Query 041250
Match_columns 259
No_of_seqs 205 out of 2166
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:15:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 1.3E-40 2.8E-45 280.9 19.4 196 56-257 2-241 (241)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 1.3E-37 2.8E-42 271.3 20.9 245 1-259 5-297 (306)
3 KOG3178 Hydroxyindole-O-methyl 100.0 3.7E-35 8.1E-40 250.9 14.0 252 1-259 21-321 (342)
4 TIGR00740 methyltransferase, p 99.7 3.7E-17 7.9E-22 137.8 14.9 139 113-259 52-218 (239)
5 COG2226 UbiE Methylase involve 99.7 1.5E-16 3.3E-21 132.2 14.3 106 113-223 50-164 (238)
6 PF12847 Methyltransf_18: Meth 99.7 3.2E-16 6.9E-21 116.3 11.6 98 115-215 2-111 (112)
7 PRK15451 tRNA cmo(5)U34 methyl 99.7 1E-15 2.3E-20 129.5 15.7 107 113-222 55-171 (247)
8 PTZ00098 phosphoethanolamine N 99.7 1.3E-15 2.7E-20 130.1 16.2 146 101-259 41-193 (263)
9 PLN02233 ubiquinone biosynthes 99.7 2E-15 4.3E-20 128.8 13.2 105 112-221 71-188 (261)
10 PF01209 Ubie_methyltran: ubiE 99.6 7.7E-16 1.7E-20 128.8 10.3 105 112-221 45-159 (233)
11 PRK06922 hypothetical protein; 99.6 2.9E-15 6.3E-20 139.1 13.7 141 77-222 381-544 (677)
12 PLN02244 tocopherol O-methyltr 99.6 2E-14 4.3E-19 127.1 16.6 141 113-259 117-269 (340)
13 PRK14103 trans-aconitate 2-met 99.6 1.3E-14 2.9E-19 123.3 13.0 105 102-215 19-126 (255)
14 KOG1540 Ubiquinone biosynthesi 99.6 3.1E-14 6.7E-19 117.1 14.4 142 113-259 99-272 (296)
15 PRK11207 tellurite resistance 99.6 1.5E-14 3.3E-19 118.3 12.7 113 101-220 19-139 (197)
16 PLN02336 phosphoethanolamine N 99.6 3.5E-14 7.5E-19 131.1 16.1 142 102-259 256-405 (475)
17 TIGR02752 MenG_heptapren 2-hep 99.6 2.4E-14 5.2E-19 119.8 13.7 110 103-219 36-155 (231)
18 PRK11873 arsM arsenite S-adeno 99.6 4.5E-14 9.7E-19 121.2 14.7 137 112-259 75-221 (272)
19 PF13847 Methyltransf_31: Meth 99.6 2.2E-14 4.8E-19 112.5 11.6 99 114-217 3-112 (152)
20 PF08241 Methyltransf_11: Meth 99.6 1.8E-14 3.8E-19 103.1 9.7 89 119-213 1-95 (95)
21 PRK01683 trans-aconitate 2-met 99.6 4.8E-14 1E-18 120.0 13.6 107 101-214 20-129 (258)
22 PLN02490 MPBQ/MSBQ methyltrans 99.6 3.4E-14 7.3E-19 124.5 12.6 129 114-259 113-247 (340)
23 smart00828 PKS_MT Methyltransf 99.5 1E-13 2.3E-18 115.5 13.4 98 116-218 1-107 (224)
24 TIGR03587 Pse_Me-ase pseudamin 99.5 9.8E-14 2.1E-18 114.0 11.7 104 112-220 41-147 (204)
25 PRK15068 tRNA mo(5)U34 methylt 99.5 2.1E-13 4.6E-18 119.5 14.4 143 104-259 114-265 (322)
26 TIGR00477 tehB tellurite resis 99.5 1.3E-13 2.7E-18 112.7 12.0 111 102-219 20-137 (195)
27 smart00138 MeTrc Methyltransfe 99.5 1.1E-13 2.5E-18 118.0 12.2 101 113-216 98-243 (264)
28 TIGR00452 methyltransferase, p 99.5 5.2E-13 1.1E-17 116.1 14.6 110 104-221 113-231 (314)
29 PF13649 Methyltransf_25: Meth 99.5 1.2E-13 2.6E-18 100.7 9.0 89 118-209 1-101 (101)
30 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 6.2E-13 1.3E-17 110.3 14.4 111 104-221 31-149 (223)
31 PF08242 Methyltransf_12: Meth 99.5 7.4E-15 1.6E-19 106.7 2.4 88 119-211 1-99 (99)
32 PRK08317 hypothetical protein; 99.5 9E-13 1.9E-17 110.3 15.3 107 104-217 11-126 (241)
33 PRK00216 ubiE ubiquinone/menaq 99.5 8.4E-13 1.8E-17 110.6 14.6 111 104-221 43-164 (239)
34 PLN02396 hexaprenyldihydroxybe 99.5 2.1E-13 4.5E-18 119.1 10.9 135 114-259 131-280 (322)
35 PRK10258 biotin biosynthesis p 99.5 1.5E-12 3.3E-17 110.4 15.5 124 85-217 9-142 (251)
36 TIGR02072 BioC biotin biosynth 99.5 1E-12 2.2E-17 110.1 14.2 98 114-216 34-136 (240)
37 PLN02336 phosphoethanolamine N 99.5 9E-13 1.9E-17 121.8 14.8 114 101-221 26-148 (475)
38 PRK11036 putative S-adenosyl-L 99.5 5.3E-13 1.1E-17 113.5 11.9 128 83-217 7-151 (255)
39 COG2230 Cfa Cyclopropane fatty 99.5 2E-12 4.3E-17 109.6 14.9 116 101-222 61-183 (283)
40 COG4106 Tam Trans-aconitate me 99.5 4.4E-13 9.5E-18 107.8 9.8 108 101-215 19-129 (257)
41 PF02353 CMAS: Mycolic acid cy 99.5 6E-13 1.3E-17 113.8 11.2 114 102-221 52-172 (273)
42 PF13489 Methyltransf_23: Meth 99.4 8.5E-13 1.8E-17 103.8 10.9 129 112-259 20-154 (161)
43 PRK12335 tellurite resistance 99.4 1.3E-12 2.7E-17 113.1 12.8 110 103-219 111-227 (287)
44 PLN03075 nicotianamine synthas 99.4 8.8E-13 1.9E-17 112.9 11.3 99 113-215 122-233 (296)
45 PRK15001 SAM-dependent 23S rib 99.4 1.5E-12 3.2E-17 115.8 12.6 109 102-215 218-340 (378)
46 PF05175 MTS: Methyltransferas 99.4 2.8E-12 6.2E-17 102.4 11.6 109 103-216 22-141 (170)
47 PRK06202 hypothetical protein; 99.4 4.8E-12 1E-16 106.1 13.3 102 113-219 59-170 (232)
48 PF05401 NodS: Nodulation prot 99.4 1.2E-12 2.6E-17 104.7 8.6 100 112-216 41-147 (201)
49 PRK08287 cobalt-precorrin-6Y C 99.4 2.9E-12 6.2E-17 104.0 11.1 102 105-216 24-132 (187)
50 PRK11705 cyclopropane fatty ac 99.4 8.2E-12 1.8E-16 111.9 14.8 111 104-220 159-272 (383)
51 PF03848 TehB: Tellurite resis 99.4 4.8E-12 1E-16 102.2 11.7 110 102-218 20-136 (192)
52 TIGR02021 BchM-ChlM magnesium 99.4 1.3E-11 2.7E-16 102.7 13.8 90 113-204 54-150 (219)
53 PRK09489 rsmC 16S ribosomal RN 99.4 9.3E-12 2E-16 109.9 12.6 109 103-216 187-304 (342)
54 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.7E-11 3.6E-16 101.3 13.3 102 113-219 33-156 (213)
55 TIGR02469 CbiT precorrin-6Y C5 99.3 2.7E-11 5.9E-16 91.0 12.8 101 104-214 11-121 (124)
56 PRK05785 hypothetical protein; 99.3 1.3E-11 2.7E-16 103.1 11.1 96 114-220 51-150 (226)
57 TIGR00138 gidB 16S rRNA methyl 99.3 7.5E-12 1.6E-16 100.9 9.1 92 115-215 43-142 (181)
58 COG2813 RsmC 16S RNA G1207 met 99.3 2.3E-11 5E-16 103.5 11.8 111 101-216 147-267 (300)
59 PRK00107 gidB 16S rRNA methylt 99.3 1.8E-11 3.9E-16 99.1 10.5 95 113-216 44-146 (187)
60 PF06080 DUF938: Protein of un 99.3 9.3E-11 2E-15 94.9 13.5 150 103-258 13-182 (204)
61 TIGR00537 hemK_rel_arch HemK-r 99.3 3.8E-11 8.2E-16 96.7 11.3 102 113-219 18-144 (179)
62 TIGR03438 probable methyltrans 99.3 3.6E-11 7.8E-16 104.7 11.1 99 113-214 62-176 (301)
63 KOG1270 Methyltransferases [Co 99.3 1.5E-11 3.3E-16 101.9 7.9 96 115-217 90-197 (282)
64 PRK13255 thiopurine S-methyltr 99.3 1.3E-10 2.9E-15 96.4 13.6 113 102-219 24-159 (218)
65 PRK00121 trmB tRNA (guanine-N( 99.2 2.6E-11 5.6E-16 99.6 8.6 99 114-215 40-156 (202)
66 COG2227 UbiG 2-polyprenyl-3-me 99.2 2.5E-11 5.3E-16 99.8 7.6 97 114-217 59-163 (243)
67 PRK07580 Mg-protoporphyrin IX 99.2 1.3E-10 2.9E-15 97.0 11.9 90 113-204 62-158 (230)
68 PLN02585 magnesium protoporphy 99.2 1.2E-10 2.6E-15 101.6 10.5 93 114-213 144-247 (315)
69 PRK13944 protein-L-isoaspartat 99.2 2.4E-10 5.2E-15 94.1 11.4 98 104-214 64-172 (205)
70 TIGR03533 L3_gln_methyl protei 99.2 2.1E-10 4.5E-15 99.0 11.4 99 114-216 121-251 (284)
71 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.4E-10 3.1E-15 94.6 9.5 98 114-215 16-132 (194)
72 PRK05134 bifunctional 3-demeth 99.2 4.7E-10 1E-14 94.0 12.8 97 113-216 47-152 (233)
73 PRK04266 fibrillarin; Provisio 99.2 3.2E-10 7E-15 94.5 11.5 95 112-214 70-175 (226)
74 KOG2361 Predicted methyltransf 99.2 9.8E-11 2.1E-15 95.9 8.0 173 82-259 35-228 (264)
75 COG2242 CobL Precorrin-6B meth 99.2 5.5E-10 1.2E-14 88.8 11.4 102 105-217 27-137 (187)
