------CCCcCCHHHHHHHcCCHHHHHHH
Confidence 345556666666554222 12235677888877 5788888877754 34567999999999999999999
Q ss_pred HHcCCchh---hcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCC--CccCCCCCChHHHHHHHcCcHHHHHHHHhccc-
Q 041247 92 LKMMSTED---LAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI--AMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK- 165 (507)
Q Consensus 92 l~~~~~~~---~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~- 165 (507)
+++ ++. .+..|..|.||||+|+..|+.+++++|+++|++. .+..+.+ .||||+|+.+|+.+++++|+++++
T Consensus 112 l~~--ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~ 188 (376)
T 2aja_A 112 CLL--LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT 188 (376)
T ss_dssp TTC----CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG
T ss_pred HHc--CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc
Confidence 998 441 2244556789999999999999999999999752 1222233 899999999999999999999998
Q ss_pred ccc--CCCChhhHHHHHH-HcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhh
Q 041247 166 NSL--TDDDCIELLVQLI-ETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKE 242 (507)
Q Consensus 166 ~~~--~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (507)
.+. .|.+|.||||.|+ .+|+.+++++|++. +. .|.||||.|+..|+
T Consensus 189 ~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~----------------------- 237 (376)
T 2aja_A 189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYGE----------------------- 237 (376)
T ss_dssp GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTT-----------------------
T ss_pred cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCCC-----------------------
Confidence 555 7888999999999 99999999999985 42 38999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHH---------------------------HHHHHH
Q 041247 243 ENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVL---------------------------FLLILI 295 (507)
Q Consensus 243 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~---------------------------iv~~Ll 295 (507)
.+++++|++++. +++.. .++++.|+.+|+.+ .+++|+
T Consensus 238 -----~evv~lL~~~ga-~~~~~----------~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll 301 (376)
T 2aja_A 238 -----KYVNPFIARHVN-RLKEM----------HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL 301 (376)
T ss_dssp -----TTHHHHHHHHHH-HHHHH----------HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHH
T ss_pred -----HHHHHHHHhcCc-ccccc----------cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHH
Confidence 899999999988 55431 23445555555444 444444
Q ss_pred HHCccc----ccccccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247 296 REYADL----MRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA 335 (507)
Q Consensus 296 ~~~~~~----~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~ 335 (507)
+.+..- .....+.+.||||+|+..|+.+++++|++.|...
T Consensus 302 ~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v~ 345 (376)
T 2aja_A 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVL 345 (376)
T ss_dssp TSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHHH
T ss_pred hChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHHH
Confidence 321100 0122346779999999999999999999987543
No 64
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=240.18 Aligned_cols=191 Identities=18% Similarity=0.170 Sum_probs=175.5
Q ss_pred cCCHHhHHHHHcCCHHHHHHHHhhch-hccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCch-hhcccccCCCcHHHH
Q 041247 36 LRRLKLYRAALNGDWAVAKDIYDKYK-VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE-DLAKKNKIGCTAFFY 113 (507)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~-~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~-~~~~~d~~g~t~Lh~ 113 (507)
...+++|.|+..|+.+.++.++.... ..++.+ |.+|+||||+|+..|+.+++++|++. +. +++..|..|.||||+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~ 151 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDS--GVCKVDKQNRAGYSPIML 151 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--SCCCTTCCCTTSCCHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCCCCCCCCCCHHHH
Confidence 45678899999999999998876532 236777 99999999999999999999999999 65 999999999999999
Q ss_pred HH-----HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChH
Q 041247 114 AA-----ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYV 187 (507)
Q Consensus 114 A~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~ 187 (507)
|+ ..++.+++++|++.|.+. ...+..|.||||+|+..|+.+++++|++.|+ .+..|.+|.||||.|+..|+.+
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~ 230 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE 230 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 99 678999999999999875 7889999999999999999999999999999 8899999999999999999999
Q ss_pred HHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHH
Q 041247 188 VALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEV 258 (507)
Q Consensus 188 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~ 258 (507)
++++|++..+.+++.+|.+|+||||+|+..|+ .+++++|+++.
T Consensus 231 iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~----------------------------~~iv~~Ll~~~ 273 (276)
T 4hbd_A 231 IAGLLLAVPSCDISLTDRDGSTALMVALDAGQ----------------------------SEIASMLYSRM 273 (276)
T ss_dssp HHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC----------------------------HHHHHHHHHHC
T ss_pred HHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC----------------------------HHHHHHHHhcc
Confidence 99999996688899999999999999999999 99999999865
No 65
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=4.8e-29 Score=214.45 Aligned_cols=152 Identities=22% Similarity=0.245 Sum_probs=134.9
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
++.|||+.|+..|+.+++++|+++|.+.. .+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR-TKVDRTPLHMAASE 77 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CTTCCCHHHHHHHH
T ss_pred CccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHc
Confidence 35789999999999999999999986554 578899999999999999999988864 7788887 88899999999999
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHH
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLL 160 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 160 (507)
|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus 78 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 78 GHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999988 7889999999999999999999999999999999986 88899999999999999999998876
No 66
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1e-28 Score=220.98 Aligned_cols=165 Identities=16% Similarity=0.136 Sum_probs=155.8
Q ss_pred hccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCC
Q 041247 62 VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDG 141 (507)
Q Consensus 62 ~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g 141 (507)
..++.+ |..|+||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|
T Consensus 26 ~~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 101 (192)
T 2rfm_A 26 FLRNYR-DSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSG 101 (192)
T ss_dssp HHHTCC-CTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTS
T ss_pred HHHhCc-CCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCC
Confidence 345666 89999999999999999999999999 8999999999999999999999999999999999997 8899999
Q ss_pred ChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCc
Q 041247 142 TLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLT 220 (507)
Q Consensus 142 ~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 220 (507)
.||||+|+..|+.+++++|++.++ .+..|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..++
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~- 179 (192)
T 2rfm_A 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGR- 179 (192)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTC-
T ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCc-
Confidence 999999999999999999999999 888999999999999999999999999998 67788999999999999999999
Q ss_pred cccccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247 221 STNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVV 259 (507)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~ 259 (507)
.+++++|++.+.
T Consensus 180 ---------------------------~~~v~~Ll~~~~ 191 (192)
T 2rfm_A 180 ---------------------------QEVIKIFTEVRR 191 (192)
T ss_dssp ---------------------------HHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHhccC
Confidence 999999998763
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=9.9e-29 Score=215.79 Aligned_cols=158 Identities=19% Similarity=0.178 Sum_probs=149.9
Q ss_pred cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHH
Q 041247 36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAA 115 (507)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~ 115 (507)
.|.||||.|+..|+.++++++++. +.+++.+ |..|+||||+|+..|+.+++++|+++ +++++..|..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHH
Confidence 578999999999999999999976 6778888 99999999999999999999999999 8999999999999999999
Q ss_pred HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHh
Q 041247 116 ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLR 194 (507)
Q Consensus 116 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 194 (507)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||+|.|+..|+.+++++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999997 8899999999999999999999999999998 88899999999999999999999999998
Q ss_pred cCch
Q 041247 195 DRPR 198 (507)
Q Consensus 195 ~~~~ 198 (507)
+...
T Consensus 157 ~~~~ 160 (167)
T 3v31_A 157 HLLK 160 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8443
No 68
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=7.7e-29 Score=216.02 Aligned_cols=157 Identities=17% Similarity=0.107 Sum_probs=111.2
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCC-CCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGG-ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ 81 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~ 81 (507)
+|.||||.|++.|+.+++++|++.+. +....+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~ 84 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAK-DKGGLVPLHNACS 84 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHH
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCcc-CCCCCCHHHHHHH
Confidence 45677777777777777777777443 3334566677777777777777777766654 5666666 7777777777777
Q ss_pred cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247 82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH 161 (507)
Q Consensus 82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 161 (507)
.|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+. |+.+++++|+
T Consensus 85 ~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 85 YGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp TTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred cCcHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHh
Confidence 7777777777777 6777777777777777777777777777777777775 6777777777777655 6777777777
Q ss_pred hccc
Q 041247 162 KQTK 165 (507)
Q Consensus 162 ~~~~ 165 (507)
+.++
T Consensus 161 ~~gA 164 (165)
T 3twr_A 161 GDAA 164 (165)
T ss_dssp TC--
T ss_pred hccc
Confidence 6653
No 69
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.3e-30 Score=239.79 Aligned_cols=194 Identities=18% Similarity=0.138 Sum_probs=162.7
Q ss_pred hHHHHhCCCCCCCc---cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 041247 20 PRVLLSNGGANLSE---DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMS 96 (507)
Q Consensus 20 v~~Ll~~g~~~~~~---~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~ 96 (507)
++.|+++|++++.. +..+.||||.|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~-- 76 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGANYSIVDFLITA-- 76 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--
Confidence 46788998877644 56788899999999999999999975 7788888 99999999999999999999999999
Q ss_pred chhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCC-CCCChHHHHH--HHcCcHHHHHHHHhccc-cccCCCC
Q 041247 97 TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD-MDGTLPIVRA--AALEQGQMVLLLHKQTK-NSLTDDD 172 (507)
Q Consensus 97 ~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A--~~~g~~~~v~~Ll~~~~-~~~~~~~ 172 (507)
|++++.+|..|+||||+|+..|+.+++++|++.|+++ +.++ .+|.||||+| +..|+.+++++|++.++ .+..|..
