Query 041248
Match_columns 813
No_of_seqs 490 out of 3907
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2E-47 6.9E-52 435.4 21.6 313 158-493 128-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 1E-38 3.4E-43 365.6 17.6 286 158-486 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-36 7.1E-41 382.4 29.9 312 155-492 121-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.2E-34 7.7E-39 333.3 26.7 305 157-490 123-449 (591)
5 4fcg_A Uncharacterized protein 99.9 3.3E-21 1.1E-25 204.9 18.5 222 538-795 79-310 (328)
6 1ogq_A PGIP-2, polygalacturona 99.8 4.9E-20 1.7E-24 194.7 13.1 249 518-801 50-306 (313)
7 4fmz_A Internalin; leucine ric 99.8 1.1E-18 3.7E-23 187.7 22.5 272 501-802 49-326 (347)
8 1xku_A Decorin; proteoglycan, 99.8 3.9E-19 1.3E-23 189.7 18.5 193 519-738 32-225 (330)
9 4fmz_A Internalin; leucine ric 99.8 4.3E-19 1.5E-23 190.8 18.9 263 507-797 77-344 (347)
10 3o6n_A APL1; leucine-rich repe 99.8 3.9E-19 1.3E-23 194.4 18.3 134 516-654 43-180 (390)
11 2id5_A Lingo-1, leucine rich r 99.8 7.5E-19 2.6E-23 197.7 19.5 150 500-655 15-168 (477)
12 2z80_A TOLL-like receptor 2, v 99.8 2.6E-19 8.8E-24 192.9 14.6 268 501-798 36-313 (353)
13 3v47_A TOLL-like receptor 5B a 99.8 9.1E-19 3.1E-23 195.8 19.6 151 500-656 14-171 (455)
14 1o6v_A Internalin A; bacterial 99.8 2.1E-18 7.2E-23 193.1 22.3 140 504-653 54-213 (466)
15 2z7x_B TOLL-like receptor 1, v 99.8 1.8E-18 6.2E-23 196.8 21.5 119 500-625 4-126 (520)
16 2ft3_A Biglycan; proteoglycan, 99.8 4.1E-19 1.4E-23 189.6 14.8 243 520-798 35-306 (332)
17 4fcg_A Uncharacterized protein 99.8 1.1E-18 3.8E-23 185.4 17.3 217 563-805 79-296 (328)
18 3zyj_A Leucine-rich repeat-con 99.8 2.5E-18 8.6E-23 191.0 20.8 239 501-774 48-290 (440)
19 3oja_B Anopheles plasmodium-re 99.8 8.5E-19 2.9E-23 202.5 17.4 133 517-654 50-186 (597)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.7E-18 1.3E-22 196.1 22.6 120 499-625 34-157 (562)
21 3zyi_A Leucine-rich repeat-con 99.8 2.5E-18 8.5E-23 191.7 20.3 239 501-774 59-301 (452)
22 2z66_A Variable lymphocyte rec 99.8 5.3E-19 1.8E-23 186.4 13.9 215 502-739 13-233 (306)
23 3vq2_A TLR4, TOLL-like recepto 99.8 2.1E-18 7.3E-23 200.3 18.7 149 500-655 15-169 (606)
24 2id5_A Lingo-1, leucine rich r 99.8 3.6E-18 1.2E-22 192.1 18.6 265 514-797 52-331 (477)
25 4ecn_A Leucine-rich repeat pro 99.8 1E-18 3.4E-23 206.6 14.5 133 515-654 445-610 (876)
26 1o6v_A Internalin A; bacterial 99.8 4.6E-18 1.6E-22 190.4 18.9 261 516-797 44-320 (466)
27 3bz5_A Internalin-J, INLJ; leu 99.8 5.8E-18 2E-22 188.1 18.7 271 503-802 49-323 (457)
28 3j0a_A TOLL-like receptor 5; m 99.8 1.9E-17 6.5E-22 199.1 22.7 152 498-655 6-164 (844)
29 3vq2_A TLR4, TOLL-like recepto 99.8 7.3E-18 2.5E-22 195.8 17.7 258 504-797 293-556 (606)
30 2ft3_A Biglycan; proteoglycan, 99.8 2.4E-17 8E-22 175.9 19.7 280 501-797 38-331 (332)
31 3v47_A TOLL-like receptor 5B a 99.7 9.2E-18 3.1E-22 187.6 16.5 265 514-797 50-406 (455)
32 3o6n_A APL1; leucine-rich repe 99.7 1.7E-17 5.8E-22 181.3 18.2 114 537-655 42-157 (390)
33 1ziw_A TOLL-like receptor 3; i 99.7 2.2E-17 7.7E-22 194.4 19.5 151 499-655 7-161 (680)
34 3t6q_A CD180 antigen; protein- 99.7 2.1E-17 7.1E-22 191.9 18.8 149 500-654 16-168 (606)
35 2z81_A CD282 antigen, TOLL-lik 99.7 1.9E-17 6.4E-22 189.9 18.1 147 503-654 12-163 (549)
36 1xku_A Decorin; proteoglycan, 99.7 7.8E-17 2.7E-21 171.7 21.4 279 501-796 36-329 (330)
37 4eco_A Uncharacterized protein 99.7 4.6E-18 1.6E-22 197.6 12.3 271 517-798 248-578 (636)
38 4ecn_A Leucine-rich repeat pro 99.7 2.4E-17 8.3E-22 194.9 18.4 274 501-798 553-839 (876)
39 4eco_A Uncharacterized protein 99.7 1.2E-17 4.1E-22 194.1 15.3 258 517-798 329-599 (636)
40 1ogq_A PGIP-2, polygalacturona 99.7 1.7E-17 5.6E-22 175.2 14.9 226 540-802 50-284 (313)
41 2z66_A Variable lymphocyte rec 99.7 1.5E-17 5.3E-22 175.2 14.5 245 521-798 10-260 (306)
42 3t6q_A CD180 antigen; protein- 99.7 4E-17 1.4E-21 189.5 19.3 267 514-798 274-559 (606)
43 1ozn_A Reticulon 4 receptor; N 99.7 6.7E-17 2.3E-21 168.3 19.0 221 521-775 14-237 (285)
44 3rgz_A Protein brassinosteroid 99.7 3.1E-17 1.1E-21 195.1 18.3 254 518-802 394-720 (768)
45 2z63_A TOLL-like receptor 4, v 99.7 4.1E-17 1.4E-21 188.0 18.6 149 500-655 11-165 (570)
46 3oja_B Anopheles plasmodium-re 99.7 3.3E-17 1.1E-21 189.2 17.2 115 537-656 48-164 (597)
47 3bz5_A Internalin-J, INLJ; leu 99.7 4E-17 1.4E-21 181.3 17.0 262 505-796 73-349 (457)
48 2z7x_B TOLL-like receptor 1, v 99.7 7.4E-17 2.5E-21 183.5 19.1 124 521-653 3-129 (520)
49 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-16 5.8E-21 181.6 21.9 250 499-799 43-297 (622)
50 1ozn_A Reticulon 4 receptor; N 99.7 1.9E-17 6.4E-22 172.5 11.6 216 501-740 16-236 (285)
51 1ziw_A TOLL-like receptor 3; i 99.7 1.1E-16 3.7E-21 188.5 18.2 173 521-714 7-181 (680)
52 2z63_A TOLL-like receptor 4, v 99.7 4.5E-17 1.6E-21 187.6 14.5 137 513-654 47-192 (570)
53 3j0a_A TOLL-like receptor 5; m 99.7 1.9E-16 6.5E-21 190.4 20.2 151 521-690 7-160 (844)
54 3rgz_A Protein brassinosteroid 99.7 6.4E-17 2.2E-21 192.4 15.8 40 760-799 511-551 (768)
55 2z81_A CD282 antigen, TOLL-lik 99.7 2.9E-16 1E-20 179.9 20.0 135 514-653 46-210 (549)
56 3o53_A Protein LRIM1, AGAP0063 99.7 1E-17 3.5E-22 177.3 6.3 241 518-803 34-279 (317)
57 2z80_A TOLL-like receptor 2, v 99.7 1.2E-16 4E-21 172.1 14.2 250 522-803 35-293 (353)
58 2xwt_C Thyrotropin receptor; s 99.7 3.4E-16 1.2E-20 158.4 16.1 102 541-649 32-140 (239)
59 1wwl_A Monocyte differentiatio 99.7 1.1E-17 3.7E-22 176.7 5.1 243 519-797 44-307 (312)
60 2qen_A Walker-type ATPase; unk 99.7 1.6E-15 5.4E-20 163.1 21.6 293 158-487 12-349 (350)
61 3o53_A Protein LRIM1, AGAP0063 99.7 6.9E-17 2.4E-21 170.9 10.5 236 520-799 12-250 (317)
62 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 9.8E-16 3.4E-20 175.8 19.7 125 520-653 33-160 (562)
63 4g8a_A TOLL-like receptor 4; l 99.7 8.4E-16 2.9E-20 179.4 19.5 146 502-654 37-188 (635)
64 3zyi_A Leucine-rich repeat-con 99.7 4.4E-16 1.5E-20 173.5 15.9 241 520-797 56-301 (452)
65 3oja_A Leucine-rich immune mol 99.7 1.6E-16 5.3E-21 178.2 11.9 232 518-794 34-270 (487)
66 3oja_A Leucine-rich immune mol 99.7 3.9E-17 1.3E-21 183.1 7.0 219 537-799 31-250 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.7 1.4E-15 4.9E-20 173.9 20.0 234 519-803 41-277 (622)
68 1h6u_A Internalin H; cell adhe 99.7 5E-16 1.7E-20 163.3 14.7 205 528-780 29-233 (308)
69 3zyj_A Leucine-rich repeat-con 99.7 5.8E-16 2E-20 171.9 15.6 242 520-797 45-290 (440)
70 1h6u_A Internalin H; cell adhe 99.7 5.1E-16 1.7E-20 163.3 14.3 192 514-740 37-228 (308)
71 2z62_A TOLL-like receptor 4, v 99.7 1.1E-15 3.8E-20 158.3 16.3 143 504-653 15-163 (276)
72 3rfs_A Internalin B, repeat mo 99.6 6E-16 2E-20 159.8 13.3 133 515-654 38-172 (272)
73 2o6q_A Variable lymphocyte rec 99.6 1.9E-15 6.6E-20 155.8 16.8 198 519-774 17-216 (270)
74 2o6q_A Variable lymphocyte rec 99.6 1.4E-15 4.8E-20 156.9 15.7 171 500-691 20-194 (270)
75 4ay9_X Follicle-stimulating ho 99.6 2.3E-15 7.8E-20 161.5 17.6 236 523-795 14-255 (350)
76 2fna_A Conserved hypothetical 99.6 6.8E-15 2.3E-19 158.6 21.4 290 158-486 13-356 (357)
77 1jl5_A Outer protein YOPM; leu 99.6 5.9E-15 2E-19 163.7 20.9 123 518-655 131-253 (454)
78 1p9a_G Platelet glycoprotein I 99.6 1.2E-15 4.2E-20 158.7 14.5 196 517-738 9-204 (290)
79 2z62_A TOLL-like receptor 4, v 99.6 3.4E-15 1.2E-19 154.6 16.0 218 523-774 12-235 (276)
80 2ast_B S-phase kinase-associat 99.6 4E-16 1.4E-20 166.7 8.1 251 520-803 49-309 (336)
81 1jl5_A Outer protein YOPM; leu 99.6 1.3E-14 4.5E-19 160.9 19.9 266 500-797 75-368 (454)
82 1w5s_A Origin recognition comp 99.6 6.9E-15 2.4E-19 161.9 15.6 291 158-471 22-371 (412)
83 2xwt_C Thyrotropin receptor; s 99.6 5.3E-15 1.8E-19 149.5 12.7 211 550-799 20-239 (239)
84 1p9a_G Platelet glycoprotein I 99.6 8E-15 2.7E-19 152.6 14.2 189 501-715 15-206 (290)
85 2ast_B S-phase kinase-associat 99.6 2.2E-15 7.6E-20 160.9 9.9 223 541-796 48-282 (336)
86 1wwl_A Monocyte differentiatio 99.6 1.3E-15 4.6E-20 160.6 8.0 221 520-774 65-307 (312)
87 3rfs_A Internalin B, repeat mo 99.6 1.7E-14 5.7E-19 148.9 14.9 170 501-690 46-217 (272)
88 3qfl_A MLA10; coiled-coil, (CC 99.6 4E-15 1.4E-19 129.1 7.5 82 7-96 1-83 (115)
89 3m19_A Variable lymphocyte rec 99.5 4.8E-14 1.6E-18 143.6 15.1 169 501-690 19-191 (251)
90 4ezg_A Putative uncharacterize 99.5 4E-14 1.4E-18 138.3 13.5 152 515-691 41-194 (197)
91 1h6t_A Internalin B; cell adhe 99.5 1.6E-14 5.5E-19 150.4 11.3 169 514-714 42-210 (291)
92 3m19_A Variable lymphocyte rec 99.5 4.3E-14 1.5E-18 143.9 13.6 172 519-713 15-188 (251)
93 1h6t_A Internalin B; cell adhe 99.5 2.6E-14 8.9E-19 148.8 11.8 103 538-651 44-146 (291)
94 2ca6_A RAN GTPase-activating p 99.5 4.1E-15 1.4E-19 162.1 5.7 207 518-739 32-284 (386)
95 4ay9_X Follicle-stimulating ho 99.5 6.5E-14 2.2E-18 150.1 15.0 226 543-804 12-241 (350)
96 1m9s_A Internalin B; cell inva 99.5 5.2E-14 1.8E-18 160.8 11.7 169 514-714 39-207 (605)
97 1m9s_A Internalin B; cell inva 99.5 2E-14 6.8E-19 164.3 8.2 186 520-740 23-208 (605)
98 2v9t_B SLIT homolog 2 protein 99.5 1.7E-13 5.9E-18 136.2 12.5 149 521-690 14-164 (220)
99 3e6j_A Variable lymphocyte rec 99.5 2.9E-13 9.8E-18 135.5 14.1 148 521-690 22-171 (229)
100 4glp_A Monocyte differentiatio 99.5 8.9E-14 3E-18 146.5 9.5 204 564-797 90-305 (310)
101 2ca6_A RAN GTPase-activating p 99.5 1.6E-14 5.6E-19 157.3 3.6 238 536-798 28-315 (386)
102 1xeu_A Internalin C; cellular 99.4 3.4E-13 1.2E-17 138.0 12.6 153 511-692 34-186 (263)
103 2v70_A SLIT-2, SLIT homolog 2 99.4 4.7E-13 1.6E-17 133.0 12.3 150 521-691 14-166 (220)
104 2v9t_B SLIT homolog 2 protein 99.4 7.4E-13 2.5E-17 131.6 13.7 148 500-653 15-166 (220)
105 3e6j_A Variable lymphocyte rec 99.4 6.2E-13 2.1E-17 133.1 12.8 146 502-653 25-173 (229)
106 2o6s_A Variable lymphocyte rec 99.4 5E-13 1.7E-17 131.8 11.9 147 522-689 11-159 (208)
107 3goz_A Leucine-rich repeat-con 99.4 8.7E-14 3E-18 150.0 6.7 235 519-774 23-295 (362)
108 1xeu_A Internalin C; cellular 99.4 8.2E-14 2.8E-18 142.6 5.8 166 516-714 17-182 (263)
109 1z7x_W Ribonuclease inhibitor; 99.4 5.4E-14 1.8E-18 157.2 4.8 155 519-690 4-182 (461)
110 2qby_B CDC6 homolog 3, cell di 99.4 1.7E-11 5.9E-16 133.2 24.1 289 158-471 20-339 (384)
111 4glp_A Monocyte differentiatio 99.4 2.2E-13 7.6E-18 143.4 8.6 223 519-774 65-305 (310)
112 4ezg_A Putative uncharacterize 99.4 1.3E-12 4.4E-17 127.5 12.8 146 500-653 48-195 (197)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 1.4E-12 4.9E-17 129.5 12.9 147 501-653 16-167 (220)
114 2o6s_A Variable lymphocyte rec 99.4 2.4E-12 8.1E-17 126.9 14.2 146 502-653 13-162 (208)
115 1z7x_W Ribonuclease inhibitor; 99.4 9.8E-14 3.4E-18 155.1 4.8 205 518-739 56-294 (461)
116 2xot_A Amphoterin-induced prot 99.4 1.2E-12 4E-17 141.0 12.0 170 500-690 22-201 (361)
117 3cvr_A Invasion plasmid antige 99.4 2E-12 6.7E-17 146.1 14.1 180 519-739 60-240 (571)
118 2xot_A Amphoterin-induced prot 99.4 1.2E-12 4E-17 141.0 11.2 175 520-714 20-199 (361)
119 2v1u_A Cell division control p 99.4 1.5E-11 5.1E-16 133.9 20.0 290 158-471 19-351 (387)
120 3cvr_A Invasion plasmid antige 99.4 1.6E-12 5.6E-17 146.7 12.2 182 540-780 59-247 (571)
121 2ell_A Acidic leucine-rich nuc 99.4 1.6E-12 5.4E-17 123.3 9.8 130 518-654 24-162 (168)
122 4g8a_A TOLL-like receptor 4; l 99.4 5.4E-12 1.8E-16 147.1 16.4 245 519-795 329-576 (635)
123 2qby_A CDC6 homolog 1, cell di 99.4 3.7E-11 1.3E-15 130.7 21.6 293 158-471 20-348 (386)
124 3ogk_B Coronatine-insensitive 99.3 1.8E-12 6.1E-17 149.8 10.4 37 761-797 434-474 (592)
125 3ogk_B Coronatine-insensitive 99.3 2.3E-12 8E-17 148.8 11.1 278 518-802 192-528 (592)
126 2ell_A Acidic leucine-rich nuc 99.3 3.3E-12 1.1E-16 121.1 9.6 136 537-691 21-160 (168)
127 1fnn_A CDC6P, cell division co 99.3 9.8E-11 3.4E-15 127.5 22.2 291 158-471 17-351 (389)
128 1a9n_A U2A', U2A'; complex (nu 99.3 2.4E-12 8.1E-17 123.1 8.2 141 533-692 12-154 (176)
129 3goz_A Leucine-rich repeat-con 99.3 1.7E-12 5.9E-17 139.8 7.7 252 523-797 3-295 (362)
130 4b8c_D Glucose-repressible alc 99.3 2.1E-12 7.2E-17 151.4 8.3 153 518-692 173-330 (727)
131 1a9n_A U2A', U2A'; complex (nu 99.3 3.6E-12 1.2E-16 121.8 8.5 130 515-651 16-152 (176)
132 2p1m_B Transport inhibitor res 99.3 8.2E-13 2.8E-17 152.8 3.9 126 518-647 105-243 (594)
133 2je0_A Acidic leucine-rich nuc 99.3 4.4E-12 1.5E-16 117.5 8.0 121 519-646 18-147 (149)
134 2p1m_B Transport inhibitor res 99.3 2.8E-12 9.5E-17 148.3 6.2 35 761-797 430-467 (594)
135 2o6r_A Variable lymphocyte rec 99.3 3.2E-11 1.1E-15 115.4 12.4 128 520-653 9-138 (177)
136 2je0_A Acidic leucine-rich nuc 99.2 7.2E-12 2.5E-16 116.1 7.4 128 538-685 15-147 (149)
137 1w8a_A SLIT protein; signaling 99.2 2.3E-11 7.7E-16 118.0 11.2 127 521-653 11-140 (192)
138 2wfh_A SLIT homolog 2 protein 99.2 3.9E-11 1.3E-15 116.3 12.3 125 521-652 13-139 (193)
139 2wfh_A SLIT homolog 2 protein 99.2 2.5E-11 8.5E-16 117.7 9.9 125 543-690 13-138 (193)
140 1dce_A Protein (RAB geranylger 99.2 1E-11 3.4E-16 141.1 7.2 120 523-655 428-549 (567)
141 1njg_A DNA polymerase III subu 99.2 1.9E-10 6.4E-15 116.3 14.7 196 158-365 23-230 (250)
142 4b8c_D Glucose-repressible alc 99.2 2.8E-11 9.6E-16 141.9 8.6 109 537-652 221-329 (727)
143 1w8a_A SLIT protein; signaling 99.2 3.2E-11 1.1E-15 116.9 7.6 126 543-691 11-139 (192)
144 1dce_A Protein (RAB geranylger 99.1 9.2E-11 3.2E-15 133.1 10.3 121 519-646 442-567 (567)
145 2chg_A Replication factor C sm 99.1 4.1E-10 1.4E-14 112.0 13.1 183 158-362 17-203 (226)
146 2o6r_A Variable lymphocyte rec 99.1 4.2E-10 1.5E-14 107.4 10.7 127 542-691 9-137 (177)
147 1ds9_A Outer arm dynein; leuci 99.1 1.4E-11 4.9E-16 120.2 -0.7 117 553-691 37-153 (198)
148 2r9u_A Variable lymphocyte rec 99.0 5.4E-10 1.9E-14 106.1 9.8 103 543-653 15-119 (174)
149 1ds9_A Outer arm dynein; leuci 99.0 1.1E-11 3.6E-16 121.1 -2.7 143 529-684 36-180 (198)
150 3g39_A Variable lymphocyte rec 99.0 7.7E-10 2.6E-14 104.7 9.4 103 543-653 12-116 (170)
151 2r9u_A Variable lymphocyte rec 99.0 1.4E-09 4.8E-14 103.3 9.4 107 520-632 14-122 (174)
152 3sb4_A Hypothetical leucine ri 99.0 1.8E-09 6.2E-14 114.4 11.1 56 539-599 100-156 (329)
153 1hqc_A RUVB; extended AAA-ATPa 99.0 3.4E-08 1.2E-12 104.3 20.8 272 158-470 12-324 (324)
154 3sb4_A Hypothetical leucine ri 98.9 2E-09 6.7E-14 114.1 9.5 250 517-794 24-305 (329)
155 3g39_A Variable lymphocyte rec 98.9 3.4E-09 1.2E-13 100.2 9.8 101 520-625 11-113 (170)
156 1sxj_B Activator 1 37 kDa subu 98.9 5.1E-09 1.7E-13 110.6 10.9 184 158-364 21-211 (323)
157 4fdw_A Leucine rich hypothetic 98.9 3.8E-08 1.3E-12 106.6 17.2 228 541-795 136-379 (401)
158 1iqp_A RFCS; clamp loader, ext 98.7 1.9E-08 6.6E-13 106.3 9.7 180 158-363 25-212 (327)
159 4fdw_A Leucine rich hypothetic 98.7 2E-07 6.8E-12 100.9 16.9 100 538-648 111-212 (401)
160 3te6_A Regulatory protein SIR3 98.7 1.9E-07 6.4E-12 96.3 15.5 170 159-331 21-212 (318)
161 2ifg_A High affinity nerve gro 98.7 3E-08 1E-12 105.8 9.5 101 522-625 12-114 (347)
162 2ifg_A High affinity nerve gro 98.6 5.3E-08 1.8E-12 103.9 9.2 103 544-653 12-117 (347)
163 2chq_A Replication factor C sm 98.6 2.7E-07 9.2E-12 97.0 11.9 179 158-362 17-203 (319)
164 1jr3_A DNA polymerase III subu 98.5 5.1E-07 1.7E-11 97.3 14.2 194 158-363 16-221 (373)
165 1jbk_A CLPB protein; beta barr 98.4 3.4E-07 1.2E-11 88.2 7.3 46 158-203 22-67 (195)
166 3un9_A NLR family member X1; l 98.4 4.9E-08 1.7E-12 104.6 1.0 156 519-691 73-252 (372)
167 3un9_A NLR family member X1; l 98.4 5.6E-08 1.9E-12 104.2 1.2 160 539-715 71-250 (372)
168 3e4g_A ATP synthase subunit S, 98.3 2.1E-07 7.1E-12 86.6 3.8 91 705-802 62-155 (176)
169 3h4m_A Proteasome-activating n 98.3 1.4E-06 4.9E-11 89.8 9.8 177 158-361 17-229 (285)
170 3bos_A Putative DNA replicatio 98.3 3.8E-07 1.3E-11 91.5 5.2 172 158-362 28-216 (242)
171 1sxj_A Activator 1 95 kDa subu 98.3 5.9E-06 2E-10 92.6 14.3 189 158-363 39-253 (516)
172 1d2n_A N-ethylmaleimide-sensit 98.3 1.3E-05 4.5E-10 81.8 15.8 168 158-355 33-229 (272)
173 3pvs_A Replication-associated 98.3 1.1E-05 3.8E-10 88.0 15.8 173 158-361 26-213 (447)
174 1sxj_D Activator 1 41 kDa subu 98.2 2.3E-06 7.9E-11 91.3 9.7 191 158-361 37-233 (353)
175 2z4s_A Chromosomal replication 98.2 3.4E-06 1.2E-10 92.3 11.0 181 159-360 106-303 (440)
176 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.7E-05 5.9E-10 80.4 13.7 180 158-362 6-221 (262)
177 1sxj_E Activator 1 40 kDa subu 98.1 7.7E-06 2.6E-10 87.2 10.9 194 158-362 14-236 (354)
178 3pfi_A Holliday junction ATP-d 98.1 3.4E-05 1.2E-09 81.6 15.5 171 158-362 29-226 (338)
179 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00016 5.4E-09 75.6 20.1 181 158-363 12-223 (322)
180 3syl_A Protein CBBX; photosynt 98.1 8.4E-06 2.9E-10 85.1 10.4 151 159-331 32-218 (309)
181 3uk6_A RUVB-like 2; hexameric 98.1 1.7E-05 5.8E-10 85.0 12.6 46 158-203 44-94 (368)
182 3d8b_A Fidgetin-like protein 1 98.0 3.4E-05 1.2E-09 82.0 13.9 179 158-363 84-295 (357)
183 3eie_A Vacuolar protein sortin 98.0 3.6E-05 1.2E-09 80.6 13.7 179 158-363 18-228 (322)
184 2ra8_A Uncharacterized protein 98.0 7.2E-06 2.5E-10 87.0 8.3 57 561-622 168-227 (362)
185 1a5t_A Delta prime, HOLB; zinc 98.0 6.1E-05 2.1E-09 79.2 15.1 168 164-362 8-204 (334)
186 3b9p_A CG5977-PA, isoform A; A 98.0 0.00014 4.8E-09 75.2 17.2 179 158-363 21-233 (297)
187 3vfd_A Spastin; ATPase, microt 98.0 0.00017 5.8E-09 77.7 17.7 180 158-363 115-326 (389)
188 2qp9_X Vacuolar protein sortin 98.0 5.6E-05 1.9E-09 80.2 13.6 180 158-363 51-261 (355)
189 3u61_B DNA polymerase accessor 98.0 4.3E-05 1.5E-09 80.3 12.5 172 158-359 26-212 (324)
190 3cf0_A Transitional endoplasmi 97.9 0.00014 4.8E-09 75.2 15.9 174 158-358 15-223 (301)
191 1sxj_C Activator 1 40 kDa subu 97.9 4.1E-05 1.4E-09 81.0 11.8 176 158-359 25-208 (340)
192 1l8q_A Chromosomal replication 97.9 2.7E-05 9.4E-10 81.7 9.8 166 167-358 23-203 (324)
193 2zan_A Vacuolar protein sortin 97.9 0.00023 8E-09 77.8 17.0 181 158-363 134-345 (444)
194 2p65_A Hypothetical protein PF 97.9 1.4E-05 4.9E-10 76.2 6.5 46 158-203 22-67 (187)
195 3pxg_A Negative regulator of g 97.7 0.00019 6.4E-09 79.2 13.3 150 158-332 180-340 (468)
196 2ra8_A Uncharacterized protein 97.7 4.2E-05 1.4E-09 81.1 7.7 137 537-691 169-320 (362)
197 1in4_A RUVB, holliday junction 97.7 0.00086 2.9E-08 70.4 17.5 171 158-362 25-222 (334)
198 4b4t_J 26S protease regulatory 97.7 0.00029 9.9E-09 74.4 13.1 171 158-356 148-354 (405)
199 2gno_A DNA polymerase III, gam 97.7 0.00015 5.1E-09 74.7 10.6 147 162-330 1-152 (305)
200 3rw6_A Nuclear RNA export fact 97.7 3.8E-05 1.3E-09 77.1 5.8 82 562-647 167-259 (267)
201 3hu3_A Transitional endoplasmi 97.7 0.00048 1.7E-08 75.8 15.0 176 159-361 205-413 (489)
202 1qvr_A CLPB protein; coiled co 97.6 0.00014 4.8E-09 86.7 11.2 155 158-330 170-345 (854)
203 3e4g_A ATP synthase subunit S, 97.6 4E-05 1.4E-09 71.2 4.9 18 761-778 137-154 (176)
204 4fs7_A Uncharacterized protein 97.6 0.00044 1.5E-08 74.7 13.7 214 536-794 158-374 (394)
205 3rw6_A Nuclear RNA export fact 97.6 1.3E-05 4.3E-10 80.6 1.2 86 562-653 138-234 (267)
206 1io0_A Tropomodulin; LRR prote 97.6 2.1E-05 7.1E-10 75.0 2.7 118 561-691 32-164 (185)
207 3n70_A Transport activator; si 97.6 8.1E-05 2.8E-09 67.7 6.4 45 159-203 2-48 (145)
208 4b4t_L 26S protease subunit RP 97.6 0.00035 1.2E-08 75.1 12.2 172 158-356 181-387 (437)
209 4b4t_I 26S protease regulatory 97.6 0.00067 2.3E-08 71.9 13.9 170 159-356 183-388 (437)
210 4b4t_H 26S protease regulatory 97.5 0.00053 1.8E-08 73.4 12.8 171 159-356 210-415 (467)
211 2r62_A Cell division protease 97.5 9.8E-05 3.4E-09 75.1 7.0 46 158-203 11-68 (268)
212 4b4t_M 26S protease regulatory 97.5 0.00028 9.6E-09 75.7 10.3 171 158-356 181-387 (434)
213 1lv7_A FTSH; alpha/beta domain 97.5 0.0021 7.1E-08 64.7 16.2 176 158-360 12-222 (257)
214 4b4t_K 26S protease regulatory 97.4 0.00081 2.8E-08 72.1 12.6 172 158-356 172-379 (428)
215 3pxi_A Negative regulator of g 97.4 0.00071 2.4E-08 79.6 13.3 150 158-332 180-340 (758)
216 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00094 3.2E-08 78.7 14.2 155 158-330 186-362 (758)
217 1io0_A Tropomodulin; LRR prote 97.4 8.9E-05 3.1E-09 70.6 4.4 111 536-651 32-163 (185)
218 1ofh_A ATP-dependent HSL prote 97.4 0.00079 2.7E-08 69.9 12.0 46 158-203 15-74 (310)
219 3ec2_A DNA replication protein 97.4 7.4E-05 2.5E-09 70.8 3.6 41 163-203 19-62 (180)
220 2ce7_A Cell division protein F 97.4 0.0008 2.7E-08 73.4 11.9 172 158-356 16-221 (476)
221 4gt6_A Cell surface protein; l 97.4 0.0029 9.8E-08 68.2 16.1 250 520-796 66-367 (394)
222 4fs7_A Uncharacterized protein 97.4 0.0011 3.9E-08 71.4 12.8 213 516-772 160-375 (394)
223 2w58_A DNAI, primosome compone 97.3 0.00063 2.2E-08 65.6 8.8 113 166-299 37-158 (202)
224 3co5_A Putative two-component 97.3 0.00011 3.8E-09 66.5 2.8 45 159-203 5-51 (143)
225 4gt6_A Cell surface protein; l 97.1 0.0024 8.3E-08 68.8 12.2 108 536-648 59-169 (394)
226 4fcw_A Chaperone protein CLPB; 97.0 0.0013 4.6E-08 68.2 9.1 45 159-203 18-71 (311)
227 2kjq_A DNAA-related protein; s 97.0 8.5E-05 2.9E-09 67.7 -0.3 26 178-203 35-60 (149)
228 2c9o_A RUVB-like 1; hexameric 97.0 0.0036 1.2E-07 68.7 11.9 46 158-203 37-87 (456)
229 3cf2_A TER ATPase, transitiona 97.0 0.0018 6.3E-08 74.9 9.8 172 159-357 205-408 (806)
230 1ypw_A Transitional endoplasmi 96.7 0.0059 2E-07 71.8 11.6 172 158-356 204-407 (806)
231 3m6a_A ATP-dependent protease 96.7 0.0091 3.1E-07 66.8 12.4 45 159-203 82-132 (543)
232 2x8a_A Nuclear valosin-contain 96.7 0.026 8.8E-07 57.0 14.6 150 158-331 10-192 (274)
233 2dhr_A FTSH; AAA+ protein, hex 96.6 0.021 7E-07 62.7 14.5 168 158-356 31-236 (499)
234 3pxi_A Negative regulator of g 96.6 0.001 3.4E-08 78.4 4.4 46 158-203 491-545 (758)
235 1ixz_A ATP-dependent metallopr 96.5 0.013 4.5E-07 58.5 11.5 171 158-356 16-221 (254)
236 1iy2_A ATP-dependent metallopr 96.5 0.013 4.4E-07 59.6 11.2 170 158-356 40-245 (278)
237 2cvh_A DNA repair and recombin 96.4 0.0082 2.8E-07 58.5 9.0 87 178-271 19-115 (220)
238 4h09_A Hypothetical leucine ri 96.4 0.02 7E-07 61.0 12.6 84 558-648 210-295 (379)
239 3hr8_A Protein RECA; alpha and 96.4 0.0075 2.6E-07 63.0 8.5 86 178-271 60-149 (356)
240 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0032 1.1E-07 64.1 5.5 68 179-271 123-192 (331)
241 1n0w_A DNA repair protein RAD5 96.3 0.012 4.2E-07 58.2 9.3 92 178-271 23-129 (243)
242 3io5_A Recombination and repai 96.2 0.015 5.1E-07 58.9 9.4 87 180-272 29-122 (333)
243 1v5w_A DMC1, meiotic recombina 96.0 0.029 9.8E-07 58.8 11.1 58 178-237 121-182 (343)
244 2z43_A DNA repair and recombin 96.0 0.02 6.8E-07 59.5 9.8 93 178-271 106-213 (324)
245 2zr9_A Protein RECA, recombina 95.9 0.018 6.3E-07 60.2 8.6 86 178-271 60-149 (349)
246 2qgz_A Helicase loader, putati 95.8 0.0078 2.7E-07 62.1 5.5 41 163-203 133-176 (308)
247 4h09_A Hypothetical leucine ri 95.7 0.026 8.9E-07 60.2 9.4 104 536-647 236-341 (379)
248 3t15_A Ribulose bisphosphate c 95.7 0.0072 2.5E-07 61.9 4.7 26 178-203 35-60 (293)
249 2b8t_A Thymidine kinase; deoxy 95.7 0.0041 1.4E-07 60.4 2.5 114 178-301 11-127 (223)
250 1g5t_A COB(I)alamin adenosyltr 95.7 0.0061 2.1E-07 57.4 3.5 114 179-300 28-163 (196)
251 1rz3_A Hypothetical protein rb 95.7 0.013 4.3E-07 56.3 5.9 42 162-203 2-46 (201)
252 1r6b_X CLPA protein; AAA+, N-t 95.7 0.017 5.8E-07 67.9 8.2 46 158-203 458-512 (758)
253 1xp8_A RECA protein, recombina 95.6 0.027 9.2E-07 59.2 8.6 86 178-271 73-162 (366)
254 1u94_A RECA protein, recombina 95.6 0.025 8.7E-07 59.2 8.3 86 178-271 62-151 (356)
255 2bjv_A PSP operon transcriptio 95.5 0.014 4.9E-07 58.7 5.9 46 158-203 6-53 (265)
256 3rfe_A Platelet glycoprotein I 95.4 0.02 7E-07 50.3 5.9 33 592-624 32-65 (130)
257 2i1q_A DNA repair and recombin 95.4 0.036 1.2E-06 57.6 8.8 92 178-270 97-213 (322)
258 3rfe_A Platelet glycoprotein I 95.4 0.017 5.9E-07 50.8 5.4 56 594-652 11-68 (130)
259 1qvr_A CLPB protein; coiled co 95.4 0.02 6.7E-07 68.2 7.6 45 159-203 559-612 (854)
260 3ice_A Transcription terminati 95.3 0.011 3.7E-07 61.5 4.4 53 169-222 163-216 (422)
261 1ojl_A Transcriptional regulat 95.3 0.019 6.6E-07 59.0 6.1 46 158-203 2-49 (304)
262 1jr3_D DNA polymerase III, del 95.3 0.073 2.5E-06 55.8 10.7 162 171-361 10-183 (343)
263 2px0_A Flagellar biosynthesis 95.2 0.056 1.9E-06 55.1 9.2 87 178-270 104-191 (296)
264 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.043 1.5E-06 53.7 7.9 48 178-230 22-69 (235)
265 3c8u_A Fructokinase; YP_612366 95.0 0.018 6.3E-07 55.5 4.8 38 166-203 7-46 (208)
266 4a74_A DNA repair and recombin 95.0 0.093 3.2E-06 51.2 9.9 58 178-236 24-84 (231)
267 3lda_A DNA repair protein RAD5 95.0 0.092 3.2E-06 55.8 10.3 60 178-238 177-239 (400)
268 2hf9_A Probable hydrogenase ni 94.9 0.027 9.2E-07 55.0 5.8 40 164-203 23-62 (226)
269 1pzn_A RAD51, DNA repair and r 94.9 0.075 2.6E-06 55.7 9.4 93 178-272 130-242 (349)
270 1qhx_A CPT, protein (chloramph 94.8 0.017 5.8E-07 54.0 3.8 24 180-203 4-27 (178)
271 2r44_A Uncharacterized protein 94.8 0.019 6.4E-07 60.0 4.4 44 158-203 27-70 (331)
272 3kb2_A SPBC2 prophage-derived 94.7 0.018 6E-07 53.5 3.5 24 180-203 2-25 (173)
273 3lw7_A Adenylate kinase relate 94.6 0.018 6.1E-07 53.6 3.4 23 180-203 2-24 (179)
274 3nbx_X ATPase RAVA; AAA+ ATPas 94.5 0.029 1E-06 61.6 5.3 44 158-203 22-65 (500)
275 1vma_A Cell division protein F 94.5 0.078 2.7E-06 54.2 8.1 90 178-271 103-196 (306)
276 2wsm_A Hydrogenase expression/ 94.5 0.031 1.1E-06 54.4 4.9 43 161-203 12-54 (221)
277 1zp6_A Hypothetical protein AT 94.4 0.023 8E-07 53.8 3.8 26 178-203 8-33 (191)
278 3vaa_A Shikimate kinase, SK; s 94.4 0.022 7.6E-07 54.4 3.6 26 178-203 24-49 (199)
279 2ck3_D ATP synthase subunit be 94.4 0.29 1E-05 52.5 12.4 63 170-234 143-207 (482)
280 3bh0_A DNAB-like replicative h 94.4 0.12 4.2E-06 53.2 9.4 52 178-234 67-118 (315)
281 3dm5_A SRP54, signal recogniti 94.3 0.21 7.1E-06 53.6 11.2 26 178-203 99-124 (443)
282 1ly1_A Polynucleotide kinase; 94.3 0.025 8.6E-07 52.9 3.7 22 180-201 3-24 (181)
283 3cf2_A TER ATPase, transitiona 94.3 0.042 1.4E-06 63.7 6.1 171 158-355 477-682 (806)
284 3sr0_A Adenylate kinase; phosp 94.3 0.095 3.2E-06 50.2 7.7 23 181-203 2-24 (206)
285 1kag_A SKI, shikimate kinase I 94.3 0.021 7.2E-07 53.1 3.0 24 180-203 5-28 (173)
286 1kgd_A CASK, peripheral plasma 94.3 0.028 9.4E-07 52.8 3.8 25 179-203 5-29 (180)
287 3uie_A Adenylyl-sulfate kinase 94.2 0.032 1.1E-06 53.4 4.2 27 177-203 23-49 (200)
288 3fwy_A Light-independent proto 94.2 0.027 9.1E-07 58.0 3.8 41 177-220 46-86 (314)
289 3trf_A Shikimate kinase, SK; a 94.2 0.027 9.1E-07 53.1 3.5 25 179-203 5-29 (185)
290 3hws_A ATP-dependent CLP prote 94.2 0.041 1.4E-06 58.2 5.4 45 159-203 16-75 (363)
291 1sky_E F1-ATPase, F1-ATP synth 94.1 0.16 5.4E-06 54.7 9.7 52 180-233 152-204 (473)
292 1nks_A Adenylate kinase; therm 94.0 0.029 1E-06 53.1 3.6 24 180-203 2-25 (194)
293 3e70_C DPA, signal recognition 94.0 0.15 5.1E-06 52.7 9.1 58 177-237 127-185 (328)
294 2yvu_A Probable adenylyl-sulfa 94.0 0.031 1.1E-06 52.7 3.7 26 178-203 12-37 (186)
295 1um8_A ATP-dependent CLP prote 94.0 0.048 1.7E-06 58.0 5.5 46 158-203 21-96 (376)
296 1g8p_A Magnesium-chelatase 38 94.0 0.023 7.9E-07 59.8 3.0 46 158-203 24-69 (350)
297 2ga8_A Hypothetical 39.9 kDa p 94.0 0.062 2.1E-06 55.6 6.0 43 161-203 2-48 (359)
298 2rhm_A Putative kinase; P-loop 94.0 0.033 1.1E-06 52.7 3.8 25 179-203 5-29 (193)
299 1odf_A YGR205W, hypothetical 3 94.0 0.057 1.9E-06 54.9 5.6 27 177-203 29-55 (290)
300 3kl4_A SRP54, signal recogniti 93.9 0.24 8.2E-06 53.0 10.7 26 178-203 96-121 (433)
301 3t61_A Gluconokinase; PSI-biol 93.9 0.027 9.1E-07 54.0 2.9 25 179-203 18-42 (202)
302 2ffh_A Protein (FFH); SRP54, s 93.9 0.15 5E-06 54.6 8.8 25 179-203 98-122 (425)
303 3iij_A Coilin-interacting nucl 93.8 0.029 1E-06 52.5 3.1 25 179-203 11-35 (180)
304 4eun_A Thermoresistant glucoki 93.8 0.035 1.2E-06 53.1 3.6 26 178-203 28-53 (200)
305 1kht_A Adenylate kinase; phosp 93.8 0.033 1.1E-06 52.7 3.4 24 180-203 4-27 (192)
306 1knq_A Gluconate kinase; ALFA/ 93.8 0.038 1.3E-06 51.4 3.7 25 179-203 8-32 (175)
307 2xxa_A Signal recognition part 93.8 0.2 6.8E-06 53.9 9.7 91 178-270 99-192 (433)
308 2dr3_A UPF0273 protein PH0284; 93.7 0.12 4.1E-06 51.0 7.6 40 178-220 22-61 (247)
309 1ex7_A Guanylate kinase; subst 93.7 0.027 9.1E-07 53.0 2.5 24 180-203 2-25 (186)
310 3tau_A Guanylate kinase, GMP k 93.7 0.04 1.4E-06 53.0 3.8 26 178-203 7-32 (208)
311 2ze6_A Isopentenyl transferase 93.7 0.037 1.3E-06 55.2 3.6 24 180-203 2-25 (253)
312 1fx0_B ATP synthase beta chain 93.7 0.2 6.9E-06 54.0 9.4 100 170-271 155-276 (498)
313 3tr0_A Guanylate kinase, GMP k 93.7 0.037 1.3E-06 53.1 3.5 25 179-203 7-31 (205)
314 1ye8_A Protein THEP1, hypothet 93.6 0.038 1.3E-06 51.6 3.5 23 181-203 2-24 (178)
315 2qor_A Guanylate kinase; phosp 93.6 0.034 1.2E-06 53.3 3.2 26 178-203 11-36 (204)
316 1via_A Shikimate kinase; struc 93.6 0.031 1.1E-06 52.1 2.8 24 180-203 5-28 (175)
317 2jaq_A Deoxyguanosine kinase; 93.6 0.037 1.3E-06 53.0 3.4 23 181-203 2-24 (205)
318 1tev_A UMP-CMP kinase; ploop, 93.6 0.041 1.4E-06 52.2 3.7 25 179-203 3-27 (196)
319 2bdt_A BH3686; alpha-beta prot 93.6 0.042 1.4E-06 51.9 3.7 23 180-202 3-25 (189)
320 1y63_A LMAJ004144AAA protein; 93.5 0.044 1.5E-06 51.6 3.7 24 179-202 10-33 (184)
321 2c95_A Adenylate kinase 1; tra 93.5 0.042 1.5E-06 52.1 3.6 26 178-203 8-33 (196)
322 3umf_A Adenylate kinase; rossm 93.5 0.046 1.6E-06 52.8 3.7 26 178-203 28-53 (217)
323 3asz_A Uridine kinase; cytidin 93.4 0.047 1.6E-06 52.6 3.9 26 178-203 5-30 (211)
324 2bbw_A Adenylate kinase 4, AK4 93.4 0.043 1.5E-06 54.4 3.6 26 178-203 26-51 (246)
325 1ukz_A Uridylate kinase; trans 93.4 0.052 1.8E-06 51.9 4.1 26 178-203 14-39 (203)
326 3a00_A Guanylate kinase, GMP k 93.4 0.036 1.2E-06 52.3 2.8 24 180-203 2-25 (186)
327 2j41_A Guanylate kinase; GMP, 93.4 0.047 1.6E-06 52.4 3.7 25 179-203 6-30 (207)
328 1zuh_A Shikimate kinase; alpha 93.4 0.046 1.6E-06 50.5 3.5 26 178-203 6-31 (168)
329 2if2_A Dephospho-COA kinase; a 93.3 0.044 1.5E-06 52.5 3.4 22 180-201 2-23 (204)
330 3cm0_A Adenylate kinase; ATP-b 93.3 0.047 1.6E-06 51.4 3.6 25 179-203 4-28 (186)
331 3tqc_A Pantothenate kinase; bi 93.3 0.081 2.8E-06 54.3 5.5 43 161-203 70-116 (321)
332 2iyv_A Shikimate kinase, SK; t 93.3 0.036 1.2E-06 52.1 2.7 24 180-203 3-26 (184)
333 1j8m_F SRP54, signal recogniti 93.3 0.17 5.8E-06 51.5 7.9 89 179-270 98-189 (297)
334 1uf9_A TT1252 protein; P-loop, 93.3 0.056 1.9E-06 51.6 4.0 26 177-202 6-31 (203)
335 3ney_A 55 kDa erythrocyte memb 93.2 0.054 1.8E-06 51.3 3.7 26 178-203 18-43 (197)
336 2plr_A DTMP kinase, probable t 93.2 0.052 1.8E-06 52.3 3.8 25 179-203 4-28 (213)
337 1gvn_B Zeta; postsegregational 93.2 0.084 2.9E-06 53.6 5.5 26 178-203 32-57 (287)
338 1cke_A CK, MSSA, protein (cyti 93.2 0.046 1.6E-06 53.4 3.4 24 180-203 6-29 (227)
339 2qt1_A Nicotinamide riboside k 93.2 0.054 1.9E-06 52.0 3.8 26 178-203 20-45 (207)
340 2yhs_A FTSY, cell division pro 93.2 0.29 9.8E-06 53.0 9.7 26 178-203 292-317 (503)
341 2bwj_A Adenylate kinase 5; pho 93.2 0.049 1.7E-06 51.9 3.5 25 179-203 12-36 (199)
342 3tlx_A Adenylate kinase 2; str 93.1 0.1 3.4E-06 51.6 5.8 27 177-203 27-53 (243)
343 1g41_A Heat shock protein HSLU 93.1 0.069 2.3E-06 57.3 4.8 46 158-203 15-74 (444)
344 1e6c_A Shikimate kinase; phosp 93.1 0.044 1.5E-06 50.8 2.9 24 180-203 3-26 (173)
345 1lvg_A Guanylate kinase, GMP k 93.1 0.043 1.5E-06 52.4 2.9 25 179-203 4-28 (198)
346 4gp7_A Metallophosphoesterase; 93.1 0.048 1.7E-06 50.6 3.2 23 178-200 8-30 (171)
347 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.058 2E-06 54.0 3.9 25 179-203 4-28 (260)
348 1uj2_A Uridine-cytidine kinase 93.0 0.06 2E-06 53.6 4.0 26 178-203 21-46 (252)
349 1ls1_A Signal recognition part 93.0 0.21 7.2E-06 50.8 8.1 89 179-270 98-189 (295)
350 2pt5_A Shikimate kinase, SK; a 93.0 0.054 1.8E-06 50.0 3.4 23 181-203 2-24 (168)
351 3cmu_A Protein RECA, recombina 93.0 0.14 4.9E-06 64.7 8.0 86 178-271 1426-1515(2050)
352 2vli_A Antibiotic resistance p 93.0 0.038 1.3E-06 51.8 2.4 25 179-203 5-29 (183)
353 1jjv_A Dephospho-COA kinase; P 93.0 0.054 1.8E-06 52.0 3.5 22 180-201 3-24 (206)
354 2cdn_A Adenylate kinase; phosp 93.0 0.056 1.9E-06 51.6 3.6 26 178-203 19-44 (201)
355 1qf9_A UMP/CMP kinase, protein 92.9 0.06 2E-06 50.9 3.7 25 179-203 6-30 (194)
356 1tue_A Replication protein E1; 92.9 0.082 2.8E-06 49.9 4.4 37 167-203 45-82 (212)
357 2pbr_A DTMP kinase, thymidylat 92.9 0.057 1.9E-06 51.1 3.4 23 181-203 2-24 (195)
358 2j37_W Signal recognition part 92.8 0.54 1.8E-05 51.4 11.5 26 178-203 100-125 (504)
359 2wwf_A Thymidilate kinase, put 92.8 0.063 2.1E-06 51.7 3.6 25 179-203 10-34 (212)
360 1xjc_A MOBB protein homolog; s 92.8 0.065 2.2E-06 49.3 3.5 26 178-203 3-28 (169)
361 1znw_A Guanylate kinase, GMP k 92.8 0.061 2.1E-06 51.7 3.5 26 178-203 19-44 (207)
362 1htw_A HI0065; nucleotide-bind 92.8 0.07 2.4E-06 48.7 3.7 27 177-203 31-57 (158)
363 1zd8_A GTP:AMP phosphotransfer 92.7 0.063 2.2E-06 52.4 3.6 25 179-203 7-31 (227)
364 1zu4_A FTSY; GTPase, signal re 92.7 0.15 5.1E-06 52.5 6.5 26 178-203 104-129 (320)
365 1aky_A Adenylate kinase; ATP:A 92.7 0.066 2.3E-06 52.0 3.6 25 179-203 4-28 (220)
366 2grj_A Dephospho-COA kinase; T 92.7 0.071 2.4E-06 50.4 3.7 26 178-203 11-36 (192)
367 3aez_A Pantothenate kinase; tr 92.7 0.072 2.5E-06 54.7 4.0 27 177-203 88-114 (312)
368 1nn5_A Similar to deoxythymidy 92.6 0.068 2.3E-06 51.6 3.6 25 179-203 9-33 (215)
369 2p5t_B PEZT; postsegregational 92.6 0.087 3E-06 52.4 4.5 26 178-203 31-56 (253)
370 2jeo_A Uridine-cytidine kinase 92.6 0.078 2.7E-06 52.5 4.0 26 178-203 24-49 (245)
371 1z6g_A Guanylate kinase; struc 92.4 0.059 2E-06 52.3 2.9 26 178-203 22-47 (218)
372 4e22_A Cytidylate kinase; P-lo 92.4 0.071 2.4E-06 53.1 3.5 26 178-203 26-51 (252)
373 3fb4_A Adenylate kinase; psych 92.4 0.07 2.4E-06 51.6 3.4 23 181-203 2-24 (216)
374 4a1f_A DNAB helicase, replicat 92.4 0.3 1E-05 50.5 8.3 52 178-234 45-96 (338)
375 2v54_A DTMP kinase, thymidylat 92.4 0.079 2.7E-06 50.6 3.8 25 179-203 4-28 (204)
376 3dl0_A Adenylate kinase; phosp 92.4 0.075 2.6E-06 51.4 3.6 23 181-203 2-24 (216)
377 3l0o_A Transcription terminati 92.3 0.057 2E-06 56.1 2.6 52 169-221 164-216 (427)
378 1gtv_A TMK, thymidylate kinase 92.2 0.044 1.5E-06 52.9 1.7 24 180-203 1-24 (214)
379 2z0h_A DTMP kinase, thymidylat 92.2 0.081 2.8E-06 50.2 3.5 23 181-203 2-24 (197)
380 1rj9_A FTSY, signal recognitio 92.2 0.083 2.8E-06 54.0 3.8 26 178-203 101-126 (304)
381 1s96_A Guanylate kinase, GMP k 92.2 0.08 2.7E-06 51.3 3.5 26 178-203 15-40 (219)
382 1zak_A Adenylate kinase; ATP:A 92.2 0.072 2.5E-06 51.8 3.2 25 179-203 5-29 (222)
383 2pez_A Bifunctional 3'-phospho 92.1 0.098 3.4E-06 48.8 3.9 25 179-203 5-29 (179)
384 1m7g_A Adenylylsulfate kinase; 92.0 0.15 5.2E-06 49.0 5.2 27 177-203 23-49 (211)
385 3end_A Light-independent proto 91.9 0.12 4.2E-06 53.0 4.7 41 177-220 39-79 (307)
386 2i3b_A HCR-ntpase, human cance 91.9 0.078 2.7E-06 50.0 2.9 24 180-203 2-25 (189)
387 3p32_A Probable GTPase RV1496/ 91.9 0.18 6.2E-06 53.0 6.0 37 167-203 65-103 (355)
388 1vht_A Dephospho-COA kinase; s 91.8 0.11 3.6E-06 50.4 3.9 23 179-201 4-26 (218)
389 3k1j_A LON protease, ATP-depen 91.6 0.13 4.6E-06 58.3 5.0 44 158-203 41-84 (604)
390 3r20_A Cytidylate kinase; stru 91.6 0.1 3.5E-06 50.8 3.5 25 179-203 9-33 (233)
391 2f1r_A Molybdopterin-guanine d 91.6 0.066 2.3E-06 49.5 2.0 24 180-203 3-26 (171)
392 3nwj_A ATSK2; P loop, shikimat 91.6 0.09 3.1E-06 52.0 3.1 25 179-203 48-72 (250)
393 1sq5_A Pantothenate kinase; P- 91.5 0.2 6.9E-06 51.4 5.8 27 177-203 78-104 (308)
394 2ehv_A Hypothetical protein PH 91.5 0.097 3.3E-06 51.8 3.3 24 178-201 29-52 (251)
395 1np6_A Molybdopterin-guanine d 91.5 0.12 4.2E-06 47.8 3.8 26 178-203 5-30 (174)
396 3b9q_A Chloroplast SRP recepto 91.4 0.12 4.1E-06 52.8 3.9 26 178-203 99-124 (302)
397 3be4_A Adenylate kinase; malar 91.4 0.11 3.6E-06 50.4 3.4 24 180-203 6-29 (217)
398 2f6r_A COA synthase, bifunctio 91.4 0.12 4E-06 52.4 3.8 24 178-201 74-97 (281)
399 3d3q_A TRNA delta(2)-isopenten 91.4 0.12 4E-06 53.4 3.8 24 180-203 8-31 (340)
400 2onk_A Molybdate/tungstate ABC 91.4 0.11 3.8E-06 51.1 3.5 26 177-203 23-48 (240)
401 3ake_A Cytidylate kinase; CMP 91.3 0.11 3.8E-06 49.7 3.4 24 180-203 3-26 (208)
402 2xb4_A Adenylate kinase; ATP-b 91.3 0.11 3.8E-06 50.5 3.4 23 181-203 2-24 (223)
403 3vr4_D V-type sodium ATPase su 91.3 0.28 9.4E-06 52.3 6.6 91 180-271 152-258 (465)
404 1e4v_A Adenylate kinase; trans 91.2 0.11 3.9E-06 50.0 3.4 23 181-203 2-24 (214)
405 1ak2_A Adenylate kinase isoenz 91.1 0.12 4.2E-06 50.5 3.6 25 179-203 16-40 (233)
406 3exa_A TRNA delta(2)-isopenten 91.1 0.14 4.8E-06 51.9 3.9 25 179-203 3-27 (322)
407 3gqb_B V-type ATP synthase bet 91.1 0.23 7.8E-06 52.9 5.7 92 179-271 147-261 (464)
408 3crm_A TRNA delta(2)-isopenten 91.1 0.13 4.5E-06 52.6 3.7 25 179-203 5-29 (323)
409 3lnc_A Guanylate kinase, GMP k 91.0 0.086 2.9E-06 51.6 2.3 25 179-203 27-52 (231)
410 2pcj_A ABC transporter, lipopr 91.0 0.1 3.5E-06 50.8 2.8 26 178-203 29-54 (224)
411 3iqw_A Tail-anchored protein t 90.9 0.29 1E-05 50.7 6.3 46 174-222 11-56 (334)
412 3a8t_A Adenylate isopentenyltr 90.9 0.14 4.8E-06 52.6 3.8 26 178-203 39-64 (339)
413 3tif_A Uncharacterized ABC tra 90.9 0.13 4.6E-06 50.4 3.5 26 178-203 30-55 (235)
414 1oix_A RAS-related protein RAB 90.9 0.13 4.5E-06 48.5 3.4 25 179-203 29-53 (191)
415 1yrb_A ATP(GTP)binding protein 90.9 0.14 4.9E-06 51.0 3.9 26 178-203 13-38 (262)
416 4eaq_A DTMP kinase, thymidylat 90.8 0.25 8.5E-06 48.2 5.4 26 178-203 25-50 (229)
417 3cmu_A Protein RECA, recombina 90.7 0.42 1.4E-05 60.6 8.4 86 178-271 382-471 (2050)
418 3io3_A DEHA2D07832P; chaperone 90.6 0.26 8.7E-06 51.4 5.6 47 174-221 13-59 (348)
419 3b85_A Phosphate starvation-in 90.6 0.1 3.5E-06 50.1 2.3 24 179-202 22-45 (208)
420 3gfo_A Cobalt import ATP-bindi 90.5 0.18 6.3E-06 50.6 4.2 26 178-203 33-58 (275)
421 2wji_A Ferrous iron transport 90.5 0.16 5.3E-06 46.6 3.4 23 180-202 4-26 (165)
422 2og2_A Putative signal recogni 90.4 0.16 5.6E-06 53.0 3.9 26 178-203 156-181 (359)
423 2cbz_A Multidrug resistance-as 90.4 0.14 4.7E-06 50.3 3.2 26 178-203 30-55 (237)
424 2dyk_A GTP-binding protein; GT 90.4 0.17 5.7E-06 45.9 3.6 24 180-203 2-25 (161)
425 2d2e_A SUFC protein; ABC-ATPas 90.4 0.15 5E-06 50.6 3.3 25 178-202 28-52 (250)
426 2q6t_A DNAB replication FORK h 90.4 0.92 3.1E-05 49.1 10.0 52 178-233 199-250 (444)
427 1b0u_A Histidine permease; ABC 90.3 0.14 4.8E-06 51.1 3.2 26 178-203 31-56 (262)
428 3cmw_A Protein RECA, recombina 90.3 0.37 1.3E-05 60.3 7.3 83 180-270 384-470 (1706)
429 2f9l_A RAB11B, member RAS onco 90.3 0.15 5.1E-06 48.4 3.2 25 179-203 5-29 (199)
430 4gzl_A RAS-related C3 botulinu 90.2 0.17 5.9E-06 48.2 3.6 39 165-203 16-54 (204)
431 1ji0_A ABC transporter; ATP bi 90.2 0.13 4.5E-06 50.6 2.8 26 178-203 31-56 (240)
432 2ff7_A Alpha-hemolysin translo 90.2 0.2 7E-06 49.4 4.2 26 178-203 34-59 (247)
433 3foz_A TRNA delta(2)-isopenten 90.2 0.19 6.5E-06 50.8 4.0 26 178-203 9-34 (316)
434 2zu0_C Probable ATP-dependent 90.1 0.16 5.3E-06 51.0 3.3 25 178-202 45-69 (267)
435 1sgw_A Putative ABC transporte 90.1 0.11 3.9E-06 49.9 2.2 26 178-203 34-59 (214)
436 3oaa_A ATP synthase subunit al 90.1 3.3 0.00011 44.6 13.5 98 170-271 152-264 (513)
437 2pze_A Cystic fibrosis transme 90.1 0.14 4.7E-06 50.0 2.8 26 178-203 33-58 (229)
438 4g1u_C Hemin import ATP-bindin 90.1 0.14 4.6E-06 51.3 2.8 26 178-203 36-61 (266)
439 2eyu_A Twitching motility prot 90.1 0.19 6.6E-06 50.0 4.0 27 177-203 23-49 (261)
440 2v9p_A Replication protein E1; 90.1 0.18 6E-06 51.4 3.7 27 177-203 124-150 (305)
441 1g6h_A High-affinity branched- 90.1 0.14 4.7E-06 51.1 2.8 26 178-203 32-57 (257)
442 1ltq_A Polynucleotide kinase; 90.0 0.17 5.8E-06 51.8 3.6 23 180-202 3-25 (301)
443 2olj_A Amino acid ABC transpor 90.0 0.15 5.2E-06 50.8 3.2 26 178-203 49-74 (263)
444 1mv5_A LMRA, multidrug resista 90.0 0.15 5E-06 50.4 3.0 26 178-203 27-52 (243)
445 2ce2_X GTPase HRAS; signaling 90.0 0.16 5.6E-06 46.0 3.2 23 181-203 5-27 (166)
446 1g8f_A Sulfate adenylyltransfe 90.0 0.24 8.4E-06 54.2 4.9 44 160-203 374-419 (511)
447 2ixe_A Antigen peptide transpo 90.0 0.22 7.4E-06 50.0 4.2 26 178-203 44-69 (271)
448 2zej_A Dardarin, leucine-rich 89.9 0.13 4.4E-06 48.2 2.4 22 181-202 4-25 (184)
449 2r8r_A Sensor protein; KDPD, P 89.8 0.23 7.9E-06 47.7 4.0 24 180-203 7-30 (228)
450 1zj6_A ADP-ribosylation factor 89.8 0.32 1.1E-05 45.4 5.1 34 168-202 6-39 (187)
451 1vpl_A ABC transporter, ATP-bi 89.7 0.17 5.8E-06 50.3 3.2 26 178-203 40-65 (256)
452 2ghi_A Transport protein; mult 89.6 0.16 5.3E-06 50.7 2.8 26 178-203 45-70 (260)
453 1z2a_A RAS-related protein RAB 89.6 0.18 6.2E-06 46.0 3.1 25 179-203 5-29 (168)
454 2qi9_C Vitamin B12 import ATP- 89.6 0.16 5.4E-06 50.3 2.8 26 178-203 25-50 (249)
455 1cp2_A CP2, nitrogenase iron p 89.6 0.32 1.1E-05 48.7 5.2 38 180-220 2-39 (269)
456 2wjg_A FEOB, ferrous iron tran 89.6 0.21 7.2E-06 46.7 3.6 23 180-202 8-30 (188)
457 1fx0_A ATP synthase alpha chai 89.6 0.52 1.8E-05 50.9 7.0 87 178-271 162-265 (507)
458 1nlf_A Regulatory protein REPA 89.5 0.18 6.1E-06 51.0 3.2 26 178-203 29-54 (279)
459 3zvl_A Bifunctional polynucleo 89.5 0.18 6.1E-06 54.2 3.4 27 177-203 256-282 (416)
460 2qmh_A HPR kinase/phosphorylas 89.5 0.19 6.4E-06 47.2 3.0 25 179-203 34-58 (205)
461 3f9v_A Minichromosome maintena 89.4 0.1 3.6E-06 58.8 1.5 46 158-203 295-351 (595)
462 2ocp_A DGK, deoxyguanosine kin 89.4 0.23 8E-06 48.8 3.9 25 179-203 2-26 (241)
463 3upu_A ATP-dependent DNA helic 89.4 0.39 1.3E-05 52.4 6.1 37 166-203 33-69 (459)
464 1q3t_A Cytidylate kinase; nucl 89.4 0.23 7.7E-06 48.7 3.8 26 178-203 15-40 (236)
465 2yz2_A Putative ABC transporte 89.4 0.17 5.7E-06 50.7 2.8 26 178-203 32-57 (266)
466 1a7j_A Phosphoribulokinase; tr 89.4 0.1 3.5E-06 53.0 1.3 26 178-203 4-29 (290)
467 2nq2_C Hypothetical ABC transp 89.3 0.17 5.7E-06 50.3 2.8 26 178-203 30-55 (253)
468 1svm_A Large T antigen; AAA+ f 89.3 0.22 7.5E-06 52.4 3.8 27 177-203 167-193 (377)
469 1u0j_A DNA replication protein 89.3 0.39 1.3E-05 47.5 5.3 36 168-203 91-128 (267)
470 3con_A GTPase NRAS; structural 89.2 0.2 6.8E-06 47.0 3.2 24 180-203 22-45 (190)
471 2ihy_A ABC transporter, ATP-bi 89.2 0.17 5.8E-06 51.0 2.8 26 178-203 46-71 (279)
472 2c61_A A-type ATP synthase non 89.2 0.42 1.4E-05 51.3 5.9 100 170-270 142-258 (469)
473 3sop_A Neuronal-specific septi 89.2 0.21 7.2E-06 50.1 3.4 23 181-203 4-26 (270)
474 3lv8_A DTMP kinase, thymidylat 89.1 0.45 1.5E-05 46.4 5.6 25 179-203 27-51 (236)
475 2ged_A SR-beta, signal recogni 89.1 0.25 8.6E-06 46.4 3.8 26 178-203 47-72 (193)
476 3hjn_A DTMP kinase, thymidylat 89.1 0.5 1.7E-05 44.7 5.8 23 181-203 2-24 (197)
477 1u8z_A RAS-related protein RAL 89.0 0.21 7.4E-06 45.4 3.2 24 180-203 5-28 (168)
478 1cr0_A DNA primase/helicase; R 89.0 0.21 7.1E-06 51.0 3.3 26 178-203 34-59 (296)
479 2nzj_A GTP-binding protein REM 88.9 0.19 6.6E-06 46.2 2.8 25 179-203 4-28 (175)
480 1p9r_A General secretion pathw 88.9 0.6 2.1E-05 49.9 6.9 34 169-203 158-191 (418)
481 2qe7_A ATP synthase subunit al 88.9 1.2 4E-05 48.2 9.0 97 170-271 152-264 (502)
482 3bgw_A DNAB-like replicative h 88.7 0.76 2.6E-05 49.6 7.7 51 178-233 196-246 (444)
483 4edh_A DTMP kinase, thymidylat 88.7 0.6 2.1E-05 44.8 6.2 33 179-213 6-38 (213)
484 2gj8_A MNME, tRNA modification 88.7 0.22 7.5E-06 46.0 3.0 24 180-203 5-28 (172)
485 1z08_A RAS-related protein RAB 88.7 0.23 7.9E-06 45.4 3.1 24 180-203 7-30 (170)
486 1m7b_A RND3/RHOE small GTP-bin 88.7 0.23 7.8E-06 46.4 3.2 25 179-203 7-31 (184)
487 2vp4_A Deoxynucleoside kinase; 88.7 0.19 6.3E-06 49.2 2.6 25 178-202 19-43 (230)
488 1tq4_A IIGP1, interferon-induc 88.6 0.35 1.2E-05 51.5 4.8 25 178-202 68-92 (413)
489 2lkc_A Translation initiation 88.6 0.28 9.5E-06 45.3 3.7 26 178-203 7-32 (178)
490 1c1y_A RAS-related protein RAP 88.6 0.24 8.1E-06 45.1 3.1 23 181-203 5-27 (167)
491 1r8s_A ADP-ribosylation factor 88.6 0.25 8.6E-06 44.9 3.3 23 181-203 2-24 (164)
492 1ek0_A Protein (GTP-binding pr 88.6 0.24 8.2E-06 45.2 3.2 23 181-203 5-27 (170)
493 1z0j_A RAB-22, RAS-related pro 88.6 0.24 8.2E-06 45.2 3.2 24 180-203 7-30 (170)
494 3mfy_A V-type ATP synthase alp 88.6 1.2 4E-05 48.6 8.8 57 170-231 217-275 (588)
495 1kao_A RAP2A; GTP-binding prot 88.6 0.24 8.3E-06 45.0 3.2 24 180-203 4-27 (167)
496 3kjh_A CO dehydrogenase/acetyl 88.5 0.43 1.5E-05 47.0 5.3 41 181-224 2-42 (254)
497 3ihw_A Centg3; RAS, centaurin, 88.5 0.24 8.2E-06 46.3 3.2 25 179-203 20-44 (184)
498 3cr8_A Sulfate adenylyltranfer 88.4 0.34 1.2E-05 53.8 4.7 26 178-203 368-393 (552)
499 4tmk_A Protein (thymidylate ki 88.4 0.52 1.8E-05 45.2 5.5 52 180-233 4-55 (213)
500 3eph_A TRNA isopentenyltransfe 88.4 0.28 9.4E-06 51.7 3.7 25 179-203 2-26 (409)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2e-47 Score=435.38 Aligned_cols=313 Identities=15% Similarity=0.158 Sum_probs=253.5
Q ss_pred CcccchhHHHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHh--hcccCCCCCCEEEEEEecCcc--CHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEE---SVGIIGLYGMGGVGKTTLLTHINN--KFLESPTSFDCVIWAVVSKDL--RLEKIQED 230 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~ 230 (813)
+..|||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. ++..+|+.++||++++.. ++..++..