76 PRK13256 thiopurine S-methyltr 99.2 9E-10 1.9E-14 91.3 13.2 122 101-227 29-175 (226)
77 PRK11088 rrmA 23S rRNA methylt 99.1 1.4E-10 3E-15 99.6 8.6 91 114-216 85-182 (272)
78 TIGR03534 RF_mod_PrmC protein- 99.1 4E-10 8.7E-15 95.3 11.2 98 114-214 87-216 (251)
79 PRK13942 protein-L-isoaspartat 99.1 5.8E-10 1.3E-14 92.3 11.7 99 103-214 67-175 (212)
80 PRK11805 N5-glutamine S-adenos 99.1 3.7E-10 8.1E-15 98.4 11.0 97 116-216 135-263 (307)
81 PF05891 Methyltransf_PK: AdoM 99.1 2.4E-10 5.1E-15 93.1 8.4 129 114-259 55-192 (218)
82 PRK07402 precorrin-6B methylas 99.1 6E-10 1.3E-14 91.0 10.8 103 104-217 32-144 (196)
83 PRK04457 spermidine synthase; 99.1 3.1E-10 6.6E-15 96.8 9.4 98 113-214 65-176 (262)
84 TIGR00080 pimt protein-L-isoas 99.1 8E-10 1.7E-14 91.6 11.6 99 103-214 68-176 (215)
85 TIGR00536 hemK_fam HemK family 99.1 1.2E-09 2.5E-14 94.5 12.4 98 116-217 116-245 (284)
86 PF13659 Methyltransf_26: Meth 99.1 5E-10 1.1E-14 83.4 8.1 96 116-215 2-115 (117)
87 PRK09328 N5-glutamine S-adenos 99.1 1.9E-09 4.2E-14 92.5 12.6 99 112-213 106-236 (275)
88 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.4E-09 3E-14 96.7 11.6 107 104-216 114-236 (390)
89 cd02440 AdoMet_MTases S-adenos 99.1 1.4E-09 2.9E-14 77.9 9.5 93 117-214 1-103 (107)
90 COG4123 Predicted O-methyltran 99.1 6.5E-10 1.4E-14 92.8 8.7 109 104-216 35-171 (248)
91 PRK11188 rrmJ 23S rRNA methylt 99.1 2.6E-09 5.7E-14 88.1 12.0 104 104-216 42-166 (209)
92 TIGR01983 UbiG ubiquinone bios 99.1 1.6E-09 3.5E-14 90.1 10.8 96 114-216 45-150 (224)
93 PRK14966 unknown domain/N5-glu 99.0 2.1E-09 4.5E-14 96.2 11.6 101 113-217 250-382 (423)
94 KOG4300 Predicted methyltransf 99.0 1.2E-09 2.6E-14 87.6 8.9 137 113-257 75-222 (252)
95 PRK00377 cbiT cobalt-precorrin 99.0 2.5E-09 5.3E-14 87.6 10.8 98 106-213 34-143 (198)
96 PF05724 TPMT: Thiopurine S-me 99.0 2.9E-09 6.2E-14 88.3 11.0 122 101-227 23-168 (218)
97 PRK14967 putative methyltransf 99.0 4.7E-09 1E-13 87.5 11.4 103 112-218 34-162 (223)
98 TIGR00406 prmA ribosomal prote 99.0 4.4E-09 9.6E-14 91.0 10.8 96 113-217 158-261 (288)
99 PRK14968 putative methyltransf 99.0 7.7E-09 1.7E-13 83.4 11.5 99 113-216 22-149 (188)
100 PRK00517 prmA ribosomal protei 99.0 6.8E-09 1.5E-13 88.0 11.4 93 112-218 117-216 (250)
101 PF12147 Methyltransf_20: Puta 99.0 9.3E-09 2E-13 86.9 11.7 140 113-259 134-289 (311)
102 PF08003 Methyltransf_9: Prote 99.0 1.2E-08 2.6E-13 87.0 12.3 112 103-222 106-226 (315)
103 PRK01544 bifunctional N5-gluta 99.0 4.6E-09 1E-13 97.5 10.6 96 115-213 139-267 (506)
104 PHA03411 putative methyltransf 98.9 5.7E-09 1.2E-13 88.4 10.0 97 115-214 65-182 (279)
105 PRK00312 pcm protein-L-isoaspa 98.9 1.2E-08 2.5E-13 84.4 11.6 97 104-215 70-175 (212)
106 KOG2899 Predicted methyltransf 98.9 5.7E-09 1.2E-13 85.6 9.3 111 102-216 46-209 (288)
107 TIGR02081 metW methionine bios 98.9 5.4E-09 1.2E-13 85.2 9.2 87 113-204 12-104 (194)
108 PRK00811 spermidine synthase; 98.9 9E-09 1.9E-13 88.8 10.1 99 113-214 75-190 (283)
109 TIGR03704 PrmC_rel_meth putati 98.9 1.1E-08 2.4E-13 86.8 10.1 97 115-214 87-215 (251)
110 COG2890 HemK Methylase of poly 98.9 1.3E-08 2.9E-13 87.5 10.4 100 117-220 113-242 (280)
111 TIGR00438 rrmJ cell division p 98.9 1.6E-08 3.5E-13 82.0 9.9 95 112-214 30-145 (188)
112 PF07021 MetW: Methionine bios 98.9 1.2E-08 2.5E-13 81.7 8.7 85 112-201 11-101 (193)
113 PF01739 CheR: CheR methyltran 98.8 5.9E-09 1.3E-13 84.9 5.8 100 114-216 31-176 (196)
114 PRK13943 protein-L-isoaspartat 98.8 2.6E-08 5.7E-13 87.1 10.0 99 104-215 72-180 (322)
115 PTZ00146 fibrillarin; Provisio 98.8 6.4E-08 1.4E-12 82.9 11.9 95 112-214 130-236 (293)
116 smart00650 rADc Ribosomal RNA 98.8 2.9E-08 6.4E-13 79.1 9.2 89 102-195 3-98 (169)
117 PLN02366 spermidine synthase 98.8 3.6E-08 7.8E-13 85.8 10.2 99 112-214 89-205 (308)
118 TIGR00417 speE spermidine synt 98.8 4.1E-08 8.9E-13 84.2 9.7 99 113-214 71-185 (270)
119 PHA03412 putative methyltransf 98.8 5.5E-08 1.2E-12 80.7 9.7 95 115-213 50-160 (241)
120 PRK01581 speE spermidine synth 98.8 5.5E-08 1.2E-12 85.6 10.2 100 112-214 148-267 (374)
121 PRK10611 chemotaxis methyltran 98.8 4.3E-08 9.4E-13 84.3 9.4 99 114-215 115-262 (287)
122 KOG1271 Methyltransferases [Ge 98.8 2.7E-08 5.7E-13 78.4 7.1 100 116-218 69-184 (227)
123 PLN02232 ubiquinone biosynthes 98.8 2.8E-08 6E-13 78.6 7.5 75 142-221 1-87 (160)
124 TIGR01177 conserved hypothetic 98.8 1.1E-07 2.4E-12 83.9 12.0 100 112-216 180-295 (329)
125 COG2264 PrmA Ribosomal protein 98.7 6.8E-08 1.5E-12 82.9 9.7 108 101-217 149-265 (300)
126 PF06325 PrmA: Ribosomal prote 98.7 6.6E-08 1.4E-12 83.4 9.4 104 104-218 151-262 (295)
127 PF01135 PCMT: Protein-L-isoas 98.7 5.6E-08 1.2E-12 80.0 8.4 101 103-216 63-173 (209)
128 COG1352 CheR Methylase of chem 98.7 2.3E-07 5E-12 78.9 12.2 137 77-216 48-242 (268)
129 PLN02781 Probable caffeoyl-CoA 98.7 4E-07 8.7E-12 76.4 13.0 96 112-215 66-178 (234)
130 PRK10901 16S rRNA methyltransf 98.7 1.9E-07 4.1E-12 85.2 11.9 105 112-219 242-376 (427)
131 PF03291 Pox_MCEL: mRNA cappin 98.7 8.8E-08 1.9E-12 84.2 9.2 99 114-216 62-187 (331)
132 PRK14902 16S rRNA methyltransf 98.7 2.3E-07 4.9E-12 85.2 11.8 104 112-218 248-382 (444)
133 TIGR00563 rsmB ribosomal RNA s 98.7 1.7E-07 3.6E-12 85.6 10.7 112 104-220 230-373 (426)
134 COG2518 Pcm Protein-L-isoaspar 98.6 3.6E-07 7.7E-12 74.3 10.7 98 104-216 64-170 (209)
135 PRK03612 spermidine synthase; 98.6 1.6E-07 3.5E-12 87.6 10.0 99 113-215 296-415 (521)
136 PF02390 Methyltransf_4: Putat 98.6 2.3E-07 5E-12 75.7 9.6 96 117-216 20-134 (195)
137 PRK14904 16S rRNA methyltransf 98.6 4.2E-07 9.2E-12 83.4 12.4 105 112-219 248-381 (445)
138 PF04672 Methyltransf_19: S-ad 98.6 4.5E-07 9.8E-12 76.5 11.4 136 114-257 68-227 (267)
139 PLN02672 methionine S-methyltr 98.6 2.9E-07 6.2E-12 91.3 10.6 99 115-217 119-279 (1082)
140 PRK14901 16S rRNA methyltransf 98.6 6.2E-07 1.3E-11 82.0 11.4 105 112-219 250-388 (434)
141 PF08123 DOT1: Histone methyla 98.6 3.2E-07 6.9E-12 75.3 8.5 112 102-221 32-164 (205)
142 TIGR00446 nop2p NOL1/NOP2/sun 98.6 8.3E-07 1.8E-11 75.9 11.3 106 112-220 69-204 (264)
143 PRK14903 16S rRNA methyltransf 98.5 7.9E-07 1.7E-11 81.2 11.6 106 112-220 235-371 (431)
144 PRK14896 ksgA 16S ribosomal RN 98.5 6.2E-07 1.3E-11 76.4 10.0 82 101-187 18-104 (258)
145 KOG3010 Methyltransferase [Gen 98.5 3E-07 6.6E-12 75.7 7.6 98 113-217 32-139 (261)
146 PRK00274 ksgA 16S ribosomal RN 98.5 3.6E-07 7.8E-12 78.5 8.5 69 101-173 31-103 (272)
147 TIGR00755 ksgA dimethyladenosi 98.5 5.7E-07 1.2E-11 76.4 9.6 86 101-190 18-110 (253)
148 PF10294 Methyltransf_16: Puta 98.5 4.9E-07 1.1E-11 72.4 7.9 102 112-218 43-159 (173)
149 COG2519 GCD14 tRNA(1-methylade 98.5 2E-06 4.4E-11 71.6 11.3 118 92-221 70-201 (256)
150 PF05148 Methyltransf_8: Hypot 98.5 2.1E-06 4.5E-11 69.6 10.3 125 77-220 32-163 (219)
151 PF08100 Dimerisation: Dimeris 98.4 1.5E-08 3.3E-13 63.7 -1.8 45 1-45 1-50 (51)
152 COG2263 Predicted RNA methylas 98.4 1.2E-06 2.5E-11 69.8 7.8 69 115-184 46-119 (198)
153 KOG1975 mRNA cap methyltransfe 98.4 1.1E-06 2.4E-11 75.3 7.6 95 113-212 116-234 (389)