T Consensus 77 ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~ 155 (229)
T 2vge_A 77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSG 155 (229)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCC
Confidence 8999999999999999999999999999999999998 5554 7999999999 99999999999999999 8888999
Q ss_pred hhhHHHHHHHcCChHHHHHHHhcCchh--hhhcccCCchHHHHHHhcCCccc
Q 041247 173 CIELLVQLIETGFYVVALQLLRDRPRL--ATKRAENEETALHVLARKDLTST 222 (507)
Q Consensus 173 g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~~~~~~ 222 (507)
+.++++.++..+.. +.|++. +.. ++.+|.+|+||||+|+..|+.++
T Consensus 156 ~~~~l~~~~~~~~~---~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~~~~ 203 (229)
T 2vge_A 156 AVYALWDYSAEFGD---ELSFRE-GESVTVLRRDGPEETDWWWAALHGQEGY 203 (229)
T ss_dssp EEEESSCBCCSSTT---BCCBCT-TCEEEEEESSCTTCSSEEEEEETTEEEE
T ss_pred chHHHHHHhhcccc---ccCccc-cccccccccCCCcccHHHHHHHcCCcce
Confidence 99999866555433 344544 444 56789999999999999999766
No 70
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=3e-28 Score=210.17 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=110.3
Q ss_pred cccHHHHHHHcCCChhhHHHHhC-CCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSN-GGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+ +..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQ-DTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHc
Confidence 45777777777777777777776 22555667777777777 777777777766654 6666666 77777777777777
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
|+.+++++|+++ |++++.+|..|+||||+|+..|+.+++++|++. +++ +.+|..|.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 79 GFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp TCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred CcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 777777777776 677777777777777777777777777777777 664 6677777777777777777777777765
Q ss_pred c
Q 041247 163 Q 163 (507)
Q Consensus 163 ~ 163 (507)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 3
No 71
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=6.5e-28 Score=211.06 Aligned_cols=157 Identities=27% Similarity=0.264 Sum_probs=147.9
Q ss_pred cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247 34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY 113 (507)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~ 113 (507)
...+.++||.|+..|+.+++++|++. +.+++.+ |..|.||||+|+..|+.+++++|+++ +++++..|..|+||||+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMAN-GADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRL 86 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHH
Confidence 55678999999999999999988875 7888888 99999999999999999999999999 89999999999999999
Q ss_pred HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHH
Q 041247 114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQL 192 (507)
Q Consensus 114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L 192 (507)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..|..|.||+|.|++.|+.+++++|
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 99999999999999999997 8899999999999999999999999999999 888999999999999999999999999
Q ss_pred Hhc
Q 041247 193 LRD 195 (507)
Q Consensus 193 l~~ 195 (507)
++.
T Consensus 166 ~~~ 168 (169)
T 2y1l_E 166 QKL 168 (169)
T ss_dssp HTC
T ss_pred HHc
Confidence 875
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2e-28 Score=216.55 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=134.4
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCC-CCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNG-GANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ 81 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~ 81 (507)
++.++||.|+..|+.+++++|++++ .+.+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVM-NRGDDTPLHLAAS 81 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHH
Confidence 4668888999999999998888884 44566788888899999998998888877765 7778877 8888899999998
Q ss_pred cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247 82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH 161 (507)
Q Consensus 82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 161 (507)
.|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..++.+++++|+
T Consensus 82 ~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 82 HGHRDIVQKLLQY--KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp TTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 8888999988888 7888888888889999998888888999998888886 788888889998888888888888888
Q ss_pred hccc-ccc
Q 041247 162 KQTK-NSL 168 (507)
Q Consensus 162 ~~~~-~~~ 168 (507)
+.++ .+.
T Consensus 159 ~~g~~~~~ 166 (179)
T 3f6q_A 159 KMGQNLNR 166 (179)
T ss_dssp HTTCCCSC
T ss_pred HhhcCccc
Confidence 8887 443
No 73
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=4.7e-28 Score=208.90 Aligned_cols=153 Identities=22% Similarity=0.242 Sum_probs=145.0
Q ss_pred CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247 37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA 116 (507)
Q Consensus 37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~ 116 (507)
+.||||.|+..|+.++++++++..+.+++.. |..|+||||+ +..|+.+++++|+++ |++++.+|..|+||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHH
Confidence 5689999999999999999998855678887 9999999999 999999999999999 89999999999999999999
Q ss_pred cCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247 117 SGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD 195 (507)
Q Consensus 117 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 195 (507)
.|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. . .+..|.+|.||||.|+..|+.+++++|+++
T Consensus 78 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999997 88999999999999999999999999999 6 888999999999999999999999999875
No 74
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=2.1e-28 Score=212.57 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=119.6
Q ss_pred cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHH
Q 041247 36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAA 115 (507)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~ 115 (507)
...||||.|+..|+.+++++|++ .+.+++.+ |..|+||||+|+. |+.+++++|+++ +.+++.+|..|.||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVIHDAA 78 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-CccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH
Confidence 45678888888888888887775 46677776 7778888888877 888888888887 6778888888888888888
Q ss_pred HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc--cccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247 116 ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK--NSLTDDDCIELLVQLIETGFYVVALQLL 193 (507)
Q Consensus 116 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 193 (507)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..|.||||.|+..|+.+++++|+
T Consensus 79 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 888888888888888776 7777888888888888888888888888777 3566777777777777777777777777
Q ss_pred hc
Q 041247 194 RD 195 (507)
Q Consensus 194 ~~ 195 (507)
++
T Consensus 158 ~~ 159 (162)
T 1ihb_A 158 AN 159 (162)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2.7e-28 Score=212.57 Aligned_cols=158 Identities=25% Similarity=0.212 Sum_probs=147.9
Q ss_pred ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHH
Q 041247 33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFF 112 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh 112 (507)
.|.++.|+||.|+..|+.++++++++..+.+++.. +..|+||||+|+..|+.+++++|+++ +.+++.+|..|+||||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCCCHHH
Confidence 36788999999999999999999998777777777 88899999999999999999999999 8999999999999999
Q ss_pred HHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHH
Q 041247 113 YAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQ 191 (507)
Q Consensus 113 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~ 191 (507)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+.+|.+|.||+|.|.+ ++.+++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence 999999999999999999997 8899999999999999999999999999999 88899999999999877 88999999
Q ss_pred HHhc
Q 041247 192 LLRD 195 (507)
Q Consensus 192 Ll~~ 195 (507)
|+++
T Consensus 159 L~~~ 162 (165)
T 3twr_A 159 LRGD 162 (165)
T ss_dssp HHTC
T ss_pred Hhhc
Confidence 9876
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=3.1e-28 Score=215.28 Aligned_cols=167 Identities=15% Similarity=0.101 Sum_probs=152.7
Q ss_pred ccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHH
Q 041247 35 SLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA 114 (507)
Q Consensus 35 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A 114 (507)
.++.++||.|+..|+.++++++++..+.+++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|+||||+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLA 79 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHHH
Confidence 457789999999999999999999888888888 99999999999999999999999999 899999999999999999
Q ss_pred HHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247 115 AASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLL 193 (507)
Q Consensus 115 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 193 (507)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..|.+|.||+|.|+..++.++++.|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 8899999999999999999999999999999 8899999999999999999999999999
Q ss_pred hcCchhhhhcccC
Q 041247 194 RDRPRLATKRAEN 206 (507)
Q Consensus 194 ~~~~~~~~~~d~~ 206 (507)
+. +..++..+.+
T Consensus 159 ~~-g~~~~~~~~~ 170 (179)
T 3f6q_A 159 KM-GQNLNRIPYK 170 (179)
T ss_dssp HT-TCCCSCBCCC
T ss_pred Hh-hcCcccCCcc
Confidence 88 4545444433
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.6e-27 Score=204.92 Aligned_cols=150 Identities=24% Similarity=0.219 Sum_probs=140.4
Q ss_pred CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247 37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA 116 (507)
Q Consensus 37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~ 116 (507)
..++||.|+..|+.+++++|++. +.+++ . +..|.||||+|+..|+.+++++|+++ +.+++.+|..|+||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-c-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHH
Confidence 46899999999999999999986 45554 3 78899999999999999999999998 89999999999999999999
Q ss_pred cCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHH
Q 041247 117 SGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQL 192 (507)
Q Consensus 117 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L 192 (507)
.|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+.+|.+|.||+|.|+..|+.+++++|
T Consensus 77 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 77 EGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999997 8899999999999999999999999999998 888999999999999999999999876
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=8.8e-29 Score=229.45 Aligned_cols=176 Identities=15% Similarity=0.116 Sum_probs=123.4
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
.|.||||.|++.|+.+.++.|+++|++++. +..|.||||.|+..|+.++++.|++. +.+++.+ |..|+||||+|+..