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 33359999999999999753 579999999999999999999998 44 567899999999999985 78999999
Q ss_pred HHHHcCCCCC-----ccCCCCHHHHHHHHHHHhcCC-cEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCcccccc
Q 041248 231 IGKKIGLVDD-----SWKSKSVEEKALDIFRSLREK-RFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVCG 304 (813)
Q Consensus 231 i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~ 304 (813)
|+.+++.... .....+..++...+++.++++ ||||||||||+..++ .+ + ..+||+||||||+..++.
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~-----~-~~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW-----A-QELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH-----H-HHTTCEEEEEESBGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc-----c-ccCCCEEEEEcCCHHHHH
Confidence 9999986421 112345667889999999996 999999999997654 11 1 227999999999999988
Q ss_pred cCC-CCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 041248 305 SME-ADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKTAEEWIHAIEVLR 383 (813)
Q Consensus 305 ~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~ 383 (813)
.++ ....|+|++|++++||+||.+.++... .++++++++++|+++|+|+||||+++|+.++.+ + |... +.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~ 352 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLN 352 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhH
Confidence 776 346799999999999999999987653 246788899999999999999999999999764 3 5443 4454
Q ss_pred chhhhccCchHHHHhHHHHhhcCCChhhHHHHHh-----------hhccCCCCccccHHHHHHHHHHc--CCccccc-cc
Q 041248 384 TSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFL-----------YCCLYPEDYDILKWDLIDCWIGE--GFLEESD-RF 449 (813)
Q Consensus 384 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~ 449 (813)
+..+... ...+..++.+||+.||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ ..
T Consensus 353 ~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 353 NKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred HHhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC
Confidence 4433322 23688899999999998 8999999 999999999999 8999999 9998744 55
Q ss_pred chHhhHHHHHHHHHHhcccceec---CCcEEEeHHHHHHHHHHHhhh
Q 041248 450 SAENQGYYIVGTLVHACLLEEVE---DDKVKMHDVVRDMALWIACEI 493 (813)
Q Consensus 450 ~~~~~~~~~l~~L~~~~ll~~~~---~~~~~mHdlv~~~a~~~~~~~ 493 (813)
..++.++ |+++|+++||+++.. ...|+|||+||++|++++.+.
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 6677777 999999999999862 457999999999999887664
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1e-38 Score=365.62 Aligned_cols=286 Identities=17% Similarity=0.231 Sum_probs=229.2
Q ss_pred CcccchhHHHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEecCccCHHHHHHHHHHHc
Q 041248 158 PTIVGLQSQLEQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDC-VIWAVVSKDLRLEKIQEDIGKKI 235 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 235 (813)
+..|||+.++++|.++|.+ +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|++.+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4459999999999999976 568999999999999999999999875 45678886 99999999999888888887754
Q ss_pred CCCCCc----cC-----CCCHHHHHHHHHHHh---cCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCccccc
Q 041248 236 GLVDDS----WK-----SKSVEEKALDIFRSL---REKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVC 303 (813)
Q Consensus 236 ~~~~~~----~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~ 303 (813)
+..... .. ..+.++....+++.+ .++|+||||||||+...|+.+ + +||+||||||+..++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-----~---pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----N---LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-----H---SSCCEEEECSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-----C---CCeEEEEeccChHHH
Confidence 321100 00 112344566677655 689999999999998877754 2 689999999999987
Q ss_pred ccCCCCcceEcC------CCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCC-CHHHHH
Q 041248 304 GSMEADKKFQVA------CLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKK-TAEEWI 376 (813)
Q Consensus 304 ~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~-~~~~w~ 376 (813)
..+.....|.++ +|+++|||+||.+.++... .++..+| |+|+||||+++|+.|+.+. +..+|+
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 644433456676 9999999999999854321 1233333 9999999999999999863 778887
Q ss_pred HHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhH-HHHHhhhccCCCCccccHHHHHHHHHHcCCcccccccchHhhH
Q 041248 377 HAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETI-RSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEESDRFSAENQG 455 (813)
Q Consensus 377 ~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 455 (813)
.. ....+..++.+||+.||+ +. |.||++||+||+++.|+++.++.+|+++| ++.+
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred cC-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHH
Confidence 52 125899999999999999 78 99999999999999999999999998876 1357
Q ss_pred HHHHHHHHHhccccee-cCCcEEEeHHHHHHH
Q 041248 456 YYIVGTLVHACLLEEV-EDDKVKMHDVVRDMA 486 (813)
Q Consensus 456 ~~~l~~L~~~~ll~~~-~~~~~~mHdlv~~~a 486 (813)
+.++++|+++||++.. +...|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 8899999999999986 457899999999855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-36 Score=382.39 Aligned_cols=312 Identities=20% Similarity=0.245 Sum_probs=252.2
Q ss_pred CCCCcccchhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCC-CCCEEEEEEecCccC--HHHHHH
Q 041248 155 PTEPTIVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPT-SFDCVIWAVVSKDLR--LEKIQE 229 (813)
Q Consensus 155 ~~~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~~--~~~~~~ 229 (813)
+..+.||||++++++|.++|.. +..++|+|+||||+||||||+++|++...... .|+.++|+++++... ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 3346799999999999999963 56899999999999999999999987522233 556788999988543 445567
Q ss_pred HHHHHcCCCCC--ccCCCCHHHHHHHHHHHhcCC--cEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCccccccc
Q 041248 230 DIGKKIGLVDD--SWKSKSVEEKALDIFRSLREK--RFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVCGS 305 (813)
Q Consensus 230 ~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~~ 305 (813)
.++..++.... .....+.++....++..+.++ |+||||||||+..+|..+ ++|++||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHh
Confidence 77777764332 123457788889999999877 999999999988776643 568999999999999854
Q ss_pred -CCCCcceEcCC-CCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 041248 306 -MEADKKFQVAC-LSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKTAEEWIHAIEVLR 383 (813)
Q Consensus 306 -~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~ 383 (813)
+.....+++.+ |+++++++||...++... +.+.+++++|+++|+|+||||+++|++|+.+. ..|..+++.+.
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHh
Confidence 45667899996 999999999999886433 33446799999999999999999999998754 46888888886
Q ss_pred chhhhc-----cCchHHHHhHHHHhhcCCChhhHHHHHhhhccCCCCccccHHHHHHHHHHcCCcccccccchHhhHHHH
Q 041248 384 TSASEF-----AGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEESDRFSAENQGYYI 458 (813)
Q Consensus 384 ~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~ 458 (813)
...+.. ....+.+..++.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.++ .+.++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~ 414 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDI 414 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHH
Confidence 653221 11224799999999999999 899999999999999999999999999543 4677889
Q ss_pred HHHHHHhcccceecCC---cEEEeHHHHHHHHHHHhh
Q 041248 459 VGTLVHACLLEEVEDD---KVKMHDVVRDMALWIACE 492 (813)
Q Consensus 459 l~~L~~~~ll~~~~~~---~~~mHdlv~~~a~~~~~~ 492 (813)
+++|+++||++..... .|+||++||++++..+.+
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 9999999999976333 599999999999988655
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=333.29 Aligned_cols=305 Identities=20% Similarity=0.267 Sum_probs=236.2
Q ss_pred CCcccchhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccC-CCCC-CEEEEEEecCccCHHHHHHH--
Q 041248 157 EPTIVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLES-PTSF-DCVIWAVVSKDLRLEKIQED-- 230 (813)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~-- 230 (813)
.+.||||+.++++|.+++.. ++.++|+|+||||+||||||++++++. .. ..+| +.++|++++.. +...++..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 46799999999999999973 467899999999999999999999875 32 4567 58999999875 33333333
Q ss_pred -HHHHcCCCC--CccCCCCHHHHHHHHHHHhcC--CcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCccccccc
Q 041248 231 -IGKKIGLVD--DSWKSKSVEEKALDIFRSLRE--KRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDVCGS 305 (813)
Q Consensus 231 -i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~~ 305 (813)
++..++... ......+.+.....+...+.+ +++||||||+|+...+..+ ..+++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcHHHHh
Confidence 344554211 112345667778888888876 7899999999987655432 458999999999988765
Q ss_pred CCCCcceEc---CCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcCCCCHHHHHHHHHHH
Q 041248 306 MEADKKFQV---ACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAFKKTAEEWIHAIEVL 382 (813)
Q Consensus 306 ~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l 382 (813)
+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||..+|+.++... ..|..+++.+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 43 334444 58999999999999987532 22235789999999999999999999998753 3688888887
Q ss_pred hchhhh-----ccCchHHHHhHHHHhhcCCChhhHHHHHhhhccCCCCccccHHHHHHHHHHcCCcccccccchHhhHHH
Q 041248 383 RTSASE-----FAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEESDRFSAENQGYY 457 (813)
Q Consensus 383 ~~~~~~-----~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 457 (813)
...... .......+..++..||+.||+ +.|.||++||+||+++.|+.+.+...|.++ .+.++.
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHH
Confidence 654321 111235799999999999999 799999999999999999999999999432 245678
Q ss_pred HHHHHHHhcccceec---CCcEEEeHHHHHHHHHHH
Q 041248 458 IVGTLVHACLLEEVE---DDKVKMHDVVRDMALWIA 490 (813)
Q Consensus 458 ~l~~L~~~~ll~~~~---~~~~~mHdlv~~~a~~~~ 490 (813)
++++|+++||++... ...|+||+++|++++...
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 899999999998652 247999999999999773
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.3e-21 Score=204.88 Aligned_cols=222 Identities=19% Similarity=0.253 Sum_probs=184.0
Q ss_pred CCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCc
Q 041248 538 TCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLK 617 (813)
Q Consensus 538 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~ 617 (813)
..++++.|+++ ++.+..+|.. +..+++|++|+|++| .+..+|..++++++|++|++++|.++.+|..+.++++|+
T Consensus 79 ~~~~l~~L~L~-~n~l~~lp~~-l~~l~~L~~L~L~~n---~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELR-SVPLPQFPDQ-AFRLSHLQHMTIDAA---GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEE-SSCCSSCCSC-GGGGTTCSEEEEESS---CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred cccceeEEEcc-CCCchhcChh-hhhCCCCCEEECCCC---CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 45778889998 5667788887 566999999999999 788899999999999999999999999999999999999
Q ss_pred EEeccCcccccccchhhhcC---------CCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEc
Q 041248 618 CLNLRWTRMLNKIPRLLISN---------SSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLR 688 (813)
Q Consensus 618 ~L~l~~~~~l~~lp~~~i~~---------L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 688 (813)
+|++++|..+..+|.. ++. +++|++|++++|++..++ ..+..+++|+.|+++.|
T Consensus 154 ~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp----------------~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 154 ELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLP----------------ASIANLQNLKSLKIRNS 216 (328)
T ss_dssp EEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCCCC----------------GGGGGCTTCCEEEEESS
T ss_pred EEECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCcch----------------HhhcCCCCCCEEEccCC
Confidence 9999998788888876 544 999999999988876543 45788899999999988
Q ss_pred chhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceE
Q 041248 689 SYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRV 768 (813)
Q Consensus 689 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L 768 (813)
....++. ....+++|+.|++++|.....++. .+..+++|+.|++++|..+..+ +..+ ..+++|+.|
T Consensus 217 ~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~-p~~~---------~~l~~L~~L 282 (328)
T 4fcg_A 217 PLSALGP---AIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTL-PLDI---------HRLTQLEKL 282 (328)
T ss_dssp CCCCCCG---GGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBC-CTTG---------GGCTTCCEE
T ss_pred CCCcCch---hhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhc-chhh---------hcCCCCCEE
Confidence 8765443 233456899999999877766653 5888999999999998776643 2222 489999999
Q ss_pred eeccCcCCCccc-chhcCCCCceEeeec
Q 041248 769 TMERCHKLKDLT-FLVCAPSLKSLSLYG 795 (813)
Q Consensus 769 ~l~~c~~l~~l~-~l~~l~~L~~L~l~~ 795 (813)
+|++|+.++.+| +++.+++|+.+.+..
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCH
Confidence 999999999999 689999999999874
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=4.9e-20 Score=194.69 Aligned_cols=249 Identities=16% Similarity=0.129 Sum_probs=196.0
Q ss_pred cceeEEecccccccc---c-ccCCCCCceeEEEeeeccccc-cccchhhcCCCcccEEEeccCCccccc-ccCccccCCC
Q 041248 518 ENVRRLSLMQNQIEI---L-SEVPTCPHLLTLFLDFNYKLE-MITDGFFQCMPSLKVLKMSNCGHVKVL-KLPFGMSKLG 591 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~---l-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~-~lp~~i~~L~ 591 (813)
.+++.|+++++.+.. + +.+..+++|++|++++++.+. .+|.. |..+++|++|++++| .+. .+|..+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n---~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT---NVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE---CCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC---eeCCcCCHHHhCCC
Confidence 478999999998874 4 347889999999999644554 56655 899999999999999 777 7899999999
Q ss_pred CCCEEeecCCCCc-ccchhhcCCCCCcEEeccCcccccccchhhhcCCC-CCceeeccccccCCCCCCCccccccCCccc
Q 041248 592 SLQLLDISHAGIR-ELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSS-WLRVLRMFAIGFENSEEPSEDSVLIGGGEV 669 (813)
Q Consensus 592 ~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 669 (813)
+|++|++++|.+. .+|..+..+++|++|++++|.....+|.. ++.++ +|++|++++|.+.+.
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~--------------- 189 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK--------------- 189 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE---------------
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc---------------
Confidence 9999999999998 78999999999999999999543478887 89998 999999998877642
Q ss_pred hhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecc
Q 041248 670 LVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDY 749 (813)
Q Consensus 670 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 749 (813)
....+..++ |+.|+++.|...... ......+++|+.|+++++.-....+ .+..+++|+.|+++++. +....+.+
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~-l~~~~p~~ 263 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNR-IYGTLPQG 263 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSC-CEECCCGG
T ss_pred CChHHhCCc-ccEEECcCCcccCcC--CHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCc-ccCcCChH
Confidence 124466666 999999988765321 1222345689999999864333333 36778999999999854 44334444
Q ss_pred cccCCCCCCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecCchhhh
Q 041248 750 TEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCNAMEE 801 (813)
Q Consensus 750 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~ 801 (813)
+ ..+++|+.|++++|.....+|..+.+++|+.|++++++.+..
T Consensus 264 l---------~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 264 L---------TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp G---------GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred H---------hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 4 378999999999987666888778899999999999887654
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=1.1e-18 Score=187.66 Aligned_cols=272 Identities=17% Similarity=0.171 Sum_probs=173.4
Q ss_pred EEEcCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKV 580 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 580 (813)
+...+..+..++.....++++.|++++|.+..++.+..+++|++|+++ ++.+..++. +..+++|++|++++| .+
T Consensus 49 L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~-~n~i~~~~~--~~~l~~L~~L~l~~n---~i 122 (347)
T 4fmz_A 49 LVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIG-TNKITDISA--LQNLTNLRELYLNED---NI 122 (347)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEECTTS---CC
T ss_pred EEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEcc-CCcccCchH--HcCCCcCCEEECcCC---cc
Confidence 333444555566666677788888888888777667788888888888 445666653 777888888888888 77
Q ss_pred cccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCC----
Q 041248 581 LKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEE---- 656 (813)
Q Consensus 581 ~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~---- 656 (813)
..+|. +..+++|++|++++|.....+..+..+++|++|++++| .+..++. ++.+++|++|++++|.+.+++.
T Consensus 123 ~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l 198 (347)
T 4fmz_A 123 SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDISPLASL 198 (347)
T ss_dssp CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGC
T ss_pred cCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccccccccCC
Confidence 77765 77788888888888844333445778888888888877 4566665 7778888888888776665432
Q ss_pred CCcc-ccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceee
Q 041248 657 PSED-SVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELC 735 (813)
Q Consensus 657 ~~~~-~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~ 735 (813)
..+. ..+..........+..+++|+.|+++.|.....+. ...+++|+.|++++| .+..++ .+..+++|+.|+
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~ 271 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTN-QISDIN--AVKDLTKLKMLN 271 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEE
T ss_pred CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCC-ccCCCh--hHhcCCCcCEEE
Confidence 0000 00000111111225566667777766665544433 222346777777664 333333 366667777777
Q ss_pred ecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCchhhhh
Q 041248 736 IRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNAMEEI 802 (813)
Q Consensus 736 l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i 802 (813)
+++| .+..+ . ....+++|+.|++++|......+ .++.+++|+.|++++|+ ++.+
T Consensus 272 l~~n-~l~~~--~---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 272 VGSN-QISDI--S---------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CCSS-CCCCC--G---------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred ccCC-ccCCC--h---------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 7764 33322 1 12478899999999986433333 46788999999999886 4444
No 8
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=3.9e-19 Score=189.65 Aligned_cols=193 Identities=20% Similarity=0.276 Sum_probs=92.7
Q ss_pred ceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEe
Q 041248 519 NVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLD 597 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~ 597 (813)
.++.+++.++.+..+|.. -.+++++|+++ ++.+..++...|..+++|++|++++| .++.+ |..++++++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINN---KISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-CCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSS---CCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCcc-CCCCCeEEECC-CCcCCEeChhhhccCCCCCEEECCCC---cCCeeCHHHhcCCCCCCEEE
Confidence 344555555555444321 12455555555 33455555444555555555555555 45444 44555555555555
Q ss_pred ecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcC
Q 041248 598 ISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGL 677 (813)
Q Consensus 598 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 677 (813)
+++|.++.+|..+. ++|++|++++| .+..++...++++++|++|+++.|.+.... .....+.++
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~~~l 170 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSG-------------IENGAFQGM 170 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGG-------------BCTTGGGGC
T ss_pred CCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccC-------------cChhhccCC
Confidence 55555555555443 45555555555 344444444555555555555554432210 011234455
Q ss_pred CCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecc
Q 041248 678 RYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRS 738 (813)
Q Consensus 678 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~ 738 (813)
++|+.|+++.|....++... .++|+.|+++++. ++.+....+..+++|+.|++++
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~-----~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSC-----CTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCS
T ss_pred CCcCEEECCCCccccCCccc-----cccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCC
Confidence 55555555544443322111 1345555555432 2222222344455555555554
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=4.3e-19 Score=190.80 Aligned_cols=263 Identities=14% Similarity=0.204 Sum_probs=165.1
Q ss_pred ccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCcc
Q 041248 507 GVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFG 586 (813)
Q Consensus 507 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~ 586 (813)
.+..++.....++++.|++.+|.+..++.+..+++|++|+++ ++.+..++. +..+++|++|++++|. ....+..
T Consensus 77 ~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~-~n~i~~~~~--~~~l~~L~~L~l~~n~---~~~~~~~ 150 (347)
T 4fmz_A 77 QITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN-EDNISDISP--LANLTKMYSLNLGANH---NLSDLSP 150 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECT-TSCCCCCGG--GTTCTTCCEEECTTCT---TCCCCGG
T ss_pred ccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECc-CCcccCchh--hccCCceeEEECCCCC---Ccccccc
Confidence 333344445556666677666666666666666666666666 344555544 5566666666666662 2222334
Q ss_pred ccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCC----CCcc-c
Q 041248 587 MSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEE----PSED-S 661 (813)
Q Consensus 587 i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~----~~~~-~ 661 (813)
+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|++|++.+|.+...+. ..+. .
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 226 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSL 226 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCCCCCCchhhcCCcCCEE
Confidence 5666666666666666665554 556666666666666 3455544 5555566666655555444321 0000 0
Q ss_pred cccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCc
Q 041248 662 VLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVE 741 (813)
Q Consensus 662 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~ 741 (813)
.+.......+..+..+++|+.|+++.|....++. ...+++|+.|++++| .+..++ .+..+++|+.|++++|.
T Consensus 227 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~L~~n~- 298 (347)
T 4fmz_A 227 KIGNNKITDLSPLANLSQLTWLEIGTNQISDINA----VKDLTKLKMLNVGSN-QISDIS--VLNNLSQLNSLFLNNNQ- 298 (347)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSC-
T ss_pred EccCCccCCCcchhcCCCCCEEECCCCccCCChh----HhcCCCcCEEEccCC-ccCCCh--hhcCCCCCCEEECcCCc-
Confidence 0111111122238889999999999888766533 233568999999996 444454 47889999999999864
Q ss_pred cceeeecccccCCCCCCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecCc
Q 041248 742 LEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCN 797 (813)
Q Consensus 742 l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~ 797 (813)
+....+..+. .+++|+.|++++|+ ++.++.+..+++|+.|++++|+
T Consensus 299 l~~~~~~~l~---------~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 299 LGNEDMEVIG---------GLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CCGGGHHHHH---------TCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred CCCcChhHhh---------ccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 4433344333 78999999999987 7777778999999999999986
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=3.9e-19 Score=194.38 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=107.6
Q ss_pred CccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCC
Q 041248 516 GWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGS 592 (813)
Q Consensus 516 ~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~ 592 (813)
....++.+++.++.+..+|. +..+++|++|+++ ++.+..++...|..+++|++|++++| .+..+| ..++++++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFN---AIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS---CCCCCCTTTTTTCTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECC-CCcccccChhhccCCCCcCEEECCCC---CCCcCCHHHhcCCCC
Confidence 34678888888888888765 5678889999998 55677777766888899999999988 777774 45788889
Q ss_pred CCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCC
Q 041248 593 LQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 593 L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
|++|++++|.++.+|.. +.++++|++|++++| .+..++...++.+++|++|++++|.+...
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 99999999988888877 478889999999888 45666655588888999999988877654
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=7.5e-19 Score=197.69 Aligned_cols=150 Identities=26% Similarity=0.291 Sum_probs=121.6
Q ss_pred EEEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCc
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGH 577 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 577 (813)
.+.+.+..+..+|.. -...++.|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|+|++|
T Consensus 15 ~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n-- 90 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFNNLFNLRTLGLRSN-- 90 (477)
T ss_dssp EEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS--
T ss_pred EEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECC-CCccCEeChhhhhCCccCCEEECCCC--
Confidence 455555666667653 3468999999999998874 47889999999999 55677887667999999999999999
Q ss_pred ccccccCc-cccCCCCCCEEeecCCCCccc-chhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCC
Q 041248 578 VKVLKLPF-GMSKLGSLQLLDISHAGIREL-PEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 578 ~~~~~lp~-~i~~L~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
.++.+|. .+.++++|++|+|++|.+..+ |..+..+++|++|++++| .+..++...++.+++|++|++++|.+..++
T Consensus 91 -~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 91 -RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp -CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred -cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 8888875 478899999999999998876 456889999999999998 456665545889999999999988777654
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=192.91 Aligned_cols=268 Identities=19% Similarity=0.211 Sum_probs=199.6
Q ss_pred EEEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHV 578 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (813)
+...+..+..+|.. -.+.++.|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|++++|
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n--- 110 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT-SNGINTIEEDSFSSLGSLEHLDLSYN--- 110 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS---
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECC-CCccCccCHhhcCCCCCCCEEECCCC---
Confidence 44445566666652 33589999999999988764 7889999999999 55788887777999999999999999
Q ss_pred cccccCcc-ccCCCCCCEEeecCCCCcccch--hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCC
Q 041248 579 KVLKLPFG-MSKLGSLQLLDISHAGIRELPE--ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 579 ~~~~lp~~-i~~L~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
.++.+|.. ++++++|++|++++|.++.+|. .+..+++|++|++++|..+..++...++++++|++|++++|.+.+..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 88888866 8899999999999999999987 68899999999999996677776655899999999999988766532
Q ss_pred CCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccc---cccccccc
Q 041248 656 EPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATA---FSDLKHLN 732 (813)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~---l~~l~~L~ 732 (813)
...+..+++|+.|+++.|....++... ...+++|+.|+++++. ++...... ....+.++
T Consensus 191 ---------------~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 191 ---------------PKSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp ---------------TTTTTTCSEEEEEEEECSCSTTHHHHH--HHHTTTEEEEEEESCB-CTTCCCC------CCCCCC
T ss_pred ---------------HHHHhccccCCeecCCCCccccchhhh--hhhcccccEEECCCCc-cccccccccccccccchhh
Confidence 245778899999999998876555432 2234689999999853 33333222 22345667
Q ss_pred eeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCcccc--hhcCCCCceEeeecCch
Q 041248 733 ELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTF--LVCAPSLKSLSLYGCNA 798 (813)
Q Consensus 733 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~ 798 (813)
.++++++. +...... ..+.....+++|+.|++++|. ++.+|. +..+++|++|++++++-
T Consensus 253 ~l~L~~~~-l~~~~l~-----~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 253 KFTFRNVK-ITDESLF-----QVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EEEEESCB-CCHHHHH-----HHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccc-ccCcchh-----hhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 77766532 2210000 001112378899999999974 778884 57899999999998863
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=9.1e-19 Score=195.80 Aligned_cols=151 Identities=23% Similarity=0.293 Sum_probs=124.3
Q ss_pred EEEEcCCccCcCCCccCccceeEEeccccccccc--ccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCc
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEIL--SEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGH 577 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 577 (813)
.+.+.+.++..+|. -.+++++|++++|.+..+ ..+..+++|++|+++++.....+++..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-- 89 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-- 89 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC--
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC--
Confidence 45555667777776 347899999999999886 347899999999999654444677777999999999999999
Q ss_pred cccccc-CccccCCCCCCEEeecCCCCcc-cchh--hcCCCCCcEEeccCccccccc-chhhhcCCCCCceeeccccccC
Q 041248 578 VKVLKL-PFGMSKLGSLQLLDISHAGIRE-LPEE--LKLLVNLKCLNLRWTRMLNKI-PRLLISNSSWLRVLRMFAIGFE 652 (813)
Q Consensus 578 ~~~~~l-p~~i~~L~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~ 652 (813)
.+..+ |..++++++|++|++++|.++. .|.. +..+++|++|++++|. +..+ |...++++++|++|++++|.+.
T Consensus 90 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 -QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp -TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred -ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCccc
Confidence 77766 7889999999999999999985 4555 8999999999999995 5555 6554789999999999999887
Q ss_pred CCCC
Q 041248 653 NSEE 656 (813)
Q Consensus 653 ~~~~ 656 (813)
+...
T Consensus 168 ~~~~ 171 (455)
T 3v47_A 168 SICE 171 (455)
T ss_dssp CCCT
T ss_pred ccCh
Confidence 7643
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=2.1e-18 Score=193.15 Aligned_cols=140 Identities=18% Similarity=0.295 Sum_probs=83.6
Q ss_pred cCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc
Q 041248 504 SGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL 583 (813)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l 583 (813)
.+..+..++.....+.++.|++++|.+..++.+..+++|+.|+++ ++.+..+++ +..+++|++|++++| .++.+
T Consensus 54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~L~~n---~l~~~ 127 (466)
T 1o6v_A 54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITP--LANLTNLTGLTLFNN---QITDI 127 (466)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS---CCCCC
T ss_pred CCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECC-CCccccChh--hcCCCCCCEEECCCC---CCCCC
Confidence 333444555555666777777777777766656677777777777 444555554 666777777777777 66666
Q ss_pred CccccCCCCCCEEeecCCCCcccch--------------------hhcCCCCCcEEeccCcccccccchhhhcCCCCCce
Q 041248 584 PFGMSKLGSLQLLDISHAGIRELPE--------------------ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRV 643 (813)
Q Consensus 584 p~~i~~L~~L~~L~l~~~~i~~lp~--------------------~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 643 (813)
|. +.++++|++|++++|.+..+|. .+.++++|++|++++| .+..++. +..+++|++
T Consensus 128 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~ 203 (466)
T 1o6v_A 128 DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAKLTNLES 203 (466)
T ss_dssp GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSE
T ss_pred hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hccCCCCCE
Confidence 53 6666777777776666655542 1344455555555555 2344433 455555555
Q ss_pred eeccccccCC
Q 041248 644 LRMFAIGFEN 653 (813)
Q Consensus 644 L~l~~~~~~~ 653 (813)
|++++|.+.+
T Consensus 204 L~l~~n~l~~ 213 (466)
T 1o6v_A 204 LIATNNQISD 213 (466)
T ss_dssp EECCSSCCCC
T ss_pred EEecCCcccc
Confidence 5555554443
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=196.84 Aligned_cols=119 Identities=23% Similarity=0.295 Sum_probs=97.5
Q ss_pred EEEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCc
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGH 577 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 577 (813)
.+...+..+..+|.... +++++|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|++++|
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N-- 79 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHN-- 79 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSS--
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecC-CCccCCcChHHhhcccCCCEEecCCC--
Confidence 44455556666765333 78999999999998874 47889999999999 55677776666999999999999999
Q ss_pred ccccccCccccCCCCCCEEeecCCCCcc--cchhhcCCCCCcEEeccCcc
Q 041248 578 VKVLKLPFGMSKLGSLQLLDISHAGIRE--LPEELKLLVNLKCLNLRWTR 625 (813)
Q Consensus 578 ~~~~~lp~~i~~L~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~ 625 (813)
.++.+|.. .+++|++|++++|.++. +|..++++++|++|++++|.
T Consensus 80 -~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 80 -KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp -CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred -ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 88888866 88999999999999886 57889999999999998874
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=4.1e-19 Score=189.61 Aligned_cols=243 Identities=21% Similarity=0.212 Sum_probs=114.6
Q ss_pred eeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEee
Q 041248 520 VRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDI 598 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l 598 (813)
++.+++.++.+..+|.. -.++|++|+++ ++.+..+++..|..+++|++|++++| .++.+ |..++++++|++|++
T Consensus 35 l~~l~~~~~~l~~ip~~-~~~~l~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKE-ISPDTTLLDLQ-NNDISELRKDDFKGLQHLYALVLVNN---KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS---CCCEECGGGSTTCTTCCEEEC
T ss_pred CCEEECCCCCccccCCC-CCCCCeEEECC-CCcCCccCHhHhhCCCCCcEEECCCC---ccCccCHhHhhCcCCCCEEEC
Confidence 44445544444444321 12445555555 33344444433555555555555555 44443 344555555555555
Q ss_pred cCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcC-
Q 041248 599 SHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGL- 677 (813)
Q Consensus 599 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L- 677 (813)
++|.++.+|..+. ++|++|++++| .+..+|...++.+++|++|++++|.+..... ....+..+
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~~~l~ 173 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-------------EPGAFDGLK 173 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-------------CTTSSCSCC
T ss_pred CCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCC-------------CcccccCCc
Confidence 5555555554433 45555555555 3344444334555555555555444321000 00111111
Q ss_pred -------------------CCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecc
Q 041248 678 -------------------RYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRS 738 (813)
Q Consensus 678 -------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~ 738 (813)
++|+.|+++.|....... .....+++|+.|+++++ .+..+....+..+++|+.|++++
T Consensus 174 L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp CSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCS
T ss_pred cCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCC
Confidence 355555665554433221 11122345666666653 33333333455666666666665
Q ss_pred cCccceeeecccccCCCCCCcccccCcceEeeccCcCCCcccc--hh------cCCCCceEeeecCch
Q 041248 739 AVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTF--LV------CAPSLKSLSLYGCNA 798 (813)
Q Consensus 739 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~------~l~~L~~L~l~~c~~ 798 (813)
+ .+..+ + .....+++|+.|++++|+ ++.++. +. ..++|+.|++++++.
T Consensus 251 N-~l~~l-p---------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 251 N-KLSRV-P---------AGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp S-CCCBC-C---------TTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred C-cCeec-C---------hhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcc
Confidence 3 33322 1 112366777777777754 555542 11 145677777777664
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.1e-18 Score=185.35 Aligned_cols=217 Identities=23% Similarity=0.272 Sum_probs=174.9
Q ss_pred CCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCc
Q 041248 563 CMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLR 642 (813)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 642 (813)
...++++|++++| .++.+|..++++++|++|++++|.++.+|..++++++|++|++++| .+..+|.. ++++++|+
T Consensus 79 ~~~~l~~L~L~~n---~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSV---PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESS---CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCC
T ss_pred cccceeEEEccCC---CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCC
Confidence 4578999999999 8999999999999999999999999999999999999999999999 56799987 99999999
Q ss_pred eeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccc
Q 041248 643 VLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHA 722 (813)
Q Consensus 643 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~ 722 (813)
+|++++|...+..+..+ . .......+.++++|+.|+++.|.+..++. ....+++|+.|++++|. +..++.
T Consensus 154 ~L~L~~n~~~~~~p~~~----~--~~~~~~~~~~l~~L~~L~L~~n~l~~lp~---~l~~l~~L~~L~L~~N~-l~~l~~ 223 (328)
T 4fcg_A 154 ELSIRACPELTELPEPL----A--STDASGEHQGLVNLQSLRLEWTGIRSLPA---SIANLQNLKSLKIRNSP-LSALGP 223 (328)
T ss_dssp EEEEEEETTCCCCCSCS----E--EEC-CCCEEESTTCCEEEEEEECCCCCCG---GGGGCTTCCEEEEESSC-CCCCCG
T ss_pred EEECCCCCCccccChhH----h--hccchhhhccCCCCCEEECcCCCcCcchH---hhcCCCCCCEEEccCCC-CCcCch
Confidence 99999876554321111 0 01122346779999999999998775443 23445699999999964 444543
Q ss_pred cccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCchhhh
Q 041248 723 TAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNAMEE 801 (813)
Q Consensus 723 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~ 801 (813)
.+..+++|+.|++++|.....+ +..+ ..+++|+.|+|++|.....+| .++.+++|+.|+|++|+.+..
T Consensus 224 -~l~~l~~L~~L~Ls~n~~~~~~-p~~~---------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 224 -AIHHLPKLEELDLRGCTALRNY-PPIF---------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp -GGGGCTTCCEEECTTCTTCCBC-CCCT---------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred -hhccCCCCCEEECcCCcchhhh-HHHh---------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 5888999999999997766543 3332 478999999999999999999 688999999999999998887
Q ss_pred hhcc
Q 041248 802 IISV 805 (813)
Q Consensus 802 i~~~ 805 (813)
+...
T Consensus 293 iP~~ 296 (328)
T 4fcg_A 293 LPSL 296 (328)
T ss_dssp CCGG
T ss_pred ccHH
Confidence 7643
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=2.5e-18 Score=191.00 Aligned_cols=239 Identities=23% Similarity=0.300 Sum_probs=166.7
Q ss_pred EEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHV 578 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (813)
+.+.+..+..+|.. -.+.++.|++++|.+..++ .+..+++|++|+++ ++.+..++...|.++++|++|+|++|
T Consensus 48 v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n--- 122 (440)
T 3zyj_A 48 VICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS-RNHIRTIEIGAFNGLANLNTLELFDN--- 122 (440)
T ss_dssp EECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECC-SSCCCEECGGGGTTCSSCCEEECCSS---
T ss_pred EEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECC-CCcCCccChhhccCCccCCEEECCCC---
Confidence 44455556666652 2357888888888887764 46788888888888 55677777777888888888888888
Q ss_pred cccccCc-cccCCCCCCEEeecCCCCcccch-hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCC
Q 041248 579 KVLKLPF-GMSKLGSLQLLDISHAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEE 656 (813)
Q Consensus 579 ~~~~lp~-~i~~L~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 656 (813)
.++.+|. .+..+++|++|+|++|.++.+|. .+.++++|++|++++|..+..+|.+.+.++++|++|++++|++..++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP- 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence 7777765 57888888888888888888776 47788888888888877778888766888888888888887766543
Q ss_pred CCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeee
Q 041248 657 PSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCI 736 (813)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l 736 (813)
.+..+++|+.|+++.|.+..+.. .....+++|+.|+++++ .++.+....+..+++|+.|+|
T Consensus 202 ----------------~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 202 ----------------NLTPLIKLDELDLSGNHLSAIRP--GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp ----------------CCTTCSSCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEEC
T ss_pred ----------------ccCCCcccCEEECCCCccCccCh--hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEEC
Confidence 25667778888877666543321 12223446777777764 344444445666777777777
Q ss_pred cccCccceeeecccccCCCCCCcccccCcceEeeccCc
Q 041248 737 RSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCH 774 (813)
Q Consensus 737 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 774 (813)
++ +.++.+....+. .+++|+.|+|++++
T Consensus 263 ~~-N~l~~~~~~~~~---------~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 263 AH-NNLTLLPHDLFT---------PLHHLERIHLHHNP 290 (440)
T ss_dssp TT-SCCCCCCTTTTS---------SCTTCCEEECCSSC
T ss_pred CC-CCCCccChhHhc---------cccCCCEEEcCCCC
Confidence 76 344443333222 56777777777654
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=8.5e-19 Score=202.55 Aligned_cols=133 Identities=16% Similarity=0.207 Sum_probs=93.1
Q ss_pred ccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCc-cccCCCCC
Q 041248 517 WENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPF-GMSKLGSL 593 (813)
Q Consensus 517 ~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~-~i~~L~~L 593 (813)
...++.+++.++.+..+|. +..+++|++|+++ ++.+..+++..|..+++|++|+|++| .+..+|+ .++++++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFN---AIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS---CCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC-CCCCCCCChHHhcCCCCCCEEECCCC---cCCCCCHHHHcCCCCC
Confidence 3466777777777776654 4567777777777 44566666655777777777777777 6666653 45777777
Q ss_pred CEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCC
Q 041248 594 QLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 594 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
++|+|++|.++.+|.. ++++++|++|++++| .+..+|+..++.+++|++|++++|.+.++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 7777777777777766 477777777777777 35555554477777777777777766654
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=3.7e-18 Score=196.06 Aligned_cols=120 Identities=24% Similarity=0.299 Sum_probs=102.1
Q ss_pred eEEEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCC
Q 041248 499 KFLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCG 576 (813)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 576 (813)
..+.+.+..+..+|... .+.++.|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLS-HNRIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECC-SCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECC-CCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence 34555666777777533 378999999999998875 57899999999999 56788887777999999999999999
Q ss_pred cccccccCccccCCCCCCEEeecCCCCcccc--hhhcCCCCCcEEeccCcc
Q 041248 577 HVKVLKLPFGMSKLGSLQLLDISHAGIRELP--EELKLLVNLKCLNLRWTR 625 (813)
Q Consensus 577 ~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~ 625 (813)
.++.+|.. .+++|++|++++|.++.+| ..++++++|++|++++|.
T Consensus 111 --~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 111 --RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp --CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred --cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 88899876 8999999999999998765 789999999999999884
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=2.5e-18 Score=191.75 Aligned_cols=239 Identities=24% Similarity=0.289 Sum_probs=161.2
Q ss_pred EEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHV 578 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (813)
+.+.+..+..+|.. -.+.++.|++++|.+..++ .+..+++|+.|+++ ++.+..++...|.++++|++|+|++|
T Consensus 59 v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n--- 133 (452)
T 3zyi_A 59 VVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG-RNSIRQIEVGAFNGLASLNTLELFDN--- 133 (452)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS---
T ss_pred EEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECC-CCccCCcChhhccCcccCCEEECCCC---
Confidence 44445555556642 2357888888888887763 36788888888888 55677777667888888888888888
Q ss_pred cccccCcc-ccCCCCCCEEeecCCCCcccch-hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCC
Q 041248 579 KVLKLPFG-MSKLGSLQLLDISHAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEE 656 (813)
Q Consensus 579 ~~~~lp~~-i~~L~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 656 (813)
.++.+|.. +.++++|++|+|++|.++.+|. .+.++++|++|++++|..+..+|.+.+..+++|++|++++|++..++
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 77777644 7778888888888888888776 47788888888888877778888766888888888888887766542
Q ss_pred CCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeee
Q 041248 657 PSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCI 736 (813)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l 736 (813)
.+..+++|+.|+++.|.+..+.. .....+++|+.|+++++ .+..+....+..+++|+.|+|
T Consensus 213 ----------------~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 213 ----------------NLTPLVGLEELEMSGNHFPEIRP--GSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp ----------------CCTTCTTCCEEECTTSCCSEECG--GGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred ----------------cccccccccEEECcCCcCcccCc--ccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEEC
Confidence 25567777777777666543321 11222346667777664 333443344666667777777
Q ss_pred cccCccceeeecccccCCCCCCcccccCcceEeeccCc
Q 041248 737 RSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCH 774 (813)
Q Consensus 737 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 774 (813)
+++ .++.+....+ ..+++|+.|+|++++
T Consensus 274 ~~N-~l~~~~~~~~---------~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 274 AHN-NLSSLPHDLF---------TPLRYLVELHLHHNP 301 (452)
T ss_dssp CSS-CCSCCCTTSS---------TTCTTCCEEECCSSC
T ss_pred CCC-cCCccChHHh---------ccccCCCEEEccCCC
Confidence 653 4443322222 256667777776654
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=5.3e-19 Score=186.43 Aligned_cols=215 Identities=23% Similarity=0.244 Sum_probs=124.4
Q ss_pred EEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeecccccccc--chhhcCCCcccEEEeccCCc
Q 041248 502 VCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMIT--DGFFQCMPSLKVLKMSNCGH 577 (813)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~ 577 (813)
.+.+..+..+|.. -.+.+++|++++|.+..++. +..+++|++|+++ ++.+..+. ...+..+++|++|++++|
T Consensus 13 ~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-- 88 (306)
T 2z66_A 13 RCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-SNGLSFKGCCSQSDFGTTSLKYLDLSFN-- 88 (306)
T ss_dssp ECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCEEEEEEHHHHSCSCCCEEECCSC--
T ss_pred EcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECC-CCccCcccCcccccccccccCEEECCCC--
Confidence 3344445555542 23467777777777766654 4667777777777 34444331 122455777777777777
Q ss_pred ccccccCccccCCCCCCEEeecCCCCcccch--hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCC
Q 041248 578 VKVLKLPFGMSKLGSLQLLDISHAGIRELPE--ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 578 ~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
.+..+|..+..+++|++|++++|.++.+|. .+..+++|++|++++|. +...+...++.+++|++|++++|.+.+.
T Consensus 89 -~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 165 (306)
T 2z66_A 89 -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQEN- 165 (306)
T ss_dssp -SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGG-
T ss_pred -ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccc-
Confidence 666777667777777777777777776654 56677777777777773 3444333466777777777776654420
Q ss_pred CCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceee
Q 041248 656 EPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELC 735 (813)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~ 735 (813)
.....+..+++|+.|+++.|....... .....+++|+.|+++++ .+..++...+..+++|+.|+
T Consensus 166 -------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 166 -------------FLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp -------------EECSCCTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEE
T ss_pred -------------cchhHHhhCcCCCEEECCCCCcCCcCH--HHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeE
Confidence 011235566667777766655443211 11122345666666664 23333322355566666666
Q ss_pred eccc
Q 041248 736 IRSA 739 (813)
Q Consensus 736 l~~~ 739 (813)
++++
T Consensus 230 L~~N 233 (306)
T 2z66_A 230 YSLN 233 (306)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 6653
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=2.1e-18 Score=200.28 Aligned_cols=149 Identities=22% Similarity=0.245 Sum_probs=127.6
Q ss_pred EEEEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCc
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGH 577 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 577 (813)
.+.+.+.++..+|.. -.+.++.|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|++++|
T Consensus 15 ~~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~~L~Ls~n-- 90 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGN-- 90 (606)
T ss_dssp EEECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC--
T ss_pred ceEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCC-CCcccccCHHHhhchhhcCEeECCCC--
Confidence 345556667777763 33789999999999988754 7899999999999 55788887777999999999999999
Q ss_pred cccccc-CccccCCCCCCEEeecCCCCcccc-hhhcCCCCCcEEeccCccccc--ccchhhhcCCCCCceeeccccccCC
Q 041248 578 VKVLKL-PFGMSKLGSLQLLDISHAGIRELP-EELKLLVNLKCLNLRWTRMLN--KIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 578 ~~~~~l-p~~i~~L~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
.++.+ |..++++++|++|++++|.++.+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+.+
T Consensus 91 -~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 -PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp -CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred -cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCccee
Confidence 88877 788999999999999999999887 679999999999999995 54 47886 9999999999999998876
Q ss_pred CC
Q 041248 654 SE 655 (813)
Q Consensus 654 ~~ 655 (813)
.+
T Consensus 168 ~~ 169 (606)
T 3vq2_A 168 IT 169 (606)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=192.14 Aligned_cols=265 Identities=19% Similarity=0.203 Sum_probs=181.1
Q ss_pred ccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCC
Q 041248 514 VEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKL 590 (813)
Q Consensus 514 ~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L 590 (813)
....++++.|++++|.+..+. .+..+++|++|+++ ++.+..+|...|.++++|++|+|++| .+..+ |..+.++
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n---~i~~~~~~~~~~l 127 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR-SNRLKLIPLGVFTGLSNLTKLDISEN---KIVILLDYMFQDL 127 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCSCCTTSSTTCTTCCEEECTTS---CCCEECTTTTTTC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC-CCcCCccCcccccCCCCCCEEECCCC---ccccCChhHcccc
Confidence 455678999999999888762 47889999999999 56788888888899999999999999 77765 5678899
Q ss_pred CCCCEEeecCCCCcccc-hhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccc-------c
Q 041248 591 GSLQLLDISHAGIRELP-EELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDS-------V 662 (813)
Q Consensus 591 ~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~-------~ 662 (813)
++|++|++++|.+..++ ..+..+++|++|++++| .+..+|...+..+++|+.|++..|.+..++...+.. .
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 99999999999888764 46889999999999999 577888766899999999999988776543211000 0
Q ss_pred cc--CCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccC
Q 041248 663 LI--GGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAV 740 (813)
Q Consensus 663 ~~--~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 740 (813)
+. .........+....+|+.|+++.|.+..++.. ....+++|+.|+++++ .+..+....+..+++|+.|++++ +
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n 282 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL--AVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVG-G 282 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH--HHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCS-S
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccCHH--HhcCccccCeeECCCC-cCCccChhhccccccCCEEECCC-C
Confidence 00 00000111112223555555555554433211 1122346667777664 34444434466667777777766 3
Q ss_pred ccceeeecccccCCCCCCcccccCcceEeeccCcCCCccc--chhcCCCCceEeeecCc
Q 041248 741 ELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT--FLVCAPSLKSLSLYGCN 797 (813)
Q Consensus 741 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 797 (813)
.+..+.+..+ ..+++|+.|+|++| .++.++ .+..+++|+.|++++++
T Consensus 283 ~l~~~~~~~~---------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 283 QLAVVEPYAF---------RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSEECTTTB---------TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ccceECHHHh---------cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 4444333333 37888999999987 466766 35678899999988765
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=1e-18 Score=206.65 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=79.5
Q ss_pred cCccceeEEecccccccc------------------ccc-CC--CCCceeEEEeeeccccccccchhhcCCCcccEEEec
Q 041248 515 EGWENVRRLSLMQNQIEI------------------LSE-VP--TCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMS 573 (813)
Q Consensus 515 ~~~~~~~~l~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 573 (813)
...++++.|++++|.+.. +|. +. .+++|+.|++++|.....+|.. |.++++|++|+|+
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIA 523 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECc
Confidence 344567777777776665 443 23 5677777777755444455543 6667777777777
Q ss_pred cCCccc-cc--ccCccccCCC-------CCCEEeecCCCCcccch--hhcCCCCCcEEeccCcccccccchhhhcCCCCC
Q 041248 574 NCGHVK-VL--KLPFGMSKLG-------SLQLLDISHAGIRELPE--ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWL 641 (813)
Q Consensus 574 ~~~~~~-~~--~lp~~i~~L~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L 641 (813)
+| . ++ .+|..++++. +|++|++++|.+..+|. .++++++|++|++++|. +..+| . ++++++|
T Consensus 524 ~N---~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L 597 (876)
T 4ecn_A 524 CN---RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKL 597 (876)
T ss_dssp TC---TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEE
T ss_pred CC---CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCcc
Confidence 66 4 44 2555444443 66666666666666666 56666666666666663 44555 2 5666666
Q ss_pred ceeeccccccCCC
Q 041248 642 RVLRMFAIGFENS 654 (813)
Q Consensus 642 ~~L~l~~~~~~~~ 654 (813)
++|++++|.+..+
T Consensus 598 ~~L~Ls~N~l~~l 610 (876)
T 4ecn_A 598 TDLKLDYNQIEEI 610 (876)
T ss_dssp SEEECCSSCCSCC
T ss_pred eEEECcCCccccc
Confidence 6666666555543
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=4.6e-18 Score=190.42 Aligned_cols=261 Identities=21% Similarity=0.216 Sum_probs=184.1
Q ss_pred CccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCE
Q 041248 516 GWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQL 595 (813)
Q Consensus 516 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~ 595 (813)
..+.++.|++.++.+..++.+..+++|++|+++ ++.+..+++ +..+++|++|++++| .+..++. ++++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~l~~n---~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNN---QIADITP-LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS---CCCCCGG-GTTCTTCCE
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECC-CCccCCchh--hhccccCCEEECCCC---ccccChh-hcCCCCCCE
Confidence 346899999999999999888899999999999 556778876 899999999999999 8888876 999999999
Q ss_pred EeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCC-C---Ccc-ccccCCccch
Q 041248 596 LDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEE-P---SED-SVLIGGGEVL 670 (813)
Q Consensus 596 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~-~---~~~-~~~~~~~~~~ 670 (813)
|++++|.++.+|. +.++++|++|++++| .+..+|. ++.+++|++|++. +....... . .+. ..+.......
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecC-CcccCchhhccCCCCCEEECcCCcCCC
Confidence 9999999999986 999999999999999 4677775 7888888888875 33222211 0 000 0011111122
Q ss_pred hHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccC----------
Q 041248 671 VHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAV---------- 740 (813)
Q Consensus 671 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~---------- 740 (813)
+..+..+++|+.|+++.|....... ...+++|+.|++++|. +..++ .+..+++|+.|+++++.
T Consensus 192 ~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~l 264 (466)
T 1o6v_A 192 ISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LKDIG--TLASLTNLTDLDLANNQISNLAPLSGL 264 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCSSCCCCCGGGTTC
T ss_pred ChhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cccch--hhhcCCCCCEEECCCCccccchhhhcC
Confidence 3446677777777777666544332 2234577788877753 33333 46667778888777642
Q ss_pred -ccceeeecccccCCCCCCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecCc
Q 041248 741 -ELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCN 797 (813)
Q Consensus 741 -~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~ 797 (813)
.++.+.+......+.++ ...+++|+.|++++|. +..++.+..+++|+.|++++|.
T Consensus 265 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSC
T ss_pred CCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCc
Confidence 23333333332222222 4567888888888864 6677777888889999888874
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=5.8e-18 Score=188.11 Aligned_cols=271 Identities=15% Similarity=0.134 Sum_probs=167.1
Q ss_pred EcCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccc
Q 041248 503 CSGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLK 582 (813)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 582 (813)
..+..+..+|.....+.++.|++++|.+..++ +..+++|++|+++ ++.+..++ +..+++|++|++++| .++.
T Consensus 49 Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls-~N~l~~~~---~~~l~~L~~L~L~~N---~l~~ 120 (457)
T 3bz5_A 49 CHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACD-SNKLTNLD---VTPLTKLTYLNCDTN---KLTK 120 (457)
T ss_dssp CCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC-SSCCSCCC---CTTCTTCCEEECCSS---CCSC
T ss_pred ccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECc-CCCCceee---cCCCCcCCEEECCCC---cCCe
Confidence 33444555566666778888888888888775 7788888888888 45566664 677888888888888 7777
Q ss_pred cCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccc-
Q 041248 583 LPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDS- 661 (813)
Q Consensus 583 lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~- 661 (813)
+| ++.+++|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+++|++|++++|.+.+++....+.
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l~~l~~L 193 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDVSQNKLL 193 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCCTTCTTC
T ss_pred ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceeccccCCCC
Confidence 75 788888888888888888875 7788888888888886666662 678888888888888777654211110
Q ss_pred ---cccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecc
Q 041248 662 ---VLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRS 738 (813)
Q Consensus 662 ---~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~ 738 (813)
.+.......+ .+..+++|+.|+++.|....++ ...+++|+.|+++++ .++.++ +..+++|+.|.+++
T Consensus 194 ~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~L~~L~l~~N-~l~~~~---~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 194 NRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVN-PLTELD---VSTLSKLTTLHCIQ 263 (457)
T ss_dssp CEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECTT
T ss_pred CEEECcCCcCCee-ccccCCCCCEEECcCCcccccC-----ccccCCCCEEEeeCC-cCCCcC---HHHCCCCCEEeccC
Confidence 0000011111 2555666666666666655432 122346666666664 333333 22334444444433
Q ss_pred cCccceeeecccccCCCCCCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecCchhhhh
Q 041248 739 AVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCNAMEEI 802 (813)
Q Consensus 739 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i 802 (813)
+.++.+.+......+..+ ...+++|+.|++++|+.++.+|. ..++|+.|++++|++++.+
T Consensus 264 -n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 264 -TDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC--QAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp -CCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCTTCTTCCEE
T ss_pred -CCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc--CCCcceEechhhcccCCEE
Confidence 233333222221111111 13678888888888887777763 3455555555555555444
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=1.9e-17 Score=199.06 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=128.2
Q ss_pred ceEEEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccC
Q 041248 498 RKFLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNC 575 (813)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 575 (813)
...+.+....+..+|. -.++++.|++++|.+..+. .+..+++|++|++++|.....+++..|.++++|++|+|++|
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 3566677778888887 6679999999999998863 47899999999999776777887777999999999999999
Q ss_pred Cccccccc-CccccCCCCCCEEeecCCCCcc-cchh--hcCCCCCcEEeccCccccccc-chhhhcCCCCCceeeccccc
Q 041248 576 GHVKVLKL-PFGMSKLGSLQLLDISHAGIRE-LPEE--LKLLVNLKCLNLRWTRMLNKI-PRLLISNSSWLRVLRMFAIG 650 (813)
Q Consensus 576 ~~~~~~~l-p~~i~~L~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~ 650 (813)
.+..+ |..++++++|++|+|++|.+.. +|.. +.++++|++|++++|. +..+ |...++++++|++|++++|.
T Consensus 84 ---~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 84 ---KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp ---CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred ---cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 78776 8899999999999999999885 5665 8999999999999995 4554 32348999999999999988
Q ss_pred cCCCC
Q 041248 651 FENSE 655 (813)
Q Consensus 651 ~~~~~ 655 (813)
+....
T Consensus 160 i~~~~ 164 (844)
T 3j0a_A 160 IFLVC 164 (844)
T ss_dssp CCCCC
T ss_pred CCeeC
Confidence 76653
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=7.3e-18 Score=195.75 Aligned_cols=258 Identities=20% Similarity=0.180 Sum_probs=181.6
Q ss_pred cCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc
Q 041248 504 SGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL 583 (813)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l 583 (813)
.+..+..++.....+.++.|++.+|.+..+|.+ .+++|+.|+++++..+..+ .+..+++|++|++++| .++.+
T Consensus 293 ~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n---~l~~~ 365 (606)
T 3vq2_A 293 AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRN---ALSFS 365 (606)
T ss_dssp ESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSS---CEEEE
T ss_pred cCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch---hhccCCCCCEEECcCC---ccCCC
Confidence 344444555555566777777777777767766 7777888877755344333 2567778888888887 66554
Q ss_pred ---CccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccch-hhhcCCCCCceeeccccccCCCCCCCc
Q 041248 584 ---PFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGFENSEEPSE 659 (813)
Q Consensus 584 ---p~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~ 659 (813)
|..+..+++|++|++++|.+..+|..+..+++|++|++++|. +...+. ..+..+++|++|++++|.+....
T Consensus 366 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---- 440 (606)
T 3vq2_A 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDF---- 440 (606)
T ss_dssp EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEECC----
T ss_pred cchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCccc----
Confidence 667777888888888888888888778888888888888874 344432 34778888888888877655432
Q ss_pred cccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeeccc
Q 041248 660 DSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSA 739 (813)
Q Consensus 660 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~ 739 (813)
...+..+++|+.|+++.|..... ........+++|+.|++++| .+..+....+..+++|+.|+++++
T Consensus 441 -----------~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 441 -----------DGIFLGLTSLNTLKMAGNSFKDN-TLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp -----------TTTTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred -----------hhhhcCCCCCCEEECCCCcCCCc-chHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC
Confidence 24577889999999987766431 01222334568999999986 444444446888999999999985
Q ss_pred CccceeeecccccCCCCCCcccccCcceEeeccCcCCCccc-chhcCC-CCceEeeecCc
Q 041248 740 VELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT-FLVCAP-SLKSLSLYGCN 797 (813)
Q Consensus 740 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~-~L~~L~l~~c~ 797 (813)
.+..+.+..+. .+++|+.|++++|. ++.+| .+..++ +|+.|++++++
T Consensus 508 -~l~~~~~~~~~---------~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 508 -NLLFLDSSHYN---------QLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp -CCSCEEGGGTT---------TCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred -cCCCcCHHHcc---------CCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 55555455544 78999999999986 77888 467787 59999998855
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=2.4e-17 Score=175.91 Aligned_cols=280 Identities=19% Similarity=0.215 Sum_probs=199.9
Q ss_pred EEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHV 578 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (813)
+.+.+..+..+|... .+.++.|++++|.+..++ .+..+++|++|+++ ++.+..+++..|..+++|++|++++|
T Consensus 38 l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n--- 112 (332)
T 2ft3_A 38 VQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISKN--- 112 (332)
T ss_dssp EECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGSTTCTTCCEEECCSS---
T ss_pred EECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECC-CCccCccCHhHhhCcCCCCEEECCCC---
Confidence 334444555566432 468999999999998874 47899999999999 55688887677999999999999999
Q ss_pred cccccCccccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccc--cchhhhcCCCCCceeeccccccCCCC
Q 041248 579 KVLKLPFGMSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNK--IPRLLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 579 ~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
.++.+|..+. ++|++|++++|.++.+|.. +..+++|++|++++|. +.. .+...+..+ +|++|++++|.+..++
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 8889998776 8999999999999999865 8899999999999994 432 333337777 9999999998887765
Q ss_pred CCC---cc-cccc--CCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCccccccccccccc
Q 041248 656 EPS---ED-SVLI--GGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLK 729 (813)
Q Consensus 656 ~~~---~~-~~~~--~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~ 729 (813)
..- +. ..+. .........+..+++|+.|+++.|....... .....+++|+.|+++++ .+..++. .+..++
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N-~l~~lp~-~l~~l~ 264 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN--GSLSFLPTLRELHLDNN-KLSRVPA-GLPDLK 264 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT--TGGGGCTTCCEEECCSS-CCCBCCT-TGGGCT
T ss_pred ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh--hHhhCCCCCCEEECCCC-cCeecCh-hhhcCc
Confidence 411 11 0111 1112233567889999999999887755432 11233568999999986 5556653 488899
Q ss_pred ccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCC--Cccc-chhcCCCCceEeeecCc
Q 041248 730 HLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKL--KDLT-FLVCAPSLKSLSLYGCN 797 (813)
Q Consensus 730 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l--~~l~-~l~~l~~L~~L~l~~c~ 797 (813)
+|+.|++++ +.++.+....+.. .. ....+++|+.|++.+++.. ...| .+..+++|+.|+++++.