154 PRK10909 rsmD 16S rRNA m(2)G96 98.4 1.4E-06 3E-11 71.2 7.9 98 114-219 53-162 (199)
155 PTZ00338 dimethyladenosine tra 98.4 2E-06 4.3E-11 74.5 9.4 89 102-195 26-122 (294)
156 PRK04148 hypothetical protein; 98.4 8.3E-06 1.8E-10 62.0 11.1 100 102-217 6-111 (134)
157 COG4976 Predicted methyltransf 98.4 4.1E-07 8.8E-12 74.4 4.1 129 84-221 93-231 (287)
158 PF01596 Methyltransf_3: O-met 98.3 9.5E-07 2.1E-11 72.5 6.2 99 112-219 43-158 (205)
159 COG3963 Phospholipid N-methylt 98.3 8.1E-06 1.7E-10 63.7 10.5 114 99-217 35-158 (194)
160 PLN02476 O-methyltransferase 98.3 6.6E-06 1.4E-10 70.4 11.0 99 112-219 116-231 (278)
161 KOG1541 Predicted protein carb 98.3 1.6E-06 3.5E-11 70.5 6.8 104 105-215 41-160 (270)
162 PF09243 Rsm22: Mitochondrial 98.3 4.2E-06 9.1E-11 71.9 9.7 103 114-221 33-145 (274)
163 PRK13168 rumA 23S rRNA m(5)U19 98.3 2.7E-06 5.9E-11 78.0 8.7 85 112-204 295-392 (443)
164 PLN02823 spermine synthase 98.3 5.1E-06 1.1E-10 73.2 9.6 97 113-213 102-218 (336)
165 PF08704 GCD14: tRNA methyltra 98.3 7.6E-06 1.6E-10 68.9 9.6 121 88-220 12-151 (247)
166 COG0220 Predicted S-adenosylme 98.2 9.1E-06 2E-10 67.6 9.5 96 116-215 50-164 (227)
167 COG4122 Predicted O-methyltran 98.2 8.7E-06 1.9E-10 67.1 9.2 101 112-221 57-171 (219)
168 PRK11727 23S rRNA mA1618 methy 98.2 5.4E-06 1.2E-10 72.5 8.1 76 114-189 114-205 (321)
169 PF05185 PRMT5: PRMT5 arginine 98.2 6E-06 1.3E-10 75.5 8.8 94 115-211 187-293 (448)
170 PRK11783 rlmL 23S rRNA m(2)G24 98.2 6.7E-06 1.4E-10 79.6 9.5 98 114-215 538-656 (702)
171 KOG1500 Protein arginine N-met 98.2 7.8E-06 1.7E-10 70.5 8.5 94 115-212 178-279 (517)
172 PRK15128 23S rRNA m(5)C1962 me 98.2 1.1E-05 2.3E-10 72.9 9.9 100 113-216 219-340 (396)
173 COG0421 SpeE Spermidine syntha 98.2 1.1E-05 2.4E-10 69.3 9.2 99 113-214 75-189 (282)
174 PF01564 Spermine_synth: Sperm 98.2 4.7E-06 1E-10 70.4 6.7 100 113-215 75-191 (246)
175 KOG1661 Protein-L-isoaspartate 98.2 6.5E-06 1.4E-10 66.5 6.8 92 112-214 80-192 (237)
176 KOG1499 Protein arginine N-met 98.1 9.3E-06 2E-10 70.6 7.7 95 114-212 60-164 (346)
177 PRK03522 rumB 23S rRNA methylu 98.1 1.7E-05 3.6E-10 69.6 9.5 67 114-182 173-249 (315)
178 KOG2904 Predicted methyltransf 98.1 3.8E-05 8.3E-10 64.6 10.5 101 113-217 147-286 (328)
179 PLN02589 caffeoyl-CoA O-methyl 98.1 2.1E-05 4.5E-10 66.4 9.1 99 112-219 77-193 (247)
180 PRK00536 speE spermidine synth 98.1 2.3E-05 4.9E-10 66.6 9.3 89 112-213 70-169 (262)
181 KOG3045 Predicted RNA methylas 98.1 4.5E-05 9.7E-10 63.7 10.5 120 78-218 141-267 (325)
182 PRK00050 16S rRNA m(4)C1402 me 98.1 1.1E-05 2.4E-10 69.7 7.2 78 101-180 8-97 (296)
183 TIGR00095 RNA methyltransferas 98.1 1.4E-05 3.1E-10 64.8 7.3 97 115-219 50-162 (189)
184 PF05219 DREV: DREV methyltran 98.0 4E-05 8.6E-10 64.3 9.3 96 114-219 94-191 (265)
185 KOG0820 Ribosomal RNA adenine 98.0 2.7E-05 5.8E-10 65.4 7.8 75 101-179 47-129 (315)
186 TIGR03439 methyl_EasF probable 98.0 5.5E-05 1.2E-09 66.2 9.5 98 113-213 75-195 (319)
187 KOG1331 Predicted methyltransf 98.0 1.7E-05 3.6E-10 67.1 6.0 98 114-219 45-147 (293)
188 TIGR02085 meth_trns_rumB 23S r 97.9 3.1E-05 6.7E-10 69.5 7.9 92 114-216 233-334 (374)
189 PRK01544 bifunctional N5-gluta 97.9 5.1E-05 1.1E-09 70.7 8.8 99 114-216 347-463 (506)
190 PF02527 GidB: rRNA small subu 97.9 3.8E-05 8.3E-10 61.9 6.9 90 117-215 51-148 (184)
191 TIGR00479 rumA 23S rRNA (uraci 97.9 2.6E-05 5.6E-10 71.4 6.6 92 112-213 290-394 (431)
192 COG5459 Predicted rRNA methyla 97.9 8.7E-06 1.9E-10 70.5 3.0 102 115-219 114-229 (484)
193 TIGR00478 tly hemolysin TlyA f 97.8 0.00026 5.6E-09 59.1 10.6 99 101-216 63-173 (228)
194 PF03141 Methyltransf_29: Puta 97.7 2.5E-05 5.4E-10 71.0 3.8 98 114-219 117-223 (506)
195 COG0030 KsgA Dimethyladenosine 97.7 0.00023 4.9E-09 60.2 9.0 84 101-189 19-110 (259)
196 PF11968 DUF3321: Putative met 97.7 0.00015 3.3E-09 59.3 7.5 87 115-216 52-150 (219)
197 PF13679 Methyltransf_32: Meth 97.7 0.00017 3.6E-09 55.7 7.2 85 112-200 23-122 (141)
198 PRK04338 N(2),N(2)-dimethylgua 97.7 0.00016 3.5E-09 64.9 7.9 91 115-214 58-157 (382)
199 KOG3191 Predicted N6-DNA-methy 97.6 0.00032 6.9E-09 55.7 8.2 102 115-219 44-172 (209)
200 COG0357 GidB Predicted S-adeno 97.6 0.0002 4.3E-09 59.0 7.1 89 115-212 68-165 (215)
201 KOG3115 Methyltransferase-like 97.6 0.00012 2.5E-09 59.1 5.3 101 114-217 60-185 (249)
202 PF09445 Methyltransf_15: RNA 97.6 5.2E-05 1.1E-09 59.8 3.3 64 116-181 1-77 (163)
203 PF01170 UPF0020: Putative RNA 97.6 0.0003 6.5E-09 56.6 7.8 102 101-204 17-143 (179)
204 COG3897 Predicted methyltransf 97.6 0.00057 1.2E-08 54.9 8.7 111 102-220 69-184 (218)
205 PF00398 RrnaAD: Ribosomal RNA 97.5 0.00033 7.1E-09 59.9 7.6 92 101-200 19-119 (262)
206 PF04816 DUF633: Family of unk 97.5 0.0004 8.6E-09 57.0 7.4 83 118-204 1-93 (205)
207 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.0012 2.6E-08 64.1 11.6 111 101-216 178-348 (702)
208 TIGR02143 trmA_only tRNA (urac 97.4 0.00034 7.3E-09 62.4 6.8 52 116-169 199-256 (353)
209 COG0500 SmtA SAM-dependent met 97.4 0.002 4.4E-08 48.6 9.5 97 118-221 52-161 (257)
210 COG0293 FtsJ 23S rRNA methylas 97.4 0.0024 5.1E-08 52.1 10.0 111 99-218 31-162 (205)
211 KOG3420 Predicted RNA methylas 97.3 0.00021 4.6E-09 54.6 3.5 68 115-184 49-125 (185)
212 PF03059 NAS: Nicotianamine sy 97.3 0.0011 2.4E-08 56.7 8.2 96 115-214 121-229 (276)
213 PF07091 FmrO: Ribosomal RNA m 97.3 0.00058 1.3E-08 57.1 6.3 124 90-218 76-211 (251)
214 COG4076 Predicted RNA methylas 97.3 0.00076 1.6E-08 53.8 6.2 95 116-215 34-135 (252)
215 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00072 1.6E-08 60.5 6.9 52 116-169 208-265 (362)
216 COG2521 Predicted archaeal met 97.3 0.00052 1.1E-08 56.7 5.3 97 112-212 132-242 (287)
217 TIGR01444 fkbM_fam methyltrans 97.3 0.00098 2.1E-08 51.1 6.6 53 117-169 1-59 (143)
218 PF01728 FtsJ: FtsJ-like methy 97.2 0.00042 9E-09 55.7 4.3 109 101-217 9-141 (181)
219 PF02475 Met_10: Met-10+ like- 97.2 0.0009 2E-08 54.7 6.1 91 112-211 99-198 (200)
220 PRK11933 yebU rRNA (cytosine-C 97.2 0.0041 8.9E-08 57.4 10.8 103 112-217 111-244 (470)
221 KOG2940 Predicted methyltransf 97.1 0.00093 2E-08 55.0 5.1 92 114-211 72-170 (325)
222 PRK11760 putative 23S rRNA C24 97.1 0.0021 4.5E-08 56.4 7.5 101 112-223 209-312 (357)
223 COG4262 Predicted spermidine s 97.1 0.0049 1.1E-07 54.2 9.6 94 113-215 288-407 (508)
224 PF03602 Cons_hypoth95: Conser 97.0 0.0014 3E-08 52.9 5.6 100 114-220 42-157 (183)
225 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0034 7.4E-08 54.8 8.3 102 112-216 44-184 (311)
226 PF11312 DUF3115: Protein of u 97.0 0.0029 6.3E-08 54.7 7.4 102 115-219 87-246 (315)
227 TIGR00308 TRM1 tRNA(guanine-26 96.9 0.0052 1.1E-07 55.1 8.4 91 116-215 46-147 (374)
228 KOG1709 Guanidinoacetate methy 96.8 0.021 4.5E-07 46.8 10.1 100 112-217 99-208 (271)
229 PF13578 Methyltransf_24: Meth 96.7 0.0011 2.4E-08 48.2 2.6 91 119-215 1-105 (106)
230 COG1092 Predicted SAM-dependen 96.7 0.0042 9E-08 55.9 6.5 100 115-219 218-340 (393)
231 TIGR00027 mthyl_TIGR00027 meth 96.7 0.013 2.9E-07 49.9 9.3 102 113-219 80-200 (260)