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLP-NDEGITALHNAVCA 80 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCC-CTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHc
Confidence 589999999999999999999999977764 47789999999999999999988865 6788888 99999999999999
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCC-hHHHHH--HHcCcHHHHHH
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGT-LPIVRA--AALEQGQMVLL 159 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A--~~~g~~~~v~~ 159 (507)
|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.++..|. ||||+| +..|+.+++++
T Consensus 81 g~~~~v~~Ll~~--ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 81 GHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp TCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred CCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 999999999999 8999999999999999999999999999999999997 77777766 999999 78899999999
Q ss_pred HHhccc-cccC---------CCChhhHHHHHHHcC
Q 041247 160 LHKQTK-NSLT---------DDDCIELLVQLIETG 184 (507)
Q Consensus 160 Ll~~~~-~~~~---------~~~g~t~L~~A~~~~ 184 (507)
|++.++ .+.. +..+.++.+++++.|
T Consensus 158 Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G 192 (239)
T 1ycs_B 158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEG 192 (239)
T ss_dssp HHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred HHHhhhcccccccceEEEEeccCCCCCCcccccCC
Confidence 999887 4433 334445555444444
No 79
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.7e-29 Score=230.03 Aligned_cols=186 Identities=19% Similarity=0.107 Sum_probs=129.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA 148 (507)
Q Consensus 69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 148 (507)
+..+.||||.|+..|+.+++++|++. +++++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A 94 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCA 94 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHH
Confidence 45567778888888888888888887 6788888888888888888888888888888888886 77788888888888
Q ss_pred HHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHH--HhcCCcccccc
Q 041247 149 AALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVL--ARKDLTSTNQN 225 (507)
Q Consensus 149 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~~~~ 225 (507)
+..|+.+++++|++.++ .+..+ +.+|+||||+| +..++
T Consensus 95 ~~~g~~~~v~~Ll~~ga~~~~~~---------------------------------~~~g~tpL~~A~a~~~~~------ 135 (229)
T 2vge_A 95 ASCNDTVICMALVQHGAAIFATT---------------------------------LSDGATAFEKCDPYREGY------ 135 (229)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCC---------------------------------SSTTCCTGGGCCTTSTTH------
T ss_pred HHcCCHHHHHHHHHcCCCccccc---------------------------------CCCCCCHHHHHHHHhcCh------
Confidence 88888888888887765 33332 23455555555 55554
Q ss_pred ccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccc-ccc
Q 041247 226 RRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADL-MRK 304 (507)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-~~~ 304 (507)
.+++++|+++++ +++. .+..+ .||++.++..+. .+.|++.|+++ ++.
T Consensus 136 ----------------------~~~v~~Ll~~ga-~~~~----~~~~~--~~~l~~~~~~~~---~~~ll~~ga~~~~~~ 183 (229)
T 2vge_A 136 ----------------------ADCATYLADVEQ-SMGL----MNSGA--VYALWDYSAEFG---DELSFREGESVTVLR 183 (229)
T ss_dssp ----------------------HHHHHHHHHHHH-HTTT----SGGGE--EEESSCBCCSST---TBCCBCTTCEEEEEE
T ss_pred ----------------------HHHHHHHHHcCC-Cccc----ccCCc--hHHHHHHhhccc---cccCccccccccccc
Confidence 555555555555 4443 12222 555554333322 24556677773 267
Q ss_pred cccCCCchHHHHHHhCchHHHHHH
Q 041247 305 CDENGYTIFHVAVLNRLEELFKFI 328 (507)
Q Consensus 305 ~d~~g~t~L~~A~~~~~~~iv~~L 328 (507)
+|..|+||||+|+++|+.++|+.+
T Consensus 184 ~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 184 RDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp SSCTTCSSEEEEEETTEEEEEEGG
T ss_pred cCCCcccHHHHHHHcCCcceeehh
Confidence 888899999999999998887643
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2.3e-27 Score=219.87 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=131.7
Q ss_pred cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247 34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY 113 (507)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~ 113 (507)
+..|.||||.|+..|+.+.++.+++. +.+++. +..|.||||.|+..|+.+++++|++. +++++.+|..|+||||+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHN 76 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhcc-CCCccc--CchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence 34689999999999999999988864 777764 57889999999999999999999999 78999999999999999
Q ss_pred HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChh-hHHHHH--HHcCChHHH
Q 041247 114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCI-ELLVQL--IETGFYVVA 189 (507)
Q Consensus 114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~-t~L~~A--~~~~~~~~v 189 (507)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|. ||+|.| +..|+.+++
T Consensus 77 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 99999999999999999997 8999999999999999999999999999999 777777766 999999 888999999
Q ss_pred HHHHhcCchhhhhc---------ccCCchHHHHHHhcCC
Q 041247 190 LQLLRDRPRLATKR---------AENEETALHVLARKDL 219 (507)
Q Consensus 190 ~~Ll~~~~~~~~~~---------d~~g~t~Lh~A~~~~~ 219 (507)
++|++. +...+.. |..++++++++.+.|.
T Consensus 156 ~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 156 QFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 999998 4544443 6678888888888876
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=2.9e-26 Score=203.20 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=122.0
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCCCCCcc-ccCCHHhHHHHHcCCH----HHHHHHHhhchhccccccCCCCCcHHHH
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSED-SLRRLKLYRAALNGDW----AVAKDIYDKYKVEIGQEITNLGNTALHV 78 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~Aa~~g~~----~~v~~ll~~~~~~i~~~~~~~g~t~Lh~ 78 (507)
++++|+.|++.|+.+.++.+++.+ .+..+ ..|+||||+|+..|+. +++++|++ .+++++.+ |..|+||||+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~-d~~g~TpLh~ 81 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSR-TKEGTTLFFP 81 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCC-CTTCCCTHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCC-CCCCCcHHHH
Confidence 467888888888888888888765 23333 6788888888888875 47776665 47888887 8888888888
Q ss_pred HHHcCC------HHHHHHHHHcCCchhhcccccCCC-cHHHHHHHcC-----cHHHHHHHHh-cCCCCCccCCCCCChHH
Q 041247 79 AAQANC------IDFVKELLKMMSTEDLAKKNKIGC-TAFFYAAASG-----MVEIVEEMMK-GNKDIAMVPDMDGTLPI 145 (507)
Q Consensus 79 Aa~~g~------~e~v~~Ll~~~~~~~~~~~d~~g~-t~Lh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~~~~g~tpL 145 (507)
|+..|+ .+++++|+++ |++++.+|..|+ ||||+|+..+ +.+++++|++ +|+++ +.+|..|.|||
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL 158 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEK--GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTAL 158 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHT--TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHH
T ss_pred HHHcCCcchhhHHHHHHHHHHC--CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHH
Confidence 888876 5778888888 788888888888 8888888743 4568888888 88886 78888888888
Q ss_pred HHHHHcCcHHHHHHHHhccc
Q 041247 146 VRAAALEQGQMVLLLHKQTK 165 (507)
Q Consensus 146 ~~A~~~g~~~~v~~Ll~~~~ 165 (507)
|+|++.|+.+++++|.+...
T Consensus 159 ~~A~~~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDYIK 178 (186)
T ss_dssp HHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888887654
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=4.5e-26 Score=196.49 Aligned_cols=139 Identities=17% Similarity=0.081 Sum_probs=77.4
Q ss_pred CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCc-HHHHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT-ALHVAA 80 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t-~Lh~Aa 80 (507)
+.|.||||+|+..|+.+++++|+++|.+++..|..|+||||+|+ .|+.+++++|++. +.+++.+ |..|+| |||+|+
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~-d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCA-DPATLTRPVHDAA 86 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCC-CTTTCCCHHHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHH
Confidence 34556666666666666666666666666666666666666653 5666666655543 5555555 566666 666666
Q ss_pred HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHH
Q 041247 81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIV 146 (507)
Q Consensus 81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 146 (507)
..|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||.+
T Consensus 87 ~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~ 149 (156)
T 1bi7_B 87 REGFLDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAE 149 (156)
T ss_dssp HHTCHHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HCCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccc
Confidence 66666666666666 5666666666666666666666666666666666664 555666666554
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=1.7e-25 Score=188.03 Aligned_cols=132 Identities=15% Similarity=0.141 Sum_probs=103.5
Q ss_pred CCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccC-
Q 041247 28 GANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKI- 106 (507)
Q Consensus 28 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~- 106 (507)
++.+..+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+. |+.+++++|+++ +++++.+|..
