Query 041248
Match_columns 813
No_of_seqs 490 out of 3907
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.9E-96 2E-100 842.9 49.5 759 14-809 9-793 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.1E-58 4.6E-63 563.6 51.0 604 158-803 184-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.7E-44 8E-49 376.8 17.2 280 163-445 1-284 (287)
4 PLN03210 Resistant to P. syrin 99.7 4.8E-17 1E-21 200.3 17.2 269 516-805 556-888 (1153)
5 PLN00113 leucine-rich repeat r 99.7 4.7E-17 1E-21 200.4 15.5 198 517-738 117-317 (968)
6 PLN00113 leucine-rich repeat r 99.7 5.8E-17 1.3E-21 199.5 14.8 257 517-798 92-368 (968)
7 KOG4194 Membrane glycoprotein 99.7 2E-18 4.3E-23 180.4 1.3 248 519-797 174-427 (873)
8 KOG0444 Cytoskeletal regulator 99.7 5.1E-19 1.1E-23 185.7 -3.5 149 499-653 35-187 (1255)
9 KOG0444 Cytoskeletal regulator 99.7 1.6E-18 3.5E-23 182.0 -3.0 255 512-803 97-379 (1255)
10 KOG0472 Leucine-rich repeat pr 99.6 4.1E-17 9E-22 163.5 -0.0 265 512-798 200-540 (565)
11 KOG4194 Membrane glycoprotein 99.6 7.9E-16 1.7E-20 161.2 5.2 258 520-796 104-375 (873)
12 PRK15387 E3 ubiquitin-protein 99.5 1.5E-13 3.1E-18 157.2 15.4 265 484-798 189-457 (788)
13 KOG0617 Ras suppressor protein 99.5 5.1E-16 1.1E-20 137.8 -5.1 163 509-694 24-189 (264)
14 KOG0472 Leucine-rich repeat pr 99.5 2.3E-16 5E-21 158.2 -9.7 238 520-798 70-309 (565)
15 PRK04841 transcriptional regul 99.5 6.8E-12 1.5E-16 153.9 25.0 291 157-490 13-332 (903)
16 KOG0617 Ras suppressor protein 99.4 7E-15 1.5E-19 130.7 -2.9 167 530-722 23-190 (264)
17 PRK15370 E3 ubiquitin-protein 99.4 7.7E-13 1.7E-17 152.4 12.9 239 501-797 183-426 (754)
18 PRK00411 cdc6 cell division co 99.3 5.4E-10 1.2E-14 122.9 28.0 295 157-471 29-358 (394)
19 KOG4658 Apoptotic ATPase [Sign 99.3 3.9E-12 8.4E-17 149.0 7.5 237 500-745 527-786 (889)
20 KOG0618 Serine/threonine phosp 99.3 5E-13 1.1E-17 148.1 0.1 258 518-798 219-488 (1081)
21 PRK15370 E3 ubiquitin-protein 99.3 8.5E-12 1.8E-16 143.9 9.0 225 519-802 179-403 (754)
22 KOG4237 Extracellular matrix p 99.3 1.4E-12 3.1E-17 131.3 1.9 257 499-774 49-357 (498)
23 COG2909 MalT ATP-dependent tra 99.3 4.4E-10 9.5E-15 124.9 21.0 293 158-492 19-340 (894)
24 PRK15387 E3 ubiquitin-protein 99.2 3.4E-11 7.4E-16 138.0 11.7 233 520-803 203-438 (788)
25 TIGR03015 pepcterm_ATPase puta 99.2 2.2E-09 4.7E-14 111.6 23.7 182 177-366 41-242 (269)
26 KOG0618 Serine/threonine phosp 99.2 1.5E-12 3.3E-17 144.3 -0.3 214 564-805 240-470 (1081)
27 TIGR02928 orc1/cdc6 family rep 99.2 1.3E-08 2.8E-13 110.8 28.7 296 158-471 15-350 (365)
28 PF01637 Arch_ATPase: Archaeal 99.2 3.5E-11 7.5E-16 122.3 7.8 196 160-361 1-233 (234)
29 KOG4237 Extracellular matrix p 99.1 1.9E-12 4.2E-17 130.3 -3.5 127 523-655 51-180 (498)
30 PRK00080 ruvB Holliday junctio 99.1 7.7E-10 1.7E-14 117.8 15.9 273 158-471 25-310 (328)
31 TIGR00635 ruvB Holliday juncti 99.1 4.3E-09 9.3E-14 111.4 20.9 273 158-471 4-289 (305)
32 PF05729 NACHT: NACHT domain 99.0 2.7E-09 5.8E-14 102.0 10.6 142 180-330 1-163 (166)
33 PF14580 LRR_9: Leucine-rich r 99.0 7.8E-10 1.7E-14 104.0 5.5 114 531-652 10-126 (175)
34 COG3899 Predicted ATPase [Gene 98.9 3.3E-08 7.2E-13 116.8 18.3 305 160-487 2-383 (849)
35 COG2256 MGS1 ATPase related to 98.9 2.2E-07 4.7E-12 95.4 19.8 220 159-409 25-265 (436)
36 PTZ00112 origin recognition co 98.9 4.8E-07 1E-11 102.0 24.1 207 157-365 754-985 (1164)
37 cd00116 LRR_RI Leucine-rich re 98.8 1.3E-09 2.7E-14 116.6 2.6 239 536-799 19-291 (319)
38 PRK06893 DNA replication initi 98.8 3.8E-08 8.2E-13 98.7 12.2 151 178-361 38-202 (229)
39 KOG0532 Leucine-rich repeat (L 98.8 2.2E-10 4.7E-15 121.0 -4.2 125 522-654 79-204 (722)
40 KOG0532 Leucine-rich repeat (L 98.8 2.6E-10 5.6E-15 120.4 -3.7 191 522-743 54-247 (722)
41 cd00116 LRR_RI Leucine-rich re 98.8 5.5E-09 1.2E-13 111.7 5.4 252 520-796 25-317 (319)
42 PF14580 LRR_9: Leucine-rich r 98.8 8E-09 1.7E-13 97.2 5.6 125 516-647 17-148 (175)
43 KOG3207 Beta-tubulin folding c 98.7 3.2E-09 7E-14 109.0 0.9 112 537-649 118-232 (505)
44 PRK13342 recombination factor 98.7 9E-07 2E-11 97.2 19.3 174 158-362 12-196 (413)
45 KOG1259 Nischarin, modulator o 98.7 3.5E-09 7.7E-14 103.1 -0.3 134 514-655 280-415 (490)
46 TIGR03420 DnaA_homol_Hda DnaA 98.6 1.8E-07 4E-12 94.3 11.1 168 163-363 22-202 (226)
47 KOG1259 Nischarin, modulator o 98.6 1.3E-08 2.8E-13 99.3 0.8 127 564-714 283-409 (490)
48 PRK07003 DNA polymerase III su 98.5 4.4E-06 9.5E-11 94.1 19.8 193 158-362 16-221 (830)
49 PRK04195 replication factor C 98.5 4.6E-06 1E-10 93.6 20.1 242 158-445 14-271 (482)
50 COG4886 Leucine-rich repeat (L 98.5 5.6E-08 1.2E-12 107.1 4.5 121 523-650 98-220 (394)
51 PRK08727 hypothetical protein; 98.5 1.1E-06 2.3E-11 88.4 12.4 168 159-359 20-201 (233)
52 COG1474 CDC6 Cdc6-related prot 98.5 8.4E-06 1.8E-10 86.8 19.6 200 158-362 17-238 (366)
53 KOG3207 Beta-tubulin folding c 98.5 2.4E-08 5.2E-13 102.7 0.4 130 519-653 122-260 (505)
54 KOG2028 ATPase related to the 98.5 2.1E-06 4.6E-11 86.4 13.8 173 159-357 139-331 (554)
55 PTZ00202 tuzin; Provisional 98.5 4.5E-05 9.8E-10 80.2 23.0 163 153-330 257-434 (550)
56 PRK12402 replication factor C 98.4 3E-06 6.4E-11 91.3 14.6 193 158-360 15-224 (337)
57 TIGR02903 spore_lon_C ATP-depe 98.4 4.9E-05 1.1E-09 87.3 25.0 200 158-363 154-396 (615)
58 PRK14960 DNA polymerase III su 98.4 1.1E-05 2.3E-10 90.1 18.7 190 158-360 15-217 (702)
59 PRK05564 DNA polymerase III su 98.4 5.3E-06 1.1E-10 87.8 15.9 176 159-361 5-189 (313)
60 cd00009 AAA The AAA+ (ATPases 98.4 1.9E-06 4.2E-11 80.1 11.3 123 161-301 1-131 (151)
61 PF13173 AAA_14: AAA domain 98.4 4.9E-07 1.1E-11 81.8 6.4 120 179-322 2-127 (128)
62 PF05496 RuvB_N: Holliday junc 98.4 6.2E-06 1.3E-10 79.4 14.0 174 158-365 24-224 (233)
63 COG4886 Leucine-rich repeat (L 98.4 2.4E-07 5.3E-12 102.0 4.8 172 516-714 114-287 (394)
64 KOG4341 F-box protein containi 98.4 3.4E-08 7.3E-13 101.1 -2.0 133 669-806 310-446 (483)
65 PRK14949 DNA polymerase III su 98.4 4.9E-06 1.1E-10 95.6 14.6 193 158-362 16-220 (944)
66 PF13855 LRR_8: Leucine rich r 98.4 5.1E-07 1.1E-11 69.5 4.7 56 566-624 2-59 (61)
67 KOG2120 SCF ubiquitin ligase, 98.4 2.4E-08 5.2E-13 97.5 -3.4 181 566-797 186-374 (419)
68 PRK00440 rfc replication facto 98.4 6.9E-06 1.5E-10 87.7 15.1 178 158-359 17-200 (319)
69 PRK08084 DNA replication initi 98.4 4.3E-06 9.2E-11 84.2 12.6 170 158-360 23-207 (235)
70 PLN03025 replication factor C 98.3 4.6E-06 1E-10 88.4 13.0 179 158-358 13-196 (319)
71 PF13855 LRR_8: Leucine rich r 98.3 4.4E-07 9.6E-12 69.9 3.8 59 591-650 1-60 (61)
72 KOG4341 F-box protein containi 98.3 3.4E-08 7.3E-13 101.1 -3.5 241 537-803 161-418 (483)
73 PRK14961 DNA polymerase III su 98.3 1.3E-05 2.9E-10 86.3 16.2 189 158-359 16-217 (363)
74 PF13401 AAA_22: AAA domain; P 98.3 1.2E-06 2.7E-11 79.7 7.1 117 178-299 3-125 (131)
75 PRK14963 DNA polymerase III su 98.3 1.1E-05 2.4E-10 89.8 15.7 191 158-359 14-214 (504)
76 PF14516 AAA_35: AAA-like doma 98.3 0.0006 1.3E-08 72.5 28.0 203 156-369 9-246 (331)
77 cd01128 rho_factor Transcripti 98.3 1.5E-06 3.3E-11 87.2 7.8 91 178-272 15-114 (249)
78 PRK12323 DNA polymerase III su 98.3 8.7E-06 1.9E-10 90.5 13.9 193 158-361 16-224 (700)
79 PF13191 AAA_16: AAA ATPase do 98.3 1.5E-06 3.3E-11 84.5 6.9 45 159-203 1-48 (185)
80 PRK09087 hypothetical protein; 98.3 1.1E-05 2.3E-10 80.5 13.0 139 178-361 43-194 (226)
81 PRK07471 DNA polymerase III su 98.3 3.2E-05 7E-10 82.6 17.1 197 158-363 19-239 (365)
82 PRK14956 DNA polymerase III su 98.2 1.3E-05 2.8E-10 86.9 13.7 190 158-359 18-219 (484)
83 PRK14962 DNA polymerase III su 98.2 1.8E-05 3.9E-10 87.4 15.1 185 158-365 14-222 (472)
84 PRK14957 DNA polymerase III su 98.2 1.6E-05 3.5E-10 88.6 14.6 182 158-363 16-222 (546)
85 PRK13341 recombination factor 98.2 5.5E-05 1.2E-09 87.6 19.4 167 158-358 28-213 (725)
86 PRK05642 DNA replication initi 98.2 1.5E-05 3.3E-10 80.2 12.6 149 179-360 45-206 (234)
87 KOG2120 SCF ubiquitin ligase, 98.2 8.6E-08 1.9E-12 93.7 -3.6 162 615-799 186-351 (419)
88 PRK07940 DNA polymerase III su 98.2 3.2E-05 7E-10 83.3 15.5 186 158-362 5-213 (394)
89 PRK06645 DNA polymerase III su 98.2 3.2E-05 7E-10 85.7 15.8 193 158-359 21-226 (507)
90 PRK07994 DNA polymerase III su 98.2 1.8E-05 3.9E-10 89.6 13.7 193 158-362 16-220 (647)
91 COG3903 Predicted ATPase [Gene 98.2 2.8E-06 6.1E-11 88.1 6.6 293 178-492 13-316 (414)
92 PRK08903 DnaA regulatory inact 98.2 1.2E-05 2.6E-10 80.9 11.2 169 161-366 22-203 (227)
93 PLN03150 hypothetical protein; 98.2 4.6E-06 9.9E-11 96.5 8.6 104 541-650 419-526 (623)
94 TIGR01242 26Sp45 26S proteasom 98.2 7.3E-06 1.6E-10 88.7 9.7 171 158-356 122-328 (364)
95 PRK09112 DNA polymerase III su 98.1 4.6E-05 9.9E-10 81.0 15.3 197 158-363 23-241 (351)
96 PRK14964 DNA polymerase III su 98.1 2.8E-05 6.1E-10 85.4 14.0 179 158-359 13-214 (491)
97 PRK05896 DNA polymerase III su 98.1 2.6E-05 5.5E-10 87.1 13.7 194 158-364 16-223 (605)
98 TIGR02397 dnaX_nterm DNA polym 98.1 5.5E-05 1.2E-09 82.1 16.2 181 158-362 14-218 (355)
99 PRK14951 DNA polymerase III su 98.1 3.9E-05 8.4E-10 86.8 15.0 195 158-361 16-224 (618)
100 TIGR00678 holB DNA polymerase 98.1 6.5E-05 1.4E-09 73.1 14.9 160 169-358 3-187 (188)
101 PRK14958 DNA polymerase III su 98.1 0.00013 2.8E-09 81.6 18.9 180 158-360 16-218 (509)
102 PRK14959 DNA polymerase III su 98.1 0.00012 2.6E-09 82.3 18.1 196 158-366 16-225 (624)
103 KOG0989 Replication factor C, 98.1 2.7E-05 6E-10 77.3 11.5 187 158-362 36-231 (346)
104 PRK08691 DNA polymerase III su 98.1 3.4E-05 7.5E-10 87.0 13.8 188 158-360 16-218 (709)
105 PRK09376 rho transcription ter 98.1 9E-06 1.9E-10 85.1 8.5 90 178-271 168-266 (416)
106 KOG1859 Leucine-rich repeat pr 98.1 1.4E-07 3E-12 102.8 -5.2 175 513-714 104-289 (1096)
107 PRK14955 DNA polymerase III su 98.1 2.7E-05 5.8E-10 85.0 12.5 196 158-359 16-225 (397)
108 PRK15386 type III secretion pr 98.1 1.2E-05 2.7E-10 85.0 8.8 63 562-632 49-112 (426)
109 PF00308 Bac_DnaA: Bacterial d 98.1 2.2E-05 4.8E-10 77.9 10.2 159 179-359 34-205 (219)
110 PRK14970 DNA polymerase III su 98.0 0.00011 2.5E-09 79.7 16.1 179 158-359 17-206 (367)
111 PRK07764 DNA polymerase III su 98.0 8.7E-05 1.9E-09 87.1 15.3 189 158-359 15-218 (824)
112 PRK14969 DNA polymerase III su 98.0 7.3E-05 1.6E-09 84.1 14.2 182 158-362 16-221 (527)
113 PLN03150 hypothetical protein; 98.0 1.4E-05 3E-10 92.5 8.5 84 566-653 419-504 (623)
114 KOG0531 Protein phosphatase 1, 98.0 9.5E-07 2.1E-11 97.5 -1.3 126 519-653 73-200 (414)
115 PF12799 LRR_4: Leucine Rich r 98.0 1.1E-05 2.4E-10 56.7 4.4 39 592-631 2-40 (44)
116 PRK09111 DNA polymerase III su 98.0 0.00012 2.6E-09 83.1 14.9 194 158-361 24-232 (598)
117 PRK14952 DNA polymerase III su 98.0 0.00012 2.6E-09 82.6 14.7 197 158-366 13-224 (584)
118 KOG2227 Pre-initiation complex 98.0 0.00052 1.1E-08 72.4 18.1 173 157-334 149-342 (529)
119 PRK14087 dnaA chromosomal repl 97.9 5E-05 1.1E-09 83.7 11.3 167 179-363 141-320 (450)
120 TIGR00767 rho transcription te 97.9 4.5E-05 9.7E-10 80.4 10.0 91 178-272 167-266 (415)
121 PRK03992 proteasome-activating 97.9 8.3E-05 1.8E-09 80.8 12.5 171 158-356 131-337 (389)
122 PRK07133 DNA polymerase III su 97.9 0.00017 3.6E-09 82.5 15.2 187 158-362 18-220 (725)
123 PRK14954 DNA polymerase III su 97.9 0.00019 4.1E-09 81.6 15.5 199 158-362 16-229 (620)
124 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 56.6 3.8 40 565-607 1-40 (44)
125 TIGR02881 spore_V_K stage V sp 97.9 0.00012 2.6E-09 75.3 12.8 153 159-333 7-194 (261)
126 PRK14971 DNA polymerase III su 97.9 0.00026 5.7E-09 81.0 16.2 178 158-359 17-219 (614)
127 KOG2982 Uncharacterized conser 97.9 4.1E-06 8.8E-11 82.3 1.3 208 562-797 68-290 (418)
128 COG2255 RuvB Holliday junction 97.9 0.0018 3.9E-08 64.0 19.1 172 158-363 26-224 (332)
129 KOG0531 Protein phosphatase 1, 97.9 2.1E-06 4.5E-11 94.8 -1.4 130 514-653 91-222 (414)
130 KOG2543 Origin recognition com 97.8 0.00013 2.8E-09 74.8 11.3 167 157-330 5-193 (438)
131 PRK14953 DNA polymerase III su 97.8 0.00039 8.4E-09 77.4 16.0 176 158-361 16-219 (486)
132 PRK11331 5-methylcytosine-spec 97.8 0.00015 3.3E-09 77.8 11.9 69 158-229 175-243 (459)
133 PRK08451 DNA polymerase III su 97.8 0.00044 9.6E-09 76.9 15.7 193 158-362 14-218 (535)
134 KOG1909 Ran GTPase-activating 97.8 4.7E-06 1E-10 84.0 0.2 159 517-690 29-225 (382)
135 TIGR00362 DnaA chromosomal rep 97.8 0.00027 5.9E-09 77.8 14.2 159 179-359 136-307 (405)
136 PRK06305 DNA polymerase III su 97.8 0.00048 1E-08 76.1 15.8 181 158-362 17-223 (451)
137 PRK14950 DNA polymerase III su 97.8 0.00044 9.4E-09 79.4 15.9 192 158-361 16-220 (585)
138 KOG3665 ZYG-1-like serine/thre 97.8 8.2E-06 1.8E-10 94.0 1.9 139 540-690 122-262 (699)
139 TIGR03345 VI_ClpV1 type VI sec 97.8 0.0002 4.3E-09 85.3 13.2 182 158-356 187-390 (852)
140 PRK06620 hypothetical protein; 97.8 0.00023 5E-09 70.3 11.6 132 180-358 45-185 (214)
141 PTZ00361 26 proteosome regulat 97.8 0.00015 3.3E-09 78.9 11.2 172 158-356 183-389 (438)
142 TIGR02880 cbbX_cfxQ probable R 97.8 0.00029 6.4E-09 73.0 12.9 154 159-332 23-210 (284)
143 PRK14088 dnaA chromosomal repl 97.8 0.00013 2.9E-09 80.4 10.7 159 179-359 130-302 (440)
144 KOG1644 U2-associated snRNP A' 97.7 4.4E-05 9.6E-10 71.2 5.4 102 519-624 43-150 (233)
145 PF05621 TniB: Bacterial TniB 97.7 0.00068 1.5E-08 68.7 14.3 198 159-360 35-259 (302)
146 PRK14948 DNA polymerase III su 97.7 0.00064 1.4E-08 77.8 15.9 193 158-361 16-221 (620)
147 PRK14965 DNA polymerase III su 97.7 0.0012 2.6E-08 75.4 18.1 192 158-362 16-221 (576)
148 CHL00181 cbbX CbbX; Provisiona 97.7 0.00061 1.3E-08 70.5 14.0 133 180-332 60-211 (287)
149 PRK12422 chromosomal replicati 97.7 0.0032 6.9E-08 69.4 20.2 152 180-355 142-306 (445)
150 PTZ00454 26S protease regulato 97.7 0.0003 6.4E-09 76.1 11.9 172 158-356 145-351 (398)
151 PHA02544 44 clamp loader, smal 97.7 0.00088 1.9E-08 71.3 15.4 143 158-328 21-171 (316)
152 PRK00149 dnaA chromosomal repl 97.7 0.00027 5.8E-09 78.9 11.5 159 179-359 148-319 (450)
153 TIGR02639 ClpA ATP-dependent C 97.7 0.00029 6.2E-09 83.3 12.3 155 158-330 182-358 (731)
154 KOG1909 Ran GTPase-activating 97.7 1.6E-05 3.5E-10 80.1 1.3 247 535-798 25-310 (382)
155 PRK15386 type III secretion pr 97.6 0.00011 2.4E-09 78.0 7.5 115 518-649 52-187 (426)
156 PRK06647 DNA polymerase III su 97.6 0.00092 2E-08 75.6 15.4 190 158-360 16-218 (563)
157 KOG3665 ZYG-1-like serine/thre 97.6 2.6E-05 5.7E-10 89.9 2.9 130 518-651 122-262 (699)
158 PRK14086 dnaA chromosomal repl 97.6 0.0024 5.2E-08 71.7 18.0 158 180-359 315-485 (617)
159 PRK07399 DNA polymerase III su 97.6 0.0082 1.8E-07 63.0 21.0 196 158-361 4-220 (314)
160 COG0593 DnaA ATPase involved i 97.6 0.0018 3.8E-08 69.1 16.0 259 178-492 112-392 (408)
161 KOG1859 Leucine-rich repeat pr 97.6 2.7E-06 5.8E-11 93.1 -5.1 130 513-651 159-291 (1096)
162 TIGR03689 pup_AAA proteasome A 97.6 0.0011 2.4E-08 73.4 14.7 157 159-332 183-380 (512)
163 PRK05563 DNA polymerase III su 97.6 0.0016 3.4E-08 74.1 16.1 189 158-359 16-217 (559)
164 PF05673 DUF815: Protein of un 97.6 0.0027 5.8E-08 62.4 15.1 46 158-203 27-76 (249)
165 KOG0991 Replication factor C, 97.5 0.0014 3.1E-08 62.4 11.7 46 158-203 27-72 (333)
166 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0014 3E-08 71.3 13.0 170 159-355 191-395 (802)
167 CHL00095 clpC Clp protease ATP 97.5 0.00053 1.2E-08 82.1 11.3 154 159-329 180-353 (821)
168 PRK05707 DNA polymerase III su 97.5 0.0027 5.8E-08 67.0 15.3 95 260-362 105-203 (328)
169 TIGR01241 FtsH_fam ATP-depende 97.5 0.0033 7E-08 71.1 16.9 172 158-356 55-260 (495)
170 COG3267 ExeA Type II secretory 97.4 0.005 1.1E-07 60.3 15.2 183 176-364 48-247 (269)
171 KOG4579 Leucine-rich repeat (L 97.4 2.1E-05 4.6E-10 68.4 -1.1 93 536-633 49-141 (177)
172 PRK10865 protein disaggregatio 97.4 0.0011 2.4E-08 79.3 12.3 46 158-203 178-223 (857)
173 PF10443 RNA12: RNA12 protein; 97.4 0.0039 8.5E-08 66.2 14.7 200 163-374 1-290 (431)
174 COG1373 Predicted ATPase (AAA+ 97.4 0.0023 5.1E-08 69.6 13.5 164 163-361 22-191 (398)
175 PRK08118 topology modulation p 97.4 0.00045 9.7E-09 65.4 7.0 36 180-215 2-37 (167)
176 TIGR00763 lon ATP-dependent pr 97.3 0.007 1.5E-07 72.2 18.2 46 158-203 320-371 (775)
177 TIGR03346 chaperone_ClpB ATP-d 97.3 0.00087 1.9E-08 80.5 10.7 153 159-330 174-349 (852)
178 PRK11034 clpA ATP-dependent Cl 97.3 0.00097 2.1E-08 77.9 10.1 155 159-330 187-362 (758)
179 TIGR00602 rad24 checkpoint pro 97.3 0.0011 2.4E-08 75.4 10.0 46 158-203 84-134 (637)
180 PRK08116 hypothetical protein; 97.3 0.00046 9.9E-09 70.8 6.4 101 180-298 115-219 (268)
181 PRK10536 hypothetical protein; 97.3 0.0026 5.6E-08 63.3 11.1 54 159-215 56-109 (262)
182 PRK07261 topology modulation p 97.3 0.0008 1.7E-08 64.1 7.4 66 181-271 2-67 (171)
183 COG1222 RPT1 ATP-dependent 26S 97.2 0.0093 2E-07 61.2 14.8 181 159-367 152-372 (406)
184 PRK08769 DNA polymerase III su 97.2 0.0096 2.1E-07 62.3 15.5 173 165-363 11-209 (319)
185 smart00382 AAA ATPases associa 97.2 0.0013 2.9E-08 60.2 7.9 88 179-273 2-90 (148)
186 CHL00176 ftsH cell division pr 97.2 0.0044 9.6E-08 71.1 13.4 171 158-355 183-387 (638)
187 KOG0741 AAA+-type ATPase [Post 97.2 0.006 1.3E-07 65.3 13.1 145 178-352 537-704 (744)
188 PRK06871 DNA polymerase III su 97.1 0.019 4.2E-07 60.1 16.4 176 166-359 10-200 (325)
189 PRK10787 DNA-binding ATP-depen 97.1 0.0092 2E-07 70.5 15.4 159 157-330 321-506 (784)
190 COG0466 Lon ATP-dependent Lon 97.1 0.0072 1.6E-07 67.5 13.5 159 158-331 323-509 (782)
191 PF00004 AAA: ATPase family as 97.1 0.0013 2.8E-08 59.7 6.7 22 182-203 1-22 (132)
192 KOG4579 Leucine-rich repeat (L 97.1 7.7E-05 1.7E-09 65.0 -1.3 87 519-610 54-142 (177)
193 PF04665 Pox_A32: Poxvirus A32 97.1 0.0016 3.4E-08 64.5 7.5 36 180-218 14-49 (241)
194 PRK08058 DNA polymerase III su 97.1 0.013 2.8E-07 62.3 14.9 161 159-329 6-181 (329)
195 PRK12377 putative replication 97.0 0.0019 4.2E-08 64.9 7.8 74 178-271 100-173 (248)
196 KOG1644 U2-associated snRNP A' 97.0 0.00081 1.8E-08 63.0 4.4 104 565-687 42-149 (233)
197 KOG1514 Origin recognition com 97.0 0.033 7.1E-07 62.2 17.1 200 158-364 396-623 (767)
198 KOG0730 AAA+-type ATPase [Post 96.9 0.009 1.9E-07 66.1 12.5 170 159-356 435-637 (693)
199 COG2812 DnaX DNA polymerase II 96.9 0.0046 1E-07 68.1 10.1 188 158-357 16-215 (515)
200 PRK12608 transcription termina 96.9 0.0051 1.1E-07 64.8 9.9 102 168-271 121-230 (380)
201 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0073 1.6E-07 67.0 11.7 173 158-356 228-429 (489)
202 PF13177 DNA_pol3_delta2: DNA 96.9 0.0081 1.8E-07 56.6 10.2 137 162-318 1-162 (162)
203 KOG1947 Leucine rich repeat pr 96.8 0.00034 7.5E-09 79.4 0.5 246 537-805 185-446 (482)
204 PRK06090 DNA polymerase III su 96.8 0.045 9.8E-07 57.2 16.0 175 166-362 11-201 (319)
205 PF02562 PhoH: PhoH-like prote 96.8 0.0035 7.7E-08 60.7 7.2 128 162-299 4-155 (205)
206 PRK07993 DNA polymerase III su 96.8 0.036 7.7E-07 58.8 15.4 177 166-360 10-202 (334)
207 KOG2228 Origin recognition com 96.8 0.009 1.9E-07 60.6 10.1 170 158-330 24-219 (408)
208 TIGR01243 CDC48 AAA family ATP 96.8 0.0084 1.8E-07 71.3 11.7 172 159-357 179-382 (733)
209 PRK12727 flagellar biosynthesi 96.7 0.052 1.1E-06 59.9 16.0 89 178-271 349-438 (559)
210 TIGR02639 ClpA ATP-dependent C 96.7 0.01 2.2E-07 70.3 11.6 46 158-203 454-508 (731)
211 TIGR02640 gas_vesic_GvpN gas v 96.7 0.03 6.5E-07 57.5 13.4 53 167-227 11-63 (262)
212 PRK08181 transposase; Validate 96.6 0.0028 6.2E-08 64.6 5.7 77 172-271 101-177 (269)
213 PRK06835 DNA replication prote 96.6 0.045 9.7E-07 57.7 14.8 37 179-218 183-219 (329)
214 KOG2739 Leucine-rich acidic nu 96.6 0.00098 2.1E-08 65.3 2.1 12 564-575 64-75 (260)
215 COG0542 clpA ATP-binding subun 96.6 0.058 1.3E-06 62.2 16.2 104 158-272 491-604 (786)
216 PF00448 SRP54: SRP54-type pro 96.6 0.0065 1.4E-07 59.0 7.6 89 179-270 1-92 (196)
217 PRK09361 radB DNA repair and r 96.6 0.009 2E-07 59.9 8.9 46 178-227 22-67 (225)
218 PF13207 AAA_17: AAA domain; P 96.6 0.0019 4.1E-08 57.7 3.5 23 181-203 1-23 (121)
219 PRK06921 hypothetical protein; 96.6 0.0023 5E-08 65.5 4.5 39 178-218 116-154 (266)
220 KOG2004 Mitochondrial ATP-depe 96.6 0.025 5.3E-07 63.2 12.5 158 158-330 411-596 (906)
221 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0031 6.8E-08 66.1 5.3 45 159-203 52-102 (361)
222 KOG2123 Uncharacterized conser 96.5 0.00017 3.8E-09 70.4 -3.8 102 539-647 18-125 (388)
223 PRK06964 DNA polymerase III su 96.5 0.11 2.3E-06 55.1 16.5 91 260-362 131-225 (342)
224 TIGR01243 CDC48 AAA family ATP 96.5 0.027 5.9E-07 67.0 13.4 171 159-356 454-657 (733)
225 COG5238 RNA1 Ran GTPase-activa 96.5 0.00092 2E-08 65.3 0.8 38 587-624 88-130 (388)
226 PRK04296 thymidine kinase; Pro 96.5 0.0037 8E-08 60.7 5.0 114 180-302 3-118 (190)
227 PRK06526 transposase; Provisio 96.4 0.0033 7.2E-08 63.7 4.6 26 178-203 97-122 (254)
228 PRK09183 transposase/IS protei 96.4 0.0053 1.1E-07 62.7 5.9 25 179-203 102-126 (259)
229 KOG1947 Leucine rich repeat pr 96.4 0.0011 2.3E-08 75.4 0.9 237 518-778 188-442 (482)
230 TIGR02237 recomb_radB DNA repa 96.4 0.01 2.3E-07 58.7 7.9 48 178-229 11-58 (209)
231 KOG0734 AAA+-type ATPase conta 96.4 0.016 3.5E-07 62.2 9.3 45 159-203 305-361 (752)
232 KOG0743 AAA+-type ATPase [Post 96.4 0.13 2.9E-06 54.8 16.0 149 180-367 236-414 (457)
233 KOG2123 Uncharacterized conser 96.4 0.00037 8E-09 68.2 -2.6 107 563-685 17-124 (388)
234 PF03215 Rad17: Rad17 cell cyc 96.3 0.014 3.1E-07 65.2 9.3 55 159-218 20-79 (519)
235 cd01393 recA_like RecA is a b 96.3 0.032 6.9E-07 56.0 11.1 92 178-271 18-124 (226)
236 PF01695 IstB_IS21: IstB-like 96.3 0.0029 6.3E-08 60.5 3.2 73 178-271 46-118 (178)
237 KOG0731 AAA+-type ATPase conta 96.3 0.045 9.8E-07 62.6 12.9 174 158-359 311-521 (774)
238 KOG2739 Leucine-rich acidic nu 96.3 0.0023 5.1E-08 62.7 2.4 102 517-623 42-152 (260)
239 cd01394 radB RadB. The archaea 96.3 0.029 6.3E-07 56.0 10.4 42 178-222 18-59 (218)
240 PRK06696 uridine kinase; Valid 96.2 0.007 1.5E-07 60.5 5.6 42 162-203 2-46 (223)
241 TIGR03345 VI_ClpV1 type VI sec 96.2 0.011 2.5E-07 70.6 8.0 47 157-203 565-620 (852)
242 TIGR02012 tigrfam_recA protein 96.2 0.013 2.9E-07 61.0 7.6 86 178-271 54-143 (321)
243 KOG0735 AAA+-type ATPase [Post 96.2 0.033 7.2E-07 62.1 10.7 156 179-361 431-615 (952)
244 COG1484 DnaC DNA replication p 96.2 0.021 4.6E-07 58.0 8.8 74 178-271 104-177 (254)
245 TIGR03346 chaperone_ClpB ATP-d 96.2 0.023 5E-07 68.5 10.4 46 158-203 565-619 (852)
246 PRK10865 protein disaggregatio 96.1 0.033 7.2E-07 66.9 11.6 46 158-203 568-622 (857)
247 PF12061 DUF3542: Protein of u 96.1 0.0068 1.5E-07 60.4 4.6 76 9-92 298-373 (402)
248 PTZ00494 tuzin-like protein; P 96.1 0.39 8.5E-06 51.2 17.4 163 157-330 370-544 (664)
249 PRK04132 replication factor C 96.1 0.072 1.6E-06 62.8 13.7 150 187-359 574-728 (846)
250 KOG2982 Uncharacterized conser 96.1 0.0014 2.9E-08 65.0 -0.3 189 589-804 69-267 (418)
251 cd00983 recA RecA is a bacter 96.1 0.015 3.2E-07 60.7 7.2 86 178-271 54-143 (325)
252 cd01131 PilT Pilus retraction 96.1 0.0069 1.5E-07 59.2 4.6 108 180-301 2-110 (198)
253 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.029 6.4E-07 56.7 9.4 57 178-236 18-78 (235)
254 PRK09354 recA recombinase A; P 96.1 0.017 3.8E-07 60.7 7.7 86 178-271 59-148 (349)
255 KOG0733 Nuclear AAA ATPase (VC 96.0 0.05 1.1E-06 59.7 11.0 153 179-356 545-718 (802)
256 PRK07952 DNA replication prote 96.0 0.035 7.6E-07 55.8 9.5 87 167-272 85-173 (244)
257 PF08423 Rad51: Rad51; InterP 96.0 0.026 5.7E-07 57.4 8.8 59 178-237 37-98 (256)
258 cd01120 RecA-like_NTPases RecA 96.0 0.038 8.2E-07 52.0 9.5 39 181-222 1-39 (165)
259 CHL00095 clpC Clp protease ATP 96.0 0.016 3.6E-07 69.5 8.3 46 158-203 509-563 (821)
260 COG1223 Predicted ATPase (AAA+ 96.0 0.16 3.5E-06 49.8 13.2 170 158-355 121-318 (368)
261 PF07693 KAP_NTPase: KAP famil 96.0 0.15 3.3E-06 54.3 14.9 40 164-203 2-44 (325)
262 PF14532 Sigma54_activ_2: Sigm 96.0 0.0085 1.8E-07 54.8 4.4 43 161-203 1-45 (138)
263 COG0470 HolB ATPase involved i 95.9 0.05 1.1E-06 58.1 10.7 44 160-203 3-48 (325)
264 PRK00771 signal recognition pa 95.9 0.052 1.1E-06 59.4 10.7 89 178-270 94-184 (437)
265 KOG0728 26S proteasome regulat 95.9 0.2 4.3E-06 48.7 13.1 166 160-349 148-350 (404)
266 PRK05541 adenylylsulfate kinas 95.9 0.02 4.3E-07 54.9 6.6 36 178-216 6-41 (176)
267 COG0572 Udk Uridine kinase [Nu 95.8 0.027 5.8E-07 54.6 7.3 79 178-262 7-85 (218)
268 KOG3864 Uncharacterized conser 95.8 0.0012 2.6E-08 62.0 -1.8 69 724-800 120-190 (221)
269 cd03115 SRP The signal recogni 95.8 0.033 7.1E-07 53.2 8.0 23 181-203 2-24 (173)
270 cd01133 F1-ATPase_beta F1 ATP 95.8 0.068 1.5E-06 54.2 10.4 93 178-272 68-174 (274)
271 PRK15455 PrkA family serine pr 95.8 0.011 2.3E-07 65.4 5.0 45 159-203 77-127 (644)
272 KOG0744 AAA+-type ATPase [Post 95.8 0.031 6.6E-07 56.5 7.6 81 179-272 177-261 (423)
273 cd03238 ABC_UvrA The excision 95.8 0.023 5E-07 54.1 6.7 116 178-303 20-152 (176)
274 PRK10733 hflB ATP-dependent me 95.8 0.078 1.7E-06 61.7 12.3 170 159-355 153-356 (644)
275 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.053 1.1E-06 54.8 9.7 49 178-231 20-68 (237)
276 PRK06547 hypothetical protein; 95.8 0.014 3.1E-07 55.3 5.2 34 170-203 6-39 (172)
277 PF00560 LRR_1: Leucine Rich R 95.8 0.0046 9.9E-08 36.1 1.1 18 593-610 2-19 (22)
278 KOG1969 DNA replication checkp 95.7 0.027 5.8E-07 63.1 7.5 72 178-272 325-398 (877)
279 COG0464 SpoVK ATPases of the A 95.7 0.16 3.4E-06 57.7 14.3 170 159-354 243-445 (494)
280 PRK10867 signal recognition pa 95.7 0.044 9.6E-07 59.8 9.2 26 178-203 99-124 (433)
281 PRK08699 DNA polymerase III su 95.7 0.19 4.1E-06 53.1 13.7 25 179-203 21-45 (325)
282 COG0563 Adk Adenylate kinase a 95.7 0.021 4.5E-07 54.5 5.9 23 181-203 2-24 (178)
283 PRK14722 flhF flagellar biosyn 95.7 0.039 8.5E-07 58.8 8.5 89 178-271 136-225 (374)
284 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.045 9.7E-07 50.7 7.8 117 180-301 3-139 (159)
285 PRK08939 primosomal protein Dn 95.7 0.051 1.1E-06 56.8 9.2 116 162-298 135-259 (306)
286 TIGR03499 FlhF flagellar biosy 95.7 0.046 1E-06 56.7 8.8 88 178-270 193-281 (282)
287 TIGR02239 recomb_RAD51 DNA rep 95.6 0.064 1.4E-06 56.4 9.8 59 178-237 95-156 (316)
288 cd01121 Sms Sms (bacterial rad 95.6 0.049 1.1E-06 58.5 9.1 84 178-270 81-167 (372)
289 TIGR00959 ffh signal recogniti 95.6 0.051 1.1E-06 59.3 9.3 92 178-271 98-192 (428)
290 PRK11034 clpA ATP-dependent Cl 95.6 0.022 4.9E-07 66.8 6.9 45 159-203 459-512 (758)
291 TIGR02238 recomb_DMC1 meiotic 95.6 0.11 2.4E-06 54.4 11.4 60 178-238 95-157 (313)
292 PF00485 PRK: Phosphoribulokin 95.6 0.099 2.1E-06 51.0 10.3 82 181-265 1-87 (194)
293 PRK06067 flagellar accessory p 95.5 0.083 1.8E-06 53.3 10.0 88 178-271 24-130 (234)
294 cd00544 CobU Adenosylcobinamid 95.5 0.026 5.6E-07 53.3 5.8 79 182-270 2-82 (169)
295 PLN03187 meiotic recombination 95.5 0.11 2.4E-06 54.9 10.9 60 178-238 125-187 (344)
296 COG1102 Cmk Cytidylate kinase 95.5 0.025 5.4E-07 51.3 5.1 45 181-239 2-46 (179)
297 PHA00729 NTP-binding motif con 95.5 0.02 4.4E-07 56.1 5.1 34 170-203 8-41 (226)
298 PTZ00088 adenylate kinase 1; P 95.5 0.014 3E-07 58.2 3.9 23 181-203 8-30 (229)
299 TIGR02236 recomb_radA DNA repa 95.5 0.099 2.1E-06 55.3 10.7 59 178-237 94-155 (310)
300 KOG0652 26S proteasome regulat 95.5 0.26 5.6E-06 48.3 12.2 53 151-203 162-229 (424)
301 COG4608 AppF ABC-type oligopep 95.4 0.069 1.5E-06 53.3 8.7 92 178-273 38-139 (268)
302 PRK10463 hydrogenase nickel in 95.4 0.073 1.6E-06 54.4 9.1 34 170-203 95-128 (290)
303 PLN03186 DNA repair protein RA 95.4 0.11 2.3E-06 55.1 10.7 60 178-238 122-184 (342)
304 COG1618 Predicted nucleotide k 95.4 0.018 4E-07 52.1 4.1 25 179-203 5-29 (179)
305 PF13238 AAA_18: AAA domain; P 95.4 0.013 2.8E-07 52.8 3.3 22 182-203 1-22 (129)
306 PLN00020 ribulose bisphosphate 95.4 0.046 9.9E-07 57.2 7.5 27 177-203 146-172 (413)
307 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.019 4E-07 55.5 4.5 23 181-203 1-23 (183)
308 cd03214 ABC_Iron-Siderophores_ 95.4 0.046 1E-06 52.6 7.3 120 178-302 24-160 (180)
309 PRK13531 regulatory ATPase Rav 95.4 0.023 5E-07 62.0 5.6 44 158-203 20-63 (498)
310 KOG0727 26S proteasome regulat 95.4 0.2 4.3E-06 48.7 11.2 45 159-203 156-213 (408)
311 KOG0735 AAA+-type ATPase [Post 95.4 0.33 7.1E-06 54.5 14.2 173 159-358 668-872 (952)
312 COG2607 Predicted ATPase (AAA+ 95.4 0.089 1.9E-06 51.1 8.7 46 158-203 60-109 (287)
313 PRK11889 flhF flagellar biosyn 95.4 0.079 1.7E-06 56.2 9.2 89 178-271 240-330 (436)
314 PRK05800 cobU adenosylcobinami 95.3 0.0083 1.8E-07 56.8 1.8 24 180-203 2-25 (170)
315 cd03246 ABCC_Protease_Secretio 95.3 0.029 6.3E-07 53.6 5.6 26 178-203 27-52 (173)
316 cd03247 ABCC_cytochrome_bd The 95.3 0.048 1E-06 52.3 7.1 26 178-203 27-52 (178)
317 cd03216 ABC_Carb_Monos_I This 95.3 0.02 4.4E-07 54.0 4.3 115 178-302 25-144 (163)
318 cd03223 ABCD_peroxisomal_ALDP 95.3 0.063 1.4E-06 50.9 7.7 116 178-303 26-151 (166)
319 TIGR00064 ftsY signal recognit 95.3 0.1 2.2E-06 53.7 9.7 90 178-271 71-164 (272)
320 PRK08233 hypothetical protein; 95.3 0.016 3.5E-07 55.9 3.7 25 179-203 3-27 (182)
321 PRK04301 radA DNA repair and r 95.3 0.14 3E-06 54.3 11.1 58 178-237 101-162 (317)
322 PRK09270 nucleoside triphospha 95.3 0.027 5.8E-07 56.6 5.3 27 177-203 31-57 (229)
323 PRK04328 hypothetical protein; 95.3 0.078 1.7E-06 53.9 8.7 54 178-237 22-75 (249)
324 COG0468 RecA RecA/RadA recombi 95.3 0.084 1.8E-06 53.8 8.8 89 178-271 59-151 (279)
325 cd02019 NK Nucleoside/nucleoti 95.2 0.016 3.5E-07 45.5 2.9 23 181-203 1-23 (69)
326 PTZ00035 Rad51 protein; Provis 95.2 0.19 4.1E-06 53.4 11.8 58 178-237 117-178 (337)
327 KOG0739 AAA+-type ATPase [Post 95.2 4 8.6E-05 41.3 20.3 90 159-272 134-236 (439)
328 PRK07667 uridine kinase; Provi 95.2 0.028 6.1E-07 54.7 5.2 36 168-203 4-41 (193)
329 PF13306 LRR_5: Leucine rich r 95.2 0.065 1.4E-06 48.2 7.2 102 536-647 8-111 (129)
330 COG5238 RNA1 Ran GTPase-activa 95.2 0.022 4.7E-07 56.0 4.1 14 562-575 89-102 (388)
331 PF13671 AAA_33: AAA domain; P 95.1 0.019 4.1E-07 52.9 3.6 23 181-203 1-23 (143)
332 TIGR00390 hslU ATP-dependent p 95.1 0.049 1.1E-06 58.3 6.8 46 158-203 12-71 (441)
333 cd03222 ABC_RNaseL_inhibitor T 95.1 0.032 6.9E-07 53.2 5.0 26 178-203 24-49 (177)
334 cd03228 ABCC_MRP_Like The MRP 95.1 0.059 1.3E-06 51.3 6.9 26 178-203 27-52 (171)
335 PRK05480 uridine/cytidine kina 95.1 0.021 4.6E-07 56.5 3.9 27 177-203 4-30 (209)
336 TIGR02858 spore_III_AA stage I 95.1 0.14 3E-06 52.4 9.8 126 168-302 99-231 (270)
337 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.15 3.3E-06 51.2 10.1 40 178-220 19-58 (229)
338 PF13306 LRR_5: Leucine rich r 95.0 0.088 1.9E-06 47.3 7.6 113 519-642 13-129 (129)
339 TIGR00554 panK_bact pantothena 95.0 0.16 3.4E-06 52.5 10.1 27 177-203 60-86 (290)
340 COG1428 Deoxynucleoside kinase 95.0 0.021 4.5E-07 54.5 3.3 49 179-233 4-52 (216)
341 PF13481 AAA_25: AAA domain; P 95.0 0.085 1.9E-06 51.4 7.8 43 179-221 32-81 (193)
342 PRK12726 flagellar biosynthesi 94.9 0.14 3E-06 54.2 9.6 89 178-271 205-295 (407)
343 PTZ00301 uridine kinase; Provi 94.9 0.024 5.1E-07 55.7 3.7 25 179-203 3-27 (210)
344 PRK12723 flagellar biosynthesi 94.9 0.12 2.7E-06 55.6 9.4 90 178-271 173-264 (388)
345 PF10236 DAP3: Mitochondrial r 94.9 0.85 1.8E-05 47.9 15.5 49 311-359 258-306 (309)
346 PRK06762 hypothetical protein; 94.9 0.025 5.3E-07 53.7 3.7 25 179-203 2-26 (166)
347 PRK14527 adenylate kinase; Pro 94.9 0.037 8E-07 53.8 5.0 26 178-203 5-30 (191)
348 PRK06217 hypothetical protein; 94.9 0.042 9.1E-07 53.0 5.3 23 181-203 3-25 (183)
349 cd01129 PulE-GspE PulE/GspE Th 94.9 0.051 1.1E-06 55.6 6.1 105 161-278 62-166 (264)
350 COG2884 FtsE Predicted ATPase 94.8 0.14 2.9E-06 48.1 8.0 124 178-306 27-203 (223)
351 TIGR00235 udk uridine kinase. 94.8 0.026 5.7E-07 55.7 3.7 26 178-203 5-30 (207)
352 PRK03839 putative kinase; Prov 94.8 0.023 5.1E-07 54.7 3.3 23 181-203 2-24 (180)
353 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.064 1.4E-06 49.4 6.1 102 178-302 25-129 (144)
354 cd03230 ABC_DR_subfamily_A Thi 94.8 0.037 8.1E-07 52.8 4.7 26 178-203 25-50 (173)
355 KOG2035 Replication factor C, 94.8 0.83 1.8E-05 45.6 13.7 209 159-385 14-261 (351)
356 TIGR00150 HI0065_YjeE ATPase, 94.8 0.058 1.3E-06 48.3 5.4 38 166-203 7-46 (133)
357 PRK14974 cell division protein 94.8 0.21 4.6E-06 52.7 10.5 90 178-271 139-232 (336)
358 PF07728 AAA_5: AAA domain (dy 94.8 0.068 1.5E-06 48.9 6.1 42 182-229 2-43 (139)
359 PRK12724 flagellar biosynthesi 94.8 0.11 2.4E-06 55.9 8.3 25 179-203 223-247 (432)
360 PRK07132 DNA polymerase III su 94.7 1 2.2E-05 46.9 15.2 167 167-361 5-184 (299)
361 PF00154 RecA: recA bacterial 94.7 0.12 2.5E-06 53.9 8.2 87 178-272 52-142 (322)
362 PF00560 LRR_1: Leucine Rich R 94.7 0.019 4E-07 33.5 1.4 22 566-590 1-22 (22)
363 PF00910 RNA_helicase: RNA hel 94.7 0.022 4.8E-07 49.4 2.5 22 182-203 1-22 (107)
364 cd02025 PanK Pantothenate kina 94.7 0.15 3.2E-06 50.7 8.8 23 181-203 1-23 (220)
365 PRK12678 transcription termina 94.7 0.065 1.4E-06 59.2 6.5 90 178-271 415-513 (672)
366 TIGR01360 aden_kin_iso1 adenyl 94.6 0.029 6.3E-07 54.4 3.5 26 178-203 2-27 (188)
367 PRK08533 flagellar accessory p 94.6 0.19 4.1E-06 50.4 9.4 53 178-236 23-75 (230)
368 PRK05201 hslU ATP-dependent pr 94.6 0.087 1.9E-06 56.5 7.1 46 158-203 15-74 (443)
369 PRK11823 DNA repair protein Ra 94.6 0.1 2.2E-06 57.9 8.0 54 178-237 79-132 (446)
370 KOG1532 GTPase XAB1, interacts 94.6 0.037 8E-07 54.5 3.9 62 178-240 18-88 (366)
371 COG1066 Sms Predicted ATP-depe 94.6 0.21 4.4E-06 52.7 9.5 95 167-271 79-178 (456)
372 PRK13765 ATP-dependent proteas 94.5 0.071 1.5E-06 61.2 6.8 74 158-236 31-104 (637)
373 PF07726 AAA_3: ATPase family 94.5 0.024 5.2E-07 49.8 2.4 28 182-212 2-29 (131)
374 COG1419 FlhF Flagellar GTP-bin 94.5 0.26 5.7E-06 52.3 10.4 88 178-270 202-290 (407)
375 PF01583 APS_kinase: Adenylyls 94.5 0.037 8E-07 51.0 3.7 25 179-203 2-26 (156)
376 PRK05703 flhF flagellar biosyn 94.5 0.12 2.6E-06 56.8 8.2 87 179-270 221-308 (424)
377 PRK04040 adenylate kinase; Pro 94.5 0.034 7.4E-07 53.7 3.6 25 179-203 2-26 (188)
378 cd03229 ABC_Class3 This class 94.5 0.049 1.1E-06 52.3 4.6 26 178-203 25-50 (178)
379 PF12775 AAA_7: P-loop contain 94.5 0.066 1.4E-06 55.0 5.8 88 168-271 23-110 (272)
380 PRK05973 replicative DNA helic 94.4 0.25 5.5E-06 49.3 9.6 49 178-231 63-111 (237)
381 COG3640 CooC CO dehydrogenase 94.4 0.066 1.4E-06 51.9 5.3 42 181-224 2-43 (255)
382 PRK00625 shikimate kinase; Pro 94.4 0.035 7.5E-07 52.8 3.4 23 181-203 2-24 (173)
383 TIGR00708 cobA cob(I)alamin ad 94.4 0.15 3.2E-06 48.0 7.4 117 179-300 5-140 (173)
384 TIGR03575 selen_PSTK_euk L-ser 94.4 0.12 2.6E-06 54.5 7.6 22 182-203 2-23 (340)
385 COG0465 HflB ATP-dependent Zn 94.4 0.4 8.7E-06 53.9 12.1 174 158-358 150-357 (596)
386 COG4133 CcmA ABC-type transpor 94.4 0.15 3.3E-06 47.7 7.3 26 178-203 27-52 (209)
387 cd01135 V_A-ATPase_B V/A-type 94.4 0.2 4.4E-06 50.7 8.9 95 178-272 68-177 (276)
388 COG2274 SunT ABC-type bacterio 94.4 0.11 2.5E-06 60.4 8.0 27 177-203 497-523 (709)
389 TIGR02868 CydC thiol reductant 94.3 0.15 3.2E-06 58.5 9.0 27 177-203 359-385 (529)
390 PRK14721 flhF flagellar biosyn 94.3 0.22 4.8E-06 54.1 9.6 61 178-239 190-251 (420)
391 KOG0736 Peroxisome assembly fa 94.3 0.22 4.7E-06 56.5 9.6 92 158-272 672-775 (953)
392 PF03308 ArgK: ArgK protein; 94.3 0.081 1.8E-06 52.5 5.7 60 167-227 15-76 (266)
393 PF00006 ATP-synt_ab: ATP synt 94.3 0.13 2.9E-06 50.5 7.2 89 178-271 14-115 (215)
394 PRK05439 pantothenate kinase; 94.3 0.33 7.2E-06 50.5 10.4 27 177-203 84-110 (311)
395 PRK00279 adk adenylate kinase; 94.3 0.063 1.4E-06 53.3 5.1 23 181-203 2-24 (215)
396 TIGR00764 lon_rel lon-related 94.3 0.15 3.2E-06 58.8 8.6 74 158-236 18-91 (608)
397 KOG3347 Predicted nucleotide k 94.2 0.069 1.5E-06 47.7 4.5 71 179-262 7-77 (176)
398 PF00158 Sigma54_activat: Sigm 94.2 0.075 1.6E-06 50.2 5.1 44 160-203 1-46 (168)
399 PRK06002 fliI flagellum-specif 94.2 0.15 3.2E-06 55.6 7.9 89 178-271 164-264 (450)
400 COG0541 Ffh Signal recognition 94.2 2.4 5.1E-05 45.5 16.4 58 178-239 99-158 (451)
401 TIGR00416 sms DNA repair prote 94.2 0.17 3.8E-06 56.0 8.7 50 168-220 81-132 (454)
402 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.059 1.3E-06 50.5 4.4 117 178-303 24-143 (157)
403 PRK08972 fliI flagellum-specif 94.2 0.087 1.9E-06 57.1 6.1 90 178-272 161-263 (444)
404 KOG0729 26S proteasome regulat 94.1 0.26 5.6E-06 48.4 8.5 45 159-203 178-235 (435)
405 PF06309 Torsin: Torsin; Inte 94.1 0.1 2.2E-06 45.8 5.3 45 159-203 26-77 (127)
406 TIGR01351 adk adenylate kinase 94.1 0.067 1.5E-06 52.9 4.8 22 182-203 2-23 (210)
407 PF00625 Guanylate_kin: Guanyl 94.1 0.074 1.6E-06 51.3 5.0 37 179-218 2-38 (183)
408 TIGR01420 pilT_fam pilus retra 94.1 0.074 1.6E-06 56.9 5.4 92 178-278 121-212 (343)
409 PRK09519 recA DNA recombinatio 94.0 0.16 3.5E-06 59.1 8.4 86 178-271 59-148 (790)
410 PF13086 AAA_11: AAA domain; P 94.0 0.095 2.1E-06 52.7 6.0 66 166-233 6-75 (236)
411 PRK00131 aroK shikimate kinase 94.0 0.048 1E-06 52.1 3.6 25 179-203 4-28 (175)
412 cd02023 UMPK Uridine monophosp 94.0 0.037 8.1E-07 54.2 2.8 23 181-203 1-23 (198)
413 cd02024 NRK1 Nicotinamide ribo 94.0 0.039 8.5E-07 52.9 2.8 23 181-203 1-23 (187)
414 PF08433 KTI12: Chromatin asso 94.0 0.13 2.8E-06 52.6 6.8 24 180-203 2-25 (270)
415 PF06745 KaiC: KaiC; InterPro 94.0 0.051 1.1E-06 54.5 3.8 88 178-271 18-125 (226)
416 PRK08927 fliI flagellum-specif 94.0 0.22 4.7E-06 54.3 8.7 89 178-271 157-258 (442)
417 COG1703 ArgK Putative periplas 94.0 0.093 2E-06 52.9 5.4 62 168-230 38-101 (323)
418 PF13245 AAA_19: Part of AAA d 93.9 0.13 2.9E-06 41.2 5.3 26 178-203 9-34 (76)
419 TIGR02322 phosphon_PhnN phosph 93.9 0.05 1.1E-06 52.3 3.4 24 180-203 2-25 (179)
420 PRK12597 F0F1 ATP synthase sub 93.9 0.12 2.7E-06 56.6 6.7 92 178-271 142-247 (461)
421 COG0467 RAD55 RecA-superfamily 93.9 0.073 1.6E-06 54.7 4.8 53 178-236 22-74 (260)
422 PRK14528 adenylate kinase; Pro 93.9 0.088 1.9E-06 50.9 5.0 24 180-203 2-25 (186)
423 COG1936 Predicted nucleotide k 93.8 0.046 9.9E-07 50.4 2.8 20 181-200 2-21 (180)
424 TIGR01425 SRP54_euk signal rec 93.8 0.27 5.8E-06 53.5 9.1 26 178-203 99-124 (429)
425 PF03205 MobB: Molybdopterin g 93.8 0.085 1.8E-06 48.1 4.5 39 180-220 1-39 (140)
426 PRK10416 signal recognition pa 93.8 0.36 7.8E-06 50.8 9.7 26 178-203 113-138 (318)
427 cd00227 CPT Chloramphenicol (C 93.8 0.058 1.3E-06 51.6 3.6 24 180-203 3-26 (175)
428 COG0003 ArsA Predicted ATPase 93.8 0.099 2.1E-06 54.6 5.5 49 179-230 2-50 (322)
429 cd02020 CMPK Cytidine monophos 93.8 0.047 1E-06 50.4 2.9 23 181-203 1-23 (147)
430 PRK06995 flhF flagellar biosyn 93.7 0.25 5.4E-06 54.6 8.7 59 179-238 256-315 (484)
431 TIGR02655 circ_KaiC circadian 93.7 0.32 7E-06 54.8 9.9 97 168-270 250-362 (484)
432 COG1124 DppF ABC-type dipeptid 93.7 0.082 1.8E-06 51.7 4.4 26 178-203 32-57 (252)
433 TIGR03498 FliI_clade3 flagella 93.7 0.13 2.8E-06 55.9 6.4 91 178-272 139-241 (418)
434 PF08477 Miro: Miro-like prote 93.7 0.058 1.3E-06 47.7 3.2 22 182-203 2-23 (119)
435 cd02021 GntK Gluconate kinase 93.7 0.049 1.1E-06 50.6 2.8 23 181-203 1-23 (150)
436 PRK00889 adenylylsulfate kinas 93.7 0.068 1.5E-06 51.1 3.9 26 178-203 3-28 (175)
437 PRK14529 adenylate kinase; Pro 93.7 0.23 5.1E-06 49.1 7.6 83 181-272 2-87 (223)
438 PRK13947 shikimate kinase; Pro 93.7 0.058 1.3E-06 51.4 3.3 23 181-203 3-25 (171)
439 PRK13949 shikimate kinase; Pro 93.6 0.06 1.3E-06 51.0 3.4 23 181-203 3-25 (169)
440 KOG0738 AAA+-type ATPase [Post 93.6 0.48 1E-05 49.5 9.9 44 160-203 214-269 (491)
441 cd01136 ATPase_flagellum-secre 93.6 0.3 6.5E-06 51.2 8.7 89 178-271 68-169 (326)
442 PRK08149 ATP synthase SpaL; Va 93.6 0.29 6.2E-06 53.3 8.8 89 178-271 150-251 (428)
443 PF13504 LRR_7: Leucine rich r 93.6 0.053 1.1E-06 29.3 1.6 16 592-607 2-17 (17)
444 PRK05922 type III secretion sy 93.6 0.17 3.7E-06 54.9 7.1 90 178-272 156-258 (434)
445 COG1224 TIP49 DNA helicase TIP 93.6 0.16 3.5E-06 52.2 6.3 54 157-211 38-96 (450)
446 TIGR00073 hypB hydrogenase acc 93.5 0.087 1.9E-06 52.0 4.4 31 173-203 16-46 (207)
447 PRK15453 phosphoribulokinase; 93.5 0.4 8.7E-06 48.7 9.0 26 178-203 4-29 (290)
448 COG0542 clpA ATP-binding subun 93.5 0.083 1.8E-06 61.0 4.7 156 159-330 171-346 (786)
449 PRK14531 adenylate kinase; Pro 93.5 0.12 2.6E-06 49.9 5.2 24 180-203 3-26 (183)
450 cd02028 UMPK_like Uridine mono 93.5 0.056 1.2E-06 51.9 2.9 23 181-203 1-23 (179)
451 TIGR02030 BchI-ChlI magnesium 93.5 0.11 2.5E-06 54.9 5.4 46 158-203 4-49 (337)
452 PHA02244 ATPase-like protein 93.4 0.15 3.2E-06 53.9 6.0 44 158-203 96-143 (383)
453 COG3854 SpoIIIAA ncharacterize 93.4 0.24 5.1E-06 47.9 6.8 118 170-298 128-251 (308)
454 PRK10751 molybdopterin-guanine 93.4 0.077 1.7E-06 50.0 3.6 26 178-203 5-30 (173)
455 PRK14530 adenylate kinase; Pro 93.4 0.065 1.4E-06 53.2 3.3 24 180-203 4-27 (215)
456 PTZ00185 ATPase alpha subunit; 93.4 0.41 8.9E-06 52.5 9.4 94 178-272 188-300 (574)
457 cd00071 GMPK Guanosine monopho 93.4 0.07 1.5E-06 48.6 3.2 23 181-203 1-23 (137)
458 PF05970 PIF1: PIF1-like helic 93.4 0.16 3.5E-06 54.8 6.6 37 167-203 10-46 (364)
459 PRK12339 2-phosphoglycerate ki 93.3 0.08 1.7E-06 51.5 3.7 25 179-203 3-27 (197)
460 PF03193 DUF258: Protein of un 93.3 0.12 2.6E-06 48.0 4.6 35 166-203 25-59 (161)
461 PF08298 AAA_PrkA: PrkA AAA do 93.3 0.13 2.9E-06 53.6 5.4 46 158-203 61-112 (358)
462 PRK09099 type III secretion sy 93.3 0.3 6.5E-06 53.4 8.4 92 177-272 161-264 (441)
463 TIGR02902 spore_lonB ATP-depen 93.3 0.14 3.1E-06 58.1 6.1 45 158-202 65-109 (531)
464 TIGR03263 guanyl_kin guanylate 93.3 0.067 1.4E-06 51.5 3.1 24 180-203 2-25 (180)
465 PRK14723 flhF flagellar biosyn 93.3 0.33 7.1E-06 56.5 9.0 87 179-271 185-273 (767)
466 PF02374 ArsA_ATPase: Anion-tr 93.2 0.092 2E-06 55.0 4.3 41 180-223 2-42 (305)
467 cd03281 ABC_MSH5_euk MutS5 hom 93.2 0.062 1.4E-06 53.1 2.8 23 179-201 29-51 (213)
468 PRK05057 aroK shikimate kinase 93.2 0.083 1.8E-06 50.3 3.5 25 179-203 4-28 (172)
469 PRK09280 F0F1 ATP synthase sub 93.1 0.29 6.3E-06 53.5 8.0 92 178-271 143-248 (463)
470 cd01122 GP4d_helicase GP4d_hel 93.1 0.4 8.6E-06 49.6 8.9 53 178-234 29-81 (271)
471 PRK13407 bchI magnesium chelat 93.1 0.12 2.6E-06 54.6 4.9 46 158-203 8-53 (334)
472 cd00464 SK Shikimate kinase (S 93.1 0.076 1.6E-06 49.5 3.1 22 182-203 2-23 (154)
473 cd01130 VirB11-like_ATPase Typ 93.1 0.09 1.9E-06 50.9 3.7 36 167-203 14-49 (186)
474 PRK00300 gmk guanylate kinase; 93.1 0.083 1.8E-06 52.0 3.5 26 178-203 4-29 (205)
475 PF03266 NTPase_1: NTPase; In 93.1 0.076 1.6E-06 50.2 3.0 22 182-203 2-23 (168)
476 cd03213 ABCG_EPDR ABCG transpo 93.1 0.23 5E-06 48.4 6.6 26 178-203 34-59 (194)
477 PF06068 TIP49: TIP49 C-termin 93.0 0.16 3.4E-06 53.1 5.5 46 158-203 24-74 (398)
478 TIGR01313 therm_gnt_kin carboh 93.0 0.067 1.4E-06 50.5 2.7 22 182-203 1-22 (163)
479 cd01124 KaiC KaiC is a circadi 93.0 0.098 2.1E-06 50.6 3.9 45 181-230 1-45 (187)
480 cd01132 F1_ATPase_alpha F1 ATP 93.0 0.37 8E-06 48.9 8.0 90 178-272 68-172 (274)
481 COG0714 MoxR-like ATPases [Gen 93.0 0.24 5.3E-06 52.8 7.1 61 159-227 25-85 (329)
482 cd00820 PEPCK_HprK Phosphoenol 93.0 0.092 2E-06 44.9 3.1 23 178-200 14-36 (107)
483 PF13604 AAA_30: AAA domain; P 93.0 0.16 3.5E-06 49.5 5.3 35 169-203 8-42 (196)
484 PRK13948 shikimate kinase; Pro 92.9 0.1 2.3E-06 49.9 3.8 26 178-203 9-34 (182)
485 PRK10078 ribose 1,5-bisphospho 92.9 0.081 1.8E-06 51.2 3.1 24 180-203 3-26 (186)
486 PF03029 ATP_bind_1: Conserved 92.9 0.12 2.7E-06 51.8 4.5 20 184-203 1-20 (238)
487 PRK13975 thymidylate kinase; P 92.9 0.09 2E-06 51.4 3.5 24 180-203 3-26 (196)
488 TIGR01040 V-ATPase_V1_B V-type 92.9 0.4 8.6E-06 52.2 8.5 93 178-271 140-257 (466)
489 CHL00081 chlI Mg-protoporyphyr 92.9 0.14 3.1E-06 54.2 5.1 46 158-203 17-62 (350)
490 PRK14526 adenylate kinase; Pro 92.9 0.12 2.7E-06 50.8 4.4 22 182-203 3-24 (211)
491 PRK13946 shikimate kinase; Pro 92.9 0.1 2.3E-06 50.3 3.8 25 179-203 10-34 (184)
492 PRK03846 adenylylsulfate kinas 92.9 0.1 2.3E-06 51.0 3.8 27 177-203 22-48 (198)
493 COG2019 AdkA Archaeal adenylat 92.8 0.1 2.3E-06 47.6 3.3 25 179-203 4-28 (189)
494 cd02027 APSK Adenosine 5'-phos 92.8 0.08 1.7E-06 49.0 2.8 23 181-203 1-23 (149)
495 PRK06851 hypothetical protein; 92.8 1.6 3.4E-05 46.7 12.7 56 161-222 200-255 (367)
496 TIGR01650 PD_CobS cobaltochela 92.8 0.32 7E-06 50.7 7.3 44 158-203 45-88 (327)
497 PRK14737 gmk guanylate kinase; 92.7 0.11 2.3E-06 50.2 3.6 26 178-203 3-28 (186)
498 TIGR01287 nifH nitrogenase iro 92.7 0.13 2.8E-06 53.4 4.5 25 180-204 1-25 (275)
499 KOG0927 Predicted transporter 92.7 4.4 9.6E-05 44.6 15.8 249 6-296 279-563 (614)
500 PF13521 AAA_28: AAA domain; P 92.7 0.088 1.9E-06 49.7 3.0 21 182-202 2-22 (163)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-96 Score=842.85 Aligned_cols=759 Identities=41% Similarity=0.681 Sum_probs=643.4
Q ss_pred hhhhHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHhccc
Q 041248 14 FNRCLDCFLGKVANTSKLQDNLVALETELGKLIAAKNDVMMRVVNAERQQLRTLDQVQVWLSRVEAVETEADELKRHGSQ 93 (813)
Q Consensus 14 ~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~Wl~~v~~~~~~~ed~ld~~~~ 93 (813)
++++.+++.+++..+.++++++..+++++..|++++.|+ +.++. ....+..|.+.+++++|+++|+++.|..