232 TIGR02987 met_A_Alw26 type II 96.7 0.008 1.7E-07 56.5 8.7 68 114-181 31-120 (524)
233 TIGR00006 S-adenosyl-methyltra 96.6 0.0084 1.8E-07 52.1 7.7 67 101-169 9-80 (305)
234 COG0116 Predicted N6-adenine-s 96.6 0.022 4.7E-07 50.8 10.2 100 101-202 180-330 (381)
235 COG2384 Predicted SAM-dependen 96.6 0.017 3.8E-07 47.4 8.8 69 113-181 15-93 (226)
236 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.5 0.0037 8E-08 53.0 4.6 99 114-217 56-201 (256)
237 KOG1663 O-methyltransferase [S 96.4 0.024 5.1E-07 46.9 8.4 98 112-218 71-185 (237)
238 KOG2915 tRNA(1-methyladenosine 96.4 0.03 6.5E-07 47.5 8.9 97 79-180 71-184 (314)
239 PF07757 AdoMet_MTase: Predict 96.3 0.0032 7E-08 45.7 2.7 31 114-146 58-88 (112)
240 COG3315 O-Methyltransferase in 96.3 0.014 3E-07 50.8 7.1 98 113-216 91-209 (297)
241 KOG4589 Cell division protein 96.3 0.032 6.9E-07 44.7 8.2 103 104-216 60-185 (232)
242 PF01795 Methyltransf_5: MraW 96.2 0.015 3.3E-07 50.6 6.9 67 101-169 9-80 (310)
243 PF07942 N2227: N2227-like pro 96.2 0.034 7.5E-07 47.5 8.8 92 113-211 55-198 (270)
244 COG4798 Predicted methyltransf 96.2 0.03 6.5E-07 45.2 7.7 108 112-222 46-173 (238)
245 COG4301 Uncharacterized conser 96.1 0.039 8.3E-07 46.2 8.1 141 112-255 76-240 (321)
246 COG1041 Predicted DNA modifica 95.9 0.097 2.1E-06 46.1 10.4 100 112-216 195-311 (347)
247 KOG4058 Uncharacterized conser 95.9 0.024 5.3E-07 43.6 5.8 99 113-220 71-177 (199)
248 PF04072 LCM: Leucine carboxyl 95.8 0.026 5.7E-07 45.4 6.2 87 113-199 77-183 (183)
249 COG0742 N6-adenine-specific me 95.8 0.055 1.2E-06 43.6 7.8 100 115-219 44-157 (187)
250 PF10672 Methyltrans_SAM: S-ad 95.8 0.03 6.5E-07 48.3 6.8 99 114-216 123-239 (286)
251 smart00346 HTH_ICLR helix_turn 95.8 0.0029 6.2E-08 44.6 0.5 58 9-66 8-65 (91)
252 PF04989 CmcI: Cephalosporin h 95.7 0.067 1.5E-06 43.8 8.1 101 114-220 32-152 (206)
253 KOG1269 SAM-dependent methyltr 95.7 0.014 2.9E-07 52.2 4.2 102 115-222 111-222 (364)
254 KOG2730 Methylase [General fun 95.6 0.0083 1.8E-07 49.2 2.4 54 114-169 94-154 (263)
255 KOG3924 Putative protein methy 95.6 0.046 9.9E-07 48.7 7.0 112 104-223 184-316 (419)
256 KOG3987 Uncharacterized conser 95.6 0.003 6.6E-08 51.3 -0.3 99 113-219 111-210 (288)
257 COG2520 Predicted methyltransf 95.2 0.082 1.8E-06 46.7 7.4 101 113-223 187-297 (341)
258 KOG3201 Uncharacterized conser 95.1 0.014 3E-07 45.7 2.0 96 115-215 30-140 (201)
259 PF09339 HTH_IclR: IclR helix- 95.1 0.0015 3.3E-08 41.2 -2.7 43 9-51 6-48 (52)
260 COG0275 Predicted S-adenosylme 95.1 0.088 1.9E-06 45.4 7.0 67 101-169 12-84 (314)
261 COG1414 IclR Transcriptional r 95.0 0.0071 1.5E-07 51.2 0.3 58 9-66 7-64 (246)
262 TIGR02431 pcaR_pcaU beta-ketoa 94.9 0.0098 2.1E-07 50.3 0.8 57 9-67 12-68 (248)
263 KOG1562 Spermidine synthase [A 94.8 0.079 1.7E-06 45.5 6.0 103 112-218 119-239 (337)
264 PRK11569 transcriptional repre 94.8 0.011 2.3E-07 50.9 0.9 59 9-67 31-89 (274)
265 KOG2187 tRNA uracil-5-methyltr 94.8 0.028 6.1E-07 51.6 3.4 55 112-168 381-441 (534)
266 smart00550 Zalpha Z-DNA-bindin 94.7 0.0087 1.9E-07 40.0 -0.0 59 6-64 6-66 (68)
267 PF01269 Fibrillarin: Fibrilla 94.7 0.52 1.1E-05 39.0 10.2 104 112-223 71-186 (229)
268 KOG2793 Putative N2,N2-dimethy 94.6 0.21 4.5E-06 42.1 8.1 100 114-220 86-203 (248)
269 PRK10163 DNA-binding transcrip 94.6 0.012 2.7E-07 50.4 0.8 59 9-67 28-86 (271)
270 COG2265 TrmA SAM-dependent met 94.3 0.066 1.4E-06 49.0 4.9 85 112-204 291-388 (432)
271 PF05971 Methyltransf_10: Prot 94.3 0.19 4E-06 43.6 7.2 75 114-189 102-193 (299)
272 PF05958 tRNA_U5-meth_tr: tRNA 94.2 0.042 9.2E-07 49.0 3.3 49 117-167 199-253 (352)
273 PF01861 DUF43: Protein of unk 94.1 0.65 1.4E-05 38.9 9.7 93 115-213 45-147 (243)
274 COG4627 Uncharacterized protei 94.0 0.06 1.3E-06 41.9 3.2 42 173-217 47-88 (185)
275 PRK09834 DNA-binding transcrip 94.0 0.018 3.8E-07 49.2 0.3 61 9-69 14-74 (263)
276 PF04967 HTH_10: HTH DNA bindi 93.8 0.039 8.4E-07 34.9 1.6 38 2-43 8-45 (53)
277 PRK15090 DNA-binding transcrip 93.8 0.022 4.8E-07 48.4 0.6 58 9-67 17-74 (257)
278 COG1189 Predicted rRNA methyla 93.7 0.89 1.9E-05 38.0 9.8 100 101-211 67-174 (245)
279 KOG2352 Predicted spermine/spe 93.7 0.49 1.1E-05 43.5 9.0 102 117-223 51-171 (482)
280 PF03141 Methyltransf_29: Puta 93.6 0.18 3.9E-06 46.4 6.0 96 113-217 364-469 (506)
281 PRK10742 putative methyltransf 93.5 0.22 4.7E-06 42.0 6.0 111 101-220 75-224 (250)
282 KOG2918 Carboxymethyl transfer 93.0 0.81 1.8E-05 39.7 8.8 109 112-224 85-235 (335)
283 PLN02668 indole-3-acetate carb 92.9 1.7 3.7E-05 39.2 11.2 104 114-220 63-242 (386)
284 PF02082 Rrf2: Transcriptional 92.8 0.032 7E-07 38.7 0.1 48 20-67 24-72 (83)
285 COG1064 AdhP Zn-dependent alco 92.7 0.6 1.3E-05 41.3 7.8 94 112-218 164-262 (339)
286 COG0144 Sun tRNA and rRNA cyto 92.7 1.7 3.7E-05 38.8 10.9 106 112-220 154-293 (355)
287 KOG2798 Putative trehalase [Ca 92.4 0.98 2.1E-05 39.3 8.4 98 115-217 151-298 (369)
288 PRK10857 DNA-binding transcrip 92.2 0.076 1.7E-06 42.0 1.5 47 20-66 24-71 (164)
289 PF12692 Methyltransf_17: S-ad 92.1 1 2.2E-05 34.8 7.4 92 115-216 29-134 (160)
290 COG1889 NOP1 Fibrillarin-like 92.1 3.9 8.4E-05 33.5 11.1 106 112-225 74-190 (231)
291 PF06859 Bin3: Bicoid-interact 92.0 0.14 3.1E-06 37.4 2.6 39 174-216 2-44 (110)
292 KOG1501 Arginine N-methyltrans 91.9 0.28 6E-06 44.5 4.8 90 113-203 65-165 (636)
293 PF01189 Nol1_Nop2_Fmu: NOL1/N 91.2 0.88 1.9E-05 39.3 7.1 105 112-219 83-223 (283)
294 PF03492 Methyltransf_7: SAM d 90.8 1.2 2.5E-05 39.5 7.7 106 112-220 14-188 (334)
295 PF11899 DUF3419: Protein of u 90.8 0.62 1.3E-05 42.0 6.0 67 152-221 269-340 (380)
296 cd00092 HTH_CRP helix_turn_hel 90.4 0.17 3.6E-06 33.1 1.6 43 20-64 24-67 (67)
297 smart00419 HTH_CRP helix_turn_ 90.4 0.085 1.8E-06 32.0 0.1 42 20-63 7-48 (48)
298 PF14947 HTH_45: Winged helix- 90.3 0.044 9.6E-07 37.5 -1.3 55 10-68 10-64 (77)
299 COG1959 Predicted transcriptio 90.2 0.1 2.2E-06 40.7 0.4 48 20-67 24-72 (150)
300 PF01022 HTH_5: Bacterial regu 90.2 0.035 7.6E-07 34.1 -1.8 41 7-49 3-43 (47)
301 COG1565 Uncharacterized conser 90.1 0.88 1.9E-05 40.4 6.1 63 81-150 50-121 (370)
302 PF06962 rRNA_methylase: Putat 90.0 1.3 2.8E-05 34.0 6.3 78 140-222 1-99 (140)
303 cd08283 FDH_like_1 Glutathione 89.9 2.1 4.6E-05 38.4 8.8 100 112-216 182-307 (386)
304 PF13412 HTH_24: Winged helix- 89.7 0.058 1.2E-06 33.1 -1.1 40 7-47 4-43 (48)
305 KOG0822 Protein kinase inhibit 89.1 3.2 6.9E-05 38.8 9.0 92 115-210 368-473 (649)
306 PF13463 HTH_27: Winged helix 88.9 0.12 2.6E-06 34.0 -0.0 59 8-66 5-68 (68)
307 PF11599 AviRa: RRNA methyltra 88.4 2.4 5.2E-05 35.0 7.1 100 113-215 50-214 (246)
308 smart00347 HTH_MARR helix_turn 88.1 0.27 5.8E-06 34.7 1.3 62 7-69 11-77 (101)
309 PF10354 DUF2431: Domain of un 88.0 3.1 6.8E-05 32.9 7.5 94 121-217 3-127 (166)
310 KOG1099 SAM-dependent methyltr 87.8 1.1 2.4E-05 37.3 4.8 94 111-212 38-160 (294)
311 PF12840 HTH_20: Helix-turn-he 87.7 0.065 1.4E-06 34.8 -1.9 47 3-50 7-53 (61)
312 PF02636 Methyltransf_28: Puta 87.6 1.5 3.3E-05 37.1 5.9 33 115-147 19-59 (252)