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~ 77 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPAT 77 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCC
Confidence 34556677788888888888888888877754 6777776 7778888888888 888888888887 6778888877
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247 107 GCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK 165 (507)
Q Consensus 107 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 165 (507)
|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 788888888888888888888888776 7777788888888888888888888887664
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=1.8e-25 Score=187.96 Aligned_cols=126 Identities=19% Similarity=0.151 Sum_probs=119.7
Q ss_pred CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCC-CCcHHHHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNL-GNTALHVAA 80 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~-g~t~Lh~Aa 80 (507)
++|.||||+|+..|+.+++++|+++|.+++..|..|+||||+|+. |+.+++++|++. +.+++.+ |.. |+||||+|+
T Consensus 10 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~-~~~~g~t~L~~A~ 86 (136)
T 1d9s_A 10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCA-DPATLTRPVHDAA 86 (136)
T ss_dssp CCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCC-BTTTTBCHHHHHH
T ss_pred CCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCc-CCCCCCCHHHHHH
Confidence 468899999999999999999999999999999999999999999 999999988875 7889888 888 999999999
Q ss_pred HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 041247 81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKD 132 (507)
Q Consensus 81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~ 132 (507)
..|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 87 ~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 87 REGFLDTLVVLHRA--GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHTCHHHHHHHHHT--CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999 899999999999999999999999999999998875
No 85
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=1.5e-24 Score=179.37 Aligned_cols=126 Identities=29% Similarity=0.370 Sum_probs=81.5
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
+|.||||+|+..|+.+++++|+++|.+++..+..|.||||.|+..|+.+++++|++. +.+++.+ |..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCccc-CCCCCcHHHHHHHc
Confidence 466677777776766667766666666666666666666666666666666655543 5555555 66666666666666
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKD 132 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~ 132 (507)
|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 666666666666 566666666666666666666666666666666553
No 86
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=1.6e-25 Score=198.50 Aligned_cols=163 Identities=20% Similarity=0.109 Sum_probs=142.7
Q ss_pred HHHcCCChhhHHHHhCCCCCCC-----------ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHH
Q 041247 11 VMTNGIKEAPRVLLSNGGANLS-----------EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVA 79 (507)
Q Consensus 11 A~~~g~~~~v~~Ll~~g~~~~~-----------~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~A 79 (507)
|++.|..+.+++|++.+..... .+..|.||||.|+..|+.++++.|++ +.+++.+ |..|+||||+|
T Consensus 7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A 83 (183)
T 3deo_A 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFV 83 (183)
T ss_dssp EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHH
T ss_pred HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHH
Confidence 5567888889999866433322 25689999999999999999998887 7788888 99999999999
Q ss_pred HHcCCHHHHHHHHHcCCchhhcccc-cCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHH
Q 041247 80 AQANCIDFVKELLKMMSTEDLAKKN-KIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVL 158 (507)
Q Consensus 80 a~~g~~e~v~~Ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 158 (507)
+..|+.+++++|+++ +++++.+| ..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.++.
T Consensus 84 ~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~---- 156 (183)
T 3deo_A 84 AGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT---- 156 (183)
T ss_dssp HHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT----
T ss_pred HHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC----
Confidence 999999999999999 89999888 89999999999999999999999999997 89999999999999975443
Q ss_pred HHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247 159 LLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRD 195 (507)
Q Consensus 159 ~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 195 (507)
..+.++++.|+..|+.++++.|.++
T Consensus 157 ------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 ------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 2456899999999999999998765
No 87
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=2.5e-25 Score=197.15 Aligned_cols=154 Identities=14% Similarity=0.051 Sum_probs=137.5
Q ss_pred cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCchhhcccccCCCcHH
Q 041247 36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCI----DFVKELLKMMSTEDLAKKNKIGCTAF 111 (507)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~----e~v~~Ll~~~~~~~~~~~d~~g~t~L 111 (507)
.++++|+.|++.|+.+.++.++... ++...+..|+||||+|+..|+. +++++|+++ |++++.+|..|+|||
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL 79 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLF 79 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTH
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence 3567899999999999999888653 3444236799999999999985 599999999 899999999999999
Q ss_pred HHHHHcCc------HHHHHHHHhcCCCCCccCCCCCC-hHHHHHHHcC-----cHHHHHHHHh-ccc-cccCCCChhhHH
Q 041247 112 FYAAASGM------VEIVEEMMKGNKDIAMVPDMDGT-LPIVRAAALE-----QGQMVLLLHK-QTK-NSLTDDDCIELL 177 (507)
Q Consensus 112 h~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g-----~~~~v~~Ll~-~~~-~~~~~~~g~t~L 177 (507)
|+|+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+ +.+++++|++ .|+ .+.+|..|.|||
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence 99999886 68899999999997 89999999 9999999944 4679999999 888 999999999999
Q ss_pred HHHHHcCChHHHHHHHhc
Q 041247 178 VQLIETGFYVVALQLLRD 195 (507)
Q Consensus 178 ~~A~~~~~~~~v~~Ll~~ 195 (507)
|+|++.|+.++++.|.+.
T Consensus 159 ~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HHHHTTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999999876
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=2e-24 Score=181.50 Aligned_cols=127 Identities=24% Similarity=0.263 Sum_probs=103.0
Q ss_pred ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHH
Q 041247 33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFF 112 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh 112 (507)
....+.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|+||||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLH 85 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHH
Confidence 355677888888888888888877765 6777777 78888888888888888888888887 7888888888888888
Q ss_pred HHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcc
Q 041247 113 YAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT 164 (507)
Q Consensus 113 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 164 (507)
+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.|
T Consensus 86 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 888888888888888888886 778888888888888888888888888764
No 89
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=6.8e-25 Score=189.07 Aligned_cols=140 Identities=15% Similarity=0.132 Sum_probs=75.1
Q ss_pred ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCc-HH
Q 041247 33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT-AF 111 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t-~L 111 (507)
.+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+ .|+.+++++|+++ +++++.+|..|+| ||
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPV 82 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCCCCcHHH
Confidence 345556666666666666666655543 5555555 556666666653 5666666666665 5566666666665 66
Q ss_pred HHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHH
Q 041247 112 FYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLV 178 (507)
Q Consensus 112 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~ 178 (507)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+ .+..+..|.|+.+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred HHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 6666666666666666666664 5556666666666666666666666666655 5555555555544
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=3.2e-24 Score=180.30 Aligned_cols=123 Identities=24% Similarity=0.336 Sum_probs=79.3
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN 83 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g 83 (507)
+.||||+|+..|+.+++++|+++|.+.+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAV-DAIGFTPLHLAAFIG 91 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcC
Confidence 45666666666666666666666666666666666666666666666666655543 5556655 666666666666666
Q ss_pred CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcC
Q 041247 84 CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130 (507)
Q Consensus 84 ~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~ 130 (507)
+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|++.|
T Consensus 92 ~~~~v~~Ll~~--g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLKH--GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHHc--CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 66666666666 5666666666666666666666666666666543
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=2.9e-25 Score=206.24 Aligned_cols=167 Identities=19% Similarity=0.067 Sum_probs=142.1
Q ss_pred cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN 83 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g 83 (507)
+.+++.+++..|+.+.++.+...+ ...+..|.||||.|+..|+.++++.|++ +.+++.+ |..|+||||+|+..|
T Consensus 15 ~~~~~l~~~~~g~~~~~~~~~~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g 88 (244)
T 3ui2_A 15 GAMEYLIEWKDGHSPSWVPSSYIA---ADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLG 88 (244)
T ss_dssp TEEEEEEEESSCCCCEEEEGGGSC---HHHHHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHT
T ss_pred CccHHHHHHHcCCCcccccccccc---cccccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCC
Confidence 345555555666666665554443 2234688999999999999999998887 7788888 999999999999999
Q ss_pred CHHHHHHHHHcCCchhhcccc-cCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 84 CIDFVKELLKMMSTEDLAKKN-KIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 84 ~~e~v~~Ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
+.++|++|+++ +++++.+| ..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++
T Consensus 89 ~~~~v~~Ll~~--ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~--------- 156 (244)
T 3ui2_A 89 SDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK--------- 156 (244)
T ss_dssp CHHHHHHHHHT--TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT---------
T ss_pred CHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh---------
Confidence 99999999999 89999888 88999999999999999999999999997 8899999999999986322
Q ss_pred ccccccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247 163 QTKNSLTDDDCIELLVQLIETGFYVVALQLLRD 195 (507)
Q Consensus 163 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 195 (507)
...+.+|||+|+..|+.++++.|++.
T Consensus 157 -------~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 157 -------TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp -------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 24578999999999999999999986
No 92
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=1.6e-23 Score=173.18 Aligned_cols=125 Identities=30% Similarity=0.386 Sum_probs=106.3
Q ss_pred cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHH
Q 041247 36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAA 115 (507)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~ 115 (507)
+|+||||.|+..|+.+++++|++. +.+++.. |..|.||||+|+..|+.+++++|+++ +.+++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHH
Confidence 478888888888888888888865 6677776 88888888888888888888888888 7888888888888888888
Q ss_pred HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247 116 ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK 165 (507)
Q Consensus 116 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 165 (507)
..|+.+++++|+++|+++ +.+|..|.|||++|+..|+.+++++|+++|+
T Consensus 77 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 888888888888888886 7788888888888888888888888888764
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=9.9e-24 Score=186.91 Aligned_cols=139 Identities=18% Similarity=0.093 Sum_probs=126.6
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
+|.||||+|+..|+.+++++|++ |.+++..|..|+||||+|+..|+.+++++|++. +.+++.+.+..|+||||+|+..
