BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041250
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 159/315 (50%), Gaps = 58/315 (18%)
Query: 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
M LK A +LGI D I+ HGKPMTL+EL S+L ++ SK FFA+ +
Sbjct: 21 MALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 80
Query: 49 SSGNNNDEEQGYVLTNASKLLLKDNP---------------------------------L 75
+ +EE Y LT SKLL+ P L
Sbjct: 81 GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTL 140
Query: 76 SEYAGDESKLN-----------NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXX 124
E A ES + + F +AMASD+R+ +++Q+ K VFEGL SLVDV
Sbjct: 141 FECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-KLVLQENKRVFEGLESLVDVGGG 199
Query: 125 XXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILL 184
FP L+CT FD P VV L + NL +VGGDMFK+I A AVLLKW+L
Sbjct: 200 TGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLH 258
Query: 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTG 244
DWNDE+ +KILK KEAI+ GK KVII D+ + D E QL +++ M+ + G
Sbjct: 259 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG 318
Query: 245 TERDEKEWAKIFADS 259
ER ++EW K+ D+
Sbjct: 319 KERTKQEWEKLIYDA 333
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 159/315 (50%), Gaps = 58/315 (18%)
Query: 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
M LK A +LGI D I+ HGKPMTL+EL S+L ++ SK FFA+ +
Sbjct: 24 MALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 83
Query: 49 SSGNNNDEEQGYVLTNASKLLLKDNP---------------------------------L 75
+ +EE Y LT SKLL+ P L
Sbjct: 84 GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTL 143
Query: 76 SEYAGDESKLN-----------NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXX 124
E A ES + + F +AMASD+R+ +++Q+ K VFEGL SLVDV
Sbjct: 144 FECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-KLVLQENKRVFEGLESLVDVGGG 202
Query: 125 XXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILL 184
FP L+CT FD P VV L + NL +VGGDMFK+I A AVLLKW+L
Sbjct: 203 TGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLH 261
Query: 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTG 244
DWNDE+ +KILK KEAI+ GK KVII D+ + D E QL +++ M+ + G
Sbjct: 262 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG 321
Query: 245 TERDEKEWAKIFADS 259
ER ++EW K+ D+
Sbjct: 322 KERTKQEWEKLIYDA 336
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 159/315 (50%), Gaps = 58/315 (18%)
Query: 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
M LK A +LGI D I+ HGKPMTL+EL S+L ++ SK FFA+ +
Sbjct: 25 MALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 84
Query: 49 SSGNNNDEEQGYVLTNASKLLLKDNP---------------------------------L 75
+ +EE Y LT SKLL+ P L
Sbjct: 85 GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTL 144
Query: 76 SEYAGDESKLN-----------NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXX 124
E A ES + + F +AMASD+R+ +++Q+ K VFEGL SLVDV
Sbjct: 145 FECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-KLVLQENKRVFEGLESLVDVGGG 203
Query: 125 XXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILL 184
FP L+CT FD P VV L + NL +VGGDMFK+I A AVLLKW+L
Sbjct: 204 TGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLH 262
Query: 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTG 244
DWNDE+ +KILK KEAI+ GK KVII D+ + D E QL +++ M+ + G
Sbjct: 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG 322
Query: 245 TERDEKEWAKIFADS 259
ER ++EW K+ D+
Sbjct: 323 KERTKQEWEKLIYDA 337
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 163/304 (53%), Gaps = 48/304 (15%)
Query: 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN----NDE 56
M+LK A ++ IP+II HGKP++L+ LVS L + SK + ++ E
Sbjct: 31 MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKE 90
Query: 57 EQGYVLTNASKLLLKDN-----PLSEYAGDES---------------------------- 83
E+ Y LT AS+LL++ + P+ E D +
Sbjct: 91 EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGF 150
Query: 84 --------KLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXX 135
+ N FN+AMASD++L ++ ++ C VF+GL S+VDV
Sbjct: 151 WDFLDKNPEYNTSFNDAMASDSKL-INLALRDCDFVFDGLESIVDVGGGTGTTAKIICET 209
Query: 136 FPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKIL 195
FPKL+C FD P VV L S NL YVGGDMF +I A AVLLK+IL +W D++C++IL
Sbjct: 210 FPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 268
Query: 196 KKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKI 255
KKCKEA+T DGK+ KV I DM+ + +K + + + +L ++ M L G ER+E+EW K+
Sbjct: 269 KKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDV-NMACLNGKERNEEEWKKL 327
Query: 256 FADS 259
F ++
Sbjct: 328 FIEA 331
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 161/309 (52%), Gaps = 53/309 (17%)
Query: 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTI------NLSKTQCFFAQQ---KLVSSG 51