T Consensus 265 ~L~~L~l~~-N~l~~~~~~~~~~--~~-~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHT-NNITKVGVNDFCP--VG-FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCS-SCCCBCCTTSSSC--SS-CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCC-CCCCccChhHccc--cc-cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999998 4566544333321 00 0123678999999998743 2233 46789999999999875
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=9.2e-18 Score=187.63 Aligned_cols=265 Identities=18% Similarity=0.218 Sum_probs=163.3
Q ss_pred ccCccceeEEeccccccc-ccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccc-cCcc--c
Q 041248 514 VEGWENVRRLSLMQNQIE-ILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLK-LPFG--M 587 (813)
Q Consensus 514 ~~~~~~~~~l~l~~~~~~-~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-lp~~--i 587 (813)
....++++.|++++|.+. .++ .+..+++|++|+++ ++.+..+++..|.++++|++|++++| .++. .|.. +
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~ 125 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD-YNQFLQLETGAFNGLANLEVLTLTQC---NLDGAVLSGNFF 125 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT-TCTTCEECTTTTTTCTTCCEEECTTS---CCBTHHHHSSTT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCC-CCccCccChhhccCcccCCEEeCCCC---CCCccccCcccc
Confidence 456678999999998875 342 37889999999999 55677776666899999999999999 7764 3433 8
Q ss_pred cCCCCCCEEeecCCCCccc-chh-hcCCCCCcEEeccCcccccccchhhhcCC---------------------------
Q 041248 588 SKLGSLQLLDISHAGIREL-PEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNS--------------------------- 638 (813)
Q Consensus 588 ~~L~~L~~L~l~~~~i~~l-p~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L--------------------------- 638 (813)
+++++|++|++++|.+..+ |.. +.++++|++|++++|. +..++...+..+
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccc
Confidence 8899999999999999877 544 7899999999999984 444433224433
Q ss_pred -------CCCceeeccccccCCCCCC---------------------------------------------Ccc-cccc-
Q 041248 639 -------SWLRVLRMFAIGFENSEEP---------------------------------------------SED-SVLI- 664 (813)
Q Consensus 639 -------~~L~~L~l~~~~~~~~~~~---------------------------------------------~~~-~~~~- 664 (813)
++|++|++++|.+.+..+. .+. ..+.
T Consensus 205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred cccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence 5566666666544210000 000 0000
Q ss_pred -CCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccc
Q 041248 665 -GGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELE 743 (813)
Q Consensus 665 -~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~ 743 (813)
.........+..+++|+.|+++.|....... .....+++|+.|++++| .+..+....+..+++|+.|+++++ .+.
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 360 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDD--NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIR 360 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCC
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccCh--hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-ccc
Confidence 0001112234455555555555444432211 11112345666666654 333333234555666666666653 344
Q ss_pred eeeecccccCCCCCCcccccCcceEeeccCcCCCcccc--hhcCCCCceEeeecCc
Q 041248 744 ELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTF--LVCAPSLKSLSLYGCN 797 (813)
Q Consensus 744 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~ 797 (813)
.+.+..+ ..+++|++|++++|. ++.+|. +..+++|+.|++++++
T Consensus 361 ~~~~~~~---------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 361 ALGDQSF---------LGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECTTTT---------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccChhhc---------cccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 3333332 368889999998864 667763 5778899999987654
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=1.7e-17 Score=181.34 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=101.7
Q ss_pred CCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEeecCCCCcccchh-hcCCC
Q 041248 537 PTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDISHAGIRELPEE-LKLLV 614 (813)
Q Consensus 537 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~ 614 (813)
..++++++|+++ ++.+..+|..+|..+++|++|++++| .++.+| ..+..+++|++|++++|.++.+|.. +..++
T Consensus 42 ~~l~~l~~l~l~-~~~l~~l~~~~~~~l~~L~~L~L~~n---~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDL---QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGGCCCSEEEEE-SCEESEECTHHHHHCCCCSEEECTTS---CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCCceEEEec-CCchhhCChhHhcccccCcEEECCCC---cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 356899999999 66789999998999999999999999 888876 4899999999999999999988654 89999
Q ss_pred CCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCC
Q 041248 615 NLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 615 ~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
+|++|++++| .+..+|.+.++++++|++|++++|.+...+
T Consensus 118 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 118 LLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 9999999999 578999886799999999999999887654
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=2.2e-17 Score=194.36 Aligned_cols=151 Identities=20% Similarity=0.192 Sum_probs=125.1
Q ss_pred eEEEEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCC
Q 041248 499 KFLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCG 576 (813)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 576 (813)
..+.+.+..+..+|... .+++++|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n- 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQHN- 83 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECC-SSCCCCCCTTHHHHCTTCCEEECCSS-
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECC-CCccCccCHHHHhcccCcCEEECCCC-
Confidence 34555566677777533 3689999999999988754 7889999999999 55677887777999999999999999
Q ss_pred cccccccCc-cccCCCCCCEEeecCCCCcccc-hhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCC
Q 041248 577 HVKVLKLPF-GMSKLGSLQLLDISHAGIRELP-EELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 577 ~~~~~~lp~-~i~~L~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
.++.+|. .++++++|++|++++|.+..+| ..++++++|++|++++|. +...+.+.++++++|++|++++|.+.+.
T Consensus 84 --~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 84 --ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp --CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred --ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccccc
Confidence 8888886 5999999999999999999887 469999999999999995 5555544488999999999998877665
Q ss_pred C
Q 041248 655 E 655 (813)
Q Consensus 655 ~ 655 (813)
+
T Consensus 161 ~ 161 (680)
T 1ziw_A 161 K 161 (680)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=2.1e-17 Score=191.91 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=120.6
Q ss_pred EEEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCc
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGH 577 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 577 (813)
.+.+.+.++..+|.. -.+.+++|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|++++|
T Consensus 16 ~~~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n-- 91 (606)
T 3t6q_A 16 TYNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT-RCQIYWIHEDTFQSQHRLDTLVLTAN-- 91 (606)
T ss_dssp EEECTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTC--
T ss_pred eEECCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECC-CCccceeChhhccCccccCeeeCCCC--
Confidence 344555566666653 2357999999999998874 47899999999999 55677777777999999999999999
Q ss_pred cccccc-CccccCCCCCCEEeecCCCCccc-chhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCC
Q 041248 578 VKVLKL-PFGMSKLGSLQLLDISHAGIREL-PEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 578 ~~~~~l-p~~i~~L~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
.+..+ |..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+...
T Consensus 92 -~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 92 -PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp -CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred -cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccccc
Confidence 77766 67899999999999999999987 567999999999999999 46665321255699999999998876653
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=1.9e-17 Score=189.88 Aligned_cols=147 Identities=20% Similarity=0.310 Sum_probs=124.3
Q ss_pred EcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccc
Q 041248 503 CSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKV 580 (813)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 580 (813)
..+..+..+|... .+.++.|++++|.+..++ .+..+++|++|+++ .+.+..+++..|..+++|++|++++| .+
T Consensus 12 ~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n---~l 86 (549)
T 2z81_A 12 GRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK-SSRINTIEGDAFYSLGSLEHLDLSDN---HL 86 (549)
T ss_dssp CTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTS---CC
T ss_pred CCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECC-CCCcCccChhhccccccCCEEECCCC---cc
Confidence 3344566677533 368999999999998863 47899999999999 56788888777999999999999999 88
Q ss_pred cccCcc-ccCCCCCCEEeecCCCCcc--cchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCC
Q 041248 581 LKLPFG-MSKLGSLQLLDISHAGIRE--LPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 581 ~~lp~~-i~~L~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
..+|+. ++++++|++|++++|.++. .|..++++++|++|++++|..+..+|...++++++|++|++++|.+.+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 888765 9999999999999999985 4678999999999999999767888865599999999999999887653
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=7.8e-17 Score=171.74 Aligned_cols=279 Identities=19% Similarity=0.176 Sum_probs=174.9
Q ss_pred EEEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHV 578 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (813)
+.+.+..+..+|.. -.+.++.|++++|.+..++. +..+++|++|+++ ++.+..+++..|..+++|++|++++|
T Consensus 36 l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n--- 110 (330)
T 1xku_A 36 VQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKN--- 110 (330)
T ss_dssp EECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSS---
T ss_pred EEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECC-CCcCCeeCHHHhcCCCCCCEEECCCC---
Confidence 34444455556542 23689999999999988754 7889999999999 56677886666999999999999999
Q ss_pred cccccCccccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEeccCccccc---ccchhhhcCCCCCceeeccccccCCC
Q 041248 579 KVLKLPFGMSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLN---KIPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 579 ~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~---~lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|. +. ..|. .+.++++|++|++++|.+..+
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENG-AFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTT-GGGGCTTCCEEECCSSCCCSC
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChh-hccCCCCcCEEECCCCccccC
Confidence 8889987765 7999999999999988764 8899999999999995 43 3344 489999999999999988776
Q ss_pred CCCC---cc-cccc--CCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccc
Q 041248 655 EEPS---ED-SVLI--GGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDL 728 (813)
Q Consensus 655 ~~~~---~~-~~~~--~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l 728 (813)
+... +. ..+. .........+..+++|+.|+++.|....... .....+++|+.|+++++ .+..++. .+..+
T Consensus 187 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N-~l~~lp~-~l~~l 262 (330)
T 1xku_A 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLANTPHLRELHLNNN-KLVKVPG-GLADH 262 (330)
T ss_dssp CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT--TTGGGSTTCCEEECCSS-CCSSCCT-TTTTC
T ss_pred CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh--hhccCCCCCCEEECCCC-cCccCCh-hhccC
Confidence 5310 00 0000 0111123445566666666666555433221 01122345666666664 3333432 35556
Q ss_pred cccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCC-ccc--chhcCCCCceEeeecC
Q 041248 729 KHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLK-DLT--FLVCAPSLKSLSLYGC 796 (813)
Q Consensus 729 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~--~l~~l~~L~~L~l~~c 796 (813)
++|+.|+++++ .++.+....+.. ......+++|+.|++.+++... .++ .+..+++|+.++++++
T Consensus 263 ~~L~~L~l~~N-~i~~~~~~~f~~---~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 263 KYIQVVYLHNN-NISAIGSNDFCP---PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCEEECCSS-CCCCCCTTSSSC---SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcCEEECCCC-cCCccChhhcCC---cccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 66666666652 344332222210 0000124566666666655211 121 3445666666666654
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=4.6e-18 Score=197.56 Aligned_cols=271 Identities=14% Similarity=0.182 Sum_probs=140.6
Q ss_pred ccceeEEecccccccc-cc-cCCCCCceeEEEeeeccccc--cccchhhcCC------CcccEEEeccCCcccccccCc-
Q 041248 517 WENVRRLSLMQNQIEI-LS-EVPTCPHLLTLFLDFNYKLE--MITDGFFQCM------PSLKVLKMSNCGHVKVLKLPF- 585 (813)
Q Consensus 517 ~~~~~~l~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~l------~~L~~L~l~~~~~~~~~~lp~- 585 (813)
.++++.|++.+|.+.. +| .+..+++|++|++++|..+. .+|.. +..+ ++|++|++++| .++.+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n---~l~~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN---NLKTFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS---CCSSCCCH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCC---cCCccCch
Confidence 4556666666555432 22 24556666666666332133 24443 3333 56666666666 5556665
Q ss_pred -cccCCCCCCEEeecCCCCc-ccchhhcCCCCCcEEeccCcccccccchhhhcCCCC-CceeeccccccCCCCCCC--cc
Q 041248 586 -GMSKLGSLQLLDISHAGIR-ELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSW-LRVLRMFAIGFENSEEPS--ED 660 (813)
Q Consensus 586 -~i~~L~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~--~~ 660 (813)
.++++++|++|++++|.+. .+| .++.+++|++|++++| .+..+|.. ++.+++ |++|++++|.+..++..- ..
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~ 400 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKS 400 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTC
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcc
Confidence 6666666666666666666 666 6666666666666666 34566665 667776 777777777666544210 00
Q ss_pred ---c---ccc--CCccchhHHhh-------cCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCccccccccc
Q 041248 661 ---S---VLI--GGGEVLVHELL-------GLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAF 725 (813)
Q Consensus 661 ---~---~~~--~~~~~~~~~l~-------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l 725 (813)
. .+. ......+..+. .+++|+.|+++.|.+..++... ...+++|+.|+++++. +..++...+
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~l~~L~~L~Ls~N~-l~~i~~~~~ 477 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNM-LTEIPKNSL 477 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH--HHTTCCCSEEECCSSC-CSBCCSSSS
T ss_pred cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHH--HccCCCCCEEECCCCC-CCCcCHHHh
Confidence 0 000 00111112233 4556777777766655333211 1123467777777643 334443222
Q ss_pred cc-------ccccceeeecccCcccee---------------eecccccCCCCCCcccccCcceEeecc------CcCCC
Q 041248 726 SD-------LKHLNELCIRSAVELEEL---------------KVDYTEIAPKRSEPFVFRSLHRVTMER------CHKLK 777 (813)
Q Consensus 726 ~~-------l~~L~~L~l~~~~~l~~l---------------~~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~ 777 (813)
.. +++|+.|+++++. ++.+ .+......+.+.....+++|+.|++++ +....
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred ccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccc
Confidence 22 2277777776532 2222 222222223233344566666666633 33344
Q ss_pred ccc-chhcCCCCceEeeecCch
Q 041248 778 DLT-FLVCAPSLKSLSLYGCNA 798 (813)
Q Consensus 778 ~l~-~l~~l~~L~~L~l~~c~~ 798 (813)
.+| .++.+++|+.|++++|.-
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC
T ss_pred cChHHHhcCCCCCEEECCCCcC
Confidence 455 456667777777766654
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=2.4e-17 Score=194.88 Aligned_cols=274 Identities=15% Similarity=0.132 Sum_probs=180.8
Q ss_pred EEEcCCccCcCCC---ccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCc-ccEEEeccCC
Q 041248 501 LVCSGAGVGAVPD---VEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPS-LKVLKMSNCG 576 (813)
Q Consensus 501 ~~~~~~~~~~~~~---~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~ 576 (813)
+...+..+..+|. ....++++.|++++|.+..+|.+..+++|+.|+++ ++.+..+|.. +..+++ |++|+|++|
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls-~N~l~~lp~~-l~~l~~~L~~L~Ls~N- 629 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLD-YNQIEEIPED-FCAFTDQVEGLGFSHN- 629 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECC-SSCCSCCCTT-SCEECTTCCEEECCSS-
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECc-CCccccchHH-HhhccccCCEEECcCC-
Confidence 3334444555665 45667788888888877777777777888888887 4456677765 666777 888888888
Q ss_pred cccccccCccccCCCC--CCEEeecCCCCcccch----hhc--CCCCCcEEeccCcccccccchhhhcCCCCCceeeccc
Q 041248 577 HVKVLKLPFGMSKLGS--LQLLDISHAGIRELPE----ELK--LLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFA 648 (813)
Q Consensus 577 ~~~~~~lp~~i~~L~~--L~~L~l~~~~i~~lp~----~~~--~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 648 (813)
.++.+|..++.+.. |++|++++|.+...++ .+. .+++|++|++++| .+..+|...+..+++|++|++++
T Consensus 630 --~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 630 --KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp --CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCS
T ss_pred --CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCC
Confidence 67777777766544 8888888887754322 222 3457888888888 46778887556888888888888
Q ss_pred cccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccc
Q 041248 649 IGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDL 728 (813)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l 728 (813)
|.+..++.... ......+.++++|+.|+++.|.+..++..... ..+++|+.|+|++| .+..++. .+..+
T Consensus 707 N~L~~ip~~~~--------~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~-~~l~~L~~L~Ls~N-~L~~lp~-~l~~L 775 (876)
T 4ecn_A 707 NLMTSIPENSL--------KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA-TTLPYLSNMDVSYN-CFSSFPT-QPLNS 775 (876)
T ss_dssp CCCSCCCTTSS--------SCTTSCCTTGGGCCEEECCSSCCCCCCGGGST-TTCTTCCEEECCSS-CCSSCCC-GGGGC
T ss_pred CcCCccChHHh--------ccccccccccCCccEEECCCCCCccchHHhhh-ccCCCcCEEEeCCC-CCCccch-hhhcC
Confidence 87776542100 00011234556888999988877654433220 13458899999885 3444543 57788
Q ss_pred cccceeeecccCccceeeecccccCC-CCCCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecCch
Q 041248 729 KHLNELCIRSAVELEELKVDYTEIAP-KRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCNA 798 (813)
Q Consensus 729 ~~L~~L~l~~~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~ 798 (813)
++|+.|+|+++..+.. ....+ .+.....+++|+.|+|++|. +..+|.. ..++|+.|+|++|+-
T Consensus 776 ~~L~~L~Ls~N~~ls~-----N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 776 SQLKAFGIRHQRDAEG-----NRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp TTCCEEECCCCBCTTC-----CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCTT
T ss_pred CCCCEEECCCCCCccc-----ccccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCCC
Confidence 8999999976431110 01111 12233578999999999986 4888843 247999999999874
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=1.2e-17 Score=194.08 Aligned_cols=258 Identities=15% Similarity=0.135 Sum_probs=119.5
Q ss_pred ccceeEEeccccccc-ccccCCCCCceeEEEeeeccccccccchhhcCCCc-ccEEEeccCCcccccccCccccCCC--C
Q 041248 517 WENVRRLSLMQNQIE-ILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPS-LKVLKMSNCGHVKVLKLPFGMSKLG--S 592 (813)
Q Consensus 517 ~~~~~~l~l~~~~~~-~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~lp~~i~~L~--~ 592 (813)
.++++.|++++|.+. .+|.+..+++|++|+++ ++.+..+|.. +..+++ |++|++++| .++.+|..++.+. +
T Consensus 329 l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~-~N~l~~lp~~-l~~l~~~L~~L~Ls~N---~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLA-YNQITEIPAN-FCGFTEQVENLSFAHN---KLKYIPNIFDAKSVSV 403 (636)
T ss_dssp CTTCCEEECCSCCCEEECCCCEEEEEESEEECC-SSEEEECCTT-SEEECTTCCEEECCSS---CCSSCCSCCCTTCSSC
T ss_pred CCCCCEEeCcCCcCccchhhhCCCCCCCEEECC-CCccccccHh-hhhhcccCcEEEccCC---cCcccchhhhhcccCc
Confidence 344444444444444 33333344444444444 2233344433 344444 444444444 3444444433322 4
Q ss_pred CCEEeecCCCCcc-cchhhc-------CCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCcccccc
Q 041248 593 LQLLDISHAGIRE-LPEELK-------LLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLI 664 (813)
Q Consensus 593 L~~L~l~~~~i~~-lp~~~~-------~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 664 (813)
|++|++++|.+.. .|..+. .+++|++|++++| .+..+|...+..+++|++|++++|.+..++....
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~----- 477 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL----- 477 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS-----
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh-----
Confidence 4444444444432 233333 3444444444444 2334444433344444444444444443221000
Q ss_pred CCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccce
Q 041248 665 GGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEE 744 (813)
Q Consensus 665 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~ 744 (813)
......+.++++|+.|+++.|.+..++..... ..+++|+.|+++++. ++.++ ..+..+++|+.|+++++..+
T Consensus 478 ---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~-~~l~~L~~L~Ls~N~-l~~ip-~~~~~l~~L~~L~Ls~N~~l-- 549 (636)
T 4eco_A 478 ---KDENENFKNTYLLTSIDLRFNKLTKLSDDFRA-TTLPYLVGIDLSYNS-FSKFP-TQPLNSSTLKGFGIRNQRDA-- 549 (636)
T ss_dssp ---EETTEECTTGGGCCEEECCSSCCCBCCGGGST-TTCTTCCEEECCSSC-CSSCC-CGGGGCSSCCEEECCSCBCT--
T ss_pred ---ccccccccccCCccEEECcCCcCCccChhhhh-ccCCCcCEEECCCCC-CCCcC-hhhhcCCCCCEEECCCCccc--
Confidence 00000122333555555555554433322110 023456666666542 22233 23555666666666442211
Q ss_pred eeecccccCC-CCCCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecCch
Q 041248 745 LKVDYTEIAP-KRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCNA 798 (813)
Q Consensus 745 l~~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~ 798 (813)
......+ .+.....+++|+.|+|++|. ++.+|.. ..++|+.|++++|+-
T Consensus 550 ---s~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 550 ---QGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp ---TCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTT
T ss_pred ---ccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCC
Confidence 0111111 12334589999999999987 5888843 238999999999964
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=1.7e-17 Score=175.22 Aligned_cols=226 Identities=15% Similarity=0.150 Sum_probs=174.2
Q ss_pred CceeEEEeeeccccc---cccchhhcCCCcccEEEecc-CCccccc-ccCccccCCCCCCEEeecCCCCc-ccchhhcCC
Q 041248 540 PHLLTLFLDFNYKLE---MITDGFFQCMPSLKVLKMSN-CGHVKVL-KLPFGMSKLGSLQLLDISHAGIR-ELPEELKLL 613 (813)
Q Consensus 540 ~~L~~L~l~~~~~~~---~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~lp~~i~~L~~L~~L~l~~~~i~-~lp~~~~~l 613 (813)
.+++.|+++++ .+. .+|.. |..+++|++|++++ | .+. .+|..++++++|++|++++|.+. .+|..+.++
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n---~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGIN---NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEET---TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCC---cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 68999999954 455 46665 89999999999995 7 555 78999999999999999999998 889999999
Q ss_pred CCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCC-CCcEEEEEEcchh-
Q 041248 614 VNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLR-YLEVLELTLRSYD- 691 (813)
Q Consensus 614 ~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~- 691 (813)
++|++|++++|.....+|.. ++.+++|++|++++|.+.+. ....+..++ +|+.|+++.|...
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~---------------~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA---------------IPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp TTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE---------------CCGGGGCCCTTCCEEECCSSEEEE
T ss_pred CCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc---------------CCHHHhhhhhcCcEEECcCCeeec
Confidence 99999999999543478876 99999999999998876532 225677887 9999999988764
Q ss_pred hHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeec
Q 041248 692 ALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTME 771 (813)
Q Consensus 692 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 771 (813)
..+... ..+ .|+.|+++++. +.......+..+++|+.|+++++. +... ++....+++|++|+++
T Consensus 189 ~~~~~~---~~l-~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~----------~~~~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 189 KIPPTF---ANL-NLAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNS-LAFD----------LGKVGLSKNLNGLDLR 252 (313)
T ss_dssp ECCGGG---GGC-CCSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSE-ECCB----------GGGCCCCTTCCEEECC
T ss_pred cCChHH---hCC-cccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCc-eeee----------cCcccccCCCCEEECc
Confidence 222222 222 39999999864 333333467889999999999853 3321 1222468999999999
Q ss_pred cCcCCCccc-chhcCCCCceEeeecCchhhhh
Q 041248 772 RCHKLKDLT-FLVCAPSLKSLSLYGCNAMEEI 802 (813)
Q Consensus 772 ~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i 802 (813)
+|.....+| .+..+++|++|+++++.--..+
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 987554677 6889999999999998644333
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=1.5e-17 Score=175.19 Aligned_cols=245 Identities=19% Similarity=0.163 Sum_probs=189.3
Q ss_pred eEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc---CccccCCCCCCEEe
Q 041248 521 RRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL---PFGMSKLGSLQLLD 597 (813)
Q Consensus 521 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l---p~~i~~L~~L~~L~ 597 (813)
+.++...+.+..+|. ...++|+.|+++ ++.+..+|..+|.++++|++|++++| .++.+ |..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~-~n~l~~i~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSSN---GLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS---CCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECC-CCccCccCHhHhhccccCCEEECCCC---ccCcccCcccccccccccCEEE
Confidence 357777777877765 234799999999 56788999888999999999999999 66654 56777899999999
Q ss_pred ecCCCCcccchhhcCCCCCcEEeccCcccccccch-hhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhc
Q 041248 598 ISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLG 676 (813)
Q Consensus 598 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 676 (813)
+++|.+..+|..+..+++|++|++++| .+..+|. ..+..+++|++|++++|.+.... ...+..
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~~ 148 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF---------------NGIFNG 148 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECS---------------TTTTTT
T ss_pred CCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccc---------------hhhccc
Confidence 999999999999999999999999999 5677764 34899999999999988765432 234678
Q ss_pred CCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCC
Q 041248 677 LRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKR 756 (813)
Q Consensus 677 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 756 (813)
+++|+.|+++.|..... ........+++|+.|+++++ .++.+....+..+++|+.|+++++ .+..+....+
T Consensus 149 l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~------ 219 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPY------ 219 (306)
T ss_dssp CTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGG------
T ss_pred CcCCCEEECCCCccccc-cchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhc------
Confidence 89999999988776431 11223334568999999996 455554456888999999999984 4554333222
Q ss_pred CCcccccCcceEeeccCcCCCccc-chhcCC-CCceEeeecCch
Q 041248 757 SEPFVFRSLHRVTMERCHKLKDLT-FLVCAP-SLKSLSLYGCNA 798 (813)
Q Consensus 757 ~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~-~L~~L~l~~c~~ 798 (813)
..+++|+.|++++|......| .+..+| +|+.|++++++-
T Consensus 220 ---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 220 ---KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ---TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ---cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 378999999999986444444 466674 999999998753
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=4e-17 Score=189.48 Aligned_cols=267 Identities=18% Similarity=0.185 Sum_probs=166.6
Q ss_pred ccCccceeEEeccccccccccc-CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccc-ccCc-cccCC
Q 041248 514 VEGWENVRRLSLMQNQIEILSE-VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVL-KLPF-GMSKL 590 (813)
Q Consensus 514 ~~~~~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~lp~-~i~~L 590 (813)
....+.++.|++++|.+..+|. +..+++|++|+++ ++.+..+++..+..+++|++|++++| .+. .+|. .++.+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n---~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS-ANKFENLCQISASNFPSLTHLSIKGN---TKRLELGTGCLENL 349 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECT-TCCCSBGGGGCGGGCTTCSEEECCSC---SSCCBCCSSTTTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECc-cCCcCcCchhhhhccCcCCEEECCCC---Ccccccchhhhhcc
Confidence 3455678888888888877754 6778888888888 55566666555788888888888888 554 4543 47788
Q ss_pred CCCCEEeecCCCCccc---chhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCC-cc------
Q 041248 591 GSLQLLDISHAGIREL---PEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPS-ED------ 660 (813)
Q Consensus 591 ~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~-~~------ 660 (813)
++|++|++++|.+..+ |..+..+++|++|++++|. +..++...++.+++|++|++++|.+....... +.
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 8888888888887765 5667888888888888884 44554434788888888888887766542110 00
Q ss_pred -cccc--CCccchhHHhhcCCCCcEEEEEEcchhhHHh-hhcchhhhhcceeeeecccCCcccccccccccccccceeee
Q 041248 661 -SVLI--GGGEVLVHELLGLRYLEVLELTLRSYDALQF-FLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCI 736 (813)
Q Consensus 661 -~~~~--~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l 736 (813)
..+. .........+..+++|+.|+++.|....... .......+++|+.|++++| .+..+....+..+++|+.|++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEEC
Confidence 0000 0011122345566666777666665432110 1112233446677777665 333333335666677777777
Q ss_pred cccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCccc--chhcCCCCceEeeecCch
Q 041248 737 RSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT--FLVCAPSLKSLSLYGCNA 798 (813)
Q Consensus 737 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~ 798 (813)
+++ .+....+..+ ..+++| .|++++|. +..++ .+..+++|+.|++++++-
T Consensus 508 s~N-~l~~~~~~~l---------~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 508 SHN-RLTSSSIEAL---------SHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CSS-CCCGGGGGGG---------TTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CCC-ccCcCChhHh---------Cccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCCCc
Confidence 663 3333333333 267777 78888875 44443 356778888888877653
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=6.7e-17 Score=168.34 Aligned_cols=221 Identities=18% Similarity=0.209 Sum_probs=134.7
Q ss_pred eEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeec
Q 041248 521 RRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDIS 599 (813)
Q Consensus 521 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~ 599 (813)
+.++...+.+..+|. ...++|+.|+++ ++.+..++...|..+++|++|++++| .++.+ |..+.++++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~-~n~i~~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLH-GNRISHVPAASFRACRNLTILWLHSN---VLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEee-CCcCCccCHHHcccCCCCCEEECCCC---ccceeCHhhcCCccCCCEEeCC
Confidence 445555566655543 234577777777 45566666666777777777777777 66655 5667777777777777
Q ss_pred CCC-Cccc-chhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcC
Q 041248 600 HAG-IREL-PEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGL 677 (813)
Q Consensus 600 ~~~-i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 677 (813)
+|. +..+ |..+..+++|++|++++| .+..++...+.++++|++|++++|.+..++. ..+..+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~~~l 152 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPD---------------DTFRDL 152 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------TTTTTC
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCH---------------hHhccC
Confidence 775 7666 556777777777777777 3455544446777777777777766655431 235566
Q ss_pred CCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCC
Q 041248 678 RYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRS 757 (813)
Q Consensus 678 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 757 (813)
++|+.|+++.|.+..++.. ....+++|+.|+++++. +..+....+..+++|+.|+++++ .+..+.+..+.
T Consensus 153 ~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~------ 222 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALA------ 222 (285)
T ss_dssp TTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHT------
T ss_pred CCccEEECCCCcccccCHH--HhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCHHHcc------
Confidence 6677777666554432211 11123456666666642 33333335666777777777763 34433333222
Q ss_pred CcccccCcceEeeccCcC
Q 041248 758 EPFVFRSLHRVTMERCHK 775 (813)
Q Consensus 758 ~~~~l~~L~~L~l~~c~~ 775 (813)
.+++|+.|++++++.
T Consensus 223 ---~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 223 ---PLRALQYLRLNDNPW 237 (285)
T ss_dssp ---TCTTCCEEECCSSCE
T ss_pred ---cCcccCEEeccCCCc
Confidence 567777777777653
No 44
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=3.1e-17 Score=195.14 Aligned_cols=254 Identities=18% Similarity=0.211 Sum_probs=143.4
Q ss_pred cceeEEecccccccc-cc-cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccc-ccCccccCCCCCC
Q 041248 518 ENVRRLSLMQNQIEI-LS-EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVL-KLPFGMSKLGSLQ 594 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~lp~~i~~L~~L~ 594 (813)
+.++.|++.+|.+.. ++ .+..+++|++|++++ +.+....+..+..+++|++|++++| .+. .+|..++.+++|+
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n---~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF-NYLSGTIPSSLGSLSKLRDLKLWLN---MLEGEIPQELMYVKTLE 469 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS-SEEESCCCGGGGGCTTCCEEECCSS---CCCSCCCGGGGGCTTCC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcC-CcccCcccHHHhcCCCCCEEECCCC---cccCcCCHHHcCCCCce
Confidence 356666666665543 22 245566666666663 3343322233566666666666666 444 4555666666666
Q ss_pred EEeecCCCCc-ccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHH
Q 041248 595 LLDISHAGIR-ELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHE 673 (813)
Q Consensus 595 ~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (813)
+|++++|.+. .+|..+.++++|++|++++|.....+|.. ++.+++|++|++++|.+.+. .+..
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~---------------~p~~ 533 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGN---------------IPAE 533 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEE---------------CCGG
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccCc---------------CCHH
Confidence 6666666655 45666666666666666666433355554 66666666666665554421 2245
Q ss_pred hhcCCCCcEEEEEEcchh-hHHhhhc------------------------------------------------------
Q 041248 674 LLGLRYLEVLELTLRSYD-ALQFFLS------------------------------------------------------ 698 (813)
Q Consensus 674 l~~L~~L~~L~l~~~~~~-~~~~~~~------------------------------------------------------ 698 (813)
+..+++|+.|+++.|... .++....
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 667777777777665542 1111000
Q ss_pred -------------chhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCc
Q 041248 699 -------------SNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSL 765 (813)
Q Consensus 699 -------------~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L 765 (813)
....+++|+.|+++++.-...++ ..+..+++|+.|+++++ .+....|. ....+++|
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N-~l~g~ip~---------~l~~L~~L 682 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHN-DISGSIPD---------EVGDLRGL 682 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC-GGGGGCTTCCEEECCSS-CCCSCCCG---------GGGGCTTC
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCC-HHHhccccCCEEeCcCC-ccCCCCCh---------HHhCCCCC
Confidence 00112345566666543322333 24666666666766653 23322222 23478888
Q ss_pred ceEeeccCcCCCccc-chhcCCCCceEeeecCchhhhh
Q 041248 766 HRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNAMEEI 802 (813)
Q Consensus 766 ~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i 802 (813)
+.|+|++|.....+| .+..+++|++|++++++---.|
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 888888887666677 5678888888888887644333
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=188.03 Aligned_cols=149 Identities=23% Similarity=0.280 Sum_probs=125.5
Q ss_pred EEEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCc
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGH 577 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 577 (813)
.+.+.+.++..+|. .-.+.+++|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n-- 86 (570)
T 2z63_A 11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN-- 86 (570)
T ss_dssp EEECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC--
T ss_pred EEEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECC-CCcCCccCcccccCchhCCEEeCcCC--
Confidence 44555556667775 23467999999999998875 47899999999999 55688888888999999999999999
Q ss_pred ccccccC-ccccCCCCCCEEeecCCCCcccch-hhcCCCCCcEEeccCcccccc--cchhhhcCCCCCceeeccccccCC
Q 041248 578 VKVLKLP-FGMSKLGSLQLLDISHAGIRELPE-ELKLLVNLKCLNLRWTRMLNK--IPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 578 ~~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
.++.+| ..++++.+|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 87 -PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp -CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred -cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccce
Confidence 788775 689999999999999999999886 59999999999999994 554 6886 9999999999999988765
Q ss_pred CC
Q 041248 654 SE 655 (813)
Q Consensus 654 ~~ 655 (813)
.+
T Consensus 164 ~~ 165 (570)
T 2z63_A 164 IY 165 (570)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=3.3e-17 Score=189.20 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=102.4
Q ss_pred CCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEeecCCCCcccchh-hcCCC
Q 041248 537 PTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDISHAGIRELPEE-LKLLV 614 (813)
Q Consensus 537 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~ 614 (813)
..+++++.|+++ ++.+..+|..+|..+++|++|+|++| .++.+| ..++++++|++|+|++|.++.+|.. +++++
T Consensus 48 l~l~~l~~l~l~-~~~l~~lp~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 48 ITLNNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDL---QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGGCCCSEEEES-SCEESEECTHHHHHCCCCSEEECTTS---CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCCceEEEee-CCCCCCcCHHHHccCCCCcEEECCCC---CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 346789999999 66788999999999999999999999 888775 4899999999999999999988765 69999
Q ss_pred CCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCC
Q 041248 615 NLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEE 656 (813)
Q Consensus 615 ~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 656 (813)
+|++|++++| .+..+|.+.++++++|++|++++|.+.++++
T Consensus 124 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 124 LLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 9999999999 5789998867999999999999998877653
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.72 E-value=4e-17 Score=181.34 Aligned_cols=262 Identities=16% Similarity=0.140 Sum_probs=164.5
Q ss_pred CCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC
Q 041248 505 GAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP 584 (813)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp 584 (813)
+..+..++ ....++++.|++++|.+..++ +..+++|++|+++ ++.+..++ +..+++|++|++++| .++.+|
T Consensus 73 ~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~-~N~l~~l~---~~~l~~L~~L~l~~N---~l~~l~ 143 (457)
T 3bz5_A 73 SNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD-TNKLTKLD---VSQNPLLTYLNCARN---TLTEID 143 (457)
T ss_dssp SSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC-SSCCSCCC---CTTCTTCCEEECTTS---CCSCCC
T ss_pred CCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECC-CCcCCeec---CCCCCcCCEEECCCC---ccceec
Confidence 33444443 455667888888888877764 6777888888887 44566654 667778888888887 666654
Q ss_pred ccccCCCCCCEEeecCC-CCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCcc---
Q 041248 585 FGMSKLGSLQLLDISHA-GIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSED--- 660 (813)
Q Consensus 585 ~~i~~L~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~--- 660 (813)
++.+++|++|++++| .+..+ .+..+++|++|++++| .+..+| ++.+++|++|++++|.+.+++...++
T Consensus 144 --l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~L~~L~l~~N~l~~~~l~~l~~L~ 215 (457)
T 3bz5_A 144 --VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD---VSQNKLLNRLNCDTNNITKLDLNQNIQLT 215 (457)
T ss_dssp --CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC---CTTCTTCCEEECCSSCCSCCCCTTCTTCS
T ss_pred --cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec---cccCCCCCEEECcCCcCCeeccccCCCCC
Confidence 666666777777666 44444 3556666666666666 355554 45666666666666655544221111
Q ss_pred -ccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcc----------eeeeecccCCccccccccccccc
Q 041248 661 -SVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCI----------RSLFLNKLGGTKSIHATAFSDLK 729 (813)
Q Consensus 661 -~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L----------~~L~l~~~~~~~~l~~~~l~~l~ 729 (813)
..+.......+. +..+++|+.|+++.|.....+ ...+++| +.|++++|.....++ +..++
T Consensus 216 ~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~-----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~ 286 (457)
T 3bz5_A 216 FLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCR 286 (457)
T ss_dssp EEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCT
T ss_pred EEECcCCcccccC-ccccCCCCEEEeeCCcCCCcC-----HHHCCCCCEEeccCCCCCEEECCCCccCCccc---ccccc
Confidence 001111111122 678899999999988876543 1112244 455555554444443 35678
Q ss_pred ccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecC
Q 041248 730 HLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGC 796 (813)
Q Consensus 730 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c 796 (813)
+|+.|++++|..++.+......... .....+++|+.|++++|. ++.++ ++.+++|+.|+++++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~--L~l~~~~~L~~L~L~~N~-l~~l~-l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITE--LDLSQNPKLVYLYLNNTE-LTELD-VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSC--CCCTTCTTCCEEECTTCC-CSCCC-CTTCTTCSEEECCSS
T ss_pred cCCEEECCCCcccceeccCCCcceE--echhhcccCCEEECCCCc-ccccc-cccCCcCcEEECCCC
Confidence 9999999999888876543222111 123467899999999864 66675 888999999999874
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.72 E-value=7.4e-17 Score=183.54 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=108.4
Q ss_pred eEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeec
Q 041248 521 RRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDIS 599 (813)
Q Consensus 521 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~ 599 (813)
+.+++++|.+..+|... .++|++|+++ ++.+..+++..|..+++|++|++++| .++.+ |..++++++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~~~-~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL-SQKTTILNIS-QNYISELWTSDILSLSKLRILIISHN---RIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCCSC-CTTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSS---CCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcccccccc-cccccEEECC-CCcccccChhhccccccccEEecCCC---ccCCcChHHhhcccCCCEEecC
Confidence 67899999999887532 2899999999 66688888777999999999999999 88877 7789999999999999
Q ss_pred CCCCcccchhhcCCCCCcEEeccCcccccc--cchhhhcCCCCCceeeccccccCC
Q 041248 600 HAGIRELPEELKLLVNLKCLNLRWTRMLNK--IPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 600 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
+|.++.+|.. .+++|++|++++|. +.. +|.. ++++++|++|++++|.+..
T Consensus 78 ~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 78 HNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp SSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred CCceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccch
Confidence 9999999987 89999999999995 554 5665 9999999999999887653
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=1.7e-16 Score=181.60 Aligned_cols=250 Identities=20% Similarity=0.164 Sum_probs=165.2
Q ss_pred eEEEEcCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcc
Q 041248 499 KFLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHV 578 (813)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (813)
..+...+..+..+|.... ++++.|++++|.+..++. .+++|++|+++ ++.+..+|. .+++|++|++++|
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls-~N~l~~lp~----~l~~L~~L~Ls~N--- 111 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVS-GNQLTSLPV----LPPGLLELSIFSN--- 111 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEEC-SCCCSCCCC----CCTTCCEEEECSC---
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcC-CCcCCcCCC----CCCCCCEEECcCC---
Confidence 445556666666765333 689999999999988876 67899999999 556777776 5789999999999
Q ss_pred cccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCC-
Q 041248 579 KVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEP- 657 (813)
Q Consensus 579 ~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~- 657 (813)
.++.+|. .+.+|++|++++|.++.+|.. +++|++|++++| .+..+|.. +++|+.|++++|.+..++..
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~----~~~L~~L~L~~N~l~~l~~~~ 180 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSLPMLP 180 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCCCCC
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc----cCCCCEEECCCCCCCCCcccC
Confidence 8888886 568899999999999988874 488999999988 56777652 45677777777766654310
Q ss_pred -Ccc-ccccCCccchhHHh-hcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCccccccccccccccccee
Q 041248 658 -SED-SVLIGGGEVLVHEL-LGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNEL 734 (813)
Q Consensus 658 -~~~-~~~~~~~~~~~~~l-~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L 734 (813)
.+. ..+. ...+..+ ..+++|+.|+++.|.+..++. .+++|+.|++++| .++.++ ..+++|+.|
T Consensus 181 ~~L~~L~Ls---~N~l~~l~~~~~~L~~L~L~~N~l~~l~~------~~~~L~~L~Ls~N-~L~~lp----~~l~~L~~L 246 (622)
T 3g06_A 181 SGLQELSVS---DNQLASLPTLPSELYKLWAYNNRLTSLPA------LPSGLKELIVSGN-RLTSLP----VLPSELKEL 246 (622)
T ss_dssp TTCCEEECC---SSCCSCCCCCCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSS-CCSCCC----CCCTTCCEE
T ss_pred CCCcEEECC---CCCCCCCCCccchhhEEECcCCcccccCC------CCCCCCEEEccCC-ccCcCC----CCCCcCcEE
Confidence 000 0000 0000001 112455555555554443221 1235666666654 333333 234566677
Q ss_pred eecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCchh
Q 041248 735 CIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNAM 799 (813)
Q Consensus 735 ~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l 799 (813)
+++++ .++.+ |. .+++|+.|++++|. ++.+| .+..+++|+.|++++++--
T Consensus 247 ~Ls~N-~L~~l-----------p~--~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 247 MVSGN-RLTSL-----------PM--LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ECCSS-CCSCC-----------CC--CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred ECCCC-CCCcC-----------Cc--ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCCC
Confidence 76653 33322 11 57899999999984 67887 5788999999999998743
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.9e-17 Score=172.55 Aligned_cols=216 Identities=22% Similarity=0.298 Sum_probs=172.2
Q ss_pred EEEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHV 578 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (813)
+.+.+.++..+|. .-.+.+++|++++|.+..++. +..+++|++|+++ ++.+..+++..|..+++|++|++++|
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n--- 90 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH-SNVLARIDAAAFTGLALLEQLDLSDN--- 90 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSC---
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECC-CCccceeCHhhcCCccCCCEEeCCCC---
Confidence 4444555666664 335689999999999988753 7889999999999 55677886667999999999999999
Q ss_pred c-cccc-CccccCCCCCCEEeecCCCCccc-chhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCC
Q 041248 579 K-VLKL-PFGMSKLGSLQLLDISHAGIREL-PEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 579 ~-~~~l-p~~i~~L~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
. +..+ |..+..+++|++|++++|.+..+ |..+..+++|++|++++| .+..+|...++.+++|++|++++|++..++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccC
Confidence 5 7777 67899999999999999999987 556889999999999999 577888766899999999999998776543
Q ss_pred CCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceee
Q 041248 656 EPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELC 735 (813)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~ 735 (813)
. ..+..+++|+.|+++.|...... ......+++|+.|+++++ .++.++...+..+++|+.|+
T Consensus 170 ~---------------~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 170 E---------------RAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp T---------------TTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEE
T ss_pred H---------------HHhcCccccCEEECCCCcccccC--HhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEe
Confidence 1 34678899999999988765432 122233468999999986 45555544578899999999
Q ss_pred ecccC
Q 041248 736 IRSAV 740 (813)
Q Consensus 736 l~~~~ 740 (813)
+++++
T Consensus 232 l~~N~ 236 (285)
T 1ozn_A 232 LNDNP 236 (285)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 99854
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=1.1e-16 Score=188.49 Aligned_cols=173 Identities=19% Similarity=0.176 Sum_probs=132.2
Q ss_pred eEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeec
Q 041248 521 RRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDIS 599 (813)
Q Consensus 521 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~ 599 (813)
+.++.+++.+..+|... .+++++|+++ ++.+..++...|.++++|++|++++| .+..+ |..++++++|++|+++
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFN---TISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECC-SSCCCCCCGGGGGGGTTCSEEECCSS---CCCCCCTTHHHHCTTCCEEECC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECC-CCCCCCcCHHHHhCCCcCcEEECCCC---ccCccCHHHHhcccCcCEEECC
Confidence 45777888888776522 3799999999 56788888888999999999999999 77776 6778999999999999
Q ss_pred CCCCcccch-hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCC
Q 041248 600 HAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLR 678 (813)
Q Consensus 600 ~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 678 (813)
+|.++.+|. .++++++|++|++++| .+..+|...++++++|++|++++|.+.+.+. ..+.+++
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------~~~~~l~ 145 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKL---------------GTQVQLE 145 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCC---------------CSSSCCT
T ss_pred CCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCc---------------hhhcccc
Confidence 999999997 4999999999999999 5677876559999999999999988776532 2345677
Q ss_pred CCcEEEEEEcchhhHHhhhcchhhhhcceeeeeccc
Q 041248 679 YLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKL 714 (813)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 714 (813)
+|+.|+++.|...............++|+.|+++++
T Consensus 146 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp TCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred cCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 777777776654332211100111236666766664
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=187.62 Aligned_cols=137 Identities=21% Similarity=0.259 Sum_probs=114.3
Q ss_pred CccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCc-cccC
Q 041248 513 DVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPF-GMSK 589 (813)
Q Consensus 513 ~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~-~i~~ 589 (813)
.....+.++.|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|++++| .++.+|. .+++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n---~l~~l~~~~~~~ 122 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVET---NLASLENFPIGH 122 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTS---CCCCSTTCSCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc-CCcCCccCHhhhcCcccccccccccc---ccccCCCccccc
Confidence 34567889999999999988743 7889999999999 55688888777999999999999999 8888875 6999
Q ss_pred CCCCCEEeecCCCCcc--cchhhcCCCCCcEEeccCcccccccchhhhcCCCCC----ceeeccccccCCC
Q 041248 590 LGSLQLLDISHAGIRE--LPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWL----RVLRMFAIGFENS 654 (813)
Q Consensus 590 L~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L----~~L~l~~~~~~~~ 654 (813)
+++|++|++++|.++. +|..++++++|++|++++| .+..++...++.+++| ++|+++.|.+..+
T Consensus 123 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred cccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCceec
Confidence 9999999999999885 7999999999999999999 4566654447777777 7777777765543
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=190.39 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=122.5
Q ss_pred eEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeec
Q 041248 521 RRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDIS 599 (813)
Q Consensus 521 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~ 599 (813)
+..+.+++++..+|. ..++|++|+++ ++.+..+++..|.++++|++|+|++|. .+..+ |..++++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~--~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQY--TPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTC--CCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCC--CccccCHHHhcCCCCCCEEECC
Confidence 456777788888877 56899999999 566888876669999999999999994 34566 7789999999999999
Q ss_pred CCCCccc-chhhcCCCCCcEEeccCcccccccch-hhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcC
Q 041248 600 HAGIREL-PEELKLLVNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGL 677 (813)
Q Consensus 600 ~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 677 (813)
+|.+..+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+.+... ...++++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--------------~~~~~~L 147 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL--------------HPSFGKL 147 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC--------------CGGGGTC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc--------------chhHhhC
Confidence 9999977 78899999999999999953333443 348899999999999988776431 1357788
Q ss_pred CCCcEEEEEEcch
Q 041248 678 RYLEVLELTLRSY 690 (813)
Q Consensus 678 ~~L~~L~l~~~~~ 690 (813)
++|+.|+++.|.+
T Consensus 148 ~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 148 NSLKSIDFSSNQI 160 (844)
T ss_dssp SSCCEEEEESSCC
T ss_pred CCCCEEECCCCcC
Confidence 8888888887765
No 54
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.70 E-value=6.4e-17 Score=192.43 Aligned_cols=40 Identities=15% Similarity=-0.086 Sum_probs=26.8
Q ss_pred ccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCchh
Q 041248 760 FVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNAM 799 (813)
Q Consensus 760 ~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l 799 (813)
..+++|+.|++++|.....+| .++.+++|+.|++++|.-.
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 366777777777776554565 4667777777777776543
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=2.9e-16 Score=179.93 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=101.1
Q ss_pred ccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccc--cCccccC
Q 041248 514 VEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLK--LPFGMSK 589 (813)
Q Consensus 514 ~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--lp~~i~~ 589 (813)
....++++.|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|++++| .++. .|..+++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~~ 121 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSLKYLNLMGN---PYQTLGVTSLFPN 121 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHHHTTCTTCCEEECTTC---CCSSSCSSCSCTT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHHhccCCCCcEEECCCC---cccccchhhhhhc
Confidence 456678999999999888764 37888999999999 56677888777889999999999999 7764 4667888
Q ss_pred CCCCCEEeecCCC-Ccccc-hhhcCCCCCcEEeccCcccccccchhhhc------------------------CCCCCce
Q 041248 590 LGSLQLLDISHAG-IRELP-EELKLLVNLKCLNLRWTRMLNKIPRLLIS------------------------NSSWLRV 643 (813)
Q Consensus 590 L~~L~~L~l~~~~-i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~------------------------~L~~L~~ 643 (813)
+++|++|++++|. +..+| ..+..+++|++|++++|......|.. ++ .+++|++
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSE
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcccccchhhHhhcccccE
Confidence 8889999998886 66776 46778888888888877432223332 33 4566777
Q ss_pred eeccccccCC
Q 041248 644 LRMFAIGFEN 653 (813)
Q Consensus 644 L~l~~~~~~~ 653 (813)
|++++|.+.+
T Consensus 201 L~L~~n~l~~ 210 (549)
T 2z81_A 201 LELRDTNLAR 210 (549)
T ss_dssp EEEESCBCTT
T ss_pred EEccCCcccc
Confidence 7777666554
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=1e-17 Score=177.26 Aligned_cols=241 Identities=16% Similarity=0.122 Sum_probs=165.8
Q ss_pred cceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCE
Q 041248 518 ENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQL 595 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~ 595 (813)
++++.|++++|.+..++ .+..+++|++|+++ ++.+..+++ |..+++|++|++++| .++.+| .+++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~Ls~n---~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LESLSTLRTLDLNNN---YVQELL----VGPSIET 103 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECT-TSCCEEEEE--ETTCTTCCEEECCSS---EEEEEE----ECTTCCE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECC-CCcCCcchh--hhhcCCCCEEECcCC---cccccc----CCCCcCE
Confidence 46788888888877754 36778888888888 445555554 777888888888888 676665 2377888
Q ss_pred EeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHh-
Q 041248 596 LDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHEL- 674 (813)
Q Consensus 596 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 674 (813)
|++++|.+..+|.. .+++|++|++++| .+..++...++.+++|++|++++|.+.+.. ...+
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------------~~~~~ 165 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN---------------FAELA 165 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEE---------------GGGGG
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCccc---------------HHHHh
Confidence 88888888877643 4678888888888 456665544777888888888877665431 1223
Q ss_pred hcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCC
Q 041248 675 LGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAP 754 (813)
Q Consensus 675 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 754 (813)
..+++|+.|+++.|.+..++... .+++|+.|+++++ .++.++. .+..+++|+.|+++++ .++.+ +..+
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~~~----~l~~L~~L~Ls~N-~l~~l~~-~~~~l~~L~~L~L~~N-~l~~l-~~~~---- 233 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRNN-KLVLI-EKAL---- 233 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSS-CCCEECG-GGGGGTTCSEEECTTS-CCCEE-CTTC----
T ss_pred hccCcCCEEECCCCcCccccccc----ccccCCEEECCCC-cCCcchh-hhcccCcccEEECcCC-cccch-hhHh----
Confidence 46778888888877765543222 2457888888875 4444543 3677788888888874 45543 2222
Q ss_pred CCCCcccccCcceEeeccCcCC-Cccc-chhcCCCCceEeeecCchhhhhh
Q 041248 755 KRSEPFVFRSLHRVTMERCHKL-KDLT-FLVCAPSLKSLSLYGCNAMEEII 803 (813)
Q Consensus 755 ~~~~~~~l~~L~~L~l~~c~~l-~~l~-~l~~l~~L~~L~l~~c~~l~~i~ 803 (813)
..+++|+.|++++|+.. ..+| ++..+++|+.|++++|+.++...
T Consensus 234 -----~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 234 -----RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp -----CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred -----hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 36788888888887643 3454 56778888888888777666543
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=172.11 Aligned_cols=250 Identities=19% Similarity=0.209 Sum_probs=184.9
Q ss_pred EEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeecC
Q 041248 522 RLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDISH 600 (813)
Q Consensus 522 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~~ 600 (813)
..+.+++.++.+|. .-.++|++|+++ ++.+..++...|.++++|++|++++| .++.+ |..++++++|++|++++
T Consensus 35 ~c~~~~~~l~~iP~-~~~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 35 ICKGSSGSLNSIPS-GLTEAVKSLDLS-NNRITYISNSDLQRCVNLQALVLTSN---GINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EEECCSTTCSSCCT-TCCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTS---CCCEECTTTTTTCTTCCEEECCS
T ss_pred EeeCCCCCcccccc-cccccCcEEECC-CCcCcccCHHHhccCCCCCEEECCCC---ccCccCHhhcCCCCCCCEEECCC
Confidence 36677788888765 234699999999 66788888877999999999999999 88877 45799999999999999
Q ss_pred CCCcccchh-hcCCCCCcEEeccCcccccccch-hhhcCCCCCceeeccccc-cCCCCCCCccccccCCccchhHHhhcC
Q 041248 601 AGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIG-FENSEEPSEDSVLIGGGEVLVHELLGL 677 (813)
Q Consensus 601 ~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L 677 (813)
|.++.+|.. +.++++|++|++++| .+..+|. ..++++++|++|++++|. +..++ ...+.++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~---------------~~~~~~l 173 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ---------------RKDFAGL 173 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC---------------TTTTTTC
T ss_pred CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC---------------HHHccCC
Confidence 999999987 899999999999999 5788887 458999999999999873 33221 2457889
Q ss_pred CCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCC
Q 041248 678 RYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRS 757 (813)
Q Consensus 678 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 757 (813)
++|+.|+++.|...... ......+++|+.|+++++. +..++...+..+++|+.|+++++ .++.+.+... +
T Consensus 174 ~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l------~ 243 (353)
T 2z80_A 174 TFLEELEIDASDLQSYE--PKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSEL------S 243 (353)
T ss_dssp CEEEEEEEEETTCCEEC--TTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC---------
T ss_pred CCCCEEECCCCCcCccC--HHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC-cccccccccc------c
Confidence 99999999998865431 1222335689999999864 44444333456889999999984 3443222211 1
Q ss_pred CcccccCcceEeeccCcC----CCccc-chhcCCCCceEeeecCchhhhhh
Q 041248 758 EPFVFRSLHRVTMERCHK----LKDLT-FLVCAPSLKSLSLYGCNAMEEII 803 (813)
Q Consensus 758 ~~~~l~~L~~L~l~~c~~----l~~l~-~l~~l~~L~~L~l~~c~~l~~i~ 803 (813)
.....+.++.+++.++.- +..+| ++..+++|+.|++++| .++.+.
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~ 293 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVP 293 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCC
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccC
Confidence 112456777788877642 22345 5778999999999997 455544
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=3.4e-16 Score=158.36 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=57.1
Q ss_pred ceeEEEeeeccccccccchhhcCCCcccEEEeccCCccc-ccccCc-cccCCCCCCEEeecC-CCCcccch-hhcCCCCC
Q 041248 541 HLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVK-VLKLPF-GMSKLGSLQLLDISH-AGIRELPE-ELKLLVNL 616 (813)
Q Consensus 541 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~lp~-~i~~L~~L~~L~l~~-~~i~~lp~-~~~~l~~L 616 (813)
+|+.|+++ ++.+..++...|..+++|++|++++| . ++.+|. .+.++++|++|++++ |.++.+|. .+..+++|
T Consensus 32 ~l~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n---~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLI-ETHLRTIPSHAFSNLPNISRIYVSID---VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TCCEEEEE-SCCCSEECTTTTTTCTTCCEEEEECC---SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred cccEEEEe-CCcceEECHHHccCCCCCcEEeCCCC---CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 55566665 34455555544555666666666665 4 555543 455566666666665 55655553 35556666
Q ss_pred cEEeccCcccccccchhhhcCCCCCc---eeecccc
Q 041248 617 KCLNLRWTRMLNKIPRLLISNSSWLR---VLRMFAI 649 (813)
Q Consensus 617 ~~L~l~~~~~l~~lp~~~i~~L~~L~---~L~l~~~ 649 (813)
++|++++| .+..+|. ++.+++|+ +|++++|
T Consensus 108 ~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 108 KFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp CEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred CEEeCCCC-CCccccc--cccccccccccEEECCCC
Confidence 66666665 3455554 55555555 5655554
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.1e-17 Score=176.70 Aligned_cols=243 Identities=16% Similarity=0.093 Sum_probs=174.1
Q ss_pred ceeEEeccccccccccc-CCCCCceeEEEeeecccccc--ccchhhc-------CCCcccEEEeccCCccccc-ccCccc
Q 041248 519 NVRRLSLMQNQIEILSE-VPTCPHLLTLFLDFNYKLEM--ITDGFFQ-------CMPSLKVLKMSNCGHVKVL-KLPFGM 587 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~-------~l~~L~~L~l~~~~~~~~~-~lp~~i 587 (813)
.++.+.+.+|.+ .+|. +.. .|+.|++++ +.+.. ++.. +. .+++|++|++++| .++ .+|..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~-n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~ 115 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTD--IIKSLSLKR-LTVRAARIPSR-ILFGALRVLGISGLQELTLENL---EVTGTAPPPL 115 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHH--HHHHCCCCE-EEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE---BCBSCCCCCS
T ss_pred CceeEeeccccc-ccHHHHHH--HHhhccccc-ccccCCCcCHH-HHHHHHHhcCcCCccEEEccCC---cccchhHHHH
Confidence 455666666666 4432 222 277888874 34432 4443 22 6899999999999 776 578776
Q ss_pred --cCCCCCCEEeecCCCCcccchhhcCC-----CCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCcc
Q 041248 588 --SKLGSLQLLDISHAGIRELPEELKLL-----VNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSED 660 (813)
Q Consensus 588 --~~L~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 660 (813)
+.+++|++|++++|.++.+|..+..+ ++|++|++++| .+..+|...++++++|++|++++|.+.+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------ 188 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGE------ 188 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHH------
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcc------
Confidence 88999999999999999888888777 89999999999 46777754599999999999998764321
Q ss_pred ccccCCccchhHHh--hcCCCCcEEEEEEcchhhHHhhhcc-hhhhhcceeeeecccCCcccccccccccccccceeeec
Q 041248 661 SVLIGGGEVLVHEL--LGLRYLEVLELTLRSYDALQFFLSS-NKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIR 737 (813)
Q Consensus 661 ~~~~~~~~~~~~~l--~~L~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~ 737 (813)
...+..+ ..+++|+.|+++.|.+..++.+... ...+++|+.|+++++.-....+...+..+++|+.|+++
T Consensus 189 -------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 189 -------RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp -------HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred -------hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 1122344 7889999999998887755443322 22346899999998643333323346668999999999
Q ss_pred ccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecCc
Q 041248 738 SAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCN 797 (813)
Q Consensus 738 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~ 797 (813)
++ .++.+ + .. .+++|+.|++++| .++.+|.+..+++|+.|++++.+
T Consensus 262 ~N-~l~~i-p---------~~--~~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 262 FT-GLKQV-P---------KG--LPAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TS-CCSSC-C---------SS--CCSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred CC-ccChh-h---------hh--ccCCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 84 44432 1 11 1279999999997 47788888899999999998864
No 60
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.68 E-value=1.6e-15 Score=163.06 Aligned_cols=293 Identities=14% Similarity=0.088 Sum_probs=177.5
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc------CHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL------RLEKIQEDI 231 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i 231 (813)
+.|+||+.+++.|.+++..+ +++.|+|++|+|||||++++++.. . .+|+.+.... +...++..+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHH
Confidence 57999999999999998764 799999999999999999999874 1 6777765432 556666666
Q ss_pred HHHcCCC--------------C--CccCCCCHHHHHHHHHHHhcC-CcEEEEEecccCccc---------ccccccCCCC
Q 041248 232 GKKIGLV--------------D--DSWKSKSVEEKALDIFRSLRE-KRFVLLLDDIWERVD---------LTKMGIPLSG 285 (813)
Q Consensus 232 ~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~~~~~l~~ 285 (813)
.+.+... . ......+..+....+.+.... ++++||+||++...+ +..+....
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-- 159 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-- 159 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH--
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH--
Confidence 6655320 0 000123455555666555542 489999999975332 11121111
Q ss_pred CCCCCcEEEEEcCcccc-c------c---cC-C-CCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhC
Q 041248 286 PKNTTSKVVFTTRFVDV-C------G---SM-E-ADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECG 353 (813)
Q Consensus 286 ~~~~~s~ilvTtR~~~v-~------~---~~-~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~ 353 (813)
....+.++|+|++.... . . .. + ....+++.+|+.+|+.+++.+.+.......+ .+.+..|++.|+
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tg 236 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLD 236 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHT
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhC
Confidence 11247889999886532 1 1 01 1 1247899999999999999876532221112 356789999999
Q ss_pred CcchHHHHHHHhhcCCCCHHHHHHHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhccCCCCccccHHHH
Q 041248 354 GLPLALITIGRAMAFKKTAEEWIHAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDL 433 (813)
Q Consensus 354 GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~l 433 (813)
|+|+++..++..+....+...+.. .+...... .....+.. +.+ + ++ ..+..+..++. + ..+...+
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~l~~---l~~-~-~~-~~~~~l~~la~---g-~~~~~~l 301 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRAMK---RTLEVAKG--LIMGELEE---LRR-R-SP-RYVDILRAIAL---G-YNRWSLI 301 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHH--HHHHHHHH---HHH-H-CH-HHHHHHHHHHT---T-CCSHHHH
T ss_pred CCHHHHHHHHHHHhccccHhHHHH---HHHHHHHH--HHHHHHHH---HHh-C-Ch-hHHHHHHHHHh---C-CCCHHHH
Confidence 999999998865432122222211 11110000 00011111 112 2 55 68888888887 2 1344444
Q ss_pred HHHHHHcCCcccccccchHhhHHHHHHHHHHhcccceecCCcEE-EeHHHHHHHH
Q 041248 434 IDCWIGEGFLEESDRFSAENQGYYIVGTLVHACLLEEVEDDKVK-MHDVVRDMAL 487 (813)
Q Consensus 434 i~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~-mHdlv~~~a~ 487 (813)
.....+.. + .........+++.|++.+|+...+ ..|. -|++++++.+
T Consensus 302 ~~~~~~~~-----~-~~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVKG-----T-KIPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTT-----C-CCCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHh-----C-CCCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 43322110 0 112345677899999999998763 4555 5888888754
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=6.9e-17 Score=170.92 Aligned_cols=236 Identities=13% Similarity=0.081 Sum_probs=178.7
Q ss_pred eeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEe
Q 041248 520 VRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLD 597 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~ 597 (813)
+....+..+.+...+ .+..+++|+.|+++ ++.+..+++..|..+++|++|++++| .+...++ +..+++|++|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~-~~~l~~L~~L~ 86 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLS-GNPLSQISAADLAPFTKLELLNLSSN---VLYETLD-LESLSTLRTLD 86 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECT-TSCCCCCCHHHHTTCTTCCEEECTTS---CCEEEEE-ETTCTTCCEEE
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECc-CCccCcCCHHHhhCCCcCCEEECCCC---cCCcchh-hhhcCCCCEEE
Confidence 344445555554321 13567899999999 56788888777999999999999999 7877764 99999999999
Q ss_pred ecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcC
Q 041248 598 ISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGL 677 (813)
Q Consensus 598 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 677 (813)
+++|.++.+|. +++|++|++++| .+..++.. .+++|++|++++|.+...+ ...+..+
T Consensus 87 Ls~n~l~~l~~----~~~L~~L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~~~---------------~~~~~~l 143 (317)
T 3o53_A 87 LNNNYVQELLV----GPSIETLHAANN-NISRVSCS---RGQGKKNIYLANNKITMLR---------------DLDEGCR 143 (317)
T ss_dssp CCSSEEEEEEE----CTTCCEEECCSS-CCSEEEEC---CCSSCEEEECCSSCCCSGG---------------GBCTGGG
T ss_pred CcCCccccccC----CCCcCEEECCCC-ccCCcCcc---ccCCCCEEECCCCCCCCcc---------------chhhhcc
Confidence 99999998873 489999999999 56777653 4789999999998876642 1346778
Q ss_pred CCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCC
Q 041248 678 RYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRS 757 (813)
Q Consensus 678 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 757 (813)
++|+.|+++.|......... ....+++|+.|+++++. ++.++ ....+++|+.|++++ +.++.+.+. +
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~--~~~~l~~L~~L~Ls~-N~l~~l~~~-~------- 210 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQYNF-IYDVK--GQVVFAKLKTLDLSS-NKLAFMGPE-F------- 210 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEECTTSC-CCEEE--CCCCCTTCCEEECCS-SCCCEECGG-G-------
T ss_pred CCCCEEECCCCCCCcccHHH-HhhccCcCCEEECCCCc-Ccccc--cccccccCCEEECCC-CcCCcchhh-h-------
Confidence 99999999988775432111 11224689999999964 44444 244589999999998 456654333 2
Q ss_pred CcccccCcceEeeccCcCCCccc-chhcCCCCceEeeecCchh
Q 041248 758 EPFVFRSLHRVTMERCHKLKDLT-FLVCAPSLKSLSLYGCNAM 799 (813)
Q Consensus 758 ~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l 799 (813)
..+++|+.|++++|. ++.+| .+..+++|+.|++++++-.