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHhc
Confidence 57899999999999999999999 889999999999999999999999999988865 7888888338899999999999
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
|+.+++++|+++ |++++.+|..|+||||+|+..++. ..+.+||++|+..|+.+++++|.+
T Consensus 121 ~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 121 VRPEVVEALVEL--GADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp TCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHc--CCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence 999999999999 899999999999999999875432 236799999999999999999987
Q ss_pred c
Q 041247 163 Q 163 (507)
Q Consensus 163 ~ 163 (507)
+
T Consensus 181 ~ 181 (183)
T 3deo_A 181 Q 181 (183)
T ss_dssp C
T ss_pred h
Confidence 5
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=4.3e-24 Score=179.74 Aligned_cols=128 Identities=18% Similarity=0.180 Sum_probs=101.4
Q ss_pred CccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHH
Q 041247 32 SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF 111 (507)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~L 111 (507)
.+|..|+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHH
Confidence 5677888888888888888888877764 6777776 78888888888888888888888887 788888888888888
Q ss_pred HHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcc
Q 041247 112 FYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT 164 (507)
Q Consensus 112 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 164 (507)
|+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..+..+++++|.+.+
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 8888888888888888888886 778888888888888877777777666544
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=1.4e-23 Score=194.82 Aligned_cols=141 Identities=18% Similarity=0.084 Sum_probs=128.1
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
+|.||||+|+..|+.+++++|++ |.+++..|..|+||||+|+..|+.+++++|++. +.+++.+.+..|+||||+|+..
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHc
Confidence 57899999999999999999999 889999999999999999999999999988865 8889888338899999999999
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 162 (507)
|+.+++++|+++ |++++.+|..|+||||+|+..++ ...+.|||++|+..|+.+++++|.+
T Consensus 122 g~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 122 VRPEVVEALVEL--GADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp TCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence 999999999999 89999999999999999986321 2457899999999999999999998
Q ss_pred ccc
Q 041247 163 QTK 165 (507)
Q Consensus 163 ~~~ 165 (507)
...
T Consensus 182 ~~~ 184 (244)
T 3ui2_A 182 QVF 184 (244)
T ss_dssp HHE
T ss_pred hcc
Confidence 754
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=1.3e-23 Score=176.76 Aligned_cols=126 Identities=21% Similarity=0.168 Sum_probs=114.9
Q ss_pred CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247 2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ 81 (507)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~ 81 (507)
.+|.||||+|+..|+.+++++|+++|.+++..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~ 85 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTT-GYQNDSPLHDAAK 85 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CGGGCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCc-CCCCCCHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999988864 8888888 9999999999999
Q ss_pred cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCC
Q 041247 82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131 (507)
Q Consensus 82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~ 131 (507)
.|+.+++++|+++ +++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus 86 ~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 86 NGHVDIVKLLLSY--GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp TTCHHHHHHHHHT--TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 9999999999999 89999999999999999999999999988876554
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=2.3e-23 Score=190.65 Aligned_cols=128 Identities=21% Similarity=0.232 Sum_probs=89.2
Q ss_pred cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247 34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY 113 (507)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~ 113 (507)
+..|.||||+|+..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|++.. +++++.+|..|+||||+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~-g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQP-NIELNQQNKLGDTALHA 146 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTST-TCCCCCCCTTSCCHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCC-CCCccccCCCCCCHHHH
Confidence 55677777777777777777766653 5666666 777777777777777777777777764 56777777777777777
Q ss_pred HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247 114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK 165 (507)
Q Consensus 114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 165 (507)
|+..|+.+++++|+++|+++ +.+|..|.|||++|+..|+.++++.|++.++
T Consensus 147 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred HHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 77777777777777777775 6777777777777777777777777777766
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=5.2e-23 Score=196.79 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=122.4
Q ss_pred cccCCHHhHHHHHcCCHHHHHHHHhhchhccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhccccc
Q 041247 34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE-----ITNLGNTALHVAAQA---NCIDFVKELLKMMSTEDLAKKNK 105 (507)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~-----~~~~g~t~Lh~Aa~~---g~~e~v~~Ll~~~~~~~~~~~d~ 105 (507)
.....++||.|+..|+.+.++.+++. +.+++.. .+..|+||||+|+.. |+.+++++|+++ +++++.+|.
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~ 224 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAA 224 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCT
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCC
Confidence 44466899999999999999988854 6777762 288899999999997 899999999999 899999999
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCC
Q 041247 106 IGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGF 185 (507)
Q Consensus 106 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~ 185 (507)
.|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.++. .|.||||+|++.|+
T Consensus 225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 225 DGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVI 298 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC-------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCC
Confidence 9999999999999999999999999997 89999999999999999999999999998863 57899999999886
Q ss_pred h
Q 041247 186 Y 186 (507)
Q Consensus 186 ~ 186 (507)
.
T Consensus 299 ~ 299 (301)
T 2b0o_E 299 S 299 (301)
T ss_dssp -
T ss_pred c
Confidence 4
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=1e-22 Score=167.80 Aligned_cols=114 Identities=23% Similarity=0.254 Sum_probs=77.6
Q ss_pred cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247 34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY 113 (507)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~ 113 (507)
+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|+||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHH
Confidence 34566777777777777777766653 5566665 66777777777777777777777766 66777777777777777
Q ss_pred HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcC
Q 041247 114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE 152 (507)
Q Consensus 114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 152 (507)
|+..|+.+++++|+++|+++ +.+|.+|.||||+|...+
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHH
Confidence 77777777777777777775 667777777777774333
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=1.2e-22 Score=167.43 Aligned_cols=116 Identities=21% Similarity=0.139 Sum_probs=106.4
Q ss_pred CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247 3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
.|.||||+|+..|+.+++++|+++|.+++..|..|+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAP-DKHHITPLLSAVYE 83 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCC-CTTSCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHc
Confidence 477999999999999999999999999999999999999999999999999988864 7889988 99999999999999
Q ss_pred CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHH
Q 041247 83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEI 122 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i 122 (507)
|+.+++++|+++ +++++.+|..|.||||+|...+..++
T Consensus 84 ~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 84 GHVSCVKLLLSK--GADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred CCHHHHHHHHHc--CCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 999999999999 89999999999999999955444443
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=1.5e-22 Score=185.23 Aligned_cols=133 Identities=18% Similarity=0.181 Sum_probs=112.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhc-CCCCCccCCCCCChHHHH
Q 041247 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG-NKDIAMVPDMDGTLPIVR 147 (507)
Q Consensus 69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~ 147 (507)
+..|+||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|++. ++++ +.+|..|.||||+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA 146 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence 67789999999999999999999998 899999999999999999999999999999998 8886 8899999999999
Q ss_pred HHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhccc
Q 041247 148 AAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAE 205 (507)
Q Consensus 148 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~ 205 (507)
|+..|+.+++++|++.++ .+.+|.+|.||||+|+..++.++++.+++. +.....++.
T Consensus 147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~ 204 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNA 204 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccch
Confidence 999999999999999998 888999999999999999999999999887 333333333
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=186.61 Aligned_cols=139 Identities=14% Similarity=0.037 Sum_probs=122.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCchhhcc------cccCCCcHHHHHHHc---CcHHHHHHHHhcCCCCCccCCCCC
Q 041247 71 LGNTALHVAAQANCIDFVKELLKMMSTEDLAK------KNKIGCTAFFYAAAS---GMVEIVEEMMKGNKDIAMVPDMDG 141 (507)
Q Consensus 71 ~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~------~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g 141 (507)
...++||.|+..|+.+.++.|++. +.+++. .|..|+||||+|+.. |+.+++++|+++|+++ +.+|.+|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G 226 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG 226 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred chHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence 345789999999999999999998 788887 689999999999997 8999999999999997 8899999
Q ss_pred ChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247 142 TLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL 219 (507)
Q Consensus 142 ~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 219 (507)
.||||+|+..|+.+++++|++.++ .+.+|.+|.||||+|+..++.+++++|++.. . ..|.||||+|+..|+
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a------~~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ-A------GTFAFPLHVDYSWVI 298 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-H------HTTSSCCC-------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-C------CCCCChhHHHHhcCC
Confidence 999999999999999999999999 8899999999999999999999999999873 2 268999999999886
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=6.5e-21 Score=180.13 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=91.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCchh------hcccccCCCcHHHHHHHc---CcHHHHHHHHhcCCCCCccCCCCCCh
Q 041247 73 NTALHVAAQANCIDFVKELLKMMSTED------LAKKNKIGCTAFFYAAAS---GMVEIVEEMMKGNKDIAMVPDMDGTL 143 (507)
Q Consensus 73 ~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~------~~~~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~t 143 (507)
.++|+.|+..|+.+.++.+++. +.+ ++..|..|+||||+|+.. |+.+++++|+++|+++ +.+|..|.|
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~T 207 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGST 207 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCC
T ss_pred hhhhhhHhhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCC
Confidence 4577778888888777777777 555 344467778888888877 7778888888887776 777777888
Q ss_pred HHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247 144 PIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD 195 (507)
Q Consensus 144 pL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 195 (507)
|||+|+..|+.+++++|++.|+ .+.+|.+|.||||.|+..|+.++++.|++.