M+LK + ++ IP+II+ HGKP+TL+ LVS L I N+ + + A +++++
Sbjct: 31 MSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDNVQRLMRYLAHNGFFEIITNQ 90
Query: 52 NNNDEEQGYVLTNASKLLLKDNPLS----------------------------------- 76
+EE+ Y LT AS+LL+K L
Sbjct: 91 ELENEEEAYALTVASELLVKGTELCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVN 150
Query: 77 ------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXX 130
E+ + N +N+A+ASD+++ M + C VFEGL S+VDV
Sbjct: 151 LGCDLWEFLNKNPEYNTLYNDALASDSKMINLAM-KDCNLVFEGLESIVDVGGGNGTTGK 209
Query: 131 XXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEE 190
FPKL C FD P VV L NL YVGGDMF ++ A AVLLK +L DW D++
Sbjct: 210 IICETFPKLTCVVFDRPKVVENLCGS-NNLTYVGGDMFISVPKADAVLLKAVLHDWTDKD 268
Query: 191 CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEK 250
C+KILKKCKEA+T DGK+ KVI+ DM+ +K + + + +L + + + G ER+E+
Sbjct: 269 CIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKLLMNV-TISCVNGKERNEE 327
Query: 251 EWAKIFADS 259
EW K+F ++
Sbjct: 328 EWKKLFIEA 336
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 155/303 (51%), Gaps = 48/303 (15%)
Query: 2 TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN----NDEE 57
+LK A + IP+II HGKP++L+ LVS L + SK + ++ EE
Sbjct: 32 SLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLXRYLAHNGFFEIITKEE 91
Query: 58 QGYVLTNASKLLLKDNPLS----------------------------------------- 76
+ Y LT AS+LL++ + L
Sbjct: 92 ESYALTVASELLVRGSDLCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFW 151
Query: 77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
++ + N FN+A ASD++L ++ ++ C VF+GL S+VDV F
Sbjct: 152 DFLDKNPEYNTSFNDAXASDSKL-INLALRDCDFVFDGLESIVDVGGGTGTTAKIICETF 210
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
PKL+C FD P VV L S NL YVGGD F +I A AVLLK+IL +W D++C++ILK
Sbjct: 211 PKLKCIVFDRPQVVENL-SGSNNLTYVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILK 269
Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIF 256
KCKEA+T DGK+ KV I D + + +K + + + +L ++ L G ER+E+EW K+F
Sbjct: 270 KCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDV-NXACLNGKERNEEEWKKLF 328
Query: 257 ADS 259
++
Sbjct: 329 IEA 331
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
EY G + + N FNE M + + + T +++ + FEGL +LVDV +
Sbjct: 165 EYHGTDPRFNRVFNEGMKNHSIIITKKLLE-LYHGFEGLGTLVDVGGGVGATVAAIAAHY 223
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
P ++ FDLPHV++ + +VGGDMFK + +L+KWIL DW+D+ C +LK
Sbjct: 224 PTIKGVNFDLPHVIS-EAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLK 282
Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL---TGTERDEKEW 252
C +A+ GK V+++ ++ N + + S Q F + M++L G ER E+E+
Sbjct: 283 NCYDALPAHGK--VVLVQCILPVNPEANPSS---QGVFHVDMIMLAHNPGGRERYEREF 336
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Query: 77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
EY G + + N FN+ M SD T I + FEGL SLVDV +
Sbjct: 164 EYHGTDPRFNKVFNKGM-SDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKY 222
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
P ++ FDLPHV+ S +++VGGDMF +I A AV +KWI DW+DE C+K LK
Sbjct: 223 PTIKGINFDLPHVIEDAPS-YPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 281
Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL-LTGTERDEKEW 252
C EA+ +G KVI+ + I + + + ++ M+ G ER +KE+
Sbjct: 282 NCYEALPDNG---KVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEF 335
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 10/179 (5%)
Query: 77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
+Y G + ++N FN+ M+S++ + T I + N FEGL ++VDV +
Sbjct: 167 DYHGTDHRINKVFNKGMSSNSTI-TMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY 225
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
P + FDLPHV+ + ++++GGDMF + A+ +KWI DW+DE C+K+LK
Sbjct: 226 PSINAINFDLPHVIQDAPA-FSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLK 284
Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL---TGTERDEKEW 252
C A+ G KVI+ + I SI T++ ++L G ER EKE+
Sbjct: 285 NCYAALPDHG---KVIVAEYILPPSPD--PSIATKVVIHTDALMLAYNPGGKERTEKEF 338
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
E+ G + K+N FN++M M++ FEG+++LVDV +
Sbjct: 173 EFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTG-FEGISTLVDVGGGSGRNLELIISKY 231
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
P ++ FDLP V+ L +++VGGDMF ++ A++LK + +W+DE+C++ L
Sbjct: 232 PLIKGINFDLPQVIEN-APPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLS 290
Query: 197 KCKEAITRDGKKRKVIIKDMI---KENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA 253
C +A++ +G KVII + I + N ++ K + T + M + + G ER EK++
Sbjct: 291 NCHKALSPNG---KVIIVEFILPEEPNTSEESKLVST---LDNLMFITVGGRERTEKQYE 344
Query: 254 KI 255
K+
Sbjct: 345 KL 346