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~-------~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDL-------DAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------Hhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688899999999999999999999999999999884 33333 2567889999999999999999999875
Q ss_pred ccc----------------ccccccccCccchhhhhHHHHHHHHHHHHHHHHHcCCcccccccccccCCCCCCCccCCCC
Q 041248 94 EID----------------KLCVGGYCSKNCASSYKFGKQVAKKLRDVQTLIDEGVFAAVATEVVPERAPEPVADERPTE 157 (813)
Q Consensus 94 ~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (813)
+.. +-|..++|.+.+...+.+++++.+.+++++.+..++.|...+.. ..+.......|..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~----~~~~~~~e~~~~~ 156 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES----LDPREKVETRPIQ 156 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc----ccchhhcccCCCC
Confidence 432 12334566666777788899999999999999888767663221 1121222222333
Q ss_pred Ccc-cchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTI-VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
+.. ||.+..++++++.|.+++..+++|+||||+||||||++++|+...++.+||.++||+||+.++...++.+|++.++
T Consensus 157 ~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 157 SESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred ccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhc
Confidence 333 9999999999999998888999999999999999999999999438999999999999999999999999999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCccccccc-CCCCcceEcC
Q 041248 237 LVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVCGS-MEADKKFQVA 315 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~~-~~~~~~~~l~ 315 (813)
...+.+.....++.+..+.+.|++|||+|||||||+..+|+.++.++ +...+||+|++|||+..||.. +++...++++
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~-p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPF-PSRENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCC-CCccCCeEEEEEeccHhhhhccccCCcccccc
Confidence 87766666667899999999999999999999999999999999999 888899999999999999988 8888999999
Q ss_pred CCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCHHHHHHHHHHHhch-hhhccCchH
Q 041248 316 CLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKTAEEWIHAIEVLRTS-ASEFAGLGE 394 (813)
Q Consensus 316 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~ 394 (813)
.|+++|||+||.+.++.......+.++++|++++++|+|+|||++++|+.|+.+++..+|+++.+.+.+. ..+.+++.+
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 9999999999999999887666677999999999999999999999999999999999999999999888 566667778
Q ss_pred HHHhHHHHhhcCCChhhHHHHHhhhccCCCCccccHHHHHHHHHHcCCccc-ccccchHhhHHHHHHHHHHhcccceec-
Q 041248 395 KVYRLLKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEE-SDRFSAENQGYYIVGTLVHACLLEEVE- 472 (813)
Q Consensus 395 ~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~-~~~~~~~~~~~~~l~~L~~~~ll~~~~- 472 (813)
.+++++.+||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.. .+....+++|+.|+.+|++++|++..+
T Consensus 396 ~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 396 SILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 999999999999996 99999999999999999999999999999999999 668889999999999999999999863
Q ss_pred ---CCcEEEeHHHHHHHHHHHhhhhcccceEEEEcCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeee
Q 041248 473 ---DDKVKMHDVVRDMALWIACEIEKEKRKFLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDF 549 (813)
Q Consensus 473 ---~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~ 549 (813)
..+|+|||+|||+|.++|++.+..++++++..+.+....|+...+..+|++++++|.+..++....+++|++|.+.+
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQR 554 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEee
Confidence 37999999999999999999988888888887777777899999999999999999999998888999999999996
Q ss_pred cc-ccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCccccc
Q 041248 550 NY-KLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLN 628 (813)
Q Consensus 550 ~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~ 628 (813)
+. .+..++..||..|+.|++|||++|. .+.++|++|++|.+||||+++++.|+.+|.++.+|.+|.+||+..+..+.
T Consensus 555 n~~~l~~is~~ff~~m~~LrVLDLs~~~--~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 555 NSDWLLEISGEFFRSLPLLRVLDLSGNS--SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred cchhhhhcCHHHHhhCcceEEEECCCCC--ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc
Confidence 55 3778899999999999999999987 78899999999999999999999999999999999999999999998777
Q ss_pred ccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhccee
Q 041248 629 KIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRS 708 (813)
Q Consensus 629 ~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 708 (813)
.+|. +...|++||+|.+...... .+...+.++.+|.+|+.+.+...+..-+..+.....+......
T Consensus 633 ~~~~-i~~~L~~Lr~L~l~~s~~~-------------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 633 SIPG-ILLELQSLRVLRLPRSALS-------------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred cccc-hhhhcccccEEEeeccccc-------------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHh
Confidence 6654 4677999999999864411 3455778889999999998876655334444444444444555
Q ss_pred eeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcc-cccCcceEeeccCcCCCcccchhcCCC
Q 041248 709 LFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPF-VFRSLHRVTMERCHKLKDLTFLVCAPS 787 (813)
Q Consensus 709 L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~l~~l~~l~~ 787 (813)
+.+.++... ... ..+..+.+|+.|.+.+|...+.. ..|... .... .|++|..+.+.+|...+.+.|....|+
T Consensus 699 l~~~~~~~~-~~~-~~~~~l~~L~~L~i~~~~~~e~~-~~~~~~----~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~ 771 (889)
T KOG4658|consen 699 LSIEGCSKR-TLI-SSLGSLGNLEELSILDCGISEIV-IEWEES----LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPH 771 (889)
T ss_pred hhhcccccc-eee-cccccccCcceEEEEcCCCchhh-cccccc----cchhhhHHHHHHHHhhccccccccchhhccCc
Confidence 555443322 222 25778999999999998876532 223220 0011 378999999999999999999989999
Q ss_pred CceEeeecCchhhhhhccCccC
Q 041248 788 LKSLSLYGCNAMEEIISVGKFA 809 (813)
Q Consensus 788 L~~L~l~~c~~l~~i~~~~~~~ 809 (813)
|+.|.+..|..+++++...++.
T Consensus 772 L~~l~l~~~~~~e~~i~~~k~~ 793 (889)
T KOG4658|consen 772 LTSLSLVSCRLLEDIIPKLKAL 793 (889)
T ss_pred ccEEEEecccccccCCCHHHHh
Confidence 9999999999999998665543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-58 Score=563.58 Aligned_cols=604 Identities=20% Similarity=0.265 Sum_probs=433.2
Q ss_pred CcccchhHHHHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe---cCc-----------
Q 041248 158 PTIVGLQSQLEQVWRCLV--EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVV---SKD----------- 221 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~---~~~----------- 221 (813)
+.+|||+..++++..++. .++.++|+|+||||+||||||+++|+.. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 568999999999999885 3578999999999999999999999987 578888877642 111
Q ss_pred cC-HHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCcc
Q 041248 222 LR-LEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFV 300 (813)
Q Consensus 222 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~ 300 (813)
+. ...+..+++..+..... ..... ...+++.++++|+||||||||+..+|+.+.... ...+.||+||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~-~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQT-QWFGSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhC-ccCCCCcEEEEEeCcH
Confidence 00 12233444443321110 01111 245677899999999999999998888886555 4557899999999999
Q ss_pred cccccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCHHHHHHHHH
Q 041248 301 DVCGSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKTAEEWIHAIE 380 (813)
Q Consensus 301 ~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~ 380 (813)
.++..++..+.|+++.|++++||+||+++||... .+++++.+++++|+++|+|+|||++++|++|++ ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9988777788999999999999999999999765 345568899999999999999999999999997 58899999999
Q ss_pred HHhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhccCCCCccccHHHHHHHHHHcCCcccccccchHhhHHHHHH
Q 041248 381 VLRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEESDRFSAENQGYYIVG 460 (813)
Q Consensus 381 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~ 460 (813)
.++... +..+..+|++||++|+++..|.||+++|+|+.++.++ .+..|++.+.... +..++
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~ 473 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLK 473 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChH
Confidence 887643 3489999999999998745899999999999887654 4677888765432 12388
Q ss_pred HHHHhcccceecCCcEEEeHHHHHHHHHHHhhhhc--ccceEEEEcC---------C-------------ccC-------
Q 041248 461 TLVHACLLEEVEDDKVKMHDVVRDMALWIACEIEK--EKRKFLVCSG---------A-------------GVG------- 509 (813)
Q Consensus 461 ~L~~~~ll~~~~~~~~~mHdlv~~~a~~~~~~~~~--~~~~~~~~~~---------~-------------~~~------- 509 (813)
.|+++||++.. ...+.|||++|++|++++++... .+..++.... . ...
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 99999999875 46799999999999999876421 1112221100 0 000
Q ss_pred --------------------------cCCC-ccC-ccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhh
Q 041248 510 --------------------------AVPD-VEG-WENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFF 561 (813)
Q Consensus 510 --------------------------~~~~-~~~-~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 561 (813)
.+|. ... ...+|.|.+.++.+..+|....+.+|+.|++. ++.+..++.+ +
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~-~s~l~~L~~~-~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQ-GSKLEKLWDG-V 630 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECc-Cccccccccc-c
Confidence 0000 000 13467777777777777765677899999998 5567778776 6
Q ss_pred cCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCC-CCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCC
Q 041248 562 QCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHA-GIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSW 640 (813)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~ 640 (813)
..+++|++|+|+++. .+..+| .++.+++|++|+|++| .+..+|.+++++++|++|++++|..+..+|.+ + ++++
T Consensus 631 ~~l~~Lk~L~Ls~~~--~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~s 705 (1153)
T PLN03210 631 HSLTGLRNIDLRGSK--NLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKS 705 (1153)
T ss_pred ccCCCCCEEECCCCC--CcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCC
Confidence 789999999999875 566777 5888999999999987 67889999999999999999999888899986 4 7888
Q ss_pred CceeeccccccC-CCCC--CCcc-ccccCCccchhHHhhcC-------------------------------CCCcEEEE
Q 041248 641 LRVLRMFAIGFE-NSEE--PSED-SVLIGGGEVLVHELLGL-------------------------------RYLEVLEL 685 (813)
Q Consensus 641 L~~L~l~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~l~~L-------------------------------~~L~~L~l 685 (813)
|++|++++|... .++. .++. ..+.......+.....+ ++|+.|++
T Consensus 706 L~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred CCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 999888876422 1111 0000 00000000000000012 34455555
Q ss_pred EEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCcccee----------eecccccCCC
Q 041248 686 TLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEEL----------KVDYTEIAPK 755 (813)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l----------~~~~~~~~~~ 755 (813)
+.|.. +..++.....+++|+.|++++|..+..++. .+ ++++|+.|++++|..++.+ .+..+.+...
T Consensus 786 s~n~~--l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~-~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~i 861 (1153)
T PLN03210 786 SDIPS--LVELPSSIQNLHKLEHLEIENCINLETLPT-GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV 861 (1153)
T ss_pred CCCCC--ccccChhhhCCCCCCEEECCCCCCcCeeCC-CC-CccccCEEECCCCCccccccccccccCEeECCCCCCccC
Confidence 43321 111222233455788888888877777763 22 6788888888888665432 2222222233
Q ss_pred CCCcccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCchhhhhh
Q 041248 756 RSEPFVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNAMEEII 803 (813)
Q Consensus 756 ~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~ 803 (813)
|.....+++|+.|++++|+.++.+| ....+++|+.|++++|.+|+.+.
T Consensus 862 P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 4444678999999999999999998 46789999999999999998764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.7e-44 Score=376.81 Aligned_cols=280 Identities=38% Similarity=0.657 Sum_probs=231.6
Q ss_pred hhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCC
Q 041248 163 LQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDD 240 (813)
Q Consensus 163 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 240 (813)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++. ....+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 689999999999999999999999985 357899999999999999999999999999987754
Q ss_pred cc-CCCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCcccccccCCC-CcceEcCCCC
Q 041248 241 SW-KSKSVEEKALDIFRSLREKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVCGSMEA-DKKFQVACLS 318 (813)
Q Consensus 241 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~~~~~-~~~~~l~~L~ 318 (813)
.. ...+.++....+.+.+.++++|+||||||+...|+.+...+ +....+++||||||+..++..+.. ...|++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~-~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPL-PSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH--------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 43 56678889999999999999999999999999998887776 666779999999999998877654 6789999999
Q ss_pred HHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCHHHHHHHHHHHhchhhhccCchHHHHh
Q 041248 319 EEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKTAEEWIHAIEVLRTSASEFAGLGEKVYR 398 (813)
Q Consensus 319 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~ 398 (813)
+++|++||.+.++.......+..++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999986542233455678999999999999999999999976567789999998887776554445579999
Q ss_pred HHHHhhcCCChhhHHHHHhhhccCCCCccccHHHHHHHHHHcCCccc
Q 041248 399 LLKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEE 445 (813)
Q Consensus 399 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 445 (813)
++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++||+..
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999 89999999999999999999999999999999976
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=4.8e-17 Score=200.26 Aligned_cols=269 Identities=22% Similarity=0.312 Sum_probs=184.6
Q ss_pred CccceeEEeccccccc-------ccc-cCCCC-CceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCcc
Q 041248 516 GWENVRRLSLMQNQIE-------ILS-EVPTC-PHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFG 586 (813)
Q Consensus 516 ~~~~~~~l~l~~~~~~-------~l~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~ 586 (813)
+.++++.|.+..+... .+| .+..+ ++||.|.+. .+.+..+|.. | .+.+|+.|++++| .+..+|..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~-~~~l~~lP~~-f-~~~~L~~L~L~~s---~l~~L~~~ 629 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD-KYPLRCMPSN-F-RPENLVKLQMQGS---KLEKLWDG 629 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEec-CCCCCCCCCc-C-CccCCcEEECcCc---cccccccc
Confidence 4678888888654321 122 23333 469999998 5567888887 4 5789999999999 89999999
Q ss_pred ccCCCCCCEEeecCC-CCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccc-cCCCCCCCccc-cc
Q 041248 587 MSKLGSLQLLDISHA-GIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIG-FENSEEPSEDS-VL 663 (813)
Q Consensus 587 i~~L~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~-~~ 663 (813)
+..+++|++|+|++| .++.+| .++.+++|++|++++|..+..+|.. ++++++|++|++.+|. ...++.. +.. .+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~-i~l~sL 706 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTG-INLKSL 706 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCc-CCCCCC
Confidence 999999999999987 578888 4889999999999999889999997 9999999999999753 3333321 100 00
Q ss_pred cCC---ccchhHHhh-cCCCCcEEEEEEcchhhHHhhhcc---------------------------hhhhhcceeeeec
Q 041248 664 IGG---GEVLVHELL-GLRYLEVLELTLRSYDALQFFLSS---------------------------NKLKSCIRSLFLN 712 (813)
Q Consensus 664 ~~~---~~~~~~~l~-~L~~L~~L~l~~~~~~~~~~~~~~---------------------------~~~~~~L~~L~l~ 712 (813)
... +...+..+. ..++|+.|++..+.+..++..... ....++|+.|+++
T Consensus 707 ~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 000 001111221 134677787777665443321100 0112467788888
Q ss_pred ccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcC-----------------
Q 041248 713 KLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHK----------------- 775 (813)
Q Consensus 713 ~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~----------------- 775 (813)
+|+.+..++. .+.++++|+.|+|++|..++.+.... .+++|+.|++++|..
T Consensus 787 ~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-----------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls 854 (1153)
T PLN03210 787 DIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI-----------NLESLESLDLSGCSRLRTFPDISTNISDLNLS 854 (1153)
T ss_pred CCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-----------CccccCEEECCCCCccccccccccccCEeECC
Confidence 8776666664 57888999999999998887652211 344455555555444
Q ss_pred ---CCccc-chhcCCCCceEeeecCchhhhhhcc
Q 041248 776 ---LKDLT-FLVCAPSLKSLSLYGCNAMEEIISV 805 (813)
Q Consensus 776 ---l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~ 805 (813)
++.+| ++..+++|+.|++++|++++.+...
T Consensus 855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred CCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 44455 4567899999999999999987654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.71 E-value=4.7e-17 Score=200.38 Aligned_cols=198 Identities=24% Similarity=0.261 Sum_probs=106.1
Q ss_pred ccceeEEecccccccccccCCCCCceeEEEeeeccccc-cccchhhcCCCcccEEEeccCCccccc-ccCccccCCCCCC
Q 041248 517 WENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLE-MITDGFFQCMPSLKVLKMSNCGHVKVL-KLPFGMSKLGSLQ 594 (813)
Q Consensus 517 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~-~lp~~i~~L~~L~ 594 (813)
..++++|++++|.+........+++|++|++++| .+. .+|.. +..+++|++|++++| .+. .+|..++++++|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n---~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGN---VLVGKIPNSLTNLTSLE 191 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccC---cccccCChhhhhCcCCC
Confidence 4456666666665543222344566666666633 333 33433 666666677776666 443 4566666666677
Q ss_pred EEeecCCCCc-ccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHH
Q 041248 595 LLDISHAGIR-ELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHE 673 (813)
Q Consensus 595 ~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (813)
+|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+. .+..
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~---------------~p~~ 255 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGP---------------IPSS 255 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccc---------------cChh
Confidence 7776666554 45666666666677766666443455655 66666677766666554432 1234
Q ss_pred hhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecc
Q 041248 674 LLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRS 738 (813)
Q Consensus 674 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~ 738 (813)
++++++|+.|+++.|..... .......+++|+.|++++|.....++ ..+.++++|+.|++++
T Consensus 256 l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFS 317 (968)
T ss_pred HhCCCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCC
Confidence 55556666666655443210 01111123355555555543222222 1344555555555554
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=5.8e-17 Score=199.51 Aligned_cols=257 Identities=21% Similarity=0.221 Sum_probs=142.7
Q ss_pred ccceeEEeccccccc-cccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccc-ccCccccCCCC
Q 041248 517 WENVRRLSLMQNQIE-ILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVL-KLPFGMSKLGS 592 (813)
Q Consensus 517 ~~~~~~l~l~~~~~~-~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~lp~~i~~L~~ 592 (813)
.+.++.|++++|.+. .+|. +..+++|++|++++|.....+|. ..+++|++|++++| .+. .+|..++++.+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n---~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNN---MLSGEIPNDIGSFSS 165 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCC---cccccCChHHhcCCC
Confidence 345555555555543 2322 22455555555553322222332 23455555555555 333 44555666666
Q ss_pred CCEEeecCCCCc-ccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchh
Q 041248 593 LQLLDISHAGIR-ELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLV 671 (813)
Q Consensus 593 L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (813)
|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+ ..+
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---------------~~p 229 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG---------------EIP 229 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCC---------------cCC
Confidence 666666666543 45555666666666666666433445554 5666666666666554432 233
Q ss_pred HHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCc----------
Q 041248 672 HELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVE---------- 741 (813)
Q Consensus 672 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~---------- 741 (813)
..++++++|+.|+++.|.... .+......+++|+.|.+++|.-...++ ..+.++++|+.|++++|.-
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred hhHhcCCCCCEEECcCceecc--ccChhHhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 567888899999988776542 112222334588889988864433333 2567788999999887532
Q ss_pred ---cceeeecccccCCCC-CCcccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCch
Q 041248 742 ---LEELKVDYTEIAPKR-SEPFVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNA 798 (813)
Q Consensus 742 ---l~~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~ 798 (813)
++.+.+......+.. .....+++|+.|++++|.....+| .++.+++|+.|++++|.-
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 222222222211112 223456777777777776555566 466777777777776643
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=2e-18 Score=180.40 Aligned_cols=248 Identities=21% Similarity=0.246 Sum_probs=152.4
Q ss_pred ceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCE
Q 041248 519 NVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQL 595 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~ 595 (813)
.+.+|.+.+|.|+.+. .|.++.+|.+|.++ ++.+..+|...|+.+++|+.|+|..| .|... -..+..|..|+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs-rNrittLp~r~Fk~L~~L~~LdLnrN---~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLS-RNRITTLPQRSFKRLPKLESLDLNRN---RIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecc-cCcccccCHHHhhhcchhhhhhcccc---ceeeehhhhhcCchhhhh
Confidence 4556666666665542 24555566666666 55566666655666666666666666 44433 234555666666
Q ss_pred EeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHh
Q 041248 596 LDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHEL 674 (813)
Q Consensus 596 L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 674 (813)
|.|..|+|..|-.+ |..|.++++|+|..| .+..+..+.+-+|++|+.|+++.|.+.++. +...
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih---------------~d~W 313 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIH---------------IDSW 313 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheee---------------cchh
Confidence 66666666655443 455666666666666 455555555666666666666666655442 2344
Q ss_pred hcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCC
Q 041248 675 LGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAP 754 (813)
Q Consensus 675 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 754 (813)
.-.++|+.|+++.|.+..++.- ....+..|+.|+|+. +.+..+.-..|..+++|++|+|+. +.+.. .++..+
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~--sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~-N~ls~-~IEDaa--- 385 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEG--SFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRS-NELSW-CIEDAA--- 385 (873)
T ss_pred hhcccceeEeccccccccCChh--HHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcC-CeEEE-EEecch---
Confidence 5566777777777776655432 122234677777777 345555444567788888888876 33332 222211
Q ss_pred CCCCcccccCcceEeeccCcCCCccc--chhcCCCCceEeeecCc
Q 041248 755 KRSEPFVFRSLHRVTMERCHKLKDLT--FLVCAPSLKSLSLYGCN 797 (813)
Q Consensus 755 ~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 797 (813)
.....+++|++|.+.++ +++.+| -+..+++|++|++.+.+
T Consensus 386 --~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 386 --VAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred --hhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc
Confidence 11236999999999995 699999 57789999999998765
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=5.1e-19 Score=185.70 Aligned_cols=149 Identities=20% Similarity=0.307 Sum_probs=115.9
Q ss_pred eEEEEcCCccCcCCC-ccCccceeEEecccccccccc-cCCCCCceeEEEeeeccc-cccccchhhcCCCcccEEEeccC
Q 041248 499 KFLVCSGAGVGAVPD-VEGWENVRRLSLMQNQIEILS-EVPTCPHLLTLFLDFNYK-LEMITDGFFQCMPSLKVLKMSNC 575 (813)
Q Consensus 499 ~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~ 575 (813)
.|+......+..+|. .....++.||++.+|.+..+. .++.+|.||++++.+|+- -..+|.. +-.|..|.+||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh
Confidence 455555555555553 234567889999998887753 478889999998884431 2347887 446889999999999
Q ss_pred CcccccccCccccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 576 GHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 576 ~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
.+.+.|..+.+-+++-.|+|++|+|..+|.+ +.+|+-|-+||||+| .+..+|+. +.+|..|++|.+++|....
T Consensus 114 ---qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 114 ---QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred ---hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH
Confidence 8889998888888899999999999999977 568888899999988 68889987 8999999999998876543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.68 E-value=1.6e-18 Score=181.97 Aligned_cols=255 Identities=21% Similarity=0.270 Sum_probs=171.8
Q ss_pred CCccCccceeEEeccccccccccc-CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCC
Q 041248 512 PDVEGWENVRRLSLMQNQIEILSE-VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKL 590 (813)
Q Consensus 512 ~~~~~~~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L 590 (813)
+++.....+..|++++|.+.+.|. +...+++-+|+++ +++++.||...|-++..|-+||||+| .++.+|+.+..|
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS-~N~IetIPn~lfinLtDLLfLDLS~N---rLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLS-YNNIETIPNSLFINLTDLLFLDLSNN---RLEMLPPQIRRL 172 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcc-cCccccCCchHHHhhHhHhhhccccc---hhhhcCHHHHHH
Confidence 344556678888888888888764 5677888889998 67788899888888888999999998 888888888888
Q ss_pred CCCCEEeecCCCCcccc-hhhcCCCCCcEEeccCccc-ccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCcc
Q 041248 591 GSLQLLDISHAGIRELP-EELKLLVNLKCLNLRWTRM-LNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGE 668 (813)
Q Consensus 591 ~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~-l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 668 (813)
.+|++|.|++|.+..+- ..+..+++|+.|.++++.. +..+|.. +..|.||+.++++.|....+|
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~vP------------- 238 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPIVP------------- 238 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCcch-------------
Confidence 99999999888543210 1122566777777777643 3456776 777778888877766554432
Q ss_pred chhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeeccc---------
Q 041248 669 VLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSA--------- 739 (813)
Q Consensus 669 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~--------- 739 (813)
+.+.++++|+.|+++.|.+..+..-... ..+|++|+++. +.++.++. .+++++.|+.|.+.+.
T Consensus 239 ---ecly~l~~LrrLNLS~N~iteL~~~~~~---W~~lEtLNlSr-NQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 239 ---ECLYKLRNLRRLNLSGNKITELNMTEGE---WENLETLNLSR-NQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred ---HHHhhhhhhheeccCcCceeeeeccHHH---Hhhhhhhcccc-chhccchH-HHhhhHHHHHHHhccCcccccCCcc
Confidence 5567777777777777766544322222 23566666665 34444442 4555555555544321
Q ss_pred ---------------CccceeeecccccCCCCCCcccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCchhhhhh
Q 041248 740 ---------------VELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNAMEEII 803 (813)
Q Consensus 740 ---------------~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~ 803 (813)
+.++ +. |.+..-|+.|+.|.|+. +.+-.|| .+-.+|-|+.|++...++|.--.
T Consensus 311 GIGKL~~Levf~aanN~LE-lV---------PEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-LV---------PEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhhhhhhHHHHhhccccc-cC---------chhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 2222 11 33334678888888875 4566677 46678999999999999875443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=4.1e-17 Score=163.48 Aligned_cols=265 Identities=23% Similarity=0.278 Sum_probs=187.8
Q ss_pred CCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCC
Q 041248 512 PDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLG 591 (813)
Q Consensus 512 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~ 591 (813)
|+..+.+++..|.++.|.+..+|.|++|+.|..|++. .+.++.+|....+.+++|.+|||..| .++++|+.++.|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g-~N~i~~lpae~~~~L~~l~vLDLRdN---klke~Pde~clLr 275 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG-ENQIEMLPAEHLKHLNSLLVLDLRDN---KLKEVPDEICLLR 275 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc-ccHHHhhHHHHhcccccceeeecccc---ccccCchHHHHhh
Confidence 4556778899999999999999999999999999998 78899999998889999999999999 9999999999999
Q ss_pred CCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhh-------------------------------------
Q 041248 592 SLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLL------------------------------------- 634 (813)
Q Consensus 592 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~------------------------------------- 634 (813)
+|.+||+++|.|+.+|.+++++ +|+.|-+.||+. ..+...+
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 9999999999999999999999 999999998853 3332221
Q ss_pred ----hcCCCCCceeeccccccCCCCCCCc---------------------ccc-------------ccCCccchhHHhhc
Q 041248 635 ----ISNSSWLRVLRMFAIGFENSEEPSE---------------------DSV-------------LIGGGEVLVHELLG 676 (813)
Q Consensus 635 ----i~~L~~L~~L~l~~~~~~~~~~~~~---------------------~~~-------------~~~~~~~~~~~l~~ 676 (813)
+..+.+.+.|.++.-..+.+|...+ +-. -.+.-.+...++..
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~ 433 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQ 433 (565)
T ss_pred cccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHh
Confidence 1222333444444333333332000 000 01224456778899
Q ss_pred CCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCC
Q 041248 677 LRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKR 756 (813)
Q Consensus 677 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 756 (813)
+++|..|+++.|-...++.-.... ..|+.|+++.+ ....++ ..+--+..|+.+..+ .+.+..+.++..
T Consensus 434 l~kLt~L~L~NN~Ln~LP~e~~~l---v~Lq~LnlS~N-rFr~lP-~~~y~lq~lEtllas-~nqi~~vd~~~l------ 501 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLNDLPEEMGSL---VRLQTLNLSFN-RFRMLP-ECLYELQTLETLLAS-NNQIGSVDPSGL------ 501 (565)
T ss_pred hhcceeeecccchhhhcchhhhhh---hhhheeccccc-ccccch-HHHhhHHHHHHHHhc-cccccccChHHh------
Confidence 999999999988777666544333 36888888874 333333 112122334443333 245554444433
Q ss_pred CCcccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCch
Q 041248 757 SEPFVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNA 798 (813)
Q Consensus 757 ~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~ 798 (813)
.++.+|..|++.++. +..+| .++++.+|++|++.+.+-
T Consensus 502 ---~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 502 ---KNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ---hhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCcc
Confidence 478888899988854 66666 678899999999988663
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.59 E-value=7.9e-16 Score=161.19 Aligned_cols=258 Identities=19% Similarity=0.200 Sum_probs=123.7
Q ss_pred eeEEecccccccccccCCCCC-ceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEe
Q 041248 520 VRRLSLMQNQIEILSEVPTCP-HLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLD 597 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~ 597 (813)
++.+++..|.++.+|.+.... +|+.|++. ++.+..+....++.++.||.||||.| .|+++| +++..-.++++|+
T Consensus 104 Lq~v~l~~N~Lt~IP~f~~~sghl~~L~L~-~N~I~sv~se~L~~l~alrslDLSrN---~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 104 LQEVNLNKNELTRIPRFGHESGHLEKLDLR-HNLISSVTSEELSALPALRSLDLSRN---LISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred ceeeeeccchhhhcccccccccceeEEeee-ccccccccHHHHHhHhhhhhhhhhhc---hhhcccCCCCCCCCCceEEe
Confidence 334444444444444332222 24444444 33344444333444444444454444 444443 1233334444555
Q ss_pred ecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCC---CCccc----cccCCccc
Q 041248 598 ISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEE---PSEDS----VLIGGGEV 669 (813)
Q Consensus 598 l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~---~~~~~----~~~~~~~~ 669 (813)
|++|.|+.+-.. |..|.+|.+|.|+.| .+..+|..+|.+|++|+.|++..|.+.-... .+++. .+.+.+..
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 555444444221 344444444555444 3444444444445555555444443322110 01110 00000000
Q ss_pred --hhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeee
Q 041248 670 --LVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKV 747 (813)
Q Consensus 670 --~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~ 747 (813)
.-+.|..|.+++.|++..|.......- ....++.|+.|+++.+ .+..+...++...+.|+.|+|+. +.++.+..
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g--~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~-N~i~~l~~ 334 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEG--WLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS-NRITRLDE 334 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcc--cccccchhhhhccchh-hhheeecchhhhcccceeEeccc-cccccCCh
Confidence 012355666677777776665543321 1122446777777763 34444444566667777777775 55665544
Q ss_pred cccccCCCCCCcccccCcceEeeccCcCCCccc--chhcCCCCceEeeecC
Q 041248 748 DYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT--FLVCAPSLKSLSLYGC 796 (813)
Q Consensus 748 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 796 (813)
..+. .+..|+.|.|+.+ .+..+. .+..+.+|+.|++++.
T Consensus 335 ~sf~---------~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 335 GSFR---------VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hHHH---------HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCC
Confidence 4443 6777788888774 355555 3456788888888764
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.5e-13 Score=157.25 Aligned_cols=265 Identities=20% Similarity=0.140 Sum_probs=151.3
Q ss_pred HHHHHHHhhhhcccceEEEEcCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcC
Q 041248 484 DMALWIACEIEKEKRKFLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQC 563 (813)
Q Consensus 484 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 563 (813)
..|....+++..++...+......+..+|..- ...++.|++..|.++.+|.. .++|++|+++ ++.+..+|..
T Consensus 189 ~~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs-~N~LtsLP~l---- 260 (788)
T PRK15387 189 AAVVQKMRACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVS-GNQLTSLPVL---- 260 (788)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEec-CCccCcccCc----
Confidence 34455555555555666666666777777633 34788999999998888754 5789999998 5677777753
Q ss_pred CCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCce
Q 041248 564 MPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRV 643 (813)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 643 (813)
.++|+.|++++| .+..+|... ..|+.|++++|.++.+|.. +++|+.|++++| .+..+|.. . .+|+.
T Consensus 261 p~sL~~L~Ls~N---~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~ 326 (788)
T PRK15387 261 PPGLLELSIFSN---PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCK 326 (788)
T ss_pred ccccceeeccCC---chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccc
Confidence 467888888888 677776422 4566777777777777753 356777777777 45666542 2 23445
Q ss_pred eeccccccCCCCCCCcccccc--CCccchhHHhhc-CCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccc
Q 041248 644 LRMFAIGFENSEEPSEDSVLI--GGGEVLVHELLG-LRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSI 720 (813)
Q Consensus 644 L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l 720 (813)
|.+.+|++.+++. ++..+. ......+..+.. ..+|+.|+++.|.+..++.. ..+|+.|+++++ .++.+
T Consensus 327 L~Ls~N~L~~LP~--lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l------~~~L~~LdLs~N-~Lt~L 397 (788)
T PRK15387 327 LWAYNNQLTSLPT--LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL------PSGLKELIVSGN-RLTSL 397 (788)
T ss_pred cccccCccccccc--cccccceEecCCCccCCCCCCCcccceehhhccccccCccc------ccccceEEecCC-cccCC
Confidence 5555555444331 000000 000000000000 12344445554444433321 125666666653 33333
Q ss_pred cccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCch
Q 041248 721 HATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNA 798 (813)
Q Consensus 721 ~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~ 798 (813)
+. .+++|+.|+++++ .+..+ |. .+.+|+.|+++++. ++.+| .++.+++|+.|++++++-
T Consensus 398 P~----l~s~L~~LdLS~N-~LssI-----------P~--l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 398 PV----LPSELKELMVSGN-RLTSL-----------PM--LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CC----cccCCCEEEccCC-cCCCC-----------Cc--chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCC
Confidence 31 1245666666653 33322 11 23467778887754 67777 467788888888887753
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=5.1e-16 Score=137.83 Aligned_cols=163 Identities=20% Similarity=0.349 Sum_probs=117.7
Q ss_pred CcCCCccCccceeEEeccccccccc-ccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccc
Q 041248 509 GAVPDVEGWENVRRLSLMQNQIEIL-SEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGM 587 (813)
Q Consensus 509 ~~~~~~~~~~~~~~l~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i 587 (813)
..++.....+.+.+|.+++|.+..+ |.+..+.+|.+|+++ ++.++.+|.. ++.++.||.|++.-| .+..+|..+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-nnqie~lp~~-issl~klr~lnvgmn---rl~~lprgf 98 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-NNQIEELPTS-ISSLPKLRILNVGMN---RLNILPRGF 98 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-cchhhhcChh-hhhchhhhheecchh---hhhcCcccc
Confidence 3445555566777788888877765 346777788888887 7777777776 777888888888777 677778888
Q ss_pred cCCCCCCEEeecCCCCc--ccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccC
Q 041248 588 SKLGSLQLLDISHAGIR--ELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIG 665 (813)
Q Consensus 588 ~~L~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 665 (813)
|.++.|+.|||.+|++. .+|..|..++-|+.|++++| ..+.+|.. +++|++||.|.+..|...+.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~l----------- 165 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLSL----------- 165 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhhC-----------
Confidence 88888888888877665 57777777777777888777 35777776 78888888887776554443
Q ss_pred CccchhHHhhcCCCCcEEEEEEcchhhHH
Q 041248 666 GGEVLVHELLGLRYLEVLELTLRSYDALQ 694 (813)
Q Consensus 666 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 694 (813)
+.+++.|+.|+.|++.+|....++
T Consensus 166 -----pkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 166 -----PKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred -----cHHHHHHHHHHHHhcccceeeecC
Confidence 366777777777777777655443
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.47 E-value=2.3e-16 Score=158.20 Aligned_cols=238 Identities=26% Similarity=0.302 Sum_probs=123.0
Q ss_pred eeEEecccccccccc-cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEee
Q 041248 520 VRRLSLMQNQIEILS-EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDI 598 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l 598 (813)
+..+.++.|....+| ....+..+..|+.+ .+++..+|+. ...+..|+.|+.+.| ...++|++|+.+..|..|+.
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs-~n~ls~lp~~-i~s~~~l~~l~~s~n---~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVS-HNKLSELPEQ-IGSLISLVKLDCSSN---ELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcc-cchHhhccHH-Hhhhhhhhhhhcccc---ceeecCchHHHHhhhhhhhc
Confidence 334444444443332 22333444444444 3334444443 334444444444444 44444444444444444444
Q ss_pred cCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCC
Q 041248 599 SHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLR 678 (813)
Q Consensus 599 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 678 (813)
.+|++.++|.++.++.+|..|++.+| .+..+|+..+. ++.|++|+...|-.. ..+++++.+.
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~----------------tlP~~lg~l~ 206 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLE----------------TLPPELGGLE 206 (565)
T ss_pred cccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhh----------------cCChhhcchh
Confidence 44444445544444444444444444 33444444222 444444444433222 2335666666
Q ss_pred CCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCC
Q 041248 679 YLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSE 758 (813)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 758 (813)
.|..|++..|++..++.+.+ +..|..|++.. +.++.++.+...++++|..|++.. +.+++. |+.
T Consensus 207 ~L~~LyL~~Nki~~lPef~g----cs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~-Pde--------- 270 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLPEFPG----CSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEV-PDE--------- 270 (565)
T ss_pred hhHHHHhhhcccccCCCCCc----cHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccC-chH---------
Confidence 66666666666555553332 22455555544 345555555556777777777776 555543 222
Q ss_pred cccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCch
Q 041248 759 PFVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNA 798 (813)
Q Consensus 759 ~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~ 798 (813)
...+.+|.+|+++|+ .+..+| .+|++ .|+.|-+.+.|-
T Consensus 271 ~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCch
Confidence 235777888888874 366676 56777 777777777653
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.45 E-value=6.8e-12 Score=153.89 Aligned_cols=291 Identities=14% Similarity=0.189 Sum_probs=181.4
Q ss_pred CCcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC-ccCHHHHHHHHHHHc
Q 041248 157 EPTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK-DLRLEKIQEDIGKKI 235 (813)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l 235 (813)
.+.++-|+.-.+.+.+ ....+++.|.|++|.||||++.++.+.. . .++|+++.. +.++..+...++..+
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHH
Confidence 4567888765555432 1357899999999999999999988643 2 589999864 456677777777777
Q ss_pred CCCCCc-----------cCCCCHHHHHHHHHHHhc--CCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCcc
Q 041248 236 GLVDDS-----------WKSKSVEEKALDIFRSLR--EKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFV 300 (813)
Q Consensus 236 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~ 300 (813)
+..... ....+.......+...+. +.+++|||||+... .........+......+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 421111 011222333444444443 68999999999543 222222222213345567888999974
Q ss_pred cccc--cC-CCCcceEcC----CCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCC-H
Q 041248 301 DVCG--SM-EADKKFQVA----CLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKT-A 372 (813)
Q Consensus 301 ~v~~--~~-~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~-~ 372 (813)
.-.. .. ......++. +|+.+|+.++|....+..- + .+.+.+|++.|+|.|+++..++..+..... .
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~ 236 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQNNSSL 236 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch
Confidence 3211 11 112244555 9999999999988765432 1 255789999999999999988877654321 1
Q ss_pred HHHHHHHHHHhchhhhccCc-hHHHHhHHHH-hhcCCChhhHHHHHhhhccCCCCccccHHHHHHHHHHcCCcccccccc
Q 041248 373 EEWIHAIEVLRTSASEFAGL-GEKVYRLLKF-SYDSLQNETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEESDRFS 450 (813)
Q Consensus 373 ~~w~~~~~~l~~~~~~~~~~-~~~i~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 450 (813)
... ... ..+. ...+...+.- .|+.||+ ..+..++..|+++ .++.+ +... +..
T Consensus 237 ~~~---~~~-------~~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~~-----l~~------ 290 (903)
T PRK04841 237 HDS---ARR-------LAGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIVR-----VTG------ 290 (903)
T ss_pred hhh---hHh-------hcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHHH-----HcC------
Confidence 110 011 1110 1234554433 3789999 8999999999987 23322 2211 111
Q ss_pred hHhhHHHHHHHHHHhcccce-e--cCCcEEEeHHHHHHHHHHH
Q 041248 451 AENQGYYIVGTLVHACLLEE-V--EDDKVKMHDVVRDMALWIA 490 (813)
Q Consensus 451 ~~~~~~~~l~~L~~~~ll~~-~--~~~~~~mHdlv~~~a~~~~ 490 (813)
.+.+...+++|.+.+++.. . +...|+.|++++++.+...
T Consensus 291 -~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 -EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2234667999999999653 2 3357999999999998765
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=7e-15 Score=130.69 Aligned_cols=167 Identities=22% Similarity=0.283 Sum_probs=137.3
Q ss_pred ccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchh
Q 041248 530 IEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEE 609 (813)
Q Consensus 530 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~ 609 (813)
+..++.+-.+++++.|.++ ++++..+|+. +..+.+|++|++++| .++++|.+|+.++.|+.|++.-|.+..+|.+
T Consensus 23 f~~~~gLf~~s~ITrLtLS-HNKl~~vppn-ia~l~nlevln~~nn---qie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLS-HNKLTVVPPN-IAELKNLEVLNLSNN---QIEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred Hhhcccccchhhhhhhhcc-cCceeecCCc-HHHhhhhhhhhcccc---hhhhcChhhhhchhhhheecchhhhhcCccc
Confidence 3445666778888899999 7788899988 888999999999999 9999999999999999999999999999999
Q ss_pred hcCCCCCcEEeccCcccc-cccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEc
Q 041248 610 LKLLVNLKCLNLRWTRML-NKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLR 688 (813)
Q Consensus 610 ~~~l~~L~~L~l~~~~~l-~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 688 (813)
|+.++-|+.||++.|+.- ..+|.+ +-.|+.|+-|+++.|.+.-+| .+.+.|++|+.|.+..|
T Consensus 98 fgs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe~lp----------------~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEILP----------------PDVGKLTNLQILSLRDN 160 (264)
T ss_pred cCCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcccCC----------------hhhhhhcceeEEeeccC
Confidence 999999999999988432 457877 888999999999977665443 67889999999999988
Q ss_pred chhhHHhhhcchhhhhcceeeeecccCCcccccc
Q 041248 689 SYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHA 722 (813)
Q Consensus 689 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~ 722 (813)
+.-.++.-. ..++.|+.|.+++ +.++.++.
T Consensus 161 dll~lpkei---g~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 161 DLLSLPKEI---GDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred chhhCcHHH---HHHHHHHHHhccc-ceeeecCh
Confidence 776555433 3455888899888 45665553
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=7.7e-13 Score=152.42 Aligned_cols=239 Identities=20% Similarity=0.214 Sum_probs=165.5
Q ss_pred EEEcCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKV 580 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 580 (813)
+......+..+|.. -.+.++.|++++|.+..+|.. .+++|++|+++ ++.+..+|..+. .+|+.|+|++| .+
T Consensus 183 L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls-~N~LtsLP~~l~---~~L~~L~Ls~N---~L 253 (754)
T PRK15370 183 LRLKILGLTTIPAC-IPEQITTLILDNNELKSLPEN-LQGNIKTLYAN-SNQLTSIPATLP---DTIQEMELSIN---RI 253 (754)
T ss_pred EEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChh-hccCCCEEECC-CCccccCChhhh---ccccEEECcCC---cc
Confidence 33444455556642 235788999999988887653 24689999998 556778887633 47899999999 88
Q ss_pred cccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCcc
Q 041248 581 LKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSED 660 (813)
Q Consensus 581 ~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 660 (813)
..+|..+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.. +. ++|++|++++|.+..++.
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP~---- 321 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTALPE---- 321 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccccCCc----
Confidence 88887665 579999999999998888664 58999999998 57788865 32 478888888887765531
Q ss_pred ccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccC
Q 041248 661 SVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAV 740 (813)
Q Consensus 661 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 740 (813)
.+ .++|+.|.++.|.+..++.. ..++|+.|++++| .+..++. .+ +++|+.|+|++|
T Consensus 322 ------------~l--~~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N-~L~~LP~-~l--p~~L~~LdLs~N- 377 (754)
T PRK15370 322 ------------TL--PPGLKTLEAGENALTSLPAS-----LPPELQVLDVSKN-QITVLPE-TL--PPTITTLDVSRN- 377 (754)
T ss_pred ------------cc--cccceeccccCCccccCChh-----hcCcccEEECCCC-CCCcCCh-hh--cCCcCEEECCCC-
Confidence 01 14678888887776654421 2357889999886 4444542 23 368899999875
Q ss_pred ccceeeecccccCCCCCCcccccCcceEeeccCcCCCcccc-----hhcCCCCceEeeecCc
Q 041248 741 ELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTF-----LVCAPSLKSLSLYGCN 797 (813)
Q Consensus 741 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-----l~~l~~L~~L~l~~c~ 797 (813)
.+..+. .. ...+|+.|++++|. +..+|. ...+|++..|++.+.+
T Consensus 378 ~Lt~LP-~~-----------l~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 378 ALTNLP-EN-----------LPAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCCCCC-Hh-----------HHHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 444331 11 22468888888864 666662 2345888888888866
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=5.4e-10 Score=122.95 Aligned_cols=295 Identities=15% Similarity=0.080 Sum_probs=169.6
Q ss_pred CCcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHH
Q 041248 157 EPTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIG 232 (813)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (813)
++.++||++++++|...+.+ .....+.|+|++|+|||++++.++++. ......-..+++++....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 35789999999999998843 344678899999999999999999987 2222223466777766677888999999
Q ss_pred HHcCCCCCccCCCCHHHHHHHHHHHhc--CCcEEEEEecccCcc------cccccccCCCCCCCCC--cEEEEEcCcccc
Q 041248 233 KKIGLVDDSWKSKSVEEKALDIFRSLR--EKRFVLLLDDIWERV------DLTKMGIPLSGPKNTT--SKVVFTTRFVDV 302 (813)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~--s~ilvTtR~~~v 302 (813)
.++..........+.++....+.+.+. +++.+||||+++... .+..+...+ ....+ ..+|.++....+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~--~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH--EEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh--hccCCCeEEEEEEECCcch
Confidence 988652211133456677777777765 456899999997532 122222211 11122 235555554433
Q ss_pred cccC-------CCCcceEcCCCCHHHHHHHHHHhhCC---CccCCChhHHHHHHHHHHHhCCcchHHHHHHHhh--c--C
Q 041248 303 CGSM-------EADKKFQVACLSEEDAWELFRKKVGE---ETLESDHDIVELAQTVAKECGGLPLALITIGRAM--A--F 368 (813)
Q Consensus 303 ~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l--~--~ 368 (813)
.... -....+.+++++.++..+++..++.. .....+..++.+++......|..+.|+..+-.+. + .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 2211 12346899999999999999987632 1111222223333333333455777776654321 1 1
Q ss_pred C---CCHHHHHHHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhcc-CC-CCccccHHHHHHH--HHHcC
Q 041248 369 K---KTAEEWIHAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCL-YP-EDYDILKWDLIDC--WIGEG 441 (813)
Q Consensus 369 ~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~-fp-~~~~i~~~~li~~--w~a~g 441 (813)
+ -+.+....+.+... .....-.+..||. +.|..+..++. .. ....+....+... .+++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 14455555444331 1223445788998 55554443332 21 1123444444422 22221
Q ss_pred CcccccccchHhhHHHHHHHHHHhccccee
Q 041248 442 FLEESDRFSAENQGYYIVGTLVHACLLEEV 471 (813)
Q Consensus 442 ~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 471 (813)
+-.. .........|+..|...+++...
T Consensus 332 ~~~~---~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYE---PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCC---cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1100 11224456689999999998753
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=3.9e-12 Score=148.97 Aligned_cols=237 Identities=20% Similarity=0.210 Sum_probs=152.6
Q ss_pred EEEEcCCccCcCCCccCccceeEEeccccc--cccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccC
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQ--IEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNC 575 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 575 (813)
.++........++.....+.++.|-+..|. +..++. +..++.|++|++++|..+..+|.. ++.+-+||||+++++
T Consensus 527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT 605 (889)
T ss_pred EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC
Confidence 344444444445555555678999998886 566655 788999999999998888999987 899999999999999
Q ss_pred CcccccccCccccCCCCCCEEeecCCC-CcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCC
Q 041248 576 GHVKVLKLPFGMSKLGSLQLLDISHAG-IRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 576 ~~~~~~~lp~~i~~L~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
.+..+|..+++|..|.|||+..+. ...+|.....|.+|++|.+.... .......++.+.+|++|....+...+.
T Consensus 606 ---~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 606 ---GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred ---CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh
Confidence 999999999999999999999984 45556666679999999998764 112222245555555555444333222
Q ss_pred ---CC-----------CCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHh-hhcch--hh-hhcceeeeecccCC
Q 041248 655 ---EE-----------PSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQF-FLSSN--KL-KSCIRSLFLNKLGG 716 (813)
Q Consensus 655 ---~~-----------~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~-~~~~~--~~-~~~L~~L~l~~~~~ 716 (813)
.. ..+.... .........+..+.+|+.|.+..+....... ..... .. .+++.++.+.+|..
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 00 0000000 1122344556777888888887665532211 00000 00 22455555555555
Q ss_pred cccccccccccccccceeeecccCcccee
Q 041248 717 TKSIHATAFSDLKHLNELCIRSAVELEEL 745 (813)
Q Consensus 717 ~~~l~~~~l~~l~~L~~L~l~~~~~l~~l 745 (813)
...+.. ....++|+.|.+.+|..++.+
T Consensus 760 ~r~l~~--~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 760 LRDLTW--LLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ccccch--hhccCcccEEEEecccccccC
Confidence 554442 223578888888887766643
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=5e-13 Score=148.10 Aligned_cols=258 Identities=19% Similarity=0.224 Sum_probs=170.5
Q ss_pred cceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEe
Q 041248 518 ENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLD 597 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~ 597 (813)
+++++|....|.+..+..-+...+|+.++++ .+.+..+| +.++.+.+|..|+..+| .+..+|..|....+|++|+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis-~n~l~~lp-~wi~~~~nle~l~~n~N---~l~~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDIS-HNNLSNLP-EWIGACANLEALNANHN---RLVALPLRISRITSLVSLS 293 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecc-hhhhhcch-HHHHhcccceEecccch---hHHhhHHHHhhhhhHHHHH
Confidence 3567777777777654444556678888888 66677888 55888888888888888 7888888888888888888
Q ss_pred ecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCC-CceeeccccccCCCCCCCccc-------c--ccCCc
Q 041248 598 ISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSW-LRVLRMFAIGFENSEEPSEDS-------V--LIGGG 667 (813)
Q Consensus 598 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~~~~-------~--~~~~~ 667 (813)
+.+|.++.+|.....+++|++|+|..| ++..+|+..+..+.. |+.|+.+.+.....+..+-.. . -....
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 888888888888888888888888888 678888865555544 777777766665544211000 0 01123
Q ss_pred cchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeee
Q 041248 668 EVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKV 747 (813)
Q Consensus 668 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~ 747 (813)
...+.-|.+..+|+.|+++.|....++... ...+..|+.|+|+| +.++.++. .+..++.|++|...+ +.+.. .
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~--~~kle~LeeL~LSG-NkL~~Lp~-tva~~~~L~tL~ahs-N~l~~-f- 445 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASK--LRKLEELEELNLSG-NKLTTLPD-TVANLGRLHTLRAHS-NQLLS-F- 445 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHH--HhchHHhHHHhccc-chhhhhhH-HHHhhhhhHHHhhcC-Cceee-c-
Confidence 344556777888888888888776655432 22345778888888 45666652 455666666665543 22221 1
Q ss_pred cccccCCCCCCcccccCcceEeeccCcCCCcccchhc--CCCCceEeeecCch
Q 041248 748 DYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVC--APSLKSLSLYGCNA 798 (813)
Q Consensus 748 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~--l~~L~~L~l~~c~~ 798 (813)
|....+++|+.++++. +.+..+..... -|+|++|++++...
T Consensus 446 ---------Pe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 446 ---------PELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ---------hhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 2334677777777764 33444321111 16777777777664
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=8.5e-12 Score=143.89 Aligned_cols=225 Identities=20% Similarity=0.258 Sum_probs=163.5
Q ss_pred ceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEee
Q 041248 519 NVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDI 598 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l 598 (813)
....|.+..+.+..+|.. -.++|+.|+++ ++.+..+|..++ .+|++|++++| .++.+|..+. .+|+.|+|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls-~N~LtsLP~~l~---~nL~~L~Ls~N---~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILD-NNELKSLPENLQ---GNIKTLYANSN---QLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEec-CCCCCcCChhhc---cCCCEEECCCC---ccccCChhhh--ccccEEEC
Confidence 345788888888877652 23589999999 667888988744 58999999999 8889987664 47999999
Q ss_pred cCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCC
Q 041248 599 SHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLR 678 (813)
Q Consensus 599 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 678 (813)
++|.+..+|..+. .+|+.|++++| .+..+|.. +. ++|++|++++|++..++. .+. +
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP~----------------~lp--~ 304 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTLPA----------------HLP--S 304 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccCcc----------------cch--h
Confidence 9999999998875 58999999988 67889986 43 589999999988776541 111 3
Q ss_pred CCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCC
Q 041248 679 YLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSE 758 (813)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 758 (813)
+|+.|+++.|....++.. ..++|+.|.+++| .++.++. .+ +++|+.|+++++ .+..+ +.
T Consensus 305 sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N-~Lt~LP~-~l--~~sL~~L~Ls~N-~L~~L-P~---------- 363 (754)
T PRK15370 305 GITHLNVQSNSLTALPET-----LPPGLKTLEAGEN-ALTSLPA-SL--PPELQVLDVSKN-QITVL-PE---------- 363 (754)
T ss_pred hHHHHHhcCCccccCCcc-----ccccceeccccCC-ccccCCh-hh--cCcccEEECCCC-CCCcC-Ch----------
Confidence 567777887776644321 2347999999886 4555552 23 368999999985 34432 11
Q ss_pred cccccCcceEeeccCcCCCcccchhcCCCCceEeeecCchhhhh
Q 041248 759 PFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCNAMEEI 802 (813)
Q Consensus 759 ~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i 802 (813)
...++|+.|+|++|. +..+|.- ..++|+.|++++|. ++.+
T Consensus 364 -~lp~~L~~LdLs~N~-Lt~LP~~-l~~sL~~LdLs~N~-L~~L 403 (754)
T PRK15370 364 -TLPPTITTLDVSRNA-LTNLPEN-LPAALQIMQASRNN-LVRL 403 (754)
T ss_pred -hhcCCcCEEECCCCc-CCCCCHh-HHHHHHHHhhccCC-cccC
Confidence 124689999999985 7777732 12478889998854 4443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=1.4e-12 Score=131.26 Aligned_cols=257 Identities=19% Similarity=0.192 Sum_probs=186.2
Q ss_pred eEEEEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEecc-C
Q 041248 499 KFLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSN-C 575 (813)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~ 575 (813)
..+.+.+.++..+|.. -++....+.+..|.|+.+|. |..+++||.|+++ ++.++.|.+.+|.+++.|..|-+.+ |
T Consensus 49 ~~VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 4555666777777652 23467788899999999875 7889999999999 7789899888899999887776666 6
Q ss_pred CcccccccCc-cccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 576 GHVKVLKLPF-GMSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 576 ~~~~~~~lp~-~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
.|+.+|+ .+++|..|+-|.+.-|.+.-+++. +..|++|..|.+.+| .++.++.+.+..+.+++++++..|.+..
T Consensus 127 ---kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 127 ---KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred ---chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc
Confidence 8999984 588899999999988888876654 788999999999998 5788888778889999999888766321
Q ss_pred CCC---------------CCcc----------------------------ccccC----CccchhHHhhcCCCCcEEEEE
Q 041248 654 SEE---------------PSED----------------------------SVLIG----GGEVLVHELLGLRYLEVLELT 686 (813)
Q Consensus 654 ~~~---------------~~~~----------------------------~~~~~----~~~~~~~~l~~L~~L~~L~l~ 686 (813)
... ++.. ..... .......-+..|++|++|+++
T Consensus 203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 110 0000 00000 011233447889999999999
Q ss_pred EcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcc
Q 041248 687 LRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLH 766 (813)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 766 (813)
.|.+..++.-. ......++.|.|..+ .+..+.-..|..++.|+.|+|++ +.++.+.+..+. .+..|.