313 PF13404 HTH_AsnC-type: AsnC-t 87.4 0.17 3.7E-06 30.3 -0.0 32 7-39 4-35 (42)
314 TIGR02010 IscR iron-sulfur clu 87.1 0.21 4.5E-06 38.1 0.3 47 20-66 24-71 (135)
315 PF05206 TRM13: Methyltransfer 86.7 1.2 2.7E-05 37.9 4.8 35 112-146 16-55 (259)
316 PF02153 PDH: Prephenate dehyd 85.8 1.5 3.3E-05 37.2 5.0 70 128-204 1-71 (258)
317 PF02796 HTH_7: Helix-turn-hel 85.5 0.26 5.7E-06 29.8 0.1 30 11-43 14-43 (45)
318 cd00315 Cyt_C5_DNA_methylase C 85.2 4 8.7E-05 35.0 7.3 99 117-220 2-115 (275)
319 TIGR00738 rrf2_super rrf2 fami 84.8 0.32 7E-06 36.6 0.3 48 20-67 24-72 (132)
320 TIGR02337 HpaR homoprotocatech 84.7 0.42 9.2E-06 35.3 0.9 63 7-70 29-96 (118)
321 COG1063 Tdh Threonine dehydrog 84.6 6 0.00013 35.2 8.4 95 116-221 170-275 (350)
322 PRK10141 DNA-binding transcrip 84.4 0.21 4.5E-06 37.2 -0.8 62 2-64 12-75 (117)
323 COG4742 Predicted transcriptio 84.4 0.52 1.1E-05 40.0 1.4 63 5-71 12-74 (260)
324 TIGR00122 birA_repr_reg BirA b 84.2 0.24 5.2E-06 32.9 -0.6 56 8-66 2-57 (69)
325 PF08279 HTH_11: HTH domain; 84.1 0.24 5.1E-06 31.2 -0.6 38 10-47 4-41 (55)
326 PF12324 HTH_15: Helix-turn-he 84.1 0.27 5.8E-06 33.5 -0.4 36 11-47 29-64 (77)
327 KOG2539 Mitochondrial/chloropl 84.0 0.88 1.9E-05 41.6 2.7 102 115-219 201-319 (491)
328 PF01978 TrmB: Sugar-specific 83.7 0.081 1.8E-06 35.1 -3.0 44 7-51 9-52 (68)
329 COG5379 BtaA S-adenosylmethion 83.5 1.6 3.6E-05 37.6 4.0 65 147-214 296-365 (414)
330 PRK11920 rirA iron-responsive 83.3 0.41 9E-06 37.4 0.3 47 20-66 23-70 (153)
331 TIGR01321 TrpR trp operon repr 83.0 0.78 1.7E-05 32.6 1.6 40 5-46 41-80 (94)
332 PF04703 FaeA: FaeA-like prote 83.0 0.16 3.5E-06 33.2 -1.7 40 10-49 4-43 (62)
333 TIGR02702 SufR_cyano iron-sulf 82.6 0.42 9.1E-06 39.1 0.1 63 8-71 3-72 (203)
334 PRK03902 manganese transport t 82.3 0.63 1.4E-05 35.7 1.0 54 14-69 16-69 (142)
335 TIGR01884 cas_HTH CRISPR locus 82.2 0.33 7.2E-06 39.7 -0.6 57 8-65 145-202 (203)
336 PF05711 TylF: Macrocin-O-meth 82.1 2.1 4.5E-05 36.3 4.1 100 115-218 75-215 (248)
337 smart00418 HTH_ARSR helix_turn 81.9 0.68 1.5E-05 29.4 0.9 52 11-64 2-55 (66)
338 PF04445 SAM_MT: Putative SAM- 81.4 2.2 4.7E-05 35.8 3.9 79 102-184 63-162 (234)
339 PRK01381 Trp operon repressor; 81.1 1.1 2.5E-05 32.0 1.9 40 5-46 41-80 (99)
340 PRK11014 transcriptional repre 80.5 0.56 1.2E-05 36.0 0.1 47 20-66 24-71 (141)
341 KOG0024 Sorbitol dehydrogenase 80.4 19 0.00042 31.7 9.4 101 112-223 167-281 (354)
342 TIGR02944 suf_reg_Xantho FeS a 79.8 0.53 1.1E-05 35.5 -0.2 45 20-64 24-69 (130)
343 PF00165 HTH_AraC: Bacterial r 79.7 0.51 1.1E-05 27.9 -0.2 26 20-45 7-32 (42)
344 KOG2352 Predicted spermine/spe 79.5 3.1 6.7E-05 38.4 4.5 134 83-224 268-424 (482)
345 PF08220 HTH_DeoR: DeoR-like h 79.5 0.42 9.1E-06 30.6 -0.7 39 10-49 4-42 (57)
346 PF09012 FeoC: FeoC like trans 79.1 0.39 8.6E-06 31.9 -1.0 38 11-49 5-42 (69)
347 PF03721 UDPG_MGDP_dh_N: UDP-g 78.9 4.2 9.1E-05 32.7 4.8 101 117-222 2-126 (185)
348 PHA00738 putative HTH transcri 78.4 0.52 1.1E-05 34.2 -0.5 59 7-66 13-73 (108)
349 COG4189 Predicted transcriptio 78.3 1.4 3.1E-05 36.6 1.8 38 2-40 19-56 (308)
350 KOG2651 rRNA adenine N-6-methy 78.2 3.7 8.1E-05 36.8 4.5 37 112-149 151-187 (476)
351 PRK07417 arogenate dehydrogena 78.1 13 0.00028 31.8 7.9 79 117-204 2-83 (279)
352 PRK11050 manganese transport r 77.6 0.92 2E-05 35.3 0.6 57 11-69 42-98 (152)
353 COG1321 TroR Mn-dependent tran 77.4 1.2 2.6E-05 34.8 1.2 49 19-68 22-70 (154)
354 PF00107 ADH_zinc_N: Zinc-bind 77.2 5.6 0.00012 29.3 4.8 83 124-218 1-92 (130)
355 PF02254 TrkA_N: TrkA-N domain 76.9 4.9 0.00011 29.1 4.3 82 123-214 4-95 (116)
356 COG0287 TyrA Prephenate dehydr 76.9 7.8 0.00017 33.4 6.1 81 117-204 5-90 (279)
357 cd00090 HTH_ARSR Arsenical Res 76.7 0.61 1.3E-05 30.6 -0.6 56 7-64 8-65 (78)
358 COG3355 Predicted transcriptio 76.5 0.93 2E-05 34.0 0.3 41 10-51 31-72 (126)
359 smart00344 HTH_ASNC helix_turn 76.2 0.7 1.5E-05 33.4 -0.4 43 7-50 4-46 (108)
360 PRK07502 cyclohexadienyl dehyd 75.8 18 0.0004 31.3 8.4 84 115-204 6-92 (307)
361 COG1568 Predicted methyltransf 75.5 2.4 5.2E-05 36.4 2.5 176 22-204 35-249 (354)
362 TIGR00675 dcm DNA-methyltransf 75.4 8.2 0.00018 33.8 6.0 97 118-219 1-111 (315)
363 PF03686 UPF0146: Uncharacteri 75.4 12 0.00027 28.1 6.0 86 115-216 14-103 (127)
364 PRK11512 DNA-binding transcrip 75.3 1.1 2.4E-05 34.3 0.5 62 8-70 42-108 (144)
365 PF07381 DUF1495: Winged helix 75.2 1.8 4E-05 30.5 1.5 64 6-69 9-86 (90)
366 smart00420 HTH_DEOR helix_turn 74.9 0.65 1.4E-05 28.4 -0.8 38 11-49 5-42 (53)
367 PF01210 NAD_Gly3P_dh_N: NAD-d 74.8 6.5 0.00014 30.5 4.8 82 117-204 1-95 (157)
368 PRK01747 mnmC bifunctional tRN 74.4 5.8 0.00013 38.5 5.3 92 114-212 57-203 (662)
369 PRK13239 alkylmercury lyase; P 74.3 1.6 3.4E-05 35.8 1.1 41 7-48 23-63 (206)
370 PRK09424 pntA NAD(P) transhydr 74.3 18 0.00039 34.0 8.2 96 114-216 164-286 (509)
371 PF12802 MarR_2: MarR family; 73.1 0.42 9.1E-06 30.7 -2.1 45 7-51 6-51 (62)
372 PRK03659 glutathione-regulated 72.7 19 0.00041 34.6 8.2 85 117-213 402-496 (601)
373 PF03514 GRAS: GRAS domain fam 72.6 22 0.00049 32.0 8.2 113 101-220 99-248 (374)
374 PF13601 HTH_34: Winged helix 72.4 0.3 6.4E-06 33.7 -3.0 60 7-67 1-66 (80)
375 cd08237 ribitol-5-phosphate_DH 71.9 39 0.00085 29.6 9.6 93 113-216 162-257 (341)
376 PF09929 DUF2161: Uncharacteri 71.7 1.8 3.8E-05 32.0 0.8 53 10-67 63-115 (118)
377 PRK03573 transcriptional regul 71.6 2 4.4E-05 32.7 1.2 61 11-71 36-101 (144)
378 PRK11169 leucine-responsive tr 71.2 1.8 3.9E-05 34.1 0.8 40 6-46 14-53 (164)
379 COG0541 Ffh Signal recognition 71.0 13 0.00029 34.0 6.3 105 115-222 100-228 (451)
380 PF01047 MarR: MarR family; I 70.8 0.36 7.8E-06 30.8 -2.8 44 7-51 4-47 (59)
381 cd01842 SGNH_hydrolase_like_5 70.7 8.5 0.00018 30.8 4.4 42 173-217 50-101 (183)
382 PRK06266 transcription initiat 70.2 1.7 3.7E-05 34.8 0.4 41 10-51 26-66 (178)
383 COG4190 Predicted transcriptio 69.9 0.89 1.9E-05 34.2 -1.1 44 7-51 65-108 (144)
384 PLN02353 probable UDP-glucose 69.5 42 0.00091 31.3 9.4 101 117-222 3-133 (473)
385 PHA01634 hypothetical protein 69.3 18 0.00039 27.5 5.6 40 114-155 28-69 (156)
386 PF00356 LacI: Bacterial regul 69.2 1.5 3.3E-05 26.7 -0.0 23 23-45 1-23 (46)
387 PF07279 DUF1442: Protein of u 68.5 67 0.0015 26.6 10.5 97 114-220 41-153 (218)
388 PLN02853 Probable phenylalanyl 68.0 1.4 3.1E-05 40.8 -0.5 69 5-74 2-73 (492)
389 PRK05562 precorrin-2 dehydroge 68.0 47 0.001 27.7 8.5 63 114-180 24-92 (223)
390 KOG1098 Putative SAM-dependent 67.8 8.1 0.00018 36.9 4.3 46 103-149 34-80 (780)
391 PHA02591 hypothetical protein; 67.3 2.2 4.7E-05 29.0 0.4 31 11-43 51-81 (83)
392 PRK11179 DNA-binding transcrip 66.9 2.4 5.1E-05 33.0 0.6 40 7-47 10-49 (153)
393 PRK09489 rsmC 16S ribosomal RN 66.8 51 0.0011 29.3 9.1 103 102-217 9-114 (342)
394 cd08230 glucose_DH Glucose deh 66.4 79 0.0017 27.7 10.4 93 114-218 172-272 (355)
395 PRK04172 pheS phenylalanyl-tRN 66.4 1.8 3.9E-05 40.4 -0.2 68 6-74 6-75 (489)
396 COG2933 Predicted SAM-dependen 66.4 13 0.00029 31.8 4.9 55 112-169 209-263 (358)
397 PF01555 N6_N4_Mtase: DNA meth 66.3 8.9 0.00019 31.1 4.0 40 113-154 190-230 (231)