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
E+ G + K N FN++ D + FEG+++LVDV +
Sbjct: 173 EFXGKDKKXNQIFNKSXV-DVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKY 231
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
P ++ FDLP V+ L +++VGGD F ++ A +LK + +W+DE+C++ L
Sbjct: 232 PLIKGINFDLPQVIEN-APPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEFLS 290
Query: 197 KCKEAITRDGKKRKVIIKDMI---KENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA 253
C +A++ +G KVII + I + N ++ K + T + + + G ER EK++
Sbjct: 291 NCHKALSPNG---KVIIVEFILPEEPNTSEESKLVST---LDNLXFITVGGRERTEKQYE 344
Query: 254 KI 255
K+
Sbjct: 345 KL 346
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 155 SDLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVII 213
SD V++ V GD F+ + A A++L ++LL+W D + V+IL +C EA+ G +++I
Sbjct: 232 SDRVDV--VEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGG---RILI 286
Query: 214 --KDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259
+D + EN + T+L ++ M+V L G R ++W + A +
Sbjct: 287 HERDDLHEN---SFNEQFTEL--DLRMLVFLGGALRTREKWDGLAASA 329
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 17/186 (9%)
Query: 81 DESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLE 140
++ K FN A S L + + + F G + VD+ FP L
Sbjct: 171 EDPKARELFNRAXGS-VSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLXAAVLDAFPGLR 228
Query: 141 CTCFDLPHVVNGLESDLVNL------KYVGGDMFKAISPAYAV-LLKWILLDWNDEECVK 193
T + P V L + + GD F+ I V L+K +L DW+D++ V+
Sbjct: 229 GTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVR 288
Query: 194 ILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA 253
IL++ A D R ++I ++I D + + LF ++ ++VL+ G ER E E+A
Sbjct: 289 ILRRIATAXKPD--SRLLVIDNLI------DERPAASTLFVDLLLLVLVGGAERSESEFA 340
Query: 254 KIFADS 259
+ S
Sbjct: 341 ALLEKS 346
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 25/157 (15%)
Query: 86 NNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFD 145
N +F E S+A+ A +++++ K +G+ ++DV FP+L+ T +
Sbjct: 164 NLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILN 221
Query: 146 LPHVVNGLESDLVN-----------LKYVGGDMFKAISP-AYAVLLKWILLDWNDEECVK 193
LP + DLVN ++ + D++K P A AVL IL N++
Sbjct: 222 LPGAI-----DLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTI 276
Query: 194 ILKKCKEAITRDGKKRKVIIKDMI---KENRKKDYKS 227
+ KK +A+ G +++I DM+ EN DY S
Sbjct: 277 MCKKAFDAMRSGG---RLLILDMVIDDPENPNFDYLS 310
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 11/149 (7%)
Query: 112 FEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNL----KYVGGDM 167
F ++ DV P L+ D VV D ++ K V GD
Sbjct: 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF 241
Query: 168 FKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKS 227
+ + A +LK IL +W DE+ V+IL C+ G +V++ D + ++S
Sbjct: 242 LREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHG---RVLVIDAVVPEGNDAHQS 298
Query: 228 IETQLFFEMFMMVLLTGTERDEKEWAKIF 256
E + + TG ER E +F
Sbjct: 299 KEX----DFXXLAARTGQERTAAELEPLF 323
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 165 GDMFKAIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK 223
GD FK + A VLL ++LL+W+DE+ + IL+ C A+ G+ + D+ + +
Sbjct: 239 GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADR 298
Query: 224 DYKSIETQLFFEMFMMVLLTGTERDEKE 251
+ ++ ++ M+ + G R E
Sbjct: 299 FFSTL-----LDLRMLTFMGGRVRTRDE 321
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 165 GDMFKAIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGK 207
GD FK + A VLL ++LL+W+DE+ + IL+ C A+ G+
Sbjct: 239 GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGR 282
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 159 NLKYVGGDMFKAI-SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217
+ VGGDM + + S LL I+ D ++ +++L C+EA+ DG R V+I+ I
Sbjct: 218 RVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDG--RVVVIERTI 275
Query: 218 KEN 220
+
Sbjct: 276 SAS 278
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLF 233
A +L +L DW+D V IL++C EA G V++ + + +
Sbjct: 236 AGGYVLSAVLHDWDDLSAVAILRRCAEAA---GSGGVVLVIEAVAGDEHAGTG------- 285
Query: 234 FEMFMMVLLTGTERDEKEWAKIFADS 259
++ M+ G ER E ++ A +
Sbjct: 286 MDLRMLTYFGGKERSLAELGELAAQA 311
>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A
Sam-dependent Methyltransferase Of The Duf858/pfam05891
Family
Length = 254
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 177 VLLKWILLDWNDEECVKILKKCKEAITRDG 206
++++W + D + VK K C++A+T +G
Sbjct: 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNG 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,790,223
Number of Sequences: 62578
Number of extensions: 243604
Number of successful extensions: 664
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 30
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)