T Consensus 283 nN~i~~i~~~a--Fe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~---------~~~~l~ 349 (498)
T KOG4237|consen 283 NNKITRIEDGA--FEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQ---------TLFSLS 349 (498)
T ss_pred CCccchhhhhh--hcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEeccccc---------ccceee
Confidence 98887655422 222347888888773 55555545688899999999998 677766555554 677888
Q ss_pred eEeeccCc
Q 041248 767 RVTMERCH 774 (813)
Q Consensus 767 ~L~l~~c~ 774 (813)
+|++-.++
T Consensus 350 ~l~l~~Np 357 (498)
T KOG4237|consen 350 TLNLLSNP 357 (498)
T ss_pred eeehccCc
Confidence 88886544
No 23
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.25 E-value=4.4e-10 Score=124.93 Aligned_cols=293 Identities=17% Similarity=0.171 Sum_probs=191.6
Q ss_pred CcccchhHHHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC-ccCHHHHHHHHHHHc
Q 041248 158 PTIVGLQSQLEQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK-DLRLEKIQEDIGKKI 235 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l 235 (813)
...+-|..-+ +.|.. .+.+.+.|..++|.|||||+.++.... ..-..+.|.+.+. +.++..+...++..+
T Consensus 19 ~~~v~R~rL~----~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRPRLL----DRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccHHHH----HHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 4557776544 44443 378999999999999999999998733 3445689999866 457888999999888
Q ss_pred CCCCCcc-----------CCCCHHHHHHHHHHHhc--CCcEEEEEecccC--cccc-cccccCCCCCCCCCcEEEEEcCc
Q 041248 236 GLVDDSW-----------KSKSVEEKALDIFRSLR--EKRFVLLLDDIWE--RVDL-TKMGIPLSGPKNTTSKVVFTTRF 299 (813)
Q Consensus 236 ~~~~~~~-----------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~--~~~~-~~~~~~l~~~~~~~s~ilvTtR~ 299 (813)
+...+.. ...+.......+..-+. .++..+||||..- .... ..+...+ .....+-..|||||+
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl-~~~P~~l~lvv~SR~ 169 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLL-KHAPENLTLVVTSRS 169 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHH-HhCCCCeEEEEEecc
Confidence 7433221 12333444455555444 4689999999752 1222 2222222 555678899999997
Q ss_pred ccccc---cCCCCcceEcC----CCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCH
Q 041248 300 VDVCG---SMEADKKFQVA----CLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKTA 372 (813)
Q Consensus 300 ~~v~~---~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~ 372 (813)
..-.. ..-....+++. .|+.+|+.++|....+..- .+...+.+.+..+|-+-|+..++=.++.+.+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 65422 11122333433 4899999999998864322 13567899999999999999998877744444
Q ss_pred HHHHHHHHHHhchhhhccCchHHHHhH-HHHhhcCCChhhHHHHHhhhccCCCCccccHHHHHHHHHHcCCcccccccch
Q 041248 373 EEWIHAIEVLRTSASEFAGLGEKVYRL-LKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEESDRFSA 451 (813)
Q Consensus 373 ~~w~~~~~~l~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 451 (813)
+.-...+. +..+.+..- ..--++.||+ .+|..++-||+++.= -+.|+..- ..
T Consensus 244 ~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~L------------tg 296 (894)
T COG2909 244 EQSLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNAL------------TG 296 (894)
T ss_pred HHHhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHH------------hc
Confidence 33322221 111122221 2234679999 899999999998642 12233222 23
Q ss_pred HhhHHHHHHHHHHhccccee---cCCcEEEeHHHHHHHHHHHhh
Q 041248 452 ENQGYYIVGTLVHACLLEEV---EDDKVKMHDVVRDMALWIACE 492 (813)
Q Consensus 452 ~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~~~~~ 492 (813)
++.+...+++|.+++|+-.. ....|+.|.++.||-+.....
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 45666779999999998643 678999999999998866543
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.23 E-value=3.4e-11 Score=138.05 Aligned_cols=233 Identities=21% Similarity=0.205 Sum_probs=154.5
Q ss_pred eeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeec
Q 041248 520 VRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDIS 599 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~ 599 (813)
-..|+++.+.+..+|.. -.++|+.|++. ++.+..+|.. +++|++|++++| .++.+|.. ..+|+.|+++
T Consensus 203 ~~~LdLs~~~LtsLP~~-l~~~L~~L~L~-~N~Lt~LP~l----p~~Lk~LdLs~N---~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTTLPDC-LPAHITTLVIP-DNNLTSLPAL----PPELRTLEVSGN---QLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCcCCcc-hhcCCCEEEcc-CCcCCCCCCC----CCCCcEEEecCC---ccCcccCc---ccccceeecc
Confidence 45688888888887652 23589999999 5678888863 689999999999 88888853 4689999999
Q ss_pred CCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccC--CccchhHHhhcC
Q 041248 600 HAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIG--GGEVLVHELLGL 677 (813)
Q Consensus 600 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L 677 (813)
+|.++.+|.. +.+|+.|++++| .+..+|.. +++|++|++++|++..++. ++..+.. .....+..+..+
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~LP~l 340 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLPTL 340 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCC-cccccccc----ccccceeECCCCccccCCC--CcccccccccccCcccccccc
Confidence 9999999863 367889999999 57888863 4789999999998887653 1111100 011112222222
Q ss_pred -CCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCC
Q 041248 678 -RYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKR 756 (813)
Q Consensus 678 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 756 (813)
.+|+.|+++.|.+..++.. ..+|+.|+++++ .+..++. + +++|+.|++++ +.+..+
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N-~L~~LP~--l--~~~L~~LdLs~-N~Lt~L----------- 397 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPTL------PSELYKLWAYNN-RLTSLPA--L--PSGLKELIVSG-NRLTSL----------- 397 (788)
T ss_pred ccccceEecCCCccCCCCCC------Ccccceehhhcc-ccccCcc--c--ccccceEEecC-CcccCC-----------
Confidence 3577777777766554432 235666666653 3333331 1 24677777775 334321
Q ss_pred CCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecCchhhhhh
Q 041248 757 SEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCNAMEEII 803 (813)
Q Consensus 757 ~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~ 803 (813)
|. .+++|+.|++++|. +..+|.+ +.+|+.|+++++ .++++.
T Consensus 398 P~--l~s~L~~LdLS~N~-LssIP~l--~~~L~~L~Ls~N-qLt~LP 438 (788)
T PRK15387 398 PV--LPSELKELMVSGNR-LTSLPML--PSGLLSLSVYRN-QLTRLP 438 (788)
T ss_pred CC--cccCCCEEEccCCc-CCCCCcc--hhhhhhhhhccC-cccccC
Confidence 11 24678999999975 7777743 457788888773 355553
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=2.2e-09 Score=111.58 Aligned_cols=182 Identities=13% Similarity=0.163 Sum_probs=114.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
.+..++.|+|++|+||||+++.+++.. .. ... ..+|+ +....+..+++..|+..++.... ..+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 445689999999999999999999986 21 111 22333 33445677889999999887542 2233333334333
Q ss_pred H-----hcCCcEEEEEecccCcc--cccccccCC--CCCCCCCcEEEEEcCcccccccC----------CCCcceEcCCC
Q 041248 257 S-----LREKRFVLLLDDIWERV--DLTKMGIPL--SGPKNTTSKVVFTTRFVDVCGSM----------EADKKFQVACL 317 (813)
Q Consensus 257 ~-----l~~k~~LlVlDdv~~~~--~~~~~~~~l--~~~~~~~s~ilvTtR~~~v~~~~----------~~~~~~~l~~L 317 (813)
. ..+++.++|+||++... .++.+.... .........|++|.... ....+ .....++++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 26788999999998642 333332111 01222233455655432 11111 11346789999
Q ss_pred CHHHHHHHHHHhhCCCccCCC-hhHHHHHHHHHHHhCCcchHHHHHHHhh
Q 041248 318 SEEDAWELFRKKVGEETLESD-HDIVELAQTVAKECGGLPLALITIGRAM 366 (813)
Q Consensus 318 ~~~~~~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~GlPLai~~~~~~l 366 (813)
+.+|..+++...+........ .-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999887643221111 1224788999999999999999888765
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.22 E-value=1.5e-12 Score=144.33 Aligned_cols=214 Identities=21% Similarity=0.258 Sum_probs=147.0
Q ss_pred CCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCce
Q 041248 564 MPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRV 643 (813)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 643 (813)
-.+|++++++++ .++.+|+.++.+.+|+.++..+|.+..+|..+...++|+.|.+..| .+..+|+. ..+++.|++
T Consensus 240 p~nl~~~dis~n---~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~-le~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHN---NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPF-LEGLKSLRT 314 (1081)
T ss_pred cccceeeecchh---hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc-ccccceeee
Confidence 357888999988 8888888888899999999999988889988888889999988888 57888886 777899999
Q ss_pred eeccccccCCCCCCCccccccCCccchhHHhh---------------cCCCCcEEEEEEcchhh--HHhhhcchhhhhcc
Q 041248 644 LRMFAIGFENSEEPSEDSVLIGGGEVLVHELL---------------GLRYLEVLELTLRSYDA--LQFFLSSNKLKSCI 706 (813)
Q Consensus 644 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------~L~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L 706 (813)
|++..|.+.+++.-.+. .....+..|. .+..|+.|.+..|.... ++.+ ....+|
T Consensus 315 LdL~~N~L~~lp~~~l~-----v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l----~~~~hL 385 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLA-----VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL----VNFKHL 385 (1081)
T ss_pred eeehhccccccchHHHh-----hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh----ccccce
Confidence 99988888776630000 0000000010 01112222222222211 1111 113478
Q ss_pred eeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCcccchhcCC
Q 041248 707 RSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVCAP 786 (813)
Q Consensus 707 ~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~ 786 (813)
+.|+|+. +.+.+++...+.+++.|+.|+++| +.++.+. +.. ..++.|+.|...++ .+..+|.+..+|
T Consensus 386 KVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp-~tv---------a~~~~L~tL~ahsN-~l~~fPe~~~l~ 452 (1081)
T KOG0618|consen 386 KVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLP-DTV---------ANLGRLHTLRAHSN-QLLSFPELAQLP 452 (1081)
T ss_pred eeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhh-HHH---------HhhhhhHHHhhcCC-ceeechhhhhcC
Confidence 8888877 466666666677888888888888 6676552 222 37888888888774 578888889999
Q ss_pred CCceEeeecCchhhhhhcc
Q 041248 787 SLKSLSLYGCNAMEEIISV 805 (813)
Q Consensus 787 ~L~~L~l~~c~~l~~i~~~ 805 (813)
.|+.+|+ +|.+|..+...
T Consensus 453 qL~~lDl-S~N~L~~~~l~ 470 (1081)
T KOG0618|consen 453 QLKVLDL-SCNNLSEVTLP 470 (1081)
T ss_pred cceEEec-ccchhhhhhhh
Confidence 9999999 46888877644
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=1.3e-08 Score=110.82 Aligned_cols=296 Identities=14% Similarity=0.129 Sum_probs=169.1
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC---CEEEEEEecCccCHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSF---DCVIWAVVSKDLRLEKIQED 230 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~ 230 (813)
+.++||++++++|..++.. .....+.|+|++|+|||++++.+++......... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999863 3456899999999999999999998752111111 24567777776777889999
Q ss_pred HHHHc---CCCCCccCCCCHHHHHHHHHHHhc--CCcEEEEEecccCcc-c----ccccccC--CCCCCCCCcEEEEEcC
Q 041248 231 IGKKI---GLVDDSWKSKSVEEKALDIFRSLR--EKRFVLLLDDIWERV-D----LTKMGIP--LSGPKNTTSKVVFTTR 298 (813)
Q Consensus 231 i~~~l---~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~~~~~--l~~~~~~~s~ilvTtR 298 (813)
|++++ +...+. ...+..+....+.+.+. ++++++|||+++... . +..+... .....+....+|.+|.
T Consensus 95 i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 99988 332211 22345556666666663 567899999997541 1 1122111 0001112334444454
Q ss_pred cccccccC-------CCCcceEcCCCCHHHHHHHHHHhhCC--CccCCChhHHHHHHHHHHHhCCcchHH-HHHHHhh--
Q 041248 299 FVDVCGSM-------EADKKFQVACLSEEDAWELFRKKVGE--ETLESDHDIVELAQTVAKECGGLPLAL-ITIGRAM-- 366 (813)
Q Consensus 299 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPLai-~~~~~~l-- 366 (813)
.......+ -....+.+++++.++..+++..++.. ....-+++..+.+..++..+.|.|..+ .++-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33321111 11246899999999999999988641 111122333345556677777888544 3221111
Q ss_pred c--C-C--CCHHHHHHHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhccC--CCCccccHHHHHHHH--
Q 041248 367 A--F-K--KTAEEWIHAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLY--PEDYDILKWDLIDCW-- 437 (813)
Q Consensus 367 ~--~-~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~w-- 437 (813)
. . . -+.+..+.+.+.+. .....-++..||. +.+..+..+... ..+..+....+...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 1 23444444433321 1223345678888 566544444321 133345555555533
Q ss_pred HHcCCcccccccchHhhHHHHHHHHHHhccccee
Q 041248 438 IGEGFLEESDRFSAENQGYYIVGTLVHACLLEEV 471 (813)
Q Consensus 438 ~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 471 (813)
+++. +.. ..........++..|...|++...
T Consensus 320 ~~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCED-IGV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1221 111 123346677789999999999864
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.19 E-value=3.5e-11 Score=122.34 Aligned_cols=196 Identities=18% Similarity=0.204 Sum_probs=101.7
Q ss_pred ccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHH--------
Q 041248 160 IVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDI-------- 231 (813)
Q Consensus 160 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i-------- 231 (813)
|+||++++++|.+++..+....+.|+|+.|+|||+|++.+.+.. . ...+ .++|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~~~-~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNESS-LRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHH-HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhhhH-HHHHHHHHHHHH
Confidence 79999999999999988778899999999999999999999976 1 1111 344444433332211 1111
Q ss_pred --HHHcCCCCCc--------cCCCCHHHHHHHHHHHhc--CCcEEEEEecccCcc-cc-------cccccCCC-CCCCCC
Q 041248 232 --GKKIGLVDDS--------WKSKSVEEKALDIFRSLR--EKRFVLLLDDIWERV-DL-------TKMGIPLS-GPKNTT 290 (813)
Q Consensus 232 --~~~l~~~~~~--------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~-------~~~~~~l~-~~~~~~ 290 (813)
.+.++...+. ............+.+.+. +++++||+||+.... .. ..+...+. ......
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 1112110000 011222333444444443 355999999996544 11 11111110 011233
Q ss_pred cEEEEEcCccccccc--------CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 291 SKVVFTTRFVDVCGS--------MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 291 s~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
..+|+++.+...... .+....+.+++|+.+++++++...+... ..- +.-++..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 344444443333221 2333459999999999999999976433 111 11245679999999999988864
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=1.9e-12 Score=130.30 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=103.7
Q ss_pred EecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeecC-
Q 041248 523 LSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDISH- 600 (813)
Q Consensus 523 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~~- 600 (813)
++..+..+.++|.- --+....++|. .+.+..+|++.|+.+++||.||||+| .|+.+ |+.+.+|..|-.|-+.+
T Consensus 51 VdCr~~GL~eVP~~-LP~~tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~N---~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLTEVPAN-LPPETVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSKN---NISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcccCccc-CCCcceEEEec-cCCcccCChhhccchhhhceeccccc---chhhcChHhhhhhHhhhHHHhhcC
Confidence 33444455555431 12355667887 77899999999999999999999999 89887 88899999988877776
Q ss_pred CCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCC
Q 041248 601 AGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 601 ~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
|+|+.+|+. |+.|..|+.|.+.-| .+.-++.+.+..|++|..|.+..|.+..++
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~ 180 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSIC 180 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhc
Confidence 799999987 899999999999877 578888888999999999999998877665
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.14 E-value=7.7e-10 Score=117.78 Aligned_cols=273 Identities=15% Similarity=0.113 Sum_probs=150.3
Q ss_pred CcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIG 232 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (813)
..|+|+++.++.+..++.. .....+.|+|++|+|||++|+.+++.. . ..+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEecc-cccChHHHHHHH
Confidence 5799999999998877752 345678999999999999999999987 2 221 112211 111122233333
Q ss_pred HHcCCCC----CccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCcccccccC--
Q 041248 233 KKIGLVD----DSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVCGSM-- 306 (813)
Q Consensus 233 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~~~-- 306 (813)
..++... ++.+..+ ......++..+.+.+..+|+|+..+...+.. .+ .+.+-|..||+...+....
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l----~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DL----PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cC----CCceEEeecCCcccCCHHHHH
Confidence 3332111 0000001 1122334455555666666666543322211 11 1235566677755443221
Q ss_pred CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCHHHHHHHHHHHhchh
Q 041248 307 EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKTAEEWIHAIEVLRTSA 386 (813)
Q Consensus 307 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 386 (813)
.....+++++++.++..+++.+.+.......+ .+.+..|++.|+|.|-.+..+...+ ..|.... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~---~~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRV------RDFAQVK---GDGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHc---CCCC
Confidence 12346899999999999999998875543333 3578899999999996555444322 1221110 0000
Q ss_pred hhccCchHHHHhHHHHhhcCCChhhHHHHHh-hhccCCCCccccHHHHHHHHHHcCCcccccccchHhhHHHHHH-HHHH
Q 041248 387 SEFAGLGEKVYRLLKFSYDSLQNETIRSCFL-YCCLYPEDYDILKWDLIDCWIGEGFLEESDRFSAENQGYYIVG-TLVH 464 (813)
Q Consensus 387 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~-~L~~ 464 (813)
... ..-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... | ...+.++..++ .|++
T Consensus 238 I~~-~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 238 ITK-EIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQ 303 (328)
T ss_pred CCH-HHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHH
Confidence 000 0001334455667778887 5566664 66667655 45554443322 1 22234444455 7999
Q ss_pred hccccee
Q 041248 465 ACLLEEV 471 (813)
Q Consensus 465 ~~ll~~~ 471 (813)
.+|++..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 9999754
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.13 E-value=4.3e-09 Score=111.37 Aligned_cols=273 Identities=16% Similarity=0.110 Sum_probs=151.8
Q ss_pred CcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIG 232 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (813)
..|+|+++.++.|..++.. .....+.++|++|+|||+||+.+++.. ...+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchh-HHHHH
Confidence 3689999999999888862 345668899999999999999999986 2222 1122111111122 22223
Q ss_pred HHcCCCC----CccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCcccccccC--
Q 041248 233 KKIGLVD----DSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVCGSM-- 306 (813)
Q Consensus 233 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~~~-- 306 (813)
..++... ++....+ ......+...+.+.+..+|+++..+...+.. .+ .+.+-|..||+...+....
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~----~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL----PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cC----CCeEEEEecCCccccCHHHHh
Confidence 3332111 0001111 1223445666666677777777655444431 11 2245666777765443221
Q ss_pred CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCHHHHHHHHHHHhchh
Q 041248 307 EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKTAEEWIHAIEVLRTSA 386 (813)
Q Consensus 307 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 386 (813)
.....+++++++.++..+++.+.+......-+ .+....|++.|+|.|-.+..++..+ |.... ..+...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCC
Confidence 12346789999999999999988864432222 3567899999999997765544322 11100 000000
Q ss_pred hhccCchHHHHhHHHHhhcCCChhhHHHHHh-hhccCCCCccccHHHHHHHHHHcCCcccccccchHhhHHHHHH-HHHH
Q 041248 387 SEFAGLGEKVYRLLKFSYDSLQNETIRSCFL-YCCLYPEDYDILKWDLIDCWIGEGFLEESDRFSAENQGYYIVG-TLVH 464 (813)
Q Consensus 387 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~-~L~~ 464 (813)
..... -......+...|..++. ..+..+. ....++.+ .+..+.+.... | .....++..++ .|++
T Consensus 217 it~~~-v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 217 INRDI-ALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQ 282 (305)
T ss_pred cCHHH-HHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHH
Confidence 00000 01222335566788887 5666555 44556543 34433333222 1 22345556677 6999
Q ss_pred hccccee
Q 041248 465 ACLLEEV 471 (813)
Q Consensus 465 ~~ll~~~ 471 (813)
.+|+...
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999754
No 32
>PF05729 NACHT: NACHT domain
Probab=98.98 E-value=2.7e-09 Score=101.96 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CCEEEEEEecCccCHH---HHHHHHHHHcCCCCCccCCCCHHHHHH
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTS----FDCVIWAVVSKDLRLE---KIQEDIGKKIGLVDDSWKSKSVEEKAL 252 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 252 (813)
+++.|+|.+|+||||+++.++.+... ... +...+|++........ .+...|........ .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 57899999999999999999988732 222 4567777765544322 34444444432211 11111
Q ss_pred HHHH-HhcCCcEEEEEecccCccc---------ccccccCCCC-CCCCCcEEEEEcCcccc---cccCCCCcceEcCCCC
Q 041248 253 DIFR-SLREKRFVLLLDDIWERVD---------LTKMGIPLSG-PKNTTSKVVFTTRFVDV---CGSMEADKKFQVACLS 318 (813)
Q Consensus 253 ~l~~-~l~~k~~LlVlDdv~~~~~---------~~~~~~~l~~-~~~~~s~ilvTtR~~~v---~~~~~~~~~~~l~~L~ 318 (813)
.+.. .-..+++++|+|++++... +..+...+.. ...++.+++||+|.... .........+++.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 1212 2257899999999975422 1122211211 13568999999998766 3333445689999999
Q ss_pred HHHHHHHHHHhh
Q 041248 319 EEDAWELFRKKV 330 (813)
Q Consensus 319 ~~~~~~Lf~~~~ 330 (813)
+++..+++.+.+
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=7.8e-10 Score=103.98 Aligned_cols=114 Identities=28% Similarity=0.332 Sum_probs=28.6
Q ss_pred cccccCCCCCceeEEEeeeccccccccchhhc-CCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchh
Q 041248 531 EILSEVPTCPHLLTLFLDFNYKLEMITDGFFQ-CMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEE 609 (813)
Q Consensus 531 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~ 609 (813)
...+...++.+++.|++. ++.+..+.. ++ .+.+|+.|++++| .++.++ .+..|++|++|++++|.|+.++..
T Consensus 10 ~~~~~~~n~~~~~~L~L~-~n~I~~Ie~--L~~~l~~L~~L~Ls~N---~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLR-GNQISTIEN--LGATLDKLEVLDLSNN---QITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp ---------------------------S----TT-TT--EEE-TTS-----S--T-T----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccc-ccccccccc--hhhhhcCCCEEECCCC---CCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 333344444455666665 333443322 22 3556666666666 555554 455566666666666666666544
Q ss_pred h-cCCCCCcEEeccCcccccccch-hhhcCCCCCceeeccccccC
Q 041248 610 L-KLLVNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGFE 652 (813)
Q Consensus 610 ~-~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 652 (813)
+ ..+++|++|++++| .+..+.. ..++.+++|++|++.+|.++
T Consensus 83 l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 3 24566666666665 3333321 11455566666666665554
No 34
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.91 E-value=3.3e-08 Score=116.78 Aligned_cols=305 Identities=16% Similarity=0.190 Sum_probs=175.3
Q ss_pred ccchhHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccC---HHHHHHHHHH
Q 041248 160 IVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLR---LEKIQEDIGK 233 (813)
Q Consensus 160 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~---~~~~~~~i~~ 233 (813)
++||+.+++.|...+.+ +...++.+.|..|+|||+++++|.....+.+..|-.-.+-....+.. ..+.++++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999998864 46679999999999999999999998733222221111111222222 2233333333
Q ss_pred Hc-------------------CCCCCc--------------------cCCCCHHHHH-----HHHHHHh-cCCcEEEEEe
Q 041248 234 KI-------------------GLVDDS--------------------WKSKSVEEKA-----LDIFRSL-REKRFVLLLD 268 (813)
Q Consensus 234 ~l-------------------~~~~~~--------------------~~~~~~~~~~-----~~l~~~l-~~k~~LlVlD 268 (813)
++ +..... ..+.....+. ..+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 111100 0011111111 1122222 3569999999
Q ss_pred cc-cCc-ccccccccCCCCCCC----CCcEEEE--EcCcc--cccccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCC
Q 041248 269 DI-WER-VDLTKMGIPLSGPKN----TTSKVVF--TTRFV--DVCGSMEADKKFQVACLSEEDAWELFRKKVGEETLESD 338 (813)
Q Consensus 269 dv-~~~-~~~~~~~~~l~~~~~----~~s~ilv--TtR~~--~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 338 (813)
|+ |-+ ..+.-+.... .... ....|.. |.+.. .+.........|.|.||+..+...+.....+...
T Consensus 162 DlhWaD~~SL~lL~~lm-~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 162 DLHWADSASLKLLQLLM-DRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred cccccChhHHHHHHHHH-HhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 99 533 2222111111 0000 0112222 22221 1122223457899999999999999999987643
Q ss_pred hhHHHHHHHHHHHhCCcchHHHHHHHhhcCC------CCHHHHHHHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhH
Q 041248 339 HDIVELAQTVAKECGGLPLALITIGRAMAFK------KTAEEWIHAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETI 412 (813)
Q Consensus 339 ~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 412 (813)
....+..+.|+++..|+|+.+..+-..+... .+...|..-...+.. . +..+.+...+..-.+.||. ..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~-~~~~~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----L-ATTDAVVEFLAARLQKLPG-TT 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----c-hhhHHHHHHHHHHHhcCCH-HH
Confidence 2224678899999999999999888877663 344455543322221 1 1122355668889999999 79
Q ss_pred HHHHhhhccCCCCccccHHHHHHHHHHcCCcccccccchHhhHHHHHHHHHHhccccee-------cCCcE---EEeHHH
Q 041248 413 RSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEESDRFSAENQGYYIVGTLVHACLLEEV-------EDDKV---KMHDVV 482 (813)
Q Consensus 413 k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~-------~~~~~---~mHdlv 482 (813)
+..+...|++... |+.+.|...|- ......+...++.|....++... ..... ..||++
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 9999999998654 44555555552 13445555555555555555321 12222 578888
Q ss_pred HHHHH
Q 041248 483 RDMAL 487 (813)
Q Consensus 483 ~~~a~ 487 (813)
++.|-
T Consensus 379 qqaaY 383 (849)
T COG3899 379 QQAAY 383 (849)
T ss_pred HHHHh
Confidence 88774
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.86 E-value=2.2e-07 Score=95.43 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=127.2
Q ss_pred cccchhHHH---HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHc
Q 041248 159 TIVGLQSQL---EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 159 ~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 235 (813)
++||-+.-+ .-|.+.+..+......+||++|+||||||+.+.... ...|. .++...+-.+-++++++
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdlr~i~e-- 94 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDLREIIE-- 94 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHHHHHHH--
Confidence 345544332 234455666788889999999999999999999876 34443 23332222222222222
Q ss_pred CCCCCccCCCCHHHHHHHH-HHHhcCCcEEEEEecccC--cccccccccCCCCCCCCCcEEEE--EcCcccc---cccCC
Q 041248 236 GLVDDSWKSKSVEEKALDI-FRSLREKRFVLLLDDIWE--RVDLTKMGIPLSGPKNTTSKVVF--TTRFVDV---CGSME 307 (813)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ilv--TtR~~~v---~~~~~ 307 (813)
.- .....|++.+|.+|.|.. ..+.+.+ .+....|.-|+| ||.|+.. ....+
T Consensus 95 -----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l----Lp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 95 -----------------EARKNRLLGRRTILFLDEIHRFNKAQQDAL----LPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred -----------------HHHHHHhcCCceEEEEehhhhcChhhhhhh----hhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 22 223348999999999963 3344433 255677877777 7777654 22234
Q ss_pred CCcceEcCCCCHHHHHHHHHHhhCCCccCC---ChhH-HHHHHHHHHHhCCcchHH-HH--HHHhhcCCC---CHHHHHH
Q 041248 308 ADKKFQVACLSEEDAWELFRKKVGEETLES---DHDI-VELAQTVAKECGGLPLAL-IT--IGRAMAFKK---TAEEWIH 377 (813)
Q Consensus 308 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~---~~~~-~~~~~~i~~~c~GlPLai-~~--~~~~l~~~~---~~~~w~~ 377 (813)
...++.+++|+.++-.+++.+.+......- ...+ ++....++..++|---++ .. ++..+.... ..+..++
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 567899999999999999999543222111 1111 356778899998875443 22 222222211 2333333
Q ss_pred HHHHHhchhhhccCchHHHHhHHHHhhcCCCh
Q 041248 378 AIEVLRTSASEFAGLGEKVYRLLKFSYDSLQN 409 (813)
Q Consensus 378 ~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 409 (813)
.+..-........+..-++..++.-|...-.+
T Consensus 234 ~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 234 ILQRRSARFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred HHhhhhhccCCCcchHHHHHHHHHHhhccCCc
Confidence 33321111112112233688888888888776
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.86 E-value=4.8e-07 Score=101.97 Aligned_cols=207 Identities=14% Similarity=0.124 Sum_probs=122.1
Q ss_pred CCcccchhHHHHHHHHHHhc----C-CceEEEEEcCCCCcHHHHHHHHHhhcccC--CCCCC--EEEEEEecCccCHHHH
Q 041248 157 EPTIVGLQSQLEQVWRCLVE----E-SVGIIGLYGMGGVGKTTLLTHINNKFLES--PTSFD--CVIWAVVSKDLRLEKI 227 (813)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~~f~--~~~wv~~~~~~~~~~~ 227 (813)
++.+.||++++++|...|.. . ...++.|+|++|+|||+.++.|.+..... ..... .+++|.+........+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45688999999999988863 2 33577899999999999999998776211 11222 3567777766778888
Q ss_pred HHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc---CCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEE--EcCcc
Q 041248 228 QEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR---EKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVF--TTRFV 300 (813)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilv--TtR~~ 300 (813)
+..|.+++....+. ......+....++..+. +...+||||+++... .-+.+...+......+++|+| .|.+.
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999888533321 23334455556665542 234689999996422 111111111112223455443 33322
Q ss_pred cc--------cccCCCCcceEcCCCCHHHHHHHHHHhhCCCc-cCCChhHHHHHHHHHHHhCCcchHHHHHHHh
Q 041248 301 DV--------CGSMEADKKFQVACLSEEDAWELFRKKVGEET-LESDHDIVELAQTVAKECGGLPLALITIGRA 365 (813)
Q Consensus 301 ~v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 365 (813)
.. ...++ ...+..+|++.++-.+++..++.... .-.+.-++-+|+.++...|..=.||.++-.+
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 22 11221 23467799999999999999886422 1222233344444444445555666655433
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=1.3e-09 Score=116.62 Aligned_cols=239 Identities=24% Similarity=0.198 Sum_probs=154.4
Q ss_pred CCCCCceeEEEeeecccc-----ccccchhhcCCCcccEEEeccCCcccccc-------cCccccCCCCCCEEeecCCCC
Q 041248 536 VPTCPHLLTLFLDFNYKL-----EMITDGFFQCMPSLKVLKMSNCGHVKVLK-------LPFGMSKLGSLQLLDISHAGI 603 (813)
Q Consensus 536 ~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------lp~~i~~L~~L~~L~l~~~~i 603 (813)
+..+.+|+.|.++++. + ..++.. +...+.|+.|+++++ .+.. ++..+..+++|++|++++|.+
T Consensus 19 ~~~l~~L~~l~l~~~~-l~~~~~~~i~~~-l~~~~~l~~l~l~~~---~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 19 LPKLLCLQVLRLEGNT-LGEEAAKALASA-LRPQPSLKELCLSLN---ETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHHhhccEEeecCCC-CcHHHHHHHHHH-HhhCCCceEEecccc---ccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3556679999999543 3 223333 567788999999988 4442 345677788999999999987
Q ss_pred c-ccchhhcCCCC---CcEEeccCccccc-----ccchhhhcCC-CCCceeeccccccCCCCCCCccccccCCccchhHH
Q 041248 604 R-ELPEELKLLVN---LKCLNLRWTRMLN-----KIPRLLISNS-SWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHE 673 (813)
Q Consensus 604 ~-~lp~~~~~l~~---L~~L~l~~~~~l~-----~lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (813)
. ..+..+..+.+ |++|++++|. +. .+... +..+ ++|+.|++.+|.+++.. .......
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~-----------~~~~~~~ 160 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS-----------CEALAKA 160 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH-----------HHHHHHH
Confidence 6 44555555555 9999999985 33 22333 5667 89999999988776421 1223456
Q ss_pred hhcCCCCcEEEEEEcchhh--HHhhhcchhhhhcceeeeecccCCcccccc----cccccccccceeeecccCccceeee
Q 041248 674 LLGLRYLEVLELTLRSYDA--LQFFLSSNKLKSCIRSLFLNKLGGTKSIHA----TAFSDLKHLNELCIRSAVELEELKV 747 (813)
Q Consensus 674 l~~L~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~----~~l~~l~~L~~L~l~~~~~l~~l~~ 747 (813)
+..+++|+.|+++.|.... ...+.......++|+.|++++|. +..... ..+..+++|+.|++++|. +....+
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~ 238 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA 238 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH
Confidence 7788899999999887653 22222222223589999999874 221111 135567899999999864 332111
Q ss_pred cccccCCCCCCcccccCcceEeeccCcCCCc-----cc-chhcCCCCceEeeecCchh
Q 041248 748 DYTEIAPKRSEPFVFRSLHRVTMERCHKLKD-----LT-FLVCAPSLKSLSLYGCNAM 799 (813)
Q Consensus 748 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~-~l~~l~~L~~L~l~~c~~l 799 (813)
..+.. ... ...++|++|++.+|. +++ +. .+..+++|++++++++.--
T Consensus 239 ~~l~~--~~~--~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 239 AALAS--ALL--SPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHH--HHh--ccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 11110 000 024799999999985 331 22 3445689999999986543
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=3.8e-08 Score=98.73 Aligned_cols=151 Identities=16% Similarity=0.217 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
..+.+.++|++|+|||+|++.+++... .....+.|+.+.... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 446789999999999999999999862 122345666553110 0000 11112
Q ss_pred hcCCcEEEEEecccCc---ccccc-cccCCCCCCCCCcEEEE-EcCc---------ccccccCCCCcceEcCCCCHHHHH
Q 041248 258 LREKRFVLLLDDIWER---VDLTK-MGIPLSGPKNTTSKVVF-TTRF---------VDVCGSMEADKKFQVACLSEEDAW 323 (813)
Q Consensus 258 l~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~s~ilv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~ 323 (813)
+. +.-+|++||+|.. .+|+. +...+......+..+|| |++. +.+.+.+.....++++++++++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2348999999853 33432 21212011123555554 4443 244455555678999999999999
Q ss_pred HHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 324 ELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 324 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
+++.+.+.......+ +++..-|++.+.|..-.+..
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHH
Confidence 999998865443333 36777888888876655543
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=2.2e-10 Score=120.99 Aligned_cols=125 Identities=25% Similarity=0.332 Sum_probs=64.1
Q ss_pred EEeccccccccccc-CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecC
Q 041248 522 RLSLMQNQIEILSE-VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISH 600 (813)
Q Consensus 522 ~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~ 600 (813)
..+++.|.+..+|. ...|-.|..+.+. .+.+..+|.. ++.+..|.+|||+.| .++.+|..++.|+ |+.|-+++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy-~n~~r~ip~~-i~~L~~lt~l~ls~N---qlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILY-HNCIRTIPEA-ICNLEALTFLDLSSN---QLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHH-hccceecchh-hhhhhHHHHhhhccc---hhhcCChhhhcCc-ceeEEEec
Confidence 34444444444432 2334444444444 3334445444 455555555555555 5555555555544 55555555
Q ss_pred CCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCC
Q 041248 601 AGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 601 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
|+++.+|..++.+..|.+||.+.| .+..+|.. ++.|.+|+.|.+..|++..+
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred CccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhhhC
Confidence 555555555555555555555555 34555554 55555555555555544443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=2.6e-10 Score=120.41 Aligned_cols=191 Identities=20% Similarity=0.196 Sum_probs=143.5
Q ss_pred EEeccccccccccc---CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEee
Q 041248 522 RLSLMQNQIEILSE---VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDI 598 (813)
Q Consensus 522 ~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l 598 (813)
+|.|++...+.+|- ...+..-...+++ .+.+..+|.. ++.+..|..|.|..| .+..+|..+++|..|.||||
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDls-rNR~~elp~~-~~~f~~Le~liLy~n---~~r~ip~~i~~L~~lt~l~l 128 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLS-RNRFSELPEE-ACAFVSLESLILYHN---CIRTIPEAICNLEALTFLDL 128 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcc-ccccccCchH-HHHHHHHHHHHHHhc---cceecchhhhhhhHHHHhhh
Confidence 34444444444432 1334445567777 5677788877 777888999999999 89999999999999999999
Q ss_pred cCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCC
Q 041248 599 SHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLR 678 (813)
Q Consensus 599 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 678 (813)
+.|.+..+|..++.|+ |+.|-+++| +++.+|.+ |+.+..|.+|+.+.|.+...+ ..+++|.
T Consensus 129 s~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~slp----------------sql~~l~ 189 (722)
T KOG0532|consen 129 SSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQSLP----------------SQLGYLT 189 (722)
T ss_pred ccchhhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhhhch----------------HHhhhHH
Confidence 9999999999998886 899999988 68999998 998899999999988776654 5677777
Q ss_pred CCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccc
Q 041248 679 YLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELE 743 (813)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~ 743 (813)
.|+.|.+.-|....++.-.... .|.+|++++ +++..++. .|..|.+|++|.|.+ +-++
T Consensus 190 slr~l~vrRn~l~~lp~El~~L----pLi~lDfSc-Nkis~iPv-~fr~m~~Lq~l~Len-NPLq 247 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELCSL----PLIRLDFSC-NKISYLPV-DFRKMRHLQVLQLEN-NPLQ 247 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHhCC----ceeeeeccc-Cceeecch-hhhhhhhheeeeecc-CCCC
Confidence 7777777766665554433322 567777765 56667765 577788888888775 3344
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.78 E-value=5.5e-09 Score=111.70 Aligned_cols=252 Identities=19% Similarity=0.121 Sum_probs=127.7
Q ss_pred eeEEecccccccc-----cc-cCCCCCceeEEEeeeccccc-------cccchhhcCCCcccEEEeccCCccccc-ccCc
Q 041248 520 VRRLSLMQNQIEI-----LS-EVPTCPHLLTLFLDFNYKLE-------MITDGFFQCMPSLKVLKMSNCGHVKVL-KLPF 585 (813)
Q Consensus 520 ~~~l~l~~~~~~~-----l~-~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~l~~L~~L~l~~~~~~~~~-~lp~ 585 (813)
++.+.+.++.+.. ++ .....++++.|+++++. +. .++ ..+..+++|+.|++++| .+. ..+.
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~---~~~~~~~~ 99 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLL-QGLTKGCGLQELDLSDN---ALGPDGCG 99 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHH-HHHHhcCceeEEEccCC---CCChhHHH
Confidence 4555555554421 21 23455556666665332 22 111 23555677777777777 443 2233
Q ss_pred cccCCCC---CCEEeecCCCCc-----ccchhhcCC-CCCcEEeccCccccc-----ccchhhhcCCCCCceeecccccc
Q 041248 586 GMSKLGS---LQLLDISHAGIR-----ELPEELKLL-VNLKCLNLRWTRMLN-----KIPRLLISNSSWLRVLRMFAIGF 651 (813)
Q Consensus 586 ~i~~L~~---L~~L~l~~~~i~-----~lp~~~~~l-~~L~~L~l~~~~~l~-----~lp~~~i~~L~~L~~L~l~~~~~ 651 (813)
.+..+.. |++|++++|.+. .++..+..+ ++|+.|++++|. +. .++.. +..+++|++|++.+|.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 3333333 777777777655 223345555 677777777774 23 23333 55666777777776554
Q ss_pred CCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhH--HhhhcchhhhhcceeeeecccCCcccccccccc---
Q 041248 652 ENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDAL--QFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFS--- 726 (813)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~--- 726 (813)
.+.. .......+..+++|+.|+++.|.+... ..+......+++|+.|++++|. +....+..+.
T Consensus 178 ~~~~-----------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~ 245 (319)
T cd00116 178 GDAG-----------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASAL 245 (319)
T ss_pred chHH-----------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHH
Confidence 4210 111223455556777777776654321 2222222334567777777753 2221111111
Q ss_pred --cccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCc----cc-chhcC-CCCceEeeecC
Q 041248 727 --DLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKD----LT-FLVCA-PSLKSLSLYGC 796 (813)
Q Consensus 727 --~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~----l~-~l~~l-~~L~~L~l~~c 796 (813)
+.+.|+.|++++|. ++....... ......+++|+++++++|..-.. +. .+-.. +.|+.|++.+-
T Consensus 246 ~~~~~~L~~L~l~~n~-i~~~~~~~l-----~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 246 LSPNISLLTLSLSCND-ITDDGAKDL-----AEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred hccCCCceEEEccCCC-CCcHHHHHH-----HHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 23678888888753 221000000 01113557888888888653211 22 12233 67888877653
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=8e-09 Score=97.17 Aligned_cols=125 Identities=28% Similarity=0.337 Sum_probs=54.7
Q ss_pred CccceeEEecccccccccccCC-CCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccc-cCCCCC
Q 041248 516 GWENVRRLSLMQNQIEILSEVP-TCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGM-SKLGSL 593 (813)
Q Consensus 516 ~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i-~~L~~L 593 (813)
.....+.|++.+|.+..+.... .+.+|++|+++ ++.+..++. +..++.|+.|++++| .++.+++.+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls-~N~I~~l~~--l~~L~~L~~L~L~~N---~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLS-NNQITKLEG--LPGLPRLKTLDLSNN---RISSISEGLDKNLPNL 90 (175)
T ss_dssp -------------------S--TT-TT--EEE-T-TS--S--TT------TT--EEE--SS------S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccchhhhhcCCCEEECC-CCCCccccC--ccChhhhhhcccCCC---CCCccccchHHhCCcC
Confidence 3346789999999999887765 58899999999 777888864 788999999999999 898886555 368999
Q ss_pred CEEeecCCCCcccc--hhhcCCCCCcEEeccCcccccccc---hhhhcCCCCCceeecc
Q 041248 594 QLLDISHAGIRELP--EELKLLVNLKCLNLRWTRMLNKIP---RLLISNSSWLRVLRMF 647 (813)
Q Consensus 594 ~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~lp---~~~i~~L~~L~~L~l~ 647 (813)
+.|++++|.|..+- ..+..+++|++|++.+|+. ...+ ..++..+++|+.|+-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCE
Confidence 99999999887653 3467899999999999964 3333 3468899999999876
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.2e-09 Score=109.00 Aligned_cols=112 Identities=22% Similarity=0.189 Sum_probs=56.9
Q ss_pred CCCCceeEEEeeeccccccccc-hhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchh--hcCC
Q 041248 537 PTCPHLLTLFLDFNYKLEMITD-GFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEE--LKLL 613 (813)
Q Consensus 537 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~--~~~l 613 (813)
+++++|+...+. +..+...+. .....|++++.|||+.|-..+...+-.-+..|++|+.|+|+.|.+....++ -..+
T Consensus 118 sn~kkL~~IsLd-n~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLD-NYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeec-CccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 456667777666 444443332 235567777777777762112222233445567777777777655543322 2244
Q ss_pred CCCcEEeccCcccccccchhhhcCCCCCceeecccc
Q 041248 614 VNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAI 649 (813)
Q Consensus 614 ~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 649 (813)
.+|+.|.|+.|..-..--......+++|+.|++..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 566666666663211100111334555555555544
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.69 E-value=9e-07 Score=97.24 Aligned_cols=174 Identities=18% Similarity=0.186 Sum_probs=104.5
Q ss_pred CcccchhHHHHH---HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQ---VWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 158 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
..++|++..+.. +.+++..+....+.++|++|+||||+|+.+++.. ...| +.++....-..-.+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHH--
Confidence 468898887666 7777877777788999999999999999999876 2232 22222111111111121
Q ss_pred cCCCCCccCCCCHHHHHHHHHHH-hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEE--EcCcccc---cccC
Q 041248 235 IGLVDDSWKSKSVEEKALDIFRS-LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVF--TTRFVDV---CGSM 306 (813)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilv--TtR~~~v---~~~~ 306 (813)
...... ..+++.++++|+++.. ...+.+...+ ..+..++| ||.+... ....
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l----e~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV----EDGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh----hcCcEEEEEeCCCChhhhccHHHh
Confidence 111111 2457889999999853 2333333222 22444444 3443321 1112
Q ss_pred CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 307 EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 307 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
.....+++.+++.++.+.++.+.+.........-..+..+.|++.|+|.|..+..+
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 23467899999999999999987643110000112466788999999998766443
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=3.5e-09 Score=103.11 Aligned_cols=134 Identities=24% Similarity=0.366 Sum_probs=110.5
Q ss_pred ccCccceeEEeccccccccccc-CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCC
Q 041248 514 VEGWENVRRLSLMQNQIEILSE-VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGS 592 (813)
Q Consensus 514 ~~~~~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~ 592 (813)
...|..+..+++++|.|..+.. ..-.|.+|.|+++ .+.+..+.. +..+++|..||||+| .+.++-..-.+|-+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS-~N~i~~v~n--La~L~~L~~LDLS~N---~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILS-QNRIRTVQN--LAELPQLQLLDLSGN---LLAECVGWHLKLGN 353 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecc-ccceeeehh--hhhcccceEeecccc---hhHhhhhhHhhhcC
Confidence 3467889999999999998855 4568999999999 556766655 778999999999999 77776655556778
Q ss_pred CCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccch-hhhcCCCCCceeeccccccCCCC
Q 041248 593 LQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 593 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
.++|.|+.|.|..+ +++.+|.+|..||+++| +++.+.. ..||+|+.|++|.+.+|.+..++
T Consensus 354 IKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred EeeeehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99999999999988 68999999999999999 5666642 22899999999999998887665
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.63 E-value=1.8e-07 Score=94.27 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCcc
Q 041248 163 LQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSW 242 (813)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 242 (813)
.+..++.+.+++.......|.|+|+.|+|||+||+.+++... ......++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 345677777776556678999999999999999999998762 2233455555432210 00
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEecccCcc---ccc-ccccCCCCCCCCCcEEEEEcCcccc---------cccCCCC
Q 041248 243 KSKSVEEKALDIFRSLREKRFVLLLDDIWERV---DLT-KMGIPLSGPKNTTSKVVFTTRFVDV---------CGSMEAD 309 (813)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~~~~~l~~~~~~~s~ilvTtR~~~v---------~~~~~~~ 309 (813)
..+...+.+. -+||+||++... .|. .+...+......+.++|+||+.... ...+...
T Consensus 82 ---------~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 0111122222 389999996432 222 2222220111234578888875321 1122224
Q ss_pred cceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHH
Q 041248 310 KKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIG 363 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (813)
..++++++++++...++...+.......+ ++..+.|++.++|.|..+..+.
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 57899999999999998875532221222 3566778888888887775554
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=1.3e-08 Score=99.26 Aligned_cols=127 Identities=20% Similarity=0.189 Sum_probs=88.0
Q ss_pred CCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCce
Q 041248 564 MPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRV 643 (813)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 643 (813)
...|+.||||+| .|+.+-.++.-++.++.|++++|.|..+-. +..|++|++|||++| .+..+... -.+|-|.++
T Consensus 283 Wq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gw-h~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGW-HLKLGNIKT 356 (490)
T ss_pred Hhhhhhcccccc---chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhh-HhhhcCEee
Confidence 356778888888 777777777777888888888888877743 778888888888887 45555432 456777888
Q ss_pred eeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeeccc
Q 041248 644 LRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKL 714 (813)
Q Consensus 644 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 714 (813)
|.+.+|.+.+ +..|+.|=+|..|+++.|.+..+....+.. .++||+.|.|.++
T Consensus 357 L~La~N~iE~-----------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 357 LKLAQNKIET-----------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGN 409 (490)
T ss_pred eehhhhhHhh-----------------hhhhHhhhhheeccccccchhhHHHhcccc-cccHHHHHhhcCC
Confidence 8887665543 234556666777777777776666654433 3457777777664
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=4.4e-06 Score=94.08 Aligned_cols=193 Identities=17% Similarity=0.156 Sum_probs=109.7
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
.+++|.+..++.|.+++..++ ...+.++|..|+||||+|+.+.+..... ..++ +..+..-.....|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe-~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE-TGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc-cCCC-------CCCCcccHHHHHHhcCCC
Confidence 468999999999999998765 4466799999999999999988876211 1100 001111111122211000
Q ss_pred CCC---CccCCCCHHHHHHHHHH----HhcCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEcCccc-cc-cc
Q 041248 237 LVD---DSWKSKSVEEKALDIFR----SLREKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRFVD-VC-GS 305 (813)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~~~-v~-~~ 305 (813)
... +.......++....+.. -..++.-++|||+++... .+..+...+ -......++|+||.+.. +. ..
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtL-EEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTL-EEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHH-HhcCCCeEEEEEECChhhccchh
Confidence 000 00001111111111111 123455688999997542 344443333 22334677777666543 32 22
Q ss_pred CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc-hHHHHH
Q 041248 306 MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP-LALITI 362 (813)
Q Consensus 306 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~ 362 (813)
.+....|+++.++.++..+.+.+....+....+ .+..+.|++.++|.. -|+..+
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 234568999999999999999988765442222 366789999999865 455543
No 49
>PRK04195 replication factor C large subunit; Provisional
Probab=98.54 E-value=4.6e-06 Score=93.58 Aligned_cols=242 Identities=19% Similarity=0.188 Sum_probs=134.4
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
..++|.++.++.+.+|+.. ...+.+.|+|++|+||||+|+.++++. .++. +-++.+...... ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~-ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEV-IELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCE-EEEcccccccHH-HHHHHHH
Confidence 4689999999999999864 126789999999999999999999986 1332 233444332222 2222222
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc------ccccccCCCCCCCCCcEEEEEcCccc-ccc--
Q 041248 234 KIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD------LTKMGIPLSGPKNTTSKVVFTTRFVD-VCG-- 304 (813)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~s~ilvTtR~~~-v~~-- 304 (813)
...... .....++-+||+|+++.... +..+...+ . ..+..||+|+.+.. ...
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l-~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELI-K--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHH-H--cCCCCEEEeccCccccchhh
Confidence 211100 00113677999999975321 33333223 1 22344666654322 111
Q ss_pred cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCC-C--CHHHHHHHHHH
Q 041248 305 SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFK-K--TAEEWIHAIEV 381 (813)
Q Consensus 305 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~-~--~~~~w~~~~~~ 381 (813)
.......+++.+++.++....+.+.+.......+ .++...|++.++|..-.+......+... . +.+....+..
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 1123467899999999999998887754443333 3678899999999766554333323322 1 2222222110
Q ss_pred HhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhccCCCCccccHHHHHHHHHHcCCccc
Q 041248 382 LRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEE 445 (813)
Q Consensus 382 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 445 (813)
......++.++..-+..=....+...+..+ .++- ..+-.|+.+.+...
T Consensus 224 --------~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 --------RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred --------CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 111235666666555422211233322211 1222 35678999998765
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=5.6e-08 Score=107.07 Aligned_cols=121 Identities=30% Similarity=0.348 Sum_probs=71.5
Q ss_pred Eecccccc-cccccCCCCCceeEEEeeeccccccccchhhcCCC-cccEEEeccCCcccccccCccccCCCCCCEEeecC
Q 041248 523 LSLMQNQI-EILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMP-SLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISH 600 (813)
Q Consensus 523 l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~ 600 (813)
+....+.+ ........++.+..|.+. ++.+..+++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~-~n~i~~i~~~-~~~~~~nL~~L~l~~N---~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLD-NNNITDIPPL-IGLLKSNLKELDLSDN---KIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeccccccccCchhhhcccceeEEecC-CcccccCccc-cccchhhccccccccc---chhhhhhhhhccccccccccCC
Confidence 34444443 223333444566666666 4555566553 33342 6666777666 6666666666666777777777
Q ss_pred CCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccc
Q 041248 601 AGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIG 650 (813)
Q Consensus 601 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 650 (813)
|.+..+|...+.+++|+.|++++| .+..+|.. ++.+..|++|.+..|.
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNS 220 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCc
Confidence 666666666556666666766666 45666664 4455556666666553
No 51
>PRK08727 hypothetical protein; Validated
Probab=98.50 E-value=1.1e-06 Score=88.44 Aligned_cols=168 Identities=13% Similarity=0.090 Sum_probs=95.8
Q ss_pred cccc-hhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 159 TIVG-LQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 159 ~~vG-r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
.|++ -...+..+.....+.....+.|+|..|+|||.|++.+++... .....+.|+++.+ ....+.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-----
Confidence 3444 434444444443333446799999999999999999988762 2223455665322 111110
Q ss_pred CCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc---ccccc-cccCCCCCCCCCcEEEEEcCcccc---------cc
Q 041248 238 VDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER---VDLTK-MGIPLSGPKNTTSKVVFTTRFVDV---------CG 304 (813)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~s~ilvTtR~~~v---------~~ 304 (813)
...+.+. +.-+||+||+... ..|.. +...+......+..||+|++...- .+
T Consensus 86 ---------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 86 ---------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred ---------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 0111111 2348999999632 12221 111110111235679999985321 22
Q ss_pred cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 305 SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 305 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
.+.....+++++++.++-.+++.+++.......+ +++...|++.++|-.-.+
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 3334568899999999999999987654332222 356778888887655444
No 52
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=8.4e-06 Score=86.84 Aligned_cols=200 Identities=19% Similarity=0.245 Sum_probs=127.9
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
..+.+|+.+++++...|.. ....-+.|+|..|+|||+.++.+...........+ +++|++....+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 3489999999999988763 33444999999999999999999998832222222 789999999999999999999
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhc--CCcEEEEEecccCcccc--cccccCCCCCCCCCcEEEE--EcCcccc-----
Q 041248 234 KIGLVDDSWKSKSVEEKALDIFRSLR--EKRFVLLLDDIWERVDL--TKMGIPLSGPKNTTSKVVF--TTRFVDV----- 302 (813)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~~~~~l~~~~~~~s~ilv--TtR~~~v----- 302 (813)
.++... ..+.+..+....+.+.+. ++.+++|||+++....- +.+...+..+....++|++ .+-+...
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 997222 245666777777777774 58899999999743221 1111111111222454433 3333222
Q ss_pred ---cccCCCCcceEcCCCCHHHHHHHHHHhhC---CCccCCChhHHHHHHHHHHHhC-CcchHHHHH
Q 041248 303 ---CGSMEADKKFQVACLSEEDAWELFRKKVG---EETLESDHDIVELAQTVAKECG-GLPLALITI 362 (813)
Q Consensus 303 ---~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~-GlPLai~~~ 362 (813)
...++. ..+..+|-+.+|-.+++..++. ... ..+++.-+.+..++..-+ --=.||..+
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 223333 3488999999999999998874 222 222333344444444444 444555443
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.4e-08 Score=102.73 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=62.5
Q ss_pred ceeEEecccccccccc---cCCCCCceeEEEeeecccccccc--chhhcCCCcccEEEeccCCcccccccCc--cccCCC
Q 041248 519 NVRRLSLMQNQIEILS---EVPTCPHLLTLFLDFNYKLEMIT--DGFFQCMPSLKVLKMSNCGHVKVLKLPF--GMSKLG 591 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~---~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~lp~--~i~~L~ 591 (813)
++|.+++.++.+...+ ....|++++.|+++.| -+..+- ..+...+++|+.|+|+.| .+....+ .-..+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N---rl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN---RLSNFISSNTTLLLS 197 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc---cccCCccccchhhhh
Confidence 4555555555544433 2456667777776632 222211 223456677777777766 3322111 112456
Q ss_pred CCCEEeecCCCCc--ccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 592 SLQLLDISHAGIR--ELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 592 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
+|+.|.|+.|+++ ++-.....+++|+.|+|..|..+...-.. ..-+..|+.|++++|.+..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID 260 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc
Confidence 6666677666554 22222334556666666655321111111 2234455566666555443
No 54
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.49 E-value=2.1e-06 Score=86.36 Aligned_cols=173 Identities=15% Similarity=0.153 Sum_probs=111.1
Q ss_pred cccchhHHH---HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHc
Q 041248 159 TIVGLQSQL---EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 159 ~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 235 (813)
++||.+..+ .-|.+++..+....+.+||++|+||||||+.+...- +... ..+|..|....-..-++.|.++.
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccccchHHHHHHHHHH
Confidence 456655433 234455566788999999999999999999999875 2222 55677766554444445554432
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccC--cccccccccCCCCCCCCCcEEEE--EcCcccc---cccCCC
Q 041248 236 GLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWE--RVDLTKMGIPLSGPKNTTSKVVF--TTRFVDV---CGSMEA 308 (813)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ilv--TtR~~~v---~~~~~~ 308 (813)
. -...+.++|.+|.+|.|.. ..+.+.+ + +....|.-++| ||.+++. +.....
T Consensus 214 q-----------------~~~~l~krkTilFiDEiHRFNksQQD~f---L-P~VE~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 214 Q-----------------NEKSLTKRKTILFIDEIHRFNKSQQDTF---L-PHVENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred H-----------------HHHhhhcceeEEEeHHhhhhhhhhhhcc---c-ceeccCceEEEecccCCCccchhHHHHhc
Confidence 1 1123467899999999953 3333333 2 66677877776 7887765 233355
Q ss_pred CcceEcCCCCHHHHHHHHHHhhC---CCcc----CCCh---hHHHHHHHHHHHhCCcch
Q 041248 309 DKKFQVACLSEEDAWELFRKKVG---EETL----ESDH---DIVELAQTVAKECGGLPL 357 (813)
Q Consensus 309 ~~~~~l~~L~~~~~~~Lf~~~~~---~~~~----~~~~---~~~~~~~~i~~~c~GlPL 357 (813)
..++.|++|..++...++.+... .... -+.+ -...+.+-++..|+|-..
T Consensus 273 C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 67899999999999999988442 2110 1111 123567778888888654
No 55
>PTZ00202 tuzin; Provisional
Probab=98.46 E-value=4.5e-05 Score=80.21 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=99.6
Q ss_pred cCCCCCcccchhHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHH
Q 041248 153 ERPTEPTIVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQE 229 (813)
Q Consensus 153 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (813)
.|+..+.|+||+.++..+...|.+ +..+++.|.|++|+|||||++.+.... . ....+++.. +..+++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~---~~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G---MPAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C---ceEEEECCC---CHHHHHH
Confidence 344457899999999999999864 235689999999999999999999765 1 123333332 6799999
Q ss_pred HHHHHcCCCCCccCCCCHHHHHHHHHHHh-----c-CCcEEEEEecccCcccccccc---cCCCCCCCCCcEEEEEcCcc
Q 041248 230 DIGKKIGLVDDSWKSKSVEEKALDIFRSL-----R-EKRFVLLLDDIWERVDLTKMG---IPLSGPKNTTSKVVFTTRFV 300 (813)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~~~---~~l~~~~~~~s~ilvTtR~~ 300 (813)
.++.+||.... ....++...+.+.+ . +++.+||+-= .+..++..+. ..+ .....-|.|++----+
T Consensus 328 ~LL~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~l-a~drr~ch~v~evple 401 (550)
T PTZ00202 328 SVVKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVAL-ACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHH-HccchhheeeeeehHh
Confidence 99999997432 22233333333332 2 5666666532 1111111110 011 2233446666543333
Q ss_pred ccccc---CCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 301 DVCGS---MEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 301 ~v~~~---~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
++--. ...-..|.+++++.++|..+..+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 22111 1123468899999999999887765
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.44 E-value=3e-06 Score=91.28 Aligned_cols=193 Identities=12% Similarity=0.101 Sum_probs=107.5
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEecCccCHHHHHHHHHH---
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFD-CVIWAVVSKDLRLEKIQEDIGK--- 233 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~--- 233 (813)
..++|++..++.+.+++..+..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++.... .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 46899999999999998877666788999999999999999988762 12222 233444332110 00000000
Q ss_pred ---HcCCCCCccCCCCHHHHHHHHH----HHh--cCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEcCccc-
Q 041248 234 ---KIGLVDDSWKSKSVEEKALDIF----RSL--REKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRFVD- 301 (813)
Q Consensus 234 ---~l~~~~~~~~~~~~~~~~~~l~----~~l--~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~~~- 301 (813)
.++.. . .......+....+. ... .+.+-++|+||+.... ....+...+ ......+++|+||.+..
T Consensus 91 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~l-e~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTD-K-RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIM-EQYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhh-h-hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHH-HhccCCCeEEEEeCChhh
Confidence 00000 0 00001111222211 111 2344589999996432 122232222 22234567777765432
Q ss_pred cccc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 302 VCGS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 302 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
+... ......+.+.+++.++...++.+.+.......+ .+.++.+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2211 123457889999999999999887654432222 3578889999988765543
No 57
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.43 E-value=4.9e-05 Score=87.25 Aligned_cols=200 Identities=14% Similarity=0.055 Sum_probs=112.4
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC---CEEEEEEecCc---cCHHHHHHH-
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSF---DCVIWAVVSKD---LRLEKIQED- 230 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~~- 230 (813)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4679999999988888766666789999999999999999998765 222222 12345544321 122222111
Q ss_pred --------------HHHHcCCCC----------------CccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccc
Q 041248 231 --------------IGKKIGLVD----------------DSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTK 278 (813)
Q Consensus 231 --------------i~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~ 278 (813)
.+...+... ++. ..-....+..+.+.+.++++.++-|+.|.. ..|..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi-~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEI-GELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEecc-ccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 112222110 000 111233467788888888888887766543 34665
Q ss_pred cccCCCCCCCCCcEEEE--EcCcccc-cccC-CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCC
Q 041248 279 MGIPLSGPKNTTSKVVF--TTRFVDV-CGSM-EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGG 354 (813)
Q Consensus 279 ~~~~l~~~~~~~s~ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 354 (813)
+...+ ....+...|++ ||++... ...+ .....+.+.+++.+|.+.++.+.+.......+ .++.+.|++.+..
T Consensus 312 ik~~~-~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~ 387 (615)
T TIGR02903 312 IKKLF-EEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIE 387 (615)
T ss_pred hhhhc-ccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCc
Confidence 55444 33344444554 5664432 1111 12346789999999999999987653321111 2344444444443
Q ss_pred cchHHHHHH
Q 041248 355 LPLALITIG 363 (813)
Q Consensus 355 lPLai~~~~ 363 (813)
-+-|+..++
T Consensus 388 gRraln~L~ 396 (615)
T TIGR02903 388 GRKAVNILA 396 (615)
T ss_pred HHHHHHHHH
Confidence 344444433
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.1e-05 Score=90.07 Aligned_cols=190 Identities=15% Similarity=0.119 Sum_probs=108.2
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+...+.|.+++..++ ...+.++|+.|+||||+|+.+++.... .. ++. ...+..-...+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC-~~------~~~-~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC-ET------GVT-STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-Cc------CCC-CCCCccCHHHHHHhcCCC
Confidence 468999999999999998765 457789999999999999999887621 00 000 001111111122211100
Q ss_pred CCC---CccCCCCHHHHHHHHHHH-----hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCcc-ccc-c
Q 041248 237 LVD---DSWKSKSVEEKALDIFRS-----LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFV-DVC-G 304 (813)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~-~ 304 (813)
... +.......++. +.+... ..+++-++|+|++... .....+...+ .....+.++|++|.+. .+. .