398 PF06163 DUF977: Bacterial pro 66.0 2 4.2E-05 32.2 -0.0 44 5-49 11-54 (127)
399 PRK08507 prephenate dehydrogen 65.7 28 0.0006 29.7 7.1 79 117-204 2-83 (275)
400 PF01325 Fe_dep_repress: Iron 65.5 0.95 2.1E-05 29.3 -1.6 32 19-50 20-51 (60)
401 TIGR01610 phage_O_Nterm phage 64.1 3 6.5E-05 29.6 0.7 44 20-63 46-89 (95)
402 TIGR02844 spore_III_D sporulat 63.9 3.2 6.9E-05 28.6 0.7 33 10-44 10-42 (80)
403 PTZ00326 phenylalanyl-tRNA syn 63.8 2 4.4E-05 39.9 -0.3 70 5-74 5-76 (494)
404 PRK03562 glutathione-regulated 63.8 32 0.00069 33.3 7.8 86 116-213 401-496 (621)
405 COG2345 Predicted transcriptio 63.7 2.6 5.6E-05 34.9 0.3 58 10-68 15-79 (218)
406 PF01638 HxlR: HxlR-like helix 63.2 1.5 3.3E-05 30.7 -1.0 58 11-70 10-73 (90)
407 TIGR01889 Staph_reg_Sar staphy 63.1 3.4 7.4E-05 30.0 0.8 62 8-69 27-96 (109)
408 KOG2920 Predicted methyltransf 63.1 8.7 0.00019 33.0 3.3 37 113-150 115-152 (282)
409 PF07991 IlvN: Acetohydroxy ac 62.5 16 0.00036 28.8 4.5 90 115-216 4-96 (165)
410 PF00325 Crp: Bacterial regula 62.3 1.5 3.3E-05 24.5 -0.9 26 21-46 2-27 (32)
411 TIGR00373 conserved hypothetic 62.1 2.9 6.3E-05 32.8 0.3 42 9-51 17-58 (158)
412 PF05059 Orbi_VP4: Orbivirus V 61.8 11 0.00024 35.5 3.9 89 102-219 178-269 (644)
413 smart00529 HTH_DTXR Helix-turn 61.7 3.4 7.4E-05 29.0 0.6 45 24-69 2-46 (96)
414 PRK14165 winged helix-turn-hel 61.2 4.5 9.7E-05 33.5 1.3 57 12-69 13-71 (217)
415 PF10668 Phage_terminase: Phag 61.0 4.4 9.5E-05 26.3 0.9 23 19-41 20-42 (60)
416 KOG1596 Fibrillarin and relate 60.8 87 0.0019 26.6 8.6 104 112-224 154-270 (317)
417 COG2512 Predicted membrane-ass 60.8 1.7 3.8E-05 36.9 -1.2 45 8-52 197-241 (258)
418 COG1748 LYS9 Saccharopine dehy 60.6 65 0.0014 29.3 8.6 65 116-180 2-75 (389)
419 PRK06719 precorrin-2 dehydroge 60.3 79 0.0017 24.5 8.9 63 114-180 12-77 (157)
420 smart00859 Semialdhyde_dh Semi 60.2 46 0.001 24.2 6.6 76 124-204 10-91 (122)
421 TIGR01470 cysG_Nterm siroheme 59.3 50 0.0011 27.0 7.2 63 115-180 9-76 (205)
422 cd05290 LDH_3 A subgroup of L- 59.2 66 0.0014 28.1 8.3 98 118-216 2-120 (307)
423 PTZ00357 methyltransferase; Pr 58.9 26 0.00057 34.3 5.9 87 116-203 702-822 (1072)
424 TIGR01202 bchC 2-desacetyl-2-h 58.1 1.1E+02 0.0024 26.3 9.6 85 115-216 145-232 (308)
425 PF08280 HTH_Mga: M protein tr 57.8 1.4 3.1E-05 28.3 -1.8 39 7-46 6-44 (59)
426 PRK11064 wecC UDP-N-acetyl-D-m 57.4 90 0.002 28.5 9.2 96 116-220 4-123 (415)
427 COG1378 Predicted transcriptio 57.1 6.4 0.00014 33.3 1.5 50 20-69 29-79 (247)
428 cd01338 MDH_choloroplast_like 57.1 86 0.0019 27.6 8.7 99 115-215 2-128 (322)
429 COG3510 CmcI Cephalosporin hyd 57.0 1.1E+02 0.0024 25.1 8.3 104 113-222 68-187 (237)
430 PTZ00117 malate dehydrogenase; 56.7 1.2E+02 0.0025 26.6 9.5 66 115-181 5-81 (319)
431 PF13443 HTH_26: Cro/C1-type H 56.6 2.3 5E-05 27.3 -1.0 31 12-44 3-33 (63)
432 smart00345 HTH_GNTR helix_turn 56.1 3.7 7.9E-05 25.6 -0.0 32 20-51 18-50 (60)
433 PRK10669 putative cation:proto 55.9 65 0.0014 30.6 8.3 85 117-213 419-513 (558)
434 cd07153 Fur_like Ferric uptake 55.6 3.6 7.9E-05 30.0 -0.1 44 8-51 3-51 (116)
435 TIGR02822 adh_fam_2 zinc-bindi 55.2 1.2E+02 0.0026 26.4 9.4 89 112-216 163-255 (329)
436 cd08254 hydroxyacyl_CoA_DH 6-h 54.8 1.1E+02 0.0024 26.2 9.1 93 112-216 163-264 (338)
437 KOG1269 SAM-dependent methyltr 54.7 27 0.00058 31.4 5.1 106 114-224 180-322 (364)
438 PF10007 DUF2250: Uncharacteri 54.4 4 8.7E-05 28.9 -0.1 44 7-51 8-51 (92)
439 PF01371 Trp_repressor: Trp re 54.3 5.7 0.00012 27.8 0.7 38 5-45 35-73 (87)
440 COG1522 Lrp Transcriptional re 54.0 3.6 7.8E-05 31.6 -0.4 43 6-49 8-50 (154)
441 PRK10870 transcriptional repre 53.9 7.7 0.00017 30.9 1.5 63 9-71 58-126 (176)
442 PF01418 HTH_6: Helix-turn-hel 53.9 3.4 7.4E-05 28.0 -0.5 30 20-49 33-62 (77)
443 COG2081 Predicted flavoprotein 53.8 23 0.0005 32.1 4.5 87 116-203 4-96 (408)
444 TIGR00872 gnd_rel 6-phosphoglu 53.8 45 0.00097 28.8 6.4 83 118-214 3-91 (298)
445 PF13518 HTH_28: Helix-turn-he 53.6 4.1 9E-05 24.8 -0.1 25 22-46 13-37 (52)
446 COG4565 CitB Response regulato 53.5 4.3 9.4E-05 33.4 -0.0 41 11-51 163-203 (224)
447 PRK00066 ldh L-lactate dehydro 53.5 1.2E+02 0.0025 26.6 9.0 101 114-215 5-122 (315)
448 PF08461 HTH_12: Ribonuclease 53.2 7.2 0.00016 25.7 1.0 56 11-67 3-63 (66)
449 PRK08293 3-hydroxybutyryl-CoA 53.1 81 0.0018 27.0 7.9 85 116-204 4-112 (287)
450 PF13542 HTH_Tnp_ISL3: Helix-t 52.8 4.6 0.0001 24.8 0.0 35 7-44 16-50 (52)
451 PRK12683 transcriptional regul 52.7 54 0.0012 28.2 6.8 123 8-153 5-138 (309)
452 COG0286 HsdM Type I restrictio 52.6 1E+02 0.0022 28.9 8.9 98 113-213 185-324 (489)
453 PRK11074 putative DNA-binding 52.6 25 0.00055 30.0 4.6 60 8-70 6-66 (300)
454 PRK06474 hypothetical protein; 52.6 3.9 8.5E-05 32.7 -0.4 49 3-51 8-57 (178)
455 PF13384 HTH_23: Homeodomain-l 52.5 4.3 9.4E-05 24.7 -0.1 35 8-45 7-41 (50)
456 TIGR01771 L-LDH-NAD L-lactate 52.1 62 0.0014 28.1 7.0 94 121-215 2-113 (299)
457 COG1088 RfbB dTDP-D-glucose 4, 51.8 26 0.00056 30.6 4.4 49 121-169 5-62 (340)
458 COG1255 Uncharacterized protei 51.6 99 0.0021 23.0 9.4 79 114-203 13-95 (129)
459 PF07789 DUF1627: Protein of u 51.5 6.7 0.00015 30.2 0.7 28 20-47 5-32 (155)
460 cd05213 NAD_bind_Glutamyl_tRNA 51.4 1.1E+02 0.0024 26.7 8.5 96 114-222 177-278 (311)
461 PF05772 NinB: NinB protein; 51.4 27 0.00058 26.4 3.9 27 232-258 46-72 (127)
462 PF13936 HTH_38: Helix-turn-he 51.2 4.2 9E-05 24.4 -0.3 23 20-42 19-41 (44)
463 PF13545 HTH_Crp_2: Crp-like h 51.1 3.2 7E-05 27.6 -1.0 42 20-63 27-68 (76)
464 PRK08818 prephenate dehydrogen 50.9 66 0.0014 29.0 7.1 70 116-204 5-80 (370)
465 PLN00112 malate dehydrogenase 50.8 1.2E+02 0.0025 28.2 8.7 104 112-216 97-227 (444)
466 TIGR03826 YvyF flagellar opero 50.7 6 0.00013 30.3 0.3 36 11-46 35-71 (137)
467 PF02005 TRM: N2,N2-dimethylgu 50.7 68 0.0015 29.0 7.1 95 113-216 48-155 (377)
468 PRK15001 SAM-dependent 23S rib 50.4 1.3E+02 0.0028 27.2 8.9 89 117-218 47-145 (378)
469 TIGR01763 MalateDH_bact malate 50.2 1.1E+02 0.0024 26.6 8.2 97 117-215 3-118 (305)
470 PF00145 DNA_methylase: C-5 cy 50.1 38 0.00082 29.2 5.4 95 117-221 2-115 (335)
471 TIGR00498 lexA SOS regulatory 49.8 6.4 0.00014 31.9 0.4 53 6-60 6-63 (199)
472 PRK07680 late competence prote 49.8 78 0.0017 26.8 7.2 81 118-204 3-88 (273)
473 PTZ00082 L-lactate dehydrogena 49.4 1.3E+02 0.0029 26.4 8.7 64 116-180 7-81 (321)
474 smart00342 HTH_ARAC helix_turn 49.3 6.3 0.00014 26.2 0.3 25 21-45 1-25 (84)
475 PRK10219 DNA-binding transcrip 49.1 6.7 0.00014 28.2 0.4 26 20-45 20-45 (107)
476 PF05050 Methyltransf_21: Meth 49.0 22 0.00048 27.1 3.4 32 120-151 1-37 (167)
477 PRK15431 ferrous iron transpor 48.6 5.8 0.00013 27.1 0.0 38 11-49 7-44 (78)
478 cd05291 HicDH_like L-2-hydroxy 48.5 1.7E+02 0.0038 25.3 9.3 98 117-215 2-117 (306)
479 PRK06545 prephenate dehydrogen 48.4 84 0.0018 28.0 7.4 28 172-204 59-87 (359)
480 TIGR03201 dearomat_had 6-hydro 48.3 1.9E+02 0.0041 25.3 10.1 94 112-217 164-274 (349)
481 KOG1227 Putative methyltransfe 48.2 13 0.00028 32.5 2.0 97 115-221 195-303 (351)