T Consensus 211 --~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 211 --QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp --GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCB
T ss_pred --cccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCcc
Confidence 378999999999974 77787 5678999999999987654
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=9.8e-16 Score=175.83 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=109.7
Q ss_pred eeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEee
Q 041248 520 VRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDI 598 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l 598 (813)
.+.++++++.++.+|... .++|++|+++ ++.+..+++..|.++++|++|++++| .++.+ |..++++++|++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLS-QNSISELRMPDISFLSELRVLRLSHN---RIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECC-SSCCCCCCGGGTTTCTTCCEEECCSC---CCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECC-CCCccccChhhhccCCCccEEECCCC---CCCcCCHHHhCCCCCCCEEEC
Confidence 478999999999887532 3899999999 66788888777999999999999999 88877 677999999999999
Q ss_pred cCCCCcccchhhcCCCCCcEEeccCcccccccc--hhhhcCCCCCceeeccccccCC
Q 041248 599 SHAGIRELPEELKLLVNLKCLNLRWTRMLNKIP--RLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 599 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
++|.++.+|.. .+++|++|++++| .+..+| .. ++++++|++|++++|.+..
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCCT
T ss_pred CCCcCCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCcccc
Confidence 99999999987 8999999999999 466655 54 9999999999999988765
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=8.4e-16 Score=179.44 Aligned_cols=146 Identities=24% Similarity=0.299 Sum_probs=123.5
Q ss_pred EEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccc
Q 041248 502 VCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVK 579 (813)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 579 (813)
.|.+.++..+|.. -...++.|++++|.++.++ .+..+++|++|+++ ++.+..+++++|.++++|++|+|++| .
T Consensus 37 ~c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls~N---~ 111 (635)
T 4g8a_A 37 QCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN---P 111 (635)
T ss_dssp ECTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC---C
T ss_pred ECCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEccCC---c
Confidence 3445567777752 2357999999999999986 37899999999999 66789999988999999999999999 8
Q ss_pred ccccCc-cccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccc--cchhhhcCCCCCceeeccccccCCC
Q 041248 580 VLKLPF-GMSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNK--IPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 580 ~~~lp~-~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
++.+|. .+.+|.+|++|++++|.++.+|.. ++++++|++|++++|. +.. +|.. ++.+++|++|++++|.+.++
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcccccc
Confidence 999875 589999999999999999999875 8999999999999994 544 4665 88999999999998876543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=4.4e-16 Score=173.54 Aligned_cols=241 Identities=17% Similarity=0.187 Sum_probs=192.7
Q ss_pred eeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEee
Q 041248 520 VRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDI 598 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l 598 (813)
...++..+..+..+|. .-.++++.|+++ ++.+..+++..|..+++|++|+|++| .++.++ ..+.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~~iP~-~~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n---~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ-GIPSNTRYLNLM-ENNIQMIQADTFRHLHHLEVLQLGRN---SIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSSCCS-CCCTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcCccCC-CCCCCccEEECc-CCcCceECHHHcCCCCCCCEEECCCC---ccCCcChhhccCcccCCEEEC
Confidence 4567777777777764 223789999999 66788887777999999999999999 888775 67999999999999
Q ss_pred cCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeecccccc-CCCCCCCccccccCCccchhHHhhc
Q 041248 599 SHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGF-ENSEEPSEDSVLIGGGEVLVHELLG 676 (813)
Q Consensus 599 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 676 (813)
++|.++.+|.. +..+++|++|++++| .+..+|...+.++++|++|+++.+.. ..+ ....+.+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i---------------~~~~~~~ 194 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYI---------------SEGAFEG 194 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEE---------------CTTTTTT
T ss_pred CCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCcccc---------------ChhhccC
Confidence 99999999876 888999999999999 57888887799999999999996432 221 1234778
Q ss_pred CCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCC
Q 041248 677 LRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKR 756 (813)
Q Consensus 677 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 756 (813)
+++|+.|+++.|.+..++. ...+++|+.|+++++ .+..+....+..+++|+.|++++ +.+..+.+..+.
T Consensus 195 l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~----- 263 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDMPN----LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFD----- 263 (452)
T ss_dssp CTTCCEEECTTSCCSSCCC----CTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTT-SCCCEECTTTTT-----
T ss_pred CCCCCEEECCCCccccccc----ccccccccEEECcCC-cCcccCcccccCccCCCEEEeCC-CcCceECHHHhc-----
Confidence 9999999999888776543 233468999999996 45555445688999999999998 456655444443
Q ss_pred CCcccccCcceEeeccCcCCCccc--chhcCCCCceEeeecCc
Q 041248 757 SEPFVFRSLHRVTMERCHKLKDLT--FLVCAPSLKSLSLYGCN 797 (813)
Q Consensus 757 ~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 797 (813)
.+++|+.|+|++| .++.+| .+..+++|+.|++++++
T Consensus 264 ----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 ----GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ----TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ----CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 7899999999997 477777 36789999999999876
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.6e-16 Score=178.23 Aligned_cols=232 Identities=17% Similarity=0.152 Sum_probs=133.7
Q ss_pred cceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCE
Q 041248 518 ENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQL 595 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~ 595 (813)
++++.|++++|.+..++ .+..+++|++|+++ ++.+..+++ |..+++|++|+|++| .++.+|.. ++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~--l~~l~~L~~L~Ls~N---~l~~l~~~----~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LESLSTLRTLDLNNN---YVQELLVG----PSIET 103 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECT-TSCCEEEEE--CTTCTTCCEEECCSS---EEEEEEEC----TTCCE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEee-CCCCCCCcc--cccCCCCCEEEecCC---cCCCCCCC----CCcCE
Confidence 35677777777666653 35667777777776 444544444 666777777777777 66655522 66777
Q ss_pred EeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhh
Q 041248 596 LDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELL 675 (813)
Q Consensus 596 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 675 (813)
|++++|.+..+|.. .+++|++|++++|. +..+++..++.+++|++|++++|.+.+.. +..+.
T Consensus 104 L~L~~N~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------------~~~l~ 165 (487)
T 3oja_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVN---------------FAELA 165 (487)
T ss_dssp EECCSSCCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEE---------------GGGGG
T ss_pred EECcCCcCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcC---------------hHHHh
Confidence 77777777666543 45667777777763 44443333666777777777766554321 12332
Q ss_pred -cCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCC
Q 041248 676 -GLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAP 754 (813)
Q Consensus 676 -~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 754 (813)
.+++|+.|+++.|.+...+... .+++|+.|+|+++ .++.++. .+..+++|+.|++++ +.+..+ +.+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~L~~L~Ls~-N~l~~l-p~~----- 232 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRN-NKLVLI-EKA----- 232 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSS-CCCEECG-GGGGGTTCSEEECTT-SCCCEE-CTT-----
T ss_pred hhCCcccEEecCCCccccccccc----cCCCCCEEECCCC-CCCCCCH-hHcCCCCccEEEecC-CcCccc-chh-----
Confidence 5667777777666654442221 2346777777664 3344433 355666777777766 334432 111
Q ss_pred CCCCcccccCcceEeeccCcCC-Cccc-chhcCCCCceEeee
Q 041248 755 KRSEPFVFRSLHRVTMERCHKL-KDLT-FLVCAPSLKSLSLY 794 (813)
Q Consensus 755 ~~~~~~~l~~L~~L~l~~c~~l-~~l~-~l~~l~~L~~L~l~ 794 (813)
...+++|+.|++++|+.. ..+| ++..+++|+.|+++
T Consensus 233 ----l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 233 ----LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ----CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ----hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 125667777777766533 2343 44556666655554
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=3.9e-17 Score=183.13 Aligned_cols=219 Identities=14% Similarity=0.104 Sum_probs=171.1
Q ss_pred CCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCC
Q 041248 537 PTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNL 616 (813)
Q Consensus 537 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L 616 (813)
..+++|++|+++ ++.+..+++..|..+++|++|+|++| .++..++ ++.+++|++|+|++|.++.+|.. ++|
T Consensus 31 ~~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L 101 (487)
T 3oja_A 31 QSAWNVKELDLS-GNPLSQISAADLAPFTKLELLNLSSN---VLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSI 101 (487)
T ss_dssp TTGGGCCEEECC-SSCCCCCCGGGGTTCTTCCEEECTTS---CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTC
T ss_pred ccCCCccEEEee-CCcCCCCCHHHHhCCCCCCEEEeeCC---CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCc
Confidence 456799999999 56788888777999999999999999 7877664 99999999999999999988743 899
Q ss_pred cEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhh
Q 041248 617 KCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFF 696 (813)
Q Consensus 617 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 696 (813)
++|++++| .+..+|.. .+++|++|++++|.+.+.. ...++++++|+.|+++.|.+......
T Consensus 102 ~~L~L~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~~~---------------~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 102 ETLHAANN-NISRVSCS---RGQGKKNIYLANNKITMLR---------------DLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp CEEECCSS-CCCCEEEC---CCSSCEEEECCSSCCCSGG---------------GBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred CEEECcCC-cCCCCCcc---ccCCCCEEECCCCCCCCCC---------------chhhcCCCCCCEEECCCCCCCCcChH
Confidence 99999999 56777653 5789999999998877642 13467789999999998877543211
Q ss_pred hcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCC
Q 041248 697 LSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKL 776 (813)
Q Consensus 697 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 776 (813)
.....+++|+.|+|++|. ++.++ .+..+++|+.|++++ +.+..+.+. ...+++|+.|++++|. +
T Consensus 163 -~l~~~l~~L~~L~Ls~N~-l~~~~--~~~~l~~L~~L~Ls~-N~l~~~~~~----------~~~l~~L~~L~Ls~N~-l 226 (487)
T 3oja_A 163 -ELAASSDTLEHLNLQYNF-IYDVK--GQVVFAKLKTLDLSS-NKLAFMGPE----------FQSAAGVTWISLRNNK-L 226 (487)
T ss_dssp -GGGGGTTTCCEEECTTSC-CCEEE--CCCCCTTCCEEECCS-SCCCEECGG----------GGGGTTCSEEECTTSC-C
T ss_pred -HHhhhCCcccEEecCCCc-ccccc--ccccCCCCCEEECCC-CCCCCCCHh----------HcCCCCccEEEecCCc-C
Confidence 111134689999999964 44444 355689999999998 456654333 2478999999999975 6
Q ss_pred Cccc-chhcCCCCceEeeecCchh
Q 041248 777 KDLT-FLVCAPSLKSLSLYGCNAM 799 (813)
Q Consensus 777 ~~l~-~l~~l~~L~~L~l~~c~~l 799 (813)
..+| .++.+++|+.|++++++-.
T Consensus 227 ~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 227 VLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEECTTCCCCTTCCEEECTTCCBC
T ss_pred cccchhhccCCCCCEEEcCCCCCc
Confidence 6777 5678899999999997654
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=1.4e-15 Score=173.95 Aligned_cols=234 Identities=19% Similarity=0.182 Sum_probs=170.2
Q ss_pred ceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEee
Q 041248 519 NVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDI 598 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l 598 (813)
.++.|++++|.+..+|... .++|++|+++ ++.+..+|. .+++|++|+|++| .++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l-~~~L~~L~L~-~N~l~~lp~----~l~~L~~L~Ls~N---~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL-PAHITTLVIP-DNNLTSLPA----LPPELRTLEVSGN---QLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC-CTTCSEEEEC-SCCCSCCCC----CCTTCCEEEECSC---CCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhh-CCCCcEEEec-CCCCCCCCC----cCCCCCEEEcCCC---cCCcCCC---CCCCCCEEEC
Confidence 5789999999999887632 2899999999 556888887 4789999999999 8889986 7799999999
Q ss_pred cCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCC--Ccc-ccccCCccchhHHhh
Q 041248 599 SHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEP--SED-SVLIGGGEVLVHELL 675 (813)
Q Consensus 599 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~ 675 (813)
++|.++.+|. .+++|++|++++| .+..+|.. +++|++|++++|.+.+++.. .+. ..+.......+. .
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~--~ 178 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP--M 178 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--C
T ss_pred cCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc--c
Confidence 9999999997 6789999999999 57888874 48999999999988876420 000 000000111111 2
Q ss_pred cCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCC
Q 041248 676 GLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPK 755 (813)
Q Consensus 676 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 755 (813)
.+++|+.|+++.|.+..++.. .++|+.|++++| .++.++. .+++|+.|+++++ .++.+
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~~------~~~L~~L~L~~N-~l~~l~~----~~~~L~~L~Ls~N-~L~~l---------- 236 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNN-RLTSLPA----LPSGLKELIVSGN-RLTSL---------- 236 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSS-CCSSCCC----CCTTCCEEECCSS-CCSCC----------
T ss_pred cCCCCcEEECCCCCCCCCCCc------cchhhEEECcCC-cccccCC----CCCCCCEEEccCC-ccCcC----------
Confidence 346777777777766543321 246777777764 3333331 2467888888764 44432
Q ss_pred CCCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecCchhhhhh
Q 041248 756 RSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCNAMEEII 803 (813)
Q Consensus 756 ~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~ 803 (813)
+ ..+++|+.|++++| .++.+|. .+++|+.|++++| .++.+.
T Consensus 237 -p--~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 237 -P--VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp -C--CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCC
T ss_pred -C--CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCC
Confidence 1 26789999999997 5788887 6899999999998 455553
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=5e-16 Score=163.34 Aligned_cols=205 Identities=17% Similarity=0.179 Sum_probs=154.4
Q ss_pred ccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccc
Q 041248 528 NQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELP 607 (813)
Q Consensus 528 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp 607 (813)
+.+........+++|+.|+++ ++.+..++. +..+++|++|++++| .+..+|. +..+++|++|++++|.++.+|
T Consensus 29 ~~~~~~~~~~~l~~L~~L~l~-~~~i~~l~~--~~~l~~L~~L~L~~n---~i~~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 29 SNVTDTVTQADLDGITTLSAF-GTGVTTIEG--VQYLNNLIGLELKDN---QITDLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp SSTTSEECHHHHHTCCEEECT-TSCCCCCTT--GGGCTTCCEEECCSS---CCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred CCcCceecHHHcCCcCEEEee-CCCccCchh--hhccCCCCEEEccCC---cCCCChh-HccCCCCCEEEccCCcCCCch
Confidence 333333344567899999999 456777763 788999999999999 8888886 999999999999999999886
Q ss_pred hhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEE
Q 041248 608 EELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTL 687 (813)
Q Consensus 608 ~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 687 (813)
.+..+++|++|++++| .+..+|. +..+++|++|++++|.+.+.+ .+..+++|+.|+++.
T Consensus 102 -~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-----------------~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITNIS-----------------PLAGLTNLQYLSIGN 160 (308)
T ss_dssp -GGTTCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCCG-----------------GGGGCTTCCEEECCS
T ss_pred -hhcCCCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcCc-----------------cccCCCCccEEEccC
Confidence 6889999999999999 5777876 899999999999988776542 277888999999988
Q ss_pred cchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcce
Q 041248 688 RSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHR 767 (813)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 767 (813)
|....+.. ...+++|+.|+++++ .++.++ .+..+++|+.|+++++ .+..+. . ...+++|+.
T Consensus 161 n~l~~~~~----l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~N-~l~~~~--~---------l~~l~~L~~ 221 (308)
T 1h6u_A 161 AQVSDLTP----LANLSKLTTLKADDN-KISDIS--PLASLPNLIEVHLKNN-QISDVS--P---------LANTSNLFI 221 (308)
T ss_dssp SCCCCCGG----GTTCTTCCEEECCSS-CCCCCG--GGGGCTTCCEEECTTS-CCCBCG--G---------GTTCTTCCE
T ss_pred CcCCCChh----hcCCCCCCEEECCCC-ccCcCh--hhcCCCCCCEEEccCC-ccCccc--c---------ccCCCCCCE
Confidence 87765444 223457888888875 344444 2667788888888874 344321 1 236788888
Q ss_pred EeeccCcCCCccc
Q 041248 768 VTMERCHKLKDLT 780 (813)
Q Consensus 768 L~l~~c~~l~~l~ 780 (813)
|++++|+ +...|
T Consensus 222 L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 222 VTLTNQT-ITNQP 233 (308)
T ss_dssp EEEEEEE-EECCC
T ss_pred EEccCCe-eecCC
Confidence 8888865 44444
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=5.8e-16 Score=171.92 Aligned_cols=242 Identities=17% Similarity=0.225 Sum_probs=194.4
Q ss_pred eeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEee
Q 041248 520 VRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDI 598 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l 598 (813)
...++...+.+..+|.. -.++++.|+++ ++.+..++...|.++++|++|+|++| .+..++ ..+.++++|++|+|
T Consensus 45 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n---~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG-ISTNTRLLNLH-ENQIQIIKVNSFKHLRHLEILQLSRN---HIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSSCCSC-CCTTCSEEECC-SCCCCEECTTTTSSCSSCCEEECCSS---CCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCcCCCC-CCCCCcEEEcc-CCcCCeeCHHHhhCCCCCCEEECCCC---cCCccChhhccCCccCCEEEC
Confidence 45677777778777652 34789999999 66788888777999999999999999 888775 67899999999999
Q ss_pred cCCCCcccch-hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcC
Q 041248 599 SHAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGL 677 (813)
Q Consensus 599 ~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 677 (813)
++|.++.+|. .+..+++|++|++++| .+..+|...+.++++|++|++.++..... .....+.++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~--------------i~~~~~~~l 184 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSY--------------ISEGAFEGL 184 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE--------------ECTTTTTTC
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcce--------------eCcchhhcc
Confidence 9999999987 4899999999999999 57888887799999999999997432211 112347889
Q ss_pred CCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCC
Q 041248 678 RYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRS 757 (813)
Q Consensus 678 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 757 (813)
++|+.|+++.|.+..++. ...+++|+.|+|+++ .++.+....+..+++|+.|++++ +.++.+.+..+.
T Consensus 185 ~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~------ 252 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIPN----LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFD------ 252 (440)
T ss_dssp SSCCEEECTTSCCSSCCC----CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-CCCCEECTTSST------
T ss_pred cccCeecCCCCcCccccc----cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCC-CceeEEChhhhc------
Confidence 999999999888776553 233558999999996 55556555788999999999998 456655444443
Q ss_pred CcccccCcceEeeccCcCCCccc--chhcCCCCceEeeecCc
Q 041248 758 EPFVFRSLHRVTMERCHKLKDLT--FLVCAPSLKSLSLYGCN 797 (813)
Q Consensus 758 ~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 797 (813)
.+++|+.|+|++| .++.+| .+..+++|+.|++++++
T Consensus 253 ---~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 ---NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ---TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ---CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 7899999999997 477777 36789999999998876
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=5.1e-16 Score=163.31 Aligned_cols=192 Identities=15% Similarity=0.207 Sum_probs=160.5
Q ss_pred ccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCC
Q 041248 514 VEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSL 593 (813)
Q Consensus 514 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L 593 (813)
....+.++.|++.++.+..++.+..+++|++|+++ ++.+..++. +..+++|++|++++| .++.+| .+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~-~n~i~~~~~--~~~l~~L~~L~L~~n---~l~~~~-~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELK-DNQITDLAP--LKNLTKITELELSGN---PLKNVS-AIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCCSCCEEECCSC---CCSCCG-GGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEcc-CCcCCCChh--HccCCCCCEEEccCC---cCCCch-hhcCCCCC
Confidence 34466899999999999988888899999999999 556778776 889999999999999 788876 78999999
Q ss_pred CEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHH
Q 041248 594 QLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHE 673 (813)
Q Consensus 594 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (813)
++|++++|.++.+|. +..+++|++|++++| .+..+|. ++.+++|++|++++|.+.+++ .
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-----------------~ 168 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDLT-----------------P 168 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCG-----------------G
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCCh-----------------h
Confidence 999999999999875 899999999999999 5777876 889999999999988776542 2
Q ss_pred hhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccC
Q 041248 674 LLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAV 740 (813)
Q Consensus 674 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 740 (813)
+..+++|+.|+++.|....+.. ...+++|+.|++++| .+..+. .+..+++|+.|+++++.
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCe
Confidence 7889999999999888766554 233568999999986 444444 37788999999999853
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1.1e-15 Score=158.25 Aligned_cols=143 Identities=24% Similarity=0.277 Sum_probs=88.1
Q ss_pred cCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccc
Q 041248 504 SGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVL 581 (813)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 581 (813)
.+..+..+|.. -.+.++.|++++|.+..++ .+..+++|++|+++ ++.+..++...|..+++|++|++++| .++
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n---~l~ 89 (276)
T 2z62_A 15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN---PIQ 89 (276)
T ss_dssp TTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTC---CCC
T ss_pred cCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccCCcCCCEEECCCC---ccC
Confidence 33344444432 1245677777777666654 35666777777776 44566666555666777777777777 565
Q ss_pred ccC-ccccCCCCCCEEeecCCCCcccch-hhcCCCCCcEEeccCcccccc--cchhhhcCCCCCceeeccccccCC
Q 041248 582 KLP-FGMSKLGSLQLLDISHAGIRELPE-ELKLLVNLKCLNLRWTRMLNK--IPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 582 ~lp-~~i~~L~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
.++ ..+.++++|++|++++|.+..++. .+..+++|++|++++|. +.. +|.. ++.+++|++|++++|++.+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCc
Confidence 554 456667777777777776666654 46666777777777663 443 4554 6667777777776665544
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=6e-16 Score=159.80 Aligned_cols=133 Identities=21% Similarity=0.319 Sum_probs=95.4
Q ss_pred cCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCcc-ccCCCCC
Q 041248 515 EGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFG-MSKLGSL 593 (813)
Q Consensus 515 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~-i~~L~~L 593 (813)
...+.++.|.+.++.+..++.+..+++|++|+++ ++.+..++ .+..+++|++|++++| .++.+|.. ++++++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~-~n~l~~~~--~l~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALG-GNKLHDIS--ALKELTNLTYLILTGN---QLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECT-TSCCCCCG--GGTTCTTCCEEECTTS---CCCCCCTTTTTTCTTC
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECC-CCCCCCch--hhcCCCCCCEEECCCC---ccCccChhHhcCCcCC
Confidence 3445677788877777777777777888888887 44455554 2677778888888887 67666543 5777888
Q ss_pred CEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCC
Q 041248 594 QLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 594 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
++|++++|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++++|.+.+.
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 8888888877777655 577778888888777 46667666567778888888877766554
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.9e-15 Score=155.81 Aligned_cols=198 Identities=20% Similarity=0.248 Sum_probs=140.7
Q ss_pred ceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCcc-ccCCCCCCEEe
Q 041248 519 NVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFG-MSKLGSLQLLD 597 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~-i~~L~~L~~L~ 597 (813)
..+.++++++.+..+|.. -.++++.|+++ ++.+..++...|..+++|++|++++| .++.+|.. +.++++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n---~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IPADTKKLDLQ-SNKLSSLPSKAFHRLTKLRLLYLNDN---KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CCTTCSEEECC-SSCCSCCCTTSSSSCTTCCEEECCSS---CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCC-CCCCCCEEECc-CCCCCeeCHHHhcCCCCCCEEECCCC---ccCeeChhhhcCCCCCCEEE
Confidence 356788888888777642 23678888888 55677777766888888888888888 77777655 47788888888
Q ss_pred ecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhc
Q 041248 598 ISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLG 676 (813)
Q Consensus 598 l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 676 (813)
+++|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++++|.+..++. ..+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------~~~~~ 155 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPK---------------GVFDK 155 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------TTTTT
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCH---------------hHccC
Confidence 888888887754 577888888888888 4677776657888888888888777665431 22445
Q ss_pred CCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCC
Q 041248 677 LRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKR 756 (813)
Q Consensus 677 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 756 (813)
+++|+.|+++ ++ .++.++...+..+++|+.|+++++ .++.+....+
T Consensus 156 l~~L~~L~L~--------------------------~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~------ 201 (270)
T 2o6q_A 156 LTSLKELRLY--------------------------NN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAF------ 201 (270)
T ss_dssp CTTCCEEECC--------------------------SS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT------
T ss_pred CcccceeEec--------------------------CC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHh------
Confidence 5555555554 32 233333334777899999999984 5554433322
Q ss_pred CCcccccCcceEeeccCc
Q 041248 757 SEPFVFRSLHRVTMERCH 774 (813)
Q Consensus 757 ~~~~~l~~L~~L~l~~c~ 774 (813)
..+++|+.|++.+++
T Consensus 202 ---~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 202 ---DSLEKLKMLQLQENP 216 (270)
T ss_dssp ---TTCTTCCEEECCSSC
T ss_pred ---ccccCCCEEEecCCC
Confidence 368999999999866
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.4e-15 Score=156.88 Aligned_cols=171 Identities=23% Similarity=0.386 Sum_probs=139.7
Q ss_pred EEEEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCc
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGH 577 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 577 (813)
.+.+.+..+..+|... ...++.|++++|.+..++. +..+++|++|+++ ++.+..++...|..+++|++|++++|
T Consensus 20 ~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n-- 95 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDN-- 95 (270)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECC-SSCCSCCCTTTTSSCTTCCEEECCSS--
T ss_pred EEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECC-CCccCeeChhhhcCCCCCCEEECCCC--
Confidence 3445555666666532 3579999999999988763 7889999999999 66788999888899999999999999
Q ss_pred ccccccCc-cccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCC
Q 041248 578 VKVLKLPF-GMSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 578 ~~~~~lp~-~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
.++.+|. .+.++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.+.++.+++|++|++++|.+..++
T Consensus 96 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 96 -KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp -CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred -cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 8888874 568899999999999999988765 789999999999999 578888877899999999999998877654
Q ss_pred CCCccccccCCccchhHHhhcCCCCcEEEEEEcchh
Q 041248 656 EPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYD 691 (813)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 691 (813)
. ..+..+++|+.|+++.|.+.
T Consensus 174 ~---------------~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 174 E---------------GAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp T---------------TTTTTCTTCCEEECCSSCCS
T ss_pred h---------------hHhccCCCcCEEECCCCcCC
Confidence 2 23566777777777655443
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=2.3e-15 Score=161.54 Aligned_cols=236 Identities=17% Similarity=0.131 Sum_probs=135.7
Q ss_pred EecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccc-cccC-ccccCCCCCCE-Eeec
Q 041248 523 LSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKV-LKLP-FGMSKLGSLQL-LDIS 599 (813)
Q Consensus 523 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~lp-~~i~~L~~L~~-L~l~ 599 (813)
+..+++.++.+|.. -.++++.|+++ ++.+..+|.+.|.++++|++|+|++| .+ +.+| ..+.++++|+. +.+.
T Consensus 14 v~C~~~~Lt~iP~~-l~~~l~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N---~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 14 FLCQESKVTEIPSD-LPRNAIELRFV-LTKLRVIQKGAFSGFGDLEKIEISQN---DVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEESTTCCSCCTT-CCTTCSEEEEE-SCCCSEECTTSSTTCTTCCEEEEECC---TTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEecCCCCCccCcC-cCCCCCEEEcc-CCcCCCcCHHHHcCCCCCCEEECcCC---CCCCccChhHhhcchhhhhhhccc
Confidence 33444444444321 12455566665 44455565555566666666666666 43 2333 23455555443 3344
Q ss_pred CCCCcccch-hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccc-cccCCCCCCCccccccCCccchhHHhhcC
Q 041248 600 HAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFA-IGFENSEEPSEDSVLIGGGEVLVHELLGL 677 (813)
Q Consensus 600 ~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 677 (813)
+|+++.+|. .+..+++|++|++++| .+..+|...+....++..|.+.. +.+..++ ...+..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~---------------~~~f~~~ 152 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE---------------RNSFVGL 152 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEEC---------------TTSSTTS
T ss_pred CCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccc---------------ccchhhc
Confidence 455555532 3555666666666655 34555443233444444554432 1222111 0112222
Q ss_pred -CCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCC
Q 041248 678 -RYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKR 756 (813)
Q Consensus 678 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 756 (813)
..|+.|+++.|.+..++..... ..+|+.|.+.+++.++.++...+..+++|+.|++++ +.++.+..
T Consensus 153 ~~~l~~L~L~~N~i~~i~~~~f~---~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~--------- 219 (350)
T 4ay9_X 153 SFESVILWLNKNGIQEIHNSAFN---GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPS--------- 219 (350)
T ss_dssp BSSCEEEECCSSCCCEECTTSST---TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCS---------
T ss_pred chhhhhhccccccccCCChhhcc---ccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccCh---------
Confidence 2355555555554433322111 237888888887888888866788999999999997 45664421
Q ss_pred CCcccccCcceEeeccCcCCCcccchhcCCCCceEeeec
Q 041248 757 SEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYG 795 (813)
Q Consensus 757 ~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~ 795 (813)
..+.+|+.|.+.+|..++.+|.+..+++|+.+++.+
T Consensus 220 ---~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 ---YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ---SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ---hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 257889999999999999999999999999999865
No 76
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=6.8e-15 Score=158.56 Aligned_cols=290 Identities=14% Similarity=0.116 Sum_probs=171.0
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc-----cCHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD-----LRLEKIQEDIG 232 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~ 232 (813)
+.|+||+.+++.|.+ +.. +++.|+|++|+|||||++++.+.. . . ..+|+.+... .+...++..+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 578999999999999 754 699999999999999999999876 2 2 2578887642 23444444444
Q ss_pred HHcC------------------CCCCc----c-----CCCCHHHHHHHHHHHhcCCcEEEEEecccCcc-----cccccc
Q 041248 233 KKIG------------------LVDDS----W-----KSKSVEEKALDIFRSLREKRFVLLLDDIWERV-----DLTKMG 280 (813)
Q Consensus 233 ~~l~------------------~~~~~----~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~~~ 280 (813)
+.+. ...+. . ......+....+.+... ++++||+||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 3321 00000 0 01234444444444322 49999999996422 222221
Q ss_pred cCCCCCCCCCcEEEEEcCcccccc----------cC-CC-CcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHH
Q 041248 281 IPLSGPKNTTSKVVFTTRFVDVCG----------SM-EA-DKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTV 348 (813)
Q Consensus 281 ~~l~~~~~~~s~ilvTtR~~~v~~----------~~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i 348 (813)
..+ .....+.++|+|+|...... .. +. ...+++.+|+.+++.+++...+.......+. ...|
T Consensus 162 ~~~-~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-----~~~i 235 (357)
T 2fna_A 162 AYA-YDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-----YEVV 235 (357)
T ss_dssp HHH-HHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----HHHH
T ss_pred HHH-HHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----HHHH
Confidence 111 11124678999998754211 11 11 2578999999999999998865311111111 1789
Q ss_pred HHHhCCcchHHHHHHHhhcCCCCHHHHHHHHHHHhchhhhccCchHHHHhHHH-Hhhc--CCChhhHHHHHhhhccCCCC
Q 041248 349 AKECGGLPLALITIGRAMAFKKTAEEWIHAIEVLRTSASEFAGLGEKVYRLLK-FSYD--SLQNETIRSCFLYCCLYPED 425 (813)
Q Consensus 349 ~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~~k~cfl~~~~fp~~ 425 (813)
++.|+|+|+++..++..+....+...|... +-.... ..+...+. +.++ .+++ ..+..+..++.-
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~g--- 302 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQ---TLEYAK------KLILKEFENFLHGREIARK-RYLNIMRTLSKC--- 302 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHH---HHHHHH------HHHHHHHHHHHTTCGGGHH-HHHHHHHHHTTC---
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHH---HHHHHH------HHHHHHHHHHhhccccccH-HHHHHHHHHHcC---
Confidence 999999999999998776432333334221 100000 01111111 1111 5777 788888888872
Q ss_pred ccccHHHHHHHHH-HcCCcccccccchHhhHHHHHHHHHHhcccceecCCcEE-EeHHHHHHH
Q 041248 426 YDILKWDLIDCWI-GEGFLEESDRFSAENQGYYIVGTLVHACLLEEVEDDKVK-MHDVVRDMA 486 (813)
Q Consensus 426 ~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~-mHdlv~~~a 486 (813)
. +...+....- ..|. .........+++.|++.+|+...+ ..|+ -|++++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp B--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred C--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 1 3333332210 1121 012345667899999999998754 4565 588988764
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=5.9e-15 Score=163.72 Aligned_cols=123 Identities=21% Similarity=0.317 Sum_probs=83.8
Q ss_pred cceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEe
Q 041248 518 ENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLD 597 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~ 597 (813)
+.++.|++++|.+..+|.+..+++|++|+++ ++.+..+|.. ..+|++|++++| .++.+| .++++++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~-~N~l~~lp~~----~~~L~~L~L~~n---~l~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVD-NNSLKKLPDL----PPSLEFIAAGNN---QLEELP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECC-SSCCSCCCCC----CTTCCEEECCSS---CCSSCC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECC-CCcCcccCCC----cccccEEECcCC---cCCcCc-cccCCCCCCEEE
Confidence 4667777777777666666677777777777 3445555543 346777777777 666666 577777777777
Q ss_pred ecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCC
Q 041248 598 ISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 598 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
+++|.++.+|... .+|++|++++| .+..+|. ++.+++|++|++++|.+.+++
T Consensus 202 l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 202 ADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCC
T ss_pred CCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCccc
Confidence 7777777666532 47777777777 4567774 777888888888877766544
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=1.2e-15 Score=158.72 Aligned_cols=196 Identities=17% Similarity=0.119 Sum_probs=127.2
Q ss_pred ccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEE
Q 041248 517 WENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLL 596 (813)
Q Consensus 517 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L 596 (813)
.++++.+++.++.+..+|.. -.++++.|+++ .+.+..++...|..+++|++|++++| .++.+|.. +.+++|++|
T Consensus 9 l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPD-LPKDTTILHLS-ENLLYTFSLATLMPYTRLTQLNLDRA---ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCSSCCSC-CCTTCCEEECT-TSCCSEEEGGGGTTCTTCCEEECTTS---CCCEEECC-SCCTTCCEE
T ss_pred cCCccEEECCCCCCCcCCCC-CCCCCCEEEcC-CCcCCccCHHHhhcCCCCCEEECCCC---ccCcccCC-CCCCcCCEE
Confidence 34567777777777766532 23677777777 45566666666777777888888777 67766643 677778888
Q ss_pred eecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhc
Q 041248 597 DISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLG 676 (813)
Q Consensus 597 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 676 (813)
++++|.++.+|..+..+++|++|++++| .+..+|.+.+..+++|++|++++|.+..++. ..+..
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~ 146 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPP---------------GLLTP 146 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCT---------------TTTTT
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccCh---------------hhccc
Confidence 8887777777777777777888888777 4666765557777778888877777665431 23456
Q ss_pred CCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecc
Q 041248 677 LRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRS 738 (813)
Q Consensus 677 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~ 738 (813)
+++|+.|+++.|.+..++.. ....+++|+.|+++++ .++.++. .+....+|+.|++++
T Consensus 147 l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~L~~N-~l~~ip~-~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPAG--LLNGLENLDTLLLQEN-SLYTIPK-GFFGSHLLPFAFLHG 204 (290)
T ss_dssp CTTCCEEECTTSCCSCCCTT--TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCCCSEEECCS
T ss_pred ccCCCEEECCCCcCCccCHH--HhcCcCCCCEEECCCC-cCCccCh-hhcccccCCeEEeCC
Confidence 67777777776665543321 1122346666777663 3444442 344455667776665
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=3.4e-15 Score=154.57 Aligned_cols=218 Identities=19% Similarity=0.172 Sum_probs=148.6
Q ss_pred EecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCc-cccCCCCCCEEeecCC
Q 041248 523 LSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPF-GMSKLGSLQLLDISHA 601 (813)
Q Consensus 523 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~-~i~~L~~L~~L~l~~~ 601 (813)
+......+..+|.. -.++|++|+++ ++.+..++...|.++++|++|++++| .++.++. .+.++++|++|++++|
T Consensus 12 ~~c~~~~l~~ip~~-l~~~l~~L~ls-~n~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFYKIPDN-LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCSSCCSS-SCTTCCEEECT-TCCCCEECTTTTTTCTTCSEEECTTC---CCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCccccCCC-CCCCccEEECC-CCcccccCHhHhccccCCcEEECCCC---cCCccCHHHccCCcCCCEEECCCC
Confidence 34444555555441 23579999999 56788888767899999999999999 7887764 7889999999999999
Q ss_pred CCcccc-hhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCC
Q 041248 602 GIRELP-EELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYL 680 (813)
Q Consensus 602 ~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 680 (813)
.++.+| ..+..+++|++|++++| .+..++...++.+++|++|++++|.+.... ....+..+++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------l~~~~~~l~~L 151 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFK--------------LPEYFSNLTNL 151 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCC--------------CCGGGGGCTTC
T ss_pred ccCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceec--------------CchhhccCCCC
Confidence 999877 56899999999999999 467776644899999999999988876532 12457888999
Q ss_pred cEEEEEEcchhhHHhhhcchhhhhcce----eeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCC
Q 041248 681 EVLELTLRSYDALQFFLSSNKLKSCIR----SLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKR 756 (813)
Q Consensus 681 ~~L~l~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 756 (813)
+.|+++.|....... .....+.+|+ .|+++++ .+..++...+ ...+|+.|+++++ .++.+....+
T Consensus 152 ~~L~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~------ 220 (276)
T 2z62_A 152 EHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAF-KEIRLKELALDTN-QLKSVPDGIF------ 220 (276)
T ss_dssp CEEECCSSCCCEECG--GGGHHHHTCTTCCEEEECCSS-CCCEECTTSS-CSCCEEEEECCSS-CCSCCCTTTT------
T ss_pred CEEECCCCCCCcCCH--HHhhhhhhccccceeeecCCC-cccccCcccc-CCCcccEEECCCC-ceeecCHhHh------
Confidence 999988776644321 1111122333 5666653 3333332222 2336777777663 3443322222
Q ss_pred CCcccccCcceEeeccCc
Q 041248 757 SEPFVFRSLHRVTMERCH 774 (813)
Q Consensus 757 ~~~~~l~~L~~L~l~~c~ 774 (813)
..+++|+.|++++++
T Consensus 221 ---~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 221 ---DRLTSLQKIWLHTNP 235 (276)
T ss_dssp ---TTCCSCCEEECCSSC
T ss_pred ---cccccccEEEccCCc
Confidence 256677777777543
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=4e-16 Score=166.75 Aligned_cols=251 Identities=15% Similarity=0.067 Sum_probs=155.1
Q ss_pred eeEEecccccccccccCCCC--CceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccc--cCccccCCCCCCE
Q 041248 520 VRRLSLMQNQIEILSEVPTC--PHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLK--LPFGMSKLGSLQL 595 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--lp~~i~~L~~L~~ 595 (813)
.+++++.++.+.. ..+..+ ++++.|++. ++.+...+.. +..+++|++|++++| .+.. +|..+..+++|++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~-~n~l~~~~~~-~~~~~~L~~L~L~~~---~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCP-RSFMDQPLAE-HFSPFRVQHMDLSNS---VIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECT-TCEECSCCCS-CCCCBCCCEEECTTC---EECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcC-Cccccccchh-hccCCCCCEEEccCC---CcCHHHHHHHHhhCCCCCE
Confidence 4566666655432 112233 677888887 4455555544 446788888888888 5542 6677788888888
Q ss_pred EeecCCCCc-ccchhhcCCCCCcEEeccCccccc--ccchhhhcCCCCCceeecccc-ccCCCCCCCccccccCCccchh
Q 041248 596 LDISHAGIR-ELPEELKLLVNLKCLNLRWTRMLN--KIPRLLISNSSWLRVLRMFAI-GFENSEEPSEDSVLIGGGEVLV 671 (813)
Q Consensus 596 L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 671 (813)
|++++|.+. ..|..+..+++|++|++++|..+. .+|.. +.++++|++|++++| .+.+ ....
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~--------------~~~~ 187 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE--------------KHVQ 187 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH--------------HHHH
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh--------------HHHH
Confidence 888888776 566778888888888888885454 35554 777888888888866 4321 1123
Q ss_pred HHhhcCC-CCcEEEEEEcch-hhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecc
Q 041248 672 HELLGLR-YLEVLELTLRSY-DALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDY 749 (813)
Q Consensus 672 ~~l~~L~-~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 749 (813)
..+..++ +|+.|+++.|.. -....+......+++|+.|++++|..++...+..+..+++|+.|++++|..+.......
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 4567788 888888887742 11111222223356888888888765544333457778888989888876433111111
Q ss_pred cccCCCCCCcccccCcceEeeccCcCCCcccchhcCCCCceEeeecCchhhhhh
Q 041248 750 TEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSLSLYGCNAMEEII 803 (813)
Q Consensus 750 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~ 803 (813)
...+++|+.|++++|-.-..+..+. .+|+.|++ +|+.++.+.
T Consensus 268 ---------l~~~~~L~~L~l~~~i~~~~~~~l~--~~l~~L~l-~~n~l~~~~ 309 (336)
T 2ast_B 268 ---------LGEIPTLKTLQVFGIVPDGTLQLLK--EALPHLQI-NCSHFTTIA 309 (336)
T ss_dssp ---------GGGCTTCCEEECTTSSCTTCHHHHH--HHSTTSEE-SCCCSCCTT
T ss_pred ---------HhcCCCCCEEeccCccCHHHHHHHH--hhCcceEE-ecccCcccc
Confidence 1368888999998881111122221 23444556 455565544
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.61 E-value=1.3e-14 Score=160.89 Aligned_cols=266 Identities=20% Similarity=0.232 Sum_probs=158.4
Q ss_pred EEEEcCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccc
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVK 579 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 579 (813)
.+...+..+..+|.. .++++.|++++|.+..+|.. +++|++|+++ ++.+..++.. .++|++|++++| .
T Consensus 75 ~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~-~n~l~~l~~~----~~~L~~L~L~~n---~ 142 (454)
T 1jl5_A 75 ELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVD-NNNLKALSDL----PPLLEYLGVSNN---Q 142 (454)
T ss_dssp EEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECC-SSCCSCCCSC----CTTCCEEECCSS---C
T ss_pred EEEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECC-CCccCcccCC----CCCCCEEECcCC---C
Confidence 344444455555542 35788888888888776643 4788888887 4456555532 267888888888 7
Q ss_pred ccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCC--
Q 041248 580 VLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEP-- 657 (813)
Q Consensus 580 ~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~-- 657 (813)
++.+| .++++++|++|++++|.++.+|..+ .+|++|++++| .+..+|. ++++++|++|++++|.+.+++..
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~ 215 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPL 215 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred CCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCCCCcC
Confidence 77777 5888888888888888888777543 47888888888 4666773 78888888888888877765421
Q ss_pred Ccc-ccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccc----------c---
Q 041248 658 SED-SVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHA----------T--- 723 (813)
Q Consensus 658 ~~~-~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~----------~--- 723 (813)
.+. ..+.......+..++.+++|+.|+++.|....++.. ..+|+.|+++++. +..++. +
T Consensus 216 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 216 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL------PPSLEALNVRDNY-LTDLPELPQSLTFLDVSENI 288 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC------CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred cccEEECcCCcCCcccccCCCCCCCEEECCCCcCCccccc------ccccCEEECCCCc-ccccCcccCcCCEEECcCCc
Confidence 111 011111111233477888888888887776544321 2366666666542 222210 0
Q ss_pred --ccc-cccccceeeecccC---------ccceeeecccccCCCCCCcccccCcceEeeccCcCCCcccchhcCCCCceE
Q 041248 724 --AFS-DLKHLNELCIRSAV---------ELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSL 791 (813)
Q Consensus 724 --~l~-~l~~L~~L~l~~~~---------~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L 791 (813)
.+. -+++|+.|+++++. .++.+........+. + ..+++|+.|++++|. ++.+|. .+++|+.|
T Consensus 289 l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l-p--~~~~~L~~L~L~~N~-l~~lp~--~l~~L~~L 362 (454)
T 1jl5_A 289 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-P--ALPPRLERLIASFNH-LAEVPE--LPQNLKQL 362 (454)
T ss_dssp CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-C--CCCTTCCEEECCSSC-CSCCCC--CCTTCCEE
T ss_pred cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccc-c--ccCCcCCEEECCCCc-cccccc--hhhhccEE
Confidence 000 11345555554421 222222222221121 1 135677777777763 566665 46778888
Q ss_pred eeecCc
Q 041248 792 SLYGCN 797 (813)
Q Consensus 792 ~l~~c~ 797 (813)
+++++.
T Consensus 363 ~L~~N~ 368 (454)
T 1jl5_A 363 HVEYNP 368 (454)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 887764
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.59 E-value=6.9e-15 Score=161.88 Aligned_cols=291 Identities=12% Similarity=0.059 Sum_probs=177.1
Q ss_pred CcccchhHHHHHHHHHH-hc------CCceEEEE--EcCCCCcHHHHHHHHHhhcccC--CCCCC-EEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCL-VE------ESVGIIGL--YGMGGVGKTTLLTHINNKFLES--PTSFD-CVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLa~~~~~~~~~~--~~~f~-~~~wv~~~~~~~~~ 225 (813)
+.|+||+.+++++.+++ .. .....+.| +|++|+||||||+.+++..... ...++ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57999999999999988 42 24567777 9999999999999999876210 01123 36788876777888
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc--CCcEEEEEecccCcc--------cccccccCCC--CCCC--CCc
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR--EKRFVLLLDDIWERV--------DLTKMGIPLS--GPKN--TTS 291 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~~~~l~--~~~~--~~s 291 (813)
.++..++.+++...+. ...+..+....+...+. +++++|||||++... .+..+...+. ...+ .+.
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999998764321 23345566666666664 689999999997532 2222212120 1112 445
Q ss_pred EEEEEcCcccccccC---------CCCcceEcCCCCHHHHHHHHHHhhC---CCccCCChhHHHHHHHHHHHhC------
Q 041248 292 KVVFTTRFVDVCGSM---------EADKKFQVACLSEEDAWELFRKKVG---EETLESDHDIVELAQTVAKECG------ 353 (813)
Q Consensus 292 ~ilvTtR~~~v~~~~---------~~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~------ 353 (813)
.+|+||+...+...+ .....+++++++.++++++|...+. ... ..+ .+....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~-~~~---~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT-VWE---PRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT-SCC---HHHHHHHHHHHCGGGTSC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC-CCC---hHHHHHHHHHHHHhccCC
Confidence 688888755432110 0122399999999999999976542 211 111 357788999999
Q ss_pred CcchHHHHHHHhhc------CC--CCHHHHHHHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhccCC--
Q 041248 354 GLPLALITIGRAMA------FK--KTAEEWIHAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLYP-- 423 (813)
Q Consensus 354 GlPLai~~~~~~l~------~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp-- 423 (813)
|.|..+..++.... .. -+...+........ . ...+.-++..||+ +.+.++..++.+.
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----------~-~~~~~~~l~~l~~-~~~~~l~aia~l~~~ 323 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-----------A-ASIQTHELEALSI-HELIILRLIAEATLG 323 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-----------c-cchHHHHHHcCCH-HHHHHHHHHHHHHhc
Confidence 99976655443211 10 12333332222110 0 2234456788998 7888888887643
Q ss_pred CCccccHHHHHHHHH--H---cCCcccccccchHhhHHHHHHHHHHhccccee
Q 041248 424 EDYDILKWDLIDCWI--G---EGFLEESDRFSAENQGYYIVGTLVHACLLEEV 471 (813)
Q Consensus 424 ~~~~i~~~~li~~w~--a---~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 471 (813)
.+..+....+...+. + .|. ..........+++.|+..+|+...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 324 GMEWINAGLLRQRYEDASLTMYNV-----KPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp TCSSBCHHHHHHHHHHHHHHHSCC-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHHhCCCEEee
Confidence 223455544444332 1 111 011234556789999999999764
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=5.3e-15 Score=149.52 Aligned_cols=211 Identities=18% Similarity=0.195 Sum_probs=162.0
Q ss_pred ccccccccchhhcCCCcccEEEeccCCcccccccCc-cccCCCCCCEEeecCCC-Ccccch-hhcCCCCCcEEeccCccc
Q 041248 550 NYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPF-GMSKLGSLQLLDISHAG-IRELPE-ELKLLVNLKCLNLRWTRM 626 (813)
Q Consensus 550 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~-~i~~L~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~l~~~~~ 626 (813)
|..+..+|. + ..+|++|++++| .++.+|. .+.++++|++|++++|. ++.+|. .+..+++|++|++++|+.
T Consensus 20 c~~l~~ip~--~--~~~l~~L~l~~n---~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 20 CKDIQRIPS--L--PPSTQTLKLIET---HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp ECSCSSCCC--C--CTTCCEEEEESC---CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred ccCccccCC--C--CCcccEEEEeCC---cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 444777776 2 348999999999 8988875 78899999999999996 999887 589999999999998447
Q ss_pred ccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCc---EEEEEEc-chhhHHhhhcchhh
Q 041248 627 LNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLE---VLELTLR-SYDALQFFLSSNKL 702 (813)
Q Consensus 627 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~---~L~l~~~-~~~~~~~~~~~~~~ 702 (813)
+..+|...+..+++|++|++++|.+.+++ .+..+++|+ .|+++.| ....++.. ....
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~~lp-----------------~~~~l~~L~~L~~L~l~~N~~l~~i~~~--~~~~ 153 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLKMFP-----------------DLTKVYSTDIFFILEITDNPYMTSIPVN--AFQG 153 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCCSCC-----------------CCTTCCBCCSEEEEEEESCTTCCEECTT--TTTT
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCcccc-----------------ccccccccccccEEECCCCcchhhcCcc--cccc
Confidence 88898766899999999999999887654 144555555 9999988 66544321 1233
Q ss_pred hhcce-eeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccc-cCcceEeeccCcCCCccc
Q 041248 703 KSCIR-SLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVF-RSLHRVTMERCHKLKDLT 780 (813)
Q Consensus 703 ~~~L~-~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~ 780 (813)
+++|+ .|+++++ .++.++...+.. ++|+.|+++++..++.+.+..+. .+ ++|+.|+++++ .++.+|
T Consensus 154 l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~---------~l~~~L~~L~l~~N-~l~~l~ 221 (239)
T 2xwt_C 154 LCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFG---------GVYSGPSLLDVSQT-SVTALP 221 (239)
T ss_dssp TBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTT---------TCSBCCSEEECTTC-CCCCCC
T ss_pred hhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhh---------ccccCCcEEECCCC-ccccCC
Confidence 56899 9999885 455666544555 79999999986567766444443 67 89999999996 477887
Q ss_pred chhcCCCCceEeeecCchh
Q 041248 781 FLVCAPSLKSLSLYGCNAM 799 (813)
Q Consensus 781 ~l~~l~~L~~L~l~~c~~l 799 (813)
.. .+++|+.|+++++..|
T Consensus 222 ~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 222 SK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CT-TCTTCSEEECTTC---
T ss_pred hh-HhccCceeeccCccCC
Confidence 54 7999999999998764
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=8e-15 Score=152.56 Aligned_cols=189 Identities=23% Similarity=0.255 Sum_probs=155.0
Q ss_pred EEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHV 578 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (813)
+.+.+..+..+|... .+.++.|++++|.+..++ .+..+++|+.|+++ ++.+..++.. ..+++|++|++++|
T Consensus 15 l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~--~~l~~L~~L~Ls~N--- 87 (290)
T 1p9a_G 15 VNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQVD--GTLPVLGTLDLSHN--- 87 (290)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECT-TSCCCEEECC--SCCTTCCEEECCSS---
T ss_pred EECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECC-CCccCcccCC--CCCCcCCEEECCCC---
Confidence 344455666666432 368999999999998764 47889999999999 5668777763 78999999999999
Q ss_pred cccccCccccCCCCCCEEeecCCCCcccch-hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCC
Q 041248 579 KVLKLPFGMSKLGSLQLLDISHAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEP 657 (813)
Q Consensus 579 ~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 657 (813)
.++.+|..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..+|.+++..+++|++|++++|++..++.
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~- 165 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPA- 165 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-
T ss_pred cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCH-
Confidence 899999999999999999999999999984 5899999999999999 6788998878999999999999998887642
Q ss_pred CccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccC
Q 041248 658 SEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLG 715 (813)
Q Consensus 658 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 715 (813)
..+..+++|+.|+++.|.+..++..... ...|+.|.+.+++
T Consensus 166 --------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~---~~~L~~l~L~~Np 206 (290)
T 1p9a_G 166 --------------GLLNGLENLDTLLLQENSLYTIPKGFFG---SHLLPFAFLHGNP 206 (290)
T ss_dssp --------------TTTTTCTTCCEEECCSSCCCCCCTTTTT---TCCCSEEECCSCC
T ss_pred --------------HHhcCcCCCCEEECCCCcCCccChhhcc---cccCCeEEeCCCC
Confidence 3367889999999999888755543322 3478899998754
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=2.2e-15 Score=160.91 Aligned_cols=223 Identities=20% Similarity=0.174 Sum_probs=166.1
Q ss_pred ceeEEEeeeccccccccchhhcCC--CcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcc--cchhhcCCCCC
Q 041248 541 HLLTLFLDFNYKLEMITDGFFQCM--PSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRE--LPEELKLLVNL 616 (813)
Q Consensus 541 ~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~--lp~~~~~l~~L 616 (813)
.++.+++++ +.+. +..+..+ +++++|++++| .+...+..+..+++|++|++++|.+.. +|..+..+++|
T Consensus 48 ~~~~l~l~~-~~~~---~~~~~~~~~~~l~~L~l~~n---~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTG-KNLH---PDVTGRLLSQGVIAFRCPRS---FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTT-CBCC---HHHHHHHHHTTCSEEECTTC---EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeecccc-ccCC---HHHHHhhhhccceEEEcCCc---cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 477888884 3332 4446667 89999999999 888777778899999999999998874 88889999999
Q ss_pred cEEeccCcccccccchhhhcCCCCCceeecccc-ccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEc-chhhHH
Q 041248 617 KCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAI-GFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLR-SYDALQ 694 (813)
Q Consensus 617 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~ 694 (813)
++|++++|......|.. ++++++|++|++++| .+.. ......+.++++|+.|+++.| .....
T Consensus 121 ~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~--------------~~l~~~~~~~~~L~~L~l~~~~~l~~~- 184 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE--------------FALQTLLSSCSRLDELNLSWCFDFTEK- 184 (336)
T ss_dssp SEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCH--------------HHHHHHHHHCTTCCEEECCCCTTCCHH-
T ss_pred CEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCH--------------HHHHHHHhcCCCCCEEcCCCCCCcChH-
Confidence 99999999533356665 899999999999976 2321 113344788999999999988 65431
Q ss_pred hhhcchhhhh-cceeeeecccC-Ccc--cccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEee
Q 041248 695 FFLSSNKLKS-CIRSLFLNKLG-GTK--SIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTM 770 (813)
Q Consensus 695 ~~~~~~~~~~-~L~~L~l~~~~-~~~--~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l 770 (813)
.+......++ +|+.|++++|. .++ .++ ..+..+++|+.|++++|..+....+..+ ..+++|+.|++
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l---------~~l~~L~~L~l 254 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEF---------FQLNYLQHLSL 254 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGG---------GGCTTCCEEEC
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHH---------hCCCCCCEeeC
Confidence 1222233456 89999999975 333 222 1356789999999999875543223332 37899999999
Q ss_pred ccCcCCCc--ccchhcCCCCceEeeecC
Q 041248 771 ERCHKLKD--LTFLVCAPSLKSLSLYGC 796 (813)
Q Consensus 771 ~~c~~l~~--l~~l~~l~~L~~L~l~~c 796 (813)
++|..+.. +..+..+++|+.|++++|
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99975433 235778999999999999
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=1.3e-15 Score=160.56 Aligned_cols=221 Identities=19% Similarity=0.178 Sum_probs=157.7
Q ss_pred eeEEeccccccccc--ccC-C-------CCCceeEEEeeeccccc-cccchhh-cCCCcccEEEeccCCcccccccCccc
Q 041248 520 VRRLSLMQNQIEIL--SEV-P-------TCPHLLTLFLDFNYKLE-MITDGFF-QCMPSLKVLKMSNCGHVKVLKLPFGM 587 (813)
Q Consensus 520 ~~~l~l~~~~~~~l--~~~-~-------~~~~L~~L~l~~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~~~~lp~~i 587 (813)
++.|++.+|.+... +.. . .+++|++|++++| .+. .+|..+| ..+++|++|++++| .++.+|..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~ 140 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV---SWATRDAWL 140 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC---BCSSSSSHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC---CCcchhHHH
Confidence 67777777777542 221 1 5889999999954 454 5666643 88999999999999 888778777
Q ss_pred cCC-----CCCCEEeecCCCCcccc-hhhcCCCCCcEEeccCcccccc--cchhhh--cCCCCCceeeccccccCCCCCC
Q 041248 588 SKL-----GSLQLLDISHAGIRELP-EELKLLVNLKCLNLRWTRMLNK--IPRLLI--SNSSWLRVLRMFAIGFENSEEP 657 (813)
Q Consensus 588 ~~L-----~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~--lp~~~i--~~L~~L~~L~l~~~~~~~~~~~ 657 (813)
+.+ ++|++|++++|.+..+| ..++.+++|++|++++|..... +|.. + +.+++|++|++++|++..++
T Consensus 141 ~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-- 217 (312)
T 1wwl_A 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGMETPS-- 217 (312)
T ss_dssp HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCCCCHH--
T ss_pred HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcCcchH--
Confidence 777 89999999999998887 6789999999999999853333 3443 4 78999999999988765421
Q ss_pred CccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeec
Q 041248 658 SEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIR 737 (813)
Q Consensus 658 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~ 737 (813)
.....-+..+++|+.|+++.|......... ....+++|+.|+++++ .++.++. .+. ++|+.|+++
T Consensus 218 ----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~Ls~N-~l~~ip~-~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 218 ----------GVCSALAAARVQLQGLDLSHNSLRDAAGAP-SCDWPSQLNSLNLSFT-GLKQVPK-GLP--AKLSVLDLS 282 (312)
T ss_dssp ----------HHHHHHHHTTCCCSEEECTTSCCCSSCCCS-CCCCCTTCCEEECTTS-CCSSCCS-SCC--SEEEEEECC
T ss_pred ----------HHHHHHHhcCCCCCEEECCCCcCCcccchh-hhhhcCCCCEEECCCC-ccChhhh-hcc--CCceEEECC
Confidence 111123467889999999888765433111 1122458999999985 4455553 233 789999999
Q ss_pred ccCccceeeecccccCCCCCCcccccCcceEeeccCc
Q 041248 738 SAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCH 774 (813)
Q Consensus 738 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 774 (813)
+ +.++.+ +. ...+++|+.|++++++
T Consensus 283 ~-N~l~~~-p~----------~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 283 Y-NRLDRN-PS----------PDELPQVGNLSLKGNP 307 (312)
T ss_dssp S-SCCCSC-CC----------TTTSCEEEEEECTTCT
T ss_pred C-CCCCCC-hh----------HhhCCCCCEEeccCCC
Confidence 7 455543 22 2378999999999875
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=1.7e-14 Score=148.90 Aligned_cols=170 Identities=24% Similarity=0.401 Sum_probs=143.6
Q ss_pred EEEcCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKV 580 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 580 (813)
+...+..+..++.....+.++.|++++|.+..++.+..+++|++|+++ ++.+..++...|..+++|++|++++| .+
T Consensus 46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n---~l 121 (272)
T 3rfs_A 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVLVEN---QL 121 (272)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS---CC
T ss_pred eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECC-CCccCccChhHhcCCcCCCEEECCCC---cC
Confidence 334444556667777788999999999999998888999999999999 56788888888899999999999999 88
Q ss_pred cccCcc-ccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCC
Q 041248 581 LKLPFG-MSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPS 658 (813)
Q Consensus 581 ~~lp~~-i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 658 (813)
+.+|.. ++++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++++|.+.+.+.
T Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-- 198 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-- 198 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--
T ss_pred CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCH--
Confidence 888654 78999999999999999998876 589999999999999 5778887767999999999999998876542
Q ss_pred ccccccCCccchhHHhhcCCCCcEEEEEEcch
Q 041248 659 EDSVLIGGGEVLVHELLGLRYLEVLELTLRSY 690 (813)
Q Consensus 659 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 690 (813)
..+..+++|+.|+++.|..
T Consensus 199 -------------~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 199 -------------GVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp -------------TTTTTCTTCCEEECCSSCB
T ss_pred -------------HHHhCCcCCCEEEccCCCc
Confidence 3367788888888876653
No 88
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.56 E-value=4e-15 Score=129.09 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=73.5
Q ss_pred eccChhhhhhhHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHHHHHHH
Q 041248 7 ITCDGAFFNRCLDCFLGKVANTSKLQDNLVALETELGKLIAAKNDVMMRVVNAERQQ-LRTLDQVQVWLSRVEAVETEAD 85 (813)
Q Consensus 7 ~~~~~l~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~-~~~~~~v~~Wl~~v~~~~~~~e 85 (813)
|+++.+ ++||++++.+|+.++.++++++++|+++|+.|++||.| |+.+. ...+++|+.|+++||+++||+|
T Consensus 1 a~v~~l-l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 1 AAISNL-IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp CTTCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 467888 99999999999999999999999999999999999988 55542 2247899999999999999999
Q ss_pred HHHHhcccccc
Q 041248 86 ELKRHGSQEID 96 (813)
Q Consensus 86 d~ld~~~~~~~ 96 (813)
||||+|.++..
T Consensus 73 D~iD~f~~~~~ 83 (115)
T 3qfl_A 73 DVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=4.8e-14 Score=143.60 Aligned_cols=169 Identities=22% Similarity=0.310 Sum_probs=124.7
Q ss_pred EEEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHV 578 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (813)
+.+.+..+..+|... ...++.|++++|.+..++. +..+++|++|+++ ++.+..+++..|..+++|++|++++|
T Consensus 19 l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n--- 93 (251)
T 3m19_A 19 VDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLD-YNQLQTLSAGVFDDLTELGTLGLANN--- 93 (251)
T ss_dssp EECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS---
T ss_pred EecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECC-CCcCCccCHhHhccCCcCCEEECCCC---
Confidence 444555556665432 2578888888888877643 6778888888888 55677777777788888888888888
Q ss_pred cccccC-ccccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCC
Q 041248 579 KVLKLP-FGMSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEE 656 (813)
Q Consensus 579 ~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 656 (813)
.++.+| ..+..+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.+.++.+++|++|++++|.+..++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 777775 4467888888888888888888765 577888888888888 5677777557888888888888887766531
Q ss_pred CCccccccCCccchhHHhhcCCCCcEEEEEEcch
Q 041248 657 PSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSY 690 (813)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 690 (813)
..+..+++|+.|+++.|..
T Consensus 173 ---------------~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 173 ---------------GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ---------------TTTTTCTTCCEEECCSCCB
T ss_pred ---------------HHHhCCCCCCEEEeeCCce
Confidence 3466777888888877665
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=4e-14 Score=138.33 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=128.5
Q ss_pred cCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccc-cCccccCCCCC
Q 041248 515 EGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLK-LPFGMSKLGSL 593 (813)
Q Consensus 515 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-lp~~i~~L~~L 593 (813)
...+.++.|++++|.+..++.+..+++|++|++++| .+..++ .+..+++|++|++++| .++. .|..++.+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n---~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGK---DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECT---TCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECC---ccCcccChhhcCCCCC
Confidence 445689999999999999888889999999999955 666665 3889999999999999 7775 67889999999
Q ss_pred CEEeecCCCCcc-cchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhH
Q 041248 594 QLLDISHAGIRE-LPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVH 672 (813)
Q Consensus 594 ~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (813)
++|++++|.++. .|..+..+++|++|++++|..+..+|. +..+++|++|++++|.+.+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~~----------------- 175 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR----------------- 175 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCCT-----------------
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcChH-----------------
Confidence 999999999985 678899999999999999965788884 899999999999988776542
Q ss_pred HhhcCCCCcEEEEEEcchh
Q 041248 673 ELLGLRYLEVLELTLRSYD 691 (813)
Q Consensus 673 ~l~~L~~L~~L~l~~~~~~ 691 (813)
.+..+++|+.|++..|.+.
T Consensus 176 ~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TGGGCSSCCEEEECBC---
T ss_pred HhccCCCCCEEEeeCcccC
Confidence 4778899999999877653
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=1.6e-14 Score=150.37 Aligned_cols=169 Identities=22% Similarity=0.257 Sum_probs=124.7
Q ss_pred ccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCC
Q 041248 514 VEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSL 593 (813)
Q Consensus 514 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L 593 (813)
....+.++.|++.+|.+..++.+..+++|++|+++ ++.+..++. +..+++|++|++++| .++.+| .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~-~n~l~~~~~--l~~l~~L~~L~l~~n---~l~~~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN-GNKLTDIKP--LANLKNLGWLFLDEN---KVKDLS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS---CCCCGG-GGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEcc-CCccCCCcc--cccCCCCCEEECCCC---cCCCCh-hhccCCCC
Confidence 34556788888888888887777788888888888 556666665 778888888888888 777766 48888888
Q ss_pred CEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHH
Q 041248 594 QLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHE 673 (813)
Q Consensus 594 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (813)
++|++++|.++.+| .+..+++|++|++++| .+..++. ++.+++|++|++++|.+.+.+ .