T Consensus 87 pDviEIDAAs~~~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtL-EEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 87 IDLIEIDAASRTKVEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTL-EEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHH-hcCCCCcEEEEEECChHhhhHH
Confidence 000 00001112211 111111 2356678999999743 2333343333 2223455677666543 221 1
Q ss_pred cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 305 SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 305 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
.......+++++++.++..+.+.+.+.......+ .+....|++.++|.+..+.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 1234568999999999999999887754432222 3567889999999875443
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=5.3e-06 Score=87.79 Aligned_cols=176 Identities=13% Similarity=0.167 Sum_probs=111.9
Q ss_pred cccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCCCEEEEEEe-cCccCHHHHHHHHHH
Q 041248 159 TIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFL---ESPTSFDCVIWAVV-SKDLRLEKIQEDIGK 233 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~---~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~ 233 (813)
.++|-+..++.+...+..+. .....++|+.|+||||+|+.+++... ....++|...|... +....+++ .+++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 57899999999999997764 45678999999999999999988641 12356676666542 22223333 222333
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEeccc--CcccccccccCCCCCCCCCcEEEEEcCccccc--ccCCCC
Q 041248 234 KIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIW--ERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVC--GSMEAD 309 (813)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~--~~~~~~ 309 (813)
.+.... ..+++-++|+|+++ +...+..+...+ .....++.+|++|.+.+.. ...+..
T Consensus 84 ~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~L-Eepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 84 EVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTI-EEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHh-cCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 222111 12455567777764 444556665555 3445678888877654422 112345
Q ss_pred cceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 310 KKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
..+++.++++++....+.+...... .+.++.++..++|.|.-+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHH
Confidence 6899999999999888876643211 23467889999999876543
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.42 E-value=1.9e-06 Score=80.14 Aligned_cols=123 Identities=24% Similarity=0.166 Sum_probs=73.3
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCC
Q 041248 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDD 240 (813)
Q Consensus 161 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 240 (813)
+|++..++.+...+.....+.+.|+|.+|+|||++++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888899999988776678999999999999999999999872 222345666554433222211111000
Q ss_pred ccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc-----ccccccccCCCCC---CCCCcEEEEEcCccc
Q 041248 241 SWKSKSVEEKALDIFRSLREKRFVLLLDDIWER-----VDLTKMGIPLSGP---KNTTSKVVFTTRFVD 301 (813)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~~~~l~~~---~~~~s~ilvTtR~~~ 301 (813)
............++.++|+||++.. ..+....... .. ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETL-NDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhc-CceeccCCCeEEEEecCccc
Confidence 0011112223456789999999843 1222222222 11 135778888888544
No 61
>PF13173 AAA_14: AAA domain
Probab=98.40 E-value=4.9e-07 Score=81.80 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
.+++.|.|+.|+||||++++++.+. . ....+++++.......... ..+ ....+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999886 1 3455677765543221100 000 222333333
Q ss_pred cCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCccccccc------CCCCcceEcCCCCHHHH
Q 041248 259 REKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVCGS------MEADKKFQVACLSEEDA 322 (813)
Q Consensus 259 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 322 (813)
..++.++++|++....+|......+ .+.....+|++|+.+...... .+....++|.||+-.|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l-~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFL-VDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHH-HHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3477889999998888887766555 444467899999987655421 12334688999987763
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.40 E-value=6.2e-06 Score=79.38 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=90.3
Q ss_pred CcccchhHHHHHHHHHHh-----cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLV-----EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIG 232 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (813)
.+|+|.++-++.+.-++. ++....+.+||++|+||||||.-+++.. ...|. +.+...-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHH
Confidence 578999988887655543 2356789999999999999999999987 34442 2221110011111 1122
Q ss_pred HHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--cc-------ccccccCCCCCC-----------CCCcE
Q 041248 233 KKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VD-------LTKMGIPLSGPK-----------NTTSK 292 (813)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-------~~~~~~~l~~~~-----------~~~s~ 292 (813)
.. + +++-+|.+|++..- .. .++....+.-.. .+-+-
T Consensus 97 ~~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 97 TN-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred Hh-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 11 1 23346666777431 00 111110000011 11234
Q ss_pred EEEEcCcccccccCCC--CcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHh
Q 041248 293 VVFTTRFVDVCGSMEA--DKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRA 365 (813)
Q Consensus 293 ilvTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 365 (813)
|=.|||...+...+.. .-..+|+..+.+|-.++..+.+..-...- -++.+.+|++.+.|-|--..-+-..
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4468987665443322 23458999999999999998775443222 2478999999999999765544433
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=2.4e-07 Score=102.03 Aligned_cols=172 Identities=26% Similarity=0.297 Sum_probs=125.6
Q ss_pred CccceeEEecccccccccccCCCCC--ceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCC
Q 041248 516 GWENVRRLSLMQNQIEILSEVPTCP--HLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSL 593 (813)
Q Consensus 516 ~~~~~~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L 593 (813)
....+..+.+..+.+..++...... +|+.|+++ .+.+..++.. +..+++|+.|++++| .+..+|...+.+..|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-~N~i~~l~~~-~~~l~~L~~L~l~~N---~l~~l~~~~~~~~~L 188 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS-DNKIESLPSP-LRNLPNLKNLDLSFN---DLSDLPKLLSNLSNL 188 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhccccccc-ccchhhhhhh-hhccccccccccCCc---hhhhhhhhhhhhhhh
Confidence 3356888888888888887765554 89999998 6667777543 778899999999999 888888777788899
Q ss_pred CEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHH
Q 041248 594 QLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHE 673 (813)
Q Consensus 594 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (813)
+.|++++|.+..+|..+..+..|+.|.+++|. +...+.. +.+++++..|.+..|..... +..
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~~~----------------~~~ 250 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLEDL----------------PES 250 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceeeec----------------cch
Confidence 99999999999999887777789999998884 3445554 78888888888765554331 234
Q ss_pred hhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeeccc
Q 041248 674 LLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKL 714 (813)
Q Consensus 674 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 714 (813)
++.+++|+.|+++.|....+..+ ....+++.|++++.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~~----~~~~~l~~L~~s~n 287 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISSL----GSLTNLRELDLSGN 287 (394)
T ss_pred hccccccceeccccccccccccc----cccCccCEEeccCc
Confidence 56666677777777666555441 11236666776664
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.38 E-value=3.4e-08 Score=101.13 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=80.9
Q ss_pred chhHHhh-cCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccc-cccccceeeecccCccceee
Q 041248 669 VLVHELL-GLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFS-DLKHLNELCIRSAVELEELK 746 (813)
Q Consensus 669 ~~~~~l~-~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~-~l~~L~~L~l~~~~~l~~l~ 746 (813)
.++..|+ +..+|+.|.+..+.......+.......++|+.+.+..|.......+..++ +++.|++|.+++|..+.+..
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g 389 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG 389 (483)
T ss_pred HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh
Confidence 3455553 456788887775553221111112222357788887776544333222232 57888888888887666432
Q ss_pred ecccccCCCCCCcccccCcceEeeccCcCCCc--ccchhcCCCCceEeeecCchhhhhhccC
Q 041248 747 VDYTEIAPKRSEPFVFRSLHRVTMERCHKLKD--LTFLVCAPSLKSLSLYGCNAMEEIISVG 806 (813)
Q Consensus 747 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~c~~l~~i~~~~ 806 (813)
+..+. ....++..|..+.+++|+.+++ +..+...++|+.+++.+|..+++-..+.
T Consensus 390 i~~l~-----~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 390 IRHLS-----SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hhhhh-----hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 22211 1123677888899999988776 3466778899999999998877654443
No 65
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=4.9e-06 Score=95.59 Aligned_cols=193 Identities=16% Similarity=0.144 Sum_probs=107.5
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++..... ...... .+..-.....+.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce-~~~~~~-------pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE-QGVTAT-------PCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc-cCCCCC-------CCCCchHHHHHhcCCC
Confidence 46899999999999998876654 45899999999999999999876211 110000 0000000111111000
Q ss_pred -----CCCC-ccCCCCHHHHHHHHH-HHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEc-Ccccccc-c
Q 041248 237 -----LVDD-SWKSKSVEEKALDIF-RSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTT-RFVDVCG-S 305 (813)
Q Consensus 237 -----~~~~-~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTt-R~~~v~~-~ 305 (813)
+... ........+++..+. ....+++-++|+|++... ..+..+...+ -......++|++| ....+.. .
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtL-EEPP~~vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTL-EEPPEHVKFLLATTDPQKLPVTV 166 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHH-hccCCCeEEEEECCCchhchHHH
Confidence 0000 000001111222221 112467789999999643 3344443333 2222345555544 4444432 1
Q ss_pred CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 306 MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 306 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
......|++++|+.++..+.+.+.+.......+ .+.+..|++.++|.|--+..+
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 233578999999999999999887644321222 356788999999988644433
No 66
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=5.1e-07 Score=69.54 Aligned_cols=56 Identities=32% Similarity=0.513 Sum_probs=26.1
Q ss_pred cccEEEeccCCcccccccC-ccccCCCCCCEEeecCCCCcccch-hhcCCCCCcEEeccCc
Q 041248 566 SLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDISHAGIRELPE-ELKLLVNLKCLNLRWT 624 (813)
Q Consensus 566 ~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~ 624 (813)
+|++|++++| .++.+| ..+.++++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n---~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN---KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS---TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC---CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444 444443 234444444444444444444443 2445555555555544
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.4e-08 Score=97.53 Aligned_cols=181 Identities=21% Similarity=0.239 Sum_probs=88.9
Q ss_pred cccEEEeccCCccccc--ccCccccCCCCCCEEeecCCCCc-ccchhhcCCCCCcEEeccCcccccccchh-hhcCCCCC
Q 041248 566 SLKVLKMSNCGHVKVL--KLPFGMSKLGSLQLLDISHAGIR-ELPEELKLLVNLKCLNLRWTRMLNKIPRL-LISNSSWL 641 (813)
Q Consensus 566 ~L~~L~l~~~~~~~~~--~lp~~i~~L~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-~i~~L~~L 641 (813)
.|++|||++. .++ .+-.-+..+..|+.|+|.++.+. .+-..+.+=.+|+.|+|+.|..+...... ++.+|+.|
T Consensus 186 Rlq~lDLS~s---~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNS---VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchh---heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 4777787776 444 33334455666666666666554 23334555566667777666544333211 23455555
Q ss_pred ceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCC-cccc
Q 041248 642 RVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGG-TKSI 720 (813)
Q Consensus 642 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~l 720 (813)
+.|+++ ++....-..-.-.....++|..|+|+||.. +...
T Consensus 263 ~~LNls---------------------------------------Wc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s 303 (419)
T KOG2120|consen 263 DELNLS---------------------------------------WCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS 303 (419)
T ss_pred hhcCch---------------------------------------HhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh
Confidence 555555 333221110000011123556666666431 1111
Q ss_pred ccccc-ccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCc--ccchhcCCCCceEeeecCc
Q 041248 721 HATAF-SDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKD--LTFLVCAPSLKSLSLYGCN 797 (813)
Q Consensus 721 ~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~c~ 797 (813)
.++.+ ..+++|..|+|+.|..++.-....+ ..|+.|++|+++.|..+-- +-.+...|+|.+|++-+|-
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~---------~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF---------FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCchHHHHH---------HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 11111 2456666667666665553211111 2566677777776654311 1134556677777766664
No 68
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.36 E-value=6.9e-06 Score=87.70 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=104.2
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe--cCccCHHHHHHHHHHHc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVV--SKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l 235 (813)
.+++|++..++.+..++.....+.+.++|..|+||||+|+.+.+... ...+.. .++.+ +.......+...+....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~-~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRE-NFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCcccc-ceEEeccccccchHHHHHHHHHHH
Confidence 45899999999999999876666789999999999999999998762 122211 12222 22211111111111110
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEcCcc-ccccc-CCCCcc
Q 041248 236 GLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRFV-DVCGS-MEADKK 311 (813)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~~~-~~~~~~ 311 (813)
.. .+ .....+-++++|++.... ....+...+ ......+.+|+++... .+... ......
T Consensus 94 ~~-~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~l-e~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 94 RT-AP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTM-EMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred hc-CC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHH-hcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 00 00 001235689999986432 222333223 2223446677666432 22111 122346
Q ss_pred eEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 312 FQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 312 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
++++++++++....+...+......-+ .+.+..+++.++|.+.-+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 899999999999998887754432222 357888999999987654
No 69
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.36 E-value=4.3e-06 Score=84.24 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=97.9
Q ss_pred CcccchhH-HHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQS-QLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
+.++|... .+..+.++......+.+.|+|+.|+|||+|++.+++... .....+.++.+.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh-------------
Confidence 34456333 344444444444557899999999999999999998762 2223456665532100
Q ss_pred CCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc---cccccc-ccCCCCCCCCC-cEEEEEcCccc---------c
Q 041248 237 LVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER---VDLTKM-GIPLSGPKNTT-SKVVFTTRFVD---------V 302 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~-~~~l~~~~~~~-s~ilvTtR~~~---------v 302 (813)
...+ +.+.+.. --++++||+... ..|+.. ...+......| .++|+||+... +
T Consensus 87 ---------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 0011 1111111 137889999542 233322 11110111123 47899998542 2
Q ss_pred cccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 303 CGSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 303 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
.+.+.....++++++++++-.+++.+++......-+ +++..-|++.+.|..-++.
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHH
Confidence 334445678999999999999999886654332222 3677788888887655543
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=98.34 E-value=4.6e-06 Score=88.41 Aligned_cols=179 Identities=14% Similarity=0.117 Sum_probs=104.2
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFD-CVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.++.++.|..++..+..+.+.++|++|+||||+|+.+++... ...|. .++-++.+...... ..+++++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 45789998888888888776666788999999999999999998761 22222 12222222222222 1222222111
Q ss_pred CCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEcCcc-cccc-cCCCCcce
Q 041248 237 LVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRFV-DVCG-SMEADKKF 312 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~~-~~~~~~~~ 312 (813)
.... ..-.++.-++++|+++... ....+...+ ......+++++++... .+.. .......+
T Consensus 90 ~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~l-E~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 90 QKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTM-EIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred hccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHH-hcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 0000 0002456689999997532 222222222 2223456677666432 2211 11234578
Q ss_pred EcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchH
Q 041248 313 QVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLA 358 (813)
Q Consensus 313 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (813)
+++++++++....+...+......-+ .+....|++.++|..-.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 99999999999999888755442222 35678899999986643
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=4.4e-07 Score=69.89 Aligned_cols=59 Identities=32% Similarity=0.383 Sum_probs=53.1
Q ss_pred CCCCEEeecCCCCcccch-hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccc
Q 041248 591 GSLQLLDISHAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIG 650 (813)
Q Consensus 591 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 650 (813)
++|++|++++|+++.+|. .+..+++|++|++++| .+..+|++.+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999986 5789999999999988 6789988889999999999999775
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.33 E-value=3.4e-08 Score=101.14 Aligned_cols=241 Identities=15% Similarity=0.125 Sum_probs=139.8
Q ss_pred CCCCceeEEEeeecccccccc-chhhcCCCcccEEEeccCCcccccc--cCccccCCCCCCEEeecCC-CCcc--cchhh
Q 041248 537 PTCPHLLTLFLDFNYKLEMIT-DGFFQCMPSLKVLKMSNCGHVKVLK--LPFGMSKLGSLQLLDISHA-GIRE--LPEEL 610 (813)
Q Consensus 537 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--lp~~i~~L~~L~~L~l~~~-~i~~--lp~~~ 610 (813)
..||++..|.+.+|..+++.. ..+-..++.|++|++..|. .++. +-.....+++|+||++++| .|+. +-.-.
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~--~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS--SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc--hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 567888888877776554432 2234567888888888864 3332 2233445777888888877 3443 21223
Q ss_pred cCCCCCcEEeccCcccccccchhhhc----CCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEE
Q 041248 611 KLLVNLKCLNLRWTRMLNKIPRLLIS----NSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELT 686 (813)
Q Consensus 611 ~~l~~L~~L~l~~~~~l~~lp~~~i~----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 686 (813)
..+.+|+.+-+++|.. ++.+.+. .+.-+-.+++..+. .+. +......-..+..|+.|..+
T Consensus 239 rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~--~lT-----------D~~~~~i~~~c~~lq~l~~s 302 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCN--QLT-----------DEDLWLIACGCHALQVLCYS 302 (483)
T ss_pred ccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhc--ccc-----------chHHHHHhhhhhHhhhhccc
Confidence 3455566666666632 3322222 12223333332221 110 11111222345667777766
Q ss_pred EcchhhHHhhhcchhhhhcceeeeecccCCcccccccccc-cccccceeeecccCccceeeecccccCCCCCCcccccCc
Q 041248 687 LRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFS-DLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSL 765 (813)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L 765 (813)
.+.......+........+|+.|.+.+|..++...+..++ +.++|+.+++.+|.......+ .....+++.|
T Consensus 303 ~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL--------~sls~~C~~l 374 (483)
T KOG4341|consen 303 SCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL--------ASLSRNCPRL 374 (483)
T ss_pred CCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH--------hhhccCCchh
Confidence 5443332333333333458888999888877666654444 678899988888765442211 1122489999
Q ss_pred ceEeeccCcCCCccc--c----hhcCCCCceEeeecCchhhhhh
Q 041248 766 HRVTMERCHKLKDLT--F----LVCAPSLKSLSLYGCNAMEEII 803 (813)
Q Consensus 766 ~~L~l~~c~~l~~l~--~----l~~l~~L~~L~l~~c~~l~~i~ 803 (813)
+.|+++.|...++.. . -..+..|..|.+++|+.+++..
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 999999998877752 1 2357889999999999987654
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.3e-05 Score=86.32 Aligned_cols=189 Identities=19% Similarity=0.205 Sum_probs=105.4
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+..++.+...+..++ ...+.++|+.|+||||+|+.+++... -..... ..+...-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 468999999999999887654 35678999999999999999988762 100000 000000011111111100
Q ss_pred CCCCcc---CCCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEcCcc-ccccc
Q 041248 237 LVDDSW---KSKSVEEKALDIFRSL-----REKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRFV-DVCGS 305 (813)
Q Consensus 237 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~~~ 305 (813)
...... .....++ +..+.+.+ .+++-++|+|++.... .+..+...+ .......++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~l-Ee~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTL-EEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHH-hcCCCCeEEEEEcCChHhhhHH
Confidence 000000 0011111 22222221 2455699999997543 344443333 2333456666666433 23221
Q ss_pred -CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 306 -MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 306 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
.+....+++.+++.++..+.+...+......-+ ++.++.|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 223467899999999999998886644321122 356788999999988644
No 74
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=1.2e-06 Score=79.72 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=78.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC--CCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES--PTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIF 255 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (813)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+.+++..... ..+..+....+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 45789999999999999999999876110 00134577999888889999999999999876532 356677778888
Q ss_pred HHhcCCc-EEEEEecccCc---ccccccccCCCCCCCCCcEEEEEcCc
Q 041248 256 RSLREKR-FVLLLDDIWER---VDLTKMGIPLSGPKNTTSKVVFTTRF 299 (813)
Q Consensus 256 ~~l~~k~-~LlVlDdv~~~---~~~~~~~~~l~~~~~~~s~ilvTtR~ 299 (813)
+.+...+ .+||+|++... ..++.+.... . ..+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~--~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLL--N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT--C-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH--h-CCCCeEEEEECh
Confidence 8887655 49999999653 2223332222 2 566777776654
No 75
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.1e-05 Score=89.83 Aligned_cols=191 Identities=20% Similarity=0.125 Sum_probs=108.9
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
.+++|-+..++.|..++..+.. ..+.++|++|+||||+|+.+++... -...+...+|.|.+...-. .....-...++
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~~i~-~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCLAVR-RGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhHHHh-cCCCCceEEec
Confidence 4679999999999888887654 4569999999999999999988762 1122222344332211000 00000000000
Q ss_pred CCCCccCCCCHHHHHHHHHHH-----hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEc-Cccccccc-CC
Q 041248 237 LVDDSWKSKSVEEKALDIFRS-----LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTT-RFVDVCGS-ME 307 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTt-R~~~v~~~-~~ 307 (813)
.. .....++ +..+.+. ..+++-++|+|+++.. ..+..+...+ ......+.+|++| ....+... ..
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~L-Eep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTL-EEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHH-HhCCCCEEEEEEcCChhhCChHHhc
Confidence 00 0111111 1222222 2356679999999743 3344444444 2223344555444 43333222 23
Q ss_pred CCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 308 ADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 308 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
....+++.+++.++..+.+.+.+.......+ .+.+..|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 3568999999999999999987754432222 357889999999988644
No 76
>PF14516 AAA_35: AAA-like domain
Probab=98.30 E-value=0.0006 Score=72.46 Aligned_cols=203 Identities=15% Similarity=0.160 Sum_probs=119.5
Q ss_pred CCCcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc-----cCHHHHH--
Q 041248 156 TEPTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD-----LRLEKIQ-- 228 (813)
Q Consensus 156 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~-- 228 (813)
..+.+|.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+... . ..+ .++++++... .+...++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~-~-~~~-~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ-Q-QGY-RCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH-H-CCC-EEEEEEeecCCCcccCCHHHHHHH
Confidence 3467889996777777777653 46899999999999999999988872 2 233 3456765442 2445444
Q ss_pred --HHHHHHcCCCCCc---cC--CCCHHHHHHHHHHHh---cCCcEEEEEecccCcccc----cccccCCC---------C
Q 041248 229 --EDIGKKIGLVDDS---WK--SKSVEEKALDIFRSL---REKRFVLLLDDIWERVDL----TKMGIPLS---------G 285 (813)
Q Consensus 229 --~~i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~----~~~~~~l~---------~ 285 (813)
..+.+++++...- +. ..+.......+.+.+ .+++.+|++|+|+...+. .++...++ +
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 4455555543210 00 111222223333332 268999999999743211 11111000 0
Q ss_pred CCCCCcEEEEEcCccccc-----ccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 286 PKNTTSKVVFTTRFVDVC-----GSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 286 ~~~~~s~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
....-+-|++.+...... +.+.....++|++++.+|...|+.+....-. ....++|...+||+|.-+.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHH
Confidence 011111222222111111 1112345789999999999999988743321 1338899999999999999
Q ss_pred HHHHhhcCC
Q 041248 361 TIGRAMAFK 369 (813)
Q Consensus 361 ~~~~~l~~~ 369 (813)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999998763
No 77
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.30 E-value=1.5e-06 Score=87.24 Aligned_cols=91 Identities=18% Similarity=0.099 Sum_probs=62.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc--cCHHHHHHHHHHHcCCCCCccCCCCHH------H
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD--LRLEKIQEDIGKKIGLVDDSWKSKSVE------E 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~------~ 249 (813)
....++|+|++|+|||||++.+++.. . ..+|+.++|+.+.+. .++.++++.+...+-...- +..... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~~~~~~~~~ 90 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPERHVQVAEM 90 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHHHHHHHHHH
Confidence 45689999999999999999999987 3 348999999997776 7899999998332211110 111111 1
Q ss_pred HHHHHHHH-hcCCcEEEEEecccC
Q 041248 250 KALDIFRS-LREKRFVLLLDDIWE 272 (813)
Q Consensus 250 ~~~~l~~~-l~~k~~LlVlDdv~~ 272 (813)
........ -.+++.++++|++..
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHH
Confidence 11122221 358999999999953
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=8.7e-06 Score=90.54 Aligned_cols=193 Identities=16% Similarity=0.145 Sum_probs=108.3
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCC--CCCEEEEEEecCccCHHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPT--SFDCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
.++||-+..++.|.+++..++. ..+.++|..|+||||+|+.+.+....... ..... +..+..-.....|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHHHHHcC
Confidence 4689999999999999987654 45688999999999999999887621000 00000 0011111112222110
Q ss_pred c-----CCCCCccCCCCHHHHHHHHHH----HhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcE-EEEEcCcccc
Q 041248 235 I-----GLVDDSWKSKSVEEKALDIFR----SLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSK-VVFTTRFVDV 302 (813)
Q Consensus 235 l-----~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~-ilvTtR~~~v 302 (813)
- .+... .....++....+.. -..++.-++|+|+++.. ..+..+...+ -....+.+ |++||....+
T Consensus 91 ~hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTL-EEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 91 RFVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTL-EEPPEHVKFILATTDPQKI 167 (700)
T ss_pred CCCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhh-ccCCCCceEEEEeCChHhh
Confidence 0 00000 01112222111111 12456679999999753 3344443333 22223445 4555555544
Q ss_pred cc-cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 303 CG-SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 303 ~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
.. ..+....|.++.++.++..+.+.+.+.......+ .+..+.|++.++|.|.-...
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 32 2234568999999999999999887654332222 24568899999999865443
No 79
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.27 E-value=1.5e-06 Score=84.53 Aligned_cols=45 Identities=29% Similarity=0.404 Sum_probs=32.5
Q ss_pred cccchhHHHHHHHHHHh---cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLV---EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|+||+++++++...+. ....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999993 2457899999999999999999999887
No 80
>PRK09087 hypothetical protein; Validated
Probab=98.27 E-value=1.1e-05 Score=80.50 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=86.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
..+.+.|+|..|+|||+|++.++... . ..+++.. .+..++.. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-----------------------h
Confidence 45679999999999999999988764 1 1133221 11111111 1
Q ss_pred hcCCcEEEEEecccCc----ccccccccCCCCCCCCCcEEEEEcCcc---------cccccCCCCcceEcCCCCHHHHHH
Q 041248 258 LREKRFVLLLDDIWER----VDLTKMGIPLSGPKNTTSKVVFTTRFV---------DVCGSMEADKKFQVACLSEEDAWE 324 (813)
Q Consensus 258 l~~k~~LlVlDdv~~~----~~~~~~~~~l~~~~~~~s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 324 (813)
+.+ -++++||+... ..+-++...+ ...|..||+|++.. .+.+.+.....+++++++.++-.+
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~---~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSV---RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHH---HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 111 27888999532 1222222111 23366788888732 233444566789999999999999
Q ss_pred HHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 325 LFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 325 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
++.+.+......-+ +++..-|++.+.|..-++..
T Consensus 161 iL~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 161 VIFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 99998865432222 36778888888877766643
No 81
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=3.2e-05 Score=82.58 Aligned_cols=197 Identities=13% Similarity=0.043 Sum_probs=109.0
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCE-EEEEEecCccCHHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP-TSFDC-VIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~-~~f~~-~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
..++|.+..++.+.+.+..+.. ..+.++|+.|+||+|+|..+.+...-.. ...+. ..-.............+.+...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 5789999999999999987654 4688999999999999999887762111 00000 0000000000001122222111
Q ss_pred cCCC-------CCcc-----CCCCHHHHHHHHHHHh-----cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEE
Q 041248 235 IGLV-------DDSW-----KSKSVEEKALDIFRSL-----REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVF 295 (813)
Q Consensus 235 l~~~-------~~~~-----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilv 295 (813)
--.. .+.. .....++ ++.+.+.+ .+++.++|+||++.. .....+...+ .....++.+|+
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L-Eepp~~~~~IL 176 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL-EEPPARSLFLL 176 (365)
T ss_pred CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH-hcCCCCeEEEE
Confidence 1000 0000 0111222 33444443 256779999999643 3333333333 22234555666
Q ss_pred EcCccc-cc-ccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHH
Q 041248 296 TTRFVD-VC-GSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIG 363 (813)
Q Consensus 296 TtR~~~-v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (813)
+|.+.. +. ........+.+.+++.++..+++.+...... ......++..++|.|+....+.
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 665543 32 2223456899999999999999988653211 1223688999999998665443
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.3e-05 Score=86.93 Aligned_cols=190 Identities=15% Similarity=0.091 Sum_probs=107.6
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++... ....... ..+..... ...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~~--~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIGN--EPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccCc--cccCCCcH----HHHHHccCC
Confidence 46899999999999998877654 589999999999999999998762 1111000 00000001 122222111
Q ss_pred CCCCccC---CC---CHHHHHHHHHH-HhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-EEcCcccccc-c
Q 041248 237 LVDDSWK---SK---SVEEKALDIFR-SLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV-FTTRFVDVCG-S 305 (813)
Q Consensus 237 ~~~~~~~---~~---~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il-vTtR~~~v~~-~ 305 (813)
...-... .. +..++...+.. ...++.-++|+|++... ..+..+...+ -.......+| .||....+.. .
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtL-EEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTL-EEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHh-hcCCCceEEEeecCChhhccHHH
Confidence 1000000 01 11122222221 12456679999999743 3445544333 2222344444 4555444432 2
Q ss_pred CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 306 MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 306 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
......|.+.+++.++..+.+.+.+......-+ .+....|++.++|.+.-+
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHH
Confidence 234567999999999999998887654432222 356789999999988543
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.8e-05 Score=87.37 Aligned_cols=185 Identities=20% Similarity=0.221 Sum_probs=105.0
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCC-C-----------------CCEEEEEEe
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPT-S-----------------FDCVIWAVV 218 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-~-----------------f~~~~wv~~ 218 (813)
..++|.+...+.+...+..+.. ..+.++|++|+||||+|+.+++....... . +..+..+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 4689999888888888877665 45789999999999999999887621100 0 001111221
Q ss_pred cCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEE-
Q 041248 219 SKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVF- 295 (813)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilv- 295 (813)
+.......+ +++...... ....+++-++|+|+++.. .....+...+ ........+|+
T Consensus 94 a~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~L-E~p~~~vv~Ila 153 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTL-EEPPSHVVFVLA 153 (472)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHH-HhCCCcEEEEEE
Confidence 111111111 111111100 012346679999999643 2333343333 22222344444
Q ss_pred EcCcccccc-cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCC-cchHHHHHHHh
Q 041248 296 TTRFVDVCG-SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGG-LPLALITIGRA 365 (813)
Q Consensus 296 TtR~~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~ 365 (813)
||....+.. .......+++.+++.++....+.+.+......-+ .+....|++.++| .+.++..+-.+
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 443233322 1234467899999999999998887754332222 3567888888865 56777666553
No 84
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.6e-05 Score=88.56 Aligned_cols=182 Identities=19% Similarity=0.177 Sum_probs=106.8
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEe
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPT------------------SFDCVIWAVV 218 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 218 (813)
..++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++....... .|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4679999999999999877544 45789999999999999999886521000 1111222221
Q ss_pred cCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH-HhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-
Q 041248 219 SKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR-SLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV- 294 (813)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il- 294 (813)
.....++ ...+.+..+.. -..+++-++|+|++... ..+..+...+ -.....+.+|
T Consensus 96 as~~gvd--------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~L-Eepp~~v~fIL 154 (546)
T PRK14957 96 ASRTGVE--------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTL-EEPPEYVKFIL 154 (546)
T ss_pred ccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHH-hcCCCCceEEE
Confidence 1111111 11122222221 12456779999999643 2344444344 2223345455
Q ss_pred EEcCccccccc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch-HHHHHH
Q 041248 295 FTTRFVDVCGS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL-ALITIG 363 (813)
Q Consensus 295 vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 363 (813)
+||....+... ......+++.+++.++....+.+.+.......+ +.....|++.++|.+- |+..+-
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 55554444322 234578999999999998888876543332222 3567789999999664 444443
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.23 E-value=5.5e-05 Score=87.61 Aligned_cols=167 Identities=21% Similarity=0.274 Sum_probs=97.9
Q ss_pred CcccchhHHHH---HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHH
Q 041248 158 PTIVGLQSQLE---QVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 158 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
.+|+|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|.. ++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~---lna~~-~~i~--------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFSS---LNAVL-AGVK--------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCccee---ehhhh-hhhH---------
Confidence 45799888774 46666766777788999999999999999999876 333311 11100 0000
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHh--cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEE--EcCccc--cc-cc
Q 041248 235 IGLVDDSWKSKSVEEKALDIFRSL--REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVF--TTRFVD--VC-GS 305 (813)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilv--TtR~~~--v~-~~ 305 (813)
+..+.+......+ .+++.++++||++.. ...+.+...+ ..+..++| ||.+.. +. ..
T Consensus 92 -----------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l----E~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 92 -----------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV----ENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred -----------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh----cCceEEEEEecCCChHhhhhhHh
Confidence 1111112222222 246779999999643 3333333222 23555555 344332 11 11
Q ss_pred CCCCcceEcCCCCHHHHHHHHHHhhCC-------CccCCChhHHHHHHHHHHHhCCcchH
Q 041248 306 MEADKKFQVACLSEEDAWELFRKKVGE-------ETLESDHDIVELAQTVAKECGGLPLA 358 (813)
Q Consensus 306 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~-------~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (813)
......+.+++++.++...++.+.+.. ....- -++....|++.++|..-.
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDARS 213 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCHHH
Confidence 122457999999999999999887641 11111 135678888999886543
No 86
>PRK05642 DNA replication initiation factor; Validated
Probab=98.21 E-value=1.5e-05 Score=80.16 Aligned_cols=149 Identities=16% Similarity=0.228 Sum_probs=87.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
...+.|+|..|+|||.|++.+++... ..-..++|++... +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999988762 1123456665432 1110 01222233
Q ss_pred cCCcEEEEEecccCc---ccccc-cccCCCCCCCCCcEEEEEcCcccc---------cccCCCCcceEcCCCCHHHHHHH
Q 041248 259 REKRFVLLLDDIWER---VDLTK-MGIPLSGPKNTTSKVVFTTRFVDV---------CGSMEADKKFQVACLSEEDAWEL 325 (813)
Q Consensus 259 ~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~s~ilvTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~L 325 (813)
.+-. ++|+||+... ..|+. +...+......|..||+|++...- .+.+.....++++++++++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3222 6788999532 23332 222220112346678888874332 12223346789999999999999
Q ss_pred HHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 326 FRKKVGEETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
+.+++......-+ +++..-|++.+.|..-.+.
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 9866543322222 3667777777777655443
No 87
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=8.6e-08 Score=93.71 Aligned_cols=162 Identities=17% Similarity=0.087 Sum_probs=98.6
Q ss_pred CCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHH
Q 041248 615 NLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQ 694 (813)
Q Consensus 615 ~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 694 (813)
.|++|||++...-..--.+++..|.+|+.|.+.++.. +......+..-.+|+.|+++.++...-.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L---------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL---------------DDPIVNTIAKNSNLVRLNLSMCSGFTEN 250 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc---------------CcHHHHHHhccccceeeccccccccchh
Confidence 4666666655211111123356666777776665433 2334456677778888888765542222
Q ss_pred hhhcchhhhhcceeeeecccCCccccccccccc-ccccceeeecccCc-cceeeecccccCCCCCCcccccCcceEeecc
Q 041248 695 FFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSD-LKHLNELCIRSAVE-LEELKVDYTEIAPKRSEPFVFRSLHRVTMER 772 (813)
Q Consensus 695 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~-l~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 772 (813)
.+.-....+..|..|+|+||...+...--...+ -++|+.|+|+||.. +..-.+.... ..+|+|..|+|++
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~--------~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV--------RRCPNLVHLDLSD 322 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH--------HhCCceeeecccc
Confidence 222222334589999999986544321101111 26899999999853 2211111111 3789999999999
Q ss_pred CcCCCc--ccchhcCCCCceEeeecCchh
Q 041248 773 CHKLKD--LTFLVCAPSLKSLSLYGCNAM 799 (813)
Q Consensus 773 c~~l~~--l~~l~~l~~L~~L~l~~c~~l 799 (813)
|..++. +..+.+++.|++|.++.|..+
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCC
Confidence 998877 335678999999999999875
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3.2e-05 Score=83.28 Aligned_cols=186 Identities=11% Similarity=0.033 Sum_probs=102.1
Q ss_pred CcccchhHHHHHHHHHHhcCC----------ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEES----------VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKI 227 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (813)
..++|-+..++.|.+.+..+. ...+.++|+.|+|||++|+.++....-.... + .....-..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~----~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----E----PGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----C----CCCCCCHH
Confidence 457899999999999987643 4568899999999999999998765110000 0 00011111
Q ss_pred HHHHHHHcCCC----CCccCCCCHHHHHHHHHHHh-----cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEE
Q 041248 228 QEDIGKKIGLV----DDSWKSKSVEEKALDIFRSL-----REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFT 296 (813)
Q Consensus 228 ~~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvT 296 (813)
.+.+....... .+.......++ ++.+.+.. .+++-++|+|+++.. .....+...+ -....+..+|++
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L-Eep~~~~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV-EEPPPRTVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh-hcCCCCCeEEEE
Confidence 11111100000 00000111122 12222222 345568888999753 2223333333 222334555555
Q ss_pred cCc-cccccc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 297 TRF-VDVCGS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 297 tR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
|.+ ..+... .+....+.+.+++.++..+.+.+..+. + .+.+..++..++|.|.....+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 544 344322 234568999999999999988754321 1 245788999999999765443
No 89
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=3.2e-05 Score=85.68 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=107.6
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEecCccCHHHHHHHHHHHc
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDC-VIWAVVSKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 235 (813)
.+++|-+..+..+...+..+. ...+.++|+.|+||||+|+.+++..... ..... --+. ....-.....+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~-~~~~~~~~~~----~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS-ALITENTTIK----TCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-cccccCcCcC----CCCCChHHHHHhcCC
Confidence 457999999998888777654 3578899999999999999998876211 00000 0000 000001111111100
Q ss_pred CCCCCc---cCCCCHHHHHHHHHH----HhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-EEcCccccccc
Q 041248 236 GLVDDS---WKSKSVEEKALDIFR----SLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV-FTTRFVDVCGS 305 (813)
Q Consensus 236 ~~~~~~---~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il-vTtR~~~v~~~ 305 (813)
...... ......++....+.. -+.+++-++|+|+++.. ..+..+...+ ......+.+| +||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~L-Eepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTL-EEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHH-hhcCCCEEEEEEeCChHHhhHH
Confidence 000000 001112222111111 12456779999999753 3455554444 2333455555 45555444332
Q ss_pred C-CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 306 M-EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 306 ~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
. .....+++.+++.++....+.+.+......-+ .+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 34467899999999999999988865432222 356778999999977544
No 90
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=1.8e-05 Score=89.62 Aligned_cols=193 Identities=16% Similarity=0.114 Sum_probs=108.4
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|-+..++.|...+..+.. ..+.++|..|+||||+|+.+++..... ..+ ...++..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~-------~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGI-------TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCC-------CCCCCCCCHHHHHHHcCCC
Confidence 4689999999999999887654 346899999999999999998876211 000 0011111122223321100
Q ss_pred CCC---CccCCCCHHH---HHHHHHH-HhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-EEcCcccccc-c
Q 041248 237 LVD---DSWKSKSVEE---KALDIFR-SLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV-FTTRFVDVCG-S 305 (813)
Q Consensus 237 ~~~---~~~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il-vTtR~~~v~~-~ 305 (813)
... +.......++ ++..+.. -..+++-++|+|++... .....+...+ -......++| +||....+.. .
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtL-EEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL-EEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHH-HcCCCCeEEEEecCCccccchHH
Confidence 000 0000011122 2222111 13467779999999743 3334443333 2222344454 4555444432 2
Q ss_pred CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 306 MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 306 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
......|++++++.++..+.+.+.........+ .+....|++.++|.+--+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 234578999999999999999887643321111 356788999999988644433
No 91
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=2.8e-06 Score=88.12 Aligned_cols=293 Identities=18% Similarity=0.170 Sum_probs=179.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
..+.+.++|.|||||||++-++.+ .+ ..+-+.+.++....-.+...+.-.+...++.+.. +-+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHHH
Confidence 458899999999999999999988 31 2344456667666666777777777776776542 223344566777
Q ss_pred hcCCcEEEEEecccCcccc-cccccCCCCCCCCCcEEEEEcCcccccccCCCCcceEcCCCCHH-HHHHHHHHhhCCCc-
Q 041248 258 LREKRFVLLLDDIWERVDL-TKMGIPLSGPKNTTSKVVFTTRFVDVCGSMEADKKFQVACLSEE-DAWELFRKKVGEET- 334 (813)
Q Consensus 258 l~~k~~LlVlDdv~~~~~~-~~~~~~l~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~- 334 (813)
..++|.++|+||-.+..+- ......+ ..+...-.|+.|+|..... .......+++|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~al-l~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVAL-LGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHH-HccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcc
Confidence 8889999999998553221 1111122 2344456788888864432 23456677777754 78888877664221
Q ss_pred -cCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCHHHHHH----HHHHHhchhhhccCchHHHHhHHHHhhcCCCh
Q 041248 335 -LESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKTAEEWIH----AIEVLRTSASEFAGLGEKVYRLLKFSYDSLQN 409 (813)
Q Consensus 335 -~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~----~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 409 (813)
..-...-.....+|.++.+|.|++|...++..+.- ...+-.. -...+........--+......+.+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 11112224678899999999999999998887763 2222221 11122222111111134677889999999998
Q ss_pred hhHHHHHhhhccCCCCccccHHHHHHHHHHcCCcccccccchHhhHHHHHHHHHHhccccee---cCCcEEEeHHHHHHH
Q 041248 410 ETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEESDRFSAENQGYYIVGTLVHACLLEEV---EDDKVKMHDVVRDMA 486 (813)
Q Consensus 410 ~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a 486 (813)
..+.-|.-++.|...|.-. ...|.+.|-.. ..+.-.....+..+++.+++.-. ....|+.-+-+|.++
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADV----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCcc----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7888888899888776544 33454444221 11223333446677777777543 233455555566666
Q ss_pred HHHHhh
Q 041248 487 LWIACE 492 (813)
Q Consensus 487 ~~~~~~ 492 (813)
..+-.+
T Consensus 311 laeL~r 316 (414)
T COG3903 311 LAELHR 316 (414)
T ss_pred HHHHHh
Confidence 554433
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.17 E-value=1.2e-05 Score=80.90 Aligned_cols=169 Identities=12% Similarity=0.079 Sum_probs=92.8
Q ss_pred cchhHHH-HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCC
Q 041248 161 VGLQSQL-EQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLV 238 (813)
Q Consensus 161 vGr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 238 (813)
.|..... ..+.++... .....+.|+|..|+|||+||+.+++... .... ...+++..... ..+
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~~------- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LAF------- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HHH-------
Confidence 3554443 344444332 3456889999999999999999998752 1122 33444432211 000
Q ss_pred CCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc--ccccccCCCCCCCCCc-EEEEEcCcccccc--------cCC
Q 041248 239 DDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD--LTKMGIPLSGPKNTTS-KVVFTTRFVDVCG--------SME 307 (813)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~s-~ilvTtR~~~v~~--------~~~ 307 (813)
... ...-++|+||+..... ...+...+......+. .+|+|++...... .+.
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 011 1234788999964321 1122222201112233 4666766433211 222
Q ss_pred CCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhh
Q 041248 308 ADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAM 366 (813)
Q Consensus 308 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 366 (813)
....++++++++++-..++.+.+......-+ ++..+.+++.+.|.+..+..+...+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3468899999998877777765433222222 3577788888888888876655443
No 93
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=4.6e-06 Score=96.46 Aligned_cols=104 Identities=22% Similarity=0.347 Sum_probs=73.2
Q ss_pred ceeEEEeeeccccc-cccchhhcCCCcccEEEeccCCccccc-ccCccccCCCCCCEEeecCCCCc-ccchhhcCCCCCc
Q 041248 541 HLLTLFLDFNYKLE-MITDGFFQCMPSLKVLKMSNCGHVKVL-KLPFGMSKLGSLQLLDISHAGIR-ELPEELKLLVNLK 617 (813)
Q Consensus 541 ~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~-~lp~~i~~L~~L~~L~l~~~~i~-~lp~~~~~l~~L~ 617 (813)
.++.|+++ ++.+. .+|.. +..+++|+.|+|++| .+. .+|..++.+.+|++|+|++|.+. .+|..+++|++|+
T Consensus 419 ~v~~L~L~-~n~L~g~ip~~-i~~L~~L~~L~Ls~N---~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLD-NQGLRGFIPND-ISKLRHLQSINLSGN---SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECC-CCCccccCCHH-HhCCCCCCEEECCCC---cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 36677777 33443 44544 777888888888888 564 67777888888888888888776 6777788888888
Q ss_pred EEeccCcccccccchhhhcC-CCCCceeeccccc
Q 041248 618 CLNLRWTRMLNKIPRLLISN-SSWLRVLRMFAIG 650 (813)
Q Consensus 618 ~L~l~~~~~l~~lp~~~i~~-L~~L~~L~l~~~~ 650 (813)
+|+|++|.....+|.. ++. +.++..+++.+|.
T Consensus 494 ~L~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCCcccccCChH-HhhccccCceEEecCCc
Confidence 8888888655577776 544 3456666666553
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.15 E-value=7.3e-06 Score=88.66 Aligned_cols=171 Identities=22% Similarity=0.259 Sum_probs=99.4
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
.++.|++..++++.+.+.. ...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 4689999999999887642 124568999999999999999999976 2333 22211
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCcc----------------cccccccCCC-CC
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWERV----------------DLTKMGIPLS-GP 286 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~l~-~~ 286 (813)
..+.... .+ ........+.+.. ...+.+|++|+++... .+..+...+. ..
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 0111222222222 3467899999986421 0111111110 01
Q ss_pred CCCCcEEEEEcCcccc-----cccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 287 KNTTSKVVFTTRFVDV-----CGSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 287 ~~~~s~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
...+.+||.||..... .........+.++..+.++..++|..++.......+-+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 2346678888875432 22112345789999999999999998875543222222 456777787764
No 95
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=4.6e-05 Score=80.95 Aligned_cols=197 Identities=12% Similarity=0.083 Sum_probs=111.5
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCC-CCCEEEEEEecCccCHHHHHHHHHHHc
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPT-SFDCVIWAVVSKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l 235 (813)
..++|.++..+.+...+..+. ...+.|+|+.|+||||+|..+.+....... .+... ............+.+...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 568999999999999998765 346899999999999999999887721100 01111 0011111122333333221
Q ss_pred C-------CCCCcc-----CCCCHHHHHHHHHHHh-----cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEE
Q 041248 236 G-------LVDDSW-----KSKSVEEKALDIFRSL-----REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFT 296 (813)
Q Consensus 236 ~-------~~~~~~-----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvT 296 (813)
. ...+.. .....++ +..+.+++ .+++-++|+|+++.. .....+...+..+.....-|++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0 000000 0112233 23444443 356779999999753 22333333331222233345555
Q ss_pred cCcccccc-cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHH
Q 041248 297 TRFVDVCG-SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIG 363 (813)
Q Consensus 297 tR~~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (813)
++...+.. ..+....+++.+++.++..+++.+...... . ..+.+..|++.++|.|.....+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~---~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--S---DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55443322 123346899999999999999988532211 1 13457789999999998665443
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=2.8e-05 Score=85.43 Aligned_cols=179 Identities=17% Similarity=0.166 Sum_probs=105.9
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEe
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESP------------------TSFDCVIWAVV 218 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 218 (813)
.+++|.+..++.+.+.+..+... .+.++|+.|+||||+|+.++....-.. ..+.-++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 46899999999888888776654 788999999999999999987531000 01111223332
Q ss_pred cCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEE
Q 041248 219 SKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFT 296 (813)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvT 296 (813)
+....++++ +++++.... .-..+++-++|+|++... .....+...+ -.....+++|++
T Consensus 93 as~~~vddI-R~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~L-EePp~~v~fIla 152 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTL-EEPAPHVKFILA 152 (491)
T ss_pred ccCCCHHHH-HHHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHH-hCCCCCeEEEEE
Confidence 222222221 112111110 001356668999999643 2334443333 222345556554
Q ss_pred c-Ccccccc-cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 297 T-RFVDVCG-SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 297 t-R~~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
| ....+.. .......+++.+++.++..+.+.+.+......-+ ++.+..|++.++|.+..+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 4 4344422 2234567899999999999999988765442222 356788999999877543
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.6e-05 Score=87.08 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=106.3
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|++..++.+.+++..+. ...+.++|+.|+||||+|+.+++... +.. |... ..+......+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~--C~~-----~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN--CLN-----PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CCC-----CCCC-CCCcccHHHHHHHcCCC
Confidence 468999999999999987654 45788999999999999999988762 111 1110 01111122222221110
Q ss_pred CCCCccC---CCCHHHHHHHHHHH-----hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEE-EcCcccccc-
Q 041248 237 LVDDSWK---SKSVEEKALDIFRS-----LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVF-TTRFVDVCG- 304 (813)
Q Consensus 237 ~~~~~~~---~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilv-TtR~~~v~~- 304 (813)
......+ ....++. +.+... ..+++-++|+|+++.. ..+..+...+ -.....+.+|+ |+....+..
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtL-EEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTL-EEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHH-HhCCCcEEEEEECCChHhhhHH
Confidence 0000000 0111111 112111 1234457999999642 3334443333 22223444544 544433322
Q ss_pred cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch-HHHHHHH
Q 041248 305 SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL-ALITIGR 364 (813)
Q Consensus 305 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 364 (813)
.......+++.++++++....+.+.+......-+ .+.+..+++.++|.+. |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2234568999999999999998887644331122 3567889999999664 4444443
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.14 E-value=5.5e-05 Score=82.05 Aligned_cols=181 Identities=13% Similarity=0.169 Sum_probs=105.5
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccC-C------------------CCCCEEEEEE
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLES-P------------------TSFDCVIWAV 217 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~-~------------------~~f~~~~wv~ 217 (813)
..++|.+..++.+.+++..+.. ..+.++|++|+||||+|+.+....... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 4679999999999999877653 467899999999999999988775110 0 02222 2222
Q ss_pred ecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEE
Q 041248 218 VSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVF 295 (813)
Q Consensus 218 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilv 295 (813)
.+...... ..+++...+... -..+++-++|+|++... .....+...+ ......+.+|+
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~l-e~~~~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTL-EEPPEHVVFIL 152 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHH-hCCccceeEEE
Confidence 21111111 111222211100 01245568899998643 2233333333 22234566666
Q ss_pred EcCccc-ccc-cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 296 TTRFVD-VCG-SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 296 TtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
+|.+.. +.. .......+++.++++++..+++...+......-+ .+.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHH
Confidence 664433 221 1123457889999999999998887644332222 367888999999988665443
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3.9e-05 Score=86.79 Aligned_cols=195 Identities=15% Similarity=0.170 Sum_probs=107.7
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCC-CCCEEEEEEecCccCHHHHHHHHHHHc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPT-SFDCVIWAVVSKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l 235 (813)
.+++|-+..++.|.+++..+.. ..+.++|..|+||||+|+.+.+....... .....- ...+..-...+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHcCC
Confidence 4689999989999999887654 56689999999999999999776521000 000000 01111222222221100
Q ss_pred CCCCCcc---CCCCHHHHHHHHHHH-----hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEE-EcCccccc-
Q 041248 236 GLVDDSW---KSKSVEEKALDIFRS-----LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVF-TTRFVDVC- 303 (813)
Q Consensus 236 ~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilv-TtR~~~v~- 303 (813)
....-.. .....++. ..+.+. ..++.-++|+|+++.. ..+..+...+ .......++|+ ||....+.
T Consensus 92 h~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtL-EEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 92 FVDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTL-EEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhc-ccCCCCeEEEEEECCchhhhH
Confidence 0000000 01112221 112121 1345568899999753 3344444333 22233455554 44433332
Q ss_pred ccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 304 GSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 304 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
........+++++++.++..+.+.+.+......-+ .+....|++.++|.+.-+..
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22234578999999999999999887754432222 35678899999997755433
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.13 E-value=6.5e-05 Score=73.12 Aligned_cols=160 Identities=17% Similarity=0.158 Sum_probs=90.7
Q ss_pred HHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEec-CccCHHHH
Q 041248 169 QVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP-------------------TSFDCVIWAVVS-KDLRLEKI 227 (813)
Q Consensus 169 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~-~~~~~~~~ 227 (813)
.+.+.+..++. ..+.++|+.|+||||+|+.+........ .+.|.. ++... .....+ .
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~-~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVD-Q 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHH-H
Confidence 45555655554 6789999999999999999988762110 111221 11111 111111 1
Q ss_pred HHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCcc-cccc
Q 041248 228 QEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFV-DVCG 304 (813)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~~ 304 (813)
.+++.+.+... -..+.+-++|+||+... .....+...+ ......+.+|++|++. .+..
T Consensus 81 i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~l-e~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 81 VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTL-EEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHh-cCCCCCeEEEEEECChHhChH
Confidence 11112211100 01245668999998643 2344444444 2233456666666543 2221
Q ss_pred c-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchH
Q 041248 305 S-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLA 358 (813)
Q Consensus 305 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (813)
. ......+++.+++.++..+.+.+. + . + .+.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g-i----~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G-I----S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C-C----C---HHHHHHHHHHcCCCccc
Confidence 1 123468999999999999999887 2 1 1 35688999999998853
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.00013 Score=81.63 Aligned_cols=180 Identities=15% Similarity=0.157 Sum_probs=104.7
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEe
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESP------------------TSFDCVIWAVV 218 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 218 (813)
.++||-+..++.|.+++..+... .+.++|+.|+||||+|+.+++...... +.|.-++.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 46899999999999999876544 578999999999999999988762100 01111222222
Q ss_pred cCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEE-
Q 041248 219 SKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVF- 295 (813)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilv- 295 (813)
+....++++ +++++.+.. .-..++.-++|+|+++.. .....+...+ ......+++|+
T Consensus 96 as~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~L-Eepp~~~~fIla 155 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTL-EEPPSHVKFILA 155 (509)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHH-hccCCCeEEEEE
Confidence 212222221 122221111 012356678999999743 3333333333 22233465655
Q ss_pred EcCccccccc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 296 TTRFVDVCGS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 296 TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
||....+... .+....+++++++.++....+.+.+......-+ .+....|++.++|.+.-+.
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDAL 218 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHH
Confidence 4443333221 233467889999999988887776644332222 2457789999999886443
No 102
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00012 Score=82.33 Aligned_cols=196 Identities=14% Similarity=0.155 Sum_probs=109.3
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
.+++|-+..++.|.+.+..+. ...+.++|+.|+||||+|+.+++.... ....+ ...+..-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCC-------CCCCcccHHHHHHhcCCC
Confidence 467999988888888887765 467888999999999999999887621 01000 001111112222211110
Q ss_pred CCCCcc---CCCCHHHHHHHHHHH-----hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEc-Cccccccc
Q 041248 237 LVDDSW---KSKSVEEKALDIFRS-----LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTT-RFVDVCGS 305 (813)
Q Consensus 237 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTt-R~~~v~~~ 305 (813)
...... .....++ ++.+.+. ..+++-++|+|++... .....+...+ ........+|++| ....+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~L-EEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTL-EEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHh-hccCCCEEEEEecCChhhhhHH
Confidence 000000 0011111 1122221 2356679999999643 3334443333 2222345555544 43433321
Q ss_pred -CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc-hHHHHHHHhh
Q 041248 306 -MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP-LALITIGRAM 366 (813)
Q Consensus 306 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l 366 (813)
......|++++++.++....+.+.+......-+ .+.++.|++.++|.+ .|+..+...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 223457899999999999999886654332122 356788999999965 6777665544
No 103
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.10 E-value=2.7e-05 Score=77.30 Aligned_cols=187 Identities=17% Similarity=0.227 Sum_probs=113.0
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEE-EEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVI-WAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|-+..++.|.+.+.....+....+|++|.|||+.|..++... --.+.|.+.+ -.++|......-+-..
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~K------ 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREK------ 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhh------
Confidence 4689999999999999988778899999999999999999988876 2234455432 2344433222100000
Q ss_pred CCCCccCCCCHHHHHHHHHHHh--cCCc-EEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCccc-cccc-CCCC
Q 041248 237 LVDDSWKSKSVEEKALDIFRSL--REKR-FVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVD-VCGS-MEAD 309 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~-v~~~-~~~~ 309 (813)
..+...+.....+.. ..++ -++|||+++.. ..|..+...+ ......++.++.+..-+ +... ....
T Consensus 109 -------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~m-E~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 109 -------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTM-EDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred -------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHH-hccccceEEEEEcCChhhCChHHHhhH
Confidence 001111100000000 0123 47789999754 5577766555 34445566554443322 2211 1234
Q ss_pred cceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc-chHHHHH
Q 041248 310 KKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL-PLALITI 362 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 362 (813)
..|..++|.+++...-+...+..+...-+ .+..+.|++.++|- --|+.++
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 57889999999999999988876654333 35678999999884 4444444
No 104
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=3.4e-05 Score=86.97 Aligned_cols=188 Identities=13% Similarity=0.144 Sum_probs=104.4
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHH--
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKK-- 234 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-- 234 (813)
..++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+.... ..... + ..+........+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC-~~~~~---~----~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC-ENAQH---G----EPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cCCCC---C----CCCcccHHHHHHhccCc
Confidence 4689999999999999987654 46899999999999999999886511 10000 0 000000111111100
Q ss_pred ---cCCCCCccCCCCHHHHHHHHHHH-----hcCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEcCcc-ccc
Q 041248 235 ---IGLVDDSWKSKSVEEKALDIFRS-----LREKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRFV-DVC 303 (813)
Q Consensus 235 ---l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~ 303 (813)
+.+.. ......++. +.+... ..+++-++|+|++.... ....+...+ ......+++|++|.+. .+.
T Consensus 88 ~DvlEida--As~~gVd~I-Relle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtL-EEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 88 VDLLEIDA--ASNTGIDNI-REVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTL-EEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred cceEEEec--cccCCHHHH-HHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHH-HhCCCCcEEEEEeCCccccc
Confidence 00000 001111111 111111 23566789999996432 222333233 2222345666655433 332
Q ss_pred cc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 304 GS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 304 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
.. .+....|.+.+++.++....+.+.+......-+ .+....|++.++|.+.-+.
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHH
Confidence 11 133456888999999999999887765432222 3567899999999885443
No 105
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.10 E-value=9e-06 Score=85.07 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=61.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc--CHHHHHHHHHHHcCCCCCccCCCCHHHH-----
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL--RLEKIQEDIGKKIGLVDDSWKSKSVEEK----- 250 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~----- 250 (813)
.-....|+|++|+||||||+++++.. . ..+|+.++||.+.+.. .+.++++.+...+-.. .++.......
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s--t~d~~~~~~~~~a~~ 243 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS--TFDEPAERHVQVAEM 243 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE--CCCCCHHHHHHHHHH
Confidence 44578899999999999999999987 3 3489999999998887 7778888886322111 1122211111
Q ss_pred -HHHHHHH-hcCCcEEEEEeccc
Q 041248 251 -ALDIFRS-LREKRFVLLLDDIW 271 (813)
Q Consensus 251 -~~~l~~~-l~~k~~LlVlDdv~ 271 (813)
...-... -.+++++|++|++.
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChH
Confidence 1111111 36899999999994
No 106
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=1.4e-07 Score=102.77 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=100.0
Q ss_pred CccCccceeEEecccccccccccCCCC-CceeEEEeeecc----------ccccccchhhcCCCcccEEEeccCCccccc
Q 041248 513 DVEGWENVRRLSLMQNQIEILSEVPTC-PHLLTLFLDFNY----------KLEMITDGFFQCMPSLKVLKMSNCGHVKVL 581 (813)
Q Consensus 513 ~~~~~~~~~~l~l~~~~~~~l~~~~~~-~~L~~L~l~~~~----------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 581 (813)
.+..+.++|+|.+.+.++....++..+ ..|.+|..+ +. ...++..++ ....|...+.++| .+.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN---~L~ 177 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP--VWNKLATASFSYN---RLV 177 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch--hhhhHhhhhcchh---hHH
Confidence 344567888888888776554332211 234444433 11 011111110 0134566666777 666
Q ss_pred ccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccc
Q 041248 582 KLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDS 661 (813)
Q Consensus 582 ~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 661 (813)
.+-.++.-++.|+.|||++|+++..- .+..|++|+||||+.| .+..+|.-....+ +|+.|.+.+|..+.
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~t-------- 246 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALTT-------- 246 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHHh--------
Confidence 66666777777888888887777664 6777777888888777 5677776212233 37777777655443
Q ss_pred cccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeeccc
Q 041248 662 VLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKL 714 (813)
Q Consensus 662 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 714 (813)
+..+.+|.+|+.|+++.|-+.....+..... +..|+.|+|.|+
T Consensus 247 ---------L~gie~LksL~~LDlsyNll~~hseL~pLws-Ls~L~~L~LeGN 289 (1096)
T KOG1859|consen 247 ---------LRGIENLKSLYGLDLSYNLLSEHSELEPLWS-LSSLIVLWLEGN 289 (1096)
T ss_pred ---------hhhHHhhhhhhccchhHhhhhcchhhhHHHH-HHHHHHHhhcCC
Confidence 3446666777777777666544333322222 236677777764
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=2.7e-05 Score=85.02 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=108.0
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE-ecCccCHHHHHHHHHHHc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAV-VSKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 235 (813)
..++|.+..++.|..++.++... .+.++|+.|+||||+|+.+++.... ........|.. +..+...-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c-~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC-CCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46899999999999988876554 4889999999999999999887621 11111111110 011111112222222111
Q ss_pred CCCCCcc---CCCCHHHHHHHHHHHh-----cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEE-EcCcccccc
Q 041248 236 GLVDDSW---KSKSVEEKALDIFRSL-----REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVF-TTRFVDVCG 304 (813)
Q Consensus 236 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilv-TtR~~~v~~ 304 (813)
....... .....++. ..+.+.+ .+++-++|+|++... ..+..+...+ ......+.+|+ |++...+..