T Consensus 208 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 260 (278)
T 1dcq_A 208 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 8888888888888888888777 777777788888888888888888777776
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=1.1e-20 Score=193.91 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=82.7
Q ss_pred HHhHHHHHcCCHHHHHHHHhhchhccccc-----cCCCCCcHHHHHHH---cCCHHHHHHHHHcCCchhhcccccCCCcH
Q 041247 39 LKLYRAALNGDWAVAKDIYDKYKVEIGQE-----ITNLGNTALHVAAQ---ANCIDFVKELLKMMSTEDLAKKNKIGCTA 110 (507)
Q Consensus 39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~-----~~~~g~t~Lh~Aa~---~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~ 110 (507)
+.||.|+..|+.+.++.|++. +.+++.+ .|..|+||||+|++ .|+.++|++|+++ |++++.+|..|+||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~--ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH--SCCTTCCCSSSCCH
T ss_pred HHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc--CCCCCccCCCCCcH
Confidence 567777777777777766654 4555432 14566777777754 6667777777776 66677777777777
Q ss_pred HHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247 111 FFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK 165 (507)
Q Consensus 111 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 165 (507)
||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.|+
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga 264 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQA 264 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 77777777777777777777765 6667777777777777777777777777666
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=1.9e-20 Score=145.84 Aligned_cols=92 Identities=32% Similarity=0.430 Sum_probs=67.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHH
Q 041247 71 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAA 150 (507)
Q Consensus 71 ~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 150 (507)
+|+||||+|+..|+.+++++|++. +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 367777777777777777777777 6777777777777777777777777777777777775 6777777777777777
Q ss_pred cCcHHHHHHHHhccc
Q 041247 151 LEQGQMVLLLHKQTK 165 (507)
Q Consensus 151 ~g~~~~v~~Ll~~~~ 165 (507)
.|+.+++++|++.|+
T Consensus 78 ~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 777777777777653
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=6.2e-20 Score=173.40 Aligned_cols=193 Identities=19% Similarity=0.132 Sum_probs=136.7
Q ss_pred cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc--cccCCCChhhHHHHH
Q 041247 103 KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK--NSLTDDDCIELLVQL 180 (507)
Q Consensus 103 ~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A 180 (507)
.|..+.++++.+...|+..+.+++...-+.-...+-..+.... .+...-..+++..... .........++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 4666777777777777776666654432221000111111111 1111111122222211 112223345788888
Q ss_pred HHcCChHHHHHHHhcCchh-----hhhcccCCchHHHHHHhc---CCccccccccccccccccchhhhhhhhHHHHHHHH
Q 041247 181 IETGFYVVALQLLRDRPRL-----ATKRAENEETALHVLARK---DLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVE 252 (507)
Q Consensus 181 ~~~~~~~~v~~Ll~~~~~~-----~~~~d~~g~t~Lh~A~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 252 (507)
+..|+.+.++.+++...+. .+..|..|+||||+|+.. ++ .++++
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~----------------------------~~~v~ 189 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS----------------------------LHIVD 189 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT----------------------------HHHHH
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccch----------------------------HHHHH
Confidence 8888888888888874432 334588999999999999 77 99999
Q ss_pred HHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhch
Q 041247 253 SLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAK 332 (507)
Q Consensus 253 ~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~g 332 (507)
+|+++++ +++. .+.. |+||||+|+.+|+.+++++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|
T Consensus 190 ~Ll~~ga-~in~----~d~~--g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 190 FLVQNSG-NLDK----QTGK--GSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp HHHHHCS-CTTC----CCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCC-Cccc----cCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999998 7775 3344 499999999999999999999999998 999999999999999999999999999999
Q ss_pred hhh
Q 041247 333 SIA 335 (507)
Q Consensus 333 a~~ 335 (507)
++.
T Consensus 262 a~~ 264 (278)
T 1dcq_A 262 SGR 264 (278)
T ss_dssp TTC
T ss_pred CCC
Confidence 864
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=2.2e-20 Score=182.59 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=67.8
Q ss_pred CCCcHHHHHHHc-CCHHHHHHHHHcCCchhhcccc--cCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHH
Q 041247 71 LGNTALHVAAQA-NCIDFVKELLKMMSTEDLAKKN--KIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVR 147 (507)
Q Consensus 71 ~g~t~Lh~Aa~~-g~~e~v~~Ll~~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 147 (507)
.+.|+||.|+.. |+.++++.|+++ +++++..| ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~ 274 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHH 274 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence 344555555555 555555555555 45555554 45555555555555555555555555554 4555555555555
Q ss_pred HHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCc--hhhhhcccCCchHHHHHHhc
Q 041247 148 AAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRP--RLATKRAENEETALHVLARK 217 (507)
Q Consensus 148 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~A~~~ 217 (507)
|+..|+.+++++|+++++ .+..|.+|.||||+|+..++.+++++|++... ......+..+.|+++++...
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 555555555555555555 55555555555555555555555555554411 11122344455666555443
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=1.7e-20 Score=183.33 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=115.5
Q ss_pred ccccCCHHhHHHHHc-CCHHHHHHHHhhchhccccccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCc
Q 041247 33 EDSLRRLKLYRAALN-GDWAVAKDIYDKYKVEIGQEIT--NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT 109 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~-g~~~~v~~ll~~~~~~i~~~~~--~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t 109 (507)
.+..+.|+||.|+.. |+.++++.|++ ++.+++.. + ..|.||||+|+..|+.+++++|+++ +++++.+|..|+|
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~T 270 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALA-HGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRG 270 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHH-cCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence 345677899999999 99999998886 47888877 6 7899999999999999999999999 8999999999999
Q ss_pred HHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc----cccCCCChhhHHHHHHHcC
Q 041247 110 AFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK----NSLTDDDCIELLVQLIETG 184 (507)
Q Consensus 110 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~A~~~~ 184 (507)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+. ....+..+.|+++.+....
T Consensus 271 pLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 271 PLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999999997 8899999999999999999999999998875 3345667788888776543
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=5.9e-20 Score=143.03 Aligned_cols=91 Identities=31% Similarity=0.433 Sum_probs=54.4
Q ss_pred CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247 37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA 116 (507)
Q Consensus 37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~ 116 (507)
|+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|+||||+|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAAR 77 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHH
Confidence 45556666666666655555543 4555555 55666666666666666666666665 56666666666666666666
Q ss_pred cCcHHHHHHHHhcCC
Q 041247 117 SGMVEIVEEMMKGNK 131 (507)
Q Consensus 117 ~g~~~iv~~Ll~~~~ 131 (507)
.|+.+++++|+++|+
T Consensus 78 ~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 666666666666554
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.7e-19 Score=184.99 Aligned_cols=121 Identities=14% Similarity=0.056 Sum_probs=80.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCchhhccc------ccCCCcHHHHHHH---cCcHHHHHHHHhcCCCCCccCCCCCC
Q 041247 72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKK------NKIGCTAFFYAAA---SGMVEIVEEMMKGNKDIAMVPDMDGT 142 (507)
Q Consensus 72 g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~------d~~g~t~Lh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~g~ 142 (507)
..+.||.|+..|+.+.|+.|++. |++++.+ |..|+||||+|+. .|+.+++++|+++|+++ +.+|.+|.
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~ 208 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 208 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSC
T ss_pred cHHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCC
Confidence 34566666666666666666666 5666555 5666666666644 66666666666666665 66666666
Q ss_pred hHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247 143 LPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD 195 (507)
Q Consensus 143 tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 195 (507)
||||+|+..|+.+++++|+++|+ .+..|.+|.||||+|+..|+.++++.|++.