T Consensus 115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-----------------~ 173 (291)
T 1h6t_A 115 KSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDIV-----------------P 173 (291)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCG-----------------G
T ss_pred CEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccch-----------------h
Confidence 88888888888874 5778888888888888 4666643 788888888888877665532 1
Q ss_pred hhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeeccc
Q 041248 674 LLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKL 714 (813)
Q Consensus 674 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 714 (813)
+..+++|+.|+++.|.+..++.+ ..+++|+.|+++++
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~l----~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQ 210 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGG----TTCTTCSEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCCChhh----ccCCCCCEEECcCC
Confidence 66778888888877766554332 22346677777664
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=4.3e-14 Score=143.92 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=132.3
Q ss_pred ceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEe
Q 041248 519 NVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLD 597 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~ 597 (813)
..+.++++++.+..+|.. -.++++.|+++ ++.+..++...|.++++|++|++++| .++.++ ..+.++++|++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-IPADTEKLDLQ-STGLATLSDATFRGLTKLTWLNLDYN---QLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-CCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS---CCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCccccCCC-CCCCCCEEEcc-CCCcCccCHhHhcCcccCCEEECCCC---cCCccCHhHhccCCcCCEEE
Confidence 456788888888887653 23689999999 66688888777999999999999999 787775 4578999999999
Q ss_pred ecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhc
Q 041248 598 ISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLG 676 (813)
Q Consensus 598 l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 676 (813)
+++|.++.+|.. +..+++|++|++++| .+..+|.+.++.+++|++|++++|++..++. ..+..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~~~~ 153 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---------------GAFDK 153 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------TTTTT
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCH---------------HHcCc
Confidence 999999988754 689999999999999 6788888767899999999999988876542 34677
Q ss_pred CCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecc
Q 041248 677 LRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNK 713 (813)
Q Consensus 677 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 713 (813)
+++|+.|+++.|.+..+.. .....+++|+.|++++
T Consensus 154 l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFG 188 (251)
T ss_dssp CTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCS
T ss_pred CcCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeC
Confidence 7888888887766543321 0111223455555554
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=2.6e-14 Score=148.83 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=48.0
Q ss_pred CCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCc
Q 041248 538 TCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLK 617 (813)
Q Consensus 538 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~ 617 (813)
.+++|+.|+++ ++.+..++. +..+++|++|++++| .++.++. +.++++|++|++++|.++.+|. +..+++|+
T Consensus 44 ~l~~L~~L~l~-~~~i~~~~~--~~~l~~L~~L~L~~n---~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIAN-NSDIKSVQG--IQYLPNVTKLFLNGN---KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECT-TSCCCCCTT--GGGCTTCCEEECCSS---CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred hcCcccEEEcc-CCCcccChh--HhcCCCCCEEEccCC---ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 34444555554 233444432 444455555555555 4444443 4445555555555555444432 44455555
Q ss_pred EEeccCcccccccchhhhcCCCCCceeecccccc
Q 041248 618 CLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGF 651 (813)
Q Consensus 618 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 651 (813)
+|++++| .+..++. +..+++|++|++++|.+
T Consensus 116 ~L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 116 SLSLEHN-GISDING--LVHLPQLESLYLGNNKI 146 (291)
T ss_dssp EEECTTS-CCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EEECCCC-cCCCChh--hcCCCCCCEEEccCCcC
Confidence 5555554 2344432 44455555555554433
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=4.1e-15 Score=162.08 Aligned_cols=207 Identities=19% Similarity=0.173 Sum_probs=101.8
Q ss_pred cceeEEeccccccccc------ccCCCCCceeEEEeeec--cccc-cccchh------hcCCCcccEEEeccCCcccccc
Q 041248 518 ENVRRLSLMQNQIEIL------SEVPTCPHLLTLFLDFN--YKLE-MITDGF------FQCMPSLKVLKMSNCGHVKVLK 582 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~l------~~~~~~~~L~~L~l~~~--~~~~-~~~~~~------~~~l~~L~~L~l~~~~~~~~~~ 582 (813)
+.++.|++++|.+... ..+..+++|++|++++| +.+. .+|..+ +..+++|++|+|++| .+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n---~l~~ 108 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN---AFGP 108 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC---CCCT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC---cCCH
Confidence 4566666666665442 12445666666666633 1111 122221 355666666666666 4443
Q ss_pred -----cCccccCCCCCCEEeecCCCCcc-----cchhhcCC---------CCCcEEeccCcccc-cccch--hhhcCCCC
Q 041248 583 -----LPFGMSKLGSLQLLDISHAGIRE-----LPEELKLL---------VNLKCLNLRWTRML-NKIPR--LLISNSSW 640 (813)
Q Consensus 583 -----lp~~i~~L~~L~~L~l~~~~i~~-----lp~~~~~l---------~~L~~L~l~~~~~l-~~lp~--~~i~~L~~ 640 (813)
+|..+..+++|++|+|++|.+.. ++..+..+ ++|++|++++|..- ..+|. ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 45556666666666666666542 23333333 66666666666321 23331 12556666
Q ss_pred CceeeccccccCCCCCCCccccccCCccchhH-HhhcCCCCcEEEEEEcchhh--HHhhhcchhhhhcceeeeecccCCc
Q 041248 641 LRVLRMFAIGFENSEEPSEDSVLIGGGEVLVH-ELLGLRYLEVLELTLRSYDA--LQFFLSSNKLKSCIRSLFLNKLGGT 717 (813)
Q Consensus 641 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~ 717 (813)
|++|++++|++.... ...... .+..+++|+.|+++.|.+.. ...+......+++|+.|+|++|. +
T Consensus 189 L~~L~L~~n~l~~~g-----------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i 256 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEG-----------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-L 256 (386)
T ss_dssp CCEEECCSSCCCHHH-----------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-C
T ss_pred cCEEECcCCCCCHhH-----------HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-C
Confidence 666666655443100 000122 45566666666666665521 11122222233456666666643 2
Q ss_pred ccccc----ccc--ccccccceeeeccc
Q 041248 718 KSIHA----TAF--SDLKHLNELCIRSA 739 (813)
Q Consensus 718 ~~l~~----~~l--~~l~~L~~L~l~~~ 739 (813)
..... ..+ .++++|+.|+|++|
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 21100 122 22566666666653
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=6.5e-14 Score=150.15 Aligned_cols=226 Identities=18% Similarity=0.179 Sum_probs=165.8
Q ss_pred eEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCc-cccCCCCCCEEeecCCCCc-ccchh-hcCCCCCcEE
Q 041248 543 LTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPF-GMSKLGSLQLLDISHAGIR-ELPEE-LKLLVNLKCL 619 (813)
Q Consensus 543 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~-~i~~L~~L~~L~l~~~~i~-~lp~~-~~~l~~L~~L 619 (813)
++++.+ ++.+..+|..+ .++++.|+|++| .++.+|. .+.+|++|++|+|++|.+. .+|.. +.++++|..+
T Consensus 12 ~~v~C~-~~~Lt~iP~~l---~~~l~~L~Ls~N---~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQ-ESKVTEIPSDL---PRNAIELRFVLT---KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEE-STTCCSCCTTC---CTTCSEEEEESC---CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEec-CCCCCccCcCc---CCCCCEEEccCC---cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 566666 56788999763 368999999999 8999985 5899999999999999874 56654 7889998876
Q ss_pred eccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEc-chhhHHhhhc
Q 041248 620 NLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLR-SYDALQFFLS 698 (813)
Q Consensus 620 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~ 698 (813)
...+++.+..+|.+.++.+++|++|++++|++..++. ..+....++..|++..+ ....++...
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~---------------~~~~~~~~l~~l~l~~~~~i~~l~~~~- 148 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD---------------VHKIHSLQKVLLDIQDNINIHTIERNS- 148 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC---------------CTTCCBSSCEEEEEESCTTCCEECTTS-
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCc---------------hhhcccchhhhhhhccccccccccccc-
Confidence 6555557888987778999999999999998877642 11233445666666532 222222111
Q ss_pred chhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCc
Q 041248 699 SNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKD 778 (813)
Q Consensus 699 ~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 778 (813)
.......++.|+++++ .++.++...+ ...+|+.|.+.+++.++.+..+.+. .+++|+.|+++++ .++.
T Consensus 149 f~~~~~~l~~L~L~~N-~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~---------~l~~L~~LdLs~N-~l~~ 216 (350)
T 4ay9_X 149 FVGLSFESVILWLNKN-GIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFH---------GASGPVILDISRT-RIHS 216 (350)
T ss_dssp STTSBSSCEEEECCSS-CCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTT---------TEECCSEEECTTS-CCCC
T ss_pred hhhcchhhhhhccccc-cccCCChhhc-cccchhHHhhccCCcccCCCHHHhc---------cCcccchhhcCCC-CcCc
Confidence 1122236788999884 5666664333 4578999999988888876554443 7999999999997 5888
Q ss_pred ccchhcCCCCceEeeecCchhhhhhc
Q 041248 779 LTFLVCAPSLKSLSLYGCNAMEEIIS 804 (813)
Q Consensus 779 l~~l~~l~~L~~L~l~~c~~l~~i~~ 804 (813)
+|. +.+.+|+.|.+.+|.+++++..
T Consensus 217 lp~-~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 217 LPS-YGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCS-SSCTTCCEEECTTCTTCCCCCC
T ss_pred cCh-hhhccchHhhhccCCCcCcCCC
Confidence 884 4488899999999988888764
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=5.2e-14 Score=160.84 Aligned_cols=169 Identities=21% Similarity=0.256 Sum_probs=135.8
Q ss_pred ccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCC
Q 041248 514 VEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSL 593 (813)
Q Consensus 514 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L 593 (813)
...++.++.|++.++.+..++.+..+++|+.|+++ ++.+..+++ +..+++|++|+|++| .+..+| .++.+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls-~N~l~~~~~--l~~l~~L~~L~Ls~N---~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN-GNKLTDIKP--LTNLKNLGWLFLDEN---KIKDLS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECT-TSCCCCCGG--GGGCTTCCEEECCSS---CCCCCT-TSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEee-CCCCCCChh--hccCCCCCEEECcCC---CCCCCh-hhccCCCC
Confidence 34556788899999988888888889999999998 556777776 788999999999999 787776 78889999
Q ss_pred CEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHH
Q 041248 594 QLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHE 673 (813)
Q Consensus 594 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (813)
++|+|++|.+..+| .+..|++|+.|+|++| .+..++. ++.|++|++|++++|.+.+.+ .
T Consensus 112 ~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~~~----------------~- 170 (605)
T 1m9s_A 112 KSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDIV----------------P- 170 (605)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCCCG----------------G-
T ss_pred CEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCCch----------------h-
Confidence 99999999988875 5888999999999998 5677743 889999999999988776542 1
Q ss_pred hhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeeccc
Q 041248 674 LLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKL 714 (813)
Q Consensus 674 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 714 (813)
+..+++|+.|+++.|.+..++.+ ..+++|+.|+|++|
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~~l----~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQ 207 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGG----TTCTTCSEEECCSE
T ss_pred hccCCCCCEEECcCCCCCCChHH----ccCCCCCEEEccCC
Confidence 77888899999988877665432 23457888888875
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=2e-14 Score=164.27 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=150.1
Q ss_pred eeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeec
Q 041248 520 VRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDIS 599 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~ 599 (813)
+..+.+..+.+..+.....+++|+.|+++ ++.+..++. +..+++|+.|+|++| .+..+|+ +..+++|++|+|+
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~-~n~i~~l~~--l~~l~~L~~L~Ls~N---~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIAN-NSDIKSVQG--IQYLPNVTKLFLNGN---KLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCT-TCCCCCCTT--GGGCTTCCEEECTTS---CCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECc-CCCCCCChH--HccCCCCCEEEeeCC---CCCCChh-hccCCCCCEEECc
Confidence 44445555555555556678899999999 566777764 889999999999999 8888876 8999999999999
Q ss_pred CCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCC
Q 041248 600 HAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRY 679 (813)
Q Consensus 600 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 679 (813)
+|.+..+| .+..+++|++|+|++| .+..+|. +..|++|+.|++++|.+.++ ..+..+++
T Consensus 96 ~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-----------------~~l~~l~~ 154 (605)
T 1m9s_A 96 ENKIKDLS-SLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITDI-----------------TVLSRLTK 154 (605)
T ss_dssp SSCCCCCT-TSTTCTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSCCCCC-----------------GGGGSCTT
T ss_pred CCCCCCCh-hhccCCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCccCCc-----------------hhhcccCC
Confidence 99999987 7899999999999999 5677765 89999999999998876543 45788999
Q ss_pred CcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccC
Q 041248 680 LEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAV 740 (813)
Q Consensus 680 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 740 (813)
|+.|+++.|.+..+.. ...+++|+.|+|++| .+..++ .+..+++|+.|+|+++.
T Consensus 155 L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~i~~l~--~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 155 LDTLSLEDNQISDIVP----LAGLTKLQNLYLSKN-HISDLR--ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCBCG--GGTTCTTCSEEECCSEE
T ss_pred CCEEECcCCcCCCchh----hccCCCCCEEECcCC-CCCCCh--HHccCCCCCEEEccCCc
Confidence 9999999888766544 233568999999986 444454 57888999999999754
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=1.7e-13 Score=136.16 Aligned_cols=149 Identities=18% Similarity=0.251 Sum_probs=115.6
Q ss_pred eEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeec
Q 041248 521 RRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDIS 599 (813)
Q Consensus 521 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~ 599 (813)
+.+++.++.+..+|.. -.++|+.|+++ ++.+..++...|..+++|++|+|++| .++.+ |..+.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~-~n~i~~i~~~~~~~l~~L~~L~Ls~N---~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LPETITEIRLE-QNTIKVIPPGAFSPYKKLRRIDLSNN---QISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSS-CCTTCCEEECC-SSCCCEECTTSSTTCTTCCEEECCSS---CCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCc-cCcCCCEEECC-CCcCCCcCHhHhhCCCCCCEEECCCC---cCCCcCHHHhhCCcCCCEEECC
Confidence 4566777777776542 23688888888 56677888777888889999999998 77776 6788888999999999
Q ss_pred CCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCC
Q 041248 600 HAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLR 678 (813)
Q Consensus 600 ~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 678 (813)
+|.++.+|.. +..+++|++|++++| .+..++...+..+++|++|++++|.+..++. ..+..++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~ 152 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---------------GTFSPLR 152 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------------TTTTTCT
T ss_pred CCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECH---------------HHHhCCC
Confidence 9988888876 578889999999888 5677765558888999999998888776542 3366778
Q ss_pred CCcEEEEEEcch
Q 041248 679 YLEVLELTLRSY 690 (813)
Q Consensus 679 ~L~~L~l~~~~~ 690 (813)
+|+.|+++.|..
T Consensus 153 ~L~~L~L~~N~~ 164 (220)
T 2v9t_B 153 AIQTMHLAQNPF 164 (220)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEeCCCCc
Confidence 888888887764
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=2.9e-13 Score=135.55 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=82.1
Q ss_pred eEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCc-cccCCCCCCEEeec
Q 041248 521 RRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPF-GMSKLGSLQLLDIS 599 (813)
Q Consensus 521 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~-~i~~L~~L~~L~l~ 599 (813)
+.++..++.+..+|.. ..++|+.|+++ ++.+..+++..|..+++|++|+|++| .++.+|. .+..+++|++|+|+
T Consensus 22 ~~v~c~~~~l~~ip~~-~~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~N---~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAG-IPTNAQILYLH-DNQITKLEPGVFDSLINLKELYLGSN---QLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS---CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeEccCCCcCccCCC-CCCCCCEEEcC-CCccCccCHHHhhCccCCcEEECCCC---CCCCcChhhcccCCCcCEEECC
Confidence 3455555555554431 22556666666 34455554444566666666666666 5555543 24556666666666
Q ss_pred CCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCC
Q 041248 600 HAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLR 678 (813)
Q Consensus 600 ~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 678 (813)
+|.++.+|.. +..+++|++|++++| .+..+|.+ +..+++|++|++++|.+..++. ..+..++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~ 159 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPH---------------GAFDRLS 159 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCCT---------------TTTTTCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccCH---------------HHHhCCC
Confidence 6666665544 455666666666666 35556655 5666666666666665554331 2345556
Q ss_pred CCcEEEEEEcch
Q 041248 679 YLEVLELTLRSY 690 (813)
Q Consensus 679 ~L~~L~l~~~~~ 690 (813)
+|+.|++..|..
T Consensus 160 ~L~~L~l~~N~~ 171 (229)
T 3e6j_A 160 SLTHAYLFGNPW 171 (229)
T ss_dssp TCCEEECTTSCB
T ss_pred CCCEEEeeCCCc
Confidence 666666665543
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=8.9e-14 Score=146.45 Aligned_cols=204 Identities=15% Similarity=0.053 Sum_probs=137.0
Q ss_pred CCcccEEEeccCCccccc-ccCccc--cCCCCCCEEeecCCCCccc-c----hhhcCCCCCcEEeccCcccccccchhhh
Q 041248 564 MPSLKVLKMSNCGHVKVL-KLPFGM--SKLGSLQLLDISHAGIREL-P----EELKLLVNLKCLNLRWTRMLNKIPRLLI 635 (813)
Q Consensus 564 l~~L~~L~l~~~~~~~~~-~lp~~i--~~L~~L~~L~l~~~~i~~l-p----~~~~~l~~L~~L~l~~~~~l~~lp~~~i 635 (813)
+++|++|++++| .+. ..|..+ ..+++|++|++++|.+... | ..+..+++|++|++++|. +..+|...+
T Consensus 90 ~~~L~~L~l~~n---~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~ 165 (310)
T 4glp_A 90 YSRLKELTLEDL---KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQV 165 (310)
T ss_dssp HSCCCEEEEESC---CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSC
T ss_pred cCceeEEEeeCC---EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHh
Confidence 466888888888 665 446566 7888888888888877742 2 234568888888888884 566665457
Q ss_pred cCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcc-hhhhhcceeeeeccc
Q 041248 636 SNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSS-NKLKSCIRSLFLNKL 714 (813)
Q Consensus 636 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~ 714 (813)
+.+++|++|++++|++.+.. .......++.+++|+.|+++.|....++..... ...+++|+.|+++++
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGER-----------GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHH-----------HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred ccCCCCCEEECCCCCCccch-----------hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 88888888888877643210 000001135677888888888877655543222 233468899999886
Q ss_pred CCccccccccccc---ccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCcccchhcCCCCceE
Q 041248 715 GGTKSIHATAFSD---LKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLTFLVCAPSLKSL 791 (813)
Q Consensus 715 ~~~~~l~~~~l~~---l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L 791 (813)
. +.......+.. +++|+.|+++++ .++.+ +. . .+++|+.|++++|. ++.+|.+..+++|+.|
T Consensus 235 ~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~---------~--~~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L 299 (310)
T 4glp_A 235 S-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQV-PK---------G--LPAKLRVLDLSSNR-LNRAPQPDELPEVDNL 299 (310)
T ss_dssp C-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC-CS---------C--CCSCCSCEECCSCC-CCSCCCTTSCCCCSCE
T ss_pred C-CCccchhhHHhccCcCcCCEEECCCC-CCCch-hh---------h--hcCCCCEEECCCCc-CCCCchhhhCCCccEE
Confidence 4 33331112333 479999999874 45533 11 1 24799999999975 7787877889999999
Q ss_pred eeecCc
Q 041248 792 SLYGCN 797 (813)
Q Consensus 792 ~l~~c~ 797 (813)
++++.+
T Consensus 300 ~L~~N~ 305 (310)
T 4glp_A 300 TLDGNP 305 (310)
T ss_dssp ECSSTT
T ss_pred ECcCCC
Confidence 998864
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=1.6e-14 Score=157.30 Aligned_cols=238 Identities=16% Similarity=0.123 Sum_probs=166.0
Q ss_pred CCCCCceeEEEeeeccccccccch----hhcCCCcccEEEeccCCccccc----ccCcc-------ccCCCCCCEEeecC
Q 041248 536 VPTCPHLLTLFLDFNYKLEMITDG----FFQCMPSLKVLKMSNCGHVKVL----KLPFG-------MSKLGSLQLLDISH 600 (813)
Q Consensus 536 ~~~~~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~----~lp~~-------i~~L~~L~~L~l~~ 600 (813)
+..+++|++|++++ +.+...... .+..+++|++|+|++| .+. .+|.. +..+++|++|+|++
T Consensus 28 l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~---~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 28 LLEDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDI---FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp HHHCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSC---CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HhcCCCccEEECCC-CCCCHHHHHHHHHHHHhCCCccEEeCccc---ccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45788999999994 455543222 2668999999999998 443 23433 37899999999999
Q ss_pred CCCcc-----cchhhcCCCCCcEEeccCcccccc-----cchhhhcCC---------CCCceeeccccccCCCCCCCccc
Q 041248 601 AGIRE-----LPEELKLLVNLKCLNLRWTRMLNK-----IPRLLISNS---------SWLRVLRMFAIGFENSEEPSEDS 661 (813)
Q Consensus 601 ~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~-----lp~~~i~~L---------~~L~~L~l~~~~~~~~~~~~~~~ 661 (813)
|.+.. +|..+..+++|++|++++|. +.. ++.. +..+ ++|++|++++|++....
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~------ 175 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLENGS------ 175 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCTGGG------
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCCcHH------
Confidence 99886 88889999999999999995 432 2332 4444 89999999988765210
Q ss_pred cccCCccchhHHhhcCCCCcEEEEEEcchh--hHHhhhc-chhhhhcceeeeecccCCc----cccccccccccccccee
Q 041248 662 VLIGGGEVLVHELLGLRYLEVLELTLRSYD--ALQFFLS-SNKLKSCIRSLFLNKLGGT----KSIHATAFSDLKHLNEL 734 (813)
Q Consensus 662 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~--~~~~~~~-~~~~~~~L~~L~l~~~~~~----~~l~~~~l~~l~~L~~L 734 (813)
.......+..+++|+.|+++.|.+. ....+.. ....+++|+.|+|++|.-- ..++ ..+..+++|+.|
T Consensus 176 -----~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L 249 (386)
T 2ca6_A 176 -----MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLREL 249 (386)
T ss_dssp -----HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEE
T ss_pred -----HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCcCEE
Confidence 1112246788999999999998875 2223332 3445568999999987531 2233 257788999999
Q ss_pred eecccCccceeeecccccCCCCCCc--ccccCcceEeeccCcCCCc-----cc-ch-hcCCCCceEeeecCch
Q 041248 735 CIRSAVELEELKVDYTEIAPKRSEP--FVFRSLHRVTMERCHKLKD-----LT-FL-VCAPSLKSLSLYGCNA 798 (813)
Q Consensus 735 ~l~~~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~-----l~-~l-~~l~~L~~L~l~~c~~ 798 (813)
+|++|. +.......+. ... ..+++|+.|+|++|. +.. +| .+ ..+++|++|++++|+-
T Consensus 250 ~L~~n~-i~~~~~~~l~-----~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 250 GLNDCL-LSARGAAAVV-----DAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp ECTTCC-CCHHHHHHHH-----HHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred ECCCCC-CchhhHHHHH-----HHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 999865 4321111000 001 137899999999986 444 66 34 5689999999998863
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=3.4e-13 Score=138.02 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=123.5
Q ss_pred CCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCC
Q 041248 511 VPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKL 590 (813)
Q Consensus 511 ~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L 590 (813)
++.....+.++.|++.+|.+..++.+..+++|+.|+++ ++.+..++. +..+++|++|++++| .++.+|....
T Consensus 34 ~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~-~N~i~~~~~--l~~l~~L~~L~L~~N---~l~~l~~~~~-- 105 (263)
T 1xeu_A 34 LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS-HNQISDLSP--LKDLTKLEELSVNRN---RLKNLNGIPS-- 105 (263)
T ss_dssp EECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCSSCCEEECCSS---CCSCCTTCCC--
T ss_pred ccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECC-CCccCCChh--hccCCCCCEEECCCC---ccCCcCcccc--
Confidence 33445567888999999988888878888999999998 556777776 788999999999999 7888775433
Q ss_pred CCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccch
Q 041248 591 GSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVL 670 (813)
Q Consensus 591 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 670 (813)
.+|++|++++|.++.+| .+..+++|++|++++| .+..+|. ++.+++|++|++++|.+.+.
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~---------------- 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT---------------- 165 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC----------------
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch----------------
Confidence 88999999999998886 5888999999999998 5777774 88899999999998776543
Q ss_pred hHHhhcCCCCcEEEEEEcchhh
Q 041248 671 VHELLGLRYLEVLELTLRSYDA 692 (813)
Q Consensus 671 ~~~l~~L~~L~~L~l~~~~~~~ 692 (813)
..+..+++|+.|+++.|.+..
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEEC
T ss_pred -HHhccCCCCCEEeCCCCcccC
Confidence 346778889999998877643
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=4.7e-13 Score=133.02 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=114.8
Q ss_pred eEEecccccccccccCCCCCceeEEEeeeccccccc-cchhhcCCCcccEEEeccCCcccccccCc-cccCCCCCCEEee
Q 041248 521 RRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMI-TDGFFQCMPSLKVLKMSNCGHVKVLKLPF-GMSKLGSLQLLDI 598 (813)
Q Consensus 521 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~lp~-~i~~L~~L~~L~l 598 (813)
+.+++++|.+..+|. .-.+.++.|+++ ++.+..+ +..+|..+++|++|+|++| .++.++. .+.++++|++|+|
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~-~N~l~~~~~~~~~~~l~~L~~L~L~~N---~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLN-NNEFTVLEATGIFKKLPQLRKINFSNN---KITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECC-SSCCCEECCCCCGGGCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcC-CCcCCccCchhhhccCCCCCEEECCCC---cCCEECHHHhCCCCCCCEEEC
Confidence 467888888777754 224567888888 5567666 4456888899999999998 7877754 7888999999999
Q ss_pred cCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcC
Q 041248 599 SHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGL 677 (813)
Q Consensus 599 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 677 (813)
++|.++.+|.. +..+++|++|++++| .+..++...+..+++|++|++++|.+.++.+ ..+..+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l 152 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAP---------------GAFDTL 152 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCT---------------TTTTTC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECH---------------HHhcCC
Confidence 99988888765 788899999999988 4666654458889999999998887776531 446778
Q ss_pred CCCcEEEEEEcchh
Q 041248 678 RYLEVLELTLRSYD 691 (813)
Q Consensus 678 ~~L~~L~l~~~~~~ 691 (813)
++|+.|+++.|...
T Consensus 153 ~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 153 HSLSTLNLLANPFN 166 (220)
T ss_dssp TTCCEEECCSCCEE
T ss_pred CCCCEEEecCcCCc
Confidence 88888888877653
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=7.4e-13 Score=131.58 Aligned_cols=148 Identities=25% Similarity=0.310 Sum_probs=125.6
Q ss_pred EEEEcCCccCcCCCccCccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCc
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGH 577 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 577 (813)
.+.+.+..+..+|... .+.++.|++.+|.+..++ .+..+++|+.|+++ ++.+..+++..|.++++|++|+|++|
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N-- 90 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYGN-- 90 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECCSS--
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECCCC--
Confidence 3455566667776532 368999999999999876 47889999999999 66788887777999999999999999
Q ss_pred ccccccCcc-ccCCCCCCEEeecCCCCcccc-hhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 578 VKVLKLPFG-MSKLGSLQLLDISHAGIRELP-EELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 578 ~~~~~lp~~-i~~L~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
.++.+|.. +.++++|++|+|++|.++.++ ..+..+++|++|++++| .+..+|.+.+..+++|++|++.+|.+..
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 -KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred -cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 89999865 588999999999999999884 56899999999999999 5788887779999999999999887654
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=6.2e-13 Score=133.10 Aligned_cols=146 Identities=25% Similarity=0.324 Sum_probs=124.6
Q ss_pred EEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccc
Q 041248 502 VCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVK 579 (813)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 579 (813)
.+.+..+..+|.. -.+.++.|++++|.+..+.. +..+++|+.|+++ ++.+..++...|..+++|++|+|++| .
T Consensus 25 ~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~N~l~~i~~~~~~~l~~L~~L~Ls~N---~ 99 (229)
T 3e6j_A 25 DCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLG-SNQLGALPVGVFDSLTQLTVLDLGTN---Q 99 (229)
T ss_dssp ECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS---C
T ss_pred EccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECC-CCCCCCcChhhcccCCCcCEEECCCC---c
Confidence 3444555666653 23789999999999988733 6789999999999 66788999888999999999999999 8
Q ss_pred ccccCcc-ccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 580 VLKLPFG-MSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 580 ~~~lp~~-i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
++.+|.. +..+++|++|++++|.++.+|..+..+++|++|++++| .+..+|...+..+++|++|++.+|.+..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 8888754 68899999999999999999999999999999999999 6788887778999999999999887654
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=5e-13 Score=131.78 Aligned_cols=147 Identities=22% Similarity=0.299 Sum_probs=98.6
Q ss_pred EEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCcc-ccCCCCCCEEeecC
Q 041248 522 RLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFG-MSKLGSLQLLDISH 600 (813)
Q Consensus 522 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~-i~~L~~L~~L~l~~ 600 (813)
.+....+.+..+|. ...++|+.|+++ ++.+..++...|..+++|++|++++| .++.+|.. +..+++|++|++++
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLE-TNSLKSLPNGVFDELTSLTQLYLGGN---KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS---CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcC-CCccCcCChhhhcccccCcEEECCCC---ccCccChhhcCCCCCcCEEECCC
Confidence 44455555555542 234577778877 44566777766777788888888887 67766543 56777888888888
Q ss_pred CCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCC
Q 041248 601 AGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRY 679 (813)
Q Consensus 601 ~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 679 (813)
|.++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++++|.+.+++. ..+..+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------------~~~~~l~~ 149 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD---------------GVFDRLTS 149 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------------TTTTTCTT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCH---------------HHhccCCC
Confidence 877777655 577788888888777 4666766556777888888887776665431 22455666
Q ss_pred CcEEEEEEcc
Q 041248 680 LEVLELTLRS 689 (813)
Q Consensus 680 L~~L~l~~~~ 689 (813)
|+.|+++.|.
T Consensus 150 L~~L~l~~N~ 159 (208)
T 2o6s_A 150 LQYIWLHDNP 159 (208)
T ss_dssp CCEEECCSCC
T ss_pred ccEEEecCCC
Confidence 6666666553
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=8.7e-14 Score=149.99 Aligned_cols=235 Identities=13% Similarity=0.117 Sum_probs=129.9
Q ss_pred ceeEEecccccccccc------cCCCCC-ceeEEEeeeccccccccchhhcCC-----CcccEEEeccCCcccccccC-c
Q 041248 519 NVRRLSLMQNQIEILS------EVPTCP-HLLTLFLDFNYKLEMITDGFFQCM-----PSLKVLKMSNCGHVKVLKLP-F 585 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~------~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~lp-~ 585 (813)
.++.|++++|.+...+ .+..++ +|++|+++ ++.+.......+..+ ++|++|+|++| .++..+ .
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n---~l~~~~~~ 98 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS-GNSLGFKNSDELVQILAAIPANVTSLNLSGN---FLSYKSSD 98 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECC-SSCGGGSCHHHHHHHHHTSCTTCCEEECCSS---CGGGSCHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECc-CCCCCHHHHHHHHHHHhccCCCccEEECcCC---cCChHHHH
Confidence 4777888877776643 235566 78888887 445555544434443 77888888887 565443 2
Q ss_pred c----ccCC-CCCCEEeecCCCCcccchh-----hcC-CCCCcEEeccCccccc-----ccchhhhcCCC-CCceeeccc
Q 041248 586 G----MSKL-GSLQLLDISHAGIRELPEE-----LKL-LVNLKCLNLRWTRMLN-----KIPRLLISNSS-WLRVLRMFA 648 (813)
Q Consensus 586 ~----i~~L-~~L~~L~l~~~~i~~lp~~-----~~~-l~~L~~L~l~~~~~l~-----~lp~~~i~~L~-~L~~L~l~~ 648 (813)
. +..+ ++|++|++++|.++..+.. +.. .++|++|++++|. +. .++.. +..++ +|++|++++
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTT
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecC
Confidence 2 3344 6788888888877765532 333 3578888888773 44 33443 45554 788888877
Q ss_pred cccCCCCCCCccccccCCccchhHHhhcC-CCCcEEEEEEcchhh--HHhhhcchhh-hhcceeeeecccCCcccccc--
Q 041248 649 IGFENSEEPSEDSVLIGGGEVLVHELLGL-RYLEVLELTLRSYDA--LQFFLSSNKL-KSCIRSLFLNKLGGTKSIHA-- 722 (813)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~--~~~~~~~~~~-~~~L~~L~l~~~~~~~~l~~-- 722 (813)
|++.... .......+..+ ++|+.|+++.|.+.. ...+...... .++|+.|++++| .+.....
T Consensus 177 n~l~~~~-----------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~ 244 (362)
T 3goz_A 177 NNLASKN-----------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLEN 244 (362)
T ss_dssp SCGGGSC-----------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHH
T ss_pred CCCchhh-----------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHH
Confidence 7665432 11122344555 478888887776644 1111111111 236777777775 3332221
Q ss_pred --cccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCc
Q 041248 723 --TAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCH 774 (813)
Q Consensus 723 --~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 774 (813)
..+..+++|+.|++++|. +..+...... ........+++|+.|++++++
T Consensus 245 l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~--~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDI-VKNMSKEQCK--ALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHH-HTTCCHHHHH--HHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCccEEEeccCC-ccccCHHHHH--HHHHHhccCCceEEEecCCCc
Confidence 123456777777777653 1111111000 000111356677777777765
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=8.2e-14 Score=142.64 Aligned_cols=166 Identities=19% Similarity=0.155 Sum_probs=127.9
Q ss_pred CccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCE
Q 041248 516 GWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQL 595 (813)
Q Consensus 516 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~ 595 (813)
....+..+.+..+.+..++.+..+++|++|+++ ++.+..++ . +..+++|++|++++| .++.+|. +.++++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~-~n~i~~l~-~-l~~l~~L~~L~L~~N---~i~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGD-NSNIQSLA-G-MQFFTNLKELHLSHN---QISDLSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECT-TSCCCCCT-T-GGGCTTCCEEECCSS---CCCCCGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECc-CCCcccch-H-HhhCCCCCEEECCCC---ccCCChh-hccCCCCCE
Confidence 344566677777888877777788999999999 55677777 3 788999999999999 8888876 889999999
Q ss_pred EeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhh
Q 041248 596 LDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELL 675 (813)
Q Consensus 596 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 675 (813)
|++++|.++.+|.... ++|++|++++| .+..+|. ++.+++|++|++++|.+.++ ..+.
T Consensus 90 L~L~~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~~-----------------~~l~ 147 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKSI-----------------VMLG 147 (263)
T ss_dssp EECCSSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCBC-----------------GGGG
T ss_pred EECCCCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCCC-----------------hHHc
Confidence 9999999998876443 89999999998 5777764 88999999999998876543 2467
Q ss_pred cCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeeccc
Q 041248 676 GLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKL 714 (813)
Q Consensus 676 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 714 (813)
.+++|+.|+++.|.+.... ....+++|+.|+++++
T Consensus 148 ~l~~L~~L~L~~N~i~~~~----~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNTG----GLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GCTTCCEEECTTSCCCBCT----TSTTCCCCCEEEEEEE
T ss_pred cCCCCCEEECCCCcCcchH----HhccCCCCCEEeCCCC
Confidence 7888888888877665441 1222346777777664
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.42 E-value=5.4e-14 Score=157.24 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=83.1
Q ss_pred ceeEEecccccccccc--c-CCCCCceeEEEeeecccccc-----ccchhhcCCCcccEEEeccCCccccccc-Cccc-c
Q 041248 519 NVRRLSLMQNQIEILS--E-VPTCPHLLTLFLDFNYKLEM-----ITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGM-S 588 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i-~ 588 (813)
++++|+++++.+...+ . +..+++|++|++++| .+.. ++ ..+..+++|++|++++| .+... +..+ .
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n---~l~~~~~~~l~~ 78 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDIS-SALRVNPALAELNLRSN---ELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHH-HHHHTCTTCCEEECTTC---CCHHHHHHHHHH
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHH-HHHHhCCCcCEEeCCCC---cCChHHHHHHHH
Confidence 5666777666654421 1 355667777777743 3332 22 23556677777777776 44331 1111 2
Q ss_pred CCC----CCCEEeecCCCCc-----ccchhhcCCCCCcEEeccCcccccc-----cchhhhcCCCCCceeeccccccCCC
Q 041248 589 KLG----SLQLLDISHAGIR-----ELPEELKLLVNLKCLNLRWTRMLNK-----IPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 589 ~L~----~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
.+. +|++|++++|.+. .+|..+..+++|++|++++|. +.. +.......+++|++|++++|++...
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 233 5777777777666 356666777777777777764 322 1112122345677777766554331
Q ss_pred CCCCccccccCCccchhHHhhcCCCCcEEEEEEcch
Q 041248 655 EEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSY 690 (813)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 690 (813)
. .......+..+++|+.|+++.|..
T Consensus 158 ~-----------~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 158 S-----------CEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp G-----------HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred H-----------HHHHHHHHhhCCCCCEEECcCCCc
Confidence 1 111223445556666666665554
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.7e-11 Score=133.21 Aligned_cols=289 Identities=14% Similarity=-0.022 Sum_probs=177.7
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccC----CCC-CCEEEEEEecCcc-CHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLES----PTS-FDCVIWAVVSKDL-RLEKI 227 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~~ 227 (813)
..++||+.+++++.+++.. +..+.+.|+|++|+|||++|+.+++..... ... ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5789999999999887753 346789999999999999999999875111 011 3457788877666 78888
Q ss_pred HHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc--cccc-ccCCCCCCCCCcEEEEEcCcccccc
Q 041248 228 QEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD--LTKM-GIPLSGPKNTTSKVVFTTRFVDVCG 304 (813)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~-~~~l~~~~~~~s~ilvTtR~~~v~~ 304 (813)
+..++..+..........+.......+...+..++.+|||||++.... .... ...+.... .+..+|+||+......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 888888873221112334456667778888877777999999975321 1111 11111112 6788899998753211
Q ss_pred cC------CCCcceEcCCCCHHHHHHHHHHhhC---CCccCCChhHHHHHHHHHHHhC---Ccch-HHHHHHHh--hc--
Q 041248 305 SM------EADKKFQVACLSEEDAWELFRKKVG---EETLESDHDIVELAQTVAKECG---GLPL-ALITIGRA--MA-- 367 (813)
Q Consensus 305 ~~------~~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~--l~-- 367 (813)
.+ .....+++++++.++..+++...+. ... ..++ +..+.|++.++ |.|. |+..+-.. +.
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKG-TYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTT-SCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccC-CcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 11 1123899999999999999998753 111 1222 45677888887 8887 44433322 22
Q ss_pred -CCCCHHHHHHHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhccCCCCccccHHHHHHHHHHcCCcccc
Q 041248 368 -FKKTAEEWIHAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDLIDCWIGEGFLEES 446 (813)
Q Consensus 368 -~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 446 (813)
..-+.+.+..+++... ...+..++..|++ +.+..+..++....+-.+. .......-..| +.
T Consensus 255 ~~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-- 316 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYE-------------QERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-- 316 (384)
T ss_dssp SSCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC--
T ss_pred CCccCHHHHHHHHHHHh-------------cchHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC--
Confidence 1236667766655332 1345567788887 6666666566511101111 11111111222 11
Q ss_pred cccchHhhHHHHHHHHHHhccccee
Q 041248 447 DRFSAENQGYYIVGTLVHACLLEEV 471 (813)
Q Consensus 447 ~~~~~~~~~~~~l~~L~~~~ll~~~ 471 (813)
.........+++.|...+++...
T Consensus 317 --~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 --PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp --CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred --CCCHHHHHHHHHHHHhCCCEEEE
Confidence 12335667789999999999874
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=2.2e-13 Score=143.40 Aligned_cols=223 Identities=18% Similarity=0.127 Sum_probs=139.3
Q ss_pred ceeEEecccccccc-----cccCCCCCceeEEEeeecccccc-ccchhh-cCCCcccEEEeccCCccccccc-C----cc
Q 041248 519 NVRRLSLMQNQIEI-----LSEVPTCPHLLTLFLDFNYKLEM-ITDGFF-QCMPSLKVLKMSNCGHVKVLKL-P----FG 586 (813)
Q Consensus 519 ~~~~l~l~~~~~~~-----l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~l-p----~~ 586 (813)
.++++.+....+.. +.....+++|+.|++++| .+.. .|..++ ..+++|++|++++| .+... | ..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n---~i~~~~~~~~~~~ 140 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV---SWATGRSWLAELQ 140 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC---CCSSTTSSHHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc---cccchhhhhHHHH
Confidence 45666666554432 222234456888888844 4443 444422 77888888888888 55542 2 23
Q ss_pred ccCCCCCCEEeecCCCCcccc-hhhcCCCCCcEEeccCcccccc--cchh-hhcCCCCCceeeccccccCCCCCCCcccc
Q 041248 587 MSKLGSLQLLDISHAGIRELP-EELKLLVNLKCLNLRWTRMLNK--IPRL-LISNSSWLRVLRMFAIGFENSEEPSEDSV 662 (813)
Q Consensus 587 i~~L~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~--lp~~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 662 (813)
+..+++|++|++++|.+..+| ..++.+++|++|++++|..... ++.. .++.+++|++|++++|++..++
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~------- 213 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT------- 213 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH-------
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH-------
Confidence 456788888888888887765 4577888888888888843221 3222 1367888888888877665321
Q ss_pred ccCCccchhH-HhhcCCCCcEEEEEEcchhhH-HhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccC
Q 041248 663 LIGGGEVLVH-ELLGLRYLEVLELTLRSYDAL-QFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAV 740 (813)
Q Consensus 663 ~~~~~~~~~~-~l~~L~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~ 740 (813)
.... -++.+++|+.|+++.|.+... +........+++|+.|+++++ .++.++. .+ .++|+.|++++ +
T Consensus 214 ------~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~-~~--~~~L~~L~Ls~-N 282 (310)
T 4glp_A 214 ------GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPK-GL--PAKLRVLDLSS-N 282 (310)
T ss_dssp ------HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCS-CC--CSCCSCEECCS-C
T ss_pred ------HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhh-hh--cCCCCEEECCC-C
Confidence 1112 246778888888887776543 221222211258888898885 4445543 23 27899999987 4
Q ss_pred ccceeeecccccCCCCCCcccccCcceEeeccCc
Q 041248 741 ELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCH 774 (813)
Q Consensus 741 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 774 (813)
.++.+ + ....+++|+.|++++++
T Consensus 283 ~l~~~-~----------~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 283 RLNRA-P----------QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCSC-C----------CTTSCCCCSCEECSSTT
T ss_pred cCCCC-c----------hhhhCCCccEEECcCCC
Confidence 45532 1 12368899999998875
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=1.3e-12 Score=127.49 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=120.8
Q ss_pred EEEEcCCccCcCCCccCccceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccc
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVK 579 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 579 (813)
.+...+..+..++.....++++.|++++|.+..++.+..+++|++|++++ +.+.......+..+++|++|++++| .
T Consensus 48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n---~ 123 (197)
T 4ezg_A 48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMG-KDVTSDKIPNLSGLTSLTLLDISHS---A 123 (197)
T ss_dssp EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEEC-TTCBGGGSCCCTTCTTCCEEECCSS---B
T ss_pred EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeEC-CccCcccChhhcCCCCCCEEEecCC---c
Confidence 34445556667777778889999999999988888889999999999994 5566533334889999999999999 7
Q ss_pred ccc-cCccccCCCCCCEEeecCCC-CcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 580 VLK-LPFGMSKLGSLQLLDISHAG-IRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 580 ~~~-lp~~i~~L~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
+.. .|..++.+++|++|++++|. +..+| .+..+++|++|++++| .+..++. +..+++|++|++++|.+.+
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC----
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccCC
Confidence 764 57789999999999999997 99998 7999999999999999 5788873 8999999999999887643
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=129.52 Aligned_cols=147 Identities=18% Similarity=0.249 Sum_probs=122.7
Q ss_pred EEEcCCccCcCCCccCccceeEEeccccccccccc---CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCc
Q 041248 501 LVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE---VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGH 577 (813)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 577 (813)
+.+.+..+..+|.. -...++.|++++|.+..++. +..+++|++|+++ ++.+..++...|..+++|++|+|++|
T Consensus 16 l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N-- 91 (220)
T 2v70_A 16 VDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSN-- 91 (220)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS--
T ss_pred eEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEECCCC--
Confidence 34445556666642 23567899999999988732 6789999999999 66788888877999999999999999
Q ss_pred ccccccCc-cccCCCCCCEEeecCCCCccc-chhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 578 VKVLKLPF-GMSKLGSLQLLDISHAGIREL-PEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 578 ~~~~~lp~-~i~~L~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
.++.+|. .+.++++|++|+|++|.++.+ |..+..+++|++|++++| .+..+++..+..+++|++|++.+|.+..
T Consensus 92 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 -RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp -CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred -ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8888865 488999999999999999988 567999999999999999 5777755459999999999999887764
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=2.4e-12 Score=126.88 Aligned_cols=146 Identities=25% Similarity=0.381 Sum_probs=122.6
Q ss_pred EEcCCccCcCCCccCccceeEEeccccccccccc--CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccc
Q 041248 502 VCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVK 579 (813)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 579 (813)
.+.+.+...+|. .-.+.++.|++++|.+..++. +..+++|++|+++ ++.+..++...|..+++|++|++++| .
T Consensus 13 ~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n---~ 87 (208)
T 2o6s_A 13 ECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNKLTSLTYLNLSTN---Q 87 (208)
T ss_dssp ECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS---C
T ss_pred EecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECC-CCccCccChhhcCCCCCcCEEECCCC---c
Confidence 344445555553 234589999999999988765 6789999999999 56788898888899999999999999 8
Q ss_pred ccccCcc-ccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 580 VLKLPFG-MSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 580 ~~~lp~~-i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
++.+|.. +.++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++.+|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec
Confidence 8888754 68999999999999999998876 789999999999999 5778888768999999999999876543
No 115
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.39 E-value=9.8e-14 Score=155.11 Aligned_cols=205 Identities=16% Similarity=0.159 Sum_probs=108.0
Q ss_pred cceeEEeccccccccc--ccC-CCCC----ceeEEEeeeccccccc----cchhhcCCCcccEEEeccCCccccccc-Cc
Q 041248 518 ENVRRLSLMQNQIEIL--SEV-PTCP----HLLTLFLDFNYKLEMI----TDGFFQCMPSLKVLKMSNCGHVKVLKL-PF 585 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~l--~~~-~~~~----~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~ 585 (813)
++++.|++++|.+... ..+ ..++ +|++|++++| .+... ....+..+++|++|++++| .+... +.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n---~i~~~~~~ 131 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN---LLGDAGLQ 131 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS---BCHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC---cCchHHHH
Confidence 5667777777665441 111 1122 5777777733 34321 1233666777777777777 44321 11
Q ss_pred c-----ccCCCCCCEEeecCCCCcc-----cchhhcCCCCCcEEeccCcccccccchhhhc-----CCCCCceeeccccc
Q 041248 586 G-----MSKLGSLQLLDISHAGIRE-----LPEELKLLVNLKCLNLRWTRMLNKIPRLLIS-----NSSWLRVLRMFAIG 650 (813)
Q Consensus 586 ~-----i~~L~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~-----~L~~L~~L~l~~~~ 650 (813)
. ...+.+|++|++++|.++. ++..+..+++|++|++++|. +.......+. .+++|++|++++|.
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 1 1224467777777776653 35556666777777777764 3322111121 35577777777665
Q ss_pred cCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHH--hhhcc-hhhhhcceeeeecccCCccccc----cc
Q 041248 651 FENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQ--FFLSS-NKLKSCIRSLFLNKLGGTKSIH----AT 723 (813)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~~~~~~l~----~~ 723 (813)
+.... .......+..+++|+.|+++.|...... .+... ....++|+.|++++| .++... ..
T Consensus 211 l~~~~-----------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~ 278 (461)
T 1z7x_W 211 VTSDN-----------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCR 278 (461)
T ss_dssp CBTTH-----------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHH
T ss_pred CcHHH-----------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHH
Confidence 54321 0112345667788888888877654321 11111 112347777777775 333311 01
Q ss_pred ccccccccceeeeccc
Q 041248 724 AFSDLKHLNELCIRSA 739 (813)
Q Consensus 724 ~l~~l~~L~~L~l~~~ 739 (813)
.+..+++|+.|+++++
T Consensus 279 ~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 279 VLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHCTTCCEEECTTC
T ss_pred HHhhCCCcceEECCCC
Confidence 3445677777777754
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.2e-12 Score=140.99 Aligned_cols=170 Identities=22% Similarity=0.268 Sum_probs=132.8
Q ss_pred EEEEcCCccCcCCCccCccceeEEeccccccccccc--CC-CCCceeEEEeeeccccccccchhhcCCCcccEEEeccCC
Q 041248 500 FLVCSGAGVGAVPDVEGWENVRRLSLMQNQIEILSE--VP-TCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCG 576 (813)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 576 (813)
.+.+.+..+..+|.. -...++.|++++|.+..++. +. .+++|+.|+++ ++.+..++...|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N- 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSN- 98 (361)
T ss_dssp EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEECCCC-
Confidence 344555566666652 23568899999999988754 44 88999999999 66788888777999999999999999
Q ss_pred cccccccCc-cccCCCCCCEEeecCCCCccc-chhhcCCCCCcEEeccCcccccccchhhh---cCCCCCceeecccccc
Q 041248 577 HVKVLKLPF-GMSKLGSLQLLDISHAGIREL-PEELKLLVNLKCLNLRWTRMLNKIPRLLI---SNSSWLRVLRMFAIGF 651 (813)
Q Consensus 577 ~~~~~~lp~-~i~~L~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i---~~L~~L~~L~l~~~~~ 651 (813)
.++.+|. .+.++.+|++|+|++|.|..+ |..+..+++|++|+|++| .+..+|...+ ..+++|++|++++|.+
T Consensus 99 --~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 99 --HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp --CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred --cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 8888764 588899999999999999987 556889999999999999 6788888755 6799999999999888
Q ss_pred CCCCCCCccccccCCccchhHHhhcCCC--CcEEEEEEcch
Q 041248 652 ENSEEPSEDSVLIGGGEVLVHELLGLRY--LEVLELTLRSY 690 (813)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~--L~~L~l~~~~~ 690 (813)
..++ ...+..+++ |+.|++..|..
T Consensus 176 ~~l~---------------~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KKLP---------------LTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCC---------------HHHHHHSCHHHHTTEECCSSCE
T ss_pred CccC---------------HHHhhhccHhhcceEEecCCCc
Confidence 7653 244566665 36788877654
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=2e-12 Score=146.10 Aligned_cols=180 Identities=19% Similarity=0.201 Sum_probs=96.2
Q ss_pred ceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEee
Q 041248 519 NVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDI 598 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l 598 (813)
+++.|++.+|.+..+|... +++|++|+++ ++.+..+| ..+++|++|++++| .++.+|. +++ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls-~N~l~~ip----~~l~~L~~L~Ls~N---~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEIT-QNALISLP----ELPASLEYLDACDN---RLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECC-SSCCSCCC----CCCTTCCEEECCSS---CCSCCCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECc-CCCCcccc----cccCCCCEEEccCC---CCCCcch-hhc--CCCEEEC
Confidence 4556666666665554321 3566666666 44455555 23566666666666 5666665 443 6666666
Q ss_pred cCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCC
Q 041248 599 SHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLR 678 (813)
Q Consensus 599 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 678 (813)
++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++++|.+.+++. +. +
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-----------------l~--~ 180 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTFLPE-----------------LP--E 180 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCCC-----------------CC--T
T ss_pred CCCcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCCcch-----------------hh--C
Confidence 6666666665 4566666666666 3455554 35566666666665554330 11 5
Q ss_pred CCcEEEEEEcchhhHHhhhcc-hhhhhcceeeeecccCCcccccccccccccccceeeeccc
Q 041248 679 YLEVLELTLRSYDALQFFLSS-NKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSA 739 (813)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~ 739 (813)
+|+.|+++.|.+..++.+... ......|+.|++++| .++.++. .+..+++|+.|+|+++
T Consensus 181 ~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~-~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITHIPE-NILSLDPTCTIILEDN 240 (571)
T ss_dssp TCCEEECCSSCCSSCCCCC--------CCEEEECCSS-CCCCCCG-GGGGSCTTEEEECCSS
T ss_pred CCCEEECcCCCCCchhhHHHhhhcccccceEEecCCC-cceecCH-HHhcCCCCCEEEeeCC
Confidence 566666666555443331000 000011266666653 3444442 3444666666666653
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=1.2e-12 Score=140.99 Aligned_cols=175 Identities=17% Similarity=0.126 Sum_probs=134.2
Q ss_pred eeEEecccccccccccCCCCCceeEEEeeeccccccccchhhc-CCCcccEEEeccCCcccccccC-ccccCCCCCCEEe
Q 041248 520 VRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQ-CMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLD 597 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~ 597 (813)
.+.+++.++.+..+|.. -.+.++.|+++ ++.+..++...|. .+++|++|+|++| .++.++ ..+.++++|++|+
T Consensus 20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls-~N~l~~l~~~~~~~~l~~L~~L~L~~N---~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-LPSYTALLDLS-HNNLSRLRAEWTPTRLTNLHSLLLSHN---HLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCCSSCCSS-CCTTCSEEECC-SSCCCEECTTSSSSCCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCccCcc-CCCCCCEEECC-CCCCCccChhhhhhcccccCEEECCCC---cCCccChhhccCCCCCCEEE
Confidence 35788888888887652 34568999999 6678888888777 9999999999999 888886 5699999999999
Q ss_pred ecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhc
Q 041248 598 ISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLG 676 (813)
Q Consensus 598 l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 676 (813)
|++|.++.+|.. +..+++|++|+|++| .+..++...+..+++|++|++++|.+..++. ..+..+..
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------------~~~~~~~~ 161 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPV------------ELIKDGNK 161 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCG------------GGTC----
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCH------------HHhcCccc
Confidence 999999998764 889999999999999 5677765569999999999999998887641 12223367
Q ss_pred CCCCcEEEEEEcchhhHHhhhcchhhhhc--ceeeeeccc
Q 041248 677 LRYLEVLELTLRSYDALQFFLSSNKLKSC--IRSLFLNKL 714 (813)
Q Consensus 677 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~ 714 (813)
+++|+.|+++.|.+..++... ...++. ++.|+|.++
T Consensus 162 l~~L~~L~L~~N~l~~l~~~~--~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKLPLTD--LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CTTCCEEECCSSCCCCCCHHH--HHHSCHHHHTTEECCSS
T ss_pred CCcCCEEECCCCCCCccCHHH--hhhccHhhcceEEecCC
Confidence 899999999988876543210 111112 466777764
No 119
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.37 E-value=1.5e-11 Score=133.87 Aligned_cols=290 Identities=13% Similarity=0.073 Sum_probs=177.2
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEecCccCHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESP---TSFDCVIWAVVSKDLRLEKIQED 230 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~ 230 (813)
+.++||+.+++.+.+++.. .....+.|+|++|+||||+|+.+++...... ..-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5789999999999998843 4567899999999999999999998762100 11234678888887888899999
Q ss_pred HHHHcCCCCCccCCCCHHHHHHHHHHHh--cCCcEEEEEecccCccc----cccc---ccCCCCCC-CCCcEEEEEcCcc
Q 041248 231 IGKKIGLVDDSWKSKSVEEKALDIFRSL--REKRFVLLLDDIWERVD----LTKM---GIPLSGPK-NTTSKVVFTTRFV 300 (813)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~----~~~~---~~~l~~~~-~~~s~ilvTtR~~ 300 (813)
++.+++...+. ...+..+....+...+ .+++.+||||+++.... .+.+ ........ ..+..+|.||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99998754321 3344666667777776 35689999999975321 1111 11110111 3456778788765
Q ss_pred cccccC------C-CCcceEcCCCCHHHHHHHHHHhhCC---CccCCChhHHHHHHHHHHHhC---CcchHH-HHHHHhh
Q 041248 301 DVCGSM------E-ADKKFQVACLSEEDAWELFRKKVGE---ETLESDHDIVELAQTVAKECG---GLPLAL-ITIGRAM 366 (813)
Q Consensus 301 ~v~~~~------~-~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~~~~~~i~~~c~---GlPLai-~~~~~~l 366 (813)
.....+ . ....+.+++++.++..+++...+.. .. ..++ +..+.+++.++ |.|..+ ..+....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG-VLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT-TBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC-CCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 332111 1 1147899999999999999987532 11 1122 35677888887 999433 3332221
Q ss_pred c-----C--CCCHHHHHHHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhc-cCCCCccccHHHHHHHH-
Q 041248 367 A-----F--KKTAEEWIHAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCC-LYPEDYDILKWDLIDCW- 437 (813)
Q Consensus 367 ~-----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~-~fp~~~~i~~~~li~~w- 437 (813)
. + .-+.+.+..++.... ...+.-++..|+. +.+..+..++ ++.....+....+.+..
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 125566665554332 1234556788988 5666655555 44322244444333322
Q ss_pred ---HHcCCcccccccchHhhHHHHHHHHHHhccccee
Q 041248 438 ---IGEGFLEESDRFSAENQGYYIVGTLVHACLLEEV 471 (813)
Q Consensus 438 ---~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 471 (813)
-..| .. .........+++.|...|++...
T Consensus 320 ~~~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LE----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 1122 11 12345667789999999999874
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=1.6e-12 Score=146.70 Aligned_cols=182 Identities=19% Similarity=0.214 Sum_probs=135.4
Q ss_pred CceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEE
Q 041248 540 PHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCL 619 (813)
Q Consensus 540 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 619 (813)
.+|+.|+++ ++.+..+|..+ +++|++|+|++| .++.+| +.+++|++|++++|.++.+|. +.. +|++|
T Consensus 59 ~~L~~L~Ls-~n~L~~lp~~l---~~~L~~L~Ls~N---~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLN-RLNLSSLPDNL---PPQITVLEITQN---ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECC-SSCCSCCCSCC---CTTCSEEECCSS---CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred CCccEEEeC-CCCCCccCHhH---cCCCCEEECcCC---CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEE
Confidence 378999999 55677888764 378999999999 888888 567899999999999999998 665 99999
Q ss_pred eccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHHhhhcc
Q 041248 620 NLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQFFLSS 699 (813)
Q Consensus 620 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 699 (813)
++++| .+..+|. .+++|++|++++|.+.+++ . .+++|+.|+++.|.+..++. +.
T Consensus 126 ~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp----------------~---~l~~L~~L~Ls~N~L~~lp~-l~- 179 (571)
T 3cvr_A 126 DVDNN-QLTMLPE----LPALLEYINADNNQLTMLP----------------E---LPTSLEVLSVRNNQLTFLPE-LP- 179 (571)
T ss_dssp ECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCC----------------C---CCTTCCEEECCSSCCSCCCC-CC-
T ss_pred ECCCC-cCCCCCC----cCccccEEeCCCCccCcCC----------------C---cCCCcCEEECCCCCCCCcch-hh-
Confidence 99999 5777886 6789999999998877653 0 46789999999888766554 21
Q ss_pred hhhhhcceeeeecccCCccccccccccccccc-------ceeeecccCccceeeecccccCCCCCCcccccCcceEeecc
Q 041248 700 NKLKSCIRSLFLNKLGGTKSIHATAFSDLKHL-------NELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMER 772 (813)
Q Consensus 700 ~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L-------~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 772 (813)
++|+.|+|++| .++.++. +.+ +| +.|++++ +.++.+ +.. ...+++|+.|+|++
T Consensus 180 ----~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L~Ls~-N~l~~l-p~~---------l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 180 ----ESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFFRCRE-NRITHI-PEN---------ILSLDPTCTIILED 239 (571)
T ss_dssp ----TTCCEEECCSS-CCSSCCC--CC----------CCEEEECCS-SCCCCC-CGG---------GGGSCTTEEEECCS
T ss_pred ----CCCCEEECcCC-CCCchhh--HHH--hhhcccccceEEecCC-Ccceec-CHH---------HhcCCCCCEEEeeC
Confidence 58899999885 4555552 332 56 8888887 345543 222 23688899999988
Q ss_pred CcCCCccc
Q 041248 773 CHKLKDLT 780 (813)
Q Consensus 773 c~~l~~l~ 780 (813)
|+....+|
T Consensus 240 N~l~~~~p 247 (571)
T 3cvr_A 240 NPLSSRIR 247 (571)
T ss_dssp SSCCHHHH
T ss_pred CcCCCcCH
Confidence 77544444
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.6e-12 Score=123.30 Aligned_cols=130 Identities=23% Similarity=0.239 Sum_probs=78.8
Q ss_pred cceeEEeccccccc--ccccC-CCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccc-cCccccCCCCC
Q 041248 518 ENVRRLSLMQNQIE--ILSEV-PTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLK-LPFGMSKLGSL 593 (813)
Q Consensus 518 ~~~~~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-lp~~i~~L~~L 593 (813)
+.++.|++++|.+. .++.. ..+++|+.|+++ ++.+..+ ..+..+++|++|++++| .+.. +|..+.++++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISV--SNLPKLPKLKKLELSEN---RIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEE-SSCCCCC--SSCCCCSSCCEEEEESC---CCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCc-CCCCCCh--hhhccCCCCCEEECcCC---cCchHHHHHHhhCCCC
Confidence 35666666666665 45443 556666666666 3345555 22566666666666666 5555 55555556666
Q ss_pred CEEeecCCCCcccc--hhhcCCCCCcEEeccCcccccccch---hhhcCCCCCceeeccccccCCC
Q 041248 594 QLLDISHAGIRELP--EELKLLVNLKCLNLRWTRMLNKIPR---LLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 594 ~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
++|++++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++..|.....
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 66666666666655 45666666666666666 3455554 2366666666666666554443
No 122
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.36 E-value=5.4e-12 Score=147.08 Aligned_cols=245 Identities=19% Similarity=0.108 Sum_probs=140.1
Q ss_pred ceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEee
Q 041248 519 NVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDI 598 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l 598 (813)
.++.|.+..+.+..++. ..++.|+.+.+.. +.....+. +..+++|++|++++|........|..+..+.+|++|++
T Consensus 329 ~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~-n~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 329 GWQHLELVNCKFGQFPT-LKLKSLKRLTFTS-NKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp CCSEEEEESCEESSCCC-CBCTTCCEEEEES-CCSCCBCC--CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred hhhhhhcccccccCcCc-ccchhhhhccccc-ccCCCCcc--cccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 44455555554443321 2344555555552 22222222 33566677777776621111223445556667777777
Q ss_pred cCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCC
Q 041248 599 SHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLR 678 (813)
Q Consensus 599 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 678 (813)
..+.+..++..+..+++|+.+++.++......+...+..+++|+.++++.|.+.... ...+..++
T Consensus 405 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~---------------~~~~~~~~ 469 (635)
T 4g8a_A 405 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF---------------NGIFNGLS 469 (635)
T ss_dssp CSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC---------------TTTTTTCT
T ss_pred cccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccc---------------ccccccch
Confidence 777666666666677777777777665444444444666777777777765554332 13355667
Q ss_pred CCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCC
Q 041248 679 YLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSE 758 (813)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 758 (813)
+|+.|+++.|..... ........+++|+.|+|++| .++.+....|.++++|+.|+|++ +.++.+.+..+.