T Consensus 95 ~~n~~~~~~~~~~~id~I-r~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~L-Eep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDI-RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTL-EEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHH-HHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHH-hcCCCCeEEEEEeCChHHhHH
Confidence 1100000 01112222 2222333 345668899999643 3455554444 33334555555 444333332
Q ss_pred c-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 305 S-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 305 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
. ......+++.++++++..+.+...+......-+ .+.++.|++.++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 1 122357899999999999888887643321111 367889999999977544
No 108
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=1.2e-05 Score=84.97 Aligned_cols=63 Identities=17% Similarity=0.319 Sum_probs=43.1
Q ss_pred cCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCC-CCcccchhhcCCCCCcEEeccCcccccccch
Q 041248 562 QCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHA-GIRELPEELKLLVNLKCLNLRWTRMLNKIPR 632 (813)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 632 (813)
..+.+++.|++++| .++.+| .+ ..+|+.|.+++| .++.+|..+ ..+|++|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c---~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDC---DIESLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCC---CCcccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 34577888888888 777777 22 245788888775 667777654 35778888887766666665
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.06 E-value=2.2e-05 Score=77.94 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=89.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
...+.|+|..|+|||.|.+++++...+ ...-..+++++ ..++...+...+... . ...+...+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~~~~-------~----~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADALRDG-------E----IEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHHHTT-------S----HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHHHcc-------c----chhhhhhh
Confidence 456899999999999999999998722 12222455664 345555555544311 1 13344444
Q ss_pred cCCcEEEEEecccCc---ccccc-cccCCCCCCCCCcEEEEEcCcccc---------cccCCCCcceEcCCCCHHHHHHH
Q 041248 259 REKRFVLLLDDIWER---VDLTK-MGIPLSGPKNTTSKVVFTTRFVDV---------CGSMEADKKFQVACLSEEDAWEL 325 (813)
Q Consensus 259 ~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~s~ilvTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~L 325 (813)
++ -=++++||+... ..|++ +...+......|.+||+|++...- .+.+...-.++++++++++...+
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 43 337889999643 22222 111110112346789999964422 22334556799999999999999
Q ss_pred HHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 326 FRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
+.+.+......-+ +++++-|++.+.+..-.+
T Consensus 175 l~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 175 LQKKAKERGIELP---EEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHTT--S----HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHH
Confidence 9998865442222 356667777766554444
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00011 Score=79.75 Aligned_cols=179 Identities=12% Similarity=0.143 Sum_probs=102.0
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCCCEE-EEEEecCccCHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLES-----PTSFDCV-IWAVVSKDLRLEKIQED 230 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~-----~~~f~~~-~wv~~~~~~~~~~~~~~ 230 (813)
..++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+.+..... ...|... +-+.......... ...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 4679999999999999987654 578899999999999999998875210 0112111 1111111111111 111
Q ss_pred HHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEc-Ccccccc-cC
Q 041248 231 IGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTT-RFVDVCG-SM 306 (813)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTt-R~~~v~~-~~ 306 (813)
+.+.+... -..+++-++++|++... ..+..+...+ ......+.+|++| ....+.. ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~l-e~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTL-EEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHH-hCCCCceEEEEEeCCcccCCHHHH
Confidence 22211100 01245568999998643 2244443323 2222344555444 4333322 12
Q ss_pred CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 307 EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 307 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
.....++++++++++....+.+.+......-+ .+.++.|++.++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 23457899999999999998887654432222 367888899999866533
No 111
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=8.7e-05 Score=87.11 Aligned_cols=189 Identities=11% Similarity=0.056 Sum_probs=104.9
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+..++.|...+..+.. ..+.++|+.|+||||+|+.+.+...-. ..... ..+..-...+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~-------~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTS-------TPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCC-------CCCcccHHHHHHHcCCC
Confidence 3689999999999999987655 457899999999999999998876211 11000 00001111111111100
Q ss_pred CCC-----CccCCCCHHHHHHHHHH-----HhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-EEcCccccc
Q 041248 237 LVD-----DSWKSKSVEEKALDIFR-----SLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV-FTTRFVDVC 303 (813)
Q Consensus 237 ~~~-----~~~~~~~~~~~~~~l~~-----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il-vTtR~~~v~ 303 (813)
... +.......++. +.+.+ -..+++-++|||+++.. .....+...+ -.....+.+| +||....+.
T Consensus 87 ~~~dv~eidaas~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~L-EEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIV-EEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCcEEEecccccCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHH-hCCCCCeEEEEEeCChhhhh
Confidence 000 00000111221 11211 13456668899999753 3334444344 2223345555 454444443
Q ss_pred c-cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 304 G-SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 304 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
. .......|++..++.++..+++.+.+.......+ .+....|++.++|.+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 2234578999999999999888887643332212 245678999999987443
No 112
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=7.3e-05 Score=84.13 Aligned_cols=182 Identities=16% Similarity=0.168 Sum_probs=103.8
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEe
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPT------------------SFDCVIWAVV 218 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 218 (813)
.+++|-+..++.+..++..+.. ..+.++|+.|+||||+|+.+.+...-... .|.-.+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 4679999999999999887654 45689999999999999999887621000 0111122211
Q ss_pred cCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEE-
Q 041248 219 SKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVF- 295 (813)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilv- 295 (813)
+....++. .++++..+.. .-..+++-++|+|++.... ....+...+ -.....+.+|+
T Consensus 96 ~~~~~vd~-ir~l~~~~~~------------------~p~~~~~kVvIIDEad~ls~~a~naLLK~L-Eepp~~~~fIL~ 155 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQY------------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTL-EEPPEHVKFILA 155 (527)
T ss_pred cccCCHHH-HHHHHHHHhh------------------CcccCCceEEEEcCcccCCHHHHHHHHHHH-hCCCCCEEEEEE
Confidence 11111111 1111111110 0123566799999997532 233333333 22223455554
Q ss_pred EcCccccccc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch-HHHHH
Q 041248 296 TTRFVDVCGS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL-ALITI 362 (813)
Q Consensus 296 TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 362 (813)
||....+... ......+++++++.++..+.+.+.+.......+ .+....|++.++|.+- |+..+
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 5443333321 223467899999999999888887643331111 3566889999999775 33433
No 113
>PLN03150 hypothetical protein; Provisional
Probab=98.00 E-value=1.4e-05 Score=92.54 Aligned_cols=84 Identities=25% Similarity=0.401 Sum_probs=72.0
Q ss_pred cccEEEeccCCccccc-ccCccccCCCCCCEEeecCCCCc-ccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCce
Q 041248 566 SLKVLKMSNCGHVKVL-KLPFGMSKLGSLQLLDISHAGIR-ELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRV 643 (813)
Q Consensus 566 ~L~~L~l~~~~~~~~~-~lp~~i~~L~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 643 (813)
.++.|+|++| .+. .+|..+++|.+|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|.. +++|++|++
T Consensus 419 ~v~~L~L~~n---~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQ---GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRI 494 (623)
T ss_pred EEEEEECCCC---CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCE
Confidence 4788999998 565 67888999999999999999887 78989999999999999999655578886 899999999
Q ss_pred eeccccccCC
Q 041248 644 LRMFAIGFEN 653 (813)
Q Consensus 644 L~l~~~~~~~ 653 (813)
|++++|.+.+
T Consensus 495 L~Ls~N~l~g 504 (623)
T PLN03150 495 LNLNGNSLSG 504 (623)
T ss_pred EECcCCcccc
Confidence 9999887764
No 114
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=9.5e-07 Score=97.50 Aligned_cols=126 Identities=29% Similarity=0.337 Sum_probs=77.6
Q ss_pred ceeEEecccccccc-cccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEe
Q 041248 519 NVRRLSLMQNQIEI-LSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLD 597 (813)
Q Consensus 519 ~~~~l~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~ 597 (813)
.+..+++..|.+.. ......+.+|..|++. .+.+..+... +..+++|++|++++| .|+.+. .+..+..|+.|+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~-~n~i~~i~~~-l~~~~~L~~L~ls~N---~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLY-DNKIEKIENL-LSSLVNLQVLDLSFN---KITKLE-GLSTLTLLKELN 146 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeecc-ccchhhcccc-hhhhhcchheecccc---cccccc-chhhccchhhhe
Confidence 44445566666665 2335666777777777 4455555443 456777777777777 666664 456666677777
Q ss_pred ecCCCCcccchhhcCCCCCcEEeccCcccccccch-hhhcCCCCCceeeccccccCC
Q 041248 598 ISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 598 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~ 653 (813)
+.+|.|..++ .+..+++|+.+++++| .+..++. . ...+.+|+.+.+.+|.+..
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 7777776663 4455777777777777 3454544 1 2566677777776655443
No 115
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=1.1e-05 Score=56.74 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=20.0
Q ss_pred CCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccc
Q 041248 592 SLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIP 631 (813)
Q Consensus 592 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp 631 (813)
+|++|++++|+|+.+|..+++|++|++|++++| .+..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 455555555555555555555555555555555 344443
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00012 Score=83.10 Aligned_cols=194 Identities=14% Similarity=0.138 Sum_probs=108.1
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC--EEEEEEecCccCHHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTSFD--CVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
..++|.+..++.|.+.+..++. ..+.++|+.|+||||+|+.+++..... .... ...+ ..+..-...+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~-~~~~~~~~~~----~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE-GPDGDGGPTI----DLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC-CccccCCCcc----ccCcccHHHHHHhcC
Confidence 4689999999999999987654 468899999999999999998876211 0000 0000 001111122222221
Q ss_pred cCCCCCcc---CCCCHHHHHHHHHHH-----hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEE-EcCccccc
Q 041248 235 IGLVDDSW---KSKSVEEKALDIFRS-----LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVF-TTRFVDVC 303 (813)
Q Consensus 235 l~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilv-TtR~~~v~ 303 (813)
.....-.. .....++ ++.+.+. ..+++-++|+|++... .....+...+ -.....+.+|+ ||....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtL-EePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTL-EEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHH-HhCCCCeEEEEEeCChhhhh
Confidence 11000000 0111222 1122222 2345568999999643 2333443333 22233455554 54444432
Q ss_pred cc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 304 GS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 304 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
.. ......+++.+++.++....+.+.+......-+ .+....|++.++|.+.-+..
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22 234567899999999999999887754432222 25678899999998865543
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00012 Score=82.63 Aligned_cols=197 Identities=13% Similarity=0.084 Sum_probs=107.8
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
.+++|.+..++.|..++..+... .+.++|+.|+||||+|+.+++..... ...+ + .++..-...+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~---~----~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPT---A----TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCC---C----CcccccHHHHHhhcccC
Confidence 46899999999999999876544 46899999999999999998876211 0000 0 01111111122211000
Q ss_pred CCCC-----ccCCCCHHH---HHHHHHHH-hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-EEcCcccccc
Q 041248 237 LVDD-----SWKSKSVEE---KALDIFRS-LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV-FTTRFVDVCG 304 (813)
Q Consensus 237 ~~~~-----~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il-vTtR~~~v~~ 304 (813)
...+ .......++ +...+... ..+++-++|+|++... .....+...+ ........+| +||....+..
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~L-EEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIV-EEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHH-hcCCCCeEEEEEeCChHhhHH
Confidence 0000 000011111 11111111 2355668899999642 3333443333 2222344444 5555444432
Q ss_pred -cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch-HHHHHHHhh
Q 041248 305 -SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL-ALITIGRAM 366 (813)
Q Consensus 305 -~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 366 (813)
..+....+++.+++.++..+.+.+.+......-+ .+....|++.++|.+- ++..+-.++
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2234578999999999999888886654332122 3567888999999774 445544433
No 118
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.00052 Score=72.38 Aligned_cols=173 Identities=16% Similarity=0.202 Sum_probs=107.2
Q ss_pred CCcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHH
Q 041248 157 EPTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIG 232 (813)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (813)
+..++||+.++..+.+++.. ...+.+-|.|.+|.|||.+...++.+....... -+++++++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 35689999999999999864 467889999999999999999999987221122 2456666655445566666666
Q ss_pred HHc--CCCCCccCCCCHHHHHHHHHHHhcC--CcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCccc-----
Q 041248 233 KKI--GLVDDSWKSKSVEEKALDIFRSLRE--KRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVD----- 301 (813)
Q Consensus 233 ~~l--~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~----- 301 (813)
..+ .... .....+....+..+..+ +.+|+|+|..+.- ..-..+...|.++.-+++++|+.---..
T Consensus 228 ~~~~q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 228 SSLLQDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHhcC----CchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 655 1111 12224555666666654 3688999998642 1111122222234445666654221111
Q ss_pred --c--cc--cCCCCcceEcCCCCHHHHHHHHHHhhCCCc
Q 041248 302 --V--CG--SMEADKKFQVACLSEEDAWELFRKKVGEET 334 (813)
Q Consensus 302 --v--~~--~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 334 (813)
+ .. ..-....+..+|.+.++-.+++..+.....
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 1 00 111235678899999999999999886543
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=5e-05 Score=83.74 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
...+.|+|..|+|||+|++.+++... ....-..+++++ ..++...+...++.. ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~-~~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIE-SNFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 35689999999999999999998652 112222344543 345666666655421 01223444444
Q ss_pred cCCcEEEEEecccCcc---cc-cccccCCCCCCCCCcEEEEEcCccc---------ccccCCCCcceEcCCCCHHHHHHH
Q 041248 259 REKRFVLLLDDIWERV---DL-TKMGIPLSGPKNTTSKVVFTTRFVD---------VCGSMEADKKFQVACLSEEDAWEL 325 (813)
Q Consensus 259 ~~k~~LlVlDdv~~~~---~~-~~~~~~l~~~~~~~s~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~L 325 (813)
+. .-+||+||+.... .+ +.+...+......+..||+|+.... +...+...-.+.+++++.++-.++
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 43 3478889995321 11 2222222011233457888876432 223334456788999999999999
Q ss_pred HHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHH
Q 041248 326 FRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIG 363 (813)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (813)
+.+++...... ..--+++..-|++.++|.|-.+..+.
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99988543211 01224788999999999998775544
No 120
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.93 E-value=4.5e-05 Score=80.42 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc--cCHHHHHHHHHHHcCCCCCccCCCCHH--HH---
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD--LRLEKIQEDIGKKIGLVDDSWKSKSVE--EK--- 250 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~--~~--- 250 (813)
.-..++|+|++|+|||||++.+++.. . ..+|+..+|+.+.+. .++.++++.+...+-... ++..... ..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast--~d~p~~~~~~va~~ 242 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPASRHVQVAEM 242 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEec--CCCChHHHHHHHHH
Confidence 45688999999999999999999987 2 347999999999866 789999999854332211 1111111 11
Q ss_pred -HHHHHHH-hcCCcEEEEEecccC
Q 041248 251 -ALDIFRS-LREKRFVLLLDDIWE 272 (813)
Q Consensus 251 -~~~l~~~-l~~k~~LlVlDdv~~ 272 (813)
....... -.|++++|++|++..
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhH
Confidence 1111122 358999999999953
No 121
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.93 E-value=8.3e-05 Score=80.81 Aligned_cols=171 Identities=20% Similarity=0.303 Sum_probs=98.0
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
+.+.|++.+++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 3678999999999887631 235678999999999999999999976 222 222221
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCcc------------c----ccccccCCCC-C
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWERV------------D----LTKMGIPLSG-P 286 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~-~ 286 (813)
..+. ... .... ......+.... ...+.+|++||++... . +..+...+.. .
T Consensus 199 ~~l~----~~~-------~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELV----QKF-------IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHh----Hhh-------ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 110 0111 12222233322 3467899999996421 0 1111111100 1
Q ss_pred CCCCcEEEEEcCcccccc-cC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 287 KNTTSKVVFTTRFVDVCG-SM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 287 ~~~~s~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
...+..||.||....... .+ .....++++..+.++-.++|..++.......+.+ ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 123566777776543211 11 2345789999999999999998876543222222 356677777653
No 122
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00017 Score=82.46 Aligned_cols=187 Identities=15% Similarity=0.135 Sum_probs=104.3
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+..++.+..++..++ ...+.++|+.|+||||+|+.++...........+ ..-...... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~----------~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL----------EPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC----------CchhHHHHh---hc
Confidence 467999999999999998765 4566899999999999999998765211000000 000000000 00
Q ss_pred CCCC-----ccCCCCHHHHHHHHHHHh-----cCCcEEEEEecccCc--ccccccccCCCCCCCCCcE-EEEEcCccccc
Q 041248 237 LVDD-----SWKSKSVEEKALDIFRSL-----REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSK-VVFTTRFVDVC 303 (813)
Q Consensus 237 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~-ilvTtR~~~v~ 303 (813)
...+ .......++ ++.+.+.+ .+++-++|+|++... ..+..+...+..+ ...+. |++|++...+.
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-P~~tifILaTte~~KLl 162 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-PKHVIFILATTEVHKIP 162 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-CCceEEEEEcCChhhhh
Confidence 0000 000011111 22222222 356679999998643 3344443333122 22344 45565554443
Q ss_pred c-cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch-HHHHH
Q 041248 304 G-SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL-ALITI 362 (813)
Q Consensus 304 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 362 (813)
. .......+++.+++.++....+...+.......+ .+.+..|++.++|.+. |+..+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 2234568999999999999888876543321122 2567889999999764 44443
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00019 Score=81.60 Aligned_cols=199 Identities=14% Similarity=0.135 Sum_probs=108.1
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE-ecCccCHHHHHHHHHHHc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAV-VSKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 235 (813)
..++|.+..++.|.+.+..+.. ..+.++|+.|+||||+|+.+++...- ....+...|.. +...+..-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c-~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC-CCcCCccccccccCCCCccCHHHHHHhccC
Confidence 4689999999999998877654 45889999999999999999887621 11111001111 011111112222222111
Q ss_pred CCCCCcc---CCCCHHHHHHHHHHH-----hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-EEcCcccccc
Q 041248 236 GLVDDSW---KSKSVEEKALDIFRS-----LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV-FTTRFVDVCG 304 (813)
Q Consensus 236 ~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il-vTtR~~~v~~ 304 (813)
....... .....++.. .+.+. ..+++-++|+|+++.. .....+...+ ......+.+| +|++...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~L-EePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTL-EEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHH-hCCCCCeEEEEEeCChhhhhH
Confidence 1100000 011122222 22222 2345668899998653 2344444444 2222344444 4544433332
Q ss_pred -cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch-HHHHH
Q 041248 305 -SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL-ALITI 362 (813)
Q Consensus 305 -~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 362 (813)
.......+++.+++.++....+.+.+......-+ .+.++.|++.++|..- |+..+
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 2234578999999999998888876643221112 3578899999999654 44433
No 124
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.2e-05 Score=56.59 Aligned_cols=40 Identities=30% Similarity=0.497 Sum_probs=34.1
Q ss_pred CcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccc
Q 041248 565 PSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELP 607 (813)
Q Consensus 565 ~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp 607 (813)
++|++|++++| .++.+|+.+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N---~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN---QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS---S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC---CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47899999999 89999988999999999999999988775
No 125
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.92 E-value=0.00012 Score=75.31 Aligned_cols=153 Identities=14% Similarity=0.161 Sum_probs=78.6
Q ss_pred cccchhHHHHHHHHHHh---------c------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccC
Q 041248 159 TIVGLQSQLEQVWRCLV---------E------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLR 223 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---------~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 223 (813)
.++|.+..+++|.+... . .....+.++|++|+||||+|+.+++..... ..-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 47888877766654321 0 134567899999999999999998765111 11111112332221
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc----------cccccccCCCCCCCCCcEE
Q 041248 224 LEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV----------DLTKMGIPLSGPKNTTSKV 293 (813)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~~~s~i 293 (813)
++... . ...... ....+.+... .-+|++|++.... ....+...+ ........+
T Consensus 84 --~l~~~---~--------~g~~~~-~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~-e~~~~~~~v 146 (261)
T TIGR02881 84 --DLVGE---Y--------IGHTAQ-KTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGM-EDNRNEFVL 146 (261)
T ss_pred --Hhhhh---h--------ccchHH-HHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHH-hccCCCEEE
Confidence 11110 0 011111 1122222222 2488999996421 122232222 222233355
Q ss_pred EEEcCcccc----------cccCCCCcceEcCCCCHHHHHHHHHHhhCCC
Q 041248 294 VFTTRFVDV----------CGSMEADKKFQVACLSEEDAWELFRKKVGEE 333 (813)
Q Consensus 294 lvTtR~~~v----------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 333 (813)
++++..... ... ....+++++++.++-.+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHHHc
Confidence 555543222 111 13468899999999999998877543
No 126
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00026 Score=80.96 Aligned_cols=178 Identities=12% Similarity=0.141 Sum_probs=105.4
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccC--------------------CCCCCEEEEE
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLES--------------------PTSFDCVIWA 216 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~--------------------~~~f~~~~wv 216 (813)
..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+....... ..+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 4689999999999999987655 457899999999999999888765200 112322 122
Q ss_pred EecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE
Q 041248 217 VVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV 294 (813)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il 294 (813)
..+....++++. ++++++... -..+++-++|+|++... ..+..+...+ ......+.+|
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~L-Eepp~~tifI 155 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTL-EEPPSYAIFI 155 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHH-hCCCCCeEEE
Confidence 221111111111 111111100 01245558899998643 3344444444 2222345554
Q ss_pred -EEcCccccccc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 295 -FTTRFVDVCGS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 295 -vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
+||+...+... ......+++.++++++....+.+.+.......+ .+.+..|++.++|..--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 45554444322 234567999999999999999887654432222 256789999999976543
No 127
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=4.1e-06 Score=82.25 Aligned_cols=208 Identities=13% Similarity=0.073 Sum_probs=115.7
Q ss_pred cCCCcccEEEeccCCcccccc---cCccccCCCCCCEEeecCCC----CcccchhhcCCCCCcEEeccCcccccccchhh
Q 041248 562 QCMPSLKVLKMSNCGHVKVLK---LPFGMSKLGSLQLLDISHAG----IRELPEELKLLVNLKCLNLRWTRMLNKIPRLL 634 (813)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~---lp~~i~~L~~L~~L~l~~~~----i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~ 634 (813)
.....++.|||.+| .|+. +-..+.+|++|++|+|++|. |.++| ..+.+|++|-|.++..-..--...
T Consensus 68 ~~~~~v~elDL~~N---~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN---LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HHhhhhhhhhcccc---hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhh
Confidence 44567788888887 5543 33345567888888888874 34455 245678888887774322222223
Q ss_pred hcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcC-CCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecc
Q 041248 635 ISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGL-RYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNK 713 (813)
Q Consensus 635 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 713 (813)
...+++++.|+++.|++..+.. +..- .... +.+++|+...|....+..........+++..+.+..
T Consensus 142 l~~lP~vtelHmS~N~~rq~n~----------Dd~c---~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLRQLNL----------DDNC---IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhcchhhhhhhhccchhhhhcc----------cccc---ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 6677888888888776554321 0000 0011 133444444333333333333334455777777766
Q ss_pred cCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCccc-------chhcCC
Q 041248 714 LGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT-------FLVCAP 786 (813)
Q Consensus 714 ~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-------~l~~l~ 786 (813)
|+--+.-.-.+..+++.+..|+++. +++.+ |.+ ......|++|+.|.+.+.|.+..+. .++.++
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~-~~ids----was----vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGA-NNIDS----WAS----VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcc-ccccc----HHH----HHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 5322222222445566666777765 33332 222 1222478999999999887665553 246688
Q ss_pred CCceEeeecCc
Q 041248 787 SLKSLSLYGCN 797 (813)
Q Consensus 787 ~L~~L~l~~c~ 797 (813)
+++.|+=+...
T Consensus 280 ~v~vLNGskIs 290 (418)
T KOG2982|consen 280 KVQVLNGSKIS 290 (418)
T ss_pred ceEEecCcccc
Confidence 88888765433
No 128
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.0018 Score=64.04 Aligned_cols=172 Identities=20% Similarity=0.203 Sum_probs=97.0
Q ss_pred CcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIG 232 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (813)
.+|+|.++.++++.=++.. +...-|.++|++|.||||||.-+++.. ...+... -+....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~t----sGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKIT----SGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEec----ccccccChhhHHHHH
Confidence 4689999888887666642 456789999999999999999999987 2222211 111111111111222
Q ss_pred HHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc---------ccccccccCCCCCCCC-----------CcE
Q 041248 233 KKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER---------VDLTKMGIPLSGPKNT-----------TSK 292 (813)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~~~l~~~~~~-----------~s~ 292 (813)
..+ +... ++.+|.+... ...+++..-..-..++ -+-
T Consensus 99 t~L-----------------------e~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 99 TNL-----------------------EEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred hcC-----------------------CcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 222 1111 3334554321 0011110000001112 233
Q ss_pred EEEEcCcccccccCC--CCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHH
Q 041248 293 VVFTTRFVDVCGSME--ADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIG 363 (813)
Q Consensus 293 ilvTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (813)
|=-|||.-.+...+. -....+++..+.+|-.++..+.+..-....+ ++.+.+|++...|-|--..-+-
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHH
Confidence 445899655543332 2346789999999999999998854332222 3678999999999996554433
No 129
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.86 E-value=2.1e-06 Score=94.79 Aligned_cols=130 Identities=23% Similarity=0.338 Sum_probs=96.3
Q ss_pred ccCccceeEEeccccccccccc-CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCC
Q 041248 514 VEGWENVRRLSLMQNQIEILSE-VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGS 592 (813)
Q Consensus 514 ~~~~~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~ 592 (813)
.....++..+++..|.+..+.. +..+++|++|+++ .+.+..+.. +..++.|+.|++++| .+..++ .+..+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls-~N~I~~i~~--l~~l~~L~~L~l~~N---~i~~~~-~~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS-FNKITKLEG--LSTLTLLKELNLSGN---LISDIS-GLESLKS 163 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecc-ccccccccc--hhhccchhhheeccC---cchhcc-CCccchh
Confidence 4455678889999999988877 7889999999999 666777765 677888999999999 777765 5556888
Q ss_pred CCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 593 LQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 593 L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
|+.+++.+|.+..++.. ...+.+|+.+++.+|. +..+.. +..+..+..+++..|.+..
T Consensus 164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred hhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhccccccee
Confidence 99999999988888654 5788889999988883 343332 4445555555555555443
No 130
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.85 E-value=0.00013 Score=74.77 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=104.9
Q ss_pred CCcccchhHHHHHHHHHHhcCC---ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHH
Q 041248 157 EPTIVGLQSQLEQVWRCLVEES---VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
.+.|.+|+.++..+..++.+.. ...|.|+|..|.|||.+.+++.+.. . -..+|+++-+.++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHHH
Confidence 4678999999999999997643 3445899999999999999999876 1 13589999999999999999999
Q ss_pred HcCCCCCccCC-----CCHHHHHHHHHH--Hhc--CCcEEEEEecccCcccccccccC----CC-CCCCCCcEEEEEcCc
Q 041248 234 KIGLVDDSWKS-----KSVEEKALDIFR--SLR--EKRFVLLLDDIWERVDLTKMGIP----LS-GPKNTTSKVVFTTRF 299 (813)
Q Consensus 234 ~l~~~~~~~~~-----~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~~~~~----l~-~~~~~~s~ilvTtR~ 299 (813)
..+....+... .+..+.+..+.+ ... ++.++||||+++.-.|.+....+ +. ....+.. +|+++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecc
Confidence 98632211111 111222333333 122 45899999999765554432111 00 0111223 3333321
Q ss_pred c--c-ccccCCCC--cceEcCCCCHHHHHHHHHHhh
Q 041248 300 V--D-VCGSMEAD--KKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 300 ~--~-v~~~~~~~--~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
. . ....++.. .++..+.-+.+|...++.+.-
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 1 1 12223333 355678889999988887653
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00039 Score=77.36 Aligned_cols=176 Identities=14% Similarity=0.163 Sum_probs=101.6
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCC------------------CCEEEEEEe
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTS------------------FDCVIWAVV 218 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~------------------f~~~~wv~~ 218 (813)
..++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.++......... +...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 4579999999999999987544 456789999999999999988865210000 011111111
Q ss_pred cCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH-----hcCCcEEEEEecccCc--ccccccccCCCCCCCCCc
Q 041248 219 SKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS-----LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTS 291 (813)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s 291 (813)
+.. ...++ ++.+.+. ..+++-++|+|+++.. .....+...+ .......
T Consensus 96 as~-----------------------~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~L-Eepp~~~ 150 (486)
T PRK14953 96 ASN-----------------------RGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTL-EEPPPRT 150 (486)
T ss_pred ccC-----------------------CCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHH-hcCCCCe
Confidence 111 11111 1122222 2356679999998643 2233333333 2222334
Q ss_pred EEE-EEcCccccccc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 292 KVV-FTTRFVDVCGS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 292 ~il-vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
.+| .||+...+... ......+++.+++.++....+.+.+.......+ .+.+..|++.++|.+..+..
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 444 45554333221 223457899999999999888887654332222 35677888999997765433
No 132
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.82 E-value=0.00015 Score=77.80 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=56.3
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQE 229 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (813)
..+++.+..++.+...+.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||++++.++..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 3468888899999998864 3578889999999999999999987 4445788899999998887666653
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00044 Score=76.89 Aligned_cols=193 Identities=10% Similarity=0.088 Sum_probs=105.3
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|-+..++.+...+..+... ++.++|+.|+||||+|+.+++..... ...+. .+...-.....+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~-~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE-QGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC-CCCCC-------CCCcccHHHHHHhhcCC
Confidence 46899999999999999876554 56899999999999999988765110 00000 00000000111111000
Q ss_pred CCCCcc---CCCCHHHHHHHHHH----HhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCcc-cccc-c
Q 041248 237 LVDDSW---KSKSVEEKALDIFR----SLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFV-DVCG-S 305 (813)
Q Consensus 237 ~~~~~~---~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~~-~ 305 (813)
...-.. .....++....+.. -..+++-++|+|++... .....+...+ -.....+++|++|.+. .+.. .
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~L-EEpp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTL-EEPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHH-hhcCCceEEEEEECChhhCchHH
Confidence 000000 00011222211111 01245668899999643 2233333333 2223456666655543 2221 1
Q ss_pred CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 306 MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 306 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
......+++.+++.++....+.+.+......-+ .+.+..|++.++|.+.-+..+
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 233568899999999999998877654432222 367889999999988555443
No 134
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.81 E-value=4.7e-06 Score=83.97 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=72.8
Q ss_pred ccceeEEecccccccc-----c-ccCCCCCceeEEEeeecc--c-cccccch------hhcCCCcccEEEeccCCccccc
Q 041248 517 WENVRRLSLMQNQIEI-----L-SEVPTCPHLLTLFLDFNY--K-LEMITDG------FFQCMPSLKVLKMSNCGHVKVL 581 (813)
Q Consensus 517 ~~~~~~l~l~~~~~~~-----l-~~~~~~~~L~~L~l~~~~--~-~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~ 581 (813)
...+..+++++|.+.. + +.+.+.++|+..++++-. . ...+|+. .+.+++.|++||||.| .+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN---A~G 105 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN---AFG 105 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc---ccC
Confidence 3466677777776532 1 123445566666665211 0 0112211 1334456666666666 332
Q ss_pred -----ccCccccCCCCCCEEeecCCCCcccc--------------hhhcCCCCCcEEeccCcccccccch----hhhcCC
Q 041248 582 -----KLPFGMSKLGSLQLLDISHAGIRELP--------------EELKLLVNLKCLNLRWTRMLNKIPR----LLISNS 638 (813)
Q Consensus 582 -----~lp~~i~~L~~L~~L~l~~~~i~~lp--------------~~~~~l~~L~~L~l~~~~~l~~lp~----~~i~~L 638 (813)
.+-.-|.++..|+.|.|.+|.+...- +-+.+-++|+.+....| .+..-+. ..+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhc
Confidence 11123344555666666666543211 11233445555555544 3333322 123444
Q ss_pred CCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcch
Q 041248 639 SWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSY 690 (813)
Q Consensus 639 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 690 (813)
+.|+.+.+..|++..-. .......|..+++|++|++.-|-+
T Consensus 185 ~~leevr~~qN~I~~eG-----------~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEG-----------VTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred cccceEEEecccccCch-----------hHHHHHHHHhCCcceeeecccchh
Confidence 55555555555443210 112334455666666666655544
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.81 E-value=0.00027 Score=77.77 Aligned_cols=159 Identities=22% Similarity=0.216 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
...+.|+|..|+|||+|++.+++... ....-..+++++. .++...+...+... .. ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHH
Confidence 35689999999999999999999872 2211224556643 33444454444311 11 2233333
Q ss_pred cCCcEEEEEecccCccc---c-cccccCCCCCCCCCcEEEEEcCccc---------ccccCCCCcceEcCCCCHHHHHHH
Q 041248 259 REKRFVLLLDDIWERVD---L-TKMGIPLSGPKNTTSKVVFTTRFVD---------VCGSMEADKKFQVACLSEEDAWEL 325 (813)
Q Consensus 259 ~~k~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~~s~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~L 325 (813)
++ .-+|++||+..... + +.+...+......+..+|+|+.... +...+.....+++++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 33888999964211 1 1121111001123456788776421 223333445789999999999999
Q ss_pred HHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 326 FRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
+.+.+......-+ +++...|++.+.|.+-.+
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHH
Confidence 9998865432222 467788888888876544
No 136
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00048 Score=76.12 Aligned_cols=181 Identities=18% Similarity=0.200 Sum_probs=103.2
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCC--------------------CCCCEEEEE
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP--------------------TSFDCVIWA 216 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~--------------------~~f~~~~wv 216 (813)
.+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++...... .+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4689999999999999987654 5678999999999999999988762110 0111 1111
Q ss_pred EecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE
Q 041248 217 VVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV 294 (813)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il 294 (813)
........+++ +++.+.+. .....+++-++|+|++... .....+...+ ........+|
T Consensus 96 ~g~~~~gid~i-r~i~~~l~------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~l-Eep~~~~~~I 155 (451)
T PRK06305 96 DGASHRGIEDI-RQINETVL------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTL-EEPPQHVKFF 155 (451)
T ss_pred eccccCCHHHH-HHHHHHHH------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHh-hcCCCCceEE
Confidence 10000011111 11111110 0012356678899998643 2233333333 2222355565
Q ss_pred EEc-Cccccccc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch-HHHHH
Q 041248 295 FTT-RFVDVCGS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL-ALITI 362 (813)
Q Consensus 295 vTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 362 (813)
++| +...+... ......+++.++++++....+.+.+......-+ .+.++.|++.++|.+- |+..+
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 555 33333221 233567899999999999888877643321122 3567899999999664 44443
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00044 Score=79.40 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=107.9
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++... -..... ....+......+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4689999999999888876554 4568999999999999999988761 000000 0011122233333333221
Q ss_pred CCCCcc---CCCCHHHHHHHHHHHh-----cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcC-cccccc-
Q 041248 237 LVDDSW---KSKSVEEKALDIFRSL-----REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTR-FVDVCG- 304 (813)
Q Consensus 237 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR-~~~v~~- 304 (813)
...-.. .....++. ..+.+.+ .+++-++|+|++... .....+...+ ......+.+|++|. ...+..
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~L-Eepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTL-EEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHH-hcCCCCeEEEEEeCChhhhhHH
Confidence 110000 01112221 2222221 245678999998643 3344443333 22223455655553 333321
Q ss_pred cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 305 SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 305 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
.......+++..++.++....+.+.+......-+ .+.+..|++.++|.+..+..
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1123457889999999999988887654432222 35688999999998865533
No 138
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=8.2e-06 Score=93.98 Aligned_cols=139 Identities=20% Similarity=0.131 Sum_probs=74.6
Q ss_pred CceeEEEeeecccc-ccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcE
Q 041248 540 PHLLTLFLDFNYKL-EMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKC 618 (813)
Q Consensus 540 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 618 (813)
.+|+.|+++|...+ ..++......+|.|+.|.+++-.. ....+-....++++|..||+++|+++.+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 46777777654332 234445455667777777776511 1112223345667777777777777777 66777777777
Q ss_pred EeccCcccccccch-hhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcch
Q 041248 619 LNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSY 690 (813)
Q Consensus 619 L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 690 (813)
|.+++=. +...+. -.+.+|++|++|+++.......+. .-...++--..|++||.|+.++...
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~---------ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTK---------IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchH---------HHHHHHHhcccCccccEEecCCcch
Confidence 7665432 221110 115567777777777533322110 0111122223466777777765544
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.78 E-value=0.0002 Score=85.29 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=98.3
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CCEEEE-EEecCccCHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTS----FDCVIW-AVVSKDLRLEKIQEDIG 232 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i~ 232 (813)
..++||+.++.++++.|......-+.++|.+|+||||+|+.+++... .... .+..+| +..+.- .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~-~~~v~~~l~~~~i~~l~l~~l----------~ 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA-AGDVPPALRNVRLLSLDLGLL----------Q 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh-hCCCCccccCCeEEEeehhhh----------h
Confidence 45799999999999999877777788999999999999999998762 1111 122333 222110 0
Q ss_pred HHcCCCCCccCCCCHHHHHHHHHHHh--cCCcEEEEEecccCcc------cccccccCCCCCCCCC-cEEEEEcCccccc
Q 041248 233 KKIGLVDDSWKSKSVEEKALDIFRSL--REKRFVLLLDDIWERV------DLTKMGIPLSGPKNTT-SKVVFTTRFVDVC 303 (813)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~-s~ilvTtR~~~v~ 303 (813)
. + .. .....++.+..+...+ .+++.+|++|++.... .-.+....+.+.-..| -++|-||...+..
T Consensus 256 a--g---~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 256 A--G---AS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYK 329 (852)
T ss_pred c--c---cc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHh
Confidence 0 0 00 0111222333333322 2468999999985421 1111100111222233 4555555543221
Q ss_pred c-------cCCCCcceEcCCCCHHHHHHHHHHhhCCCcc-CCChhHHHHHHHHHHHhCCcc
Q 041248 304 G-------SMEADKKFQVACLSEEDAWELFRKKVGEETL-ESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 304 ~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~GlP 356 (813)
. .......+.+++++.++..+++......... ..-.-..+....+++.+.+..
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 1 1122358999999999999997554421110 000111345566777776543
No 140
>PRK06620 hypothetical protein; Validated
Probab=97.77 E-value=0.00023 Score=70.29 Aligned_cols=132 Identities=12% Similarity=0.015 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR 259 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (813)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . + ...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHHh
Confidence 669999999999999999987764 11 1111 0000 0 0 0111
Q ss_pred CCcEEEEEecccCccc--ccccccCCCCCCCCCcEEEEEcCcccc-------cccCCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 260 EKRFVLLLDDIWERVD--LTKMGIPLSGPKNTTSKVVFTTRFVDV-------CGSMEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 260 ~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~s~ilvTtR~~~v-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
..-++++||+....+ +-.+...+ ...|..||+|++...- .+.+.....++++++++++-..++.+.+
T Consensus 85 -~~d~lliDdi~~~~~~~lf~l~N~~---~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 -KYNAFIIEDIENWQEPALLHIFNII---NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred -cCCEEEEeccccchHHHHHHHHHHH---HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 234788899963221 11111111 1346688998885432 2223344578999999999888888776
Q ss_pred CCCccCCChhHHHHHHHHHHHhCCcchH
Q 041248 331 GEETLESDHDIVELAQTVAKECGGLPLA 358 (813)
Q Consensus 331 ~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (813)
......-+ +++.+-|++.+.|.--.
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCHHH
Confidence 53322222 35677777777665433
No 141
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.77 E-value=0.00015 Score=78.87 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=96.3
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
.++.|.+.+++++.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc---
Confidence 3568999999988887631 234568899999999999999999976 3333 222111
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------ccccccCCCC-CC
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD----------------LTKMGIPLSG-PK 287 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~ 287 (813)
.+.. .. ...........+.....+.+.+++||+++.... +..+...+.. ..
T Consensus 252 -eL~~----k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 -ELIQ----KY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred -hhhh----hh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1111 00 011111122222223346788999999853110 0011111100 11
Q ss_pred CCCcEEEEEcCccccccc-----CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 288 NTTSKVVFTTRFVDVCGS-----MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
..+.+||.||........ -.....|+++..+.++..++|..++.......+.++ ..++..+.|.-
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 235677877775443211 123467899999999999999988755442233333 45555665543
No 142
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.77 E-value=0.00029 Score=72.97 Aligned_cols=154 Identities=11% Similarity=0.086 Sum_probs=79.2
Q ss_pred cccchhHHHHHHHHHHh---c------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccC
Q 041248 159 TIVGLQSQLEQVWRCLV---E------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLR 223 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 223 (813)
.++|-+..+++|.+... - ....-+.++|++|+|||++|+.++... .........-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l-~~~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL-HRLGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH-HHcCCcccceEEEecH---
Confidence 46777666666544321 0 012358899999999999998877765 2112211112444432
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc-----------ccccccccCCCCCCCCCcE
Q 041248 224 LEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER-----------VDLTKMGIPLSGPKNTTSK 292 (813)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~s~ 292 (813)
.++ ...+.. ...... ..+.+.. ..-+|++|++... ..+..+...+ .....+.+
T Consensus 99 -~~l----~~~~~g-------~~~~~~-~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~l-e~~~~~~~ 162 (284)
T TIGR02880 99 -DDL----VGQYIG-------HTAPKT-KEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM-ENQRDDLV 162 (284)
T ss_pred -HHH----hHhhcc-------cchHHH-HHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHH-hcCCCCEE
Confidence 122 211110 111111 1222222 2358889999622 1122222223 23334556
Q ss_pred EEEEcCcccccccC--------CCCcceEcCCCCHHHHHHHHHHhhCC
Q 041248 293 VVFTTRFVDVCGSM--------EADKKFQVACLSEEDAWELFRKKVGE 332 (813)
Q Consensus 293 ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~Lf~~~~~~ 332 (813)
||+++........+ .....+++++++.+|-.+++...+..
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 77666532221100 12356899999999999998887643
No 143
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00013 Score=80.36 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFD-CVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
...+.|+|..|+|||+|++.+++... ..+.+ .++|++. .++..++...+... .. ..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~----~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KL----NEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cH----HHHHHH
Confidence 34699999999999999999999862 22222 4666653 34555555554311 11 223333
Q ss_pred hcCCcEEEEEecccCcc---cc-cccccCCCCCCCCCcEEEEEcCc-cc--------ccccCCCCcceEcCCCCHHHHHH
Q 041248 258 LREKRFVLLLDDIWERV---DL-TKMGIPLSGPKNTTSKVVFTTRF-VD--------VCGSMEADKKFQVACLSEEDAWE 324 (813)
Q Consensus 258 l~~k~~LlVlDdv~~~~---~~-~~~~~~l~~~~~~~s~ilvTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~ 324 (813)
++.+.-+|++||+.... .+ ..+...+......+..||+||.. .. +.+.+.....+.+++.+.++-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 33445689999996421 11 12211110011234578888752 21 12333445678999999999999
Q ss_pred HHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 325 LFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 325 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
++.+.+......-+ +++...|++.+.|..-.+
T Consensus 271 IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 271 IARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 99988764332222 367888888888765444
No 144
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=4.4e-05 Score=71.19 Aligned_cols=102 Identities=23% Similarity=0.348 Sum_probs=80.0
Q ss_pred ceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC--ccccCCCCCCEE
Q 041248 519 NVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP--FGMSKLGSLQLL 596 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp--~~i~~L~~L~~L 596 (813)
....+++..|++..++.++.+++|.+|.+. ++.+..+.+..-..+++|..|.|.+| ++.++- ..+..++.|++|
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~-nNrIt~I~p~L~~~~p~l~~L~LtnN---si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLN-NNRITRIDPDLDTFLPNLKTLILTNN---SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEec-CCcceeeccchhhhccccceEEecCc---chhhhhhcchhccCCcccee
Confidence 455688888888888888999999999998 77888888886777788999999999 676653 245667888888
Q ss_pred eecCCCCcccchh----hcCCCCCcEEeccCc
Q 041248 597 DISHAGIRELPEE----LKLLVNLKCLNLRWT 624 (813)
Q Consensus 597 ~l~~~~i~~lp~~----~~~l~~L~~L~l~~~ 624 (813)
.+-+|.++..+.. +.++++|++||+..-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888877766543 667788888887653
No 145
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.73 E-value=0.00068 Score=68.75 Aligned_cols=198 Identities=16% Similarity=0.126 Sum_probs=113.8
Q ss_pred cccchh---HHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC----EEEEEEecCccCHHHHH
Q 041248 159 TIVGLQ---SQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFD----CVIWAVVSKDLRLEKIQ 228 (813)
Q Consensus 159 ~~vGr~---~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~ 228 (813)
.++|-. ..++.+.+++.. ...+-+.|+|.+|.|||++++++...+. ....-+ .++.|......+...++
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHHH
Confidence 445543 234555555543 2456799999999999999999998772 111111 47777788888999999
Q ss_pred HHHHHHcCCCCCccCCCCHHHHHHHHHHHhcC-CcEEEEEecccCc-----ccccccc---cCCCCCCCCCcEEEEEcCc
Q 041248 229 EDIGKKIGLVDDSWKSKSVEEKALDIFRSLRE-KRFVLLLDDIWER-----VDLTKMG---IPLSGPKNTTSKVVFTTRF 299 (813)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~~~---~~l~~~~~~~s~ilvTtR~ 299 (813)
..|+.+++.+... ..+...........++. +.-+||+|++.+. ..-..+. ..+ ...-.-+-|.+-|+.
T Consensus 114 ~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L-~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 114 SAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFL-GNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHH-hhccCCCeEEeccHH
Confidence 9999999987642 23334444444445443 4458899999652 1111111 111 122233456666663
Q ss_pred ccccccC-----CCCcceEcCCCCHH-HHHHHHHHhhCC--CccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 300 VDVCGSM-----EADKKFQVACLSEE-DAWELFRKKVGE--ETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 300 ~~v~~~~-----~~~~~~~l~~L~~~-~~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
--.+-.. .-..++.|+....+ +...|+...... -...+.-...++++.|...++|+.--+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 3221111 11345666666643 444454333211 1111222336789999999999875543
No 146
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00064 Score=77.83 Aligned_cols=193 Identities=15% Similarity=0.099 Sum_probs=106.3
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+..++.|..++..+. ...+.++|+.|+||||+|+.+++... ....+.. ....+..-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCC----CCCCCcccHHHHHHhcCCC
Confidence 457999999999999988764 35778999999999999999988862 1111100 0011112223333332221
Q ss_pred CCC---CccCCCCHHHHHHHHHHHh-----cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-EEcCcccccc-
Q 041248 237 LVD---DSWKSKSVEEKALDIFRSL-----REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV-FTTRFVDVCG- 304 (813)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il-vTtR~~~v~~- 304 (813)
... ........++. +.+.+.+ .+++-++|+|++... ..+..+...+ -.......+| +|+....+..
T Consensus 90 ~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~L-EePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTL-EEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHH-hcCCcCeEEEEEeCChhhhhHH
Confidence 100 00001111111 2222221 245668899999743 3344443333 2222334444 4544333322
Q ss_pred cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 305 SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 305 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
.......+++..++.++....+.+.+......-+ .+.+..|++.++|.+..+..
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1233567888999999988888776654321222 25678999999998765433
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.0012 Score=75.37 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=104.5
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
.+++|.+..++.|.+.+..+.. ..+.++|+.|+||||+|+.+++..... ...+ ...+........|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~-~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE-QGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC-CCCC-------CCCCCccHHHHHHhcCCC
Confidence 4689999999999999887654 456899999999999999998875211 1000 001111111111111000
Q ss_pred CCCCcc---CCCCHHHHHHHHHHHh-----cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-EEcCccccccc
Q 041248 237 LVDDSW---KSKSVEEKALDIFRSL-----REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV-FTTRFVDVCGS 305 (813)
Q Consensus 237 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il-vTtR~~~v~~~ 305 (813)
...-.. .....++ +..+.+.+ .+++-++|+|++... .....+...+ -.....+.+| +||....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~L-Eepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTL-EEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHH-HcCCCCeEEEEEeCChhhhhHH
Confidence 000000 0011111 12222221 345568899999643 2233333333 1222344554 55554444322
Q ss_pred -CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc-hHHHHH
Q 041248 306 -MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP-LALITI 362 (813)
Q Consensus 306 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~ 362 (813)
......+++.+++.++....+...+......-+ .+.+..|++.++|.. .|+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 234567889999999998888876644332222 356788999999865 454444
No 148
>CHL00181 cbbX CbbX; Provisional
Probab=97.71 E-value=0.00061 Score=70.53 Aligned_cols=133 Identities=12% Similarity=0.135 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR 259 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (813)
..+.++|++|+||||+|+.+++.. .....-...-|+.++. .++.... .+ ...... ..+.+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~----~~l~~~~---~g--------~~~~~~-~~~l~~a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTR----DDLVGQY---IG--------HTAPKT-KEVLKKAM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecH----HHHHHHH---hc--------cchHHH-HHHHHHcc
Confidence 347889999999999999998765 1111111112444431 1222111 11 011111 22222222
Q ss_pred CCcEEEEEecccCc-----------ccccccccCCCCCCCCCcEEEEEcCcccccccC--------CCCcceEcCCCCHH
Q 041248 260 EKRFVLLLDDIWER-----------VDLTKMGIPLSGPKNTTSKVVFTTRFVDVCGSM--------EADKKFQVACLSEE 320 (813)
Q Consensus 260 ~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~ 320 (813)
.-+|++|++... .....+...+ .....+.+||+++......... .....+.+++++.+
T Consensus 123 --ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~m-e~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 123 --GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVM-ENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --CCEEEEEccchhccCCCccchHHHHHHHHHHHH-hcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 248999999642 1112222222 2333456677776533321100 12457899999999
Q ss_pred HHHHHHHHhhCC
Q 041248 321 DAWELFRKKVGE 332 (813)
Q Consensus 321 ~~~~Lf~~~~~~ 332 (813)
+..+++...+..
T Consensus 200 el~~I~~~~l~~ 211 (287)
T CHL00181 200 ELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.0032 Score=69.38 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR 259 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (813)
..+.|+|+.|+|||+|++.+++... . ....+++++ ...+...+...+... . ...++..++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~-~--~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR-E--SGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH-H--cCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 5688999999999999999999872 1 123345554 234444554444311 1 123344443
Q ss_pred CCcEEEEEecccCccc----ccccccCCCCCCCCCcEEEEEcCcc---------cccccCCCCcceEcCCCCHHHHHHHH
Q 041248 260 EKRFVLLLDDIWERVD----LTKMGIPLSGPKNTTSKVVFTTRFV---------DVCGSMEADKKFQVACLSEEDAWELF 326 (813)
Q Consensus 260 ~k~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 326 (813)
. .-++++||+..... .+.+...+......|..||+||... .+.+.+.....+++.+++.++...++
T Consensus 202 ~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 N-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred c-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3 34788899854211 1122211100012355788887542 12333444568899999999999999
Q ss_pred HHhhCCCccCCChhHHHHHHHHHHHhCCc
Q 041248 327 RKKVGEETLESDHDIVELAQTVAKECGGL 355 (813)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (813)
.+++......-+ +++..-|+..+.|.
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 988754432222 35566677766644
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.70 E-value=0.0003 Score=76.15 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=96.8
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
.++.|.+..++++.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3578999988888876531 245678999999999999999999976 2333 11111
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc------------c----ccccccCCCC-CC
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV------------D----LTKMGIPLSG-PK 287 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~-~~ 287 (813)
..+... ..+ .........+.......+.+|++|+++... . +..+...+.. ..
T Consensus 213 s~l~~k---~~g--------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SEFVQK---YLG--------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHHHHH---hcc--------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111111 111 111111222223334678999999985320 0 1111111100 12
Q ss_pred CCCcEEEEEcCcccccc-----cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 288 NTTSKVVFTTRFVDVCG-----SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
..+..||.||....... ...-...++++..+.++..++|...........+.+ ..++++.+.|..
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 24567777777554321 112345789999999998888887765443222223 345666776654
No 151
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.69 E-value=0.00088 Score=71.26 Aligned_cols=143 Identities=12% Similarity=0.139 Sum_probs=81.6
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+...+.+..++..+. ..++.++|++|+||||+|+.+++.. ... ...++.+. .....+...+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~--- 90 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTR--- 90 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHH---
Confidence 467999999999999987665 4567779999999999999998875 221 22333333 111111111111
Q ss_pred CCCCccCCCCHHHHHHHHHHH--hcCCcEEEEEecccCc--cc-ccccccCCCCCCCCCcEEEEEcCccccc-c-cCCCC
Q 041248 237 LVDDSWKSKSVEEKALDIFRS--LREKRFVLLLDDIWER--VD-LTKMGIPLSGPKNTTSKVVFTTRFVDVC-G-SMEAD 309 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~--~~-~~~~~~~l~~~~~~~s~ilvTtR~~~v~-~-~~~~~ 309 (813)
+... +.+.+-++|+||+... .+ ...+...+ .....++++|+||...... . ..+..
T Consensus 91 -----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~l-e~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 91 -----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFM-EAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred -----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHH-HhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111 1234568899999643 11 12222222 2334567888888643211 1 11223
Q ss_pred cceEcCCCCHHHHHHHHHH
Q 041248 310 KKFQVACLSEEDAWELFRK 328 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~ 328 (813)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4567777777777666543
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.67 E-value=0.00027 Score=78.86 Aligned_cols=159 Identities=21% Similarity=0.215 Sum_probs=93.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
...+.|+|..|+|||+|++.+++... ....-..+++++.. ++...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 35689999999999999999999872 21112335566432 333444444321 111 2233333
Q ss_pred cCCcEEEEEecccCcc----cccccccCCCCCCCCCcEEEEEcCccc---------ccccCCCCcceEcCCCCHHHHHHH
Q 041248 259 REKRFVLLLDDIWERV----DLTKMGIPLSGPKNTTSKVVFTTRFVD---------VCGSMEADKKFQVACLSEEDAWEL 325 (813)
Q Consensus 259 ~~k~~LlVlDdv~~~~----~~~~~~~~l~~~~~~~s~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~L 325 (813)
+ +.-+||+||+.... ..+.+...+......+..||+|+.... +.+.+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 34488999996321 112222111001123455788776432 233444456789999999999999
Q ss_pred HHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 326 FRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
+.+.+......-+ +++...|++.++|..-.+
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHH
Confidence 9998864332222 367888999888876644
No 153
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.66 E-value=0.00029 Score=83.30 Aligned_cols=155 Identities=18% Similarity=0.269 Sum_probs=88.8
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccC--CCCC-CEEEEEEecCccCHHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLES--PTSF-DCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~~f-~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
+.++||+++++++++.|......-+.++|++|+|||++|+.+++..... ...+ +..+|.. +... +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~----l~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGS----LLAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHH----Hhhh
Confidence 3579999999999999887666778899999999999999999876211 1111 3334421 1111 1110
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCcc----------cccccccCCCCCCCCC-cEEEEEcCcccc
Q 041248 235 IGLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWERV----------DLTKMGIPLSGPKNTT-SKVVFTTRFVDV 302 (813)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~~~-s~ilvTtR~~~v 302 (813)
.. -....++.+..+.+.+ ..++.+|++|++..-. +...+..+. -..| -++|-+|...+.
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~---l~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPA---LSSGKLRCIGSTTYEEY 323 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHH---HhCCCeEEEEecCHHHH
Confidence 00 0112334444444444 3467899999996321 111222121 1223 344444443221
Q ss_pred c-------ccCCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 303 C-------GSMEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 303 ~-------~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
. ........++++.++.++..+++....
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 0 001123578999999999999998655
No 154
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.65 E-value=1.6e-05 Score=80.15 Aligned_cols=247 Identities=20% Similarity=0.107 Sum_probs=144.1
Q ss_pred cCCCCCceeEEEeeeccccc---cccchhhcCCCcccEEEeccCC-cccccccCcc-------ccCCCCCCEEeecCCCC
Q 041248 535 EVPTCPHLLTLFLDFNYKLE---MITDGFFQCMPSLKVLKMSNCG-HVKVLKLPFG-------MSKLGSLQLLDISHAGI 603 (813)
Q Consensus 535 ~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~l~~L~~L~l~~~~-~~~~~~lp~~-------i~~L~~L~~L~l~~~~i 603 (813)
....+..++.|++++|..-. ..-...+.+.+.|+..++++-- +....++|+. +-.+++|++||||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 34567788899999654211 1112236667788888888630 0022344433 33456899999998843
Q ss_pred c-----ccchhhcCCCCCcEEeccCcccccccchhh-------------hcCCCCCceeeccccccCCCCCCCccccccC
Q 041248 604 R-----ELPEELKLLVNLKCLNLRWTRMLNKIPRLL-------------ISNSSWLRVLRMFAIGFENSEEPSEDSVLIG 665 (813)
Q Consensus 604 ~-----~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~-------------i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 665 (813)
. .+-.-+..++.|++|.|.+|. +...-.+. ++.-++|+++....|+....+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g---------- 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG---------- 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc----------
Confidence 2 233346778899999998884 33221111 233467788877776655432
Q ss_pred CccchhHHhhcCCCCcEEEEEEcchhh--HHhhhcchhhhhcceeeeecccCCcc--cccc-cccccccccceeeecccC
Q 041248 666 GGEVLVHELLGLRYLEVLELTLRSYDA--LQFFLSSNKLKSCIRSLFLNKLGGTK--SIHA-TAFSDLKHLNELCIRSAV 740 (813)
Q Consensus 666 ~~~~~~~~l~~L~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~--~l~~-~~l~~l~~L~~L~l~~~~ 740 (813)
-...-..++..+.|+.+.+..|.+.. ...+......+++|+.|+|.++.--. ...+ ..++.+++|+.|+++.|.
T Consensus 174 -a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 174 -ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred -HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 11233456777889988888777632 22333344456789999988743111 1111 246677889999998875
Q ss_pred ccceeeecccccCCCCCCcccccCcceEeeccCcCCCc----cc-chhcCCCCceEeeecCch
Q 041248 741 ELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKD----LT-FLVCAPSLKSLSLYGCNA 798 (813)
Q Consensus 741 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~----l~-~l~~l~~L~~L~l~~c~~ 798 (813)
- +.-....+. .... ...|+|+.|.+.+|.--.+ +- .....|.|+.|+|++|.-
T Consensus 253 l-~~~Ga~a~~--~al~--~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 L-ENEGAIAFV--DALK--ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred c-ccccHHHHH--HHHh--ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 210000000 0000 2478899999888763222 11 234578999999988765
No 155
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00011 Score=77.99 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=69.9
Q ss_pred cceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEe
Q 041248 518 ENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLD 597 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~ 597 (813)
..+++|+++.+.+..+|.++ ++|++|.+++|+.+..+|.. + .++|++|++++|. .+..+|+ +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs--~L~sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCP--EISGLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcc--ccccccc------ccceEE
Confidence 35667777777666665332 35888888777777666654 2 2577888888775 4555663 355555
Q ss_pred ecCC---CCcccchhhcCC------------------CCCcEEeccCcccccccchhhhcCCCCCceeecccc
Q 041248 598 ISHA---GIRELPEELKLL------------------VNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAI 649 (813)
Q Consensus 598 l~~~---~i~~lp~~~~~l------------------~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 649 (813)
+.++ .+..+|+++..| .+|++|++++|.. ..+|.. +- .+|++|.++.+
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~-i~LP~~-LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN-IILPEK-LP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc-ccCccc-cc--ccCcEEEeccc
Confidence 6554 355666665444 2577777777743 334443 22 36677776544
No 156
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.00092 Score=75.64 Aligned_cols=190 Identities=14% Similarity=0.106 Sum_probs=105.4
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|-+..++.+..++.++.. ..+.++|+.|+||||+|+.+++..... ..... .++..-...+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~-~~~~~-------~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV-NGPTP-------MPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc-cCCCC-------CCCccchHHHHHHcCCC
Confidence 4689999999999999987654 468899999999999999998876211 10000 00000011111111100
Q ss_pred CCC---CccCCCCHHHHHHHHHH-----HhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEc-Ccccccc-
Q 041248 237 LVD---DSWKSKSVEEKALDIFR-----SLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTT-RFVDVCG- 304 (813)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~-----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTt-R~~~v~~- 304 (813)
... +.......++.. .+.+ -..+++-++|+|++... ..+..+...+ ......+.+|++| ....+..
T Consensus 88 ~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~L-Eepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTI-EEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhh-ccCCCCEEEEEecCChHHhHHH
Confidence 000 000011122221 1211 12356668999999643 3344444444 2223455555554 3333321
Q ss_pred cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 305 SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 305 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
.......+++.+++.++....+.+.+......-+ .+.+..|++.++|.+..+.
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 1223457899999999999888887644332222 3667889999999875443
No 157
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=2.6e-05 Score=89.86 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=87.3
Q ss_pred cceeEEecccccccc---cc-cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCC
Q 041248 518 ENVRRLSLMQNQIEI---LS-EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSL 593 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~---l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L 593 (813)
..+++|++.+...-. +. -...+|.|++|.+.+......--...+.++++|+.||+|++ +++.+ ..|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T---nI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT---NISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC---CccCc-HHHhccccH
Confidence 378888887643211 11 13568999999998422111111123667899999999999 88887 589999999
Q ss_pred CEEeecCCCCcccc--hhhcCCCCCcEEeccCccccccc--ch---hhhcCCCCCceeecccccc
Q 041248 594 QLLDISHAGIRELP--EELKLLVNLKCLNLRWTRMLNKI--PR---LLISNSSWLRVLRMFAIGF 651 (813)
Q Consensus 594 ~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~l--p~---~~i~~L~~L~~L~l~~~~~ 651 (813)
+.|.+++=.+..-+ ..+.+|++|++||+|........ .. ..-..|++||.|+.+++.+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99999887666433 34678999999999987542221 11 1123488999999986543
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0024 Score=71.74 Aligned_cols=158 Identities=21% Similarity=0.163 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR 259 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (813)
..+.|+|..|+|||.|++.+++... ....-..+++++. .++..++...+.. .. ...+++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 4589999999999999999999862 1111223556543 3444444443321 11 122333333
Q ss_pred CCcEEEEEecccCc---cccc-ccccCCCCCCCCCcEEEEEcCcc---------cccccCCCCcceEcCCCCHHHHHHHH
Q 041248 260 EKRFVLLLDDIWER---VDLT-KMGIPLSGPKNTTSKVVFTTRFV---------DVCGSMEADKKFQVACLSEEDAWELF 326 (813)
Q Consensus 260 ~k~~LlVlDdv~~~---~~~~-~~~~~l~~~~~~~s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 326 (813)
+ .=+|||||+... ..|+ .+...+......+..|||||+.. .+.+.+...-.++++..+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 347889999632 1121 12111101112356788888753 12344455678899999999999999
Q ss_pred HHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 327 RKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
.+++.......+ ++++.-|++.+.+..-.+
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 998865543332 366777777776654433
No 159
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0082 Score=62.99 Aligned_cols=196 Identities=15% Similarity=0.131 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCC------------CCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESP------------TSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~------------~~f~~~~wv~~~~~~~~ 224 (813)
..++|.+..++.+.+.+..++ .....++|+.|+||+++|..++....... ..+.-..|+.......-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 357999999999999998776 47889999999999999988877652110 11112234322100000
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEc
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-----REKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTT 297 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTt 297 (813)
..+-..-++..+...........++ ++.+.+.+ .+++-++|+|++.... ....+...+..+. ...-|++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 0000011111111000000111122 23344333 3566789999986532 2333332331222 333444555
Q ss_pred Ccccccc-cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 298 RFVDVCG-SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 298 R~~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
....+.. ..+....+++.++++++..+.+.+...... . ......++..++|.|..+..