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 262 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 262 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666666666666666 666666666666666666666666666665
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.1e-19 Score=147.55 Aligned_cols=104 Identities=28% Similarity=0.309 Sum_probs=56.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA 148 (507)
Q Consensus 69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 148 (507)
|.+|+||||+|+..|+.+++++|+++ +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA 82 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence 45555555555555555555555555 4555555555555555555555555555555555554 45555555555555
Q ss_pred HHcCcHHHHHHHHhccc-cccCCCChhh
Q 041247 149 AALEQGQMVLLLHKQTK-NSLTDDDCIE 175 (507)
Q Consensus 149 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t 175 (507)
+..|+.+++++|+++|+ .+..+..|.+
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~ 110 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSH 110 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC-
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCccccc
Confidence 55555555555555554 4444444433
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=1.9e-19 Score=146.10 Aligned_cols=107 Identities=26% Similarity=0.277 Sum_probs=77.1
Q ss_pred ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHH
Q 041247 33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFF 112 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh 112 (507)
+|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|+||||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEH 80 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHH
Confidence 466777777777777777777766654 5666666 77777777777777777777777777 6777777777777777
Q ss_pred HHHHcCcHHHHHHHHhcCCCCCccCCCCCChH
Q 041247 113 YAAASGMVEIVEEMMKGNKDIAMVPDMDGTLP 144 (507)
Q Consensus 113 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp 144 (507)
+|+..|+.+++++|+++|+++ +.++..|.+|
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~ 111 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADV-NARSWGSSHH 111 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred HHHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence 777777777777777777775 6667777665
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=1.1e-17 Score=134.56 Aligned_cols=89 Identities=25% Similarity=0.246 Sum_probs=70.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247 69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA 148 (507)
Q Consensus 69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 148 (507)
|.+|+||||+|+..|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS 97 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence 67778888888888888888888877 6777777888888888888888888888888888775 77777888888888
Q ss_pred HHcCcHHHHHHH
Q 041247 149 AALEQGQMVLLL 160 (507)
Q Consensus 149 ~~~g~~~~v~~L 160 (507)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 888888877765
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=7e-17 Score=129.76 Aligned_cols=91 Identities=26% Similarity=0.322 Sum_probs=82.0
Q ss_pred CccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHH
Q 041247 32 SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF 111 (507)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~L 111 (507)
..|.+|.|+||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|+|||
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl 94 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAF 94 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcHH
Confidence 4578899999999999999999988865 7888888 89999999999999999999999999 899999999999999
Q ss_pred HHHHHcCcHHHHHHH
Q 041247 112 FYAAASGMVEIVEEM 126 (507)
Q Consensus 112 h~A~~~g~~~iv~~L 126 (507)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999999999999987
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=84.23 E-value=7.3 Score=36.91 Aligned_cols=214 Identities=14% Similarity=0.074 Sum_probs=117.7
Q ss_pred cccHHHHHHHcCCChhhHHHHhC-CCCC--CCccccCCHHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHHHH
Q 041247 4 ILSGLGWVMTNGIKEAPRVLLSN-GGAN--LSEDSLRRLKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVA 79 (507)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~--~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh~A 79 (507)
|.|||..-.+.+... ++.++. .+.. ...|.+|.-.+......++.+..+.+.++- +..+.-..|..|+..+...
T Consensus 3 ~~~~l~e~~r~~~~~--~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQkl 80 (351)
T 3gvo_A 3 GRSRLLEDFRNNRFP--NLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKF 80 (351)
T ss_dssp CCCHHHHHHHTTCCT--TCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHH
T ss_pred CccHHHHHHhCCCCC--CcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHH
Confidence 567777776666432 222221 1111 134777888888888888887777666542 2222223488899888888
Q ss_pred HHcCCHHHHHHHHHcCCchhh-cccccCCCcHHHHHHHcCcHHHHHHHHhc-CCC-CCccCCCCCChHHHHHHHcCcHHH
Q 041247 80 AQANCIDFVKELLKMMSTEDL-AKKNKIGCTAFFYAAASGMVEIVEEMMKG-NKD-IAMVPDMDGTLPIVRAAALEQGQM 156 (507)
Q Consensus 80 a~~g~~e~v~~Ll~~~~~~~~-~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~-~~~~~~~~g~tpL~~A~~~g~~~~ 156 (507)
...+..+....+++...|.-+ -..|.+|.-.+..+......+-...+++. .+. ..-..|.+|...+......+..+.
T Consensus 81 le~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~ 160 (351)
T 3gvo_A 81 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQS 160 (351)
T ss_dssp HHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGG
T ss_pred HhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHH
Confidence 888888877777765322211 13466676666666665555444444432 111 112346666666666655555444
Q ss_pred HHHHHhccc----cccCCCChhhHHHHHHHcCChHHHHHHHhc--CchhhhhcccCCchHHHHHHhcCC
Q 041247 157 VLLLHKQTK----NSLTDDDCIELLVQLIETGFYVVALQLLRD--RPRLATKRAENEETALHVLARKDL 219 (507)
Q Consensus 157 v~~Ll~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~d~~g~t~Lh~A~~~~~ 219 (507)
.+.+++.-. .-..+..|...+..+.+....+-...+++. .....-..|..|+-.+......+.
T Consensus 161 ~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~ 229 (351)
T 3gvo_A 161 LQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR 229 (351)
T ss_dssp THHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCc
Confidence 444443322 222456666666666665554333333322 011122467777777777776665
No 116
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=70.83 E-value=20 Score=34.09 Aligned_cols=187 Identities=11% Similarity=0.045 Sum_probs=107.7
Q ss_pred ccccCCHHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhh-cccccCCCcH
Q 041247 33 EDSLRRLKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDL-AKKNKIGCTA 110 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~-~~~d~~g~t~ 110 (507)
.|.+|.-.+..+...++.+..+.+.++- +..+....|.+|+..+......+..+..+.+++...|.-. -..+.+|.-.
T Consensus 38 ~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rV 117 (369)
T 3k49_A 38 KDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRV 117 (369)
T ss_dssp TSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHH
T ss_pred cCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHH
Confidence 4677888888888888877776666542 2222222388898888888888888777777765322111 1235566666
Q ss_pred HHHHHHcCcHHHHHHHHhc-CCCC-CccCCCCCChHHHHHHHcCcHHHHHHHHhcc----ccccCCCChhhHHHHHHHcC
Q 041247 111 FFYAAASGMVEIVEEMMKG-NKDI-AMVPDMDGTLPIVRAAALEQGQMVLLLHKQT----KNSLTDDDCIELLVQLIETG 184 (507)
Q Consensus 111 Lh~A~~~g~~~iv~~Ll~~-~~~~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~----~~~~~~~~g~t~L~~A~~~~ 184 (507)
+..+......+-...+++. .+.+ .-..|.+|...+......+..+..+.+++.- ..-..+..|...+..+...+
T Consensus 118 lQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~ 197 (369)
T 3k49_A 118 IQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFG 197 (369)
T ss_dssp HHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhC
Confidence 6555555444433333332 1111 1234666666666655555433222222221 12235677888888888887
Q ss_pred ChHHHHHHHhcCch--hhhhcccCCchHHHHHHhcCC
Q 041247 185 FYVVALQLLRDRPR--LATKRAENEETALHVLARKDL 219 (507)
Q Consensus 185 ~~~~v~~Ll~~~~~--~~~~~d~~g~t~Lh~A~~~~~ 219 (507)
..+--+.+++.-.. ..-..|..|+-.+..+...+.
T Consensus 198 ~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~ 234 (369)
T 3k49_A 198 SSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQ 234 (369)
T ss_dssp CHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCT
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCC
Confidence 76655556554211 112467788877777777765
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=69.96 E-value=27 Score=32.88 Aligned_cols=212 Identities=9% Similarity=0.046 Sum_probs=111.8
Q ss_pred HHHHHHHcCCChhhHHHHhCCC---CCCCccccCCHHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHHHHHHc
Q 041247 7 GLGWVMTNGIKEAPRVLLSNGG---ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVAAQA 82 (507)
Q Consensus 7 ~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh~Aa~~ 82 (507)
.|......++.+..+.+++.-. .....|..|+..+......|+.+....+++.- +..+....+..|.-.+..+...
T Consensus 40 ~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~ 119 (351)
T 3gvo_A 40 FIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALES 119 (351)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHh
Confidence 3444455555554444333210 11235788888888888889888777666542 2222222367777777777777
Q ss_pred CCHHHHHHHHHcCCchh-hcccccCCCcHHHHHHHcCcHHHHHHHHhcCCC-C-CccCCCCCChHHHHHHHcCcH----H
Q 041247 83 NCIDFVKELLKMMSTED-LAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKD-I-AMVPDMDGTLPIVRAAALEQG----Q 155 (507)
Q Consensus 83 g~~e~v~~Ll~~~~~~~-~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~-~-~~~~~~~g~tpL~~A~~~g~~----~ 155 (507)
...+-...+++...+.- --..|.+|+..+......+..+..+.+++.-.. + .-..+..|...+..+...... .
T Consensus 120 ~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ 199 (351)
T 3gvo_A 120 ISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 199 (351)
T ss_dssp SCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHH
Confidence 77665555554321111 123566777666665554443333333322110 0 012344555555555544433 3
Q ss_pred HHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhh--hhcccCCchHHHHHHhcC
Q 041247 156 MVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLA--TKRAENEETALHVLARKD 218 (507)
Q Consensus 156 ~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~d~~g~t~Lh~A~~~~ 218 (507)
+++.|...-..-..|.+|.-.+..++..+..+..+.+++.-.... -..++.|...+.-+...+
T Consensus 200 ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~ 264 (351)
T 3gvo_A 200 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHA 264 (351)
T ss_dssp HHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhC
Confidence 444443322244578899988888888887776666665521111 123444444444444433
No 118
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=60.58 E-value=40 Score=31.30 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=37.9
Q ss_pred ccccCCHHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 041247 33 EDSLRRLKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVAAQANCIDFVKELLKM 94 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~ 94 (507)
.|..|.-.+......++.+..+.+.++- +....-..|..|+..+......+..+....+++.