T Consensus 470 ~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~------- 539 (635)
T 4g8a_A 470 SLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYK------- 539 (635)
T ss_dssp TCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGT-------
T ss_pred hhhhhhhhhcccccc-cCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHh-------
Confidence 777777776543210 01122233457888888875 45555445677788888888887 455554443333
Q ss_pred cccccCcceEeeccCcCCCccc--chhcC-CCCceEeeec
Q 041248 759 PFVFRSLHRVTMERCHKLKDLT--FLVCA-PSLKSLSLYG 795 (813)
Q Consensus 759 ~~~l~~L~~L~l~~c~~l~~l~--~l~~l-~~L~~L~l~~ 795 (813)
.+++|+.|+|+++. +..++ .+..+ ++|+.|++++
T Consensus 540 --~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 540 --CLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp --TCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTT
T ss_pred --CCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeC
Confidence 67788888888865 44443 35555 5788888865
No 123
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=3.7e-11 Score=130.68 Aligned_cols=293 Identities=14% Similarity=0.088 Sum_probs=171.8
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
..|+||+.+++.+.+++.. .....+.|+|++|+||||||+.+++........-...+|+.+....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999998873 456789999999999999999999876211110235678887766677888888888
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhc--CCcEEEEEecccCcc------cccccccCCCCCCCCCcEEEEEcCccccccc
Q 041248 234 KIGLVDDSWKSKSVEEKALDIFRSLR--EKRFVLLLDDIWERV------DLTKMGIPLSGPKNTTSKVVFTTRFVDVCGS 305 (813)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~~ 305 (813)
.++...+. ...+..+....+...+. +++.+||+|+++... .+..+...+......+..+|+||+.......
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 87654321 23345565666666664 458999999996532 1222211110002335667778776543222
Q ss_pred CC-------CCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhC---CcchHHHHH-HHhhc-----C-
Q 041248 306 ME-------ADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECG---GLPLALITI-GRAMA-----F- 368 (813)
Q Consensus 306 ~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPLai~~~-~~~l~-----~- 368 (813)
+. ....+++++++.++..+++...+.... ....-..++.+.+++.++ |.|..+..+ ..... .
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~ 257 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKD 257 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 21 124799999999999999998653110 001111356677777777 999844333 22211 1
Q ss_pred -CCCHHHHHHHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhccCCC-C-ccccHHHHHHHH--HH--cC
Q 041248 369 -KKTAEEWIHAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLYPE-D-YDILKWDLIDCW--IG--EG 441 (813)
Q Consensus 369 -~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~-~-~~i~~~~li~~w--~a--~g 441 (813)
.-+.+.+..++.... ...+.-++..+|. ..+..+..++...+ + ..+....+.+.. ++ .|
T Consensus 258 ~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 258 TKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp SSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 124555555443321 2245556778887 56666555552211 1 123333332211 11 12
Q ss_pred CcccccccchHhhHHHHHHHHHHhccccee
Q 041248 442 FLEESDRFSAENQGYYIVGTLVHACLLEEV 471 (813)
Q Consensus 442 ~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 471 (813)
+. .........+++.|...+++...
T Consensus 324 -~~----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 -VE----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp -CC----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred -CC----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11 11224566789999999999763
No 124
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.33 E-value=1.8e-12 Score=149.83 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=24.6
Q ss_pred cccCcceEeeccCcC-CCc--ccchh-cCCCCceEeeecCc
Q 041248 761 VFRSLHRVTMERCHK-LKD--LTFLV-CAPSLKSLSLYGCN 797 (813)
Q Consensus 761 ~l~~L~~L~l~~c~~-l~~--l~~l~-~l~~L~~L~l~~c~ 797 (813)
.+++|++|+++.|.. +.. +..++ .+++|+.|++++|.
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 578888888877653 222 22333 47888888888775
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.33 E-value=2.3e-12 Score=148.85 Aligned_cols=278 Identities=14% Similarity=0.146 Sum_probs=146.0
Q ss_pred cceeEEecccccccc-----ccc-CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCc-ccccccCccccCC
Q 041248 518 ENVRRLSLMQNQIEI-----LSE-VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGH-VKVLKLPFGMSKL 590 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~lp~~i~~L 590 (813)
+.++.|++++|.+.. ++. +..+++|++|++++ +.+..++ ..+..+++|+.|+++++.. ......+..+..+
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD-FEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS-CBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC-ccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 456667776666542 111 24567777777774 3444555 3366667777777764310 0111233445556
Q ss_pred CCCCEEeecCCCCcccchhhcCCCCCcEEeccCccccccc-chhhhcCCCCCceeeccccccCC---------CCC-CCc
Q 041248 591 GSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKI-PRLLISNSSWLRVLRMFAIGFEN---------SEE-PSE 659 (813)
Q Consensus 591 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~---------~~~-~~~ 659 (813)
++|+.|+++++....+|..+..+++|++|++++|. +... ....+..+++|++|++..+ +.. .+. ..+
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEE
Confidence 66666666665555666666667777777777764 3211 1122466666776666521 110 000 000
Q ss_pred ccc-----------ccCCccchhHH-hhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecc---cCCcccccc--
Q 041248 660 DSV-----------LIGGGEVLVHE-LLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNK---LGGTKSIHA-- 722 (813)
Q Consensus 660 ~~~-----------~~~~~~~~~~~-l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~~~~l~~-- 722 (813)
... ........+.. ...+++|+.|++..+...... +......+++|+.|++++ |+.++..+.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES-LESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH-HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH-HHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 000 00011111222 345778888888666653211 111112245788888874 334443211
Q ss_pred ---cccccccccceeeeccc----------------CccceeeecccccCC--CCCCcccccCcceEeeccCcCCCc--c
Q 041248 723 ---TAFSDLKHLNELCIRSA----------------VELEELKVDYTEIAP--KRSEPFVFRSLHRVTMERCHKLKD--L 779 (813)
Q Consensus 723 ---~~l~~l~~L~~L~l~~~----------------~~l~~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~--l 779 (813)
..+..+++|+.|+++.| +.++.+.+.....++ .+.....+++|++|+|++|+ ++. +
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~ 505 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAI 505 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHH
Confidence 01345778888888533 335554444333211 01111367899999999998 443 4
Q ss_pred cc-hhcCCCCceEeeecCchhhhh
Q 041248 780 TF-LVCAPSLKSLSLYGCNAMEEI 802 (813)
Q Consensus 780 ~~-l~~l~~L~~L~l~~c~~l~~i 802 (813)
+. ...+++|++|++++|. ++..
T Consensus 506 ~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB-CCTT
T ss_pred HHHHHhcCccCeeECcCCc-CCHH
Confidence 43 3578999999999998 5543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=3.3e-12 Score=121.07 Aligned_cols=136 Identities=24% Similarity=0.183 Sum_probs=108.1
Q ss_pred CCCCceeEEEeeeccccc--cccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcc-cchhhcCC
Q 041248 537 PTCPHLLTLFLDFNYKLE--MITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRE-LPEELKLL 613 (813)
Q Consensus 537 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~-lp~~~~~l 613 (813)
...++|+.|++++ +.+. .+|.. +..+++|++|++++| .++.+ ..++.+++|++|++++|.+.. +|..+.++
T Consensus 21 ~~~~~L~~L~l~~-n~l~~~~i~~~-~~~l~~L~~L~l~~n---~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 21 RTPAAVRELVLDN-CKSNDGKIEGL-TAEFVNLEFLSLINV---GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp SCTTSCSEEECCS-CBCBTTBCSSC-CGGGGGCCEEEEESS---CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred CCcccCCEEECCC-CCCChhhHHHH-HHhCCCCCEEeCcCC---CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 3458899999994 4566 67765 788999999999999 77777 688999999999999999988 77778889
Q ss_pred CCCcEEeccCcccccccch-hhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchh
Q 041248 614 VNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYD 691 (813)
Q Consensus 614 ~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 691 (813)
++|++|++++| .+..+|. ..++.+++|++|++++|.+...+ ......+..+++|+.|++..|...
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~------------~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN------------DYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST------------THHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH------------HHHHHHHHhCccCcEecCCCCChh
Confidence 99999999999 5777762 23889999999999988877643 111235778888888888766543
No 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=9.8e-11 Score=127.46 Aligned_cols=291 Identities=13% Similarity=0.042 Sum_probs=176.5
Q ss_pred CcccchhHHHHHHHHHHhc----CCce--EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE----ESVG--IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDI 231 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (813)
+.++||+.+++++.+++.. .... .+.|+|++|+|||||++.+++... ... -..++|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~-~~~-~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK-DKT-TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT-TSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh-hhc-CeeEEEEeCccCCCHHHHHHHH
Confidence 5689999999999998864 3334 899999999999999999998872 111 2356778877777888999999
Q ss_pred HHHcCCCCCccCCCCHHHHHHHHHHHhc--CCcEEEEEecccCc--ccccccccCCCCCCC---CCcEEEEEcCcccccc
Q 041248 232 GKKIGLVDDSWKSKSVEEKALDIFRSLR--EKRFVLLLDDIWER--VDLTKMGIPLSGPKN---TTSKVVFTTRFVDVCG 304 (813)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~---~~s~ilvTtR~~~v~~ 304 (813)
+..++...+. ...+..+....+...+. +++.+||||+++.. ..+..+...+..... .+..||++|+......
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 9988754321 23345566666666554 56899999999653 223333222201111 4667888877654322
Q ss_pred cCC-------CCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHh---------CCcchHHHHHHHh-hc
Q 041248 305 SME-------ADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKEC---------GGLPLALITIGRA-MA 367 (813)
Q Consensus 305 ~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~GlPLai~~~~~~-l~ 367 (813)
... ....+++++++.++..+++...+.... ....--.+..+.|++.+ +|.|..+..+... ..
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 221 123699999999999999988764210 00011135678899999 7887654433322 11
Q ss_pred -----CC--CCHHHHHHHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhccCC---CCccccHHHHHHHH
Q 041248 368 -----FK--KTAEEWIHAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLYP---EDYDILKWDLIDCW 437 (813)
Q Consensus 368 -----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp---~~~~i~~~~li~~w 437 (813)
.. -+.+....+...... ..+.-.+..|+. +.+.++..++.+. .+..+....+...+
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~ 318 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLF-------------GISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESY 318 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSC-------------CCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhh-------------hhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHH
Confidence 11 133333333222111 122333556777 6777766666543 22145555555544
Q ss_pred HH----cCCcccccccchHhhHHHHHHHHHHhccccee
Q 041248 438 IG----EGFLEESDRFSAENQGYYIVGTLVHACLLEEV 471 (813)
Q Consensus 438 ~a----~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 471 (813)
.. .|.. .-.......++++|...+++...
T Consensus 319 ~~~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 319 KIVCEEYGER-----PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEe
Confidence 22 2211 11234566789999999999874
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.4e-12 Score=123.09 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=105.6
Q ss_pred cccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhh-c
Q 041248 533 LSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEEL-K 611 (813)
Q Consensus 533 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~-~ 611 (813)
.+.+..+++|+.|+++ ++.+..++. +....++|++|++++| .++.+ +.++.+++|++|++++|.++.+|..+ .
T Consensus 12 ~~~~~~~~~L~~L~l~-~n~l~~i~~-~~~~~~~L~~L~Ls~N---~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLR-GYKIPVIEN-LGATLDQFDAIDFSDN---EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp SCEEECTTSCEEEECT-TSCCCSCCC-GGGGTTCCSEEECCSS---CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred HHhcCCcCCceEEEee-CCCCchhHH-hhhcCCCCCEEECCCC---CCCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence 3445677888888888 446667754 2333448999999999 77777 57888899999999999999888665 8
Q ss_pred CCCCCcEEeccCcccccccch-hhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcch
Q 041248 612 LLVNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSY 690 (813)
Q Consensus 612 ~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 690 (813)
.+++|++|++++| .+..+|. ..++.+++|++|++++|.+...+. .....+..+++|+.|+++.|..
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~------------~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKH------------YRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT------------HHHHHHHHCTTCSEETTEECCH
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHh------------HHHHHHHHCCccceeCCCcCCH
Confidence 8899999999988 5677776 227888999999999887765431 1122467888888888887775
Q ss_pred hh
Q 041248 691 DA 692 (813)
Q Consensus 691 ~~ 692 (813)
..
T Consensus 153 ~~ 154 (176)
T 1a9n_A 153 KE 154 (176)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=1.7e-12 Score=139.80 Aligned_cols=252 Identities=15% Similarity=0.092 Sum_probs=167.5
Q ss_pred Eecccccccc-cccCC-CCCceeEEEeeeccccccccc----hhhcCCC-cccEEEeccCCccccccc-CccccCC----
Q 041248 523 LSLMQNQIEI-LSEVP-TCPHLLTLFLDFNYKLEMITD----GFFQCMP-SLKVLKMSNCGHVKVLKL-PFGMSKL---- 590 (813)
Q Consensus 523 l~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~l-p~~i~~L---- 590 (813)
..++.|.+.. ++.+. ..++|+.|+++ ++.+...+. ..|..++ +|++|+|++| .++.. +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N---~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLS-LNNLYSISTVELIQAFANTPASVTSLNLSGN---SLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTCCTTCCEEECCSS---CGGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHhCCCCceEEEcc-CCCCChHHHHHHHHHHHhCCCceeEEECcCC---CCCHHHHHHHHHHHhcc
Confidence 3455666654 34443 34559999999 556877776 6688888 9999999999 77655 4455554
Q ss_pred -CCCCEEeecCCCCcccchh-----hcCC-CCCcEEeccCcccccccchhhh----cC-CCCCceeeccccccCCCCCCC
Q 041248 591 -GSLQLLDISHAGIRELPEE-----LKLL-VNLKCLNLRWTRMLNKIPRLLI----SN-SSWLRVLRMFAIGFENSEEPS 658 (813)
Q Consensus 591 -~~L~~L~l~~~~i~~lp~~-----~~~l-~~L~~L~l~~~~~l~~lp~~~i----~~-L~~L~~L~l~~~~~~~~~~~~ 658 (813)
++|++|++++|.++..+.. +..+ ++|++|++++|. +...+...+ .. .++|++|++++|.+....
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--- 154 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--- 154 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC---
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH---
Confidence 8999999999999865543 5555 899999999994 666654323 34 369999999988776431
Q ss_pred ccccccCCccchhHHhhcCC-CCcEEEEEEcchhhHH--hhhcchhhh-hcceeeeecccCCcccccc----ccccc-cc
Q 041248 659 EDSVLIGGGEVLVHELLGLR-YLEVLELTLRSYDALQ--FFLSSNKLK-SCIRSLFLNKLGGTKSIHA----TAFSD-LK 729 (813)
Q Consensus 659 ~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~~~l~~----~~l~~-l~ 729 (813)
.......+..++ +|+.|+++.|.+.... .+....... ++|+.|++++|. +..... ..+.. .+
T Consensus 155 --------~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~ 225 (362)
T 3goz_A 155 --------SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPN 225 (362)
T ss_dssp --------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCT
T ss_pred --------HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCC
Confidence 122345566676 9999999988875422 222222222 489999999864 333111 12333 46
Q ss_pred ccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcC-------CCccc-chhcCCCCceEeeecCc
Q 041248 730 HLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHK-------LKDLT-FLVCAPSLKSLSLYGCN 797 (813)
Q Consensus 730 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~-------l~~l~-~l~~l~~L~~L~l~~c~ 797 (813)
+|+.|+++++ .+....+..+. .....+++|+.|++++|.. +..++ .+..+++|+.|++++++
T Consensus 226 ~L~~L~Ls~N-~l~~~~~~~l~-----~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 226 HVVSLNLCLN-CLHGPSLENLK-----LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TCCEEECCSS-CCCCCCHHHHH-----HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CceEEECcCC-CCCcHHHHHHH-----HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 9999999985 45432221111 0113678999999999861 12222 34567889999998876
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=2.1e-12 Score=151.43 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=94.8
Q ss_pred cceeEEeccccccccccc-CCCCCceeEEEeee----ccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCC
Q 041248 518 ENVRRLSLMQNQIEILSE-VPTCPHLLTLFLDF----NYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGS 592 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~ 592 (813)
+.+++|++..+.+...+. .....+|+.+.+.. ++.+. +++..|..++.|++|+|++| .+..+|..+.++.+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n---~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL---QIFNISANIFKYDF 248 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS---CCSCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC---CCCCCChhhcCCCC
Confidence 457788887777765432 22233333333321 22332 45556888999999999999 88889988889999
Q ss_pred CCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhH
Q 041248 593 LQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVH 672 (813)
Q Consensus 593 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (813)
|++|+|++|.|+.+|..+++|++|++|+|++| .+..+|.. +++|++|++|++++|.+..++ .
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~lp----------------~ 310 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNMVTTLP----------------W 310 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSCCCCCC----------------S
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCCCCccC----------------h
Confidence 99999999999999999999999999999999 46788887 899999999999988776554 3
Q ss_pred HhhcCCCCcEEEEEEcchhh
Q 041248 673 ELLGLRYLEVLELTLRSYDA 692 (813)
Q Consensus 673 ~l~~L~~L~~L~l~~~~~~~ 692 (813)
.|+.|++|+.|+++.|.+..
T Consensus 311 ~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp STTSCTTCCCEECTTSCCCS
T ss_pred hhhcCCCccEEeCCCCccCC
Confidence 47888999999998887753
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=3.6e-12 Score=121.81 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=111.6
Q ss_pred cCccceeEEecccccccccccCCCCC-ceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccc-cCCCC
Q 041248 515 EGWENVRRLSLMQNQIEILSEVPTCP-HLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGM-SKLGS 592 (813)
Q Consensus 515 ~~~~~~~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i-~~L~~ 592 (813)
.....++.|++.+|.+..++.+..+. +|+.|+++ ++.+..++ .|..+++|++|++++| .++.+|+.+ +.+++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls-~N~l~~~~--~l~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFS-DNEIRKLD--GFPLLRRLKTLLVNNN---RICRIGEGLDQALPD 89 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECC-SSCCCEEC--CCCCCSSCCEEECCSS---CCCEECSCHHHHCTT
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECC-CCCCCccc--ccccCCCCCEEECCCC---cccccCcchhhcCCC
Confidence 34458999999999999887766655 99999999 55677773 3889999999999999 898888665 89999
Q ss_pred CCEEeecCCCCcccch--hhcCCCCCcEEeccCcccccccchh---hhcCCCCCceeecccccc
Q 041248 593 LQLLDISHAGIRELPE--ELKLLVNLKCLNLRWTRMLNKIPRL---LISNSSWLRVLRMFAIGF 651 (813)
Q Consensus 593 L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~~ 651 (813)
|++|++++|.+..+|. .+..+++|++|++++|+ +..+|.. +++.+++|++|++..|..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999999999997 79999999999999994 6778874 588999999999987654
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.29 E-value=8.2e-13 Score=152.76 Aligned_cols=126 Identities=19% Similarity=0.129 Sum_probs=80.0
Q ss_pred cceeEEeccccccccc--ccCC-CCCceeEEEeeeccccccc-cchhhcCCCcccEEEeccCCcccccc-----cCcccc
Q 041248 518 ENVRRLSLMQNQIEIL--SEVP-TCPHLLTLFLDFNYKLEMI-TDGFFQCMPSLKVLKMSNCGHVKVLK-----LPFGMS 588 (813)
Q Consensus 518 ~~~~~l~l~~~~~~~l--~~~~-~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-----lp~~i~ 588 (813)
+.+++|++.++.+... ..+. .+++|++|++++|..+... ...++..+++|++|++++| .++. ++....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~---~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES---DVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC---EEECCCGGGGGGSCT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC---ccCCcchHHHHHHhh
Confidence 3677788877765432 2222 5778888888866444431 1233557888888888888 4432 333334
Q ss_pred CCCCCCEEeecCCC--Cc--ccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeecc
Q 041248 589 KLGSLQLLDISHAG--IR--ELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMF 647 (813)
Q Consensus 589 ~L~~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 647 (813)
.+++|++|++++|. +. .++.-+.++++|++|++++|..+..+|.. +.++++|++|.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTG 243 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECS
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccc
Confidence 66788888888875 21 23333455788888888887656666664 6777777777754
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=4.4e-12 Score=117.53 Aligned_cols=121 Identities=26% Similarity=0.226 Sum_probs=56.0
Q ss_pred ceeEEeccccccc--cccc-CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccc-cCccccCCCCCC
Q 041248 519 NVRRLSLMQNQIE--ILSE-VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLK-LPFGMSKLGSLQ 594 (813)
Q Consensus 519 ~~~~l~l~~~~~~--~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-lp~~i~~L~~L~ 594 (813)
+++.|++++|.+. .++. +..+++|+.|+++ ++.+..+ ..+..+++|++|++++| .++. +|..++.+++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~l~~L~~L~Ls~n---~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSI--ANLPKLNKLKKLELSDN---RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECT-TSCCCCC--TTCCCCTTCCEEECCSS---CCCSCTHHHHHHCTTCC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECc-CCCCCCc--hhhhcCCCCCEEECCCC---cccchHHHHhhhCCCCC
Confidence 4555555555554 3332 2444555555554 2233333 22444555555555555 4443 344444445555
Q ss_pred EEeecCCCCcccc--hhhcCCCCCcEEeccCcccccccch---hhhcCCCCCceeec
Q 041248 595 LLDISHAGIRELP--EELKLLVNLKCLNLRWTRMLNKIPR---LLISNSSWLRVLRM 646 (813)
Q Consensus 595 ~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l 646 (813)
+|++++|.++.+| ..+..+++|++|++++| .+..+|. ..++.+++|++|++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 5555555554443 44445555555555554 2344433 22444555554444
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.26 E-value=2.8e-12 Score=148.27 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=23.3
Q ss_pred cccCcceEeeccCcCCCc--ccchhc-CCCCceEeeecCc
Q 041248 761 VFRSLHRVTMERCHKLKD--LTFLVC-APSLKSLSLYGCN 797 (813)
Q Consensus 761 ~l~~L~~L~l~~c~~l~~--l~~l~~-l~~L~~L~l~~c~ 797 (813)
.+++|+.|++++ .+.. ++.++. +++|+.|++++|.
T Consensus 430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC
Confidence 567788888865 3333 233443 7888888888876
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=3.2e-11 Score=115.36 Aligned_cols=128 Identities=20% Similarity=0.306 Sum_probs=101.8
Q ss_pred eeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCcc-ccCCCCCCEEee
Q 041248 520 VRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFG-MSKLGSLQLLDI 598 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~-i~~L~~L~~L~l 598 (813)
.+.+++.++.+..+|. ...++|+.|+++ ++.+..++...|..+++|++|++++| .++.+|.. +.++++|++|++
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSQN---QIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS---CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeC-CCcccEeCHHHhcCcccccEEECCCC---cceEeChhHccCCCccCEEEC
Confidence 3467777777777653 334788999998 55677888777888999999999999 78887654 688899999999
Q ss_pred cCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 599 SHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 599 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
++|.++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++++|.+..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999888775 578899999999988 5778888766888999999998876654
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=7.2e-12 Score=116.07 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=99.5
Q ss_pred CCCceeEEEeeeccccc--cccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcc-cchhhcCCC
Q 041248 538 TCPHLLTLFLDFNYKLE--MITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRE-LPEELKLLV 614 (813)
Q Consensus 538 ~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~-lp~~~~~l~ 614 (813)
..++|+.|++++ +.+. .+|.. +..+++|++|++++| .++.+ ..++++++|++|++++|.++. +|..+..++
T Consensus 15 ~~~~l~~L~l~~-n~l~~~~~~~~-~~~l~~L~~L~l~~n---~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 15 TPSDVKELVLDN-SRSNEGKLEGL-TDEFEELEFLSTINV---GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp CGGGCSEEECTT-CBCBTTBCCSC-CTTCTTCCEEECTTS---CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CCccCeEEEccC-CcCChhHHHHH-HhhcCCCcEEECcCC---CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 457899999994 4565 66664 788999999999999 77777 678889999999999999987 787788899
Q ss_pred CCcEEeccCcccccccc--hhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEE
Q 041248 615 NLKCLNLRWTRMLNKIP--RLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLEL 685 (813)
Q Consensus 615 ~L~~L~l~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 685 (813)
+|++|++++| .+..+| .. ++.+++|++|++++|.+.+.+ ......+..+++|+.|++
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~------------~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNLN------------DYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGST------------THHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccchH------------HHHHHHHHHCCCcccccC
Confidence 9999999998 467665 44 889999999999988776543 111134677777777754
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=2.3e-11 Score=117.99 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=101.4
Q ss_pred eEEecccccccccccCCCCCceeEEEeeeccccccccc-hhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEee
Q 041248 521 RRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITD-GFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDI 598 (813)
Q Consensus 521 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l 598 (813)
+.++++++.+..+|.. -.++|+.|+++ ++.+..++. .+|..+++|++|+|++| .++.+ |..+.++++|++|+|
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~-~n~i~~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLN-DNELGRISSDGLFGRLPHLVKLELKRN---QLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECC-SCCCCSBCCSCSGGGCTTCCEEECCSS---CCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECC-CCcCCccCCccccccCCCCCEEECCCC---CCCCcCHhHcCCcccCCEEEC
Confidence 5778888888877652 23489999998 556777765 35888999999999999 78777 678889999999999
Q ss_pred cCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 599 SHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 599 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
++|.++.+|.. +..+++|++|++++| .+..+++..++.+++|++|++.+|.+..
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99999887765 788999999999998 4565544448889999999999887654
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=3.9e-11 Score=116.33 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=88.8
Q ss_pred eEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEeec
Q 041248 521 RRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDIS 599 (813)
Q Consensus 521 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~ 599 (813)
+.++++++.+..+|.. -.++|+.|+++ ++.+..+|. .|..+++|++|+|++| .++.++ ..+.++++|++|+|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~-~n~i~~ip~-~~~~l~~L~~L~Ls~N---~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLD-GNQFTLVPK-ELSNYKHLTLIDLSNN---RISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECC-SSCCCSCCG-GGGGCTTCCEEECCSS---CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECC-CCcCchhHH-HhhcccCCCEEECCCC---cCCEeCHhHccCCCCCCEEECC
Confidence 3566677777766542 23577888887 555667774 3777888888888888 677665 457778888888888
Q ss_pred CCCCcccch-hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccC
Q 041248 600 HAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFE 652 (813)
Q Consensus 600 ~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 652 (813)
+|.++.+|. .+..+++|++|++++| .+..+|.+.+..+++|++|++.+|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 887777765 4777788888888877 467777766777778888877776554
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=2.5e-11 Score=117.67 Aligned_cols=125 Identities=20% Similarity=0.250 Sum_probs=106.2
Q ss_pred eEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccch-hhcCCCCCcEEec
Q 041248 543 LTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPE-ELKLLVNLKCLNL 621 (813)
Q Consensus 543 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l 621 (813)
++++++ ++.+..+|..+ .++|++|++++| .++.+|..+.++.+|++|+|++|.|+.+|. .+..+++|++|++
T Consensus 13 ~~l~~~-~~~l~~ip~~~---~~~l~~L~L~~n---~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCS-NKGLKVLPKGI---PRDVTELYLDGN---QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECT-TSCCSSCCSCC---CTTCCEEECCSS---CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcC-CCCCCcCCCCC---CCCCCEEECCCC---cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 467777 56788888763 368999999999 899999999999999999999999998875 4899999999999
Q ss_pred cCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcch
Q 041248 622 RWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSY 690 (813)
Q Consensus 622 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 690 (813)
++| .+..+|...+..+++|++|++++|.+..++. ..+..+++|+.|++..|..
T Consensus 86 s~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 86 SYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE---------------GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT---------------TTTTTCTTCCEEECCSSCE
T ss_pred CCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh---------------hhhhcCccccEEEeCCCCe
Confidence 999 5788887669999999999999998876542 3467788999999987765
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=1e-11 Score=141.06 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=94.6
Q ss_pred EecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCC
Q 041248 523 LSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAG 602 (813)
Q Consensus 523 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 602 (813)
+.+..|.+..++. ..|++|+++ ++.+..+|. |..+++|++|+|++| .++.+|..++++++|++|+|++|.
T Consensus 428 l~l~~n~i~~l~~----~~L~~L~Ls-~n~l~~lp~--~~~l~~L~~L~Ls~N---~l~~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 428 KFLLENSVLKMEY----ADVRVLHLA-HKDLTVLCH--LEQLLLVTHLDLSHN---RLRALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp HHHHHHHHHHHHH----TTCSEEECT-TSCCSSCCC--GGGGTTCCEEECCSS---CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred hhhhcccccccCc----cCceEEEec-CCCCCCCcC--ccccccCcEeecCcc---cccccchhhhcCCCCCEEECCCCC
Confidence 3444455544432 247888888 556777775 788889999999999 788888889999999999999998
Q ss_pred CcccchhhcCCCCCcEEeccCccccccc--chhhhcCCCCCceeeccccccCCCC
Q 041248 603 IRELPEELKLLVNLKCLNLRWTRMLNKI--PRLLISNSSWLRVLRMFAIGFENSE 655 (813)
Q Consensus 603 i~~lp~~~~~l~~L~~L~l~~~~~l~~l--p~~~i~~L~~L~~L~l~~~~~~~~~ 655 (813)
++.+| .++.+++|++|++++| .+..+ |.. ++.|++|++|++++|.+.+.+
T Consensus 498 l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 498 LENVD-GVANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc
Confidence 88888 8888999999999888 56766 665 888999999999988877654
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=1.9e-10 Score=116.29 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=114.7
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++||+..++.+..++.... ...+.|+|++|+||||+|+.+++... ....+.. + ....... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~--~----~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA--T----PCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS--S----CCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC--C----CCcccHH-HHHHhccCC
Confidence 468999999999999987653 45899999999999999999988762 1111100 0 0000000 011110000
Q ss_pred CCCC--ccCCCCHHHHHHHHHHHh-----cCCcEEEEEecccC--cccccccccCCCCCCCCCcEEEEEcCcccccc--c
Q 041248 237 LVDD--SWKSKSVEEKALDIFRSL-----REKRFVLLLDDIWE--RVDLTKMGIPLSGPKNTTSKVVFTTRFVDVCG--S 305 (813)
Q Consensus 237 ~~~~--~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~~--~ 305 (813)
.... .............+.+.+ .+++.+||+||++. ...+..+...+ .....+..+|+||+...... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l-~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL-EEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHH-HSCCTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHH-hcCCCceEEEEEeCChHhCCHHH
Confidence 0000 000001111222222222 35689999999964 33344443333 23345678888887544211 1
Q ss_pred CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHh
Q 041248 306 MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRA 365 (813)
Q Consensus 306 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 365 (813)
......+++++++.++..+++...+.......+ .+..+.|++.|+|.|..+..+...
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 122467899999999999999987753321112 356789999999999988776543
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=2.8e-11 Score=141.88 Aligned_cols=109 Identities=25% Similarity=0.287 Sum_probs=58.7
Q ss_pred CCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCC
Q 041248 537 PTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNL 616 (813)
Q Consensus 537 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L 616 (813)
..+++|++|+++ ++.+..+|..++ .+++|++|+|++| .++.+|..+++|.+|++|+|++|.|+.+|..+++|++|
T Consensus 221 ~~l~~L~~L~Ls-~n~l~~l~~~~~-~l~~L~~L~Ls~N---~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 221 YDDQLWHALDLS-NLQIFNISANIF-KYDFLTRLYLNGN---SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp -CCCCCCEEECT-TSCCSCCCGGGG-GCCSCSCCBCTTS---CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred ccCCCCcEEECC-CCCCCCCChhhc-CCCCCCEEEeeCC---cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 445555555555 333445554422 4555555555555 45555555555555555555555555555555555555
Q ss_pred cEEeccCcccccccchhhhcCCCCCceeeccccccC
Q 041248 617 KCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFE 652 (813)
Q Consensus 617 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 652 (813)
++|+|++| .+..+|.+ |++|++|++|++++|.+.
T Consensus 296 ~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 296 KYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred CEEECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 55555555 34555554 555555555555555544
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=3.2e-11 Score=116.88 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=104.7
Q ss_pred eEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCcc--ccCCCCCCEEeecCCCCccc-chhhcCCCCCcEE
Q 041248 543 LTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFG--MSKLGSLQLLDISHAGIREL-PEELKLLVNLKCL 619 (813)
Q Consensus 543 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~--i~~L~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L 619 (813)
++++++ .+.+..+|..++ .+|++|++++| .++.+|.. ++.+++|++|+|++|.++.+ |..+..+++|++|
T Consensus 11 ~~l~~s-~~~l~~ip~~~~---~~l~~L~l~~n---~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCT-GRGLKEIPRDIP---LHTTELLLNDN---ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECT-TSCCSSCCSCCC---TTCSEEECCSC---CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcC-CCCcCcCccCCC---CCCCEEECCCC---cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 678888 567888887633 38999999999 88888754 89999999999999999988 6779999999999
Q ss_pred eccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchh
Q 041248 620 NLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYD 691 (813)
Q Consensus 620 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 691 (813)
++++| .+..+|...++.+++|++|++++|.+.+.. ...+..+++|+.|+++.|...
T Consensus 84 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVM---------------PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEEC---------------TTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeC---------------HHHhhcCCCCCEEEeCCCCcc
Confidence 99999 577777766899999999999998877542 234677889999998877653
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=9.2e-11 Score=133.14 Aligned_cols=121 Identities=20% Similarity=0.236 Sum_probs=106.4
Q ss_pred ceeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEee
Q 041248 519 NVRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDI 598 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l 598 (813)
.++.|++++|.+..+|.+..+++|+.|+++ ++.+..+|.. |..+++|++|+|++| .++.+| .++++++|++|+|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~Ls~N---~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPPA-LAALRCLEVLQASDN---ALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCGG-GGGCTTCCEEECCSS---CCCCCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecC-cccccccchh-hhcCCCCCEEECCCC---CCCCCc-ccCCCCCCcEEEC
Confidence 478899999999999889999999999999 5678889876 899999999999999 899998 8999999999999
Q ss_pred cCCCCccc--chhhcCCCCCcEEeccCcccccccchh---hhcCCCCCceeec
Q 041248 599 SHAGIREL--PEELKLLVNLKCLNLRWTRMLNKIPRL---LISNSSWLRVLRM 646 (813)
Q Consensus 599 ~~~~i~~l--p~~~~~l~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l 646 (813)
++|.++.+ |..++.+++|++|++++| .+..+|+. ++..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 99999998 899999999999999999 46766653 2344788888753
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.11 E-value=4.1e-10 Score=112.02 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=112.5
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
..++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++... ....-...+.+..+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 46899999999999999876655699999999999999999988751 11111123333333332322222222111110
Q ss_pred CCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCccccc-c-cCCCCcceE
Q 041248 238 VDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVDVC-G-SMEADKKFQ 313 (813)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~v~-~-~~~~~~~~~ 313 (813)
.. .-.+++.+||+||++.. .....+...+ .....+.++|+||+..... . .......++
T Consensus 96 ~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l-~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 96 AP-----------------IGGAPFKIIFLDEADALTADAQAALRRTM-EMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp CC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHH-HHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHH-HhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 00 01257889999999753 2233333222 2234567888888765321 1 112234789
Q ss_pred cCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 314 VACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 314 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
+.+++.++..+++.+.+.......+ .+..+.|++.++|.|..+..+
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999987643221112 356778999999999865443
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=4.2e-10 Score=107.43 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=104.5
Q ss_pred eeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCc-cccCCCCCCEEeecCCCCcccchh-hcCCCCCcEE
Q 041248 542 LLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPF-GMSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCL 619 (813)
Q Consensus 542 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~-~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L 619 (813)
.+.++++ ++.+..+|..+ .++|++|++++| .++.+|. .++.+++|++|++++|.++.+|.. +..+++|++|
T Consensus 9 ~~~l~~~-~~~l~~~p~~~---~~~l~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCN-SKGLTSVPTGI---PSSATRLELESN---KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECC-SSCCSSCCTTC---CTTCSEEECCSS---CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEec-CCCCccCCCCC---CCCCcEEEeCCC---cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 4567777 55677888653 378999999999 8888875 468999999999999999999876 6899999999
Q ss_pred eccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchh
Q 041248 620 NLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYD 691 (813)
Q Consensus 620 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 691 (813)
++++| .+..+|...++.+++|++|++++|.+..++. ..+..+++|+.|+++.|...
T Consensus 82 ~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------------~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 82 YLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPD---------------GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------------TTTTTCTTCCEEECCSSCBC
T ss_pred ECCCC-CccccCHHHhhCCcccCEEECcCCcceEeCH---------------HHhcCCcccCEEEecCCCee
Confidence 99999 5788888767899999999999998876542 23577889999999887653
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=1.4e-11 Score=120.16 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=84.4
Q ss_pred cccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccchhhcCCCCCcEEeccCcccccccch
Q 041248 553 LEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCLNLRWTRMLNKIPR 632 (813)
Q Consensus 553 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 632 (813)
++.+|.. +..+++|++|++++| .++.+| .+.++++|++|++++|.++.+|..+..+++|++|++++| .+..+|.
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n---~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~ 110 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTN---NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG 110 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEE---EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH
T ss_pred HhhhhHH-HhcCCCCCEEECCCC---CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc
Confidence 4445543 777788888888888 777777 777788888888888888788777777778888888887 4666763
Q ss_pred hhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchh
Q 041248 633 LLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYD 691 (813)
Q Consensus 633 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 691 (813)
++.+++|++|++++|.+..++ .+..+..+++|+.|+++.|...
T Consensus 111 --~~~l~~L~~L~l~~N~i~~~~--------------~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 111 --IEKLVNLRVLYMSNNKITNWG--------------EIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp --HHHHHHSSEEEESEEECCCHH--------------HHHHHTTTTTCSEEEECSCHHH
T ss_pred --cccCCCCCEEECCCCcCCchh--------------HHHHHhcCCCCCEEEecCCccc
Confidence 777788888888877665431 2245677778888887776654
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=5.4e-10 Score=106.13 Aligned_cols=103 Identities=22% Similarity=0.281 Sum_probs=74.6
Q ss_pred eEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEe
Q 041248 543 LTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLN 620 (813)
Q Consensus 543 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~ 620 (813)
+.++++ ++.+..+|..+ .++|++|+|++| .++.+ |..+.++++|++|+|++|.|+.+|.. +..+++|++|+
T Consensus 15 ~~l~~~-~n~l~~iP~~~---~~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQ-NIRLASVPAGI---PTDKQRLWLNNN---QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECC-SSCCSSCCSCC---CTTCSEEECCSS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeC-CCCCCccCCCc---CCCCcEEEeCCC---CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 456666 55566677653 267788888888 67766 45677788888888888888877766 46788888888
Q ss_pred ccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 621 LRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 621 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
|++| .+..+|.+.+..+++|++|++.+|.+..
T Consensus 88 L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 88 LNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCCC-ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8877 5677777667778888888888776654
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1.1e-11 Score=121.10 Aligned_cols=143 Identities=20% Similarity=0.170 Sum_probs=109.0
Q ss_pred cccccc-cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCcccc
Q 041248 529 QIEILS-EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIRELP 607 (813)
Q Consensus 529 ~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~lp 607 (813)
.+..++ .+..+++|++|+++ ++.+..+| .+..+++|++|++++| .++.+|..+..+++|++|++++|.++.+|
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls-~n~l~~l~--~~~~l~~L~~L~l~~n---~l~~l~~~~~~~~~L~~L~L~~N~l~~l~ 109 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALS-TNNIEKIS--SLSGMENLRILSLGRN---LIKKIENLDAVADTLEELWISYNQIASLS 109 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECS-EEEESCCC--CHHHHTTCCEEEEEEE---EECSCSSHHHHHHHCSEEEEEEEECCCHH
T ss_pred cHhhhhHHHhcCCCCCEEECC-CCCCcccc--ccccCCCCCEEECCCC---CcccccchhhcCCcCCEEECcCCcCCcCC
Confidence 334443 35678999999999 55677787 3889999999999999 88899988888899999999999999988
Q ss_pred hhhcCCCCCcEEeccCcccccccch-hhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEE
Q 041248 608 EELKLLVNLKCLNLRWTRMLNKIPR-LLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLE 684 (813)
Q Consensus 608 ~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 684 (813)
.+..+++|++|++++| .+..+|. ..+..+++|++|++.+|.+.+..+.. ..........+..+++|+.|+
T Consensus 110 -~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-----~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-----NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-----TTHHHHHHHHHHHCSSCSEEC
T ss_pred -ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccc-----cchHHHHHHHHHhCCCcEEEC
Confidence 6889999999999999 5677664 33889999999999988765421000 000111223367788888775
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=7.7e-10 Score=104.71 Aligned_cols=103 Identities=23% Similarity=0.298 Sum_probs=64.1
Q ss_pred eEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeecCCCCcccchh-hcCCCCCcEEe
Q 041248 543 LTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDISHAGIRELPEE-LKLLVNLKCLN 620 (813)
Q Consensus 543 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~ 620 (813)
++++++ ++.+..+|..+ .++|++|+|++| .++.+ |..+.++.+|++|+|++|.|+.+|.. +..+++|++|+
T Consensus 12 ~~l~~s-~n~l~~ip~~~---~~~l~~L~L~~N---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 12 TTVDCS-GKSLASVPTGI---PTTTQVLYLYDN---QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TEEECT-TSCCSSCCSCC---CTTCSEEECCSS---CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEeC-CCCcCccCccC---CCCCcEEEcCCC---cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 445555 34455555542 256666777776 66665 44566667777777777776666654 36667777777
Q ss_pred ccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 621 LRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 621 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
|++| .+..+|.+.+..+++|++|++++|.+..
T Consensus 85 L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 85 LNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7766 4566666556667777777776665543
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=1.4e-09 Score=103.28 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=91.7
Q ss_pred eeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCcc-ccCCCCCCEEee
Q 041248 520 VRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFG-MSKLGSLQLLDI 598 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~-i~~L~~L~~L~l 598 (813)
.+.++++++.+..+|.. -.++|+.|+++ ++.+..+++..|..+++|++|+|++| .++.+|.. +.++++|++|+|
T Consensus 14 ~~~l~~~~n~l~~iP~~-~~~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N---~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-IPTDKQRLWLN-NNQITKLEPGVFDHLVNLQQLYFNSN---KLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCCSSCCSC-CCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS---CCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCCCccCCC-cCCCCcEEEeC-CCCccccCHHHhcCCcCCCEEECCCC---CCCccChhHhCCcchhhEEEC
Confidence 35788888888888653 24899999999 66788888777999999999999999 89999865 589999999999
Q ss_pred cCCCCcccchh-hcCCCCCcEEeccCcccccccch
Q 041248 599 SHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPR 632 (813)
Q Consensus 599 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~ 632 (813)
++|.|+.+|.. +..+++|++|++++|+ +...|.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 99999999986 8999999999999994 455554
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1.8e-09 Score=114.37 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=31.4
Q ss_pred CCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEeec
Q 041248 539 CPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDIS 599 (813)
Q Consensus 539 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~ 599 (813)
|++|+.|.+. . .+..++..+|.++++|+.|++++| .+..++ ..+.++.++.++.+.
T Consensus 100 ~~~L~~l~L~-~-~i~~I~~~aF~~~~~L~~l~l~~n---~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 100 KQTLEKVILS-E-KIKNIEDAAFKGCDNLKICQIRKK---TAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp CTTCCC-CBC-T-TCCEECTTTTTTCTTCCEEEBCCS---SCCEECTTSSCTTTCEEEECTT
T ss_pred cCCCcEEECC-c-cccchhHHHhhcCcccceEEcCCC---CccccchhhhcCCCceEEecCc
Confidence 6666666666 3 456666666666666666666666 444443 344444444444443
No 153
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.96 E-value=3.4e-08 Score=104.29 Aligned_cols=272 Identities=14% Similarity=0.093 Sum_probs=143.7
Q ss_pred CcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIG 232 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (813)
..++|++..++.+..++.. .....|.|+|++|+|||++|+.+++.. ... .+++..+......++...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~-- 83 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAI-- 83 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHH--
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHH--
Confidence 4689999999988887752 344678999999999999999999876 222 234433322222221111
Q ss_pred HHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--cccccccCCC-------CC----------CCCCcEE
Q 041248 233 KKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--DLTKMGIPLS-------GP----------KNTTSKV 293 (813)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~-------~~----------~~~~s~i 293 (813)
+...+ .++.++++|++.... ....+...+. .. ...+.++
T Consensus 84 ---------------------l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 84 ---------------------LANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ---------------------HTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ---------------------HHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 11101 245578888886431 1111110000 00 0123456
Q ss_pred EEEcCccc-ccccC-C-CCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHHHhhcC--
Q 041248 294 VFTTRFVD-VCGSM-E-ADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIGRAMAF-- 368 (813)
Q Consensus 294 lvTtR~~~-v~~~~-~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~-- 368 (813)
|.||.... +...+ . ....+++.+++.++..+++.+.+.......+ .+..+.+++.++|.|..+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 66665433 21111 1 2357899999999999999887754332222 356788999999999888666543321
Q ss_pred ----C--CCHHHHHHHHHHHhchhhhccCchHHHHhHHHHhhcCCChhhHHHHHhhhccCCCCccccHHHHHH----HHH
Q 041248 369 ----K--KTAEEWIHAIEVLRTSASEFAGLGEKVYRLLKFSYDSLQNETIRSCFLYCCLYPEDYDILKWDLID----CWI 438 (813)
Q Consensus 369 ----~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~----~w~ 438 (813)
. -+.+....+...+..........+..+...+.-.|..-+. ....+-..+++ ++..+.+ +-+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lgi-------~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALSE-------DPGTLEEVHEPYLI 290 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTTS-------CHHHHHHHTHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhCC-------CHHHHHHHHhHHHH
Confidence 1 2344444444333211111111111222222223322221 12333333332 3333322 345
Q ss_pred HcCCccc-ccccchHhhHHHHHH-HHHHhcccce
Q 041248 439 GEGFLEE-SDRFSAENQGYYIVG-TLVHACLLEE 470 (813)
Q Consensus 439 a~g~i~~-~~~~~~~~~~~~~l~-~L~~~~ll~~ 470 (813)
..|++.. ..+....+.+..|++ ++.+|+|+|+
T Consensus 291 ~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 291 RQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 6788876 456677888999998 8999999885
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=2e-09 Score=114.10 Aligned_cols=250 Identities=14% Similarity=0.101 Sum_probs=124.1
Q ss_pred ccceeEEecccccc-cccccCCC-CCceeEEEeeeccccc--cccchhhcCCCcccEEEeccCCcccccccC-ccccC--
Q 041248 517 WENVRRLSLMQNQI-EILSEVPT-CPHLLTLFLDFNYKLE--MITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSK-- 589 (813)
Q Consensus 517 ~~~~~~l~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~-- 589 (813)
+..++.|.+.++-- ..+..+.. +++|++|++++ +.+. ..+.. .++.++++.+..+ .+| ..+.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~-n~i~~~~~~~~---~~~~~~~~~~~~~------~I~~~aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISN-AEIKMYSGKAG---TYPNGKFYIYMAN------FVPAYAFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEE-EEECCEEESSS---SSGGGCCEEECTT------EECTTTTEEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCc-ceeEEecCccc---ccccccccccccc------ccCHHHhcccc
Confidence 34566666654311 11111222 66777777773 3343 12211 1222344444444 232 23455
Q ss_pred ------CCCCCEEeecCCCCcccchh-hcCCCCCcEEeccCcccccccchhhhcCCCCCceeecccccc----CCCCCC-
Q 041248 590 ------LGSLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGF----ENSEEP- 657 (813)
Q Consensus 590 ------L~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~----~~~~~~- 657 (813)
+.+|+.|+|.+ .++.++.. |..|++|+.|++.+| .+..++.+.+..+.++.++....+.. ..+...
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred cccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence 78888888887 77777664 778888888888877 45667776677777777666543110 010000
Q ss_pred -----Ccc--ccccCC---ccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCccccccccccc
Q 041248 658 -----SED--SVLIGG---GEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSD 727 (813)
Q Consensus 658 -----~~~--~~~~~~---~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~ 727 (813)
.+. ..+... .......--...++..+.+..+-...... .....+++|+.|+|.++ .++.++...|..
T Consensus 172 f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~--~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~ 248 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFK--LIRDYMPNLVSLDISKT-NATTIPDFTFAQ 248 (329)
T ss_dssp EEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHH--HHHHHCTTCCEEECTTB-CCCEECTTTTTT
T ss_pred cccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHH--HHHHhcCCCeEEECCCC-CcceecHhhhhC
Confidence 000 000000 00000000112334444443321110000 00112346777777763 355666556777
Q ss_pred ccccceeeecccCccceeeecccccCCCCCCcccccCcc-eEeeccCcCCCccc--chhcCCCCceEeee
Q 041248 728 LKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLH-RVTMERCHKLKDLT--FLVCAPSLKSLSLY 794 (813)
Q Consensus 728 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~--~l~~l~~L~~L~l~ 794 (813)
+++|+.|.+.+ +++.+....+. .+++|+ .|.+.+ .++.++ .+..+++|+.|+++
T Consensus 249 ~~~L~~l~l~~--ni~~I~~~aF~---------~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 249 KKYLLKIKLPH--NLKTIGQRVFS---------NCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CTTCCEEECCT--TCCEECTTTTT---------TCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred CCCCCEEECCc--ccceehHHHhh---------CChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence 77777777765 25554444333 566777 777765 455655 34566777777664
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=3.4e-09 Score=100.20 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=88.6
Q ss_pred eeEEecccccccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCcc-ccCCCCCCEEee
Q 041248 520 VRRLSLMQNQIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFG-MSKLGSLQLLDI 598 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~-i~~L~~L~~L~l 598 (813)
.+.+++++|.+..+|... .++|+.|+++ ++.+..+++..|..+++|++|+|++| .++.+|.. +.++++|++|+|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~-~N~i~~~~~~~~~~l~~L~~L~Ls~N---~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLY-DNQITKLEPGVFDRLTQLTRLDLDNN---QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS---CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcC-CCcCCccChhhhcCcccCCEEECCCC---CcCccChhhccCCCCCCEEEC
Confidence 457889999988887532 4899999999 66788888777999999999999999 89888765 589999999999
Q ss_pred cCCCCcccchh-hcCCCCCcEEeccCcc
Q 041248 599 SHAGIRELPEE-LKLLVNLKCLNLRWTR 625 (813)
Q Consensus 599 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 625 (813)
++|.++.+|.. +..+++|++|++++|+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 99999999875 8899999999999995
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=5.1e-09 Score=110.60 Aligned_cols=184 Identities=15% Similarity=0.163 Sum_probs=111.5
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFD-CVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++... ...+. ..+++..+.......+ +++++.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 46899999999999999876655599999999999999999988751 11111 2333333322222111 11111110
Q ss_pred CCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCcccc-ccc-CCCCcc
Q 041248 237 LVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVDV-CGS-MEADKK 311 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~v-~~~-~~~~~~ 311 (813)
.. ...+ .+++.++|+||++.. ..+..+...+ .....++.+|+||+...- ... ......
T Consensus 98 ~~----------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~l-e~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 98 QK----------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTM-ELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HB----------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHH-HHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred hc----------------cccCCCCCceEEEEECcccCCHHHHHHHHHHH-hccCCCceEEEEeCChhhchhHHHhhceE
Confidence 00 0011 356889999999753 2333333222 223356778887765432 111 123457
Q ss_pred eEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchH-HHHHHH
Q 041248 312 FQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLA-LITIGR 364 (813)
Q Consensus 312 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa-i~~~~~ 364 (813)
+++.+++.++..+++...+......-+ .+.+..|++.++|.|.. +..+..
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999987643221111 35678899999999954 444433
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=3.8e-08 Score=106.57 Aligned_cols=228 Identities=11% Similarity=0.085 Sum_probs=105.4
Q ss_pred ceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEeecCCCCcccchhhcCCCCCcEE
Q 041248 541 HLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDISHAGIRELPEELKLLVNLKCL 619 (813)
Q Consensus 541 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 619 (813)
+|+.+.+. . .+..++..+|.++ +|+.+.+.. .++.++ ..+.++.+|+.+++..|+++.+|...-...+|+.+
T Consensus 136 ~L~~i~l~-~-~i~~I~~~aF~~~-~L~~i~lp~----~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 136 QIAKVVLN-E-GLKSIGDMAFFNS-TVQEIVFPS----TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp CCSEEECC-T-TCCEECTTTTTTC-CCCEEECCT----TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred CccEEEeC-C-CccEECHHhcCCC-CceEEEeCC----CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 45555554 1 2455555555553 455555543 233332 34555555555555555555555543334555555
Q ss_pred eccCcccccccchhhhcCCCCCceeeccccccCCCCCCC-----cc-ccccC-CccchhHHhhcCCCCcEEEEEEcchh-
Q 041248 620 NLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPS-----ED-SVLIG-GGEVLVHELLGLRYLEVLELTLRSYD- 691 (813)
Q Consensus 620 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~-----~~-~~~~~-~~~~~~~~l~~L~~L~~L~l~~~~~~- 691 (813)
.+..+ +..++.+.+.++++|+.+.+..+ +..+...- +. ..++. ...-....|.++++|+.+.+..+...
T Consensus 209 ~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 209 LLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred EeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccC
Confidence 55432 45555555555555555555421 11111000 00 00000 00001133556666776666543321
Q ss_pred ----hHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcce
Q 041248 692 ----ALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHR 767 (813)
Q Consensus 692 ----~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 767 (813)
.+.. .....+.+|+.+.|.. .++.+....|.++.+|+.+.|.. +++.+....+. ++ +|+.
T Consensus 286 ~~~~~I~~--~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~---------~~-~L~~ 349 (401)
T 4fdw_A 286 DPEAMIHP--YCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFN---------NT-GIKE 349 (401)
T ss_dssp CTTCEECT--TTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSS---------SS-CCCE
T ss_pred CcccEECH--HHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCC---------CC-CCCE
Confidence 0110 1112234566666653 35555545566666777776642 35544333333 45 7777
Q ss_pred EeeccCcCCCccc--chhcC-CCCceEeeec
Q 041248 768 VTMERCHKLKDLT--FLVCA-PSLKSLSLYG 795 (813)
Q Consensus 768 L~l~~c~~l~~l~--~l~~l-~~L~~L~l~~ 795 (813)
|.+.++. +..++ .+..+ .+++.|.+-.
T Consensus 350 l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 350 VKVEGTT-PPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp EEECCSS-CCBCCCSSCCCSCTTCCEEEECG
T ss_pred EEEcCCC-CcccccccccCCCCCccEEEeCH
Confidence 7776642 33333 12233 3566666643
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=1.9e-08 Score=106.30 Aligned_cols=180 Identities=17% Similarity=0.139 Sum_probs=110.4
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-CEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSF-DCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++... ...+ ...+.+..+.......+ .
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~------- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVI-R------- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTT-H-------
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHH-H-------
Confidence 46899999999999999877666699999999999999999998751 1111 11233332221111110 0
Q ss_pred CCCCccCCCCHHHHHHHHHH---HhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCcccc-ccc-CCCC
Q 041248 237 LVDDSWKSKSVEEKALDIFR---SLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVDV-CGS-MEAD 309 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~---~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~v-~~~-~~~~ 309 (813)
+....+.. ...+++.++|+||++.. ..+..+...+ .....++++|+||....- ... ....
T Consensus 95 ------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~l-e~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 95 ------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM-EMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp ------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHH-HHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred ------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHH-HhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 01111111 11256889999999753 2333333222 223456788888765432 111 1123
Q ss_pred cceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHH
Q 041248 310 KKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIG 363 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (813)
..+.+.+++.++..+++...+......-+ .+..+.|++.++|.|..+..+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 47899999999999999887654332122 3567889999999998664443
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=2e-07 Score=100.92 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=78.5
Q ss_pred CCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEeecCCCCcccch-hhcCCCC
Q 041248 538 TCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDISHAGIRELPE-ELKLLVN 615 (813)
Q Consensus 538 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~-~~~~l~~ 615 (813)
.+..++.+.+. +.+..++..+|.++ +|+.+.+..+ ++.++ ..+.+ .+|+.+.+.. .++.++. .+..|.+
T Consensus 111 ~~~~l~~i~ip--~~i~~I~~~aF~~~-~L~~i~l~~~----i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 111 ILKGYNEIILP--NSVKSIPKDAFRNS-QIAKVVLNEG----LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp ECSSCSEEECC--TTCCEECTTTTTTC-CCSEEECCTT----CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTT
T ss_pred ecCCccEEEEC--CccCEehHhhcccC-CccEEEeCCC----ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCccc
Confidence 45677778776 35778888889885 7999998765 56664 34555 4799999987 6777764 4889999
Q ss_pred CcEEeccCcccccccchhhhcCCCCCceeeccc
Q 041248 616 LKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFA 648 (813)
Q Consensus 616 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 648 (813)
|+.+++.+| .+..+|.+.+. +++|+.+.+..
T Consensus 182 L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 182 LKKADLSKT-KITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp CCEEECTTS-CCSEECTTTTT-TCCCSEEECCT
T ss_pred CCeeecCCC-cceEechhhEe-ecccCEEEeCC
Confidence 999999988 68899998666 68999999873
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.9e-07 Score=96.29 Aligned_cols=170 Identities=7% Similarity=0.033 Sum_probs=104.5
Q ss_pred cccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCC--CC-C-EEEEEEecCccCHHHHHHH
Q 041248 159 TIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPT--SF-D-CVIWAVVSKDLRLEKIQED 230 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~--~f-~-~~~wv~~~~~~~~~~~~~~ 230 (813)
.+.||+++++++...|.. +....+.|+|++|+|||++++.+++....... .. . ..+.+++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 478999999999887753 56788999999999999999999998722111 11 1 3566776677788899999
Q ss_pred HHHHcCCCCCccCCCCHHHHHHHHHHHh---cCCcEEEEEecccCcccccccccCCC-C-CCCCCcEEEEEcCccccc--
Q 041248 231 IGKKIGLVDDSWKSKSVEEKALDIFRSL---REKRFVLLLDDIWERVDLTKMGIPLS-G-PKNTTSKVVFTTRFVDVC-- 303 (813)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l~-~-~~~~~s~ilvTtR~~~v~-- 303 (813)
|++++...... .... .+....+...+ .+++++++||+++...+.+.+...+. + .......||.++...+..
T Consensus 101 I~~~L~g~~~~-~~~~-~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLC-GDIS-LEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC---CCCC-HHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCC-chHH-HHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 99998643211 1122 23334444433 46789999999975432111111110 0 111122333344332221
Q ss_pred -------ccCCCCcceEcCCCCHHHHHHHHHHhhC
Q 041248 304 -------GSMEADKKFQVACLSEEDAWELFRKKVG 331 (813)
Q Consensus 304 -------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 331 (813)
..+ ....+.+++++.++-.+++.+++.
T Consensus 179 ~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 111 124689999999999999988864
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=3e-08 Score=105.77 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=72.1
Q ss_pred EEecccc-cccccccCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEeec
Q 041248 522 RLSLMQN-QIEILSEVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDIS 599 (813)
Q Consensus 522 ~l~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~ 599 (813)
.++++++ .+..+|.+..+++|+.|+|++++.+..+++..|..+++|++|+|++| .++.+| ..+.+|++|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N---~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS---GLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS---CCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC---ccceeCHHHhcCCcCCCEEeCC
Confidence 3566665 67777666677778888887436677777766777888888888888 677664 356778888888888
Q ss_pred CCCCcccchhhcCCCCCcEEeccCcc
Q 041248 600 HAGIRELPEELKLLVNLKCLNLRWTR 625 (813)
Q Consensus 600 ~~~i~~lp~~~~~l~~L~~L~l~~~~ 625 (813)
+|.++.+|..+....+|++|+|.+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 88887777664444448888887774
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=5.3e-08 Score=103.86 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=76.6
Q ss_pred EEEeeeccccccccchhhcCCCcccEEEecc-CCcccccccC-ccccCCCCCCEEeecCCCCcccch-hhcCCCCCcEEe
Q 041248 544 TLFLDFNYKLEMITDGFFQCMPSLKVLKMSN-CGHVKVLKLP-FGMSKLGSLQLLDISHAGIRELPE-ELKLLVNLKCLN 620 (813)
Q Consensus 544 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~ 620 (813)
.+++++++.+..+|. +..+++|++|+|++ | .++.+| ..+++|.+|++|+|++|.|+.+|. .|.+|++|++|+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n---~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQ---HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCS---SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCC---CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 456663336777777 77788888888885 7 777776 467888888888888888887765 468888888888
Q ss_pred ccCcccccccchhhhcCCCCCceeeccccccCC
Q 041248 621 LRWTRMLNKIPRLLISNSSWLRVLRMFAIGFEN 653 (813)
Q Consensus 621 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 653 (813)
|++| .+..+|.+.+..++ |++|++.+|.+..
T Consensus 87 l~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFN-ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSS-CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCC-ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888 56778776455555 8888888777654
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.56 E-value=2.7e-07 Score=97.04 Aligned_cols=179 Identities=12% Similarity=0.143 Sum_probs=109.8
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFD-CVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~------------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGI------------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCT------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccCh------------
Confidence 45899999999999988776655699999999999999999988751 11111 1222332221110
Q ss_pred CCCCccCCCCHHHHHHHHHHH--h-cCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCccc-cccc-CCCC
Q 041248 237 LVDDSWKSKSVEEKALDIFRS--L-REKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVD-VCGS-MEAD 309 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~-v~~~-~~~~ 309 (813)
....+....+... + .+++.++|+|+++.. .....+...+ .....+.++|+||.... +... ....
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~l-e~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTM-EMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGT-SSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHH-HhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 0011111111111 1 256889999999753 2233343334 33345677887776543 2111 1223
Q ss_pred cceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 310 KKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
..+++.+++.++..+++...+......-+ .+....+++.++|.+..+...
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 57899999999999999887754332222 356778889999998765433
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.55 E-value=5.1e-07 Score=97.28 Aligned_cols=194 Identities=14% Similarity=0.119 Sum_probs=108.9
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|++..++.+...+..+. ...+.|+|++|+||||+|+.+++... ....+. ............+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCC-------CCCCcccHHHHHHhccCC
Confidence 458999999999999987654 45789999999999999999988762 111110 000000011111111000
Q ss_pred C-----CCC-ccCCCCHHHHHHHHHHH-hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCccc-ccc-c
Q 041248 237 L-----VDD-SWKSKSVEEKALDIFRS-LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVD-VCG-S 305 (813)
Q Consensus 237 ~-----~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~-v~~-~ 305 (813)
. ... ........+....+... ..+++.++|+||++.. .....+...+ .....+..+|++|.... +.. .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~l-e~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL-EEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHH-HSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHH-hcCCCceEEEEEeCChHhCcHHH
Confidence 0 000 00111222222221111 1356789999999643 2233333333 22234566776665433 211 1
Q ss_pred CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHHH
Q 041248 306 MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITIG 363 (813)
Q Consensus 306 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (813)
......+++.+++.++..+++.+.+.......+ .+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 123467899999999999999877632221111 3567889999999998776544
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.40 E-value=3.4e-07 Score=88.20 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=41.5
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++||+.+++++.+.+.......+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987667788999999999999999998876
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.39 E-value=4.9e-08 Score=104.60 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=90.6
Q ss_pred ceeEEecccccccccc-----c-C-CCCCceeEEEeeecccccccc-chhhcCCCcccEEEeccCCccccccc-----Cc
Q 041248 519 NVRRLSLMQNQIEILS-----E-V-PTCPHLLTLFLDFNYKLEMIT-DGFFQCMPSLKVLKMSNCGHVKVLKL-----PF 585 (813)
Q Consensus 519 ~~~~l~l~~~~~~~l~-----~-~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~l-----p~ 585 (813)
.++.|++++|.+.... . + ...++|+.|++++| .+.... ..+...+++|++|+|++| .++.. ..
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n---~l~~~~~~~L~~ 148 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN---SLGPEACKDLRD 148 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS---CCCHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC---CCCHHHHHHHHH
Confidence 5667777777665421 1 1 23467888888743 343221 222344567788888887 55422 11
Q ss_pred cc-cCCCCCCEEeecCCCCcc-----cchhhcCCCCCcEEeccCcccccc-----cchhhhcCCCCCceeeccccccCCC
Q 041248 586 GM-SKLGSLQLLDISHAGIRE-----LPEELKLLVNLKCLNLRWTRMLNK-----IPRLLISNSSWLRVLRMFAIGFENS 654 (813)
Q Consensus 586 ~i-~~L~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~ 654 (813)
.+ ....+|++|+|++|.|+. ++..+..+++|++|+|++|. +.. ++.. +..+++|++|++++|.+...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHH
Confidence 22 235678888888887653 45555677778888888774 332 2333 56667788888777665431
Q ss_pred CCCCccccccCCccchhHHhhcCCCCcEEEEEEcchh
Q 041248 655 EEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYD 691 (813)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 691 (813)
. .......+...++|+.|+++.|.+.