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~----~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--L----NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--c----hhHHHHHHHHcCCCHHHHHH
Confidence 4444432 224567899999999999999998753221 0 11235889999999976644
No 160
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.62 E-value=0.0018 Score=69.10 Aligned_cols=259 Identities=19% Similarity=0.163 Sum_probs=135.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC--EEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFD--CVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIF 255 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (813)
....+.|||..|.|||.|++++.+... .... .+++++ .+.....++..+.. .....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~---~~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL---ANGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH---hhCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHH
Confidence 367999999999999999999999872 3333 244332 33344444433321 2234455
Q ss_pred HHhcCCcEEEEEecccCcc---c-ccccccCCCCCCCCCcEEEEEcCccc---------ccccCCCCcceEcCCCCHHHH
Q 041248 256 RSLREKRFVLLLDDIWERV---D-LTKMGIPLSGPKNTTSKVVFTTRFVD---------VCGSMEADKKFQVACLSEEDA 322 (813)
Q Consensus 256 ~~l~~k~~LlVlDdv~~~~---~-~~~~~~~l~~~~~~~s~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~ 322 (813)
+.. .-=++++||++--. . -+++...+..-...|..||+|++... +.+.+...-.+++.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 555 33488899996321 1 12222222111233448999997432 234445567899999999999
Q ss_pred HHHHHHhhCCCccCCChhHHHHHHHHHHHhCC----cchHHHHHHHhhc-CC--CCHHHHHHHHHHHhchhhhccCchHH
Q 041248 323 WELFRKKVGEETLESDHDIVELAQTVAKECGG----LPLALITIGRAMA-FK--KTAEEWIHAIEVLRTSASEFAGLGEK 395 (813)
Q Consensus 323 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G----lPLai~~~~~~l~-~~--~~~~~w~~~~~~l~~~~~~~~~~~~~ 395 (813)
..++.+++.......++ +++.-|++.... +.-|+..+..+-. .+ -+...-+.++..+...... -..+.
T Consensus 250 ~aiL~kka~~~~~~i~~---ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~--itie~ 324 (408)
T COG0593 250 LAILRKKAEDRGIEIPD---EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK--ITIED 324 (408)
T ss_pred HHHHHHHHHhcCCCCCH---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc--CCHHH
Confidence 99999977655433332 333344443332 2223322221111 11 2344444444333322111 11112
Q ss_pred HHhHHHHhhcCCChhhHHHHHhhhccCCCCccccHHHHHHHHHHcCCcccccccchHhhHHHHHHHHHHhcccceecCCc
Q 041248 396 VYRLLKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEESDRFSAENQGYYIVGTLVHACLLEEVEDDK 475 (813)
Q Consensus 396 i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~ 475 (813)
+..++.- | |.++.+++. |=-.......+++++....++|..+||.+.+..-.
T Consensus 325 I~~~Va~-~---------------------y~v~~~dl~------s~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~Fg 376 (408)
T COG0593 325 IQKIVAE-Y---------------------YNVKVSDLL------SKSRTRNIVRPRQIAMYLARELTNLSLPEIGKAFG 376 (408)
T ss_pred HHHHHHH-H---------------------hCCCHHHhh------ccccccccchHHHHHHHHHHHHccCcHHHHHHHhC
Confidence 2222211 1 112222111 00111234457788888999999999999874444
Q ss_pred EEEeHHHHHHHHHHHhh
Q 041248 476 VKMHDVVRDMALWIACE 492 (813)
Q Consensus 476 ~~mHdlv~~~a~~~~~~ 492 (813)
+=|.-|-.-++.|...
T Consensus 377 -rdHtTV~~a~~kI~~~ 392 (408)
T COG0593 377 -RDHTTVLHAVRKIEQL 392 (408)
T ss_pred -CCccHHHHHHHHHHHH
Confidence 6666555555555443
No 161
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.61 E-value=2.7e-06 Score=93.07 Aligned_cols=130 Identities=23% Similarity=0.308 Sum_probs=95.1
Q ss_pred CccCccceeEEeccccccccccc-CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCc-cccCC
Q 041248 513 DVEGWENVRRLSLMQNQIEILSE-VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPF-GMSKL 590 (813)
Q Consensus 513 ~~~~~~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~-~i~~L 590 (813)
+...|..+...++++|.+..+.. +.-++.|+.|+++ .|++.++. ++..++.|++|||++| .+..+|. +...+
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLs-hNk~~~v~--~Lr~l~~LkhLDlsyN---~L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLS-HNKFTKVD--NLRRLPKLKHLDLSYN---CLRHVPQLSMVGC 232 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccc-hhhhhhhH--HHHhcccccccccccc---hhccccccchhhh
Confidence 44457788888888888776643 4557788999998 66666665 4778899999999999 7777773 22333
Q ss_pred CCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccch-hhhcCCCCCceeecccccc
Q 041248 591 GSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGF 651 (813)
Q Consensus 591 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~ 651 (813)
. |+.|+|++|-+++| .++.+|.+|+.||++.|- +..... ..++.|..|+.|.+.+|.+
T Consensus 233 ~-L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred h-heeeeecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 3 89999999988888 578899999999999883 332211 1256778888888888764
No 162
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.59 E-value=0.0011 Score=73.35 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=87.6
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCC---CCCEEEEEEecCcc
Q 041248 159 TIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPT---SFDCVIWAVVSKDL 222 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~---~f~~~~wv~~~~~~ 222 (813)
.+.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++... ... ......|+.+....
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccchh
Confidence 567899999998887631 1345689999999999999999999872 110 12234444443311
Q ss_pred CHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH-----hcCCcEEEEEecccCcc---------cc-----cccccCC
Q 041248 223 RLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS-----LREKRFVLLLDDIWERV---------DL-----TKMGIPL 283 (813)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~---------~~-----~~~~~~l 283 (813)
+ +... .. ..+..+..+... -.++++++++|+++... +. ..+...+
T Consensus 262 ----L----l~ky-------vG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 262 ----L----LNKY-------VG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ----h----cccc-------cc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 1000 00 111112222221 13578999999996421 11 1121112
Q ss_pred CC-CCCCCcEEEEEcCccccc-----ccCCCCcceEcCCCCHHHHHHHHHHhhCC
Q 041248 284 SG-PKNTTSKVVFTTRFVDVC-----GSMEADKKFQVACLSEEDAWELFRKKVGE 332 (813)
Q Consensus 284 ~~-~~~~~s~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 332 (813)
.. ....+..||.||...... +.-.-+..|+++..+.++..++|..+...
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 00 111234455566544331 11123456899999999999999998753
No 163
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.0016 Score=74.12 Aligned_cols=189 Identities=15% Similarity=0.102 Sum_probs=104.2
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+..++.+.+++..+. ...+.++|+.|+||||+|+.+.+..... ...+ ..+++.-...+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~-~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL-NPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCC-------CCCCCccHHHHHHhcCCC
Confidence 468999999999999988654 4567789999999999999998765211 1000 011111122222222111
Q ss_pred CCCCccC---CCCHHHHHHHHHHH-----hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-EEcCccccccc
Q 041248 237 LVDDSWK---SKSVEEKALDIFRS-----LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV-FTTRFVDVCGS 305 (813)
Q Consensus 237 ~~~~~~~---~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il-vTtR~~~v~~~ 305 (813)
......+ ....+ .+..+... ..+++-++|+|++... ..+..+...+ ........+| .||....+...
T Consensus 88 ~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtL-Eepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTL-EEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHh-cCCCCCeEEEEEeCChhhCcHH
Confidence 1000000 01111 11222222 2356668899999743 2344443333 2222334444 45554433221
Q ss_pred -CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 306 -MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 306 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
......+++.+++.++....+...+......-+ .+.+..|++.++|.+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 233467889999999999988887654332222 356778889999877544
No 164
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.56 E-value=0.0027 Score=62.41 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=38.5
Q ss_pred CcccchhHHHHHHHHHH----hcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCL----VEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.++|.+.+++.|.+-. ......-+.+||..|+|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 57899999998887643 33456678899999999999999999987
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.49 E-value=0.0014 Score=62.44 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=40.7
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++||-++.++++.-...+++.+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 4689999999998877778888999999999999999998888876
No 166
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0014 Score=71.29 Aligned_cols=170 Identities=21% Similarity=0.234 Sum_probs=95.7
Q ss_pred cccchhHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHH
Q 041248 159 TIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEK 226 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 226 (813)
.+=|.++.+.++.+.+.. ...+=|.++|++|+|||.||++++++. .-.| +.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch-----
Confidence 466888888888887642 245678899999999999999999987 2233 333222
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--------cccc-----cc---ccCCCCCCCCC
Q 041248 227 IQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--------VDLT-----KM---GIPLSGPKNTT 290 (813)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~~~-----~~---~~~l~~~~~~~ 290 (813)
+|.... .+.+++..-..+.+....-++++++|+++.. .+.+ ++ ..-+......|
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 122211 2233333334444455678999999999632 0110 11 11110111112
Q ss_pred cEEEE---EcCcccccccC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc
Q 041248 291 SKVVF---TTRFVDVCGSM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL 355 (813)
Q Consensus 291 s~ilv---TtR~~~v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (813)
-.||| |+|...+-..+ .-.+.|.|.--++..-.+++.....+-....+-+ .++|++.+-|.
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 22332 66655552222 2346778887777777777777665433222222 34566666554
No 167
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.49 E-value=0.00053 Score=82.09 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=88.0
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccC--CCC-CCEEEEEEecCccCHHHHHHHHHHHc
Q 041248 159 TIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLES--PTS-FDCVIWAVVSKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l 235 (813)
.++||+++++++++.|......-+.++|++|+|||++|..++...... ... -+..+|. + +...+ +.
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----~a-- 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----LA-- 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH----hc--
Confidence 479999999999999987666677899999999999999998876211 111 1234442 1 11111 11
Q ss_pred CCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCcc---------cccccccCCCCCCCCCcEEEEEcCcccccc-
Q 041248 236 GLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWERV---------DLTKMGIPLSGPKNTTSKVVFTTRFVDVCG- 304 (813)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~- 304 (813)
+.. -....++.+..+.+.+ ..++.+|++|++.... +...+..+. .. ...-++|.+|.......
T Consensus 249 g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~-l~-rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPA-LA-RGELQCIGATTLDEYRKH 322 (821)
T ss_pred cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHH-Hh-CCCcEEEEeCCHHHHHHH
Confidence 100 0112333444444333 3568999999995311 111222121 11 12245555555443211
Q ss_pred ------cCCCCcceEcCCCCHHHHHHHHHHh
Q 041248 305 ------SMEADKKFQVACLSEEDAWELFRKK 329 (813)
Q Consensus 305 ------~~~~~~~~~l~~L~~~~~~~Lf~~~ 329 (813)
.......+.++..+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1123356788999999988887754
No 168
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0027 Score=67.00 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=58.0
Q ss_pred CCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCccc-cc-ccCCCCcceEcCCCCHHHHHHHHHHhhCCCcc
Q 041248 260 EKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVD-VC-GSMEADKKFQVACLSEEDAWELFRKKVGEETL 335 (813)
Q Consensus 260 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~-v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 335 (813)
+++-++|+|+++.. .....+...+ -....++.+|+||.+.. +. ...+....+.+.+++.+++.+.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~L-EEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSL-EEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHH-hCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC-
Confidence 44455677999753 2333333333 22224566666666543 33 2233456799999999999999987642111
Q ss_pred CCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 336 ESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 336 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
.+.+..++..++|.|.....+
T Consensus 183 ------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 234567889999999765444
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.47 E-value=0.0033 Score=71.10 Aligned_cols=172 Identities=17% Similarity=0.176 Sum_probs=93.3
Q ss_pred CcccchhHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.+++|-+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 357888877666655443 1 124468899999999999999999875 2222 22221 1
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc------------ccc----ccccCCCC-CCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV------------DLT----KMGIPLSG-PKN 288 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~~~----~~~~~l~~-~~~ 288 (813)
++... . ...........+.......+.+|++||++... ... .+...+.. ...
T Consensus 123 ~~~~~----~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVEM----F-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHH----H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 11111 0 01112222233333344677899999995421 011 11111100 122
Q ss_pred CCcEEEEEcCcccc-----cccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 289 TTSKVVFTTRFVDV-----CGSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 289 ~~s~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
.+..||.||..... .+.-.-...++++..+.++-.++|...+.......+ .....+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence 34455666654432 111123467889999999999999887754332211 22457888887743
No 170
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.005 Score=60.28 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=103.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe-cCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHH
Q 041248 176 EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVV-SKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDI 254 (813)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 254 (813)
.++.+++.++|.-|+|||.+++.+.... .. +.++-+.+ .+..+...+...|...+............++....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~----~~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASL----NE-DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc----CC-CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 3566799999999999999999655544 11 11222333 344567788888888887522111111223333444
Q ss_pred HHHh-cCCc-EEEEEecccCc--ccccccccCCC--CCCCCCcEEEEEcCcccccc--------cC--CCCcceEcCCCC
Q 041248 255 FRSL-REKR-FVLLLDDIWER--VDLTKMGIPLS--GPKNTTSKVVFTTRFVDVCG--------SM--EADKKFQVACLS 318 (813)
Q Consensus 255 ~~~l-~~k~-~LlVlDdv~~~--~~~~~~~~~l~--~~~~~~s~ilvTtR~~~v~~--------~~--~~~~~~~l~~L~ 318 (813)
.... +++| ..+++||..+. ..++.++.... ......-+|+..-. +.+.. .. ...-.|++.|++
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcC
Confidence 4443 4666 89999998642 22222211110 11111112332211 11111 00 111238999999
Q ss_pred HHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHH
Q 041248 319 EEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGR 364 (813)
Q Consensus 319 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 364 (813)
.++...++..+........+---.+....|.....|.|.+|..++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999888876543111111235678899999999999987764
No 171
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=2.1e-05 Score=68.44 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=68.9
Q ss_pred CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCC
Q 041248 536 VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVN 615 (813)
Q Consensus 536 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~ 615 (813)
......|...+++ ++.+.++|+.+..+++.++.|+|++| .+..+|..+..++.|+.|+++.|.+...|.-+..|.+
T Consensus 49 l~~~~el~~i~ls-~N~fk~fp~kft~kf~t~t~lNl~~n---eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISLS-DNGFKKFPKKFTIKFPTATTLNLANN---EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred HhCCceEEEEecc-cchhhhCCHHHhhccchhhhhhcchh---hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHh
Confidence 3455667777777 56677788776677777888888888 7778887777888888888888888888877777888
Q ss_pred CcEEeccCcccccccchh
Q 041248 616 LKCLNLRWTRMLNKIPRL 633 (813)
Q Consensus 616 L~~L~l~~~~~l~~lp~~ 633 (813)
|-+|+..+|. ...+|-.
T Consensus 125 l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 125 LDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhcCCCCc-cccCcHH
Confidence 8888777663 4555543
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.39 E-value=0.0011 Score=79.27 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=41.2
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++||+.++.++++.|.......+.++|.+|+|||++|+.++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999987777778899999999999999999876
No 173
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.37 E-value=0.0039 Score=66.17 Aligned_cols=200 Identities=19% Similarity=0.211 Sum_probs=127.5
Q ss_pred hhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCEEEEEEecCc---cCHHHHHHHHHHHcCCC
Q 041248 163 LQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLL-THINNKFLESPTSFDCVIWAVVSKD---LRLEKIQEDIGKKIGLV 238 (813)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 238 (813)
|.+.+++|..||.+..-..|.|.|+-|+||+.|+ .++.++. +.+..+.+.+- .+-..+...++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999888889999999999999999 7776654 12566655332 23455666666666532
Q ss_pred C-----------------------CccCCCCHHHHHHHH-------HH-------------------Hhc---CCcEEEE
Q 041248 239 D-----------------------DSWKSKSVEEKALDI-------FR-------------------SLR---EKRFVLL 266 (813)
Q Consensus 239 ~-----------------------~~~~~~~~~~~~~~l-------~~-------------------~l~---~k~~LlV 266 (813)
. .++......++...+ ++ ++. .++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 111222222222221 11 111 1267899
Q ss_pred EecccCc-----------ccccccccCCCCCCCCCcEEEEEcCcccccccC------CCCcceEcCCCCHHHHHHHHHHh
Q 041248 267 LDDIWER-----------VDLTKMGIPLSGPKNTTSKVVFTTRFVDVCGSM------EADKKFQVACLSEEDAWELFRKK 329 (813)
Q Consensus 267 lDdv~~~-----------~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~~~------~~~~~~~l~~L~~~~~~~Lf~~~ 329 (813)
+|++... .+|... + -..+-.+||++|-+....... ...+.+.|.-.+++.|..+...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---L--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---H--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9998532 233322 1 234556899988876553322 24467889999999999999998
Q ss_pred hCCCccC------------CC-----hhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCHHH
Q 041248 330 VGEETLE------------SD-----HDIVELAQTVAKECGGLPLALITIGRAMAFKKTAEE 374 (813)
Q Consensus 330 ~~~~~~~------------~~-----~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~ 374 (813)
....... .+ ..........++.+||--.-+..+++.++...++++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 8653100 00 123455677888999999999999999887766543
No 174
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.37 E-value=0.0023 Score=69.55 Aligned_cols=164 Identities=20% Similarity=0.159 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCcc
Q 041248 163 LQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSW 242 (813)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 242 (813)
|..-..++.+.+..... ++.|.|+-++||||+++.+.... ... .+++..........-+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~------------- 81 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELL------------- 81 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHH-------------
Confidence 34445555555544333 99999999999999997776665 122 45554322211000001
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCcccccc-----c-CCCCcceEcCC
Q 041248 243 KSKSVEEKALDIFRSLREKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVCG-----S-MEADKKFQVAC 316 (813)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~-----~-~~~~~~~~l~~ 316 (813)
+....+...-..++..++||.|....+|......+ .+.++. +|++|+-+..... . .+....+++.|
T Consensus 82 ------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l-~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 82 ------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYL-YDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred ------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHH-Hccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 11111111112277899999999999998877666 555555 8898888765421 1 13456789999
Q ss_pred CCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 317 LSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 317 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
|+..|-..+-...+ ... .. ...-+-.-..||.|-++..
T Consensus 154 lSF~Efl~~~~~~~-----~~~-~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 154 LSFREFLKLKGEEI-----EPS-KL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred CCHHHHHhhccccc-----chh-HH-HHHHHHHHHhCCCcHHHhC
Confidence 99999876644110 000 11 1122223357999988743
No 175
>PRK08118 topology modulation protein; Reviewed
Probab=97.36 E-value=0.00045 Score=65.42 Aligned_cols=36 Identities=33% Similarity=0.561 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEE
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIW 215 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~w 215 (813)
+.|.|+|++|+||||||+.+++...-...+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987323356777776
No 176
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.34 E-value=0.007 Score=72.17 Aligned_cols=46 Identities=30% Similarity=0.344 Sum_probs=38.0
Q ss_pred CcccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999998886642 134589999999999999999999986
No 177
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.34 E-value=0.00087 Score=80.52 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=87.3
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CCEEEEEEecCccCHHHHHHHHHHH
Q 041248 159 TIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTS----FDCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
.++||+.++.++++.|.......+.++|.+|+|||++|..++.... .... ....+|.- ++..+ ...
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~~p~~l~~~~~~~l-----~~~~l----~a~ 243 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV-NGDVPESLKNKRLLAL-----DMGAL----IAG 243 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh-ccCCchhhcCCeEEEe-----eHHHH----hhc
Confidence 4799999999999999876667778999999999999999988762 1111 12233321 11111 100
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHhc--CCcEEEEEecccCcc---------cccccccCCCCCCCCC-cEEEEEcCcccc
Q 041248 235 IGLVDDSWKSKSVEEKALDIFRSLR--EKRFVLLLDDIWERV---------DLTKMGIPLSGPKNTT-SKVVFTTRFVDV 302 (813)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~-s~ilvTtR~~~v 302 (813)
.. .....+..+..+...+. +++.+|++|++.... +...+..+. ...| -++|-+|.....
T Consensus 244 ~~------~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~---l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 244 AK------YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA---LARGELHCIGATTLDEY 314 (852)
T ss_pred ch------hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh---hhcCceEEEEeCcHHHH
Confidence 00 01122333334433332 468999999996321 111222222 2222 344544443332
Q ss_pred cc-------cCCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 303 CG-------SMEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 303 ~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
-. .......+.++..+.++...++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 10 11123568899999999999987664
No 178
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00097 Score=77.89 Aligned_cols=155 Identities=19% Similarity=0.308 Sum_probs=88.4
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC---CCEEEEEEecCccCHHHHHHHHHHHc
Q 041248 159 TIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTS---FDCVIWAVVSKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l 235 (813)
.++||+.++.++++.|......-+.++|.+|+|||++|+.++......... .++.+|.. +... ++.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc--
Confidence 579999999999999887655667789999999999999998865211111 23444421 1111 111
Q ss_pred CCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCc----------ccccccccCCCCCCCCCcEEEEEcCcccccc
Q 041248 236 GLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWER----------VDLTKMGIPLSGPKNTTSKVVFTTRFVDVCG 304 (813)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~ 304 (813)
+.. .....+.....+...+ +..+.+|++|++... .+...+..++ .. ...-++|-+|...+...
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~-L~-~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-LS-SGKIRVIGSTTYQEFSN 329 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHH-Hh-CCCeEEEecCChHHHHH
Confidence 000 0112233334443333 346779999999632 1122222222 11 12344554444333211
Q ss_pred -------cCCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 305 -------SMEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 305 -------~~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
.......+.++..+.++..+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 01123578999999999999988754
No 179
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.28 E-value=0.0011 Score=75.38 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=39.2
Q ss_pred CcccchhHHHHHHHHHHhcC-----CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEE-----SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.++.++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999998752 34679999999999999999998865
No 180
>PRK08116 hypothetical protein; Validated
Probab=97.28 E-value=0.00046 Score=70.77 Aligned_cols=101 Identities=22% Similarity=0.246 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR 259 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (813)
..+.++|..|+|||.||..+++... . ....+++++ ..+++..+........ ... ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~-~--~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI-E--KGVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHhc
Confidence 4588999999999999999999872 1 223455654 3445555554443111 111 122334444
Q ss_pred CCcEEEEEeccc--Ccccccc--cccCCCCCCCCCcEEEEEcC
Q 041248 260 EKRFVLLLDDIW--ERVDLTK--MGIPLSGPKNTTSKVVFTTR 298 (813)
Q Consensus 260 ~k~~LlVlDdv~--~~~~~~~--~~~~l~~~~~~~s~ilvTtR 298 (813)
+-. ||||||+. ...+|.. +...+...-..+..+||||.
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 444 89999994 2333322 22112011124556888887
No 181
>PRK10536 hypothetical protein; Provisional
Probab=97.26 E-value=0.0026 Score=63.35 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=40.3
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEE
Q 041248 159 TIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIW 215 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~w 215 (813)
.+.+|......+..++.+. .+|.+.|.+|+|||+||.++..+. -....|+.++-
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI 109 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIV 109 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEE
Confidence 4577888888888888653 599999999999999999988863 11234554443
No 182
>PRK07261 topology modulation protein; Provisional
Probab=97.25 E-value=0.0008 Score=64.06 Aligned_cols=66 Identities=20% Similarity=0.386 Sum_probs=42.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcC
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLRE 260 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 260 (813)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+...+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 58999999999999999998765211224455555211 1223445566666666766
Q ss_pred CcEEEEEeccc
Q 041248 261 KRFVLLLDDIW 271 (813)
Q Consensus 261 k~~LlVlDdv~ 271 (813)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 66 6778764
No 183
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0093 Score=61.16 Aligned_cols=181 Identities=22% Similarity=0.296 Sum_probs=106.7
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 159 TIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.+=|-++++++|.+.+.- +..+=|.+||++|.|||-||++|+++- ...| +.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----
Confidence 355788999999887641 356778999999999999999999976 3333 333221
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc-CCcEEEEEecccCc-------------c---cccccccCCCC-CC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR-EKRFVLLLDDIWER-------------V---DLTKMGIPLSG-PK 287 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-------------~---~~~~~~~~l~~-~~ 287 (813)
++.+.. +| .-..+...+++.-+ ..+.+|.+|.++.. + .+-++...+-. +.
T Consensus 220 ElVqKY---iG---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ELVQKY---IG---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HHHHHH---hc---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 121111 11 11234444555444 46889999988531 0 01112222200 22
Q ss_pred CCCcEEEEEcCccccc-----ccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc----hH
Q 041248 288 NTTSKVVFTTRFVDVC-----GSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP----LA 358 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP----La 358 (813)
....|||..|...++. +.-.-+..|+++.-+.+.-.++|.-++.......+-+++ .+++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHH
Confidence 3467888877655553 222345678888666777777888887765544444444 5667777664 34
Q ss_pred HHHHHHhhc
Q 041248 359 LITIGRAMA 367 (813)
Q Consensus 359 i~~~~~~l~ 367 (813)
+.+=|++++
T Consensus 364 ictEAGm~A 372 (406)
T COG1222 364 ICTEAGMFA 372 (406)
T ss_pred HHHHHhHHH
Confidence 444455543
No 184
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0096 Score=62.27 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCC----------------CCCCEEEEEEecCccCHHHH
Q 041248 165 SQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP----------------TSFDCVIWAVVSKDLRLEKI 227 (813)
Q Consensus 165 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~----------------~~f~~~~wv~~~~~~~~~~~ 227 (813)
...+.+...+..++. ..+.++|+.|+||+++|..++....-.. .|.| ..|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 345666777766554 4688999999999999999887652110 0111 11111000000
Q ss_pred HHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEcCc-
Q 041248 228 QEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-----REKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRF- 299 (813)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~- 299 (813)
+.. ....... +.++.+.+.+ .+++-++|+|+++... .-..+...+ -....++.+|++|.+
T Consensus 86 --------~~k--~~~~I~i-dqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtL-EEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 86 --------GDK--LRTEIVI-EQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTL-EEPSPGRYLWLISAQP 153 (319)
T ss_pred --------ccc--ccccccH-HHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHh-hCCCCCCeEEEEECCh
Confidence 000 0000011 1222333322 3466789999997532 222222222 122235656665554
Q ss_pred cccc-ccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHH
Q 041248 300 VDVC-GSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIG 363 (813)
Q Consensus 300 ~~v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (813)
..+. ...+....+.+.+++.+++.+.+.+. +. + +..+..++..++|.|+....+.
T Consensus 154 ~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 154 ARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 3343 22344567899999999999888764 11 1 1336678999999998765443
No 185
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.17 E-value=0.0013 Score=60.24 Aligned_cols=88 Identities=25% Similarity=0.056 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
...+.|+|++|+||||+++.++.... .....++++..+........... ....... ............+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999872 22233555554443322222111 0000000 01222333333444444
Q ss_pred cCC-cEEEEEecccCc
Q 041248 259 REK-RFVLLLDDIWER 273 (813)
Q Consensus 259 ~~k-~~LlVlDdv~~~ 273 (813)
+.. ..++++|++...
T Consensus 75 ~~~~~~viiiDei~~~ 90 (148)
T smart00382 75 RKLKPDVLILDEITSL 90 (148)
T ss_pred HhcCCCEEEEECCccc
Confidence 443 489999999764
No 186
>CHL00176 ftsH cell division protein; Validated
Probab=97.16 E-value=0.0044 Score=71.14 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=94.8
Q ss_pred CcccchhHHHHHHHHHH---hcC---------CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCL---VEE---------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.++.|.++.++++.+.+ ... ..+-|.++|++|+|||+||+.+++.. ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 45788877666655543 321 24568999999999999999998875 222 2222211
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc------------c----ccccccCCCC-CCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV------------D----LTKMGIPLSG-PKN 288 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~-~~~ 288 (813)
++... . ...........+.......+.+|++||++... . +..+...+.. ...
T Consensus 251 ~f~~~----~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEM----F-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHH----h-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 11100 0 00111222233444456788999999995321 1 1111111100 123
Q ss_pred CCcEEEEEcCcccccc-----cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc
Q 041248 289 TTSKVVFTTRFVDVCG-----SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL 355 (813)
Q Consensus 289 ~~s~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (813)
.+..||.||....... .-.-...+.++..+.++-.++++.++....... ......+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCCC
Confidence 3455666666543211 112346788999999999999988875432111 23456778888773
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.006 Score=65.32 Aligned_cols=145 Identities=22% Similarity=0.213 Sum_probs=88.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHH---
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDI--- 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l--- 254 (813)
+...+.+.|++|+|||+||..++.. ..|..+--++.. + ..+.++......+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe------~---------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPE------D---------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChH------H---------------ccCccHHHHHHHHHHH
Confidence 4567788999999999999999875 456544333211 1 1223333333333
Q ss_pred -HHHhcCCcEEEEEecccCcccccccccC------------C--CCCCCCCcEEEEEcCcccccccCCC----CcceEcC
Q 041248 255 -FRSLREKRFVLLLDDIWERVDLTKMGIP------------L--SGPKNTTSKVVFTTRFVDVCGSMEA----DKKFQVA 315 (813)
Q Consensus 255 -~~~l~~k~~LlVlDdv~~~~~~~~~~~~------------l--~~~~~~~s~ilvTtR~~~v~~~~~~----~~~~~l~ 315 (813)
....+..--.||+||+....+|..++.- + +++.+..--|+-||....+...|+- ...|+++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 3444566679999999766565544322 1 1333344445557777778776652 3578999
Q ss_pred CCCH-HHHHHHHHHhhCCCccCCChhHHHHHHHHHHHh
Q 041248 316 CLSE-EDAWELFRKKVGEETLESDHDIVELAQTVAKEC 352 (813)
Q Consensus 316 ~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 352 (813)
.++. ++..+.+...-. -.+.+.+.++++...+|
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 9987 777777766431 12233445566666666
No 188
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.019 Score=60.10 Aligned_cols=176 Identities=9% Similarity=0.053 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCC----CC
Q 041248 166 QLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLV----DD 240 (813)
Q Consensus 166 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----~~ 240 (813)
.-+.+.+.+..+. ...+.+.|+.|+||+++|+.++....-.. ... ......-...+.+...-... .+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~-~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT-PQG-------DQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC-CCC-------CCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 3455666666554 45777999999999999999887662110 000 00111111111111100000 00
Q ss_pred -ccCCCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEcCcc-ccc-ccCCCCc
Q 041248 241 -SWKSKSVEEKALDIFRSL-----REKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRFV-DVC-GSMEADK 310 (813)
Q Consensus 241 -~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~-~~~~~~~ 310 (813)
.......++ ++.+.+.+ .+++-++|+|+++... ....+...+ -....++.+|++|.+. .+. ...+...
T Consensus 82 ~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtL-EEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 82 IDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTL-EEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHh-cCCCCCeEEEEEECChHhCchHHHhhce
Confidence 000111222 22232322 3566688899997532 233333333 2223455666555543 443 2234467
Q ss_pred ceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 311 KFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 311 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
.+.+.++++++..+.+....... ...+...+..++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 89999999999999998764221 123567788899999644
No 189
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.09 E-value=0.0092 Score=70.50 Aligned_cols=159 Identities=15% Similarity=0.146 Sum_probs=85.6
Q ss_pred CCcccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHH
Q 041248 157 EPTIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQED 230 (813)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (813)
+...+|.++.+++|.+++.. ....++.++|++|+||||+|+.++... ...|-. +..+...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---EEcCCCCCHHHhccc
Confidence 34579999999999988862 245689999999999999999999876 233322 223333333222111
Q ss_pred HHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc------ccccccCCC--------------CCCCCC
Q 041248 231 IGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD------LTKMGIPLS--------------GPKNTT 290 (813)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~l~--------------~~~~~~ 290 (813)
-.... +.........+...- ...-+++||.++.... ...+...+. +..-.+
T Consensus 395 ~~~~~--------g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYI--------GSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccC--------CCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 10011 111112222232222 2334788999963211 111111110 001123
Q ss_pred cEEEEEcCccccccc-CCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 291 SKVVFTTRFVDVCGS-MEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 291 s~ilvTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
.-+|.|+.+..+... .+....+++.++++++-.++..++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 344456644333111 1233578899999999888887775
No 190
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0072 Score=67.50 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=90.1
Q ss_pred CcccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDI 231 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (813)
.+-+|-++.+++|++.|.- -..++++++|++|+|||+|++.++... ...|- -+.++...+..++-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkfv---R~sLGGvrDEAEIR--- 393 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFV---RISLGGVRDEAEIR--- 393 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEE---EEecCccccHHHhc---
Confidence 3459999999999998852 245799999999999999999999987 34442 23344443433321
Q ss_pred HHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc---------cccccccCCC---------CCCCCCcEE
Q 041248 232 GKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV---------DLTKMGIPLS---------GPKNTTSKV 293 (813)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~l~---------~~~~~~s~i 293 (813)
.+.....+.-+...++.+++. ..+.-+++||.++... .+-++..|-+ .-.-.=|.|
T Consensus 394 -----GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 394 -----GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred -----cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 111111111112222222222 3456788999986321 1111111110 000122444
Q ss_pred E-EEcCc-cc-c-cccCCCCcceEcCCCCHHHHHHHHHHhhC
Q 041248 294 V-FTTRF-VD-V-CGSMEADKKFQVACLSEEDAWELFRKKVG 331 (813)
Q Consensus 294 l-vTtR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 331 (813)
+ |||-| -+ + +..+.....|++.+.+++|-.++-+++.-
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 4 44433 22 2 22334557899999999999999888863
No 191
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.08 E-value=0.0013 Score=59.70 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041248 182 IGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~ 203 (813)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 192
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.08 E-value=7.7e-05 Score=65.05 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=77.3
Q ss_pred ceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEE
Q 041248 519 NVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLL 596 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L 596 (813)
.+..+++++|.+..+|. ...++.+++|++. ++.+.++|.. +..++.||.|+++.| .+...|..|..|.+|-+|
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lNl~~N---~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLNLRFN---PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcccccC---ccccchHHHHHHHhHHHh
Confidence 56778899999988765 3677899999999 8889999999 899999999999999 888999999999999999
Q ss_pred eecCCCCcccchhh
Q 041248 597 DISHAGIRELPEEL 610 (813)
Q Consensus 597 ~l~~~~i~~lp~~~ 610 (813)
+..++.+..+|-..
T Consensus 129 ds~~na~~eid~dl 142 (177)
T KOG4579|consen 129 DSPENARAEIDVDL 142 (177)
T ss_pred cCCCCccccCcHHH
Confidence 99999988888764
No 193
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.07 E-value=0.0016 Score=64.53 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVV 218 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 218 (813)
-.++|+|..|+|||||+..+.... ...|.++++++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 467899999999999999998876 578888877754
No 194
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.013 Score=62.29 Aligned_cols=161 Identities=7% Similarity=0.008 Sum_probs=83.4
Q ss_pred cccc-hhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 159 TIVG-LQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 159 ~~vG-r~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
.++| -+..++.+...+..++ .....++|+.|+||||+|+.+.+..... ...... ....-...+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~-~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL-ERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCC-------CCCcCHHHHHHhcCCC
Confidence 3566 6667778888877665 4566899999999999999998775211 100000 0000011111110000
Q ss_pred C----CCCccCCCCHHHHHHHHHHH-----hcCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEcCcc-cccc
Q 041248 237 L----VDDSWKSKSVEEKALDIFRS-----LREKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRFV-DVCG 304 (813)
Q Consensus 237 ~----~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~~ 304 (813)
. ..........++. ..+.+. ..+.+-++|+|++.... ....+...+ -....++.+|++|.+. .+..
T Consensus 78 pD~~~i~~~~~~i~id~i-r~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~L-EEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQI-RYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFL-EEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCEEEeccccccCCHHHH-HHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHh-cCCCCCceEEEEeCChHhCcH
Confidence 0 0000001112222 122222 23455678999986432 233333333 2233456666666543 3322
Q ss_pred -cCCCCcceEcCCCCHHHHHHHHHHh
Q 041248 305 -SMEADKKFQVACLSEEDAWELFRKK 329 (813)
Q Consensus 305 -~~~~~~~~~l~~L~~~~~~~Lf~~~ 329 (813)
..+....+++.++++++..+.+.+.
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2234678999999999998888754
No 195
>PRK12377 putative replication protein; Provisional
Probab=97.02 E-value=0.0019 Score=64.89 Aligned_cols=74 Identities=26% Similarity=0.294 Sum_probs=44.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
+...+.++|.+|+|||+||.++++... .....++++++ .++...+-..... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchHH----HHHHH
Confidence 346889999999999999999999872 22233566644 3444444433211 11111 22222
Q ss_pred hcCCcEEEEEeccc
Q 041248 258 LREKRFVLLLDDIW 271 (813)
Q Consensus 258 l~~k~~LlVlDdv~ 271 (813)
+ .+.-||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 345689999994
No 196
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.00081 Score=62.98 Aligned_cols=104 Identities=19% Similarity=0.294 Sum_probs=68.9
Q ss_pred CcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhc-CCCCCcEEeccCccccccc---chhhhcCCCC
Q 041248 565 PSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELK-LLVNLKCLNLRWTRMLNKI---PRLLISNSSW 640 (813)
Q Consensus 565 ~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~~l~~l---p~~~i~~L~~ 640 (813)
.+.-.+||++| .+..++ .+..+..|.+|.+..|.|+.+-..+. .+++|..|.+.+| .+..+ .+ +..|++
T Consensus 42 d~~d~iDLtdN---dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~p--La~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDN---DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDP--LASCPK 114 (233)
T ss_pred cccceeccccc---chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcch--hccCCc
Confidence 34567888888 666654 56677888888888888887765554 4466888888877 34433 33 567788
Q ss_pred CceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEE
Q 041248 641 LRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTL 687 (813)
Q Consensus 641 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 687 (813)
|++|.+.+|..+... ..-.--+..+++|++|++..
T Consensus 115 L~~Ltll~Npv~~k~------------~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKK------------NYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cceeeecCCchhccc------------CceeEEEEecCcceEeehhh
Confidence 888888777665432 11112256677888887663
No 197
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.97 E-value=0.033 Score=62.19 Aligned_cols=200 Identities=16% Similarity=0.108 Sum_probs=122.0
Q ss_pred CcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCCCEEEEEEecCccCHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLE-----SPTSFDCVIWAVVSKDLRLEKI 227 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~-----~~~~f~~~~wv~~~~~~~~~~~ 227 (813)
..+-+|+.+..+|.+++.. +....+-|.|.+|+|||..+..|.+.... ....|+ .+.|+...-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3467899999998888753 23458999999999999999999886521 123343 344555556679999
Q ss_pred HHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc-----CCcEEEEEecccCccc--ccccccCCCCCCCCCcEEEEEcCc-
Q 041248 228 QEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR-----EKRFVLLLDDIWERVD--LTKMGIPLSGPKNTTSKVVFTTRF- 299 (813)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~s~ilvTtR~- 299 (813)
+..|..++.... .........+..++. .+..++++|+++.... .+-+...|.++..++||++|-+=.
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999987543 233334444444443 4568888898853211 111122232455667776654321
Q ss_pred -cc---------ccccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHH
Q 041248 300 -VD---------VCGSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGR 364 (813)
Q Consensus 300 -~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 364 (813)
.+ ++..+ ....+...|.+.++-.++...+..+...-.....+=++++|+...|..-.|+.+.-+
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 11 11111 234677888888888888887775543222233444566666666666555555433
No 198
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.009 Score=66.08 Aligned_cols=170 Identities=17% Similarity=0.186 Sum_probs=92.6
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 159 TIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
++=|-++.+.+|-+.+.- ...+-|..+|++|+|||++|+++++.. +..|= .+..+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFl-----svkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFL-----SVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCee-----eccCH----
Confidence 444466666666554431 356788999999999999999999986 44542 22221
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc-------------ccccccCCCCCCCCCcE
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD-------------LTKMGIPLSGPKNTTSK 292 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~s~ 292 (813)
+++.. +.+.++..+...+.+.=+--+.++.||.++.... +..+...+ ........
T Consensus 503 EL~sk-----------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEm-DG~e~~k~ 570 (693)
T KOG0730|consen 503 ELFSK-----------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEM-DGLEALKN 570 (693)
T ss_pred HHHHH-----------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHc-ccccccCc
Confidence 11110 1122333333333334345678888998864211 11121222 11122223
Q ss_pred EEE---EcCccccc-ccC---CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 293 VVF---TTRFVDVC-GSM---EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 293 ilv---TtR~~~v~-~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
|+| |-|...+- ..+ ..+..+.++.-+.+.-.++|+.++.......+-+++ +|++++.|.-
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~----~La~~T~g~S 637 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLE----ELAQATEGYS 637 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHH----HHHHHhccCC
Confidence 333 55544431 112 245678888888888899999998766544443444 4555555443
No 199
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0046 Score=68.08 Aligned_cols=188 Identities=14% Similarity=0.142 Sum_probs=108.7
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
++++|-+.-...|...+..+. ..-....|+-|+||||+|+-++....-... ....++..-...+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~--------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG--------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC--------CCCCcchhhhhhHhhhcCCc
Confidence 457999999999999887654 334567899999999999998887621110 11122233333344433211
Q ss_pred CCCCccC--CCCHHHHHHHHHHHh-----cCCcEEEEEeccc--CcccccccccCCCCCCCCCcEEE-EEcCcccc-ccc
Q 041248 237 LVDDSWK--SKSVEEKALDIFRSL-----REKRFVLLLDDIW--ERVDLTKMGIPLSGPKNTTSKVV-FTTRFVDV-CGS 305 (813)
Q Consensus 237 ~~~~~~~--~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~s~il-vTtR~~~v-~~~ 305 (813)
...-.++ ....-+-++.+.+.. .+|.=+.|+|.|. +...|..+...+.-+ ......| .||-...+ ...
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-P~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-PSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC-ccCeEEEEecCCcCcCchhh
Confidence 0000000 011111222333322 4566688999996 345555554444222 2344444 45555555 334
Q ss_pred CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch
Q 041248 306 MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL 357 (813)
Q Consensus 306 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 357 (813)
.+....|.++.++.++-...+...+..+....++ +....|++..+|...
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~---~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEE---DALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccCH---HHHHHHHHHcCCChh
Confidence 4567889999999999999999988766543332 456667777777543
No 200
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.90 E-value=0.0051 Score=64.79 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=63.5
Q ss_pred HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEecC-ccCHHHHHHHHHHHcCCCCCccCC
Q 041248 168 EQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDC-VIWAVVSK-DLRLEKIQEDIGKKIGLVDDSWKS 244 (813)
Q Consensus 168 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~ 244 (813)
.++++.+.. +.-..+.|+|..|+|||||++.+++... ..+-+. ++|+.+.+ ...+.++++.+...+.....+...
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 446666653 3335679999999999999999988762 223344 46766655 457788888888876643211011
Q ss_pred CC---HHHHHHHHHHHh--cCCcEEEEEeccc
Q 041248 245 KS---VEEKALDIFRSL--REKRFVLLLDDIW 271 (813)
Q Consensus 245 ~~---~~~~~~~l~~~l--~~k~~LlVlDdv~ 271 (813)
.. .......+.+++ .+++++||+|++.
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 00 111111222222 5899999999984
No 201
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.90 E-value=0.0073 Score=67.05 Aligned_cols=173 Identities=18% Similarity=0.115 Sum_probs=91.4
Q ss_pred CcccchhHHHHHHHHHHh---c-------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLV---E-------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKI 227 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~-------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (813)
.++.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.. ...| +-+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 356777766666554221 1 235678999999999999999999986 2222 111111 11
Q ss_pred HHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc--------------ccccccCCCCCCCCCcEE
Q 041248 228 QEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD--------------LTKMGIPLSGPKNTTSKV 293 (813)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~~~l~~~~~~~s~i 293 (813)
.. . ..+.+...+...+...-...+++|++|+++.... ...+...+ .....+.-|
T Consensus 296 ~~----~-------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l-~~~~~~V~v 363 (489)
T CHL00195 296 FG----G-------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWL-SEKKSPVFV 363 (489)
T ss_pred cc----c-------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHH-hcCCCceEE
Confidence 00 0 0111222222222222345789999999963210 00111111 112233445
Q ss_pred EEEcCcccc-----cccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 294 VFTTRFVDV-----CGSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 294 lvTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
|.||.+... .+.-.-+..+.++.-+.++-.++|..+.......... ......+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 557764432 1111345678888889999999999887553211111 122456777776654
No 202
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.87 E-value=0.0081 Score=56.55 Aligned_cols=137 Identities=16% Similarity=0.133 Sum_probs=70.4
Q ss_pred chhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCC-----------------CCCEEEEEEecCc--
Q 041248 162 GLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPT-----------------SFDCVIWAVVSKD-- 221 (813)
Q Consensus 162 Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-----------------~f~~~~wv~~~~~-- 221 (813)
|-+...+.+.+.+..+.. ..+.++|+.|+||+++|..+++..-.... ...-..|+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 456677778778777654 46899999999999999998877621111 1112233322221
Q ss_pred -cCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcC
Q 041248 222 -LRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTR 298 (813)
Q Consensus 222 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR 298 (813)
...+++. ++...+.... ..+++=++|+||++.. .....+...+ -....++.+|++|+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~L-Eepp~~~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTL-EEPPENTYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHH-HSTTTTEEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHh-cCCCCCEEEEEEEC
Confidence 1222222 3333332211 1245678999999753 2333333333 23345788888887
Q ss_pred cccc-c-ccCCCCcceEcCCCC
Q 041248 299 FVDV-C-GSMEADKKFQVACLS 318 (813)
Q Consensus 299 ~~~v-~-~~~~~~~~~~l~~L~ 318 (813)
+..- . ...+....+.+.+++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 6542 1 222334456666553
No 203
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.81 E-value=0.00034 Score=79.38 Aligned_cols=246 Identities=21% Similarity=0.208 Sum_probs=130.7
Q ss_pred CCCCceeEEEeeecccccccc-chhhcCCCcccEEEeccC-Ccccccc--cCccccCCCCCCEEeecCCC-Cccc--chh
Q 041248 537 PTCPHLLTLFLDFNYKLEMIT-DGFFQCMPSLKVLKMSNC-GHVKVLK--LPFGMSKLGSLQLLDISHAG-IREL--PEE 609 (813)
Q Consensus 537 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~-~~~~~~~--lp~~i~~L~~L~~L~l~~~~-i~~l--p~~ 609 (813)
..++.|+.|.+.++..+.... ..+...+++|+.|+++++ ....... .+.....+.+|+.|+++++. ++.. ..-
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347888888888776665532 233677889999999873 1001111 12234456788888888885 5432 111
Q ss_pred hcCCCCCcEEeccCcccccccc-hhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEc
Q 041248 610 LKLLVNLKCLNLRWTRMLNKIP-RLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLR 688 (813)
Q Consensus 610 ~~~l~~L~~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 688 (813)
...+++|++|.+.+|..+.... ..+..++++|++|+++.+.... +........++++|+.|.+...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-------------d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-------------DSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-------------HHHHHHHHHhCcchhhhhhhhc
Confidence 2237789998888785432211 1124567889999888543221 1112222444566655543322
Q ss_pred c-hhhHH--hhhcchhhh-hcceeeeecccCCcccccccccccccccc-eeeecccCccceeeecccccCCCCCCccccc
Q 041248 689 S-YDALQ--FFLSSNKLK-SCIRSLFLNKLGGTKSIHATAFSDLKHLN-ELCIRSAVELEELKVDYTEIAPKRSEPFVFR 763 (813)
Q Consensus 689 ~-~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~~~l~~~~l~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~ 763 (813)
. +..+. .+....... ..+..+.+..|..++.+.+.... ..... .+.+.+|+.+. ....... ..+.
T Consensus 332 ~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~--------~~~~ 401 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRL--------CRSD 401 (482)
T ss_pred CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHh--------ccCC
Confidence 1 11111 111111111 13445555555555555443222 22222 45556666552 1111111 1233
Q ss_pred CcceEeeccCcCCCccc--chhc-CCCCceEeeecCchhhhhhcc
Q 041248 764 SLHRVTMERCHKLKDLT--FLVC-APSLKSLSLYGCNAMEEIISV 805 (813)
Q Consensus 764 ~L~~L~l~~c~~l~~l~--~l~~-l~~L~~L~l~~c~~l~~i~~~ 805 (813)
.|+.|++..|...+.-. .... ..+++.+++.+|+.+......
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 38999999988665533 2222 788999999999998876643
No 204
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.045 Score=57.24 Aligned_cols=175 Identities=13% Similarity=0.019 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCC----CC
Q 041248 166 QLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLV----DD 240 (813)
Q Consensus 166 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----~~ 240 (813)
..+++.+.+..++ ...+.+.|+.|+||+++|+.++....-.... + .....-...+.+...-... .+
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~--------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-S--------EACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-C--------CCCCCCHHHHHHHcCCCCCEEEEec
Confidence 3455666665554 4578899999999999999987765211100 0 0000001111111100000 00
Q ss_pred c--cCCCCHHHHHHHHHHHh-----cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCc-cccc-ccCCCC
Q 041248 241 S--WKSKSVEEKALDIFRSL-----REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRF-VDVC-GSMEAD 309 (813)
Q Consensus 241 ~--~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~-~~v~-~~~~~~ 309 (813)
. ......++. +.+.+.+ .+++-++|+|+++.. .....+...+ -....++.+|++|.+ ..+. ...+..
T Consensus 82 ~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtL-EEPp~~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 82 EKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTL-EEPAPNCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred CcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHh-cCCCCCeEEEEEECChhhChHHHHhcc
Confidence 0 001122222 2233332 345568889999753 2233333333 222344555555544 4443 333456
Q ss_pred cceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 310 KKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
..+.+.+++++++.+.+..... + .+..++..++|.|+....+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~------~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQGI------T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcCC------c-----hHHHHHHHcCCCHHHHHHH
Confidence 7899999999999998876421 1 1346789999999877554
No 205
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.79 E-value=0.0035 Score=60.65 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc--cC----HHH-------HH
Q 041248 162 GLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD--LR----LEK-------IQ 228 (813)
Q Consensus 162 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~----~~~-------~~ 228 (813)
.+..+....++.+. ...++.+.|++|+|||.||.+.+-+. -..+.|+.++++...-+ .+ +-+ ..
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34555666677776 45699999999999999999887765 33478888887752111 00 000 11
Q ss_pred HHHHHHcCCCCCccCCCCHHHHHHH------HHHHhcCC---cEEEEEecccC--cccccccccCCCCCCCCCcEEEEEc
Q 041248 229 EDIGKKIGLVDDSWKSKSVEEKALD------IFRSLREK---RFVLLLDDIWE--RVDLTKMGIPLSGPKNTTSKVVFTT 297 (813)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ilvTt 297 (813)
..+...+..-. .....+..... -..+++|+ ..++|+|++.+ ..++..+. ...+.+||||++-
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il----TR~g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL----TRIGEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH----TTB-TT-EEEEEE
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH----cccCCCcEEEEec
Confidence 11122221100 11122222211 01334554 46999999965 34565553 4457899999987
Q ss_pred Cc
Q 041248 298 RF 299 (813)
Q Consensus 298 R~ 299 (813)
-.
T Consensus 154 D~ 155 (205)
T PF02562_consen 154 DP 155 (205)
T ss_dssp --
T ss_pred Cc
Confidence 54
No 206
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.036 Score=58.75 Aligned_cols=177 Identities=12% Similarity=0.026 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCC----CC
Q 041248 166 QLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLV----DD 240 (813)
Q Consensus 166 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----~~ 240 (813)
.-+++.+.+..++ ...+.+.|+.|+||+++|..++....-.. ..+. .....-...+.+...--.. .+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~-~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ-PQGH-------KSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC-CCCC-------CCCCCCHHHHHHHcCCCCCEEEEec
Confidence 3456666666554 45778999999999999999877652100 0000 0000001111111000000 00
Q ss_pred cc--CCCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEEcCc-cccc-ccCCCC
Q 041248 241 SW--KSKSVEEKALDIFRSL-----REKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRF-VDVC-GSMEAD 309 (813)
Q Consensus 241 ~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~-~~v~-~~~~~~ 309 (813)
.. ..-..++ ++.+.+.+ .+++-++|+|+++... ....+...+ -....++.+|++|.+ ..+. ...+..
T Consensus 82 ~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtL-EEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 82 EKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTL-EEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred ccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHh-cCCCCCeEEEEEECChhhChHHHHhcc
Confidence 00 0011222 22233322 3566789999997532 223333233 222345555555554 4443 223445
Q ss_pred cceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 310 KKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
..+.+.+++++++.+.+.+..+. + .+.+..++..++|.|....
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 67899999999999888764321 1 1336788999999996543
No 207
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.78 E-value=0.009 Score=60.63 Aligned_cols=170 Identities=16% Similarity=0.199 Sum_probs=97.0
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHH-HHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEK-IQEDIG 232 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~i~ 232 (813)
..++|-.++..++.+++.. +....|.|+|+.|.|||+|......+. +..-+..+-|...+....++ .++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4579999999999888864 456788899999999999988877764 22223344455555443322 344555
Q ss_pred HHcCCCCC--ccCCCCHHHHHHHHHHHhcC------CcEEEEEecccCccc------ccccccCCCCCCCCCcEEEEEcC
Q 041248 233 KKIGLVDD--SWKSKSVEEKALDIFRSLRE------KRFVLLLDDIWERVD------LTKMGIPLSGPKNTTSKVVFTTR 298 (813)
Q Consensus 233 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~s~ilvTtR 298 (813)
+++..... .....+..+...++...|+. -++++|+|.++--.. +-.+...-+....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 44432111 11233444555555555542 468889988753110 11111111122345567778999
Q ss_pred cccc-------cccCCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 299 FVDV-------CGSMEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 299 ~~~v-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
-... -+.+..-..+-++.++-++...++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 5432 2222222345566777777777777765
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.77 E-value=0.0084 Score=71.26 Aligned_cols=172 Identities=19% Similarity=0.197 Sum_probs=92.5
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 159 TIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
++.|.+..++++.+.+.- ...+-|.++|++|+|||+||+.+++.. ...| +.++..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~-----i~i~~~---- 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF-----ISINGP---- 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE-----EEEecH----
Confidence 478999999988877631 234678899999999999999999876 2222 222211
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--------c-----ccccccCCCCCCCCCcE
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--------D-----LTKMGIPLSGPKNTTSK 292 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~l~~~~~~~s~ 292 (813)
.+ .... ...........+.......+.+|++|+++... + ...+...+......+..
T Consensus 247 ~i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EI----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HH----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 11 0000 11112222233333445667899999985321 0 11111111011122333
Q ss_pred EEE-EcCccc-ccccC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch
Q 041248 293 VVF-TTRFVD-VCGSM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL 357 (813)
Q Consensus 293 ilv-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 357 (813)
++| ||.... +...+ .-...+.+...+.++-.+++...........+ .....+++.+.|..-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCH
Confidence 444 444322 21111 12346788888888888888866543321111 235678888888653
No 209
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.052 Score=59.93 Aligned_cols=89 Identities=21% Similarity=0.317 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc-cCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD-LRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
...+|+|+|.+|+||||++..+.... ........+..++.... ......+....+.++.... ...+..++...+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-E 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-H
Confidence 34799999999999999999988765 22222234555544221 1122233333344443221 122233333333 3
Q ss_pred HhcCCcEEEEEeccc
Q 041248 257 SLREKRFVLLLDDIW 271 (813)
Q Consensus 257 ~l~~k~~LlVlDdv~ 271 (813)
.+.+ .-+|++|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4477788873
No 210
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.68 E-value=0.01 Score=70.29 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=36.6
Q ss_pred CcccchhHHHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------E--SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578888888888887752 1 23467899999999999999998876
No 211
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.66 E-value=0.03 Score=57.47 Aligned_cols=53 Identities=26% Similarity=0.263 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHH
Q 041248 167 LEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKI 227 (813)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (813)
++++..++.. ...|.+.|++|+|||++|+.++... .. ..+.+++.......++
T Consensus 11 ~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 11 TSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence 3444444443 2466789999999999999998754 22 2344555554444443
No 212
>PRK08181 transposase; Validated
Probab=96.65 E-value=0.0028 Score=64.57 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=45.2
Q ss_pred HHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHH
Q 041248 172 RCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKA 251 (813)
Q Consensus 172 ~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 251 (813)
+|+. ...-+.++|++|+|||.||..+.+... .....++|+. ..++...+..... ........
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHHH
Confidence 4553 335699999999999999999998762 2223345554 3445555533211 11222222
Q ss_pred HHHHHHhcCCcEEEEEeccc
Q 041248 252 LDIFRSLREKRFVLLLDDIW 271 (813)
Q Consensus 252 ~~l~~~l~~k~~LlVlDdv~ 271 (813)
+.+. +.-|||+||+.
T Consensus 163 ----~~l~-~~dLLIIDDlg 177 (269)
T PRK08181 163 ----AKLD-KFDLLILDDLA 177 (269)
T ss_pred ----HHHh-cCCEEEEeccc
Confidence 2222 34499999995
No 213
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.65 E-value=0.045 Score=57.72 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVV 218 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 218 (813)
...+.++|..|+|||.||..+++... ... ..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 37799999999999999999999872 222 34566653
No 214
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.00098 Score=65.27 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=5.4
Q ss_pred CCcccEEEeccC
Q 041248 564 MPSLKVLKMSNC 575 (813)
Q Consensus 564 l~~L~~L~l~~~ 575 (813)
|++|+.|.++.|
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 444444444444
No 215
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.058 Score=62.24 Aligned_cols=104 Identities=21% Similarity=0.328 Sum_probs=64.3
Q ss_pred CcccchhHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQ 228 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 228 (813)
..++|-+..+..+.+.+.. ....+....|+.|||||.||++++... -+.-+..+-++.|+-..-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkH--- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKH--- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHH---
Confidence 4679999999999988863 245667789999999999999998876 1222344444444322222
Q ss_pred HHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcE-EEEEecccC
Q 041248 229 EDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRF-VLLLDDIWE 272 (813)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 272 (813)
.+.+-+|.+ ++..+.+. ...|-+..+.++| ++.||+|..
T Consensus 565 -sVSrLIGaP-PGYVGyee---GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 565 -SVSRLIGAP-PGYVGYEE---GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred -HHHHHhCCC-CCCceecc---ccchhHhhhcCCCeEEEechhhh
Confidence 222333322 22222111 3456667788888 777899964
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.61 E-value=0.0065 Score=59.04 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc-cCHHHHHHHHHHHcCCCCCcc-CCCCHHHHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD-LRLEKIQEDIGKKIGLVDDSW-KSKSVEEKALDIFR 256 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 256 (813)
+++|.++|+.|+||||.+..++... ... -..+..++.... ....+.++..++.++++.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999998888877 222 445666776433 234566778888888653211 12234444443333
Q ss_pred HhcCC-cEEEEEecc
Q 041248 257 SLREK-RFVLLLDDI 270 (813)
Q Consensus 257 ~l~~k-~~LlVlDdv 270 (813)
..+.+ .=++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 33333 346666765
No 217
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.58 E-value=0.009 Score=59.95 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKI 227 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (813)
...++.|+|.+|+|||++|.+++.... .....++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 457999999999999999999988762 234678899877 4554443
No 218
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.58 E-value=0.0019 Score=57.65 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999975
No 219
>PRK06921 hypothetical protein; Provisional
Probab=96.58 E-value=0.0023 Score=65.48 Aligned_cols=39 Identities=31% Similarity=0.340 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVV 218 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 218 (813)
....+.++|..|+|||.||..+++... ......+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 457899999999999999999999872 221234566653
No 220
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.025 Score=63.15 Aligned_cols=158 Identities=14% Similarity=0.171 Sum_probs=89.5
Q ss_pred CcccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDI 231 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (813)
.+-+|.++.+++|++++.- -+.+++..+|++|+|||++|+.++... ...| +-++++.-.+..+|--.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIKGH- 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhccc-
Confidence 3459999999999998852 256899999999999999999999987 2233 22455555555554221
Q ss_pred HHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc---------ccccccccC---------CCCCCCCCcEE
Q 041248 232 GKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER---------VDLTKMGIP---------LSGPKNTTSKV 293 (813)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~~~---------l~~~~~~~s~i 293 (813)
.....+.-+...++.++. .+...-|+.+|.|+.. ..+-++..| +..-.-.=|+|
T Consensus 484 -------RRTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 -------RRTYVGAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred -------ceeeeccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 111111112223333322 2345568888998632 011111111 10111134666
Q ss_pred EEEcCccccc----ccCCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 294 VFTTRFVDVC----GSMEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 294 lvTtR~~~v~----~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
++...-..+. ........|+|.+...+|-.++-.++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 6422211221 111234678999999888888877765
No 221
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.55 E-value=0.0031 Score=66.09 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=40.0
Q ss_pred cccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999864 246889999999999999999998887
No 222
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.00017 Score=70.45 Aligned_cols=102 Identities=24% Similarity=0.164 Sum_probs=72.7
Q ss_pred CCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccch--hhcCCCCC
Q 041248 539 CPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPE--ELKLLVNL 616 (813)
Q Consensus 539 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~--~~~~l~~L 616 (813)
+.+++.|++.| +.+.+|.- ..+|+.|++|.||-| .|+.+. .+..+++|+.|.|+.|.|..+-+ .+.+|++|
T Consensus 18 l~~vkKLNcwg-~~L~DIsi--c~kMp~lEVLsLSvN---kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWG-CGLDDISI--CEKMPLLEVLSLSVN---KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccC-CCccHHHH--HHhcccceeEEeecc---ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 44566677773 34555543 577888999999888 787774 57788888888888887776643 36788888
Q ss_pred cEEeccCcccccccch----hhhcCCCCCceeecc
Q 041248 617 KCLNLRWTRMLNKIPR----LLISNSSWLRVLRMF 647 (813)
Q Consensus 617 ~~L~l~~~~~l~~lp~----~~i~~L~~L~~L~l~ 647 (813)
+.|-|..|+....-+. .++.-|++|+.|+-.