482 PRK04214 rbn ribonuclease BN/u 48.2 7.9 0.00017 35.3 0.8 46 19-65 308-353 (412)
483 cd07377 WHTH_GntR Winged helix 48.1 10 0.00023 24.0 1.2 30 22-51 26-55 (66)
484 PRK11524 putative methyltransf 47.8 30 0.00064 29.8 4.3 41 113-155 207-248 (284)
485 COG3129 Predicted SAM-dependen 47.4 23 0.00051 29.7 3.3 74 114-187 78-167 (292)
486 PRK09775 putative DNA-binding 47.3 8.2 0.00018 35.6 0.7 33 11-45 5-37 (442)
487 PRK11511 DNA-binding transcrip 47.0 7.4 0.00016 29.1 0.4 26 20-45 24-49 (127)
488 PF03486 HI0933_like: HI0933-l 47.0 18 0.00039 33.0 2.9 81 117-198 2-89 (409)
489 PF10237 N6-adenineMlase: Prob 46.8 1.4E+02 0.0031 23.4 10.8 96 113-218 24-126 (162)
490 PF04539 Sigma70_r3: Sigma-70 46.7 5.3 0.00012 26.8 -0.4 27 20-46 19-45 (78)
491 PRK05638 threonine synthase; V 46.3 8.6 0.00019 35.4 0.7 61 7-69 372-437 (442)
492 PRK05225 ketol-acid reductoiso 46.2 24 0.00052 32.7 3.5 91 114-216 35-132 (487)
493 COG0604 Qor NADPH:quinone redu 46.1 99 0.0021 27.2 7.4 95 112-218 140-244 (326)
494 PF04218 CENP-B_N: CENP-B N-te 46.1 6.2 0.00014 24.7 -0.2 34 7-43 11-44 (53)
495 cd05188 MDR Medium chain reduc 46.0 1.6E+02 0.0035 23.9 11.3 93 113-217 133-234 (271)
496 PRK11908 NAD-dependent epimera 45.9 1.3E+02 0.0029 26.2 8.3 60 117-178 3-73 (347)
497 PF01381 HTH_3: Helix-turn-hel 45.8 7.1 0.00015 24.1 0.1 25 20-44 8-32 (55)
498 PRK12921 2-dehydropantoate 2-r 45.4 1.5E+02 0.0033 25.2 8.4 88 117-214 2-101 (305)
499 PRK07530 3-hydroxybutyryl-CoA 45.2 1.9E+02 0.004 24.7 8.9 90 116-216 5-119 (292)
500 cd00300 LDH_like L-lactate deh 45.1 1.5E+02 0.0032 25.7 8.2 94 121-215 4-115 (300)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=1.3e-40 Score=280.91 Aligned_cols=196 Identities=37% Similarity=0.686 Sum_probs=171.1
Q ss_pred CCceeecCHhhhhhhcCCC-CC----------------------------------------chhhcCchHHHHHHHHHH
Q 041250 56 EEQGYVLTNASKLLLKDNP-LS----------------------------------------EYAGDESKLNNFFNEAMA 94 (259)
Q Consensus 56 ~~~~y~~t~~~~~l~~~~~-~~----------------------------------------~~l~~~~~~~~~f~~~m~ 94 (259)
+++.|+||+.|+.|+.+++ .+ +|+.++|+..+.|..+|.
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 5789999999997776654 11 456678899999999999
Q ss_pred hcchhhh-HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCC
Q 041250 95 SDARLAT-SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISP 173 (259)
Q Consensus 95 ~~~~~~~-~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~ 173 (259)
..+.... +.+...++ +++..+|||||||+|.++.+++++||+++++++|+|++++.+++ .+||++++||||+++|.
T Consensus 82 ~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCCSS
T ss_pred hhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhhcc
Confidence 9888777 78888889 88889999999999999999999999999999999999999996 99999999999998888
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCC--cEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKK--RKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~g--g~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e 251 (259)
+|+|+++++||+|+|+++++||++++++|+| | |+|+|+|+++++++..+.......++|++||++++|++||.+|
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e 235 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEE 235 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHH
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999999999999999999999999 8 9999999999999887643223368999999999999999999
Q ss_pred HHHHHh
Q 041250 252 WAKIFA 257 (259)
Q Consensus 252 ~~~ll~ 257 (259)
|++|++
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999985
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=1.3e-37 Score=271.34 Aligned_cols=245 Identities=20% Similarity=0.320 Sum_probs=190.3
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhc-CCCCC---
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLK-DNPLS--- 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~-~~~~~--- 76 (259)
++|++|+++||||+|.+ +|.|++|||+++|++++.+.+||+++..++++ +.++++|+||+.++.+.. +++.+
T Consensus 5 ~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll--~~~~~~y~~t~~~~~~l~~~~~~~~~~ 80 (306)
T TIGR02716 5 SCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVI--NLEDGKWSLTEFADYMFSPTPKEPNLH 80 (306)
T ss_pred HHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCe--EecCCcEecchhHHhhccCCccchhhh
Confidence 47999999999999987 89999999999999999999999999999886 556789999999984444 33210
Q ss_pred --------------------chhhc---------Cch---HHHHHHHHHH-hcchhhhHHHHHhcccccCCCCeEEEecC
Q 041250 77 --------------------EYAGD---------ESK---LNNFFNEAMA-SDARLATSVMIQKCKNVFEGLNSLVDVGG 123 (259)
Q Consensus 77 --------------------~~l~~---------~~~---~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~~vlDvGg 123 (259)
+.++. .|+ ....|...|. .......+.+++.++ +++..+||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vlDiG~ 158 (306)
T TIGR02716 81 QTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGG 158 (306)
T ss_pred cCchHHHHHHHHHHHHHhHHHHhcCCcccccccCCCCCCHHHHHhHHHHHHhcchhHHHHHHHHcC--CCCCCEEEEeCC
Confidence 11111 111 1123444443 333444566777777 778889999999
Q ss_pred CchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehhhhccCChHHHHHHHH
Q 041250 124 GTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKWILLDWNDEECVKILK 196 (259)
Q Consensus 124 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d~~~~~il~ 196 (259)
|+|.+++.+++++|+++++++|+|.+++.+++ ..+||+++.+|+++ ++|++|+|++++++|+|+++++.++|+
T Consensus 159 G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~ 238 (306)
T TIGR02716 159 GIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCK 238 (306)
T ss_pred chhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHH
Confidence 99999999999999999999999999988765 45799999999997 677799999999999999999999999
Q ss_pred HHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhh----hhhhccCccccCHHHHHHHHhcC
Q 041250 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEM----FMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 197 ~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~----~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+++++|+| ||+++|+|.+.+++... .+ ..+.+. .|+.. -...++.+||++|+++|
T Consensus 239 ~~~~~L~p---gG~l~i~d~~~~~~~~~-~~---~~~~~~~~~~~~~~~-~~~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 239 KAFDAMRS---GGRLLILDMVIDDPENP-NF---DYLSHYILGAGMPFS-VLGFKEQARYKEILESL 297 (306)
T ss_pred HHHHhcCC---CCEEEEEEeccCCCCCc-hh---hHHHHHHHHcccccc-cccCCCHHHHHHHHHHc
Confidence 99999999 99999999988775432 11 122222 12211 11344579999999876
No 3
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=250.94 Aligned_cols=252 Identities=29% Similarity=0.463 Sum_probs=204.0
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcC-----CCccccccceeccccccCCCCC-CCCceeecCHhhhhhhcCCC
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALT-----INLSKTQCFFAQQKLVSSGNNN-DEEQGYVLTNASKLLLKDNP 74 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~-----~~~~~l~~ll~~~~~~~~~~~~-~~~~~y~~t~~~~~l~~~~~ 74 (259)
|+|.+|+||||||+|.+. ++ ..|+|..+- .+|..+.|+|+.+...+++... .....|.++|.++++.++..