T Consensus 227 g-----------~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 A-----------ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp H-----------HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred H-----------HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 0 1112334556677777777766653
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=5.6e-08 Score=104.18 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=101.0
Q ss_pred CCceeEEEeeeccccccccchhhc-----CCCcccEEEeccCCcccccc--cCccccCCCCCCEEeecCCCCcccc----
Q 041248 539 CPHLLTLFLDFNYKLEMITDGFFQ-----CMPSLKVLKMSNCGHVKVLK--LPFGMSKLGSLQLLDISHAGIRELP---- 607 (813)
Q Consensus 539 ~~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~--lp~~i~~L~~L~~L~l~~~~i~~lp---- 607 (813)
.++|+.|++++ +.+.......+. ..++|++|+|++| .+.. +..-...+.+|++|+|++|.+...+
T Consensus 71 ~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n---~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASC---QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTC---CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCC---CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 46788999984 445443322222 2368999999999 5542 2222334668899999999886432
Q ss_pred -hhh-cCCCCCcEEeccCcccccc-----cchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCC
Q 041248 608 -EEL-KLLVNLKCLNLRWTRMLNK-----IPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYL 680 (813)
Q Consensus 608 -~~~-~~l~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 680 (813)
..+ ...++|++|+|++|. +.. ++.. +..+++|++|++++|.+.... .......+...++|
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g-----------~~~L~~~L~~~~~L 213 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEG-----------LELLAAQLDRNRQL 213 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHH-----------HHHHHHHGGGCSCC
T ss_pred HHHHHhcCCccceeeCCCCC-CChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHH-----------HHHHHHHHhcCCCc
Confidence 222 246789999999984 433 4443 577889999999987654310 11223456777888
Q ss_pred cEEEEEEcchhhHH--hhhcchhhhhcceeeeecccC
Q 041248 681 EVLELTLRSYDALQ--FFLSSNKLKSCIRSLFLNKLG 715 (813)
Q Consensus 681 ~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 715 (813)
+.|+++.|.+.... .+.......++|+.|+|++|.
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 99998888765422 233323334578888887753
No 168
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=2.1e-07 Score=86.65 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=63.3
Q ss_pred cceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCc-ccccCcceEeeccCcCCCc--ccc
Q 041248 705 CIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEP-FVFRSLHRVTMERCHKLKD--LTF 781 (813)
Q Consensus 705 ~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~--l~~ 781 (813)
+|+.|++++|. ++...+..+..+++|+.|+|++|..+++-.+..+. .. ...++|++|+|++|+.+++ +..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~------~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS------QLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH------TCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH------hcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 67788888775 55555556777888888888888877643333322 00 0135788888888888777 445
Q ss_pred hhcCCCCceEeeecCchhhhh
Q 041248 782 LVCAPSLKSLSLYGCNAMEEI 802 (813)
Q Consensus 782 l~~l~~L~~L~l~~c~~l~~i 802 (813)
+..+++|++|+|++|+.++..
T Consensus 135 L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCCH
T ss_pred HhcCCCCCEEECCCCCCCCch
Confidence 667888888888888887753
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.31 E-value=1.4e-06 Score=89.83 Aligned_cols=177 Identities=19% Similarity=0.195 Sum_probs=102.2
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
..++|.+..++++.+.+.. .....+.|+|++|+|||+||+.+++.. ... .+.+..+.-.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~-- 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELV-- 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHH--
Confidence 4689999999999887642 345679999999999999999999876 222 2223221110
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc------------c----ccccccCCC-CCC
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV------------D----LTKMGIPLS-GPK 287 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~-~~~ 287 (813)
+ . ............+......++.+|++|+++... . +..+...+. ...
T Consensus 89 -----------~-~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 -----------K-K---FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -----------C-C---STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -----------H-h---ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 0 011111222222333334567899999995420 0 111111110 022
Q ss_pred CCCcEEEEEcCcccccc-----cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCC-cchHHHH
Q 041248 288 NTTSKVVFTTRFVDVCG-----SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGG-LPLALIT 361 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~ 361 (813)
..+..||.||....... .......+.++..+.++..+++...+.......+.+ ...+++.+.| .|-.+..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 34567777887553321 112234689999999999999998876544222222 4567777777 4434443
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.31 E-value=3.8e-07 Score=91.52 Aligned_cols=172 Identities=9% Similarity=0.086 Sum_probs=98.9
Q ss_pred Ccccch---hHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHH
Q 041248 158 PTIVGL---QSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 158 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
..|+|+ +..++.+..+........+.|+|++|+||||+|+.+++... .....+.|+.++..... +.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~~ 98 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STAL 98 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHHH
Confidence 356763 35566666666555678899999999999999999998762 11234566655432110 0000
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc----ccccccCCCC-CCCCCcEEEEEcCcccc-c-----
Q 041248 235 IGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD----LTKMGIPLSG-PKNTTSKVVFTTRFVDV-C----- 303 (813)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~-~~~~~s~ilvTtR~~~v-~----- 303 (813)
.+.+ .++.++|+||++.... ...+...+.. ......++|+||+...- .
T Consensus 99 --------------------~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 99 --------------------LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp --------------------GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred --------------------HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0011 3456899999964321 1222111100 01112247777764321 1
Q ss_pred ---ccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 304 ---GSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 304 ---~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
..+.....+++++++.++..+++...+.......+ .+..+.|++.++|.+-.+..+
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHH
Confidence 11112267899999999999999887643221122 356778889999988666443
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=5.9e-06 Score=92.61 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=106.0
Q ss_pred CcccchhHHHHHHHHHHhc-----------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC
Q 041248 158 PTIVGLQSQLEQVWRCLVE-----------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK 220 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 220 (813)
..++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. .+ .++.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeCCC
Confidence 4689999999999999864 134789999999999999999999876 12 234444444
Q ss_pred ccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----ccccccCCCCCCCCCcEEEE
Q 041248 221 DLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD-----LTKMGIPLSGPKNTTSKVVF 295 (813)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----~~~~~~~l~~~~~~~s~ilv 295 (813)
..... +....+........ ... -...... .....+++.+|++|+++.... +..+...+ . ..+..||+
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l-~--~~~~~iIl 184 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMS-VVG-YFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC-R--KTSTPLIL 184 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCC-STT-TTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH-H--HCSSCEEE
T ss_pred cchHH-HHHHHHHHHhcccc-HHH-HHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHH-H--hcCCCEEE
Confidence 33332 22222222111000 000 0000000 001235788999999964311 12222111 1 12334555
Q ss_pred EcCccc---ccccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc-chHHHHHH
Q 041248 296 TTRFVD---VCGSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL-PLALITIG 363 (813)
Q Consensus 296 TtR~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 363 (813)
++.+.. +.........+.+++++.++..+++...+.......++ +....|++.++|. +-++..+.
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 444322 22222334578999999999999988876433222222 3567889999985 44555543
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.27 E-value=1.3e-05 Score=81.80 Aligned_cols=168 Identities=17% Similarity=0.139 Sum_probs=89.9
Q ss_pred CcccchhHHHHHHHH-------HHh---cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHH
Q 041248 158 PTIVGLQSQLEQVWR-------CLV---EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKI 227 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (813)
+.++|....++++.+ .+. ......+.|+|++|+|||++|+.+++.. ...| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH------
Confidence 346777776666555 332 3456789999999999999999999875 2222 12222110
Q ss_pred HHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc-----------cc-ccccccCCC--CCCCCCcEE
Q 041248 228 QEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER-----------VD-LTKMGIPLS--GPKNTTSKV 293 (813)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~-~~~~~~~l~--~~~~~~s~i 293 (813)
..+.. ...........+......++.+|++|+++.. .. +..+...+. ........|
T Consensus 101 ------~~g~~----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ------MIGFS----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ------CTTCC----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ------hcCCc----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00100 0000111122222333467889999998542 11 111211110 112334456
Q ss_pred EEEcCccccccc---CC-CCcceEcCCCCH-HHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc
Q 041248 294 VFTTRFVDVCGS---ME-ADKKFQVACLSE-EDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL 355 (813)
Q Consensus 294 lvTtR~~~v~~~---~~-~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (813)
|.||........ .+ -...++++++++ ++...++.+... .+ .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----FK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----SC---HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----CC---HHHHHHHHHHhcCC
Confidence 667776533221 11 245688999998 666666665321 11 24577888888884
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.26 E-value=1.1e-05 Score=88.03 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=102.2
Q ss_pred CcccchhHHH---HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHH
Q 041248 158 PTIVGLQSQL---EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGK 233 (813)
Q Consensus 158 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 233 (813)
..++|.+..+ ..+...+..+....+.|+|++|+||||+|+.+++.. ...| +.++... ....+ +.++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~i-r~~~- 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEI-REAI- 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHH-HHHH-
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHH-HHHH-
Confidence 4689999888 778888877777889999999999999999999876 2222 2222211 11111 1111
Q ss_pred HcCCCCCccCCCCHHHHHHHHH-HHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEE-EEcCcccc---cccC
Q 041248 234 KIGLVDDSWKSKSVEEKALDIF-RSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVV-FTTRFVDV---CGSM 306 (813)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~il-vTtR~~~v---~~~~ 306 (813)
.... ....+++.+|++|++... .....+...+ .. + ...+| .||.+... ....
T Consensus 96 ------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~l-e~-~-~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 96 ------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHI-ED-G-TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp ------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHH-HT-T-SCEEEEEESSCGGGSSCHHHH
T ss_pred ------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHH-hc-C-ceEEEecCCCCcccccCHHHh
Confidence 1111 112467889999999753 2233333333 11 1 23333 35555431 1111
Q ss_pred CCCcceEcCCCCHHHHHHHHHHhhCCCccC---C-ChhHHHHHHHHHHHhCCcchHHHH
Q 041248 307 EADKKFQVACLSEEDAWELFRKKVGEETLE---S-DHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 307 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~---~-~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
.....+.+++++.++...++.+.+...... . ..--.+..+.|++.++|.+-.+..
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 234578899999999999998876531100 0 011235677888889998765543
No 174
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=2.3e-06 Score=91.29 Aligned_cols=191 Identities=14% Similarity=0.160 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccC-CCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLES-PTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|++..++.+..++..+....+.++|++|+||||+|+.+++..... ...+ .+..+..+.......+ .+....+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHH-HHHHHHHh
Confidence 4689999999999999987654558999999999999999998875100 0111 1223333332222222 11111110
Q ss_pred -CCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCccc-cccc-CCCCcc
Q 041248 237 -LVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVD-VCGS-MEADKK 311 (813)
Q Consensus 237 -~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~-v~~~-~~~~~~ 311 (813)
..... .... .....-.+++-++++|++... .....+...+ .......++|++|.... +... ......
T Consensus 115 ~~~~~~-~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~l-e~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 115 RLTVSK-PSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTM-ETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HSCCCC-CCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHH-HHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred hhcccc-cchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHH-HhcCCCceEEEEeCchhhCcchhhccCce
Confidence 00000 0000 000111235679999998643 2222232222 22233566777665332 2111 112347
Q ss_pred eEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 312 FQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 312 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
+.+.+++.++....+...+......-+ .+..+.|++.++|.|..+..
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 899999999999999887644332222 35678999999999886543
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.23 E-value=3.4e-06 Score=92.31 Aligned_cols=181 Identities=18% Similarity=0.147 Sum_probs=102.1
Q ss_pred ccc-chhHH--HHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHH
Q 041248 159 TIV-GLQSQ--LEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 159 ~~v-Gr~~~--~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
.|+ |.... ...+.......+ ...+.|+|++|+||||||+.+++.... ...-..+++++.. .+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHH------HHHHHHHHH
Confidence 355 64433 333444443333 578999999999999999999987621 1111224455432 233344443
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc----cccccccCCCCCCCCCcEEEEEcCcccc--------
Q 041248 235 IGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV----DLTKMGIPLSGPKNTTSKVVFTTRFVDV-------- 302 (813)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~~~~~l~~~~~~~s~ilvTtR~~~v-------- 302 (813)
+... . ...+...+..++-+|++||++... ..+.+...+......|..||+||.+..-
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 3211 1 122334444366799999996432 1222222210112346778888875321
Q ss_pred -cccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHH
Q 041248 303 -CGSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALI 360 (813)
Q Consensus 303 -~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (813)
...+.....+.+++++.++..+++.+.+......-++ ++...|++.++|.+-.+.
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 1222233578899999999999998877432212222 356788888888886553
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.16 E-value=1.7e-05 Score=80.45 Aligned_cols=180 Identities=14% Similarity=0.152 Sum_probs=98.5
Q ss_pred CcccchhHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
..++|.+..++.+.+++. . ...+.|.|+|++|+|||++|+.+++.. ... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 467999988877766543 1 234568899999999999999999976 222 23333322110
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc-------------c----ccccccCCCC-CC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV-------------D----LTKMGIPLSG-PK 287 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~----~~~~~~~l~~-~~ 287 (813)
.............+.......+.+|++|+++... . +..+...+.. ..
T Consensus 78 ---------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 ---------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ---------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0011111222222333334567899999996431 1 1111111101 12
Q ss_pred CCCcEEEEEcCccccc-ccC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch-HHHH
Q 041248 288 NTTSKVVFTTRFVDVC-GSM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL-ALIT 361 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~ 361 (813)
..+..||.||...... ... .....+.++..+.++-.+++...+........ .......+++.+.|.+- .|..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCHHHHHH
Confidence 2345666666544321 111 12357789999999999999887643321111 12235788888888754 4443
Q ss_pred H
Q 041248 362 I 362 (813)
Q Consensus 362 ~ 362 (813)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=7.7e-06 Score=87.22 Aligned_cols=194 Identities=9% Similarity=0.095 Sum_probs=101.8
Q ss_pred CcccchhHHHHHHHHHH-hcCCceEEEEEcCCCCcHHHHHHHHHhhcccCC-C--CCCE--------------------E
Q 041248 158 PTIVGLQSQLEQVWRCL-VEESVGIIGLYGMGGVGKTTLLTHINNKFLESP-T--SFDC--------------------V 213 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-~--~f~~--------------------~ 213 (813)
..++|.+..++.+.+++ ..+....+.|+|+.|+||||+|+.+++...... + .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 46899999999998888 555444499999999999999999988531111 0 0110 0
Q ss_pred EEEEecCcc-CHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCC
Q 041248 214 IWAVVSKDL-RLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTT 290 (813)
Q Consensus 214 ~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~ 290 (813)
+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|++... .....+...+ .....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~l-e~~~~~ 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTM-EKYSKN 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHH-HHSTTT
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHH-HhhcCC
Confidence 111111000 000011222222210000 00000 00 002346779999999752 1122222222 111235
Q ss_pred cEEEEEcCccc-ccc-cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 291 SKVVFTTRFVD-VCG-SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 291 s~ilvTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
..+|++|.+.. +.. .......+++++++.++..+.+...+......-+. .+....|++.++|.+..+..+
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHH
Confidence 67777766433 211 11234678999999999999998876432211110 146778999999988765443
No 178
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.11 E-value=3.4e-05 Score=81.58 Aligned_cols=171 Identities=13% Similarity=0.106 Sum_probs=98.8
Q ss_pred CcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIG 232 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (813)
..++|++..++.+..++.. .....|.|+|++|+|||++|+.+++.. ...| +.+..+.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~------ 96 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGD------ 96 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhH------
Confidence 4689999999999888863 344678999999999999999998875 2222 2222221111111
Q ss_pred HHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--cccccccCCC-----------------CCCCCCcEE
Q 041248 233 KKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--DLTKMGIPLS-----------------GPKNTTSKV 293 (813)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~-----------------~~~~~~s~i 293 (813)
....+. . ..+..+|+||++.... ....+...+. ....++..+
T Consensus 97 -----------------~~~~~~-~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 97 -----------------LAAILT-N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -----------------HHHHHH-T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -----------------HHHHHH-h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111 1 2345688888886431 1111110000 001113456
Q ss_pred EEEcCcccc-ccc-C-CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 294 VFTTRFVDV-CGS-M-EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 294 lvTtR~~~v-~~~-~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
|.+|..... ... . .....+++++++.++...++.+.+.......+ .+..+.|++.+.|.|-.+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHH
Confidence 655554322 111 1 12357899999999999999887643321111 356778888999998655433
No 179
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.11 E-value=0.00016 Score=75.56 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=102.3
Q ss_pred CcccchhHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.+++|.+..++.|.+.+.. ...+.|.++|++|+|||+||+.+++.. . .. ..+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHH---
Confidence 4678999888888876631 134678999999999999999999875 1 11 22233332111
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc-------------ccccccCCC--CCCCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD-------------LTKMGIPLS--GPKNTT 290 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~--~~~~~~ 290 (813)
. .+...........+...-..++.+|++|+++.... ...+...+. .....+
T Consensus 84 ----------~----~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 84 ----------S----KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp ----------C----SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred ----------h----hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0 01122222222222223346788999999964310 011111110 112234
Q ss_pred cEEEEEcCcccccc-cC--CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc-chHHHHHH
Q 041248 291 SKVVFTTRFVDVCG-SM--EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL-PLALITIG 363 (813)
Q Consensus 291 s~ilvTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 363 (813)
..||.||....... .+ .....+.++..+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 55555665432211 00 23356788999999999999888754431111 24567889999887 44455544
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.10 E-value=8.4e-06 Score=85.08 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=84.2
Q ss_pred cccchhHHHHHHHHHHh---------------cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccC
Q 041248 159 TIVGLQSQLEQVWRCLV---------------EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLR 223 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 223 (813)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++... ........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH-RLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH-HTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCcCCCcEEEEcHH--
Confidence 47898888888876653 23445799999999999999998887762 1111111112333211
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc-----------ccccccccCCCCCCCCCcE
Q 041248 224 LEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER-----------VDLTKMGIPLSGPKNTTSK 292 (813)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~s~ 292 (813)
.+.. .............+... +.-+|++|+++.. .....+...+ .....+..
T Consensus 109 ----------~l~~---~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l-~~~~~~~~ 171 (309)
T 3syl_A 109 ----------DLVG---QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM-ENNRDDLV 171 (309)
T ss_dssp ----------GTCC---SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHH-HHCTTTCE
T ss_pred ----------Hhhh---hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHH-hcCCCCEE
Confidence 0100 00111112222222222 3459999999732 1122232222 22334567
Q ss_pred EEEEcCccc----------ccccCCCCcceEcCCCCHHHHHHHHHHhhC
Q 041248 293 VVFTTRFVD----------VCGSMEADKKFQVACLSEEDAWELFRKKVG 331 (813)
Q Consensus 293 ilvTtR~~~----------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 331 (813)
||.||.... +... ....+.+++++.++..+++...+.
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 777775432 1121 226789999999999999988764
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.09 E-value=1.7e-05 Score=85.03 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=36.6
Q ss_pred CcccchhHHHHH---HHHHHhcCC--ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQ---VWRCLVEES--VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~---l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..|+|++..++. +.+.+.... .+.+.|+|++|+|||++|+.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999988766 444444443 3589999999999999999999987
No 182
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.05 E-value=3.4e-05 Score=82.03 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=102.2
Q ss_pred CcccchhHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
..++|.+..++.+.+.+.. ...+.|.|+|++|+|||+||+.+++.. .. ..+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 4689999999998887642 345689999999999999999998875 22 233444332110
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHH-HhcCCcEEEEEecccCcc-------------cccccccCCC---CCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFR-SLREKRFVLLLDDIWERV-------------DLTKMGIPLS---GPKN 288 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~---~~~~ 288 (813)
. +.. ........+.. .-..++.+|+||+++... ....+...+. ....
T Consensus 156 ------------~---~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ------------K---WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ------------S---STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ------------c---ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 011 11222222222 224567899999995320 0111111110 1112
Q ss_pred CCcEEEEEcCccc-ccccC--CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCC-cchHHHHHH
Q 041248 289 TTSKVVFTTRFVD-VCGSM--EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGG-LPLALITIG 363 (813)
Q Consensus 289 ~~s~ilvTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 363 (813)
.+..||.||.... +.... .....+.+...+.++..+++...+........ .+....|++.+.| .+-.+..+.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 3455665665432 21110 22346788999999999998887643321111 3567788999988 455565554
No 183
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.04 E-value=3.6e-05 Score=80.64 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=103.1
Q ss_pred CcccchhHHHHHHHHHHh----------c--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLV----------E--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
..++|.+..++.|.+.+. . ...+-|.++|++|+|||+||+.+++.. ... .+.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 468999999999988772 1 134579999999999999999999876 222 2223221
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHH-HhcCCcEEEEEecccCccc-------------ccccccCCC--CCCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFR-SLREKRFVLLLDDIWERVD-------------LTKMGIPLS--GPKNT 289 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~--~~~~~ 289 (813)
.+ .... .. ..+.....+.. .-..++.+|++|+++.... ...+...+. .....
T Consensus 86 ~l----~~~~-------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DL----VSKW-------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HH----HTTT-------GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HH----hhcc-------cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 1100 11 12222333332 3345778999999964211 111111110 12234
Q ss_pred CcEEEEEcCcccccc-c--CCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc-chHHHHHH
Q 041248 290 TSKVVFTTRFVDVCG-S--MEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL-PLALITIG 363 (813)
Q Consensus 290 ~s~ilvTtR~~~v~~-~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 363 (813)
+..||.||....... . -.....+.++..+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666776543211 0 023456788999999999999998765432111 24567888888874 44454443
No 184
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=7.2e-06 Score=86.97 Aligned_cols=57 Identities=28% Similarity=0.335 Sum_probs=29.7
Q ss_pred hcCCCcccEEEeccCCcccccccCccccCCCCCCEEeecCCCCccc-chhhc--CCCCCcEEecc
Q 041248 561 FQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSLQLLDISHAGIREL-PEELK--LLVNLKCLNLR 622 (813)
Q Consensus 561 ~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L~~L~l~~~~i~~l-p~~~~--~l~~L~~L~l~ 622 (813)
+..+++|+.|+|++|. -..+|. +. +++|+.|+|..|.+..- ...+. .+++|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~---~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTN---NLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCB---TCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCC---Cceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 5566677777776662 123332 32 56666666666554311 11122 56666666664
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.02 E-value=6.1e-05 Score=79.25 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEecCccC
Q 041248 164 QSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESP-------------------TSFDCVIWAVVSKDLR 223 (813)
Q Consensus 164 ~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~ 223 (813)
+...+.+...+..++ ...+.++|+.|+|||++|+.+.+...... .+++. .++.....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~-- 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKG-- 84 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTT--
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEecccc--
Confidence 455667777776654 45799999999999999999988762111 01221 22221100
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--cccccccCCCCCCCCCcEEEEE
Q 041248 224 LEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-----REKRFVLLLDDIWERV--DLTKMGIPLSGPKNTTSKVVFT 296 (813)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~ilvT 296 (813)
......++ +..+.+.+ .+++-++|+|+++... ....+...+ .....++.+|++
T Consensus 85 ------------------~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~l-Eep~~~~~~Il~ 144 (334)
T 1a5t_A 85 ------------------KNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTL-EEPPAETWFFLA 144 (334)
T ss_dssp ------------------CSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHH-TSCCTTEEEEEE
T ss_pred ------------------CCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHh-cCCCCCeEEEEE
Confidence 00111222 12222222 3567899999997532 223333333 222345666666
Q ss_pred cCccc-ccc-cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 297 TRFVD-VCG-SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 297 tR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
|.+.. +.. ..+....++++++++++..+.+.+... -+ .+.+..+++.++|.|..+..+
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 65543 321 113345799999999999999988761 11 245678999999999766443
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.00 E-value=0.00014 Score=75.21 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=100.2
Q ss_pred CcccchhHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
..++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+.+++.. .. ..+.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 4689999999998887632 235689999999999999999999876 22 123333322110
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHH-HHhcCCcEEEEEecccCcccc-------------cccc---cCCC-CCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIF-RSLREKRFVLLLDDIWERVDL-------------TKMG---IPLS-GPK 287 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~-------------~~~~---~~l~-~~~ 287 (813)
. ... ........+. .....++.+|++|++.....- ..+. ..+. ...
T Consensus 93 ------------~---~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K---YVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S---SCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c---ccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 011 1222232222 233457789999999642110 0011 0110 011
Q ss_pred CCCcEEEEEcCcccccc-cC--CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch-HHHHHH
Q 041248 288 NTTSKVVFTTRFVDVCG-SM--EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL-ALITIG 363 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 363 (813)
+.+..||.||....... .. .....+.++..+.++...++...+.......+ ......|++.+.|.+- ++..+.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 23455666666543211 00 12346778888888888888776643221111 2456788899999875 554443
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.97 E-value=0.00017 Score=77.71 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=99.5
Q ss_pred CcccchhHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
..++|.+..++.+.+.+.. ...+.|.|+|++|+|||++|+.+++.. .. ..+.++.+.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 4689999999999887731 234689999999999999999998875 22 223333222110
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--------c-----ccccccCC---CCCCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--------D-----LTKMGIPL---SGPKNT 289 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~l---~~~~~~ 289 (813)
. ............+...-...+.+|+||+++... . ...+...+ ......
T Consensus 187 ~---------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 K---------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred c---------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 001111112222222223466899999996430 0 01111111 011123
Q ss_pred CcEEEEEcCcccccc-cC--CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch-HHHHHH
Q 041248 290 TSKVVFTTRFVDVCG-SM--EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL-ALITIG 363 (813)
Q Consensus 290 ~s~ilvTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 363 (813)
...||.||....... .+ .....+.+...+.++..+++...+........ .+....|++.+.|..- +|..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 345565665432211 00 12346888999999999999888754331111 2466789999988654 554443
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.97 E-value=5.6e-05 Score=80.21 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=101.0
Q ss_pred CcccchhHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
..++|.+..++.|.+.+.. ...+-|.++|++|+|||+||+.+++.. ... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 4689999999998887631 123468899999999999999999986 222 2223221
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc-------------ccccccCCC--CCCCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD-------------LTKMGIPLS--GPKNTT 290 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~--~~~~~~ 290 (813)
.+ .... ...........+...-..++.+|++|+++.... ...+...+. .....+
T Consensus 119 ~l----~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 DL----VSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp HH----HSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred HH----hhhh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 11 1110 111222222222223345789999999974311 111111110 112234
Q ss_pred cEEEEEcCcccccc-cC--CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc-chHHHHHH
Q 041248 291 SKVVFTTRFVDVCG-SM--EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL-PLALITIG 363 (813)
Q Consensus 291 s~ilvTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 363 (813)
..||.||....... .+ .....+.++..+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 55665665442211 00 23456788999999999999988765431111 24567888999884 44454443
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.96 E-value=4.3e-05 Score=80.25 Aligned_cols=172 Identities=10% Similarity=0.065 Sum_probs=98.1
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+..++.+.+++..+. ..++.+.|++|+|||++|+.+++.. . ...+.++.+.. ....+ +..+...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i-~~~~~~~- 96 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFV-RGPLTNF- 96 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHH-HTHHHHH-
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHH-HHHHHHH-
Confidence 568999999999999998654 3577788889999999999999876 1 12344443321 12211 1111110
Q ss_pred CCCCccCCCCHHHHHHHHHHH--hcCCcEEEEEecccCcc---cccccccCCCCCCCCCcEEEEEcCcccc-ccc-CCCC
Q 041248 237 LVDDSWKSKSVEEKALDIFRS--LREKRFVLLLDDIWERV---DLTKMGIPLSGPKNTTSKVVFTTRFVDV-CGS-MEAD 309 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~---~~~~~~~~l~~~~~~~s~ilvTtR~~~v-~~~-~~~~ 309 (813)
... ..+++.++++||++... ....+...+ .....+.++|+||....- ... ....
T Consensus 97 ------------------~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~l-e~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 97 ------------------ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFM-EAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp ------------------HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHH-HHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred ------------------HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHH-HhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 111 12467899999997543 222222222 111245677777765432 111 1123
Q ss_pred cceEcCCCCHHHHHHHHHH-------hhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 310 KKFQVACLSEEDAWELFRK-------KVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~-------~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
..+++++++.++-.+++.. .+.......++ .+....|++.++|.+..+
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHH
Confidence 4789999998885443322 22211111111 256778888898877643
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.94 E-value=0.00014 Score=75.23 Aligned_cols=174 Identities=16% Similarity=0.163 Sum_probs=98.8
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
..++|.+..++.+.+++.. ...+.|.|+|++|+|||+||+.+++.. ... .+.+ + .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~---~i~v--~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN---FISI--K----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE---EEEE--C----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC---EEEE--E----h
Confidence 4589999888888877642 345679999999999999999999976 222 2222 2 2
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------ccccccCCC-CCC
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD----------------LTKMGIPLS-GPK 287 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~ 287 (813)
..+.... .+.. . ......+.......+.++++|+++.... ...+...+. ...
T Consensus 83 ~~l~~~~---~g~~-----~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGES-----E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTTC-----T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCch-----H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2232222 1211 1 1122223333345789999999963110 111111110 012
Q ss_pred CCCcEEEEEcCccccc-cc-C---CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchH
Q 041248 288 NTTSKVVFTTRFVDVC-GS-M---EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLA 358 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (813)
..+..||.||...... .. . .....+.++..+.++-.+++...+.......+.+ ...+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 2355677777654321 11 1 2335788999999999999988775443222222 23556667777644
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=4.1e-05 Score=80.95 Aligned_cols=176 Identities=12% Similarity=0.171 Sum_probs=100.1
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEecCccCHHHHHHHHHHHcC
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFD-CVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
..++|.+..++.+...+..+..+.+.++|+.|+||||+|+.+++... ...+. .+..++.+.......+.. +
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir~-~----- 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVRN-Q----- 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHHT-H-----
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHHH-H-----
Confidence 35689988899988888876655589999999999999999998751 11111 112222221111111111 1
Q ss_pred CCCCccCCCCHHHHHHHHHHH---hcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCccc-ccc-cCCCC
Q 041248 237 LVDDSWKSKSVEEKALDIFRS---LREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVD-VCG-SMEAD 309 (813)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~---l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~-v~~-~~~~~ 309 (813)
+..+.+. +.+.+-++|+|++... .....+...+ .......++|++|.... +.. .....
T Consensus 97 --------------i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~l-e~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 97 --------------IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI-ERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp --------------HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHH-HHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred --------------HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHH-hcCCCCeEEEEEecCccccchhHHhhc
Confidence 1111110 1234678999998642 2222222222 11223556666664332 111 11223
Q ss_pred cceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHH
Q 041248 310 KKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLAL 359 (813)
Q Consensus 310 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (813)
..+.+.+++.++..+.+.+.+......-+ .+..+.|++.++|.+--+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 46889999999999988877633221122 256778999999988744
No 192
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.91 E-value=2.7e-05 Score=81.72 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=91.1
Q ss_pred HHHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCC
Q 041248 167 LEQVWRCLVEE--SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKS 244 (813)
Q Consensus 167 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (813)
...+...+... ....+.|+|++|+||||||+.+++..... .+ .+++++. ..+...+...+..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~-~~~~i~~------~~~~~~~~~~~~~------- 86 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GY-RVIYSSA------DDFAQAMVEHLKK------- 86 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TC-CEEEEEH------HHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CC-EEEEEEH------HHHHHHHHHHHHc-------
Confidence 34444544443 34679999999999999999999876211 12 2344543 2233333332210
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEecccCccc----ccccccCCCCCCCCCcEEEEEcCcccc---------cccCCCCcc
Q 041248 245 KSVEEKALDIFRSLREKRFVLLLDDIWERVD----LTKMGIPLSGPKNTTSKVVFTTRFVDV---------CGSMEADKK 311 (813)
Q Consensus 245 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~s~ilvTtR~~~v---------~~~~~~~~~ 311 (813)
... ..+...+. ++-+|++||+..... .+.+...+......+..||+||.+... ...+.....
T Consensus 87 ~~~----~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 87 GTI----NEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp TCH----HHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred CcH----HHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 011 11222222 356899999964321 122222210011235578887764321 111222356
Q ss_pred eEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchH
Q 041248 312 FQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLA 358 (813)
Q Consensus 312 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (813)
+++++ +.++..+++...+......-+ .+....|++.+ |.+-.
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 89999 999999999888743322222 35677888888 76643
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.88 E-value=0.00023 Score=77.81 Aligned_cols=181 Identities=17% Similarity=0.178 Sum_probs=100.8
Q ss_pred CcccchhHHHHHHHHHHh------------cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
..++|.+..++.|.+.+. ....+.|.++|++|+|||+||+.+++.. . .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~-~~-----~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS-----TFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C-SS-----EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C-CC-----CEEEEeHHH---
Confidence 468999999999888763 1234689999999999999999999875 1 11 123333221
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc-------------ccccccCCCC--CCCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD-------------LTKMGIPLSG--PKNTT 290 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~~ 290 (813)
+... ..+. ......... ...-..++.+|++|+++.... ...+...+.. ....+
T Consensus 204 -l~~~---~~g~-----~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 -LVSK---WLGE-----SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -HHhh---hcch-----HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 1110 0110 111222221 222245788999999974310 1112112201 12345
Q ss_pred cEEEEEcCcccccc---cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc-chHHHHHH
Q 041248 291 SKVVFTTRFVDVCG---SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL-PLALITIG 363 (813)
Q Consensus 291 s~ilvTtR~~~v~~---~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 363 (813)
..||.||....... .......+.++..+.++...+|...+........ ......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666665443211 0023356788888999999999888754331111 24567888899884 44454443
No 194
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.88 E-value=1.4e-05 Score=76.16 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=41.4
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987667788999999999999999998876
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.74 E-value=0.00019 Score=79.16 Aligned_cols=150 Identities=14% Similarity=0.154 Sum_probs=81.6
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCC--CCC-C-EEEEEEecCccCHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESP--TSF-D-CVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~f-~-~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
..++||+.+++.+...+......-+.++|++|+|||++|+.+++...... ... + .++.++.+ ..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------~~ 247 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------TK 247 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------cc
Confidence 35899999999999999776666778999999999999999988752110 000 1 12222222 00
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCcccc------c-ccC
Q 041248 234 KIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDV------C-GSM 306 (813)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v------~-~~~ 306 (813)
..+ . ........ +...-..++.++++|. .......+...+ . ....++|.+|..... . ...
T Consensus 248 ~~g----~-~e~~~~~~---~~~~~~~~~~iLfiD~--~~~a~~~L~~~L-~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 248 YRG----E-FEDRLKKV---MDEIRQAGNIILFIDA--AIDASNILKPSL-A--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp ----------CTTHHHH---HHHHHTCCCCEEEECC----------CCCT-T--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ccc----h-HHHHHHHH---HHHHHhcCCeEEEEeC--chhHHHHHHHhh-c--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 000 0 01111122 2222235678888991 111112222222 1 223556665554431 1 011
Q ss_pred CCCcceEcCCCCHHHHHHHHHHhhCC
Q 041248 307 EADKKFQVACLSEEDAWELFRKKVGE 332 (813)
Q Consensus 307 ~~~~~~~l~~L~~~~~~~Lf~~~~~~ 332 (813)
.....+.++..+.++..+++......
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHHH
Confidence 12236899999999999999976643
No 196
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.73 E-value=4.2e-05 Score=81.08 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=70.9
Q ss_pred CCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccc-cCccc--cCCCCCCEEeecCC--------CCcc
Q 041248 537 PTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLK-LPFGM--SKLGSLQLLDISHA--------GIRE 605 (813)
Q Consensus 537 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-lp~~i--~~L~~L~~L~l~~~--------~i~~ 605 (813)
..+|+|+.|.++++..+ .++. + .+++|+.|++..| .+.. ....+ ..+++|++|+|+.+ .+..
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~---~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISG---GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECS---BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecC---CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 45667777777654222 2332 2 2667777777766 3321 01122 25677777776421 1222
Q ss_pred cchhh--cCCCCCcEEeccCcccccccchhhh--cCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCc
Q 041248 606 LPEEL--KLLVNLKCLNLRWTRMLNKIPRLLI--SNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLE 681 (813)
Q Consensus 606 lp~~~--~~l~~L~~L~l~~~~~l~~lp~~~i--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 681 (813)
+...+ ..+++|++|++++|......+..+. ..+++|++|+++.|.+... ........+..+++|+
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~-----------G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE-----------GARLLLDHVDKIKHLK 310 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH-----------HHHHHHTTHHHHTTCS
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH-----------HHHHHHhhcccCCcce
Confidence 22222 2467777777777643222222211 2466777777776554321 0112344556677777
Q ss_pred EEEEEEcchh
Q 041248 682 VLELTLRSYD 691 (813)
Q Consensus 682 ~L~l~~~~~~ 691 (813)
.|+++.|.+.
T Consensus 311 ~L~L~~n~i~ 320 (362)
T 2ra8_A 311 FINMKYNYLS 320 (362)
T ss_dssp EEECCSBBCC
T ss_pred EEECCCCcCC
Confidence 7777777654
No 197
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.72 E-value=0.00086 Score=70.40 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=91.6
Q ss_pred CcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIG 232 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (813)
..++|.+..++.+...+.. .....+.++|++|+||||||+.+++.. ...|. . .+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~--~sg~~~--------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---V--TSGPVL--------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---E--EETTTC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---E--EechHh---------
Confidence 4578988877777766643 234679999999999999999999976 22221 1 111100
Q ss_pred HHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--cccccccCCC--C-C----CC----------CCcEE
Q 041248 233 KKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--DLTKMGIPLS--G-P----KN----------TTSKV 293 (813)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~--~-~----~~----------~~s~i 293 (813)
....+. ..+...+. ++-++++|++.... ..+.+...+. . . .+ ....+
T Consensus 88 ------------~~~~~l-~~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 88 ------------VKQGDM-AAILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ------------CSHHHH-HHHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ------------cCHHHH-HHHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 001111 11111222 33466778875321 1111100000 0 0 00 01122
Q ss_pred -EEEcCcccccccC--CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHHH
Q 041248 294 -VFTTRFVDVCGSM--EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALITI 362 (813)
Q Consensus 294 -lvTtR~~~v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (813)
-.|++...+.... .....+.+++.+.++-.+++.+.+.......+ .+.+..|++.++|.|-.+..+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~---~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE---DAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHTSTTCHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHhcCCChHHHHHH
Confidence 2355543332111 11235789999999999999887642221111 356889999999999755433
No 198
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00029 Score=74.39 Aligned_cols=171 Identities=18% Similarity=0.249 Sum_probs=99.8
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
.++.|-++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ...| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 3578888888888776531 245678899999999999999999987 2322 3333322110
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHH-HHhcCCcEEEEEecccCcc----------c------ccccccCCCC-C
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIF-RSLREKRFVLLLDDIWERV----------D------LTKMGIPLSG-P 286 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~----------~------~~~~~~~l~~-~ 286 (813)
.+.+.+ +..+..+. ..-...+++|.+|+++... + ...+...+.. .
T Consensus 221 ----------------k~vGes-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 ----------------KYIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ----------------SSTTHH-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ----------------cccchH-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 011112 22222232 3335678999999996421 0 1111111101 2
Q ss_pred CCCCcEEEEEcCccccc-----ccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 287 KNTTSKVVFTTRFVDVC-----GSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 287 ~~~~s~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
...+..||.||...... +.-.-+..+.++.-+.++-.++|..+........+-+ ...|++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 23344556666654432 1113467889999999999999988876544333333 456778888754
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.00015 Score=74.75 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=86.6
Q ss_pred chhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEecC-ccCHHHHHHHHHHHcCCCC
Q 041248 162 GLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESP-TSFDCVIWAVVSK-DLRLEKIQEDIGKKIGLVD 239 (813)
Q Consensus 162 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 239 (813)
|-++.++.+...+..+......++|+.|+||||+|+.+.+...... .+.+. .++..+. ...++.+ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 3455667777777766677899999999999999999987531111 23333 4444332 2233222 33444333211
Q ss_pred CccCCCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCcc-cccccCCCCcceEcCC
Q 041248 240 DSWKSKSVEEKALDIFRSLREKRFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFV-DVCGSMEADKKFQVAC 316 (813)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~l~~ 316 (813)
..+++-++|+|+++.. .....+...+ -.....+.+|++|.+. .+......- .+++++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~L-Eep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKAL-EEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHH-HSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHH-hCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 1245778999999753 2233333333 2223456666655433 343323223 899999
Q ss_pred CCHHHHHHHHHHhh
Q 041248 317 LSEEDAWELFRKKV 330 (813)
Q Consensus 317 L~~~~~~~Lf~~~~ 330 (813)
+++++..+.+.+..
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 200
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.67 E-value=3.8e-05 Score=77.10 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=53.6
Q ss_pred cCCCcccEEEeccCCccccccc---CccccCCCCCCEEeecCCCCcccchhhcCCC--CCcEEeccCcccccccch----
Q 041248 562 QCMPSLKVLKMSNCGHVKVLKL---PFGMSKLGSLQLLDISHAGIRELPEELKLLV--NLKCLNLRWTRMLNKIPR---- 632 (813)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~l---p~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~~l~~lp~---- 632 (813)
..+++|+.|+|++| .++.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|+.-..+|.
T Consensus 167 ~~l~~L~~L~Ls~N---~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNN---RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTS---CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCC---CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 45777888888887 55543 45556778888888888877766 3344444 788888888754343441
Q ss_pred --hhhcCCCCCceeecc
Q 041248 633 --LLISNSSWLRVLRMF 647 (813)
Q Consensus 633 --~~i~~L~~L~~L~l~ 647 (813)
.++..+++|+.|+-.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 246677777777644
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.66 E-value=0.00048 Score=75.84 Aligned_cols=176 Identities=17% Similarity=0.174 Sum_probs=100.6
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 159 TIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.++|.+..++++.+.+.. ....-|.|+|++|+|||++|+.+++.. ... .+.++++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~------ 272 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP------ 272 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHH------
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEch------
Confidence 579999999998887642 345679999999999999999998875 222 2333321
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc-------------cccccccCCC-CCCCCCc
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV-------------DLTKMGIPLS-GPKNTTS 291 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~-~~~~~~s 291 (813)
.+...+ ...........+.....+++.+|+||+++... ....+...+. .....+.
T Consensus 273 ----~l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 273 ----EIMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp ----HHHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred ----Hhhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 111111 11122223333444456778999999994210 0111111110 0122345
Q ss_pred EEEEEcCccc-ccccC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc-chHHHH
Q 041248 292 KVVFTTRFVD-VCGSM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL-PLALIT 361 (813)
Q Consensus 292 ~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~ 361 (813)
.||.||.... +...+ .....+.+...+.++-.+++...+.......+.. ..++++.+.|. +-.+..
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHH
Confidence 6666666442 21111 2334688999999999999998876543222222 34566677764 434433
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.64 E-value=0.00014 Score=86.69 Aligned_cols=155 Identities=15% Similarity=0.214 Sum_probs=83.8
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccc--CCCC--CCEEEEEEecCccCHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLE--SPTS--FDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~--~~~~--f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
..++||+.++.++.+.+.......+.++|.+|+|||++|+.+++.... +... -..++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 458999999999999998766667899999999999999999887521 1111 11234443321100
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhc--CCcEEEEEecccCccc-------cc--ccccCCCCCCCCCcEEEEEcCcccc
Q 041248 234 KIGLVDDSWKSKSVEEKALDIFRSLR--EKRFVLLLDDIWERVD-------LT--KMGIPLSGPKNTTSKVVFTTRFVDV 302 (813)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-------~~--~~~~~l~~~~~~~s~ilvTtR~~~v 302 (813)
+.. ...........+...+. +++.+|++|++..... ++ .+..++ .. ..+..+|.+|.....
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~-l~-~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPA-LA-RGELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHH-HH-TTCCCEEEEECHHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHH-Hh-CCCeEEEEecCchHH
Confidence 000 01122333333333332 3688999999964310 11 111111 01 123345554443221
Q ss_pred -----c-ccCCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 303 -----C-GSMEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 303 -----~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
. ........+.+++++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1 111223458999999999999987543
No 203
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=4e-05 Score=71.21 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=10.0
Q ss_pred cccCcceEeeccCcCCCc
Q 041248 761 VFRSLHRVTMERCHKLKD 778 (813)
Q Consensus 761 ~l~~L~~L~l~~c~~l~~ 778 (813)
.+++|++|+|++|+.+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 455555555555555554
No 204
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.61 E-value=0.00044 Score=74.65 Aligned_cols=214 Identities=14% Similarity=0.098 Sum_probs=104.7
Q ss_pred CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeecCCCCcccchhhcCCC
Q 041248 536 VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDISHAGIRELPEELKLLV 614 (813)
Q Consensus 536 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~~~~i~~lp~~~~~l~ 614 (813)
+..|++|+.+.+.. .+..++...|.++.+|+.+++..+ ++.+ ...+.++..|+.+.+..+ +..+........
T Consensus 158 F~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~----~~~I~~~~F~~~~~L~~i~~~~~-~~~i~~~~~~~~ 230 (394)
T 4fs7_A 158 FATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN----LKIIRDYCFAECILLENMEFPNS-LYYLGDFALSKT 230 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT----CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred hcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC----ceEeCchhhccccccceeecCCC-ceEeehhhcccC
Confidence 45666666666652 244566666666666666666543 2333 234555566666655443 222223333445
Q ss_pred CCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchhhHH
Q 041248 615 NLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYDALQ 694 (813)
Q Consensus 615 ~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 694 (813)
+|+.+.+..+ +..+....+..+.+|+.+.+..+.. .+ ....+..+..|+.+........
T Consensus 231 ~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~-~i---------------~~~~F~~~~~l~~~~~~~~~i~--- 289 (394)
T 4fs7_A 231 GVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKL-RI---------------GGSLFYNCSGLKKVIYGSVIVP--- 289 (394)
T ss_dssp CCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTC-EE---------------CSCTTTTCTTCCEEEECSSEEC---
T ss_pred CCceEEECCC--ceecccccccccccceeEEcCCCcc-ee---------------eccccccccccceeccCceeec---
Confidence 5666665443 3445544456666666666543211 00 0112334444444433211110
Q ss_pred hhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCc
Q 041248 695 FFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCH 774 (813)
Q Consensus 695 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 774 (813)
. .....+.+|+.+.+.. .++.+...+|..+.+|+.+.|. ..++.+....+. ++.+|+.+.+...
T Consensus 290 ~--~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~---------~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 290 E--KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFR---------GCTSLSNINFPLS- 353 (394)
T ss_dssp T--TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC--TTCCEECTTTTT---------TCTTCCEECCCTT-
T ss_pred c--cccccccccccccccc--ccceechhhhcCCCCCCEEEeC--CcccEEhHHhcc---------CCCCCCEEEECcc-
Confidence 0 0111223555555543 3444444456666677777664 235544333332 5666777766542
Q ss_pred CCCccc--chhcCCCCceEeee
Q 041248 775 KLKDLT--FLVCAPSLKSLSLY 794 (813)
Q Consensus 775 ~l~~l~--~l~~l~~L~~L~l~ 794 (813)
++.++ .+..+++|+.+++.
T Consensus 354 -l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 354 -LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp -CCEECTTTBTTCTTCCEEEEE
T ss_pred -ccEehHHHhhCCCCCCEEEEC
Confidence 55554 34556677777664
No 205
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=1.3e-05 Score=80.58 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=58.4
Q ss_pred cCCCcccE--EEeccCCcccccccCcc----ccCCCCCCEEeecCCCCcccc---hhhcCCCCCcEEeccCcccccccch
Q 041248 562 QCMPSLKV--LKMSNCGHVKVLKLPFG----MSKLGSLQLLDISHAGIRELP---EELKLLVNLKCLNLRWTRMLNKIPR 632 (813)
Q Consensus 562 ~~l~~L~~--L~l~~~~~~~~~~lp~~----i~~L~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~l~~lp~ 632 (813)
...+.|+. ++++.| ....++.. ..++++|+.|+|++|.|+.++ ..+..+++|++|+|++| .+..+..
T Consensus 138 ~~dp~L~~~~l~l~~N---~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~ 213 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLN---RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE 213 (267)
T ss_dssp GGCHHHHHTTCCCCTT---SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG
T ss_pred CCCcchhhcCccccCC---HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh
Confidence 33344444 455555 33333322 246789999999999887654 56778999999999998 5666633
Q ss_pred hhhcCCC--CCceeeccccccCC
Q 041248 633 LLISNSS--WLRVLRMFAIGFEN 653 (813)
Q Consensus 633 ~~i~~L~--~L~~L~l~~~~~~~ 653 (813)
+..+. +|++|.+.+|.+.+
T Consensus 214 --l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 214 --LDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp --GGGGTTSCCSEEECTTSTTGG
T ss_pred --hhhcccCCcceEEccCCcCcc
Confidence 45555 89999999887653
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.60 E-value=2.1e-05 Score=75.03 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=57.0
Q ss_pred hcCCCcccEEEeccCCccc---ccccCccccCCCCCCEEeecCCCCcc-----cchhhcCCCCCcEEeccCcccccc---
Q 041248 561 FQCMPSLKVLKMSNCGHVK---VLKLPFGMSKLGSLQLLDISHAGIRE-----LPEELKLLVNLKCLNLRWTRMLNK--- 629 (813)
Q Consensus 561 ~~~l~~L~~L~l~~~~~~~---~~~lp~~i~~L~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~--- 629 (813)
+...+.|+.|+|++|..+. ...+...+...++|++|+|++|.|.. +...+...++|++|+|++|. +..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence 3444555555555541111 11223334444556666666655542 33334445566666666663 322
Q ss_pred --cchhhhcCCCCCceeec--cccccCCCCCCCccccccCCccchhHHhhcCCCCcEEEEEEcchh
Q 041248 630 --IPRLLISNSSWLRVLRM--FAIGFENSEEPSEDSVLIGGGEVLVHELLGLRYLEVLELTLRSYD 691 (813)
Q Consensus 630 --lp~~~i~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 691 (813)
+... +...++|++|++ ..|.+... ........+...++|+.|+++.|.+.
T Consensus 111 ~~l~~~-L~~n~~L~~L~L~~~~N~i~~~-----------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEA-LQSNTSLIELRIDNQSQPLGNN-----------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHG-GGGCSSCCEEECCCCSSCCCHH-----------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHH-HHhCCCceEEEecCCCCCCCHH-----------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2332 455566666666 44443221 01112234555677777777766654
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.59 E-value=8.1e-05 Score=67.70 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=36.0
Q ss_pred cccchhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|+...++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999998887753 334567899999999999999998865
No 208
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00035 Score=75.09 Aligned_cols=172 Identities=16% Similarity=0.220 Sum_probs=98.3
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
.++.|-++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 3578888888888776531 245789999999999999999999987 222 23333322110
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--------c--------ccccccCCC-CCC
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--------D--------LTKMGIPLS-GPK 287 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--------~~~~~~~l~-~~~ 287 (813)
.+.+.........+...-...+++|.+|+++... . +..+...+- ...
T Consensus 254 ----------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 ----------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ----------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ----------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 0112222222222233335678999999996321 0 111111110 122
Q ss_pred CCCcEEEEEcCcccccc-cC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 288 NTTSKVVFTTRFVDVCG-SM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
..+..||.||....... .+ .-...|.++.-+.++-.++|..+........+.+ ...|++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 23456676776544321 11 1345788888888888888887765443222233 356777887754
No 209
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00067 Score=71.85 Aligned_cols=170 Identities=18% Similarity=0.240 Sum_probs=96.8
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 159 TIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
++.|-++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ...| +.+..+.-.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELI--- 253 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGC---
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhh---
Confidence 567888888888776531 245779999999999999999999987 2222 223322110
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHH-HhcCCcEEEEEecccCccc----------------ccccccCCC-CCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFR-SLREKRFVLLLDDIWERVD----------------LTKMGIPLS-GPK 287 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~ 287 (813)
..+...+ +..+..+.. .-...+++|.+|+++.... +..+...+- ...
T Consensus 254 --------------sk~vGes-ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 --------------QKYLGDG-PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp --------------CSSSSHH-HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred --------------hccCchH-HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0011112 222333333 3346789999999863200 001111110 122
Q ss_pred CCCcEEEEEcCcccccc-cC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 288 NTTSKVVFTTRFVDVCG-SM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
..+..||.||....... .+ .-+..|.++.-+.++-.++|..+........+.+ ...|++.+.|.-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 23445666666544321 11 2234678888888888999988876544333333 356777787754
No 210
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00053 Score=73.41 Aligned_cols=171 Identities=17% Similarity=0.178 Sum_probs=98.6
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 159 TIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
++.|-++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~--- 280 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELV--- 280 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGC---
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhh---
Confidence 578888888888775421 356788999999999999999999987 222 2333322110
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------ccccccCCC-CCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD----------------LTKMGIPLS-GPKN 288 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~~ 288 (813)
..+.+.+.......+...-...+++|++|+++.... ...+...+. ....
T Consensus 281 --------------sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 281 --------------QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp --------------CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred --------------cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 001122222222223333356789999999963210 001111110 1122
Q ss_pred CCcEEEEEcCccccc-----ccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 289 TTSKVVFTTRFVDVC-----GSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 289 ~~s~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
.+..||.||...... +.-.-...++++..+.++-.++|..++.......+-+ ...|++.|.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 344556666544332 1113456788988999999999988876544333323 356778888764
No 211
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.54 E-value=9.8e-05 Score=75.07 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=35.6
Q ss_pred CcccchhHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+.+.+.. ...+-+.|+|++|+|||++|+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4689988887777765531 123447899999999999999999876
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00028 Score=75.72 Aligned_cols=171 Identities=18% Similarity=0.257 Sum_probs=96.6
Q ss_pred CcccchhHHHHHHHHHHh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLV----E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
.++.|-++.+++|.+.+. . ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~-- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLV-- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGC--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhh--
Confidence 357899998888887643 1 246789999999999999999999987 222 2333322210
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH-HhcCCcEEEEEecccCc-------cc---------ccccccCCCC-C
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR-SLREKRFVLLLDDIWER-------VD---------LTKMGIPLSG-P 286 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------~~---------~~~~~~~l~~-~ 286 (813)
..+.+.. +..+..+.. .-...+++|++|+++.. .. ...+...+.. .
T Consensus 253 ---------------~~~vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 253 ---------------QMYIGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ---------------SSCSSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ---------------hcccchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 0011111 222233322 33457899999998531 00 1111111101 1
Q ss_pred CCCCcEEEEEcCcccccc-cC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 287 KNTTSKVVFTTRFVDVCG-SM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 287 ~~~~s~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
...+..||.||....... .+ .-...+.++..+.++-.++|..+........+-+ ...|++.+.|.-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 223445666776554422 11 2345788988898888888877664332222222 356777887753
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.51 E-value=0.0021 Score=64.67 Aligned_cols=176 Identities=18% Similarity=0.172 Sum_probs=93.4
Q ss_pred CcccchhHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
..++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++.. ...| +.+..+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 468999888777665432 1 123468899999999999999999876 2222 2332211100
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------ccccccCCCC-CCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD----------------LTKMGIPLSG-PKN 288 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~ 288 (813)
.............+.......+.++++|+++.... ...+...+.. ...
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00112222233333334445678999999842100 0111111100 122
Q ss_pred CCcEEEEEcCccccc-ccC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCC-cchHHH
Q 041248 289 TTSKVVFTTRFVDVC-GSM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGG-LPLALI 360 (813)
Q Consensus 289 ~~s~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~ 360 (813)
.+..||.||...... ... .....+.++..+.++-.+++...........+.. ...++..+.| .+--+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 345666666654321 111 1234677888888888888877764432222211 3356667777 554443
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00081 Score=72.10 Aligned_cols=172 Identities=17% Similarity=0.204 Sum_probs=92.8
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
.++.|-+..+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc-
Confidence 3678899888888776531 245679999999999999999999987 222 23333322110
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc----------c------ccccccCCC-CCC
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV----------D------LTKMGIPLS-GPK 287 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~------~~~~~~~l~-~~~ 287 (813)
.+.+.....+...+...-...++++++|+++... + ...+...+. ...
T Consensus 245 ----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 0111222222222233335678999999985210 0 111111110 012
Q ss_pred CCCcEEEEEcCccccc-----ccCCCCcceEcCCCC-HHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 288 NTTSKVVFTTRFVDVC-----GSMEADKKFQVACLS-EEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~-----~~~~~~~~~~l~~L~-~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
..+..||.||...... +...-...|+++.++ .++-..+|..+........+.+ ...|++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 3345566677654431 111233567887665 4555556666554333222223 356777787753
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.43 E-value=0.00071 Score=79.64 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=82.7
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC---CCE-EEEEEecCccCHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTS---FDC-VIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~---f~~-~~wv~~~~~~~~~~~~~~i~~ 233 (813)
..++||+.+++++...+......-+.++|++|+|||++|+.+++........ .+. .+.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 3589999999999999987666678999999999999999998875211111 111 111111
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccccCCCCCCCCCcEEEEEcCcccc------cc-cC
Q 041248 234 KIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVDLTKMGIPLSGPKNTTSKVVFTTRFVDV------CG-SM 306 (813)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~ilvTtR~~~v------~~-~~ 306 (813)
+....+....... ..+......++.+|++|.- ......+...+ . ....++|.||..... .. ..
T Consensus 245 --g~~~~G~~e~~l~---~~~~~~~~~~~~iLfiD~~--~~~~~~L~~~l-~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 --GTKYRGEFEDRLK---KVMDEIRQAGNIILFIDAA--IDASNILKPSL-A--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp ----------CTTHH---HHHHHHHTCCCCEEEECC----------CCCT-T--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --cccccchHHHHHH---HHHHHHHhcCCEEEEEcCc--hhHHHHHHHHH-h--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 0000000011112 2222233357788999921 11112222222 1 234566666654441 00 00
Q ss_pred CCCcceEcCCCCHHHHHHHHHHhhCC
Q 041248 307 EADKKFQVACLSEEDAWELFRKKVGE 332 (813)
Q Consensus 307 ~~~~~~~l~~L~~~~~~~Lf~~~~~~ 332 (813)
.....+.++..+.++..+++......
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 12246899999999999999976543
No 216
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.42 E-value=0.00094 Score=78.72 Aligned_cols=155 Identities=18% Similarity=0.279 Sum_probs=89.1
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC---CCCEEEEE-EecCccCHHHHHHHHHH
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPT---SFDCVIWA-VVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~---~f~~~~wv-~~~~~~~~~~~~~~i~~ 233 (813)
..++||+.+++++.+.+......-+.++|.+|+|||++|+.+++....... .....+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 358999999999999998766777899999999999999999887521110 11223221 11110
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhc-CCcEEEEEecccCc----------ccccccccCCCCCCCCCcEEEEEcCcccc
Q 041248 234 KIGLVDDSWKSKSVEEKALDIFRSLR-EKRFVLLLDDIWER----------VDLTKMGIPLSGPKNTTSKVVFTTRFVDV 302 (813)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~~s~ilvTtR~~~v 302 (813)
+.. .. .....+.....+...+. .++.++++|++... .+...+...+ .. ..+..+|.+|.....
T Consensus 254 -~~~--~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~-l~-~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 -LAG--TK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-LS-SGKIRVIGSTTYQEF 327 (758)
T ss_dssp --CC--CC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC-SS-SCCCEEEEEECHHHH
T ss_pred -hcc--cc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH-Hh-CCCeEEEEEeCchHH
Confidence 000 00 11233444444444443 46789999999643 1111122222 11 234566666654332
Q ss_pred cc-------cCCCCcceEcCCCCHHHHHHHHHHhh
Q 041248 303 CG-------SMEADKKFQVACLSEEDAWELFRKKV 330 (813)
Q Consensus 303 ~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~ 330 (813)
.. .......+.++..+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 11 11112368899999999988887654
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.42 E-value=8.9e-05 Score=70.57 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=77.5
Q ss_pred CCCCCceeEEEeeecccccccc----chhhcCCCcccEEEeccCCcccccc-----cCccccCCCCCCEEeecCCCCcc-
Q 041248 536 VPTCPHLLTLFLDFNYKLEMIT----DGFFQCMPSLKVLKMSNCGHVKVLK-----LPFGMSKLGSLQLLDISHAGIRE- 605 (813)
Q Consensus 536 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~i~~- 605 (813)
+...+.|++|++++|..+..-. ...+...++|++|+|++| .+.. +...+...+.|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n---~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT---RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS---CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC---CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 4567888889988442443311 122566788999999999 5542 34455566889999999998874
Q ss_pred ----cchhhcCCCCCcEEec--cCcccccc-----cchhhhcCCCCCceeecccccc
Q 041248 606 ----LPEELKLLVNLKCLNL--RWTRMLNK-----IPRLLISNSSWLRVLRMFAIGF 651 (813)
Q Consensus 606 ----lp~~~~~l~~L~~L~l--~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~ 651 (813)
+...+...++|++|++ ++|. +.. +... +...++|++|+++.|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANM-LEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHH-HHhCCCcCEEeccCCCC
Confidence 5666778889999999 6673 332 3333 66678899999987654
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.41 E-value=0.00079 Score=69.90 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHHhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE--------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999988877753 234578899999999999999999876
No 219
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.40 E-value=7.4e-05 Score=70.83 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 163 LQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 163 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....++.+.+++.+ .....+.|+|++|+||||||+.+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445555555543 235789999999999999999998876
No 220
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.38 E-value=0.0008 Score=73.45 Aligned_cols=172 Identities=17% Similarity=0.174 Sum_probs=95.8
Q ss_pred CcccchhHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.+++|.+..++++.+.+. . ...+-|.|+|++|+|||+||+.+++.. ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 468999887777766543 1 123458899999999999999999976 2222 23332221100
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc----------------cccccccCCCC-CCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV----------------DLTKMGIPLSG-PKN 288 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~~ 288 (813)
+...........+.....+.+.+|++|+++... .+..+...+.. ...
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 011111222233344445678999999995421 01111111100 112
Q ss_pred CCcEEEEEcCcccccc-c-C---CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 289 TTSKVVFTTRFVDVCG-S-M---EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 289 ~~s~ilvTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
.+..||.||....... . . .-...+.++..+.++-.+++..++.......+.+ ...|++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 3456666766554321 1 1 2234788888888888888887765433222222 345778888876
No 221
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.36 E-value=0.0029 Score=68.18 Aligned_cols=250 Identities=10% Similarity=0.171 Sum_probs=124.9
Q ss_pred eeEEecccccccccc--cCCCCCceeEEEeeec--cccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCC
Q 041248 520 VRRLSLMQNQIEILS--EVPTCPHLLTLFLDFN--YKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQ 594 (813)
Q Consensus 520 ~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~ 594 (813)
++.+.+.. .++.+. .+.+|.+|+.+.+..+ ..+..++..+|..+..|+.+.+..+ ++.++ ..+.++.+|+
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~----~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS----VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT----CSEECTTTTTTCTTCC
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc----cceehhhhhhhhcccc
Confidence 56666643 244442 3678888888888643 2466777777877777777666543 33443 3456667777
Q ss_pred EEeecCCCCcccch-hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccc-----------------------cc
Q 041248 595 LLDISHAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFA-----------------------IG 650 (813)
Q Consensus 595 ~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~-----------------------~~ 650 (813)
.+.+..+ +..++. .+..+.+|+.+.+..+ +..+....+. .++|+.+.+.. ..
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSS
T ss_pred cccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccc
Confidence 7777543 333332 2455666666666543 3444443332 23444444321 11
Q ss_pred cCCCCCC-------------------Cc-cccccCC-ccchhHHhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceee
Q 041248 651 FENSEEP-------------------SE-DSVLIGG-GEVLVHELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSL 709 (813)
Q Consensus 651 ~~~~~~~-------------------~~-~~~~~~~-~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 709 (813)
....... .. ...++.. ..-.-..+.++.+|+.+.+..+- ..+.. .....+..|+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~--~aF~~c~~L~~i 293 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGT--GAFMNCPALQDI 293 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECT--TTTTTCTTCCEE
T ss_pred cccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecC--cccccccccccc
Confidence 1100000 00 0000000 00001223444555555442110 00000 001112345555
Q ss_pred eecccCCcccccccccccccccceeeecccCccceeeecccccCCCCCCcccccCcceEeeccCcCCCccc--chhcCCC
Q 041248 710 FLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEIAPKRSEPFVFRSLHRVTMERCHKLKDLT--FLVCAPS 787 (813)
Q Consensus 710 ~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~ 787 (813)
.+.. .+..+....|..+.+|+.+.|.. +++.+....+. .+.+|+.+.|-+ .++.+. .+..+++
T Consensus 294 ~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~---------~C~~L~~i~ip~--sv~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 294 EFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFA---------GCEQLERIAIPS--SVTKIPESAFSNCTA 358 (394)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT---------TCTTCCEEEECT--TCCBCCGGGGTTCTT
T ss_pred cCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhh---------CCCCCCEEEECc--ccCEEhHhHhhCCCC
Confidence 5532 34445445566777777777753 35544333333 678888888854 366666 3567888
Q ss_pred CceEeeecC
Q 041248 788 LKSLSLYGC 796 (813)
Q Consensus 788 L~~L~l~~c 796 (813)
|+.+++.+.