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 9998888876544332 356677888877643
No 223
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.11 Score=55.09 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=54.9
Q ss_pred CCcEEEEEecccCc--ccccccccCCCCCCCCCcEE-EEEcCcccccc-cCCCCcceEcCCCCHHHHHHHHHHhhCCCcc
Q 041248 260 EKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKV-VFTTRFVDVCG-SMEADKKFQVACLSEEDAWELFRKKVGEETL 335 (813)
Q Consensus 260 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~i-lvTtR~~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 335 (813)
+++-++|+|+++.. .....+...+ -...+++.+ ++|++...+.. ..+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtL-EEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTL-EEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHh-cCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-C---
Confidence 45568889999753 2333333333 222344544 45555455542 23445789999999999999997752 1
Q ss_pred CCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 336 ESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 336 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
. + ...++..++|.|.....+
T Consensus 206 -~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C-h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999765444
No 224
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.48 E-value=0.027 Score=67.01 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=94.3
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 159 TIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.+.|.+..++.|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~---- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP---- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH----
Confidence 467888887777766531 134568899999999999999999986 2333 222211
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc---------c-----ccccccCCCC-CCCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV---------D-----LTKMGIPLSG-PKNTT 290 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~-----~~~~~~~l~~-~~~~~ 290 (813)
+ ++.. +.+.+.......+...-...+.+|++|+++... . ...+...+.. ....+
T Consensus 522 ~----l~~~-------~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 E----ILSK-------WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred H----Hhhc-------ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1 1111 011222222222333335678999999985321 0 0111111100 11234
Q ss_pred cEEEEEcCcccccc-c----CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 291 SKVVFTTRFVDVCG-S----MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 291 s~ilvTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
.-||.||....... . -.-...+.++..+.++-.++|..+........+.+ ...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 44555665444321 1 12456788999999999999987665433222222 456777787754
No 225
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.48 E-value=0.00092 Score=65.32 Aligned_cols=38 Identities=29% Similarity=0.345 Sum_probs=18.1
Q ss_pred ccCCCCCCEEeecCCCCc-ccch----hhcCCCCCcEEeccCc
Q 041248 587 MSKLGSLQLLDISHAGIR-ELPE----ELKLLVNLKCLNLRWT 624 (813)
Q Consensus 587 i~~L~~L~~L~l~~~~i~-~lp~----~~~~l~~L~~L~l~~~ 624 (813)
+-+|++|+..+|+.|-+. ..|+ -|++-+.|.||.+++|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 334555555555555332 2222 2444455555555555
No 226
>PRK04296 thymidine kinase; Provisional
Probab=96.46 E-value=0.0037 Score=60.67 Aligned_cols=114 Identities=17% Similarity=0.057 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR 259 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (813)
.++.|+|..|.||||+|..+..+.. .+...++.+.. .++.......++..++...+........+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999888762 22233443421 112122233455666543322112234444444444 33
Q ss_pred CCcEEEEEecccC--cccccccccCCCCCCCCCcEEEEEcCcccc
Q 041248 260 EKRFVLLLDDIWE--RVDLTKMGIPLSGPKNTTSKVVFTTRFVDV 302 (813)
Q Consensus 260 ~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v 302 (813)
++.-+||+|.+.- ..+..++...+ ...|..||+|.++...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCccc
Confidence 4556899999843 22222222221 2457889999987543
No 227
>PRK06526 transposase; Provisional
Probab=96.44 E-value=0.0033 Score=63.73 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...-+.++|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 228
>PRK09183 transposase/IS protein; Provisional
Probab=96.41 E-value=0.0053 Score=62.69 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+.|+|++|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998765
No 229
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.40 E-value=0.0011 Score=75.35 Aligned_cols=237 Identities=19% Similarity=0.173 Sum_probs=123.8
Q ss_pred cceeEEecccc-cccc--c-ccCCCCCceeEEEeeec-ccccccc---chhhcCCCcccEEEeccCCcccccc--cCccc
Q 041248 518 ENVRRLSLMQN-QIEI--L-SEVPTCPHLLTLFLDFN-YKLEMIT---DGFFQCMPSLKVLKMSNCGHVKVLK--LPFGM 587 (813)
Q Consensus 518 ~~~~~l~l~~~-~~~~--l-~~~~~~~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--lp~~i 587 (813)
+.++++.+... .+.. + +....+++|+.|+++++ ......+ ......+++|+.|+++.+.. ++. +....
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--isd~~l~~l~ 265 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL--VTDIGLSALA 265 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc--cCchhHHHHH
Confidence 35555655543 2222 2 33567899999999862 2222222 22355668899999999842 332 22122
Q ss_pred cCCCCCCEEeecCCC-Cc--ccchhhcCCCCCcEEeccCcccccc--cchhhhcCCCCCceeeccccc-cCCCCCCCccc
Q 041248 588 SKLGSLQLLDISHAG-IR--ELPEELKLLVNLKCLNLRWTRMLNK--IPRLLISNSSWLRVLRMFAIG-FENSEEPSEDS 661 (813)
Q Consensus 588 ~~L~~L~~L~l~~~~-i~--~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~ 661 (813)
..+++|++|.+..|. ++ .+-.-...+++|++|++++|..+.. +... ..++++|+.|.+.... +..+....+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 237899999987774 44 2333356788899999999976532 3332 4557777776655322 11110000000
Q ss_pred cccCC-ccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccc-cccccccceeeeccc
Q 041248 662 VLIGG-GEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATA-FSDLKHLNELCIRSA 739 (813)
Q Consensus 662 ~~~~~-~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-l~~l~~L~~L~l~~~ 739 (813)
..... +......+..+++|+.+.+..+.... ....+.+.+|+.++ ..+.. .....+++.|+++.|
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~------------~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSLSYCGISD------------LGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhhhhhhccC------------cchHHHhcCCcccc-hHHHHHhccCCccceEecccC
Confidence 00000 11222233455555555554332110 11145556666663 22111 122233888888888
Q ss_pred CccceeeecccccCCCCCCcccccCcceEeeccCcCCCc
Q 041248 740 VELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKD 778 (813)
Q Consensus 740 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 778 (813)
...+.-...... ..+.++..+.+.+|+....
T Consensus 412 ~~~t~~~l~~~~--------~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 412 RLVTDKGLRCLA--------DSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ccccccchHHHh--------hhhhccccCCccCcccccc
Confidence 766533222211 1267788888888876554
No 230
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.39 E-value=0.01 Score=58.71 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQE 229 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (813)
...++.|+|.+|+|||+++.+++.... .....++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 357999999999999999999887762 3346789998875 55555443
No 231
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.016 Score=62.20 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=35.1
Q ss_pred cccchhH---HHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQS---QLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++-|-|+ ++++|+++|.+. =.+=|.++|++|.|||-||++++...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4566654 567788888752 24668899999999999999999876
No 232
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.13 Score=54.79 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL- 258 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 258 (813)
|--.++|++|.|||+++.++++.. .|+..- ...+... +..+ |++.|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~-----------------------~n~d----Lr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVK-----------------------LDSD----LRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeecccc-----------------------CcHH----HHHHHH
Confidence 456799999999999999999976 344321 1111111 1111 22222
Q ss_pred -cCCcEEEEEecccCcccc-----------c---------ccccCCC--CCCCCCcEEEE-EcCcccc-----cccCCCC
Q 041248 259 -REKRFVLLLDDIWERVDL-----------T---------KMGIPLS--GPKNTTSKVVF-TTRFVDV-----CGSMEAD 309 (813)
Q Consensus 259 -~~k~~LlVlDdv~~~~~~-----------~---------~~~~~l~--~~~~~~s~ilv-TtR~~~v-----~~~~~~~ 309 (813)
...+-+||+.|++-..++ . -+...+- ...+.+-|||| ||-..+- .+.-..+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 134568888888632111 1 0111110 11122346654 7765443 2222345
Q ss_pred cceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhc
Q 041248 310 KKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMA 367 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~ 367 (813)
..|.+.--+.+.-..|+.+..+... + + .+..+|.+...|.-+.=..++..|-
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~-h---~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--D-H---RLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--C-c---chhHHHHHHhhcCccCHHHHHHHHh
Confidence 6788999999999999999887543 1 1 3555666666666555555555443
No 233
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00037 Score=68.23 Aligned_cols=107 Identities=21% Similarity=0.173 Sum_probs=78.7
Q ss_pred CCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccch-hhhcCCCCC
Q 041248 563 CMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPR-LLISNSSWL 641 (813)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L 641 (813)
.+.+.+.|+..|| .+..+. .+..++.|+.|.|+-|+|+.| +.+..|++|+.|+|+.| .+..+.+ .-+.+|++|
T Consensus 17 dl~~vkKLNcwg~---~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGC---GLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCC---CccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence 3567788999999 666553 455788999999999999999 56889999999999998 4666654 125788999
Q ss_pred ceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEE
Q 041248 642 RVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLEL 685 (813)
Q Consensus 642 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 685 (813)
+.|-+..|.|.+-.. ...-..-|.-|+||+.|+-
T Consensus 91 r~LWL~ENPCc~~ag----------~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAG----------QNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHhhccCCcccccc----------hhHHHHHHHHcccchhccC
Confidence 999999888876431 2222334566666666653
No 234
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.35 E-value=0.014 Score=65.20 Aligned_cols=55 Identities=25% Similarity=0.382 Sum_probs=42.8
Q ss_pred cccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 041248 159 TIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVV 218 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 218 (813)
+++--.+.++++..||.+ ...+++.+.|++|+||||.++.+++.. .|+.+=|.+.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCC
Confidence 445556678888888874 235789999999999999999999875 4677778653
No 235
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.32 E-value=0.032 Score=56.03 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc-------cCCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----SFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS-------WKSKS 246 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 246 (813)
...++.|+|.+|+|||+||.+++.... ... .-..++|++....++...+. ++.+..+..... ....+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~-~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ-LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh-cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 457999999999999999999877651 111 11567899887766655443 333332211100 01234
Q ss_pred HHHHHHHHHHHhc----CCcEEEEEeccc
Q 041248 247 VEEKALDIFRSLR----EKRFVLLLDDIW 271 (813)
Q Consensus 247 ~~~~~~~l~~~l~----~k~~LlVlDdv~ 271 (813)
.++....+..... .+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4555444444432 345588889874
No 236
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.31 E-value=0.0029 Score=60.51 Aligned_cols=73 Identities=26% Similarity=0.429 Sum_probs=42.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
...-+.++|..|+|||.||..+.+... ...+ .+.|+. ..+++..+-..- ....... +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEee------cCceeccccccc-------cccchhh----hcCc
Confidence 446799999999999999999998772 2222 355554 345555543221 1112222 2233
Q ss_pred hcCCcEEEEEeccc
Q 041248 258 LREKRFVLLLDDIW 271 (813)
Q Consensus 258 l~~k~~LlVlDdv~ 271 (813)
+.+ -=||||||+-
T Consensus 106 l~~-~dlLilDDlG 118 (178)
T PF01695_consen 106 LKR-VDLLILDDLG 118 (178)
T ss_dssp HHT-SSCEEEETCT
T ss_pred ccc-ccEecccccc
Confidence 332 3478899995
No 237
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.045 Score=62.60 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=98.9
Q ss_pred CcccchhHHHHHH---HHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQV---WRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l---~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.++.|-++.+++| +++|.+. -++=|.++|++|+|||-||++++... . - -|++++...
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g--V-----PF~svSGSE--- 379 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G--V-----PFFSVSGSE--- 379 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C--C-----ceeeechHH---
Confidence 3577877655554 5555541 24568899999999999999999986 2 2 234444321
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCcc-----------------cccccccCCCCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWERV-----------------DLTKMGIPLSGPK 287 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------------~~~~~~~~l~~~~ 287 (813)
..+.+... . ...+..+...- ...+.++.+|+++... .+.++...+ ...
T Consensus 380 -----FvE~~~g~-------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em-Dgf 445 (774)
T KOG0731|consen 380 -----FVEMFVGV-------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM-DGF 445 (774)
T ss_pred -----HHHHhccc-------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh-cCC
Confidence 11111111 0 22233333332 3567888888875321 122222222 111
Q ss_pred CCCc--EEEEEcCcccccc-----cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 288 NTTS--KVVFTTRFVDVCG-----SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 288 ~~~s--~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
.... -++-+|...++.+ .-.-+..+.++.-+.....++|.-++...... .+..++.+ |+...-|.+=|.
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 2222 2333555555422 11245678888888889999999988765422 34456666 899988888654
No 238
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.0023 Score=62.69 Aligned_cols=102 Identities=27% Similarity=0.351 Sum_probs=60.9
Q ss_pred ccceeEEecccccccccccCCCCCceeEEEeeeccc--cccccchhhcCCCcccEEEeccCCcccccc---cCccccCCC
Q 041248 517 WENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYK--LEMITDGFFQCMPSLKVLKMSNCGHVKVLK---LPFGMSKLG 591 (813)
Q Consensus 517 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---lp~~i~~L~ 591 (813)
...+.++++.+..+..+..++.+++|+.|.++.|+. ...++.- ...+++|++|++++| .+.- ++ ....+.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N---ki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN---KIKDLSTLR-PLKELE 116 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC---ccccccccc-hhhhhc
Confidence 346777888777788888889999999999995421 1223222 344588888888888 4432 22 233455
Q ss_pred CCCEEeecCCCCcccch----hhcCCCCCcEEeccC
Q 041248 592 SLQLLDISHAGIRELPE----ELKLLVNLKCLNLRW 623 (813)
Q Consensus 592 ~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~ 623 (813)
+|..|++..|..+.+-. -+.-+++|.+||-..
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 55566666554443321 133344555554433
No 239
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.28 E-value=0.029 Score=55.96 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL 222 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 222 (813)
...++.|.|.+|+||||+|.+++.... ..-..++|++....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCC
Confidence 457899999999999999999988762 233467788765444
No 240
>PRK06696 uridine kinase; Validated
Probab=96.23 E-value=0.007 Score=60.54 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 162 GLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 162 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|++.+++|.+.+.. +...+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467778888887753 467899999999999999999999876
No 241
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.20 E-value=0.011 Score=70.59 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=38.4
Q ss_pred CCcccchhHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 157 EPTIVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.++...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999888742 134578999999999999999988776
No 242
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.20 E-value=0.013 Score=60.99 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS---WKSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (813)
..+++-|+|++|+||||||.++..... ..-..++|++..+.++.. .++.++...+. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457999999999999999999877762 234567788776655442 35555543221 1233455555555
Q ss_pred HHHhc-CCcEEEEEeccc
Q 041248 255 FRSLR-EKRFVLLLDDIW 271 (813)
Q Consensus 255 ~~~l~-~k~~LlVlDdv~ 271 (813)
...++ +..-++|+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456789999984
No 243
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.033 Score=62.06 Aligned_cols=156 Identities=17% Similarity=0.085 Sum_probs=86.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc--CHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL--RLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
..-|.|.|+.|+|||+||+++++... +...-.+.+++++.-. .++.+++.+- ..+..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHHH
Confidence 45788999999999999999999883 4555556666665421 2222222221 12234
Q ss_pred HhcCCcEEEEEecccCc--------cccc-----------ccccCCCCCCCCCcE--EEEEcCccccc-----ccCCCCc
Q 041248 257 SLREKRFVLLLDDIWER--------VDLT-----------KMGIPLSGPKNTTSK--VVFTTRFVDVC-----GSMEADK 310 (813)
Q Consensus 257 ~l~~k~~LlVlDdv~~~--------~~~~-----------~~~~~l~~~~~~~s~--ilvTtR~~~v~-----~~~~~~~ 310 (813)
.+...+-+|||||++-. .+|. ++...+ ...+.+ +|.|.....-. ...-...
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y---~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~ 566 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY---LKRNRKIAVIATGQELQTLNPLLVSPLLFQI 566 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH---HccCcEEEEEEechhhhhcChhhcCccceEE
Confidence 45667889999999521 1111 111111 122333 34444432211 1112234
Q ss_pred ceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc-chHHHH
Q 041248 311 KFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL-PLALIT 361 (813)
Q Consensus 311 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~ 361 (813)
.+.|+.+...+-.++++........ ....+...-++.+|+|. |.-+.+
T Consensus 567 ~~~L~ap~~~~R~~IL~~~~s~~~~---~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 567 VIALPAPAVTRRKEILTTIFSKNLS---DITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred EEecCCcchhHHHHHHHHHHHhhhh---hhhhHHHHHHHHhcCCccchhHHH
Confidence 6788999888888887766543321 11223344488899884 544443
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.18 E-value=0.021 Score=57.97 Aligned_cols=74 Identities=26% Similarity=0.350 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
+..-+.++|.+|+|||.||.++.++.. +..+ .+.+++ ..++..++...... .....++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~~------~~el~~~Lk~~~~~----------~~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFIT------APDLLSKLKAAFDE----------GRLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEEE------HHHHHHHHHHHHhc----------CchHHHHHHH
Confidence 667899999999999999999999982 2333 345553 45566666555432 1111222332
Q ss_pred hcCCcEEEEEeccc
Q 041248 258 LREKRFVLLLDDIW 271 (813)
Q Consensus 258 l~~k~~LlVlDdv~ 271 (813)
+. +-=||||||+-
T Consensus 165 l~-~~dlLIiDDlG 177 (254)
T COG1484 165 LK-KVDLLIIDDIG 177 (254)
T ss_pred hh-cCCEEEEeccc
Confidence 22 23488999984
No 245
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.16 E-value=0.023 Score=68.51 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999888631 24578899999999999999998875
No 246
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.14 E-value=0.033 Score=66.90 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=37.3
Q ss_pred CcccchhHHHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------E--SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999998888887752 1 12478899999999999999998765
No 247
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.11 E-value=0.0068 Score=60.38 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=64.9
Q ss_pred cChhhhhhhHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHH
Q 041248 9 CDGAFFNRCLDCFLGKVANTSKLQDNLVALETELGKLIAAKNDVMMRVVNAERQQLRTLDQVQVWLSRVEAVETEADELK 88 (813)
Q Consensus 9 ~~~l~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~Wl~~v~~~~~~~ed~l 88 (813)
+|-+ ++.|-+...+....+..++.+++-+++|++.|+.||+.+ ++++..+++. ....+.++-..||++|+++
T Consensus 298 VdFl-L~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVV 369 (402)
T PF12061_consen 298 VDFL-LKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVV 369 (402)
T ss_pred HHHH-HhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeee
Confidence 4556 888888888888888999999999999999999999986 5665555444 8899999999999999999
Q ss_pred Hhcc
Q 041248 89 RHGS 92 (813)
Q Consensus 89 d~~~ 92 (813)
|.+.
T Consensus 370 DaCi 373 (402)
T PF12061_consen 370 DACI 373 (402)
T ss_pred ehhh
Confidence 9874
No 248
>PTZ00494 tuzin-like protein; Provisional
Probab=96.10 E-value=0.39 Score=51.21 Aligned_cols=163 Identities=12% Similarity=0.080 Sum_probs=96.3
Q ss_pred CCcccchhHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHH
Q 041248 157 EPTIVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
...+|.|+.+-..+.+.|.+ .+.+++.+.|.-|+||++|.+....+. .+ ..++|.+.... +-++.+.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~~-----paV~VDVRg~E---DtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-GV-----ALVHVDVGGTE---DTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-CC-----CeEEEEecCCc---chHHHHHH
Confidence 46789999887777776654 478999999999999999999988765 22 35677776654 45778888
Q ss_pred HcCCCCCccCCCCHHHHHHHHH---HHhcCCcEEEEEecccCcccccccc---cCCCCCCCCCcEEEEEcCcccccc---
Q 041248 234 KIGLVDDSWKSKSVEEKALDIF---RSLREKRFVLLLDDIWERVDLTKMG---IPLSGPKNTTSKVVFTTRFVDVCG--- 304 (813)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~---~~l~~k~~LlVlDdv~~~~~~~~~~---~~l~~~~~~~s~ilvTtR~~~v~~--- 304 (813)
.++.+.-+.-++-.+-..+..+ ....++.-+||+-== +..++..+. ..+ .....-+.|++----+++-.
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaL-acDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSL-VSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHH-HccchhheeeeechHhhhchhhc
Confidence 9987653322222222222222 224456556665311 111111110 011 22233456665333222211
Q ss_pred cCCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 305 SMEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 305 ~~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
....-..|.+++++.++|.++..+..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 11123468899999999999887765
No 249
>PRK04132 replication factor C small subunit; Provisional
Probab=96.10 E-value=0.072 Score=62.78 Aligned_cols=150 Identities=12% Similarity=0.053 Sum_probs=88.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCC-CEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEE
Q 041248 187 MGGVGKTTLLTHINNKFLESPTSF-DCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVL 265 (813)
Q Consensus 187 ~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 265 (813)
+.++||||+|..++++. - ...+ ..++-++++.......+. ++++.+....+ .-..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l-~-g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~----------------~~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALAREL-F-GENWRHNFLELNASDERGINVIR-EKVKEFARTKP----------------IGGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhh-h-cccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC----------------cCCCCCEEE
Confidence 77999999999999985 1 1222 236667777654554333 33332211000 001245799
Q ss_pred EEecccCcc--cccccccCCCCCCCCCcEEEEEcCcc-ccccc-CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhH
Q 041248 266 LLDDIWERV--DLTKMGIPLSGPKNTTSKVVFTTRFV-DVCGS-MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDI 341 (813)
Q Consensus 266 VlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~ 341 (813)
|+|+++... ....+...+ -.....+++|.+|.+. .+... .+....+.+.++++++..+.+...+.......+
T Consensus 635 IIDEaD~Lt~~AQnALLk~l-Eep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--- 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTM-EMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--- 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHh-hCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---
Confidence 999997542 334443333 2223355666555443 33222 234578999999999999888876643332222
Q ss_pred HHHHHHHHHHhCCcchHH
Q 041248 342 VELAQTVAKECGGLPLAL 359 (813)
Q Consensus 342 ~~~~~~i~~~c~GlPLai 359 (813)
++....|++.++|.+..+
T Consensus 711 ~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 357889999999988544
No 250
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.0014 Score=65.02 Aligned_cols=189 Identities=16% Similarity=0.155 Sum_probs=102.9
Q ss_pred CCCCCCEEeecCCCCcc---cchhhcCCCCCcEEeccCccc---ccccchhhhcCCCCCceeeccccccCCCCCCCcccc
Q 041248 589 KLGSLQLLDISHAGIRE---LPEELKLLVNLKCLNLRWTRM---LNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSV 662 (813)
Q Consensus 589 ~L~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~~---l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 662 (813)
...+++.|||.+|.|.. +-.-+.+|+.|++|+|+.|.. +..+| ..+.+|++|-+.+++...-.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~------- 137 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQ------- 137 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhh-------
Confidence 35789999999997764 334467899999999998842 22333 24568899988876654321
Q ss_pred ccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcc-hhhhhcceeeeecccCCccccccccc-ccccccceeeecccC
Q 041248 663 LIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSS-NKLKSCIRSLFLNKLGGTKSIHATAF-SDLKHLNELCIRSAV 740 (813)
Q Consensus 663 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~l-~~l~~L~~L~l~~~~ 740 (813)
.-..+..++.++.|+++.|+...+..-... ..-.+.+++|.+..|....-.....+ .-++++..+.+..|+
T Consensus 138 -------~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 138 -------STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred -------hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 112345666666666665543211100000 00112344555544432111110011 124677777777654
Q ss_pred ccceeeecccccCCCCCCcccccCcceEeeccCc--CCCcccchhcCCCCceEeeecCchhhhhhc
Q 041248 741 ELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCH--KLKDLTFLVCAPSLKSLSLYGCNAMEEIIS 804 (813)
Q Consensus 741 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~--~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~ 804 (813)
+++..-+ .+...+|.+..|+|.... .+..+..+..+|.|..|.+++.|-...+-+
T Consensus 211 -lK~~s~e--------k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 211 -LKTESSE--------KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred -ccchhhc--------ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 2211100 011245566666665532 233344567789999999888887665544
No 251
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.08 E-value=0.015 Score=60.71 Aligned_cols=86 Identities=22% Similarity=0.164 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS---WKSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (813)
.-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 457889999999999999999877652 234567898876665542 34555543221 1233455555555
Q ss_pred HHHhc-CCcEEEEEeccc
Q 041248 255 FRSLR-EKRFVLLLDDIW 271 (813)
Q Consensus 255 ~~~l~-~k~~LlVlDdv~ 271 (813)
...++ +..-++|+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55544 456689999974
No 252
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.08 E-value=0.0069 Score=59.24 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH-HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE-KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
.+|.|.|+.|+||||++..+.... .......++.-- .+.... .-...+..+-. ...+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e-~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIE-DPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEc-CCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 578999999999999999887766 222333333221 111100 00000111000 0111223445566777
Q ss_pred cCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCccc
Q 041248 259 REKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVD 301 (813)
Q Consensus 259 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~ 301 (813)
+..+=++++|++.+.+.+....... ..|..++.|+-..+
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a----~~G~~v~~t~Ha~~ 110 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA----ETGHLVMSTLHTNS 110 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH----HcCCEEEEEecCCc
Confidence 7778899999997765544332221 23445666665433
No 253
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.07 E-value=0.029 Score=56.66 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=39.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----SFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
...++.|+|.+|+|||+||.+++... .... ....++|++....++...+ .++++..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~ 78 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFG 78 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhc
Confidence 45799999999999999999997654 1112 1357899998777665444 33444433
No 254
>PRK09354 recA recombinase A; Provisional
Probab=96.06 E-value=0.017 Score=60.67 Aligned_cols=86 Identities=20% Similarity=0.155 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS---WKSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (813)
.-+++-|+|++|+||||||.+++.... ..-..++|+.....++. ..++.++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457899999999999999999887662 23466889988776664 345555543221 1233455555555
Q ss_pred HHHhc-CCcEEEEEeccc
Q 041248 255 FRSLR-EKRFVLLLDDIW 271 (813)
Q Consensus 255 ~~~l~-~k~~LlVlDdv~ 271 (813)
...++ +..-++|+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 456689999984
No 255
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.05 Score=59.68 Aligned_cols=153 Identities=21% Similarity=0.259 Sum_probs=85.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
..=|.+||++|+|||-||++|+|.. +.+| ++|-.+ +++..- .+.++......+.+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHhh
Confidence 4567899999999999999999986 4555 333332 111111 2223333334445555
Q ss_pred cCCcEEEEEecccCc-------cc------ccccccCCCC-CCCCCcEEEEEcCccccc-ccC----CCCcceEcCCCCH
Q 041248 259 REKRFVLLLDDIWER-------VD------LTKMGIPLSG-PKNTTSKVVFTTRFVDVC-GSM----EADKKFQVACLSE 319 (813)
Q Consensus 259 ~~k~~LlVlDdv~~~-------~~------~~~~~~~l~~-~~~~~s~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~ 319 (813)
..-+++|.||.++.. .. ..++...+-. ..-.|.-||-.|..+++. ..+ .-+...-+..-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 678999999999632 11 1122222201 112344455544444442 111 2345667788888
Q ss_pred HHHHHHHHHhhCC--CccCCChhHHHHHHHHHHHhCCcc
Q 041248 320 EDAWELFRKKVGE--ETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 320 ~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
+|-.++++..... .....+-+++++++. .+|.|.-
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 9999999988863 223344455555543 3555654
No 256
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.04 E-value=0.035 Score=55.78 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=49.5
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCC
Q 041248 167 LEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKS 244 (813)
Q Consensus 167 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (813)
+..+.++..+ .....+.++|.+|+|||+||..+++... ..-..+++++ ..++...+-.... . ..
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~-~----~~ 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFS-N----SE 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHh-h----cc
Confidence 3444444432 2235789999999999999999999872 2223455553 3445444443332 0 11
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEecccC
Q 041248 245 KSVEEKALDIFRSLREKRFVLLLDDIWE 272 (813)
Q Consensus 245 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 272 (813)
.+.. .+.+.+. +.=+||+||+..
T Consensus 151 ~~~~----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 151 TSEE----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred ccHH----HHHHHhc-cCCEEEEeCCCC
Confidence 1222 2333344 344888899953
No 257
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.04 E-value=0.026 Score=57.44 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLE---SPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
...+.=|+|.+|+|||.||.+++-...- ..+.-..++|++....++...+. +|++..+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 3568889999999999999888654411 11233569999998888887775 46666543
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.04 E-value=0.038 Score=51.99 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL 222 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 222 (813)
++.|+|.+|+||||++..+..... ..-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcch
Confidence 368999999999999999988762 244567787765544
No 259
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.01 E-value=0.016 Score=69.50 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=37.1
Q ss_pred CcccchhHHHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------E--SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|-+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999887752 1 23456789999999999999998875
No 260
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.01 E-value=0.16 Score=49.85 Aligned_cols=170 Identities=15% Similarity=0.265 Sum_probs=95.4
Q ss_pred CcccchhHHHHH---HHHHHhcC------CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHH
Q 041248 158 PTIVGLQSQLEQ---VWRCLVEE------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQ 228 (813)
Q Consensus 158 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 228 (813)
++++|.+..+.+ |++.|.+. ..+-|..+|++|.|||-+|+++++.. +..| +.+.. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vka-------t 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVKA-------T 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEech-------H
Confidence 357888776544 56666542 46889999999999999999999986 2222 11110 1
Q ss_pred HHHHHHcCCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCc----------ccccc----cccCCC-CCCCCCcE
Q 041248 229 EDIGKKIGLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWER----------VDLTK----MGIPLS-GPKNTTSK 292 (813)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~----~~~~l~-~~~~~~s~ 292 (813)
.-|.+..| +....+..+++.- +.-++++.+|.++.. .+..+ +...+- ...+.|..
T Consensus 186 ~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 11212211 2233444444443 357899999988531 11111 111110 11334555
Q ss_pred EEEEcCcccccccC---CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc
Q 041248 293 VVFTTRFVDVCGSM---EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL 355 (813)
Q Consensus 293 ilvTtR~~~v~~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (813)
.|-.|.+.+..... .-...|+..--+++|-.+++...+..-..+.+.. .+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 56556555543221 2234677777788898898888875433222222 45667777765
No 261
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.98 E-value=0.15 Score=54.30 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 164 QSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 164 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+...+.+.+.+.+ +...+|+|.|.=|+|||++.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455667777764 467899999999999999999999988
No 262
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.97 E-value=0.0085 Score=54.82 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=32.0
Q ss_pred cchhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 161 VGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 161 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
||+...++++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666667777776653 455778999999999999999988875
No 263
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.05 Score=58.06 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=35.4
Q ss_pred ccchhHHHHHHHHHHhc-CCce-EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 160 IVGLQSQLEQVWRCLVE-ESVG-IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 160 ~vGr~~~~~~l~~~L~~-~~~~-vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++|-+....++..+..+ ++.. .+.++|++|+||||+|..+.+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 56777777888887774 3344 49999999999999999999877
No 264
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.89 E-value=0.052 Score=59.40 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc-cCHHHHHHHHHHHcCCCCCcc-CCCCHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD-LRLEKIQEDIGKKIGLVDDSW-KSKSVEEKALDIF 255 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 255 (813)
...+|.++|.+|+||||+|..++... .. ..+ .+..+++... ....+.+..+++.++.+.... ...+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46789999999999999999998877 22 223 3444444321 123445666677776543211 1223333333333
Q ss_pred HHhcCCcEEEEEecc
Q 041248 256 RSLREKRFVLLLDDI 270 (813)
Q Consensus 256 ~~l~~k~~LlVlDdv 270 (813)
+...+. -++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 344443 46777776
No 265
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.2 Score=48.70 Aligned_cols=166 Identities=19% Similarity=0.264 Sum_probs=90.4
Q ss_pred ccc-hhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 160 IVG-LQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 160 ~vG-r~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
++| -+.++.+|.+.+.- .+.+-|.++|++|.|||-||+.++++- ...|+.||...
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgse--- 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSE--- 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHH---
Confidence 454 56777777766531 256678899999999999999999875 23456666531
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCcc----------c------ccccccCCC-CCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWERV----------D------LTKMGIPLS-GPK 287 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~------~~~~~~~l~-~~~ 287 (813)
-+++-|.+. ......++-.- ..-+.+|..|.+++.. + .-++...+- -..
T Consensus 217 lvqk~igeg-------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 217 LVQKYIGEG-------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHhhhh-------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 112222110 11112222111 2456777888875420 0 111111220 012
Q ss_pred CCCcEEEEEcCcccccc-----cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHH
Q 041248 288 NTTSKVVFTTRFVDVCG-----SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVA 349 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~ 349 (813)
.+..+||..|..-++.. .-..+..|+.++-+++.-.++++-+....+...--++..+++++.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 35678888776555432 223456788888888888888877654433222233444444443
No 266
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.85 E-value=0.02 Score=54.94 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWA 216 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv 216 (813)
...+|.+.|+.|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45689999999999999999999887 2344444444
No 267
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.027 Score=54.59 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=45.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
++.+|+|.|.+|+||||+|+.++..+ +...-.+ ++-.. +-...-.....+......+.....+.+-+...|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~--I~~D~-YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVV--ISLDD-YYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceE--eeccc-cccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 35789999999999999999999987 2221111 11111 111111111222222222222445666777888888
Q ss_pred hcCCc
Q 041248 258 LREKR 262 (813)
Q Consensus 258 l~~k~ 262 (813)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 268
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0012 Score=61.97 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=46.8
Q ss_pred ccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCc--ccchhcCCCCceEeeecCchhh
Q 041248 724 AFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKD--LTFLVCAPSLKSLSLYGCNAME 800 (813)
Q Consensus 724 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~c~~l~ 800 (813)
.+..++.|+.|.+.+|..+.+.+++.+. ...++|+.|+|++|+.+++ |-++..+++|+.|.|++.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 4556667777777777766655555444 2567778888888777766 4466777777777777776654
No 269
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.82 E-value=0.033 Score=53.23 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++.++|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998876
No 270
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.81 E-value=0.068 Score=54.23 Aligned_cols=93 Identities=20% Similarity=0.324 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCC-----CccCCCCHHH--
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVD-----DSWKSKSVEE-- 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 249 (813)
.-..++|.|..|+|||||++.+++... . .+-+.++++.+++.. .+.++...+.+.-.+.. ...+......
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~-~-~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA-K-AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHH-h-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999999999999872 1 223456666676654 45566666654321110 0011111111
Q ss_pred ---HHHHHHHHh---cCCcEEEEEecccC
Q 041248 250 ---KALDIFRSL---REKRFVLLLDDIWE 272 (813)
Q Consensus 250 ---~~~~l~~~l---~~k~~LlVlDdv~~ 272 (813)
..-.+.+++ +++.+|+++||+-.
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 122234444 38999999999843
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.80 E-value=0.011 Score=65.38 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=40.0
Q ss_pred cccchhHHHHHHHHHHh------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLV------EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+++|.++.++++++.|. +...+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 57999999999999983 3466899999999999999999999876
No 272
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.031 Score=56.48 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCC--CCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESP--TSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
.++|.++|++|.|||+|+++++++. .++ +.+....-+.++ -..++.+...+ .++....+.+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEin----shsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEIN----SHSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEe----hhHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4789999999999999999999988 332 222222223222 12232222221 23455666677777
Q ss_pred HhcCCcE--EEEEecccC
Q 041248 257 SLREKRF--VLLLDDIWE 272 (813)
Q Consensus 257 ~l~~k~~--LlVlDdv~~ 272 (813)
.+.++.. .+.+|.|.+
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 7776554 345588853
No 273
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.80 E-value=0.023 Score=54.10 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=60.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC--CC---CCC--EEEEEEecCccCHHHHHHHHHHHcCCCCC--c--cCCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES--PT---SFD--CVIWAVVSKDLRLEKIQEDIGKKIGLVDD--S--WKSKS 246 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~---~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~--~~~~~ 246 (813)
.-.+++|+|+.|+|||||.+.+..+...+ .. .|. .+.|+ .+ .+.++.+++... . ...-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45789999999999999999886432111 00 110 12232 11 456666665321 0 11112
Q ss_pred HH-HHHHHHHHHhcCC--cEEEEEecccCccc---ccccccCCCCCCCCCcEEEEEcCccccc
Q 041248 247 VE-EKALDIFRSLREK--RFVLLLDDIWERVD---LTKMGIPLSGPKNTTSKVVFTTRFVDVC 303 (813)
Q Consensus 247 ~~-~~~~~l~~~l~~k--~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~s~ilvTtR~~~v~ 303 (813)
.. ...-.+.+.+..+ +-++++|+.-...+ .+.+...+......|..||++|.+....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 22 2223344555566 77888999854322 2222222211112366778888776554
No 274
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.80 E-value=0.078 Score=61.74 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=88.9
Q ss_pred cccchhHHHHHHHHHH---hc---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHH
Q 041248 159 TIVGLQSQLEQVWRCL---VE---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEK 226 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 226 (813)
++.|.+...+++.+.+ .. .-.+-|.++|++|+|||++|+.+.+.. ...| +.+..+ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------D 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------H
Confidence 4567666655554433 21 113458999999999999999998876 2233 222211 1
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc------------c----cccccCCCC-CCCC
Q 041248 227 IQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD------------L----TKMGIPLSG-PKNT 289 (813)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------------~----~~~~~~l~~-~~~~ 289 (813)
+.. + . ...........+.......+.+|++|+++.... . ..+...+.. ....
T Consensus 221 ~~~-~---~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVE-M---F-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHH-h---h-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 111 0 0 011122222233333445788999999864210 1 111111100 1123
Q ss_pred CcEEEEEcCccccccc-----CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc
Q 041248 290 TSKVVFTTRFVDVCGS-----MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL 355 (813)
Q Consensus 290 ~s~ilvTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (813)
+.-+|.||...+.... -.....+.++..+.++-.+++..+........+.+ ...+++.+.|.
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 4455557765543221 12356788888888888888888775443222222 23466666653
No 275
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.79 E-value=0.053 Score=54.78 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDI 231 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (813)
...++.|.|.+|+|||++|.++..... ..-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHH
Confidence 467999999999999999999876541 2345688887654 455555543
No 276
>PRK06547 hypothetical protein; Provisional
Probab=95.79 E-value=0.014 Score=55.31 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=27.8
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 170 VWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 170 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+...+......+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344445678899999999999999999998865
No 277
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.0046 Score=36.11 Aligned_cols=18 Identities=28% Similarity=0.624 Sum_probs=8.1
Q ss_pred CCEEeecCCCCcccchhh
Q 041248 593 LQLLDISHAGIRELPEEL 610 (813)
Q Consensus 593 L~~L~l~~~~i~~lp~~~ 610 (813)
|++|+|++|+++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 278
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.73 E-value=0.027 Score=63.08 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
..++..++|++|.||||||..++++. .| .++=+++|...+...+-..|...+..+. .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 46789999999999999999998875 23 3667788887777777666666554322 1
Q ss_pred h--cCCcEEEEEecccC
Q 041248 258 L--REKRFVLLLDDIWE 272 (813)
Q Consensus 258 l--~~k~~LlVlDdv~~ 272 (813)
+ .+++.-+|+|.++-
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 2 26788899999864
No 279
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.16 Score=57.69 Aligned_cols=170 Identities=18% Similarity=0.139 Sum_probs=92.2
Q ss_pred cccchhHHHHHHHHHHh---c----------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 159 TIVGLQSQLEQVWRCLV---E----------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---~----------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.+.|.+...+.+.+.+. . ...+.+.++|++|+|||.||+++++.. ...|-.+.+ .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----
Confidence 34555655555554432 1 245688999999999999999999965 344433321 1
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcccc-------------cccccCCCC--CCCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVDL-------------TKMGIPLSG--PKNTT 290 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-------------~~~~~~l~~--~~~~~ 290 (813)
. +.. .+...+.......+....+..+..|.+|.++....+ ..+...+ . ....+
T Consensus 311 ~----l~s-------k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~-d~~e~~~~ 378 (494)
T COG0464 311 E----LLS-------KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTEL-DGIEKAEG 378 (494)
T ss_pred H----Hhc-------cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHh-cCCCccCc
Confidence 1 110 012223333334444455678999999999642111 1111122 1 11223
Q ss_pred cEEEEEcCcccccc---c--CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCC
Q 041248 291 SKVVFTTRFVDVCG---S--MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGG 354 (813)
Q Consensus 291 s~ilvTtR~~~v~~---~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 354 (813)
..||-||-...... . ..-...+.++.-+.++..+.|..+....... -...-..+.+++...|
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~--~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP--LAEDVDLEELAEITEG 445 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc--chhhhhHHHHHHHhcC
Confidence 33444444333322 1 1235678899999999999999998643311 0111234455555555
No 280
>PRK10867 signal recognition particle protein; Provisional
Probab=95.71 E-value=0.044 Score=59.79 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999988887766
No 281
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.19 Score=53.05 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+.++|+.|+||||+|+.++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999988875
No 282
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.021 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.69 E-value=0.039 Score=58.81 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc-cCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD-LRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
...+++++|+.|+||||++..+.... ........+..++.... ....+.++...+.++..... ..+..+....+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-H
Confidence 34799999999999999999998875 11112234555554332 23445566666666654321 12222232222 3
Q ss_pred HhcCCcEEEEEeccc
Q 041248 257 SLREKRFVLLLDDIW 271 (813)
Q Consensus 257 ~l~~k~~LlVlDdv~ 271 (813)
.+.++ -++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34454 455688874
No 284
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.68 E-value=0.045 Score=50.74 Aligned_cols=117 Identities=22% Similarity=0.194 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC---ccCHHHHHHHHHHHcCC---CC-CccCCCCHHHH--
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK---DLRLEKIQEDIGKKIGL---VD-DSWKSKSVEEK-- 250 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~---~~-~~~~~~~~~~~-- 250 (813)
..|-|++..|.||||+|...+-+.. ...+ .+.++..-. ......++..+ ..+.. .. ..+...+..+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 5788999999999999988777652 2223 444544333 23333444333 11100 00 00111111111
Q ss_pred -----HHHHHHHhc-CCcEEEEEecccCc-----ccccccccCCCCCCCCCcEEEEEcCccc
Q 041248 251 -----ALDIFRSLR-EKRFVLLLDDIWER-----VDLTKMGIPLSGPKNTTSKVVFTTRFVD 301 (813)
Q Consensus 251 -----~~~l~~~l~-~k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~~~s~ilvTtR~~~ 301 (813)
....++.+. +.-=|+|||++--. .+.+.+...+ .....+.-+|+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll-~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLL-KAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHH-HcCCCCCEEEEECCCCC
Confidence 122333343 34569999998432 2333333333 34455778999999754
No 285
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.67 E-value=0.051 Score=56.79 Aligned_cols=116 Identities=24% Similarity=0.247 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 162 GLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 162 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
+|....+...+++.+ ...+-+.++|..|+|||.||..+++... ...+. +.++++ ..++..+....+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEH------HHHHHHHHHHHhc
Confidence 455555555555542 1346789999999999999999999973 22333 445543 3455555544421
Q ss_pred CCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccC--cccccc--cccCCCCCC-CCCcEEEEEcC
Q 041248 238 VDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWE--RVDLTK--MGIPLSGPK-NTTSKVVFTTR 298 (813)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~--~~~~l~~~~-~~~s~ilvTtR 298 (813)
.+..+. .+.+. +-=||||||+.. ..+|.. +...+.... ..+-.+|+||-
T Consensus 206 -------~~~~~~----l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKEK----IDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHHH----HHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 112222 22232 445899999953 334532 322210111 23456777776
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.66 E-value=0.046 Score=56.66 Aligned_cols=88 Identities=23% Similarity=0.270 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
..++++|+|++|+||||++..++... .....-..+..++..... .....+....+.++.... ...+..+....+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 35799999999999999999988776 211111245555544321 122333344444554332 2233344433333
Q ss_pred HhcCCcEEEEEecc
Q 041248 257 SLREKRFVLLLDDI 270 (813)
Q Consensus 257 ~l~~k~~LlVlDdv 270 (813)
.+.+ .=++++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3343 346667753
No 287
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.64 E-value=0.064 Score=56.42 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLE---SPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
...++.|+|.+|+|||+|+..++..... ....-..++|++....++..+ +.++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 4678999999999999999988764310 111223679999888777776 3445666554
No 288
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.63 E-value=0.049 Score=58.47 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCcc---CCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSW---KSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (813)
...++.|.|.+|+|||||+.+++.... .....++|++... +..++ ..-++.++...+.. ...+.++....+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 357999999999999999999988762 2234677876543 33333 22244555433221 122333333332
Q ss_pred HHHhcCCcEEEEEecc
Q 041248 255 FRSLREKRFVLLLDDI 270 (813)
Q Consensus 255 ~~~l~~k~~LlVlDdv 270 (813)
. ..+.-++|+|.+
T Consensus 155 ~---~~~~~lVVIDSI 167 (372)
T cd01121 155 E---ELKPDLVIIDSI 167 (372)
T ss_pred H---hcCCcEEEEcch
Confidence 2 235667888886
No 289
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.61 E-value=0.051 Score=59.28 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCcc-CCCCHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDSW-KSKSVEEKALDIF 255 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 255 (813)
...++.++|.+|+||||+|..++... ..+..+ .+.-|++.... ...+.+....+..+.+.... ...++.+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 45799999999999999999888765 111222 34444443211 12333444555555432211 1233444444443
Q ss_pred HHhcCCcE-EEEEeccc
Q 041248 256 RSLREKRF-VLLLDDIW 271 (813)
Q Consensus 256 ~~l~~k~~-LlVlDdv~ 271 (813)
+....+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33333334 67777663
No 290
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.59 E-value=0.022 Score=66.75 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=37.0
Q ss_pred cccchhHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|-+..++.|.+.+.. .....+.++|+.|+|||++|+.++...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 578989888888888762 124578899999999999999998876
No 291
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.58 E-value=0.11 Score=54.42 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=42.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEecCccCHHHHHHHHHHHcCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES---PTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLV 238 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 238 (813)
...++-|+|.+|+|||+|+.+++-..... ...-..++|++....++++++. ++++.++..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 45788899999999999998876433110 1123478999998888888775 456766653
No 292
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.56 E-value=0.099 Score=50.98 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=44.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCC---EEEEEEecCccCHHHHHHHHHHHc--CCCCCccCCCCHHHHHHHHH
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKFLESPTSFD---CVIWAVVSKDLRLEKIQEDIGKKI--GLVDDSWKSKSVEEKALDIF 255 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 255 (813)
||+|.|.+|+||||+|+.+...... .... ....+.............. -... ..........+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~--~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK--RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT--CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc--cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 6999999999999999999998721 2222 1233332222221222111 1111 11111123456667777777
Q ss_pred HHhcCCcEEE
Q 041248 256 RSLREKRFVL 265 (813)
Q Consensus 256 ~~l~~k~~Ll 265 (813)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666444
No 293
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.54 E-value=0.083 Score=53.31 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc----------------
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS---------------- 241 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 241 (813)
...++.|+|.+|+|||+||.++..... ..-..++|++..+. ..++.+.+ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 467899999999999999999966541 23457888887654 45555553 334322111
Q ss_pred --cCCCCHHHHHHHHHHHhcC-CcEEEEEeccc
Q 041248 242 --WKSKSVEEKALDIFRSLRE-KRFVLLLDDIW 271 (813)
Q Consensus 242 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 271 (813)
......++....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234555566666543 55578888874
No 294
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.52 E-value=0.026 Score=53.34 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=44.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcC-
Q 041248 182 IGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLRE- 260 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 260 (813)
+.|.|..|+|||++|.++.... ...++++.-.+.++.+ +...|.+--......+ ...+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w---~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAHW---RTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCc---eEeecHHHHHHHHHhc
Confidence 6799999999999999987642 2356667666666542 3333333221112212 222222333333321
Q ss_pred -CcEEEEEecc
Q 041248 261 -KRFVLLLDDI 270 (813)
Q Consensus 261 -k~~LlVlDdv 270 (813)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2337899997
No 295
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.49 E-value=0.11 Score=54.95 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=43.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEecCccCHHHHHHHHHHHcCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLE---SPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLV 238 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 238 (813)
...++-|+|.+|+|||+|+.+++-.... ....-..++|++....|++.++.. +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4567889999999999999988643311 112234789999999898888654 56666654
No 296
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.025 Score=51.32 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCC
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVD 239 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 239 (813)
+|.|-|++|+||||+|+.++++. .-.| .+.-.++++|++..|+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999987 1111 133478899999988754
No 297
>PHA00729 NTP-binding motif containing protein
Probab=95.48 E-value=0.02 Score=56.12 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=27.7
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 170 VWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 170 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555566789999999999999999998875
No 298
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.46 E-value=0.014 Score=58.22 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.|.|++|+||||+|+.+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 299
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.46 E-value=0.099 Score=55.27 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES---PTSFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
...++-|+|.+|+|||+++.+++...... ...-..++|++....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 35788999999999999999998765110 0111379999998888877654 44555553
No 300
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.26 Score=48.25 Aligned_cols=53 Identities=30% Similarity=0.448 Sum_probs=40.2
Q ss_pred CccCCCC--CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 151 ADERPTE--PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 151 ~~~~~~~--~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++.|.+ +++=|-+++++++++.+.- ...+-|..+|++|.|||-+|++.+..-
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 3444443 3567889999999998741 245678899999999999999987754
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.45 E-value=0.069 Score=53.33 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC-----ccCHHHHHHHHHHHcCCCCCcc----CCCCHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK-----DLRLEKIQEDIGKKIGLVDDSW----KSKSVE 248 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~----~~~~~~ 248 (813)
...+++|+|..|+||||+++.+..-. ......+.| .-.. .....+-..++++.+++..+.. ..-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f-~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTSGEILF-EGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEE-cCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45799999999999999999998865 223333333 2111 2223445666777777543211 111222
Q ss_pred HHH-HHHHHHhcCCcEEEEEecccCc
Q 041248 249 EKA-LDIFRSLREKRFVLLLDDIWER 273 (813)
Q Consensus 249 ~~~-~~l~~~l~~k~~LlVlDdv~~~ 273 (813)
+.+ -.+.+.+.-++-++|.|..-+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhh
Confidence 222 3466778889999999997543
No 302
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.44 E-value=0.073 Score=54.45 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 170 VWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 170 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+++.+.+..+|.|.|.+|+|||||+..+.+..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444555688999999999999999999999876
No 303
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.44 E-value=0.11 Score=55.09 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=43.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEecCccCHHHHHHHHHHHcCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLE---SPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLV 238 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 238 (813)
...++-|+|.+|+|||+|+..++-.... ....-..++|++....++++++ .+|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 4578889999999999999887754310 0112237999999998888776 4566766653
No 304
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.018 Score=52.13 Aligned_cols=25 Identities=44% Similarity=0.497 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..-|+|.|++|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4568999999999999999999887
No 305
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.41 E-value=0.013 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041248 182 IGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~ 203 (813)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998873
No 306
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.39 E-value=0.046 Score=57.21 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.....++|||++|+|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999987
No 307
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.39 E-value=0.019 Score=55.55 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 308
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.39 E-value=0.046 Score=52.58 Aligned_cols=120 Identities=21% Similarity=0.248 Sum_probs=62.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE---ecCccCHHH------HHHHHHHHcCCCCC---ccCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAV---VSKDLRLEK------IQEDIGKKIGLVDD---SWKSK 245 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~------~~~~i~~~l~~~~~---~~~~~ 245 (813)
.-.+++|.|..|.|||||++.++... ......+++. +.. .+... ...++++.+++... ....-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45799999999999999999998865 1223333332 211 11111 12224555554321 01111
Q ss_pred C-HHHHHHHHHHHhcCCcEEEEEecccCccc---ccccccCCCCCCCC-CcEEEEEcCcccc
Q 041248 246 S-VEEKALDIFRSLREKRFVLLLDDIWERVD---LTKMGIPLSGPKNT-TSKVVFTTRFVDV 302 (813)
Q Consensus 246 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~-~s~ilvTtR~~~v 302 (813)
+ -+...-.+.+.+...+-++++|+.-...| .+.+...+...... +..||++|.+...
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 2 22233345566677888999999854322 22222222111112 5677777776543
No 309
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.39 E-value=0.023 Score=62.04 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 46899999999998888654 578899999999999999998875
No 310
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.2 Score=48.74 Aligned_cols=45 Identities=29% Similarity=0.365 Sum_probs=35.4
Q ss_pred cccchhHHHHHHHHHHh-------------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLV-------------EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++=|-+-.++++.+... -+..+-|.++|++|+|||-||++++++-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 44567777777777653 1467788999999999999999999975
No 311
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.33 Score=54.55 Aligned_cols=173 Identities=18% Similarity=0.120 Sum_probs=91.4
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 159 TIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
++-|..+.++.+.+.+.- ....-|.++|++|+|||-||.+++... . .-+++|-.+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~-----~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---N-----LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---C-----eeEEEecCH----
Confidence 344555555555555531 123458899999999999999998875 1 234555443
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc-------------cccccccCCCC-CCCCCc
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV-------------DLTKMGIPLSG-PKNTTS 291 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~~-~~~~~s 291 (813)
+++.. .+ +.+++.....+.+.-.-+++++.+|.+++.. ....+...+-. .+-.|.
T Consensus 736 ElL~K---yI--------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 736 ELLSK---YI--------GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred HHHHH---Hh--------cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 12211 12 2233333334444455699999999996521 01122222201 112344
Q ss_pred EEEE-EcCccccc----ccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchH
Q 041248 292 KVVF-TTRFVDVC----GSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLA 358 (813)
Q Consensus 292 ~ilv-TtR~~~v~----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (813)
-|+- |||..-+- +.-.-++.+.=+.-++.+-.++|...........+. ..+.++.+.+|..-|
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~v----dl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDV----DLECLAQKTDGFTGA 872 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcccc----chHHHhhhcCCCchh
Confidence 4443 66644331 111123344445556777778887766533322222 345677777776543
No 312
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.36 E-value=0.089 Score=51.09 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=37.5
Q ss_pred CcccchhHHHHHHHHHH----hcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCL----VEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.|...+.+++-- ......-|.+||.-|.|||+|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 46799998888887643 23356678999999999999999999987
No 313
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.079 Score=56.23 Aligned_cols=89 Identities=22% Similarity=0.186 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
+.++|+++|++|+||||++..++.... ... ..+..+...... ...+-+...++.++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcC-CcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 347999999999999999999988762 122 234445543321 122333444445554321 22345555544443
Q ss_pred HhcC-CcEEEEEeccc
Q 041248 257 SLRE-KRFVLLLDDIW 271 (813)
Q Consensus 257 ~l~~-k~~LlVlDdv~ 271 (813)
.-.. +.=++++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23466777763
No 314
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.34 E-value=0.0083 Score=56.81 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++.|.|.+|+||||+|..+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc
Confidence 368999999999999999998764
No 315
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.33 E-value=0.029 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|..|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998865
No 316
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.31 E-value=0.048 Score=52.34 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|.|..|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998865
No 317
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.30 E-value=0.02 Score=54.04 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC--ccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK--DLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIF 255 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (813)
.-.+++|.|..|+|||||.+.++... ......+++.-.. ..+..+. ..+.++... .-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 45789999999999999999998765 2233444443111 1111111 111122111 1112222333455
Q ss_pred HHhcCCcEEEEEecccCccc---ccccccCCCCCCCCCcEEEEEcCcccc
Q 041248 256 RSLREKRFVLLLDDIWERVD---LTKMGIPLSGPKNTTSKVVFTTRFVDV 302 (813)
Q Consensus 256 ~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~s~ilvTtR~~~v 302 (813)
+.+-.++-++++|+.-...| ...+...+......+..||++|.+...
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 66667788999999854322 222222221111235677778776553
No 318
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.29 E-value=0.063 Score=50.85 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC--C---CEEEEEEecCccCH--HHHHHHHHHHcCCCCCccCCCCHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTS--F---DCVIWAVVSKDLRL--EKIQEDIGKKIGLVDDSWKSKSVEEK 250 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~--f---~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 250 (813)
.-.+++|+|..|.|||||++.+........+. + ..+.++ .+.... ..+...+.-. .. ..-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WD--DVLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CC--CCCCHHHHH
Confidence 45689999999999999999998875211111 1 112222 222211 1233332210 11 011222333
Q ss_pred HHHHHHHhcCCcEEEEEecccCccc---ccccccCCCCCCCCCcEEEEEcCccccc
Q 041248 251 ALDIFRSLREKRFVLLLDDIWERVD---LTKMGIPLSGPKNTTSKVVFTTRFVDVC 303 (813)
Q Consensus 251 ~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~s~ilvTtR~~~v~ 303 (813)
.-.+.+.+..++-++++|+.-...| ...+...+ ... +..||++|.+....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL-KEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH-HHh--CCEEEEEeCChhHH
Confidence 3445566667778889999754322 22222222 111 35677777765543
No 319
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.29 E-value=0.1 Score=53.69 Aligned_cols=90 Identities=22% Similarity=0.219 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH--HHHHHHHHHHcCCCCCc-cCCCCHHHH-HHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL--EKIQEDIGKKIGLVDDS-WKSKSVEEK-ALD 253 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 253 (813)
+.++|.++|++|+||||++..++.... ..-..+.+++... +.. .+-+....+..+..... ....+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 457999999999999999999987762 2223566666543 222 23334445555532110 011222222 233
Q ss_pred HHHHhcCCcEEEEEeccc
Q 041248 254 IFRSLREKRFVLLLDDIW 271 (813)
Q Consensus 254 l~~~l~~k~~LlVlDdv~ 271 (813)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 433333444577788763
No 320
>PRK08233 hypothetical protein; Provisional
Probab=95.28 E-value=0.016 Score=55.90 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999876
No 321
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.27 E-value=0.14 Score=54.27 Aligned_cols=58 Identities=22% Similarity=0.384 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----SFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
...++-|+|.+|+|||+++.+++.... ... .-..++|++....++...+.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~-~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQ-LPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhc-cccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 457889999999999999999987641 111 114799999988888777654 4455543
No 322
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.26 E-value=0.027 Score=56.61 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+|+|.|+.|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998876
No 323
>PRK04328 hypothetical protein; Provisional
Probab=95.26 E-value=0.078 Score=53.94 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
...++.|.|.+|+|||+||.++..... ..-...+|++.... ..++.+ .+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~--~~~i~~-~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEH--PVQVRR-NMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCC--HHHHHH-HHHHcCC
Confidence 457899999999999999999876641 23456788877653 334333 3444443
No 324
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.25 E-value=0.084 Score=53.80 Aligned_cols=89 Identities=21% Similarity=0.199 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHH-cC---CCCCccCCCCHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKK-IG---LVDDSWKSKSVEEKALD 253 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~---~~~~~~~~~~~~~~~~~ 253 (813)
..+++=|+|+.|+||||+|.+++-.. ...-..++|++.-..+++..+.. ++.. +. ...+ .......+.+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~-~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQP-DTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecC-CCHHHHHHHHHH
Confidence 45788899999999999999987766 34444889999988888776543 3333 21 1111 011122233444
Q ss_pred HHHHhcCCcEEEEEeccc
Q 041248 254 IFRSLREKRFVLLLDDIW 271 (813)
Q Consensus 254 l~~~l~~k~~LlVlDdv~ 271 (813)
+.+....+--|+|+|.+-
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 444444456788888873
No 325
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.24 E-value=0.016 Score=45.54 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 326
>PTZ00035 Rad51 protein; Provisional
Probab=95.23 E-value=0.19 Score=53.40 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=40.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC----CCCCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES----PTSFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
...++.|+|.+|+|||+|+..++-.. .. ...-..++|++....++..++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 46789999999999999999887554 21 112346779998777777663 445666554
No 327
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=4 Score=41.28 Aligned_cols=90 Identities=22% Similarity=0.350 Sum_probs=57.3
Q ss_pred cccchhHHHHHHHHHHh---------cC---CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHH
Q 041248 159 TIVGLQSQLEQVWRCLV---------EE---SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEK 226 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---------~~---~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 226 (813)
++.|-+..++.|.+... .+ .-+-|.++|++|.||+.||++|+... ... |.+||.. +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nST-----FFSvSSS----D 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NST-----FFSVSSS----D 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCc-----eEEeehH----H
Confidence 56788888888877643 11 35678899999999999999999876 222 2333322 1
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccC
Q 041248 227 IQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWE 272 (813)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 272 (813)
+. -+.+| ..+.+...+.+.- .+|+-+|.+|.++.
T Consensus 202 Lv---SKWmG---------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 LV---SKWMG---------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HH---HHHhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11 11222 1234455555554 46889999999863
No 328
>PRK07667 uridine kinase; Provisional
Probab=95.22 E-value=0.028 Score=54.71 Aligned_cols=36 Identities=22% Similarity=0.463 Sum_probs=28.6
Q ss_pred HHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 168 EQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 168 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.+.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555543 345799999999999999999998876
No 329
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.20 E-value=0.065 Score=48.18 Aligned_cols=102 Identities=19% Similarity=0.305 Sum_probs=46.8
Q ss_pred CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEeecCCCCcccchh-hcCC
Q 041248 536 VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDISHAGIRELPEE-LKLL 613 (813)
Q Consensus 536 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~~-~~~l 613 (813)
+..+++|+.+.+. . .+..++...|..+..|+.+.+.++ +..++ ..+.++..|+++.+.. .+..++.. +..+
T Consensus 8 F~~~~~l~~i~~~-~-~~~~I~~~~F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 8 FYNCSNLESITFP-N-TIKKIGENAFSNCTSLKSINFPNN----LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTT-TT--EEEET-S-T--EE-TTTTTT-TT-SEEEESST----TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HhCCCCCCEEEEC-C-CeeEeChhhccccccccccccccc----ccccceeeeecccccccccccc-ccccccccccccc
Confidence 4555666666664 2 355666666666666776666553 33332 2455555666666654 44444433 4446
Q ss_pred CCCcEEeccCcccccccchhhhcCCCCCceeecc
Q 041248 614 VNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMF 647 (813)
Q Consensus 614 ~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 647 (813)
++|+.+++..+ +..++...+.++ +|+.+.+.