T Consensus 20 ~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~ 82 (333)
T 3bwt_A 20 KDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKI 82 (333)
T ss_dssp SSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHH
Confidence 4666777777777777777666665542 1112222377787777777777766655555543
No 119
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=39.56 E-value=80 Score=29.77 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=38.7
Q ss_pred ccccCCCcHHHHHHHcCcHHHHHHHHhcCC-CC-CccCCCCCChHHHHHHHcCcHHHHHHHHhccc----cccCCCChhh
Q 041247 102 KKNKIGCTAFFYAAASGMVEIVEEMMKGNK-DI-AMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK----NSLTDDDCIE 175 (507)
Q Consensus 102 ~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~-~~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t 175 (507)
..|.+|+..+.-....+..+..+.+++.=. .+ .-..+..|.-.+..+......+-...+++.-. .-..|.+|..
T Consensus 73 ~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ 152 (369)
T 3k49_A 73 SNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNH 152 (369)
T ss_dssp HHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHH
T ss_pred hhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccch
Confidence 356677766666666666555444444211 10 01123444444444444433332222222111 2235666666
Q ss_pred HHHHHHHcCCh
Q 041247 176 LLVQLIETGFY 186 (507)
Q Consensus 176 ~L~~A~~~~~~ 186 (507)
.+..+.+.+..
T Consensus 153 ViQ~~l~~~~~ 163 (369)
T 3k49_A 153 VIQKAIETIPI 163 (369)
T ss_dssp HHHHHHHHSCG
T ss_pred HHHHHHHhCCH
Confidence 66555555443
No 120
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.40 E-value=53 Score=30.65 Aligned_cols=20 Identities=0% Similarity=0.016 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 041247 448 TLFIAIAAMMVVFSATRFIV 467 (507)
Q Consensus 448 ~l~~s~~~m~~af~~~~~~v 467 (507)
+..+|++++...|.+|+|-+
T Consensus 282 LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 45567888889999999986
No 121
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=23.17 E-value=58 Score=19.24 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=13.4
Q ss_pred HhHHHHHcCCHHHHHHH
Q 041247 40 KLYRAALNGDWAVAKDI 56 (507)
Q Consensus 40 ~Lh~Aa~~g~~~~v~~l 56 (507)
-++.|+..|+.+.++.|
T Consensus 16 qiyvA~seGd~etv~~L 32 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHH
Confidence 36788888998888844
No 122
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=21.84 E-value=3.6e+02 Score=25.78 Aligned_cols=270 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred ccccCCHHhHHHHHcC-CHHHHHHHHhhchhc----cccccCCCCCcHHHHHHHcCCH-------HHHHHHHHcCCchhh
Q 041247 33 EDSLRRLKLYRAALNG-DWAVAKDIYDKYKVE----IGQEITNLGNTALHVAAQANCI-------DFVKELLKMMSTEDL 100 (507)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g-~~~~v~~ll~~~~~~----i~~~~~~~g~t~Lh~Aa~~g~~-------e~v~~Ll~~~~~~~~ 100 (507)
.|.+|..-|......+ +.+....+.++--.. +.-..|..|+..+..-...|.. +.-+.+++...|.-.
T Consensus 36 ~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~ 115 (412)
T 3k62_A 36 VDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMT 115 (412)
T ss_dssp TSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHH
T ss_pred cCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHH
Q ss_pred c-ccccCCCcHHHHHHHcCcHHHHHHHHhcC----CCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc----cc--cccC
Q 041247 101 A-KKNKIGCTAFFYAAASGMVEIVEEMMKGN----KDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ----TK--NSLT 169 (507)
Q Consensus 101 ~-~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~----~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~----~~--~~~~ 169 (507)
. ..|.+|.-.+..+......+-...+++.- .-..-.+|.+|...+......+..+..+.+++. +. .-..
T Consensus 116 ~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~ 195 (412)
T 3k62_A 116 DMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICS 195 (412)
T ss_dssp HHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhc
Q ss_pred CCChhhHHHHHHHcCCh--------------------HHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccccc
Q 041247 170 DDDCIELLVQLIETGFY--------------------VVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGT 229 (507)
Q Consensus 170 ~~~g~t~L~~A~~~~~~--------------------~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~ 229 (507)
+..|.-.+..+.+.... +++..++.+...+ ..|..|+-.+.+....|.
T Consensus 196 h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L--~~dq~GNyViQ~iL~~g~---------- 263 (412)
T 3k62_A 196 DKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQEL--ATNEYANYIIQHIVSNDD---------- 263 (412)
T ss_dssp SHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHH--HHSTTTHHHHHHHHHCGG----------
T ss_pred CcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--hhCccccHHHHHHHhcCC----------
Q ss_pred ccccccchhhhhhhhHHHHHH-HHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccC
Q 041247 230 FFQRCFNLGAEKEENKQALEL-VESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDEN 308 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~-v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~ 308 (507)
.+- -+.++++.. .-+...-...+.| ...+.-+...+..+..+.+++.-.+........
T Consensus 264 ------------------~~~~r~~ii~~~l-~~~~~~LS~~Kfg--SnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~ 322 (412)
T 3k62_A 264 ------------------LAVYRECIIEKCL-MRNLLSLSQEKFA--SHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDT 322 (412)
T ss_dssp ------------------GHHHHHHHHHHHT-TTCHHHHHTSTTH--HHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTT
T ss_pred ------------------chhHHHHHHHHHH-HHHHHHHhcccHh--HHHHHHHHHhCCHHHHHHHHHHHHhhccCCccc
Q ss_pred CCchHHHHHHhCchH-HHHHHHhchhhh
Q 041247 309 GYTIFHVAVLNRLEE-LFKFIYDAKSIA 335 (507)
Q Consensus 309 g~t~L~~A~~~~~~~-iv~~Ll~~ga~~ 335 (507)
|.++|..-+....-. +++.+++...+.
T Consensus 323 ~~~~l~~L~~DqyGNYViQ~~L~~~~~~ 350 (412)
T 3k62_A 323 GKDALDIMMFHQFGNYVVQCMLTICCDA 350 (412)
T ss_dssp CCCHHHHHHHSTTHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhcCCchHHHHHHHHHHcccc
No 123
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.95 E-value=63 Score=30.48 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 041247 448 TLFIAIAAMMVVFSATRFIV 467 (507)
Q Consensus 448 ~l~~s~~~m~~af~~~~~~v 467 (507)
+..+|++++...|++|+|-+
T Consensus 306 LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 306 LTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 45578888889999999875
No 124
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=20.67 E-value=1.3e+02 Score=29.68 Aligned_cols=89 Identities=12% Similarity=0.030 Sum_probs=43.8
Q ss_pred hHHHHHHHcCChHHHHHHHhcCchhhhhcccCCch-HHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHH
Q 041247 175 ELLVQLIETGFYVVALQLLRDRPRLATKRAENEET-ALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVES 253 (507)
Q Consensus 175 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t-~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 253 (507)
+.+...++.|+.+-+..+++.-...--..|....+ .+...++.|+ ...+.++.+.
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~------------------------~~~A~~l~~~ 165 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD------------------------ADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC------------------------HHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC------------------------HHHHHHHHHH
Confidence 44566667777776666665421111111222222 3344455555 1233555555
Q ss_pred HHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHH
Q 041247 254 LWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIR 296 (507)
Q Consensus 254 Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~ 296 (507)
+.+.+. .++. ... ++.+...++.|+.+-+..+++
T Consensus 166 M~~~G~-~Pd~--~ty------~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 166 MVESEV-VPEE--PEL------AALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHTTC-CCCH--HHH------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCC-CCCH--HHH------HHHHHHHhhCCCHHHHHHHHH
Confidence 555554 4443 222 455556677777765555554
No 125
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=20.23 E-value=3.7e+02 Score=22.21 Aligned_cols=132 Identities=11% Similarity=0.014 Sum_probs=74.1
Q ss_pred CHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHc
Q 041247 38 RLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS 117 (507)
Q Consensus 38 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~ 117 (507)
.+-+-.|...|+++.+..+.++- +.. ..-.+.=..|...|+.++++.-..+. .|+. ..+.+....
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l----~~~--~~Wk~Lg~~AL~~gn~~lAe~cy~~~--~D~~-------~L~~Ly~~t 73 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKL----NDS--ITWERLIQEALAQGNASLAEMIYQTQ--HSFD-------KLSFLYLVT 73 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH----CCH--HHHHHHHHHHHHTTCHHHHHHHHHHT--TCHH-------HHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHh----CCH--HHHHHHHHHHHHcCChHHHHHHHHHh--CCHH-------HHHHHHHHh
Confidence 34477888888888877665531 110 01122335666778888888877763 2222 223344456
Q ss_pred CcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcH-HHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcC
Q 041247 118 GMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQG-QMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDR 196 (507)
Q Consensus 118 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 196 (507)
|+.+-++.|.+.. ....+-...++.+...|+. +.++.|.+.+. ..-+...|-.+|..++.+.+++..
T Consensus 74 g~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r-------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 74 GDVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGS-------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp TCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC-------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCC-------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 6666655554321 1111123456666666665 45666666553 224566677788888888887663
Done!