T Consensus 359 L~~i~~~~~ 367 (394)
T 4gt6_A 359 LNNIEYSGS 367 (394)
T ss_dssp CCEEEESSC
T ss_pred CCEEEECCc
Confidence 888888753
No 222
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.35 E-value=0.0011 Score=71.39 Aligned_cols=213 Identities=16% Similarity=0.134 Sum_probs=137.4
Q ss_pred CccceeEEecccccccccc--cCCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccCccccCCCCC
Q 041248 516 GWENVRRLSLMQNQIEILS--EVPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLPFGMSKLGSL 593 (813)
Q Consensus 516 ~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp~~i~~L~~L 593 (813)
....++.+.+..+ +..+. .+..+.+|+.+.+.. .+..++...|.++..|+.+.+..+ ...+.........|
T Consensus 160 ~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~----~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 160 TCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNS----LYYLGDFALSKTGV 232 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTT----CCEECTTTTTTCCC
T ss_pred ccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCC----ceEeehhhcccCCC
Confidence 3456777777543 33332 367889999998863 377888888999999998888765 22333344455778
Q ss_pred CEEeecCCCCcccch-hhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccCCCCCCCccccccCCccchhH
Q 041248 594 QLLDISHAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFENSEEPSEDSVLIGGGEVLVH 672 (813)
Q Consensus 594 ~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (813)
+.+.+..+ ++.++. .+..+.+|+.+.+..+ +..++...+..+.+|+.+....+.+.. .
T Consensus 233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~------------------~ 291 (394)
T 4fs7_A 233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPE------------------K 291 (394)
T ss_dssp CEEEECTT-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECT------------------T
T ss_pred ceEEECCC-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeecc------------------c
Confidence 88888654 344433 3677888999988765 355666668888888887765322111 2
Q ss_pred HhhcCCCCcEEEEEEcchhhHHhhhcchhhhhcceeeeecccCCcccccccccccccccceeeecccCccceeeeccccc
Q 041248 673 ELLGLRYLEVLELTLRSYDALQFFLSSNKLKSCIRSLFLNKLGGTKSIHATAFSDLKHLNELCIRSAVELEELKVDYTEI 752 (813)
Q Consensus 673 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 752 (813)
.+..+.+|+.+.+..+ ...+... ....+.+|+.+.|.. .++.+...+|.++.+|+.+.+.. +++.+....+.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~--aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~- 363 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEE--AFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQ- 363 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTT--TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBT-
T ss_pred cccccccccccccccc-cceechh--hhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhh-
Confidence 3566777777766421 2111111 122245788888753 46666656788889999998863 36655444443
Q ss_pred CCCCCCcccccCcceEeecc
Q 041248 753 APKRSEPFVFRSLHRVTMER 772 (813)
Q Consensus 753 ~~~~~~~~~l~~L~~L~l~~ 772 (813)
.+++|+.+++.+
T Consensus 364 --------~C~~L~~i~lp~ 375 (394)
T 4fs7_A 364 --------GCINLKKVELPK 375 (394)
T ss_dssp --------TCTTCCEEEEEG
T ss_pred --------CCCCCCEEEECC
Confidence 788999998865
No 223
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.29 E-value=0.00063 Score=65.65 Aligned_cols=113 Identities=22% Similarity=0.196 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc
Q 041248 166 QLEQVWRCLVEE----SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS 241 (813)
Q Consensus 166 ~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 241 (813)
.++.+.+++... ....+.|+|++|+|||+||+.+++... .....++|+++ ..+...+......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~---- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV------PELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH------HHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh------HHHHHHHHHHhcc----
Confidence 445555555543 127899999999999999999999872 22234556544 2444444433221
Q ss_pred cCCCCHHHHHHHHHHHhcCCcEEEEEecccC--cccccc--ccc-CCCCCCCCCcEEEEEcCc
Q 041248 242 WKSKSVEEKALDIFRSLREKRFVLLLDDIWE--RVDLTK--MGI-PLSGPKNTTSKVVFTTRF 299 (813)
Q Consensus 242 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~--~~~-~l~~~~~~~s~ilvTtR~ 299 (813)
......... +... -+|||||++. ...|.. +.. .+......+.++|+||..
T Consensus 104 ---~~~~~~~~~----~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDY----IKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHH----HHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHH----hcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 111222222 2222 3899999954 223321 211 110011235578888873
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.25 E-value=0.00011 Score=66.55 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=34.0
Q ss_pred cccchhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999888888887653 334557899999999999999887754
No 225
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.12 E-value=0.0024 Score=68.76 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=82.9
Q ss_pred CCCCC-ceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEeecCCCCcccchh-hcC
Q 041248 536 VPTCP-HLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDISHAGIRELPEE-LKL 612 (813)
Q Consensus 536 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~~-~~~ 612 (813)
+..++ .|+++.+. ..+..++..+|.++.+|+.+.+..+..-.++.++ ..+.++..|+.+.+..+ ++.++.. +..
T Consensus 59 F~~~~~~L~sI~iP--~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIP--DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEEC--TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred ccCCCCcCEEEEEC--CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 56664 59999996 3488899999999999999999876211355553 45777888998887654 6666544 678
Q ss_pred CCCCcEEeccCcccccccchhhhcCCCCCceeeccc
Q 041248 613 LVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFA 648 (813)
Q Consensus 613 l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 648 (813)
+.+|+.+.+..+ +..++...+..+.+|+.+.+..
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred hcccccccccce--eeeecccceecccccccccccc
Confidence 999999999764 5778877789999999988864
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.05 E-value=0.0013 Score=68.17 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=37.5
Q ss_pred cccchhHHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 5789999988888877642 23589999999999999999999876
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.04 E-value=8.5e-05 Score=67.74 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....++|+|..|+|||||++.+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999977
No 228
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.96 E-value=0.0036 Score=68.66 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=36.1
Q ss_pred CcccchhHHHHHHHHHH---hcC--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCL---VEE--SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+..++ ..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899998877655544 333 23578899999999999999999876
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.96 E-value=0.0018 Score=74.86 Aligned_cols=172 Identities=17% Similarity=0.197 Sum_probs=97.7
Q ss_pred cccchhHHHHHHHHHHh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 159 TIVGLQSQLEQVWRCLV----E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
++.|-++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ..+ .+.++.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH------
Confidence 46788888877777653 1 245679999999999999999999976 222 2333321
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--------c-----ccccccCCCC-CCCCCc
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--------D-----LTKMGIPLSG-PKNTTS 291 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~l~~-~~~~~s 291 (813)
++... +.......+...+.......+.+|++|+++... + ...+...+.. ....+.
T Consensus 273 ----~l~sk-------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 273 ----EIMSK-------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ----HHHSS-------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred ----Hhhcc-------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11110 112222223333344446789999999996421 0 0111111100 111233
Q ss_pred EEEEEcCccc-ccccC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcch
Q 041248 292 KVVFTTRFVD-VCGSM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPL 357 (813)
Q Consensus 292 ~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 357 (813)
.||.||.... +-..+ .-...+++...+.++-.++|..+........+.+ ...|++++.|.--
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 4455555433 22111 2345789999999999999988775543233333 4567888888653
No 230
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.71 E-value=0.0059 Score=71.77 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=93.0
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
..++|.+..++++.+++.. .....|.|+|++|+||||||+.+++.. ...| +.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 3578999888888887642 234679999999999999999998875 2222 3333211
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCccc-------------ccccccCCCC-CCCCC
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERVD-------------LTKMGIPLSG-PKNTT 290 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~-~~~~~ 290 (813)
+. + . ............+.......+.++++|++..... ...+...+.. ....+
T Consensus 274 ------l~---~-~---~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 274 ------IM---S-K---LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ------HS---S-S---STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ------hh---h-h---hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 10 0 0 0111112222333334445788999999953210 0111111100 11223
Q ss_pred cEEEEEcCccc-ccccC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 291 SKVVFTTRFVD-VCGSM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 291 s~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
..+|.||.... +.... .....+.+...+.++-.+++...+.......+.. ..+++..+.|..
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 45555665432 21111 1234577888899999999987765433222222 234555566554
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.68 E-value=0.0091 Score=66.84 Aligned_cols=45 Identities=31% Similarity=0.378 Sum_probs=34.7
Q ss_pred cccchhHHHHHHHHHHh------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLV------EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|-+.....+.+.+. ......+.++|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46887777766655432 1245689999999999999999999876
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.65 E-value=0.026 Score=57.03 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=80.6
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
.++.|-++.+++|.+.+.. .-.+-+.++|++|+||||||+.++... .. ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 4567888888877765421 112239999999999999999999876 11 2344432211100
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCccc---------c----cccccCCCC-CCCC
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWERVD---------L----TKMGIPLSG-PKNT 289 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~---------~----~~~~~~l~~-~~~~ 289 (813)
........+..+.+.. ...+.++++|+++.... . ..+...+.. ....
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0001111222233222 34678999999964210 0 001111100 1112
Q ss_pred CcEEEEEcCccccccc-----CCCCcceEcCCCCHHHHHHHHHHhhC
Q 041248 290 TSKVVFTTRFVDVCGS-----MEADKKFQVACLSEEDAWELFRKKVG 331 (813)
Q Consensus 290 ~s~ilvTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~ 331 (813)
..-++.+|....+... -.-...+.++..+.++-.+++.....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3344556665554321 13356788999999999999987764
No 233
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.63 E-value=0.021 Score=62.72 Aligned_cols=168 Identities=19% Similarity=0.211 Sum_probs=90.2
Q ss_pred CcccchhHHHHHHHHHHh---cC---------CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLV---EE---------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
.+++|.+..+.++.+... .. -.+-|.|+|++|+|||+||+.+++.. ... .+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCC---EEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEehhHHHH--
Confidence 468999887777665542 21 12348999999999999999999876 222 23333221100
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhc----CCcEEEEEecccCcc------------c----ccccccCCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLR----EKRFVLLLDDIWERV------------D----LTKMGIPLSG 285 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~------------~----~~~~~~~l~~ 285 (813)
.........+...++ ..+.++++|+++... . +..+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 000111122333332 245799999995321 0 1111111100
Q ss_pred -CCCCCcEEEEEcCcccccc-cC----CCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 286 -PKNTTSKVVFTTRFVDVCG-SM----EADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 286 -~~~~~s~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
.......|+.||....... .. .....+.++..+.++-.+++..++.......+.. ...|+..+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1122344555666554422 11 2345788999999988888887764322222221 345777777765
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.63 E-value=0.001 Score=78.38 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=37.6
Q ss_pred CcccchhHHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+.+.+... ....+.++|++|+|||++|+.+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999998888877531 22379999999999999999998875
No 235
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.54 E-value=0.013 Score=58.52 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=86.9
Q ss_pred CcccchhHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
..++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.+++.. ... .+.+.. .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~~---~i~~~~------~ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASG------S 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TCC---EEEEEH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCC---EEEeeH------H
Confidence 457888776666554332 1 112238999999999999999999876 211 222321 1
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCcc------------c----ccccccCCCCCC-
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWERV------------D----LTKMGIPLSGPK- 287 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~- 287 (813)
. +.... .. .....+..+.+.. ...+.++++|++.... . ...+...+....
T Consensus 84 ~----~~~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 D----FVEMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp H----HHHSC-------TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred H----HHHHH-------hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 1 11100 00 1112222233332 3457899999994210 0 111111110111
Q ss_pred CCCcEEEEEcCcccccc-----cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 288 NTTSKVVFTTRFVDVCG-----SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
.....++.||....+.. .......+.++..+.++-.+++...+.......+.. ...+++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 12233444665554421 112345788898998888888877664332122222 335666676643
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.51 E-value=0.013 Score=59.56 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=87.7
Q ss_pred CcccchhHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHH
Q 041248 158 PTIVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLE 225 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 225 (813)
..++|.+..++++.+... . .-.+-+.|+|++|+||||||+.+++.. .. ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---CC---CEEEecHH------
Confidence 467898877666655432 1 112238999999999999999999876 21 12333211
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-cCCcEEEEEecccCcc------------c----ccccccCCCCCCC
Q 041248 226 KIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSL-REKRFVLLLDDIWERV------------D----LTKMGIPLSGPKN 288 (813)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~ 288 (813)
.+ .... .. .....+..+.+.. ...+.++++|++.... . ...+...+ ..+.
T Consensus 108 ~~----~~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l-sgg~ 174 (278)
T 1iy2_A 108 DF----VEMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM-DGFE 174 (278)
T ss_dssp HH----HHST-------TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHH-TTCC
T ss_pred HH----HHHH-------hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHH-hCCC
Confidence 11 1100 00 0111222222222 3457899999994210 0 11111112 1111
Q ss_pred --CCcEEEEEcCcccccc-----cCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcc
Q 041248 289 --TTSKVVFTTRFVDVCG-----SMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLP 356 (813)
Q Consensus 289 --~~s~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (813)
....++.||....+.. .......+.++..+.++-.+++...+.......+.. ...++..+.|..
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 1233444555544421 112345788998999888888887664332222221 335666776654
No 237
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.44 E-value=0.0082 Score=58.45 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCC----------CccCCCCH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVD----------DSWKSKSV 247 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~ 247 (813)
...++.|+|.+|+|||||+..++. . . -..++|++.....+...+.. +.+..+... ........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 456999999999999999999987 2 1 13678887766555554433 333333210 00011122
Q ss_pred HHHHHHHHHHhcCCcEEEEEeccc
Q 041248 248 EEKALDIFRSLREKRFVLLLDDIW 271 (813)
Q Consensus 248 ~~~~~~l~~~l~~k~~LlVlDdv~ 271 (813)
.+....++..+..++-++|+|.+.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcH
Confidence 334444555554457789999874
No 238
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.39 E-value=0.02 Score=61.00 Aligned_cols=84 Identities=23% Similarity=0.207 Sum_probs=40.9
Q ss_pred chhhcCCCcccEEEeccCCccccccc-CccccCCCCCCEEeecCCCCcccch-hhcCCCCCcEEeccCcccccccchhhh
Q 041248 558 DGFFQCMPSLKVLKMSNCGHVKVLKL-PFGMSKLGSLQLLDISHAGIRELPE-ELKLLVNLKCLNLRWTRMLNKIPRLLI 635 (813)
Q Consensus 558 ~~~~~~l~~L~~L~l~~~~~~~~~~l-p~~i~~L~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i 635 (813)
...|....+|+.+.+..+ +..+ ...+.++..|+.+.+..+ ++.++. .+.++.+|+.+.+..+ +..++...+
T Consensus 210 ~~~f~~~~~l~~i~~~~~----~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF 282 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG----VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLC 282 (379)
T ss_dssp TTTTTTCSSCSEEECCTT----CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTT
T ss_pred ecccccccccceeeeccc----eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccc
Confidence 333445555555555433 2222 223445555555555543 444432 2445555666555432 445555555
Q ss_pred cCCCCCceeeccc
Q 041248 636 SNSSWLRVLRMFA 648 (813)
Q Consensus 636 ~~L~~L~~L~l~~ 648 (813)
..+++|+.+.+..
T Consensus 283 ~~c~~L~~i~l~~ 295 (379)
T 4h09_A 283 SGCSNLTKVVMDN 295 (379)
T ss_dssp TTCTTCCEEEECC
T ss_pred ccccccccccccc
Confidence 5566666555543
No 239
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.37 E-value=0.0075 Score=63.03 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS---WKSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (813)
...++.|+|++|+||||||.+++..... .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 4579999999999999999999887621 12347788776665543 45566654322 1234556666655
Q ss_pred HHHhc-CCcEEEEEeccc
Q 041248 255 FRSLR-EKRFVLLLDDIW 271 (813)
Q Consensus 255 ~~~l~-~k~~LlVlDdv~ 271 (813)
...++ .+.-++|+|.+.
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 55554 455688999984
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.36 E-value=0.0032 Score=64.11 Aligned_cols=68 Identities=22% Similarity=0.337 Sum_probs=44.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe--cCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVV--SKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
.+++.|+|++|+|||+||.+++... .. .++|++. .+. +.. ...+.++....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhh-------------hhh-----hhcCHHHHHHHHHH
Confidence 4577899999999999999998752 11 2345555 222 110 01345666666777
Q ss_pred HhcCCcEEEEEeccc
Q 041248 257 SLREKRFVLLLDDIW 271 (813)
Q Consensus 257 ~l~~k~~LlVlDdv~ 271 (813)
.+...+ ++|+|++.
T Consensus 179 ~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLK 192 (331)
T ss_dssp HHHHCS-EEEEECCT
T ss_pred HHhhCC-EEEEeccc
Confidence 776666 99999984
No 241
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.27 E-value=0.012 Score=58.19 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEecCccCHHHHHHHHHHHcCCCCC----c---cCCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----SFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDD----S---WKSKS 246 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 246 (813)
...++.|+|++|+|||||+..++.... ... .-..++|+.....+....+ .++++.++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQ-LPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHh-CchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCC
Confidence 457999999999999999999988631 111 2357888887665444443 334455554320 0 01122
Q ss_pred HHH---HHHHHHHHhc-CCcEEEEEeccc
Q 041248 247 VEE---KALDIFRSLR-EKRFVLLLDDIW 271 (813)
Q Consensus 247 ~~~---~~~~l~~~l~-~k~~LlVlDdv~ 271 (813)
..+ ....+.+.+. .+.-++|+|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 222 2233444443 467788888874
No 242
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.21 E-value=0.015 Score=58.92 Aligned_cols=87 Identities=11% Similarity=0.147 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCcc---CCCCHHHH-HHHHH
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSW---KSKSVEEK-ALDIF 255 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 255 (813)
.++-|+|.+|+||||||.+++....+ ...-..++|++....++.. .++.++...+.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 47899999999999999998877621 1113468899887777653 367777654321 23455555 33332
Q ss_pred HH--h-cCCcEEEEEecccC
Q 041248 256 RS--L-REKRFVLLLDDIWE 272 (813)
Q Consensus 256 ~~--l-~~k~~LlVlDdv~~ 272 (813)
.. + .++.-++|+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 3 45788999999843
No 243
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.04 E-value=0.029 Score=58.78 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEecCccCHHHHHHHHHHHcCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----SFDCVIWAVVSKDLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (813)
...++.|+|.+|+||||||.+++.... ... .-..++|++....++...+. ++++.++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~-~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQ-LPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTT-SCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh-cccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 457999999999999999999988641 111 23478899888777766654 34455554
No 244
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.03 E-value=0.02 Score=59.54 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc-------cCCCCH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESP---TSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS-------WKSKSV 247 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 247 (813)
...++.|+|.+|+||||||.+++....... ..-..++|++....++..++. ++++.++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 456999999999999999999987651110 013478999888777666654 345566543210 011222
Q ss_pred H---HHHHHHHHHhc--CCcEEEEEeccc
Q 041248 248 E---EKALDIFRSLR--EKRFVLLLDDIW 271 (813)
Q Consensus 248 ~---~~~~~l~~~l~--~k~~LlVlDdv~ 271 (813)
+ +....+...++ .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 23344444443 456678888763
No 245
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.86 E-value=0.018 Score=60.24 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS---WKSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (813)
...++.|+|.+|+||||||.+++..... .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4579999999999999999999876521 22457888887666543 25556644321 1223455555555
Q ss_pred HHHhc-CCcEEEEEeccc
Q 041248 255 FRSLR-EKRFVLLLDDIW 271 (813)
Q Consensus 255 ~~~l~-~k~~LlVlDdv~ 271 (813)
....+ .+.-++|+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 54443 356689999984
No 246
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.83 E-value=0.0078 Score=62.05 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 163 LQSQLEQVWRCLVEE---SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 163 r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+...++.+.+++... ....+.|+|++|+|||+||+.+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334445555666542 24788999999999999999999876
No 247
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.72 E-value=0.026 Score=60.18 Aligned_cols=104 Identities=18% Similarity=0.143 Sum_probs=57.0
Q ss_pred CCCCCceeEEEeeeccccccccchhhcCCCcccEEEeccCCcccccccC-ccccCCCCCCEEeecCCCCcccchh-hcCC
Q 041248 536 VPTCPHLLTLFLDFNYKLEMITDGFFQCMPSLKVLKMSNCGHVKVLKLP-FGMSKLGSLQLLDISHAGIRELPEE-LKLL 613 (813)
Q Consensus 536 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~lp-~~i~~L~~L~~L~l~~~~i~~lp~~-~~~l 613 (813)
+..+..|+.+.+.. .+..++..+|.++..|+.+.+..+ +..++ ..+.++.+|+.+.+..+.++.++.. +.++
T Consensus 236 f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~----i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 236 FYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK----VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp TTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC----CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred ccCCccceEEEcCC--CccEeCccccceeehhcccccccc----ceeccccccccccccccccccccccceehhhhhcCC
Confidence 34555566655542 244555555666666666665432 33333 2455566666666666556655433 5566
Q ss_pred CCCcEEeccCcccccccchhhhcCCCCCceeecc
Q 041248 614 VNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMF 647 (813)
Q Consensus 614 ~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 647 (813)
.+|+.+.|..+ ++.++...+.++++|+.+.+.
T Consensus 310 ~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 310 VKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 66666666433 455555556666666665553
No 248
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.71 E-value=0.0072 Score=61.92 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999987
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.69 E-value=0.0041 Score=60.42 Aligned_cols=114 Identities=16% Similarity=-0.072 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRS 257 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (813)
...++.|+|..|+||||++..+.++.. ..-..++.+....... ....++..++...+........+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 457889999999999999998888762 2222344444333221 1224455555433322222334444444444
Q ss_pred hcCC-cEEEEEecccCc--ccccccccCCCCCCCCCcEEEEEcCccc
Q 041248 258 LREK-RFVLLLDDIWER--VDLTKMGIPLSGPKNTTSKVVFTTRFVD 301 (813)
Q Consensus 258 l~~k-~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ilvTtR~~~ 301 (813)
+.+. .-+||+|.+... ...+.+ ..+ .+ .+..||+|-+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l-~~L-~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVA-NIL-AE--NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHH-HHH-HH--TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHH-HHH-Hh--CCCeEEEEecccc
Confidence 4444 449999998532 222222 112 11 2678898888544
No 250
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.67 E-value=0.0061 Score=57.36 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=59.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC---ccCHHHHHHHHHHHcCCC----CCcc--CCCC---
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK---DLRLEKIQEDIGKKIGLV----DDSW--KSKS--- 246 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~----~~~~--~~~~--- 246 (813)
...|.|++..|.||||.|-...-+.. .+--.+.++.... ......++.. +++. ...+ ...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHH
Confidence 45677777777999999988777652 2222455554433 2233333333 3210 0011 1111
Q ss_pred ----HHHHHHHHHHHhcCC-cEEEEEecccC-----cccccccccCCCCCCCCCcEEEEEcCcc
Q 041248 247 ----VEEKALDIFRSLREK-RFVLLLDDIWE-----RVDLTKMGIPLSGPKNTTSKVVFTTRFV 300 (813)
Q Consensus 247 ----~~~~~~~l~~~l~~k-~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~s~ilvTtR~~ 300 (813)
........++.+.+. -=|||||++-. ..+.+++...+ ........||+|+|..
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l-~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISAL-NARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHH-HTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHH-HhCcCCCEEEEECCCC
Confidence 112223344555444 45999999832 22223332223 3334567899999975
No 251
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.66 E-value=0.013 Score=56.30 Aligned_cols=42 Identities=19% Similarity=0.456 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 162 GLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 162 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|++.++.+.+.+.. ....+|+|.|..|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677788887764 346799999999999999999998765
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.65 E-value=0.017 Score=67.91 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=37.2
Q ss_pred CcccchhHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999988888877652 123479999999999999999998876
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.60 E-value=0.027 Score=59.24 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS---WKSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (813)
...++.|+|.+|+||||||.+++..... .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 4568999999999999999998877521 22368899887766543 24555543221 1234556666666
Q ss_pred HHHhc-CCcEEEEEeccc
Q 041248 255 FRSLR-EKRFVLLLDDIW 271 (813)
Q Consensus 255 ~~~l~-~k~~LlVlDdv~ 271 (813)
....+ +..-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 65554 345689999984
No 254
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.59 E-value=0.025 Score=59.24 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCcc---CCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSW---KSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (813)
...++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4579999999999999999998877521 12358888887766543 245555433211 123445544444
Q ss_pred HHHh-cCCcEEEEEeccc
Q 041248 255 FRSL-REKRFVLLLDDIW 271 (813)
Q Consensus 255 ~~~l-~~k~~LlVlDdv~ 271 (813)
.... ..+.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 4443 2455688999873
No 255
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.51 E-value=0.014 Score=58.72 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=34.6
Q ss_pred CcccchhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3578999888888776643 334578899999999999999999875
No 256
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.44 E-value=0.02 Score=50.33 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=15.2
Q ss_pred CCCEEeecCCCCcccchh-hcCCCCCcEEeccCc
Q 041248 592 SLQLLDISHAGIRELPEE-LKLLVNLKCLNLRWT 624 (813)
Q Consensus 592 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 624 (813)
+|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444444444444433 334444444444444
No 257
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.41 E-value=0.036 Score=57.58 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC-----------CCCC--CEEEEEEecCccCHHHHHHHHHHHcCCCCCc---
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES-----------PTSF--DCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS--- 241 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-----------~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 241 (813)
...++.|+|.+|+|||+||.+++...... .... ..++|++....++..++.. +++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 45799999999999999999988753110 0111 4788998887776666653 44556543210
Q ss_pred ----cCCCCHH---HHHHHHHHHhcC--CcEEEEEecc
Q 041248 242 ----WKSKSVE---EKALDIFRSLRE--KRFVLLLDDI 270 (813)
Q Consensus 242 ----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv 270 (813)
....+.+ +....+...++. +.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 233344444443 4557788876
No 258
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.41 E-value=0.017 Score=50.80 Aligned_cols=56 Identities=25% Similarity=0.311 Sum_probs=46.0
Q ss_pred CEEeecCCCCc--ccchhhcCCCCCcEEeccCcccccccchhhhcCCCCCceeeccccccC
Q 041248 594 QLLDISHAGIR--ELPEELKLLVNLKCLNLRWTRMLNKIPRLLISNSSWLRVLRMFAIGFE 652 (813)
Q Consensus 594 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 652 (813)
..++.++++++ .+|..+. .+|++|+|++| .+..+|.+.+..+++|++|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 36777777887 8886543 57999999999 689999988899999999999987664
No 259
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.40 E-value=0.02 Score=68.16 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=36.9
Q ss_pred cccchhHHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999888888777531 23589999999999999999998876
No 260
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.35 E-value=0.011 Score=61.51 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=34.7
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc
Q 041248 169 QVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL 222 (813)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 222 (813)
++++.+.. ..-..++|+|..|+|||||++.+.+........+.++ ++-+++..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence 34454443 3456899999999999999999877652212344443 56676553
No 261
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.28 E-value=0.019 Score=58.98 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=37.7
Q ss_pred CcccchhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3578999999888887754 344568899999999999999998865
No 262
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.25 E-value=0.073 Score=55.76 Aligned_cols=162 Identities=12% Similarity=-0.062 Sum_probs=94.6
Q ss_pred HHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCccCCCCHHHH
Q 041248 171 WRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSWKSKSVEEK 250 (813)
Q Consensus 171 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 250 (813)
.+.+.+.-.++..++|..|.||++.++.+.+... ...|+....+.+....++.+ .
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-----------------------l 64 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNA-----------------------I 64 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHH-----------------------H
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHH-----------------------H
Confidence 3344434567899999999999999999887651 12343222222222233332 2
Q ss_pred HHHHHH-HhcCCcEEEEEecccC---cccccccccCCCCCCCCCcEEEEEcCc-------cccccc-CCCCcceEcCCCC
Q 041248 251 ALDIFR-SLREKRFVLLLDDIWE---RVDLTKMGIPLSGPKNTTSKVVFTTRF-------VDVCGS-MEADKKFQVACLS 318 (813)
Q Consensus 251 ~~~l~~-~l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~~s~ilvTtR~-------~~v~~~-~~~~~~~~l~~L~ 318 (813)
...+.. -+-+++-++|+|++.. ...+..+...+ .....++.+|++|.. ..+... ......++..+++
T Consensus 65 ~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~l-e~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 65 FSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLT-GLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp HHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHH-TTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred HHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHH-hcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 222221 1345667888999865 23344444334 223346666665532 122222 2345678999999
Q ss_pred HHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCcchHHHH
Q 041248 319 EEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGLPLALIT 361 (813)
Q Consensus 319 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (813)
.++....+.+.+......-+ .+.+..+++.++|.+..+..
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 99999888877643321122 35688899999998877654
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.21 E-value=0.056 Score=55.10 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC-ccCHHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK-DLRLEKIQEDIGKKIGLVDDSWKSKSVEEKALDIFR 256 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (813)
...+|+++|.+|+||||++..++.... .... ..+..+.... .....+.+....+..++... ...+..+....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~-~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM-LEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH-HTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 357999999999999999999987762 1111 2344554432 12233334444444444321 1223333333333
Q ss_pred HhcCCcEEEEEecc
Q 041248 257 SLREKRFVLLLDDI 270 (813)
Q Consensus 257 ~l~~k~~LlVlDdv 270 (813)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 33 33457788843
No 264
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.12 E-value=0.043 Score=53.74 Aligned_cols=48 Identities=27% Similarity=0.250 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQED 230 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (813)
...+++|+|.+|+|||||++.++..... .-..++|+.... ....+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHH
Confidence 3468999999999999999999866521 112456665433 34444433
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.05 E-value=0.018 Score=55.47 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=29.7
Q ss_pred HHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 166 QLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 166 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
-+++|.+.+.. ....+|+|+|+.|+|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555543 356799999999999999999998876
No 266
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.98 E-value=0.093 Score=51.18 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEecCccCHHHHHHHHHHHcC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES---PTSFDCVIWAVVSKDLRLEKIQEDIGKKIG 236 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (813)
.-.+++|+|+.|+|||||++.++...... ......++|+.......... ...+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 45799999999999999999998754110 01234577877554433332 333444444
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.96 E-value=0.092 Score=55.84 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=39.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEecCccCHHHHHHHHHHHcCCC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES---PTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLV 238 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 238 (813)
.-.++.|+|.+|+|||||+..++-..... ...-..++|++....+....+ ..+++.+++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~ 239 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLD 239 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCC
Confidence 45799999999999999999876433110 112356888887665555443 3466666653
No 268
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.93 E-value=0.027 Score=54.99 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 164 QSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 164 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++..+.+.+.+.......|+|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4445555565555677899999999999999999998875
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.91 E-value=0.075 Score=55.67 Aligned_cols=93 Identities=23% Similarity=0.328 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CCEEEEEEecCccCHHHHHHHHHHHcCCCCCc----------cC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTS----FDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS----------WK 243 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------~~ 243 (813)
...++.|+|..|+|||||+..++.... .... -..++|++....+....+ ..+++..+..... ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~-~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQ-LPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT-SCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc-cchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 457999999999999999999988651 1111 135588887655433333 3345544432110 00
Q ss_pred CCCHHHHHHHHHHHhc------CCcEEEEEecccC
Q 041248 244 SKSVEEKALDIFRSLR------EKRFVLLLDDIWE 272 (813)
Q Consensus 244 ~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~ 272 (813)
.....+....+...+. .++-++|+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1112233344444443 4677899998743
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.81 E-value=0.017 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 271
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.78 E-value=0.019 Score=60.01 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=37.6
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.++|++..++.+...+..+ .-+.++|++|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46799999998888887654 468899999999999999998876
No 272
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.68 E-value=0.018 Score=53.53 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|+|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.62 E-value=0.018 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 57999999999999999999 543
No 274
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.54 E-value=0.029 Score=61.60 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=37.5
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.++|++..++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 35799999998888877654 478899999999999999998876
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.52 E-value=0.078 Score=54.19 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH--HHHHHHHHHHcCCCCCc-cCCCCHHHH-HHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL--EKIQEDIGKKIGLVDDS-WKSKSVEEK-ALD 253 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 253 (813)
...+|+|+|.+|+||||++..++.... . .-..+.++.... +.. .+.+...++..++..-. ....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~-~--~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV-D--EGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-H--TTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH-h--cCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 457999999999999999999988762 1 112345555432 222 12233445555432210 112233322 233
Q ss_pred HHHHhcCCcEEEEEeccc
Q 041248 254 IFRSLREKRFVLLLDDIW 271 (813)
Q Consensus 254 l~~~l~~k~~LlVlDdv~ 271 (813)
+...+..+.-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444455555578888663
No 276
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.49 E-value=0.031 Score=54.36 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=33.3
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 161 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
-+.+...+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344555666666655677899999999999999999998875
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.44 E-value=0.023 Score=53.77 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|+.|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34789999999999999999998753
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.44 E-value=0.022 Score=54.44 Aligned_cols=26 Identities=38% Similarity=0.353 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|+.|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 279
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.41 E-value=0.29 Score=52.47 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=45.3
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHH
Q 041248 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKK 234 (813)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 234 (813)
.++.+.. .+-..++|.|..|+|||+|+..+.+... +.+-+.++++-+.+.. ...++.+++.+.
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4555543 3456889999999999999999988752 3345677788887764 456677777654
No 280
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.37 E-value=0.12 Score=53.19 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
...++.|.|.+|+||||||.+++.... ... ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 457999999999999999999987762 222 567777654 4566666666654
No 281
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.34 E-value=0.21 Score=53.57 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36899999999999999999998876
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.33 E-value=0.025 Score=52.91 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041248 180 GIIGLYGMGGVGKTTLLTHINN 201 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~ 201 (813)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 283
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.30 E-value=0.042 Score=63.66 Aligned_cols=171 Identities=16% Similarity=0.212 Sum_probs=77.9
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
..+.|.++.+++|.+.+.- ...+-|.++|++|+|||.+|+++++.. ... ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec----c
Confidence 3567788888777765531 124557899999999999999999986 222 22222 1
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhcCCcEEEEEecccCcc--------c--------ccccccCCCC-CC
Q 041248 225 EKIQEDIGKKIGLVDDSWKSKSVEEKALDIFRSLREKRFVLLLDDIWERV--------D--------LTKMGIPLSG-PK 287 (813)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--------~~~~~~~l~~-~~ 287 (813)
.+ ++.. +.+.+.......+...-+..+.+|++|+++... + ...+...+.. ..
T Consensus 545 ~~----l~s~-------~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 PE----LLTM-------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HH----HHTT-------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred ch----hhcc-------ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 11 1111 122333333333333345679999999996421 0 1111111101 11
Q ss_pred CCCcEEEEEcCcccc-----cccCCCCcceEcCCCCHHHHHHHHHHhhCCCccCCChhHHHHHHHHHHHhCCc
Q 041248 288 NTTSKVVFTTRFVDV-----CGSMEADKKFQVACLSEEDAWELFRKKVGEETLESDHDIVELAQTVAKECGGL 355 (813)
Q Consensus 288 ~~~s~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (813)
..+.-||-||..... .+.-.-...+.++.-+.++-.++|+.+........+.+ ...|++.+.|.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 122233334443332 11112356777777677777777776664433222222 34566666664
No 284
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.28 E-value=0.095 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|.|.|++|+||+|.|+.+..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999887
No 285
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.26 E-value=0.021 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 286
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.25 E-value=0.028 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998865
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.23 E-value=0.032 Score=53.39 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+|+|+|+.|+||||+++.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 288
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.18 E-value=0.027 Score=58.02 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK 220 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 220 (813)
++.+||+|+|-|||||||.+..+..-.++. . ..+.-+.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~--G-kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--G-KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT--T-CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC--C-CeEEEEecCC
Confidence 467999999999999999999887776321 1 2355566553
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.17 E-value=0.027 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 290
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.17 E-value=0.041 Score=58.21 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=36.5
Q ss_pred cccchhHHHHHHHHHHh-------------c--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 159 TIVGLQSQLEQVWRCLV-------------E--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 159 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899988888887772 1 134678999999999999999999876
No 291
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.15 E-value=0.16 Score=54.68 Aligned_cols=52 Identities=25% Similarity=0.412 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHH
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGK 233 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 233 (813)
..++|+|..|+|||||++.+..... ....+..+++.+++.. ...+++.++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 4689999999999999999887752 1122345666676654 34455555543
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.05 E-value=0.029 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999876
No 293
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.04 E-value=0.15 Score=52.67 Aligned_cols=58 Identities=28% Similarity=0.380 Sum_probs=35.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC-ccCHHHHHHHHHHHcCC
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK-DLRLEKIQEDIGKKIGL 237 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 237 (813)
....+++|+|+.|+||||+++.++.... . ... .+.++.... .....+.+....+.+++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-~-~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-N-HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-H-TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-h-cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 3568999999999999999999988762 1 222 344444322 12233444555555553
No 294
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.03 E-value=0.031 Score=52.73 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 295
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.00 E-value=0.048 Score=58.00 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=35.6
Q ss_pred CcccchhHHHHHHHHHHh------------------------------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLV------------------------------EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.|...+. ......+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 356888888887776662 0123568899999999999999999876
No 296
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.00 E-value=0.023 Score=59.81 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=34.7
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+..........-|.|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3589998866655444433333458999999999999999999876
No 297
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.98 E-value=0.062 Score=55.56 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=31.7
Q ss_pred cchhHHHHHHHHHHh----cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 161 VGLQSQLEQVWRCLV----EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 161 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
|+-+.-.+++++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344555566666553 3456679999999999999999988765
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.98 E-value=0.033 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 299
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.95 E-value=0.057 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+|+|.|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999987766
No 300
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.95 E-value=0.24 Score=53.02 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999998776
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.86 E-value=0.027 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 302
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.85 E-value=0.15 Score=54.60 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|.|+|.+|+||||++..++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998877
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.84 E-value=0.029 Score=52.54 Aligned_cols=25 Identities=44% Similarity=0.430 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|.|.|++|+||||+++.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998876
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.81 E-value=0.035 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|+.|+||||+++.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998865
No 305
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.80 E-value=0.033 Score=52.67 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998876
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.77 E-value=0.038 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 307
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.76 E-value=0.2 Score=53.95 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc-cCHHHHHHHHHHHcCCCCCc-cCCCCHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD-LRLEKIQEDIGKKIGLVDDS-WKSKSVEEKALDIF 255 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 255 (813)
..++|.++|.+|+||||++..++.... ..... .+..++.... ....+.+.......++..-. ....+..+......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~-~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR-EKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH-HTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 467999999999999999999988772 22122 3444554332 22223333334444432110 01234444433333
Q ss_pred HHhc-CCcEEEEEecc
Q 041248 256 RSLR-EKRFVLLLDDI 270 (813)
Q Consensus 256 ~~l~-~k~~LlVlDdv 270 (813)
..++ ..-=++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 4443 22235666764
No 308
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.75 E-value=0.12 Score=51.02 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK 220 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 220 (813)
...++.|.|.+|+||||||.+++..... .-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 3468999999999999999888766521 123567776543
No 309
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.72 E-value=0.027 Score=52.95 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.|.|.|+.|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998875
No 310
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.68 E-value=0.04 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998875
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.67 E-value=0.037 Score=55.19 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 312
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.66 E-value=0.2 Score=53.96 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=62.2
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCC-------CC
Q 041248 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLV-------DD 240 (813)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~ 240 (813)
.++.|.. .+-..++|.|..|+|||+|+..+.+... +.+-+.++++-+++.. ...+++.++.+.-.+. ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 4455543 3456789999999999999999998752 3345778888887765 4567777776542221 00
Q ss_pred c----cCCCCHH------HHHHHHHHHh---cCCcEEEEEeccc
Q 041248 241 S----WKSKSVE------EKALDIFRSL---REKRFVLLLDDIW 271 (813)
Q Consensus 241 ~----~~~~~~~------~~~~~l~~~l---~~k~~LlVlDdv~ 271 (813)
. ....+.. ...-.+.+++ +++.+|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 0111111 1122233444 4689999999983
No 313
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.65 E-value=0.037 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 314
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.64 E-value=0.038 Score=51.62 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.64 E-value=0.034 Score=53.33 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998875
No 316
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.62 E-value=0.031 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.61 E-value=0.037 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.58 E-value=0.041 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.57 E-value=0.042 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999764
No 320
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.53 E-value=0.044 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
...|+|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.49 E-value=0.042 Score=52.14 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998876
No 322
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.47 E-value=0.046 Score=52.75 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.|.|++|+||||.|+.+..++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 323
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.44 E-value=0.047 Score=52.62 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 324
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.42 E-value=0.043 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999765
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.41 E-value=0.052 Score=51.93 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|.|+.|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998875
No 326
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.38 E-value=0.036 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 327
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.38 E-value=0.047 Score=52.37 Aligned_cols=25 Identities=36% Similarity=0.302 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 328
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.36 E-value=0.046 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998876
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.34 E-value=0.044 Score=52.52 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041248 180 GIIGLYGMGGVGKTTLLTHINN 201 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~ 201 (813)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.34 E-value=0.047 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|+|.|+.|+||||+|+.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 331
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.32 E-value=0.081 Score=54.33 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=30.6
Q ss_pred cchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 161 VGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 161 vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|....+..+...+.. ....+|+|.|..|+||||+++.+..-.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444445555444433 235599999999999999999987765
No 332
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.31 E-value=0.036 Score=52.10 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998876
No 333
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.29 E-value=0.17 Score=51.52 Aligned_cols=89 Identities=20% Similarity=0.096 Sum_probs=49.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCCc-cCCCCHHHHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDDS-WKSKSVEEKALDIFR 256 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 256 (813)
..+++++|.+|+||||++..++.... . .-..+.++...... .....+....+..++..-. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~-~--~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK-K--KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH-H--TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H--CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 57899999999999999999887762 1 12235555543322 2223334445555543211 012344555444444
Q ss_pred Hhc-CCcEEEEEecc
Q 041248 257 SLR-EKRFVLLLDDI 270 (813)
Q Consensus 257 ~l~-~k~~LlVlDdv 270 (813)
.++ ...=++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 443 33336777765
No 334
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.27 E-value=0.056 Score=51.65 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
....+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999774
No 335
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.25 E-value=0.054 Score=51.28 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.25 E-value=0.052 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|++|+||||+|+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 337
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.23 E-value=0.084 Score=53.60 Aligned_cols=26 Identities=35% Similarity=0.281 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.23 E-value=0.046 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|+|+|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998865
No 339
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.19 E-value=0.054 Score=52.01 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999997754
No 340
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.18 E-value=0.29 Score=53.05 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.18 E-value=0.049 Score=51.87 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 342
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.13 E-value=0.1 Score=51.59 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.....|+|.|++|+||||+|+.+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998865
No 343
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.11 E-value=0.069 Score=57.34 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=36.3
Q ss_pred CcccchhHHHHHHHHHHhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVE--------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|-+..++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578988888887766532 124568999999999999999999876
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.09 E-value=0.044 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 345
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.08 E-value=0.043 Score=52.36 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998765
No 346
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.08 E-value=0.048 Score=50.57 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHIN 200 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~ 200 (813)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34789999999999999999643
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.05 E-value=0.058 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.04 E-value=0.06 Score=53.61 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55789999999999999999998865
No 349
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.04 E-value=0.21 Score=50.82 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=47.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccC-HHHHHHHHHHHcCCCCCcc-CCCCHHHHHHHHHH
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLR-LEKIQEDIGKKIGLVDDSW-KSKSVEEKALDIFR 256 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 256 (813)
..+++|+|.+|+||||++..++.... . .-..+.++....... ....+....+..++..-.. ...+..++......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~-~--~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK-G--KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH-H--TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999988762 1 112345554432211 1122334445455432110 12344444333333
Q ss_pred Hh-cCCcEEEEEecc
Q 041248 257 SL-REKRFVLLLDDI 270 (813)
Q Consensus 257 ~l-~~k~~LlVlDdv 270 (813)
.+ ....=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 33 244457788876
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.03 E-value=0.054 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998876
No 351
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.03 E-value=0.14 Score=64.74 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCcc---CCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSW---KSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (813)
..+.|.|+|++|+|||+||.++..... ..-..++|+.+...++... ++.++...+.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 567999999999999999999988762 2233577787777665554 44555332211 122344555555
Q ss_pred HHHhc-CCcEEEEEeccc
Q 041248 255 FRSLR-EKRFVLLLDDIW 271 (813)
Q Consensus 255 ~~~l~-~k~~LlVlDdv~ 271 (813)
....+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 54443 567799999984
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.02 E-value=0.038 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998875
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.02 E-value=0.054 Score=51.99 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041248 180 GIIGLYGMGGVGKTTLLTHINN 201 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~ 201 (813)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999966
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.00 E-value=0.056 Score=51.64 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|.|.|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998876
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.95 E-value=0.06 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 356
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.92 E-value=0.082 Score=49.90 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=27.6
Q ss_pred HHHHHHHHhcC-CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 167 LEQVWRCLVEE-SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 167 ~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+..+..++..- ....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44455555431 23479999999999999999998876
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.88 E-value=0.057 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 358
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.84 E-value=0.54 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998776
No 359
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.78 E-value=0.063 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 360
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.77 E-value=0.065 Score=49.25 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++++|.|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 361
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.76 E-value=0.061 Score=51.70 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45799999999999999999998865
No 362
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.76 E-value=0.07 Score=48.66 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999998865
No 363
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.73 E-value=0.063 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 364
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.70 E-value=0.15 Score=52.55 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 365
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.67 E-value=0.066 Score=51.99 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998876
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.67 E-value=0.071 Score=50.42 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|.|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998864
No 367
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.67 E-value=0.072 Score=54.75 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+|+|.|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 346799999999999999999998866
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.62 E-value=0.068 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 369
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.62 E-value=0.087 Score=52.45 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|.|.|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 370
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.56 E-value=0.078 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999988754
No 371
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.45 E-value=0.059 Score=52.30 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998864
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.44 E-value=0.071 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999775
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.43 E-value=0.07 Score=51.62 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 374
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.43 E-value=0.3 Score=50.47 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKK 234 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (813)
...++.|.|.+|+||||||..++..... .-..++|++. ..+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 4568999999999999999999887632 2235666654 44566776666544
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.42 E-value=0.079 Score=50.63 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998865
No 376
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.36 E-value=0.075 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998865
No 377
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.26 E-value=0.057 Score=56.07 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=34.5
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc
Q 041248 169 QVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD 221 (813)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 221 (813)
++++.+.. ..-..++|+|.+|+|||+|++++.+........+.+ +++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 45566653 345688999999999999999988865211233333 45666654
No 378
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.25 E-value=0.044 Score=52.94 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|+|.|..|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 379
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.23 E-value=0.081 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.21 E-value=0.083 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999998876
No 381
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.19 E-value=0.08 Score=51.29 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998875
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.18 E-value=0.072 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.06 E-value=0.098 Score=48.80 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 384
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.97 E-value=0.15 Score=49.03 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 455799999999999999999998865
No 385
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.89 E-value=0.12 Score=53.00 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=29.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK 220 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 220 (813)
...++|+|+|-||+||||+|..++...++. -..++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL---GKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 467899999999999999999988877321 12456666554
No 386
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.86 E-value=0.078 Score=50.00 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988765
No 387
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.85 E-value=0.18 Score=52.96 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=28.7
Q ss_pred HHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 167 LEQVWRCLV--EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 167 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+.+.+. .....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444455554 3467899999999999999999988765
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.77 E-value=0.11 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINN 201 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~ 201 (813)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999866
No 389
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.59 E-value=0.13 Score=58.30 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=37.4
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 35799988888887777654 588999999999999999999876
No 390
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.59 E-value=0.1 Score=50.81 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 391
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.57 E-value=0.066 Score=49.51 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++++|+|..|+|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999988776
No 392
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.57 E-value=0.09 Score=51.99 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 393
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.50 E-value=0.2 Score=51.40 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+|+|.|..|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998865
No 394
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.50 E-value=0.097 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINN 201 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~ 201 (813)
...+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999999873
No 395
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.48 E-value=0.12 Score=47.80 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++++|.|..|+|||||+..+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998775
No 396
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.43 E-value=0.12 Score=52.82 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998876
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.41 E-value=0.11 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998876
No 398
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.40 E-value=0.12 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINN 201 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~ 201 (813)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 399
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.38 E-value=0.12 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 400
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.37 E-value=0.11 Score=51.07 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.. .+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 36 899999999999999999998754
No 401
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.31 E-value=0.11 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
++|+|.|+.|+||||+|+.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998876
No 402
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.30 E-value=0.11 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 403
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.27 E-value=0.28 Score=52.34 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=52.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCC-EEEEEEecCcc-CHHHHHHHHHHHcCCCC-----CccCCCCHHHH-
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESP-TSFD-CVIWAVVSKDL-RLEKIQEDIGKKIGLVD-----DSWKSKSVEEK- 250 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~-~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~- 250 (813)
..++|.|..|+|||+|+.++.+.. ... ++-+ .++++-+.+.. ...++.+++.+.-.+.. ...+.......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 457899999999999999998876 221 1112 56666666543 45666666554311100 00111111111
Q ss_pred ----HHHHHHHh---cCCcEEEEEeccc
Q 041248 251 ----ALDIFRSL---REKRFVLLLDDIW 271 (813)
Q Consensus 251 ----~~~l~~~l---~~k~~LlVlDdv~ 271 (813)
.-.+.+++ +++.+|+++||+-
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 12234444 3789999999984
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.24 E-value=0.11 Score=50.05 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.15 E-value=0.12 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|.|.|+.|+||||+|+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 406
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.07 E-value=0.14 Score=51.85 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998865
No 407
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.07 E-value=0.23 Score=52.94 Aligned_cols=92 Identities=13% Similarity=0.197 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCC--------CCCC-EEEEEEecCcc-CHHHHHHHHHHHcCCC-----CCccC
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESP--------TSFD-CVIWAVVSKDL-RLEKIQEDIGKKIGLV-----DDSWK 243 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-----~~~~~ 243 (813)
-..++|.|..|+|||+|+.++++.. ... ++-+ .++++-+.+.. ...++..++.+.-.+. ....+
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred CCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 3567899999999999999998876 221 1222 56666676543 4556666654421110 00011
Q ss_pred CCCHHHH-----HHHHHHHh---cCCcEEEEEeccc
Q 041248 244 SKSVEEK-----ALDIFRSL---REKRFVLLLDDIW 271 (813)
Q Consensus 244 ~~~~~~~-----~~~l~~~l---~~k~~LlVlDdv~ 271 (813)
....... .-.+.+++ +++.+|+++||+-
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 2222221 12234444 3789999999984
No 408
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.05 E-value=0.13 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|.|+|+.|+||||||+.++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 409
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.04 E-value=0.086 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-hhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHIN-NKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~-~~~ 203 (813)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 643
No 410
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.02 E-value=0.1 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 411
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.93 E-value=0.29 Score=50.66 Aligned_cols=46 Identities=26% Similarity=0.235 Sum_probs=32.7
Q ss_pred HhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCcc
Q 041248 174 LVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDL 222 (813)
Q Consensus 174 L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 222 (813)
+.+...+++.+.|.||+||||+|..++...+ ..-..++-+......
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAH 56 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSC
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCC
Confidence 3344567888999999999999999988873 222346666665443
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.92 E-value=0.14 Score=52.61 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998875
No 413
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.88 E-value=0.13 Score=50.35 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999987654
No 414
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.88 E-value=0.13 Score=48.49 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 415
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.86 E-value=0.14 Score=51.02 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999998776
No 416
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.75 E-value=0.25 Score=48.17 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....|+|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999987
No 417
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.69 E-value=0.42 Score=60.61 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCcc---CCCCHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDSW---KSKSVEEKALDI 254 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (813)
...++.|+|.+|+||||||.+++.... ..-..++|++.....+.. .++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 457999999999999999999988773 222367888877666543 256666543221 234566666666
Q ss_pred HHHh-cCCcEEEEEeccc
Q 041248 255 FRSL-REKRFVLLLDDIW 271 (813)
Q Consensus 255 ~~~l-~~k~~LlVlDdv~ 271 (813)
.... ..+.-++|+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 5544 3456699999984
No 418
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.61 E-value=0.26 Score=51.39 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=31.7
Q ss_pred HhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCc
Q 041248 174 LVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKD 221 (813)
Q Consensus 174 L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 221 (813)
+.....+++.+.|.||+||||+|..++...+.. ..-..+.-+.....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~ 59 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPA 59 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSS
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCC
Confidence 334566899999999999999999988776200 12224555665543
No 419
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.58 E-value=0.1 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
..+++|+|+.|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998764
No 420
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.51 E-value=0.18 Score=50.57 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44789999999999999999987654
No 421
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.45 E-value=0.16 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 422
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.45 E-value=0.16 Score=52.96 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999998876
No 423
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.45 E-value=0.14 Score=50.32 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987754
No 424
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.45 E-value=0.17 Score=45.87 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.|+|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 425
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.40 E-value=0.15 Score=50.62 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
.-.+++|+|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 426
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.38 E-value=0.92 Score=49.14 Aligned_cols=52 Identities=10% Similarity=-0.073 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
...++.|.|.+|+||||||.+++..... ..-..++|++.. .+..++...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHH
Confidence 4568999999999999999999887621 112346776553 455667666654
No 427
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.28 E-value=0.14 Score=51.09 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999987754
No 428
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.27 E-value=0.37 Score=60.29 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHHHH
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGKKIGLVDDS---WKSKSVEEKALDIFR 256 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~ 256 (813)
+++.|+|.+|+||||||.+++... ...-..++|++.....+... ++.++...+. ....+.++....+..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~---~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH---HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Q ss_pred Hh-cCCcEEEEEecc
Q 041248 257 SL-REKRFVLLLDDI 270 (813)
Q Consensus 257 ~l-~~k~~LlVlDdv 270 (813)
.. ..+.-++|+|-+
T Consensus 456 lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHhcCCCEEEECCH
No 429
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.26 E-value=0.15 Score=48.41 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|+|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998763
No 430
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.22 E-value=0.17 Score=48.24 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 165 SQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 165 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+.+.+.......-.|+|+|.+|+|||||+..+.+..
T Consensus 16 ~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 16 PRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp --------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 333444444444455678999999999999999988654
No 431
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.22 E-value=0.13 Score=50.58 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999987754
No 432
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.21 E-value=0.2 Score=49.41 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987764
No 433
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.21 E-value=0.19 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999998875
No 434
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.15 E-value=0.16 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999874
No 435
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.13 E-value=0.11 Score=49.91 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987754
No 436
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.11 E-value=3.3 Score=44.60 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=54.7
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCEEEEEEecCcc-CHHHHHHHHHHHcCCCCC-----c
Q 041248 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLL-THINNKFLESPTSFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVDD-----S 241 (813)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~ 241 (813)
.++.+.. .+-..++|.|..|+|||+|| ..+.+.. ..-..++++-+++.. .+.++.+.+.+.-.+... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 3444432 34457889999999999996 4565542 222245778887764 456666665543222110 0
Q ss_pred cCCCCHHHH-----HHHHHHHh--cCCcEEEEEeccc
Q 041248 242 WKSKSVEEK-----ALDIFRSL--REKRFVLLLDDIW 271 (813)
Q Consensus 242 ~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv~ 271 (813)
.+....... .-.+.+++ +++.+|+++||+-
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 011111111 11122333 5899999999984
No 437
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.09 E-value=0.14 Score=50.05 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 438
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.07 E-value=0.14 Score=51.31 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999997754
No 439
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.07 E-value=0.19 Score=50.03 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+++|+|+.|+|||||++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 456799999999999999999987755
No 440
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.06 E-value=0.18 Score=51.36 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 355799999999999999999988754
No 441
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.06 E-value=0.14 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999987754
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.05 E-value=0.17 Score=51.77 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999875
No 443
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.04 E-value=0.15 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45799999999999999999987754
No 444
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.03 E-value=0.15 Score=50.37 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999987654
No 445
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.99 E-value=0.16 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 446
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.98 E-value=0.24 Score=54.17 Aligned_cols=44 Identities=11% Similarity=-0.045 Sum_probs=32.9
Q ss_pred ccchhHHHHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 160 IVGLQSQLEQVWRCLV--EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 160 ~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+.|.+..+.+.+... .....+|.+.|+.|+||||+|+.+....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3455555555555542 2345789999999999999999999988
No 447
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.96 E-value=0.22 Score=49.99 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997754
No 448
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.89 E-value=0.13 Score=48.19 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 041248 181 IIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
No 449
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.81 E-value=0.23 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
-.|.+.|.||+||||+|..++...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 458889999999999999888876
No 450
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.79 E-value=0.32 Score=45.43 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 041248 168 EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 168 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
..+.+ +.......|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34455 33455678999999999999999999854
No 451
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.72 E-value=0.17 Score=50.27 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987754
No 452
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.61 E-value=0.16 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45699999999999999999997754
No 453
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.60 E-value=0.18 Score=45.96 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.--|+|+|.+|+|||||+..+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998754
No 454
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.60 E-value=0.16 Score=50.26 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987765
No 455
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.60 E-value=0.32 Score=48.73 Aligned_cols=38 Identities=18% Similarity=0.431 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecC
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSK 220 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 220 (813)
++|+|.|-||+||||+|..++...+ . .. ..++-+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~-~G-~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-A-MG-KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-T-TT-CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-H-CC-CcEEEEcCCC
Confidence 5788899999999999999988873 2 22 2455566543
No 456
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.57 E-value=0.21 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 457
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.56 E-value=0.52 Score=50.89 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCCcHHHHHH-HHHhhcccCCCCCC-EEEEEEecCcc-CHHHHHHHHHHHcCCCCC-----ccCC-----
Q 041248 178 SVGIIGLYGMGGVGKTTLLT-HINNKFLESPTSFD-CVIWAVVSKDL-RLEKIQEDIGKKIGLVDD-----SWKS----- 244 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~----- 244 (813)
.-..++|.|..|+|||+||. .+.+.. ..+ .++++-+++.. ...++.+.+.+.-.+... ..+.
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 34567899999999999965 666643 244 45677777654 345555555442111000 0011
Q ss_pred CCHH----HHHHHHHHHhcCCcEEEEEeccc
Q 041248 245 KSVE----EKALDIFRSLREKRFVLLLDDIW 271 (813)
Q Consensus 245 ~~~~----~~~~~l~~~l~~k~~LlVlDdv~ 271 (813)
.-.. ..+..++. +++.+|+++||+-
T Consensus 237 ~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 1111 12233333 5899999999984
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.52 E-value=0.18 Score=50.99 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...++.|+|.+|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999988754
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.52 E-value=0.18 Score=54.24 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999988765
No 460
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.47 E-value=0.19 Score=47.21 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+.|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998764
No 461
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.43 E-value=0.1 Score=58.84 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=32.3
Q ss_pred CcccchhHHHHHHHHHHhcCCce-----------EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 158 PTIVGLQSQLEQVWRCLVEESVG-----------IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+.++|.+..+..+.-.+..+..+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 35677776665554444433211 58899999999999999987764
No 462
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.42 E-value=0.23 Score=48.83 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|+|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999876
No 463
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.39 E-value=0.39 Score=52.40 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 166 QLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 166 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++.+...+.++. +.+.|.|.+|+||||++..+....
T Consensus 33 av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 33 AFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444444554433 489999999999999999988876
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.38 E-value=0.23 Score=48.75 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998865
No 465
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.36 E-value=0.17 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999987654
No 466
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.36 E-value=0.1 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
+..+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 467
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.31 E-value=0.17 Score=50.25 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999987754
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.30 E-value=0.22 Score=52.42 Aligned_cols=27 Identities=22% Similarity=0.050 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355799999999999999999998765
No 469
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.25 E-value=0.39 Score=47.51 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHHHHHhcC-C-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 168 EQVWRCLVEE-S-VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 168 ~~l~~~L~~~-~-~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+..++... . ...|.++|++|+|||.+|..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455666543 2 4579999999999999999999864
No 470
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.25 E-value=0.2 Score=47.00 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 471
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.25 E-value=0.17 Score=50.97 Aligned_cols=26 Identities=42% Similarity=0.491 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999987754
No 472
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.25 E-value=0.42 Score=51.26 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=56.8
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCC--CCCEEEEEEecCcc-CHHHHHHHHHHHcCCCC-----C
Q 041248 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPT--SFDCVIWAVVSKDL-RLEKIQEDIGKKIGLVD-----D 240 (813)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~--~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~ 240 (813)
.++.+.. ..-..++|.|..|+|||+|+.+++++. .... .-+.++++-+++.. ...++..++...-.+.. .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 3444432 234567788999999999999999886 2211 11456677676654 45666766665321110 0
Q ss_pred ccCCCCHHH-----HHHHHHHHh---cCCcEEEEEecc
Q 041248 241 SWKSKSVEE-----KALDIFRSL---REKRFVLLLDDI 270 (813)
Q Consensus 241 ~~~~~~~~~-----~~~~l~~~l---~~k~~LlVlDdv 270 (813)
..+...... ..-.+.+++ +++.+|+++||+
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 011111111 112233444 479999999998
No 473
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.15 E-value=0.21 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998865
No 474
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.08 E-value=0.45 Score=46.43 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...|.|.|+.|+||||+++.+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998887
No 475
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.06 E-value=0.25 Score=46.40 Aligned_cols=26 Identities=31% Similarity=0.255 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998764
No 476
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.05 E-value=0.5 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.|+|=|.-|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47888999999999999999887
No 477
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.03 E-value=0.21 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.-|+|+|.+|+|||||+..+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998754
No 478
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.99 E-value=0.21 Score=50.97 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+++|.|.+|+|||||++.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 479
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.92 E-value=0.19 Score=46.19 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.--|+|+|.+|+|||||+..+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987654
No 480
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.89 E-value=0.6 Score=49.85 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=27.0
Q ss_pred HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 169 QVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.+.+.+ .....+++|+|+.|+||||+++.+....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 344443 3556799999999999999999998876
No 481
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.87 E-value=1.2 Score=48.16 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=55.3
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHH-HHHhhcccCCCCCCE-EEEEEecCcc-CHHHHHHHHHHHcCCCCC-----
Q 041248 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLT-HINNKFLESPTSFDC-VIWAVVSKDL-RLEKIQEDIGKKIGLVDD----- 240 (813)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~----- 240 (813)
.++.+.. ..-..++|.|..|+|||+||. .+.+.. ..+. ++++-+++.. ...++.+.+.+.-.+...
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3444432 344578999999999999964 666653 2453 4677777654 455666666653222111
Q ss_pred ccCCCCHHHH-----HHHHHHHh--cCCcEEEEEeccc
Q 041248 241 SWKSKSVEEK-----ALDIFRSL--REKRFVLLLDDIW 271 (813)
Q Consensus 241 ~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv~ 271 (813)
..+....... .-.+.+++ +++.+|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 0111111111 11223333 5799999999984
No 482
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.75 E-value=0.76 Score=49.64 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHH
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
...++.|.|.+|+||||+|.+++.+... . -..++|++.. .+..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlE--ms~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLE--MGKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSS--SCTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECC--CCHHHHHHHHHH
Confidence 4568999999999999999999887632 2 2356666543 344455555544
No 483
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.74 E-value=0.6 Score=44.77 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEE
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCV 213 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~ 213 (813)
...|.|-|+.|+||||+++.+..... ...+.++
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCcc
Confidence 46899999999999999999998872 2345543
No 484
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.71 E-value=0.22 Score=45.99 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 485
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.70 E-value=0.23 Score=45.41 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
--|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.70 E-value=0.23 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.--|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998764
No 487
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.68 E-value=0.19 Score=49.17 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
...+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999988664
No 488
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.64 E-value=0.35 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~ 202 (813)
...+++|+|..|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5579999999999999999999884
No 489
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.64 E-value=0.28 Score=45.29 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
....|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45688999999999999999997754
No 490
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.63 E-value=0.24 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998754
No 491
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.61 E-value=0.25 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
-|+|+|.+|+|||||+..+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997654
No 492
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.59 E-value=0.24 Score=45.20 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
-|+|+|.+|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988764
No 493
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.56 E-value=0.24 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
--|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998764
No 494
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.55 E-value=1.2 Score=48.57 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=40.8
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccC-HHHHHHHH
Q 041248 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLR-LEKIQEDI 231 (813)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 231 (813)
+++.+.. .+-..++|.|..|+|||+|++++.+.. +-+.++++-+++..+ ..++++++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555543 345688999999999999999988763 235788888887654 45555554
No 495
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.55 E-value=0.24 Score=44.97 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
--|+|+|.+|+|||||+..+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999987654
No 496
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.54 E-value=0.43 Score=47.02 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCH
Q 041248 181 IIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRL 224 (813)
Q Consensus 181 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 224 (813)
.|+|.|-||+||||+|..++...++ . . ..++-|......+.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~-~-g-~~VlliD~D~~~~l 42 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMAS-D-Y-DKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTT-T-C-SCEEEEEECTTSCH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH-C-C-CeEEEEeCCCCcCh
Confidence 3667999999999999999988832 2 2 34666666554443
No 497
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.51 E-value=0.24 Score=46.31 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
.--|+|+|.+|+|||||+..+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999998887653
No 498
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.44 E-value=0.34 Score=53.82 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
...+|+|+|+.|+|||||++.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999999876
No 499
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.42 E-value=0.52 Score=45.17 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEecCccCHHHHHHHHHH
Q 041248 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTSFDCVIWAVVSKDLRLEKIQEDIGK 233 (813)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (813)
..|.|-|..|+||||+++.+..... . ..+..+.+..-.....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-Q-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-H-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-H-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999998872 2 33422333322222234455555554
No 500
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.40 E-value=0.28 Score=51.67 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041248 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (813)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~~~~~~ 203 (813)
..+|+|.|+.|+||||||..++...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3689999999999999999998876
Done!