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 66777766543 455555556665 66666554
No 330
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.19 E-value=0.022 Score=56.04 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=7.4
Q ss_pred cCCCcccEEEeccC
Q 041248 562 QCMPSLKVLKMSNC 575 (813)
Q Consensus 562 ~~l~~L~~L~l~~~ 575 (813)
-+|++|+..+||.|
T Consensus 89 lkcp~l~~v~LSDN 102 (388)
T COG5238 89 LKCPRLQKVDLSDN 102 (388)
T ss_pred hcCCcceeeecccc
Confidence 34455555555555
No 331
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.14 E-value=0.019 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998775
No 332
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.10 E-value=0.049 Score=58.28 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=36.9
Q ss_pred CcccchhHHHHHHHHHHhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEE--------------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.++.+..+.-.+... ..+-|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46889988888876655421 23678999999999999999999876
No 333
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.08 E-value=0.032 Score=53.21 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|..|+|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45799999999999999999998765
No 334
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.059 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|..|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45789999999999999999998875
No 335
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.06 E-value=0.021 Score=56.48 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+..+|+|.|.+|+||||||+.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 336
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.06 E-value=0.14 Score=52.43 Aligned_cols=126 Identities=17% Similarity=0.086 Sum_probs=64.5
Q ss_pred HHHHHHHh-cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCC-CCCcc---
Q 041248 168 EQVWRCLV-EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGL-VDDSW--- 242 (813)
Q Consensus 168 ~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~--- 242 (813)
+.++..+. .+...-++|+|+.|+|||||.+.+.... ......+++.-..-... +-..++...... .....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL----STGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc----CCCCceEEECCEEeecc-hhHHHHHHHhccccccccccc
Confidence 33344443 3445789999999999999999998876 22222333321000000 111233322221 11100
Q ss_pred -CCCCHHHHHHHHHHHhc-CCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCcccc
Q 041248 243 -KSKSVEEKALDIFRSLR-EKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDV 302 (813)
Q Consensus 243 -~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v 302 (813)
+..+.......+...+. ..+-++++|.+.....+..+...+ ..|..||+||-+..+
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHH
Confidence 00000111222333333 578899999987666555554443 246778888876444
No 337
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.05 E-value=0.15 Score=51.24 Aligned_cols=40 Identities=28% Similarity=0.279 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK 220 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 220 (813)
...++.|.|.+|+||||||.++..... ..-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 457999999999999999998776541 2234678887644
No 338
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.02 E-value=0.088 Score=47.27 Aligned_cols=113 Identities=22% Similarity=0.312 Sum_probs=62.1
Q ss_pred ceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCE
Q 041248 519 NVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQL 595 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~ 595 (813)
.++.+.+.. .+..+. .+..+++|+.+.+.. .+..++...|..++.|+.+.+..+ +..++ ..+..+.+|+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPNN----LKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETST----T-EE-TTTTTT-TTECE
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeeccccccccccccc----ccccccccccccccccc
Confidence 566666653 455553 367888999999873 388889888999989999999753 34443 35667899999
Q ss_pred EeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCc
Q 041248 596 LDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLR 642 (813)
Q Consensus 596 L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 642 (813)
+++..+ +..++.. +.+. +|+.+.+.. .+..++.+.+.++++|+
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 999775 7666654 6666 899998875 35778877788887774
No 339
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.02 E-value=0.16 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998776554
No 340
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.021 Score=54.53 Aligned_cols=49 Identities=29% Similarity=0.441 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
..+|+|-||-|+||||||+.+.++. . |. ++.=.+..++-++.++.++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cc-eeeecccCChHHHHHHHhHHH
Confidence 4789999999999999999999987 2 22 222334444445555555443
No 341
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.96 E-value=0.085 Score=51.38 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCC-------CCEEEEEEecCc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTS-------FDCVIWAVVSKD 221 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~-------f~~~~wv~~~~~ 221 (813)
..++.|.|.+|+||||++.++.......... -..++|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3588999999999999999988877322112 236788876555
No 342
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.14 Score=54.20 Aligned_cols=89 Identities=19% Similarity=0.087 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
+.++++++|+.|+||||++..++... ... -..+.+++..... ....-++..++.++.+.. ...+..+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46899999999999999999988765 222 2346666664332 224455666666665332 23455555444443
Q ss_pred Hhc-CCcEEEEEeccc
Q 041248 257 SLR-EKRFVLLLDDIW 271 (813)
Q Consensus 257 ~l~-~k~~LlVlDdv~ 271 (813)
.-. +..=++++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 321 334577778763
No 343
>PTZ00301 uridine kinase; Provisional
Probab=94.94 E-value=0.024 Score=55.71 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 344
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.92 E-value=0.12 Score=55.56 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESP-TSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIF 255 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (813)
...+|.++|+.|+||||.+..++....... ..-..+..+++.... .....++..++.++.+.. ...+..+....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999887762111 122345556554321 122336666666665432 2233444444444
Q ss_pred HHhcCCcEEEEEeccc
Q 041248 256 RSLREKRFVLLLDDIW 271 (813)
Q Consensus 256 ~~l~~k~~LlVlDdv~ 271 (813)
+. .+.-++++|.+.
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 33 345578888874
No 345
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.91 E-value=0.85 Score=47.91 Aligned_cols=49 Identities=24% Similarity=0.218 Sum_probs=34.8
Q ss_pred ceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 311 KFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 311 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
++++++++.+|+..++.-.............+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999998877654442222233456677777779998543
No 346
>PRK06762 hypothetical protein; Provisional
Probab=94.91 E-value=0.025 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 347
>PRK14527 adenylate kinase; Provisional
Probab=94.90 E-value=0.037 Score=53.84 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|.|+|++|+||||+|+.++..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 348
>PRK06217 hypothetical protein; Validated
Probab=94.87 E-value=0.042 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 349
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.85 E-value=0.051 Score=55.63 Aligned_cols=105 Identities=21% Similarity=0.229 Sum_probs=56.7
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCC
Q 041248 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDD 240 (813)
Q Consensus 161 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 240 (813)
.|...+..+....+......+|.|.|..|+||||+++.+..... ..-..++.+.-........ ..++...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~-----~~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG-----INQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC-----ceEEEeC--
Confidence 34433333333333344567899999999999999998877651 1111233322111111100 0111111
Q ss_pred ccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcccccc
Q 041248 241 SWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVDLTK 278 (813)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 278 (813)
..........++..++..+=.++++++.+.+....
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 11111244556677788888999999988765443
No 350
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.83 E-value=0.14 Score=48.11 Aligned_cols=124 Identities=21% Similarity=0.220 Sum_probs=68.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE---------------------ecCcc--------------
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAV---------------------VSKDL-------------- 222 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~---------------------~~~~~-------------- 222 (813)
....+.++|+.|.|||||.+.+|.... . =...+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~-p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER-P---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc-C---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 457899999999999999999998762 1 11223321 01111
Q ss_pred -------CHHHH---HHHHHHHcCCCCCc----cCCCCHHHHHHHHHHHhcCCcEEEEEeccc----CcccccccccCCC
Q 041248 223 -------RLEKI---QEDIGKKIGLVDDS----WKSKSVEEKALDIFRSLREKRFVLLLDDIW----ERVDLTKMGIPLS 284 (813)
Q Consensus 223 -------~~~~~---~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~----~~~~~~~~~~~l~ 284 (813)
...++ ..+.++..++.... ..-..-++.-..+.+.+-+++-+++-|.-- ....|+-+. .|.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfe 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFE 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH-HHH
Confidence 11222 22233333332210 011223333445667777888899988652 223343321 111
Q ss_pred CCCCCCcEEEEEcCcccccccC
Q 041248 285 GPKNTTSKVVFTTRFVDVCGSM 306 (813)
Q Consensus 285 ~~~~~~s~ilvTtR~~~v~~~~ 306 (813)
.-+..|..||++|-+..+...+
T Consensus 182 einr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhc
Confidence 2345689999999988875554
No 351
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.81 E-value=0.026 Score=55.72 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|++|+|||||++.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 352
>PRK03839 putative kinase; Provisional
Probab=94.80 E-value=0.023 Score=54.68 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 353
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.80 E-value=0.064 Score=49.39 Aligned_cols=102 Identities=25% Similarity=0.292 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
...+++|+|..|.|||||++.+.... ......+|+.-. ..++... .-..-+...-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHHH
Confidence 45789999999999999999998765 122333333210 0000000 001112222335556
Q ss_pred hcCCcEEEEEecccCccc---ccccccCCCCCCCCCcEEEEEcCcccc
Q 041248 258 LREKRFVLLLDDIWERVD---LTKMGIPLSGPKNTTSKVVFTTRFVDV 302 (813)
Q Consensus 258 l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~s~ilvTtR~~~v 302 (813)
+..++-++++|+.....| ...+...+ ... +..||++|.+.+.
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~--~~til~~th~~~~ 129 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEAL-KEY--PGTVILVSHDRYF 129 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHc--CCEEEEEECCHHH
Confidence 666777999999854322 22222222 111 2457777765544
No 354
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.037 Score=52.84 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998865
No 355
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.79 E-value=0.83 Score=45.58 Aligned_cols=209 Identities=11% Similarity=0.148 Sum_probs=112.1
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEecCc----------cC--
Q 041248 159 TIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLE---SPTSFDCVIWAVVSKD----------LR-- 223 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~----------~~-- 223 (813)
.+.++++....+......++.+-..++|+.|.||-|.+..+.++.=. .+-.-+..-|.+.+.. +.
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35677777777777776667889999999999999887776665410 1122334455443332 10
Q ss_pred ---------HHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEE-EEEecccCc--ccccccccCCCCCCCCCc
Q 041248 224 ---------LEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFV-LLLDDIWER--VDLTKMGIPLSGPKNTTS 291 (813)
Q Consensus 224 ---------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L-lVlDdv~~~--~~~~~~~~~l~~~~~~~s 291 (813)
-..+.++|+++++-..+ .+.-..+.|= +|+-.+++. +....+.... -.-...+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q--------------ie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTM-EkYs~~~ 158 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ--------------IETQGQRPFKVVVINEADELTRDAQHALRRTM-EKYSSNC 158 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc--------------hhhccccceEEEEEechHhhhHHHHHHHHHHH-HHHhcCc
Confidence 11233333333321110 0011224453 444444321 1111111111 1113456
Q ss_pred EEEEEcCccc--ccccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc-hHHHHHHHh-hc
Q 041248 292 KVVFTTRFVD--VCGSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP-LALITIGRA-MA 367 (813)
Q Consensus 292 ~ilvTtR~~~--v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~-l~ 367 (813)
|+|+...+.+ +...-+..-.++++..+++|....+.+..-.+....+ ++++++|+++++|.- .|+-++-.. +.
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 6665333221 1111123346789999999999999998876653333 578999999999864 344333221 11
Q ss_pred CC--------CCHHHHHHHHHHHhch
Q 041248 368 FK--------KTAEEWIHAIEVLRTS 385 (813)
Q Consensus 368 ~~--------~~~~~w~~~~~~l~~~ 385 (813)
.. -..-+|+-+..+....
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHH
Confidence 11 1345899887766554
No 356
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.77 E-value=0.058 Score=48.32 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=28.7
Q ss_pred HHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 166 QLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 166 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.+++.+.+.. ....+|.+.|.-|+||||+++.++...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444433 245699999999999999999999986
No 357
>PRK14974 cell division protein FtsY; Provisional
Probab=94.76 E-value=0.21 Score=52.72 Aligned_cols=90 Identities=20% Similarity=0.192 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccC--HHHHHHHHHHHcCCCCCc-cCCCCHHHHH-HH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLR--LEKIQEDIGKKIGLVDDS-WKSKSVEEKA-LD 253 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 253 (813)
+..+|.++|++|+||||++..++... . ...+ .++.+... .+. ....+...+..++..... ....+....+ ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46799999999999999988888766 2 2233 33344432 222 233455666777653321 1122333322 22
Q ss_pred HHHHhcCCcEEEEEeccc
Q 041248 254 IFRSLREKRFVLLLDDIW 271 (813)
Q Consensus 254 l~~~l~~k~~LlVlDdv~ 271 (813)
+........-++++|-.-
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222222222388888874
No 358
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.75 E-value=0.068 Score=48.90 Aligned_cols=42 Identities=31% Similarity=0.283 Sum_probs=30.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHH
Q 041248 182 IGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQE 229 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (813)
|.++|.+|+|||+||+.+++.. . ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEecccccccccee
Confidence 6799999999999999999876 1 1234456777777666543
No 359
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.11 Score=55.94 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 360
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.71 E-value=1 Score=46.93 Aligned_cols=167 Identities=12% Similarity=0.034 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccc-------CCCCCCEEEEEEe-cCccCHHHHHHHHHHHcCC
Q 041248 167 LEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLE-------SPTSFDCVIWAVV-SKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 167 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~-------~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 237 (813)
++.+.+.+..+. ..+..++|..|.||+++|..+.+.... ...+.+...++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344555555543 466779999999999999998877510 1112222333321 1112222222 23332221
Q ss_pred CCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEE-EcCcccccc-cCCCCcceE
Q 041248 238 VDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVF-TTRFVDVCG-SMEADKKFQ 313 (813)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilv-TtR~~~v~~-~~~~~~~~~ 313 (813)
.. .-.+.+-++|+|++.... ....+...+ -.....+.+|+ |+....+.. .......++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~L-EEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTI-EEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHh-hCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 11 012467788899986432 233333333 22334555655 444444432 234567899
Q ss_pred cCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 314 VACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 314 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
+.++++++..+.+... +. + ++.+..++...+|.--|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~~-----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-NK-----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-CC-----C---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999999887764 21 1 13466677777763345544
No 361
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.71 E-value=0.12 Score=53.94 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCcc---CCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSW---KSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (813)
..+++-|+|+.|+||||||.++..... ..-..++|+.....++. ..++.+|+..+.. .+...++..+..
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q---~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQ---KQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhh---cccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHH
Confidence 357999999999999999999888762 23456889988766554 3455566543321 234456666666
Q ss_pred HHHhcCC-cEEEEEecccC
Q 041248 255 FRSLREK-RFVLLLDDIWE 272 (813)
Q Consensus 255 ~~~l~~k-~~LlVlDdv~~ 272 (813)
...++.. --++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 6666543 34888898853
No 362
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.019 Score=33.52 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=16.8
Q ss_pred cccEEEeccCCcccccccCccccCC
Q 041248 566 SLKVLKMSNCGHVKVLKLPFGMSKL 590 (813)
Q Consensus 566 ~L~~L~l~~~~~~~~~~lp~~i~~L 590 (813)
+|++||+++| .++.+|+++++|
T Consensus 1 ~L~~Ldls~n---~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN---NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS---EESEEGTTTTT-
T ss_pred CccEEECCCC---cCEeCChhhcCC
Confidence 5788999999 888888776653
No 363
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.68 E-value=0.022 Score=49.38 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041248 182 IGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~ 203 (813)
|.|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988776
No 364
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.68 E-value=0.15 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 365
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.65 E-value=0.065 Score=59.19 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEE-EEEecCcc-CHHHHHHHHHHHcCCCCCccCCCCH-----HHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVI-WAVVSKDL-RLEKIQEDIGKKIGLVDDSWKSKSV-----EEK 250 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~ 250 (813)
.-.-..|+|.+|+|||||++.+.+... ..+-++.+ .+-|.+.. .+.++.+.+-..+ ....++.... ...
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeV--VasT~D~p~~~~~~~a~~ 490 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEV--IASTFDRPPSDHTTVAEL 490 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceE--EEECCCCCHHHHHHHHHH
Confidence 445788999999999999999998762 23444443 34454433 2333333221111 0001111111 122
Q ss_pred HHHHHHHh--cCCcEEEEEeccc
Q 041248 251 ALDIFRSL--REKRFVLLLDDIW 271 (813)
Q Consensus 251 ~~~l~~~l--~~k~~LlVlDdv~ 271 (813)
.-.+.+++ .++.+||++|++-
T Consensus 491 ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 491 AIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHcCCCEEEEEeCch
Confidence 22233444 6899999999984
No 366
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.64 E-value=0.029 Score=54.43 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|+|.|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 367
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.63 E-value=0.19 Score=50.36 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
...++.|.|.+|+||||+|.++..... +.. ..+++++. ..+..++.+.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~--e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVST--QLTTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeC--CCCHHHHHHHH-HHhC
Confidence 346999999999999999877666541 122 34566663 33456666665 3444
No 368
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.59 E-value=0.087 Score=56.48 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=37.9
Q ss_pred CcccchhHHHHHHHHHHhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEE--------------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..+..+..++... ....|.++|++|+|||++|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999988888777430 13678999999999999999998876
No 369
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.59 E-value=0.1 Score=57.88 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
...++.|.|.+|+|||||+.+++.... ..-..++|++... +..++... ++.++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~ 132 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEE--SASQIKLR-AERLGL 132 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccc--cHHHHHHH-HHHcCC
Confidence 356999999999999999999988762 2234577877544 33343322 455554
No 370
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.56 E-value=0.037 Score=54.47 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE-------ecCccCHHHH--HHHHHHHcCCCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAV-------VSKDLRLEKI--QEDIGKKIGLVDD 240 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~-------~~~~~~~~~~--~~~i~~~l~~~~~ 240 (813)
+...|.++||+|+||||+.+.++.+. ..+.....++-.. ..-+-++.+. +++..++.++...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 45678899999999999999998887 3333333343332 1222344433 6677787766543
No 371
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.21 Score=52.73 Aligned_cols=95 Identities=22% Similarity=0.331 Sum_probs=57.9
Q ss_pred HHHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCcc--
Q 041248 167 LEQVWRCLVEE--SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSW-- 242 (813)
Q Consensus 167 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-- 242 (813)
+.++-+.|..+ .-.+|.|-|-+|+|||||.-++..+.+ ..- .+.+|+-.+ +..++ +--++.++...+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEE
Confidence 34444445432 457899999999999999999999883 222 677765433 33333 33455666544321
Q ss_pred -CCCCHHHHHHHHHHHhcCCcEEEEEeccc
Q 041248 243 -KSKSVEEKALDIFRSLREKRFVLLLDDIW 271 (813)
Q Consensus 243 -~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 271 (813)
...+.++....+.+ .++-++|+|-+.
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 23344444333333 578899999884
No 372
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.55 E-value=0.071 Score=61.20 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=56.4
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+... ...++..+|..- ...+...+++.++.++|
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 46899998888888777654 4788999999999999999998762 344677788654 44467777777776665
No 373
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.54 E-value=0.024 Score=49.84 Aligned_cols=28 Identities=39% Similarity=0.513 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCE
Q 041248 182 IGLYGMGGVGKTTLLTHINNKFLESPTSFDC 212 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~ 212 (813)
|.|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6789999999999999999976 556643
No 374
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.54 E-value=0.26 Score=52.33 Aligned_cols=88 Identities=23% Similarity=0.193 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
+.++|+++|+.|+||||-...++..+ .....-..+..++...-. ...+-++.-++-++++.. ...+..++...+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 47999999999999986655555554 212233346666654321 233445555666665442 23344444444333
Q ss_pred HhcCCcEEEEEecc
Q 041248 257 SLREKRFVLLLDDI 270 (813)
Q Consensus 257 ~l~~k~~LlVlDdv 270 (813)
. ++.. +|.+|-+
T Consensus 279 l-~~~d-~ILVDTa 290 (407)
T COG1419 279 L-RDCD-VILVDTA 290 (407)
T ss_pred h-hcCC-EEEEeCC
Confidence 2 3333 4444554
No 375
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.53 E-value=0.037 Score=51.04 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|.|.|.+|+||||||+++.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999988
No 376
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.50 E-value=0.12 Score=56.80 Aligned_cols=87 Identities=23% Similarity=0.246 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
.+++.++|++|+||||++..++... ........+..++..... .....+....+.++++.. ...+..+....+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3699999999999999999887765 201222356666654321 112233344444554332 22333444444443
Q ss_pred hcCCcEEEEEecc
Q 041248 258 LREKRFVLLLDDI 270 (813)
Q Consensus 258 l~~k~~LlVlDdv 270 (813)
+. ..=++++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 23 3457788876
No 377
>PRK04040 adenylate kinase; Provisional
Probab=94.48 E-value=0.034 Score=53.69 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 378
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.049 Score=52.32 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998764
No 379
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.46 E-value=0.066 Score=55.02 Aligned_cols=88 Identities=22% Similarity=0.311 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCH
Q 041248 168 EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSV 247 (813)
Q Consensus 168 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 247 (813)
..+++.+... .+-|.++|+.|+|||++++...... . ...| ...-++.+...+...++.-+-..+.....
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~------- 91 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG------- 91 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT-------
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC-------
Confidence 4455655554 4567899999999999999988765 1 1222 23345555544444433322111110000
Q ss_pred HHHHHHHHHHhcCCcEEEEEeccc
Q 041248 248 EEKALDIFRSLREKRFVLLLDDIW 271 (813)
Q Consensus 248 ~~~~~~l~~~l~~k~~LlVlDdv~ 271 (813)
....--.+|+.++.+||+.
T Consensus 92 -----~~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 92 -----RVYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp -----EEEEEESSSEEEEEEETTT
T ss_pred -----CCCCCCCCcEEEEEecccC
Confidence 0000013688899999984
No 380
>PRK05973 replicative DNA helicase; Provisional
Probab=94.45 E-value=0.25 Score=49.25 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDI 231 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (813)
...++.|.|.+|+|||+++.++..... ..-..+++++...+ ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 456899999999999999999877652 22345666665443 45555554
No 381
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.45 E-value=0.066 Score=51.91 Aligned_cols=42 Identities=33% Similarity=0.488 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
.|+|.|-||+||||+|..+..... .++.| .+.-|....++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~-~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL-SKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH-hcCCc-eEEEEeCCCCCCh
Confidence 689999999999999999666652 22223 3455666666553
No 382
>PRK00625 shikimate kinase; Provisional
Probab=94.43 E-value=0.035 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.++|++|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 383
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.43 E-value=0.15 Score=47.97 Aligned_cols=117 Identities=18% Similarity=0.122 Sum_probs=59.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEE--EEEEecCccCHHHHHHHHHHHcCCC--CC--ccCCCCHH----
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCV--IWAVVSKDLRLEKIQEDIGKKIGLV--DD--SWKSKSVE---- 248 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~--~wv~~~~~~~~~~~~~~i~~~l~~~--~~--~~~~~~~~---- 248 (813)
...|-|++..|.||||.|..++-+.. ...+.+. =|+.-.........+..+ .+... .. .+...+.+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 46888999999999999988877652 2333322 133322223333344332 11100 00 01111111
Q ss_pred ---HHHHHHHHHhcC-CcEEEEEecccC-----cccccccccCCCCCCCCCcEEEEEcCcc
Q 041248 249 ---EKALDIFRSLRE-KRFVLLLDDIWE-----RVDLTKMGIPLSGPKNTTSKVVFTTRFV 300 (813)
Q Consensus 249 ---~~~~~l~~~l~~-k~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~s~ilvTtR~~ 300 (813)
+.....++.+.. .-=++|||.+-. .-+.+++...+ .....+.-||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL-~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEAL-QERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHH-HhCCCCCEEEEECCCC
Confidence 122223344443 455999999842 22233333333 4445577999999975
No 384
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.43 E-value=0.12 Score=54.51 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041248 182 IGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+++.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998876
No 385
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.4 Score=53.94 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=89.3
Q ss_pred CcccchhHHHHHHH---HHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVW---RCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~---~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.++.|.|+.++++. +.|.+. -.+=|..+|++|.|||.||++++... . -.|- ..|...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~--VPFf-----~iSGS~--- 218 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-G--VPFF-----SISGSD--- 218 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-C--CCce-----eccchh---
Confidence 45688887666555 455432 24567899999999999999999986 2 2221 111111
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc------------cc----ccccccCCCCCCC-
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER------------VD----LTKMGIPLSGPKN- 288 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~----~~~~~~~l~~~~~- 288 (813)
..+.+ .+......-..+.+..++-++++++|.++.. .+ +.++....-....
T Consensus 219 -----FVemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 219 -----FVEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred -----hhhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 00100 1111122223344455667899999988532 11 2222222201111
Q ss_pred CCcEEEEEcCccccc-----ccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchH
Q 041248 289 TTSKVVFTTRFVDVC-----GSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLA 358 (813)
Q Consensus 289 ~~s~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (813)
.|..|+-.|-..+|. +.-.-++.+.++.-+-..-.++++-++.......+-++. .|++.+-|.-.|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCcccc
Confidence 232333333333442 222344566677666677777777665444323223322 377777776543
No 386
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.15 Score=47.73 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+.|.|+.|+|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHccc
Confidence 34678899999999999999998765
No 387
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.39 E-value=0.2 Score=50.75 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccc-CCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCC-----ccCCCCHHH-
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLE-SPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDD-----SWKSKSVEE- 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 249 (813)
.-..++|.|-.|+|||+|+..+.++... .+..-+.++++-+.+.. ...+++..+.+.-.+... ..+......
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4467899999999999999998876510 12235778888887764 456666666554222110 001111111
Q ss_pred ----HHHHHHHHh---cCCcEEEEEecccC
Q 041248 250 ----KALDIFRSL---REKRFVLLLDDIWE 272 (813)
Q Consensus 250 ----~~~~l~~~l---~~k~~LlVlDdv~~ 272 (813)
..-.+.+++ .++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 112234444 37899999999853
No 388
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.36 E-value=0.11 Score=60.43 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..-..|+|+|..|+|||||++.+..-+
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355789999999999999999987765
No 389
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.32 E-value=0.15 Score=58.55 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+....++|+|+.|+|||||++.+..-.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998765
No 390
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.31 E-value=0.22 Score=54.06 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC-ccCHHHHHHHHHHHcCCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK-DLRLEKIQEDIGKKIGLVD 239 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 239 (813)
...+|+++|+.|+||||++..+.... ......+.+..+.... .....+.+....+.++++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 34799999999999999999887754 1112223344444332 1223334555666666543
No 391
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.22 Score=56.46 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=59.6
Q ss_pred CcccchhHHHHHHHHHHhc---------C---CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE---------E---SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.++=|-++.+.+|.+-+.- . +..=|.+||++|.|||-+|++|+.+. . .-|++|-.+.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGPE--- 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGPE--- 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCHH---
Confidence 3556778888888876642 1 34568899999999999999999886 1 3345554431
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWE 272 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 272 (813)
++.. ..+.+++...+.+.+.-..++++|.+|.+++
T Consensus 741 -LLNM-----------YVGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 -LLNM-----------YVGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -HHHH-----------HhcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1111 0223334444444455556999999999975
No 392
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.30 E-value=0.081 Score=52.52 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=36.0
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHH
Q 041248 167 LEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKI 227 (813)
Q Consensus 167 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (813)
..++++.+.. ++..+|+|.|+||+|||||.-.+...+ ...++--.++-|..|.+++--.+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcc
Confidence 4455555543 467899999999999999999998887 32333234555555656554333
No 393
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.28 E-value=0.13 Score=50.47 Aligned_cols=89 Identities=26% Similarity=0.394 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc-cCHHHHHHHHHHHcCCCC-----CccCCCCHHHH-
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD-LRLEKIQEDIGKKIGLVD-----DSWKSKSVEEK- 250 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~- 250 (813)
.-..++|.|.+|+|||+|+..+.+.. .-+.++++.+++. ..+.++.+++...-.... ...+.......
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 34678999999999999999999986 2344577777665 456666666644311100 00011111111
Q ss_pred ----HHHHHHHh--cCCcEEEEEeccc
Q 041248 251 ----ALDIFRSL--REKRFVLLLDDIW 271 (813)
Q Consensus 251 ----~~~l~~~l--~~k~~LlVlDdv~ 271 (813)
.-.+.+++ +++.+|+++||+-
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhccchhhhHHHhhcCCceeehhhhhH
Confidence 11122222 6899999999983
No 394
>PRK05439 pantothenate kinase; Provisional
Probab=94.28 E-value=0.33 Score=50.51 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+..-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999988765
No 395
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.27 E-value=0.063 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 396
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.26 E-value=0.15 Score=58.84 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=50.6
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
+.++|.++.++.+...+... +.+.++|++|+||||+|+.+.+... ...|...+++ .....+...+++.++.+++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~-~n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVY-PNPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEE-eCCCCCchHHHHHHHHhhc
Confidence 46799998888877777654 3566999999999999999998772 2233333332 2333345566777776665
No 397
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.069 Score=47.68 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=41.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
.+-|.|.|.+|+||||+|.+++... .| -|+++|.-..-..++...-+... ...-+.+.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHHHH
Confidence 4568899999999999999998654 22 35666543322222222211111 12345556666666666
Q ss_pred cCCc
Q 041248 259 REKR 262 (813)
Q Consensus 259 ~~k~ 262 (813)
.+..
T Consensus 74 ~~Gg 77 (176)
T KOG3347|consen 74 IEGG 77 (176)
T ss_pred hcCC
Confidence 5433
No 398
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.20 E-value=0.075 Score=50.22 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=32.9
Q ss_pred ccchhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 160 IVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 160 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++|....+.++.+.+.. .....|.|+|..|+||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46778888888877653 344677799999999999999998864
No 399
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.19 E-value=0.15 Score=55.61 Aligned_cols=89 Identities=24% Similarity=0.273 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHc-----CCCCCccCCCCHHH---
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKI-----GLVDDSWKSKSVEE--- 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~--- 249 (813)
.-..++|+|..|+|||||++.+.... .....+++..-....++.++....+... +..... +......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs-d~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATS-DESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC-CCCHHHHHHH
Confidence 44689999999999999999887653 2223444443323344544444333322 111111 1111111
Q ss_pred --HHHHHHHHh--cCCcEEEEEeccc
Q 041248 250 --KALDIFRSL--REKRFVLLLDDIW 271 (813)
Q Consensus 250 --~~~~l~~~l--~~k~~LlVlDdv~ 271 (813)
..-.+.+++ +++.+|+++||+-
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchH
Confidence 112233333 5899999999984
No 400
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.19 E-value=2.4 Score=45.51 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=39.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc--CHHHHHHHHHHHcCCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL--RLEKIQEDIGKKIGLVD 239 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~ 239 (813)
...+|-.+|.-|.||||.|..+++.+. . ..+. +.-|+ ...+ ..-+-++.++++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk-k-~~~k-vllVa-aD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK-K-KGKK-VLLVA-ADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH-H-cCCc-eEEEe-cccCChHHHHHHHHHHHHcCCce
Confidence 467899999999999999999988882 2 2222 22232 2333 33455778888887654
No 401
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.17 E-value=0.17 Score=56.04 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=34.1
Q ss_pred HHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC
Q 041248 168 EQVWRCLVEE--SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK 220 (813)
Q Consensus 168 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 220 (813)
..+-+.|..+ ...++.|.|.+|+|||||+.++...... .-..++|++..+
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EE 132 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEE 132 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcC
Confidence 3444444332 4578999999999999999999877621 223577776543
No 402
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.059 Score=50.50 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
.-.+++|+|..|.|||||++.+.... ......+++........ ........++.... -..-+...-.+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q---lS~G~~~r~~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ---LSGGQRQRVALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEee---CCHHHHHHHHHHHH
Confidence 34799999999999999999998865 22344444432111110 00111122221110 11122233335556
Q ss_pred hcCCcEEEEEecccCccc---ccccccCCCCCCCCCcEEEEEcCccccc
Q 041248 258 LREKRFVLLLDDIWERVD---LTKMGIPLSGPKNTTSKVVFTTRFVDVC 303 (813)
Q Consensus 258 l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~s~ilvTtR~~~v~ 303 (813)
+...+-++++|+.....| ...+...+......+..++++|-+....
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 666678999999864322 2222111101111245677777665543
No 403
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.17 E-value=0.087 Score=57.06 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCc----cCCCCHHHH--
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDS----WKSKSVEEK-- 250 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~-- 250 (813)
....++|+|..|+|||||++.+.+.. ..+.++.+-+++.. .+.++...++..-++...- ....+....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45689999999999999999988653 23566666666654 3455666655442221100 011111111
Q ss_pred ----HHHHHHHh--cCCcEEEEEecccC
Q 041248 251 ----ALDIFRSL--REKRFVLLLDDIWE 272 (813)
Q Consensus 251 ----~~~l~~~l--~~k~~LlVlDdv~~ 272 (813)
+-.+.+++ +++.+|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 12233444 58999999999843
No 404
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.26 Score=48.42 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=34.9
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++=|=.++++++.+...- +..+-|.++|++|.|||-+|++|+|+-
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 344566777887776531 356778899999999999999999975
No 405
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.11 E-value=0.1 Score=45.79 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=32.8
Q ss_pred cccchhHHHHHHHHHHh----c---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLV----E---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|-.-..+.+++.+. + ++.-|++.+|..|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45666655555555554 2 356788999999999999988887773
No 406
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.10 E-value=0.067 Score=52.93 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041248 182 IGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~ 203 (813)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998765
No 407
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.10 E-value=0.074 Score=51.32 Aligned_cols=37 Identities=32% Similarity=0.446 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVV 218 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 218 (813)
.++|.|+|+.|+|||||++.+.... ...|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999987 567765555543
No 408
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.05 E-value=0.074 Score=56.90 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
....|.|.|+.|+||||+++.+.+.. .......++. +..+.. -..... ..+ ..... ...........++..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E--~~~~~~-~~~-i~q~e-vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIE--YVHRNK-RSL-INQRE-VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChh--hhccCc-cce-EEccc-cCCCCcCHHHHHHHh
Confidence 45789999999999999999988765 2233344443 222111 100000 000 00000 011112344556777
Q ss_pred hcCCcEEEEEecccCcccccc
Q 041248 258 LREKRFVLLLDDIWERVDLTK 278 (813)
Q Consensus 258 l~~k~~LlVlDdv~~~~~~~~ 278 (813)
++..+=.|++|.+.+...+..
T Consensus 192 lr~~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVEL 212 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHH
Confidence 888899999999987665543
No 409
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.05 E-value=0.16 Score=59.14 Aligned_cols=86 Identities=21% Similarity=0.203 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS---WKSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (813)
..+++-|+|.+|+||||||.+++.... ..-..++|+.....++. ..++++++..+. ....+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 467889999999999999988766541 22356789987776663 367777765432 1233445555555
Q ss_pred HHHhc-CCcEEEEEeccc
Q 041248 255 FRSLR-EKRFVLLLDDIW 271 (813)
Q Consensus 255 ~~~l~-~k~~LlVlDdv~ 271 (813)
...++ ++.-++|+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 466789999984
No 410
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.04 E-value=0.095 Score=52.71 Aligned_cols=66 Identities=29% Similarity=0.349 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccc----CCCCCCEEEEEEecCccCHHHHHHHHHH
Q 041248 166 QLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLE----SPTSFDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 166 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~----~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
+.+.+...+... .+..|+|++|+||||++..+...... .....+..+-++...+..++.++..+.+
T Consensus 6 Q~~Ai~~~~~~~--~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 6 QREAIQSALSSN--GITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHCTSS--E-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC--CCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 344444444322 27899999999999877766665411 0123333444444444445555555443
No 411
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.04 E-value=0.048 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|.++|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 412
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.02 E-value=0.037 Score=54.19 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|+|.|..|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 413
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.01 E-value=0.039 Score=52.92 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 414
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.00 E-value=0.13 Score=52.63 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.|.|.|.+|+||||+|+++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999887
No 415
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.00 E-value=0.051 Score=54.54 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC-CCEEEEEEecCccCHHHHHHHHHHHcCCCCCc-------------cC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTS-FDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS-------------WK 243 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~~ 243 (813)
...++.|.|.+|+|||+|+.++..... .. -+.++|++...+ ...+.+.+. .++..... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 457999999999999999999775541 22 345778876554 344444433 34321100 00
Q ss_pred -----CCCHHHHHHHHHHHhcC-CcEEEEEeccc
Q 041248 244 -----SKSVEEKALDIFRSLRE-KRFVLLLDDIW 271 (813)
Q Consensus 244 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 271 (813)
..+.+.....+.+.++. +...+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34566777777766654 45788999873
No 416
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.97 E-value=0.22 Score=54.27 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCC-----ccCCCCHHH--
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDD-----SWKSKSVEE-- 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 249 (813)
....++|+|..|+|||||++.+++.. ..+.++++-+++.. .+.++..+.+..-++... ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45788999999999999999998765 22455556665544 344555555443332110 001111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEeccc
Q 041248 250 ---KALDIFRSL--REKRFVLLLDDIW 271 (813)
Q Consensus 250 ---~~~~l~~~l--~~k~~LlVlDdv~ 271 (813)
..-.+.+++ +++.+|+++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 112233444 5899999999994
No 417
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.95 E-value=0.093 Score=52.88 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=42.9
Q ss_pred HHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHH
Q 041248 168 EQVWRCLV--EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQED 230 (813)
Q Consensus 168 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (813)
.+++..+. .++..+|+|.|.||+|||||.-.+...+ ....+--.++-|..|.+++--.++-+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccccc
Confidence 34444443 2467799999999999999999988887 44444445666777777765444433
No 418
>PF13245 AAA_19: Part of AAA domain
Probab=93.95 E-value=0.13 Score=41.15 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=18.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.+++.|.|++|.|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999996555544443
No 419
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.90 E-value=0.05 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 420
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.88 E-value=0.12 Score=56.58 Aligned_cols=92 Identities=21% Similarity=0.288 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCc----cCCCCHHH---
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDS----WKSKSVEE--- 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 249 (813)
.-..++|.|.+|+|||||+.++.+... +.+-+.++++-+++.. ...++...+...-.+...- ....+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 456799999999999999999888762 2356778887776653 4556666665432221100 01111111
Q ss_pred ---HHHHHHHHh---cCCcEEEEEeccc
Q 041248 250 ---KALDIFRSL---REKRFVLLLDDIW 271 (813)
Q Consensus 250 ---~~~~l~~~l---~~k~~LlVlDdv~ 271 (813)
..-.+.+++ .++.+|+++|++-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 122344554 3899999999994
No 421
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.87 E-value=0.073 Score=54.68 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..+++.|+|.+|+|||+++.++.... ......++||+..+. ...+...+.+ ++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 56899999999999999999999887 344788999987764 3444444433 44
No 422
>PRK14528 adenylate kinase; Provisional
Probab=93.87 E-value=0.088 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.|.|.|++|+||||+|+.+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998765
No 423
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.84 E-value=0.046 Score=50.42 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 041248 181 IIGLYGMGGVGKTTLLTHIN 200 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~ 200 (813)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999987
No 424
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.82 E-value=0.27 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|.++|..|+||||++..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988766
No 425
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.78 E-value=0.085 Score=48.15 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK 220 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 220 (813)
++|.|+|..|+|||||++.+.+... ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999882 24455555555444
No 426
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.77 E-value=0.36 Score=50.80 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 427
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.77 E-value=0.058 Score=51.63 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 428
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.76 E-value=0.099 Score=54.62 Aligned_cols=49 Identities=27% Similarity=0.270 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQED 230 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (813)
.+++.+.|.||+||||+|.+.+-..+ .....++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998666552 22244677776666565555443
No 429
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.75 E-value=0.047 Score=50.40 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|.|.|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 430
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.74 E-value=0.25 Score=54.64 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc-cCHHHHHHHHHHHcCCC
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD-LRLEKIQEDIGKKIGLV 238 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 238 (813)
..+++++|+.|+||||++..++... ........+..+..... ....+-+....+.+++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 4799999999999999999998765 21221223455554321 12334455555665543
No 431
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.73 E-value=0.32 Score=54.75 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=56.5
Q ss_pred HHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc----
Q 041248 168 EQVWRCLVEE--SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS---- 241 (813)
Q Consensus 168 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 241 (813)
..+-+.|..+ .-.++.|.|.+|+|||||+.++..... ..-..+++++..+ +..++...+ +.++.....
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 3444445432 457899999999999999999988762 2334566666544 455555554 455543211
Q ss_pred ---------cCCCCHHHHHHHHHHHhcC-CcEEEEEecc
Q 041248 242 ---------WKSKSVEEKALDIFRSLRE-KRFVLLLDDI 270 (813)
Q Consensus 242 ---------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 270 (813)
......++.+..+.+.+.. +.-.+|+|.+
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0112234455555555533 3445666665
No 432
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.71 E-value=0.082 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998765
No 433
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.70 E-value=0.13 Score=55.90 Aligned_cols=91 Identities=23% Similarity=0.267 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCC-----ccCCCCHHH---
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDD-----SWKSKSVEE--- 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~--- 249 (813)
....++|+|..|+|||||++.+.... .....++...-.+...+.++....+..-++... ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 45689999999999999999888764 122223322222333455565555444332111 001111111
Q ss_pred --HHHHHHHHh--cCCcEEEEEecccC
Q 041248 250 --KALDIFRSL--REKRFVLLLDDIWE 272 (813)
Q Consensus 250 --~~~~l~~~l--~~k~~LlVlDdv~~ 272 (813)
..-.+.+++ +++.+|+++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112234444 57999999999843
No 434
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.70 E-value=0.058 Score=47.71 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041248 182 IGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~ 203 (813)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998875
No 435
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.69 E-value=0.049 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 436
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.67 E-value=0.068 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|.+|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999876
No 437
>PRK14529 adenylate kinase; Provisional
Probab=93.66 E-value=0.23 Score=49.05 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=45.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE--EEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKFLESPTSFDC--VIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL 258 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (813)
.|.|.|++|+||||+|+.++..+ .. .+.+. .+.-.+..........++++..-. ..+.+.....+.+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~-~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G~-------lvpdei~~~lv~~~l 72 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY-DL-AHIESGAIFREHIGGGTELGKKAKEYIDRGD-------LVPDDITIPMILETL 72 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CC-CCcccchhhhhhccCCChHHHHHHHHHhccC-------cchHHHHHHHHHHHH
Confidence 37889999999999999998877 21 22211 111112222233344444443322 223334444555555
Q ss_pred cCC-cEEEEEecccC
Q 041248 259 REK-RFVLLLDDIWE 272 (813)
Q Consensus 259 ~~k-~~LlVlDdv~~ 272 (813)
.+. ..=+|||++-.
T Consensus 73 ~~~~~~g~iLDGfPR 87 (223)
T PRK14529 73 KQDGKNGWLLDGFPR 87 (223)
T ss_pred hccCCCcEEEeCCCC
Confidence 331 34588999853
No 438
>PRK13947 shikimate kinase; Provisional
Probab=93.65 E-value=0.058 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 439
>PRK13949 shikimate kinase; Provisional
Probab=93.64 E-value=0.06 Score=51.04 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 440
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.48 Score=49.47 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=31.4
Q ss_pred ccchhHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 160 IVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 160 ~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.|-++.++-|.+...- ..=+-|..+|++|.|||-||++|+...
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 45555555555554421 133568899999999999999999986
No 441
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.63 E-value=0.3 Score=51.19 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC-ccCHHHHHHHHHHHcCCCCC-----ccCCCCHHH--
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK-DLRLEKIQEDIGKKIGLVDD-----SWKSKSVEE-- 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 249 (813)
....++|+|..|+|||||++.+.+.. . -+..+...+.. ..++.++.......-++... ..+......
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 45688999999999999999888765 1 23333344433 34556666665554332110 011111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEeccc
Q 041248 250 ---KALDIFRSL--REKRFVLLLDDIW 271 (813)
Q Consensus 250 ---~~~~l~~~l--~~k~~LlVlDdv~ 271 (813)
..-.+.+++ +++.+|+++||+-
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 112223333 5899999999984
No 442
>PRK08149 ATP synthase SpaL; Validated
Probab=93.60 E-value=0.29 Score=53.26 Aligned_cols=89 Identities=18% Similarity=0.269 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc-cCHHHHHHHHHHHcCCCC-----CccCCCCHH---
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD-LRLEKIQEDIGKKIGLVD-----DSWKSKSVE--- 248 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 248 (813)
.-..++|+|..|+|||||++.++... ..+.++...+... .++.++..+......... ...+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45689999999999999999988754 2234444444433 345566666665432211 001111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEeccc
Q 041248 249 --EKALDIFRSL--REKRFVLLLDDIW 271 (813)
Q Consensus 249 --~~~~~l~~~l--~~k~~LlVlDdv~ 271 (813)
.....+.+++ +++++|+++||+-
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 1122233333 5899999999994
No 443
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.57 E-value=0.053 Score=29.30 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=5.6
Q ss_pred CCCEEeecCCCCcccc
Q 041248 592 SLQLLDISHAGIRELP 607 (813)
Q Consensus 592 ~L~~L~l~~~~i~~lp 607 (813)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 444
>PRK05922 type III secretion system ATPase; Validated
Probab=93.56 E-value=0.17 Score=54.94 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC-ccCHHHHHHHHHHHcCCCCCc-----cCCCCHHH--
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK-DLRLEKIQEDIGKKIGLVDDS-----WKSKSVEE-- 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~-- 249 (813)
....++|+|..|+|||||++.+.+.. ..+....+.+++ .......+.+..........- .+......
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 45679999999999999999998764 123333333333 223445555554433221110 01111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEecccC
Q 041248 250 ---KALDIFRSL--REKRFVLLLDDIWE 272 (813)
Q Consensus 250 ---~~~~l~~~l--~~k~~LlVlDdv~~ 272 (813)
..-.+.+++ +++++|+++||+-.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122233444 58999999999943
No 445
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.55 E-value=0.16 Score=52.24 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=40.3
Q ss_pred CCcccchhHHHHH---HHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC
Q 041248 157 EPTIVGLQSQLEQ---VWRCLVEE--SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFD 211 (813)
Q Consensus 157 ~~~~vGr~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~ 211 (813)
...+||..+..+. +++++.++ .-+.|.|+|++|.|||+||-.+.+.. ...-+|-
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCce
Confidence 4578997665443 56666654 45789999999999999999999988 4444553
No 446
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.51 E-value=0.087 Score=51.96 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=26.9
Q ss_pred HHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 173 CLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 173 ~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+...+.++|+++|..|+|||||..++.+..
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999999998875
No 447
>PRK15453 phosphoribulokinase; Provisional
Probab=93.50 E-value=0.4 Score=48.69 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|.|.+|+||||+|+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 448
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.083 Score=61.00 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=87.1
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC----CEEEEEEecCccCHHHHHHHHHHH
Q 041248 159 TIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSF----DCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
.++||++++.++++.|......--.++|.+|+|||+++.-++.+.. ...-. +..++. . ++. .+...
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv-~g~VP~~L~~~~i~s-L----D~g----~LvAG 240 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV-NGDVPESLKDKRIYS-L----DLG----SLVAG 240 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh-cCCCCHHHcCCEEEE-e----cHH----HHhcc
Confidence 4699999999999999865444456789999999999888877761 11111 111111 0 000 11111
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHhc-CCcEEEEEecccCcc-------cccccccCCCCCCCCC--cEEEEEcCcccc--
Q 041248 235 IGLVDDSWKSKSVEEKALDIFRSLR-EKRFVLLLDDIWERV-------DLTKMGIPLSGPKNTT--SKVVFTTRFVDV-- 302 (813)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~-------~~~~~~~~l~~~~~~~--s~ilvTtR~~~v-- 302 (813)
.. -....+++.+.+.+.++ .++.++.+|.+.... .--+....+.|.-..| -.|=.||-++.-
T Consensus 241 ak------yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 241 AK------YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred cc------ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 11 12345566665555554 458999999986421 1011111121222233 234456654432
Q ss_pred ----cccCCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 303 ----CGSMEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 303 ----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
+........+.++.-+.+++..++....
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1111234678888889999888887654
No 449
>PRK14531 adenylate kinase; Provisional
Probab=93.50 E-value=0.12 Score=49.88 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..|.|.|++|+||||+++.+...+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 450
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.49 E-value=0.056 Score=51.87 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 451
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.49 E-value=0.11 Score=54.86 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=38.4
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+||.+..+..+.-.+.+....-|.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3579999999888777766666778899999999999999997655
No 452
>PHA02244 ATPase-like protein
Probab=93.43 E-value=0.15 Score=53.89 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=29.9
Q ss_pred CcccchhHHH----HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQL----EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~----~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|..... ..+..++.. ..-|.|+|++|+|||+||+++++..
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~--~~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNA--NIPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3456644433 344444433 2357789999999999999999875
No 453
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=0.24 Score=47.89 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=59.9
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHH-----HHHHHHHcCCCCCccCC
Q 041248 170 VWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKI-----QEDIGKKIGLVDDSWKS 244 (813)
Q Consensus 170 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~-----~~~i~~~l~~~~~~~~~ 244 (813)
++..+-+.+..-..|.|++|+|||||.+.++.-.+.....|-..--+-+.....+..- +..+...+.+. +.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVl----d~ 203 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVL----DP 203 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhc----cc
Confidence 5555555555557899999999999999988876333334433211112111111100 01111111110 11
Q ss_pred CCHH-HHHHHHHHHhcCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcC
Q 041248 245 KSVE-EKALDIFRSLREKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTR 298 (813)
Q Consensus 245 ~~~~-~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR 298 (813)
.... .....++ ...+=++|+|.+-...+-..+...+ ..|.+++.|.-
T Consensus 204 cpk~~gmmmaIr---sm~PEViIvDEIGt~~d~~A~~ta~----~~GVkli~TaH 251 (308)
T COG3854 204 CPKAEGMMMAIR---SMSPEVIIVDEIGTEEDALAILTAL----HAGVKLITTAH 251 (308)
T ss_pred chHHHHHHHHHH---hcCCcEEEEeccccHHHHHHHHHHH----hcCcEEEEeec
Confidence 1111 1112222 2356689999998777666554444 45677776664
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.39 E-value=0.077 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 455
>PRK14530 adenylate kinase; Provisional
Probab=93.39 E-value=0.065 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 456
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.38 E-value=0.41 Score=52.53 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhcccC-----CCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc------cCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLL-THINNKFLES-----PTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS------WKSK 245 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~ 245 (813)
.-..++|.|..|+|||+|| ..+.+.. .. ...-+.++++.+++..+...-+.+.+++-+..... .+..
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 4457889999999999997 5556653 11 12445788888888765443344455544421110 0111
Q ss_pred CHHH-----HHHHHHHHh--cCCcEEEEEecccC
Q 041248 246 SVEE-----KALDIFRSL--REKRFVLLLDDIWE 272 (813)
Q Consensus 246 ~~~~-----~~~~l~~~l--~~k~~LlVlDdv~~ 272 (813)
...+ ..-.+.+++ +++.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1111 111223333 58999999999953
No 457
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.36 E-value=0.07 Score=48.59 Aligned_cols=23 Identities=48% Similarity=0.748 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 458
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.36 E-value=0.16 Score=54.83 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 167 LEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+.+++.+.......+.|.|.||+|||++.+.+.+..
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 3445555555667889999999999999999999887
No 459
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.35 E-value=0.08 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 460
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.34 E-value=0.12 Score=47.98 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 166 QLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 166 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+++|.+.+.+ ++++++|..|+|||||+..+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 36677777743 799999999999999999998864
No 461
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.31 E-value=0.13 Score=53.60 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=41.0
Q ss_pred CcccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..|+|.++.++++++.+.. ...+++.++|+-|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999998863 367899999999999999999998876
No 462
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.31 E-value=0.3 Score=53.38 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCC-----ccCCCCHHH--
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDD-----SWKSKSVEE-- 249 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 249 (813)
..-..++|.|..|+|||||++.+.... . .-..+++..-.+...+.++...+...-++... ..+......
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-Q---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-C---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 355789999999999999999998764 1 11234444433444566666666544322111 001111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEecccC
Q 041248 250 ---KALDIFRSL--REKRFVLLLDDIWE 272 (813)
Q Consensus 250 ---~~~~l~~~l--~~k~~LlVlDdv~~ 272 (813)
..-.+.+++ +++.+|+++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122233444 58999999999843
No 463
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.27 E-value=0.14 Score=58.14 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=38.2
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
..++|.+..++.+...+......-|.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999988776655667889999999999999999764
No 464
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.26 E-value=0.067 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++|+|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 465
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.26 E-value=0.33 Score=56.52 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccC--HHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLR--LEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
.++|+++|+.|+||||++..++... ........+..++... +. ..+.++...+.+++... ...+..+....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~- 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA- 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-
Confidence 4799999999999999999988765 1112223455555432 32 34556666666665432 2234444443333
Q ss_pred HhcCCcEEEEEeccc
Q 041248 257 SLREKRFVLLLDDIW 271 (813)
Q Consensus 257 ~l~~k~~LlVlDdv~ 271 (813)
.+.++. ++++|-.-
T Consensus 260 ~~~~~D-~VLIDTAG 273 (767)
T PRK14723 260 ALGDKH-LVLIDTVG 273 (767)
T ss_pred HhcCCC-EEEEeCCC
Confidence 344443 66667653
No 466
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.25 E-value=0.092 Score=54.97 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccC
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLR 223 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 223 (813)
+++.+.|-||+||||+|...+-..++ ++ ..+.-++.....+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G--~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RG--KRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TT--S-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CC--CCeeEeecCCCcc
Confidence 68899999999999999887776632 11 2355555444333
No 467
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.18 E-value=0.062 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINN 201 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~ 201 (813)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 468
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.16 E-value=0.083 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|.|+|+.|+||||+++.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3579999999999999999999875
No 469
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.15 E-value=0.29 Score=53.55 Aligned_cols=92 Identities=21% Similarity=0.315 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCc----cCCCCHHH---
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDS----WKSKSVEE--- 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 249 (813)
.-..++|.|..|+|||||+.++..... ..+-+.++++-+++.. .+.+++.++...-.+...- ....+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999999999877652 1222467777776654 4566666666532221100 01111111
Q ss_pred ---HHHHHHHHh---cCCcEEEEEeccc
Q 041248 250 ---KALDIFRSL---REKRFVLLLDDIW 271 (813)
Q Consensus 250 ---~~~~l~~~l---~~k~~LlVlDdv~ 271 (813)
..-.+.+++ +++.+|+++|++-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 122344554 6799999999994
No 470
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.15 E-value=0.4 Score=49.61 Aligned_cols=53 Identities=19% Similarity=0.095 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
...++.|.|.+|+||||++.+++.... ..+-..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 346888999999999999999887752 22234678887654 345555555443
No 471
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.13 E-value=0.12 Score=54.60 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=36.6
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+.+-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4679999988887755544444568999999999999999987754
No 472
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.09 E-value=0.076 Score=49.51 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041248 182 IGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~ 203 (813)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998875
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.08 E-value=0.09 Score=50.86 Aligned_cols=36 Identities=31% Similarity=0.207 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 167 LEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++...... ....+.|+|..|+||||+++.+....
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3334443333 34789999999999999999988765
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.08 E-value=0.083 Score=52.05 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|+.|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998875
No 475
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.08 E-value=0.076 Score=50.16 Aligned_cols=22 Identities=45% Similarity=0.609 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041248 182 IGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~ 203 (813)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998877
No 476
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.07 E-value=0.23 Score=48.37 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|.|..|.|||||.+.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998753
No 477
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.04 E-value=0.16 Score=53.14 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=34.0
Q ss_pred CcccchhHHHHH---HHHHHhcCC--ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQ---VWRCLVEES--VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~---l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+||..+..+. +++++.+.+ -+.|.+.|++|.|||+||..+.+..
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 578998765544 556666543 5889999999999999999999998
No 478
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.04 E-value=0.067 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041248 182 IGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~ 203 (813)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 479
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.03 E-value=0.098 Score=50.61 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHH
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQED 230 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (813)
++.|.|.+|+|||+||.++..... ..-..++|++... +..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 367899999999999999877752 2234577876544 34444443
No 480
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.01 E-value=0.37 Score=48.91 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCEE-EEEEecCcc-CHHHHHHHHHHHcCCCCC-----ccCCCCHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLL-THINNKFLESPTSFDCV-IWAVVSKDL-RLEKIQEDIGKKIGLVDD-----SWKSKSVEE 249 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~ 249 (813)
.-..++|.|..|+|||+|| ..+.+.. .-+.+ +++.+.+.. ...++...+.+.-..... ..+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3467899999999999996 5555532 23444 566666653 456666666543221110 011111111
Q ss_pred -----HHHHHHHHh--cCCcEEEEEecccC
Q 041248 250 -----KALDIFRSL--REKRFVLLLDDIWE 272 (813)
Q Consensus 250 -----~~~~l~~~l--~~k~~LlVlDdv~~ 272 (813)
..-.+.+++ +++.+|+++||+-.
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 112222333 58999999999854
No 481
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.97 E-value=0.24 Score=52.77 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=44.3
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHH
Q 041248 159 TIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKI 227 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (813)
.++|++..+..+...+..+ +-+.+.|.+|+|||+||+.++... .. ..+++.+.......++
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~---~~~~i~~t~~l~p~d~ 85 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GL---PFVRIQCTPDLLPSDL 85 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CC---CeEEEecCCCCCHHHh
Confidence 4789888888877766544 568899999999999999999987 22 2345555555555444
No 482
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.96 E-value=0.092 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHIN 200 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~ 200 (813)
....++|+|+.|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34789999999999999999875
No 483
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.95 E-value=0.16 Score=49.47 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=27.0
Q ss_pred HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 169 QVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.+..+...+.+++.|.|.+|+||||+++.+....
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 33444444455789999999999999999988776
No 484
>PRK13948 shikimate kinase; Provisional
Probab=92.92 E-value=0.1 Score=49.90 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+.|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999876
No 485
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.92 E-value=0.081 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 486
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.91 E-value=0.12 Score=51.83 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.2
Q ss_pred EEcCCCCcHHHHHHHHHhhc
Q 041248 184 LYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 184 I~G~gGiGKTtLa~~~~~~~ 203 (813)
|+|++|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987
No 487
>PRK13975 thymidylate kinase; Provisional
Probab=92.91 E-value=0.09 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999987
No 488
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.91 E-value=0.4 Score=52.20 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC--CCCC---------EEEEEEecCccCHHHHHHHHHHHcCCCCCc-----
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESP--TSFD---------CVIWAVVSKDLRLEKIQEDIGKKIGLVDDS----- 241 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----- 241 (813)
.-.-++|.|-.|+|||||+.++.+.. ... ...| .++++.+++.....+.+...+..-+.....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 44678999999999999999988775 200 0022 567777887766666666666665521110
Q ss_pred -cCCCCHHHH-----HHHHHHHh---cCCcEEEEEeccc
Q 041248 242 -WKSKSVEEK-----ALDIFRSL---REKRFVLLLDDIW 271 (813)
Q Consensus 242 -~~~~~~~~~-----~~~l~~~l---~~k~~LlVlDdv~ 271 (813)
.+....... .-.+.+++ +++.+|+++||+-
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 011111111 12244444 4699999999994
No 489
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.90 E-value=0.14 Score=54.16 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=39.3
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.+||-++.+..|.-.+.+....-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999988888888777777778899999999999999987655
No 490
>PRK14526 adenylate kinase; Provisional
Probab=92.89 E-value=0.12 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041248 182 IGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~~ 203 (813)
|.|+|++|+||||+|+.+....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998765
No 491
>PRK13946 shikimate kinase; Provisional
Probab=92.87 E-value=0.1 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+.|.++|++|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999986
No 492
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.86 E-value=0.1 Score=50.99 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+|+|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998875
No 493
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.82 E-value=0.1 Score=47.65 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|+|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998776653
No 494
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.81 E-value=0.08 Score=49.04 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 495
>PRK06851 hypothetical protein; Provisional
Probab=92.80 E-value=1.6 Score=46.68 Aligned_cols=56 Identities=21% Similarity=0.179 Sum_probs=39.4
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc
Q 041248 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL 222 (813)
Q Consensus 161 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 222 (813)
.|.-.-.+.+. ++-.+++.|.|.+|+|||||++.++.... ...++..++-|.+.+.
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dPd 255 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDPD 255 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCCC
Confidence 34444444444 34468899999999999999999999872 4567777766655543
No 496
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.75 E-value=0.32 Score=50.68 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=32.9
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.++=.......+..++.. .+.|.|.|.+|+||||+|+.++...
T Consensus 45 ~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH
Confidence 3444444455666666653 3569999999999999999999987
No 497
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.74 E-value=0.11 Score=50.17 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+..+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 498
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.72 E-value=0.13 Score=53.36 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFL 204 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~ 204 (813)
+.|+|+|-||+||||++..++...+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La 25 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALA 25 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHH
Confidence 4689999999999999999888773
No 499
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.72 E-value=4.4 Score=44.58 Aligned_cols=249 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred eeccChhhhhhhHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Q 041248 6 QITCDGAFFNRCLDCFLGKVANTSKLQDNLVALETELGKLIAAKNDVMMRVVNAERQQLRTLDQVQVWLSRVEAVETEAD 85 (813)
Q Consensus 6 ~~~~~~l~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~Wl~~v~~~~~~~e 85 (813)
|..++.+ ...+..+-.+...+..|-.++....+.|++. .+++.|.++=++++. ..
T Consensus 279 QDfln~v-CT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~-----------------------~q~K~~~kqqk~i~~-~K 333 (614)
T KOG0927|consen 279 QDFLNGV-CTNIIHLDNKKLIYYEGNYDQYVKTRSELEE-----------------------NQMKAYEKQQKQIAH-MK 333 (614)
T ss_pred hhhhhhH-hhhhheecccceeeecCCHHHHhhHHHHHhH-----------------------HHHHHHHHHHhHHHH-hh
Q ss_pred HHHHhccccccccccccccCccchhhhhHHHHHHHHHHHHHHHHHcC-CcccccccccccCCCCCCCccCCC---CCccc
Q 041248 86 ELKRHGSQEIDKLCVGGYCSKNCASSYKFGKQVAKKLRDVQTLIDEG-VFAAVATEVVPERAPEPVADERPT---EPTIV 161 (813)
Q Consensus 86 d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v 161 (813)
|++-.+-+... ..+++.......+.....++ .-+.....+..-.-+.....++|. ...-+
T Consensus 334 ~~ia~~g~g~a----------------~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F 397 (614)
T KOG0927|consen 334 DLIARFGHGSA----------------KLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSF 397 (614)
T ss_pred HHHHhhcccch----------------hhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEEecccc
Q ss_pred chhHHHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEec---------------------
Q 041248 162 GLQSQLEQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVS--------------------- 219 (813)
Q Consensus 162 Gr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--------------------- 219 (813)
|-+..-.-..++... +.-..|+++|+.|+|||||.+.++.+.....+.-....-....
T Consensus 398 ~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~ 477 (614)
T KOG0927|consen 398 GYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMM 477 (614)
T ss_pred CCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHH
Q ss_pred ---CccCHHHHHHHHHHHcCCCCCc-----cCCCCHHHHHHHHHHHhcCCcEEEEEecccCccccccc--ccCCCCCCCC
Q 041248 220 ---KDLRLEKIQEDIGKKIGLVDDS-----WKSKSVEEKALDIFRSLREKRFVLLLDDIWERVDLTKM--GIPLSGPKNT 289 (813)
Q Consensus 220 ---~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~~~l~~~~~~ 289 (813)
.+....+..+.|+..+++..+. ..-.+-+...-.+....-..+-++|||..-+..+.+.+ .... ...-.
T Consensus 478 ~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laea-iNe~~ 556 (614)
T KOG0927|consen 478 PKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA-INEFP 556 (614)
T ss_pred HhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHH-HhccC
Q ss_pred CcEEEEE
Q 041248 290 TSKVVFT 296 (813)
Q Consensus 290 ~s~ilvT 296 (813)
|+.|+|+
T Consensus 557 Ggvv~vS 563 (614)
T KOG0927|consen 557 GGVVLVS 563 (614)
T ss_pred Cceeeee
No 500
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.71 E-value=0.088 Score=49.70 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 041248 182 IGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 182 i~I~G~gGiGKTtLa~~~~~~ 202 (813)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999875
Done!