T Consensus 21 ~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~~~~~~~~~l~~~~ 97 (342)
T KOG3178|consen 21 MVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYSATPVCKYFLKDSG 97 (342)
T ss_pred HHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecceeeeccchhhhheecCC
Confidence 689999999999999974 22 667776665 4667788999988887654321 11228999999996664332
Q ss_pred -CC----------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccC
Q 041250 75 -LS----------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFE 113 (259)
Q Consensus 75 -~~----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~ 113 (259)
.+ +|...++.....|+++|...+....+.+++.+.. ++
T Consensus 98 ~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~G-f~ 176 (342)
T KOG3178|consen 98 GGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTG-FK 176 (342)
T ss_pred CCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcc-cc
Confidence 11 2223445556788999988888877778888773 78
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHH
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVK 193 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~ 193 (259)
+....||||||.|..+..+...||+++++.+|+|.+++.++...+.|+.+.+|+|...|+.|+|++.|+||||+|++|++
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvk 256 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVK 256 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHH
Confidence 88999999999999999999999999999999999999999742679999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCcEEEEEeeeecC-CCCCchhhhhhhhhhhhhhhcc-CccccCHHHHHHHHhcC
Q 041250 194 ILKKCKEAITRDGKKRKVIIKDMIKEN-RKKDYKSIETQLFFEMFMMVLL-TGTERDEKEWAKIFADS 259 (259)
Q Consensus 194 il~~~~~~L~p~~~gg~lli~e~~~~~-~~~~~~~~~~~~~~d~~m~~~~-~g~~rt~~e~~~ll~~a 259 (259)
+|+|++.+|+| +|+|+|.|.+.|+ +...+........+|+.|++.+ +|++|+.+||+.++.++
T Consensus 257 iLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~ 321 (342)
T KOG3178|consen 257 ILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEE 321 (342)
T ss_pred HHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhh
Confidence 99999999999 9999999999886 3332211234568999999887 69999999999998764
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.75 E-value=3.7e-17 Score=137.76 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=110.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKWI 182 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~v 182 (259)
.+..+|||||||+|.++..+++. +|+.+++++|+ +.+++.|++ ...+++++.+|+.+ +.+.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 45678999999999999999987 47899999999 899988876 24589999999988 6677999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc------------------cCc
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL------------------LTG 244 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~------------------~~g 244 (259)
+|++++++...++++++++|+| ||.+++.|.+.+++....+ .+..+.+... ..-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 9999988888999999999999 9999999988766543211 1222211110 112
Q ss_pred cccCHHHHHHHHhcC
Q 041250 245 TERDEKEWAKIFADS 259 (259)
Q Consensus 245 ~~rt~~e~~~ll~~a 259 (259)
...|.+++++++++|
T Consensus 204 ~~~s~~~~~~~l~~a 218 (239)
T TIGR00740 204 RTDSIETHKARLKNV 218 (239)
T ss_pred CCCCHHHHHHHHHHc
Confidence 467899999999875
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=1.5e-16 Score=132.16 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=95.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL 183 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl 183 (259)
..+.+|||||||||.++..+++..+..+++++|+ +.|++.+++ ....|+|+.+|..+ |+| .||+|.+++.|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3578999999999999999999999999999999 999999987 12339999999999 888 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK 223 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~ 223 (259)
|+.+|- .+.|++++|+|+| ||++++.|+..|+...
T Consensus 130 rnv~d~--~~aL~E~~RVlKp---gG~~~vle~~~p~~~~ 164 (238)
T COG2226 130 RNVTDI--DKALKEMYRVLKP---GGRLLVLEFSKPDNPV 164 (238)
T ss_pred hcCCCH--HHHHHHHHHhhcC---CeEEEEEEcCCCCchh
Confidence 999975 4899999999999 9999999998876644
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.69 E-value=3.2e-16 Score=116.27 Aligned_cols=98 Identities=21% Similarity=0.351 Sum_probs=84.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCC-CC-CC-CCccEEeehh-hh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDM-FK-AI-SPAYAVLLKW-IL 183 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~-~~-~~-~~~D~~~~~~-vl 183 (259)
..+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ ..+|++++.+|+ .. .. ++||+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57899999999999999999999999999999 899988877 469999999999 33 33 3699999999 67
Q ss_pred ccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 184 LDWND-EECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 184 h~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
|++.. ++..++++++++.|+| ||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 75544 6778999999999999 89888865
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=1e-15 Score=129.52 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=94.2
Q ss_pred CCCCeEEEecCCchHHHHHHHH--HCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAK--AFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKWI 182 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~v 182 (259)
.+..+|||||||+|..+..+++ .+|+.+++++|. +.+++.|++ ...+++++.+|+.+ +.+.+|++++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4567999999999999999988 468999999999 999999877 24589999999987 6667999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
+|++++++...++++++++|+| ||.+++.|.+..++.
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~ 171 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDA 171 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcc
Confidence 9999988888999999999999 999999998766544
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.69 E-value=1.3e-15 Score=130.09 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=110.9
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--C
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--P 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~ 173 (259)
...+++.+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ ++| .
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 355666666 7778899999999999999998875 679999999 888888876 34689999999987 665 4
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHH
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA 253 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~ 253 (259)
||+|++..++|+++.++..++|++++++|+| ||++++.+.........+ . .... ++....-...+.++|.
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~ 187 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---E--EFKA--YIKKRKYTLIPIQEYG 187 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---H--HHHH--HHHhcCCCCCCHHHHH
Confidence 9999999988888876778999999999999 999999998765432211 0 0111 1111112346888899
Q ss_pred HHHhcC
Q 041250 254 KIFADS 259 (259)
Q Consensus 254 ~ll~~a 259 (259)
+++++|
T Consensus 188 ~~l~~a 193 (263)
T PTZ00098 188 DLIKSC 193 (263)
T ss_pred HHHHHC
Confidence 888765
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.65 E-value=2e-15 Score=128.75 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=90.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc--------CCCCeEEEeCCCCC-CCC--CccEEe
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK-AIS--PAYAVL 178 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~-~~~--~~D~~~ 178 (259)
.....+|||||||+|.++..+++.. |+.+++++|+ +++++.|++ ..++++++.+|+.+ |++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4557899999999999999998875 6789999999 899988864 13589999999988 766 499999
Q ss_pred ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
+..++|++++. .++|++++++|+| ||++++.|...+..
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~ 188 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQ 188 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCc
Confidence 99999999874 5799999999999 99999999876554
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.65 E-value=7.7e-16 Score=128.82 Aligned_cols=105 Identities=20% Similarity=0.348 Sum_probs=80.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~ 181 (259)
...+.+|||+|||+|.++..+++.. |+.+++++|+ ++|++.|++ ...+|+++.+|..+ |++ .||++++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4556799999999999999999875 6789999999 999999987 34599999999998 777 499999999
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.+|+.+|. .+.|++++|+|+| ||+++|+|+..|..
T Consensus 125 glrn~~d~--~~~l~E~~RVLkP---GG~l~ile~~~p~~ 159 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKP---GGRLVILEFSKPRN 159 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEE---EEEEEEEEEEB-SS
T ss_pred hHHhhCCH--HHHHHHHHHHcCC---CeEEEEeeccCCCC
Confidence 99999985 4799999999999 99999999988765
No 11
>PRK06922 hypothetical protein; Provisional
Probab=99.64 E-value=2.9e-15 Score=139.12 Aligned_cols=141 Identities=18% Similarity=0.248 Sum_probs=109.5
Q ss_pred chhhcCchHHHHHHHHHHhcchhh--hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhc
Q 041250 77 EYAGDESKLNNFFNEAMASDARLA--TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGL 153 (259)
Q Consensus 77 ~~l~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 153 (259)
+++..+++..++|...|....... .......++ +.+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+
T Consensus 381 d~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~A 458 (677)
T PRK06922 381 DFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTL 458 (677)
T ss_pred HHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 556677777788877665432221 122233344 44578999999999999999999999999999999 7788887
Q ss_pred cc----CCCCeEEEeCCCCC-C--CC--CccEEeehhhhccC-----------ChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 154 ES----DLVNLKYVGGDMFK-A--IS--PAYAVLLKWILLDW-----------NDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 154 ~~----~~~ri~~~~~d~~~-~--~~--~~D~~~~~~vlh~~-----------~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
++ ...++.++.+|..+ + ++ .+|+|+++.++|+| ++++..++|++++++|+| ||+++|
T Consensus 459 rarl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GGrLII 535 (677)
T PRK06922 459 KKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GGRIII 535 (677)
T ss_pred HHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---CcEEEE
Confidence 75 23578889999876 3 33 49999999999976 346788999999999999 999999
Q ss_pred EeeeecCCC
Q 041250 214 KDMIKENRK 222 (259)
Q Consensus 214 ~e~~~~~~~ 222 (259)
.|.+.+++.
T Consensus 536 ~D~v~~E~~ 544 (677)
T PRK06922 536 RDGIMTEDK 544 (677)
T ss_pred EeCccCCch
Confidence 998777654
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.62 E-value=2e-14 Score=127.09 Aligned_cols=141 Identities=12% Similarity=0.125 Sum_probs=102.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWI 182 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~v 182 (259)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ ..++++|+.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456799999999999999999988 679999999 788877765 34689999999988 665 5999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCc-hhh-hhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDY-KSI-ETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~-~~~-~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+|+++|. .+++++++++|+| ||+++|.+.......... ... .....++-.......-...+.++|.++++++
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a 269 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL 269 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence 9999874 4899999999999 999999987643322110 000 0011111111111111235789999998875
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.60 E-value=1.3e-14 Score=123.31 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=90.0
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC--CCCccEEe
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA--ISPAYAVL 178 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~~~~D~~~ 178 (259)
..+++.+. .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+. .+.||+|+
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--cCCcEEEcChhhCCCCCCceEEE
Confidence 45677776 66678999999999999999999999999999999 899988874 3689999998762 23699999
Q ss_pred ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
++.++|+.++. .+++++++++|+| ||++++..
T Consensus 95 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVPEH--ADLLVRWVDELAP---GSWIAVQV 126 (255)
T ss_pred EehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEc
Confidence 99999998864 5799999999999 99988864
No 14
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.60 E-value=3.1e-14 Score=117.06 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=108.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCC------CeEEEeec-hHHHhhccc--------CCCCeEEEeCCCCC-CCC--Cc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPK------LECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK-AIS--PA 174 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~-~~~--~~ 174 (259)
....++|||+||+|.++..+.+..+. .+++++|+ |+++..+++ ...++.|+++|..+ |+| .+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 44589999999999999999998777 68999999 999988776 23569999999999 888 49
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchh------------hh--hhhhhhhhhhh
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKS------------IE--TQLFFEMFMMV 240 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~------------~~--~~~~~d~~m~~ 240 (259)
|.|.+..-+.+|++- .+.|++++|+||| ||++.+.|+..-+...-..+ .+ ..-.....+|+
T Consensus 179 D~yTiafGIRN~th~--~k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLv 253 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHI--QKALREAYRVLKP---GGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLV 253 (296)
T ss_pred eeEEEecceecCCCH--HHHHHHHHHhcCC---CcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHH
Confidence 999999999999985 4899999999999 99999999865543111000 00 01122233444
Q ss_pred ccCccccCHHHHHHHHhcC
Q 041250 241 LLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 241 ~~~g~~rt~~e~~~ll~~a 259 (259)
..=.+..+.+|++.+.++|
T Consensus 254 eSI~rfp~qe~f~~mieda 272 (296)
T KOG1540|consen 254 ESIRRFPPQEEFASMIEDA 272 (296)
T ss_pred hhhhcCCCHHHHHHHHHHc
Confidence 4434567788898888875
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=1.5e-14 Score=118.32 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=93.4
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS- 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~- 172 (259)
.+.+++.++ .....+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ...++++...|+.+ +++
T Consensus 19 ~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 19 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred hHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 356677776 555689999999999999999986 568999999 888887775 33568899999987 444
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
.||+|++..++|++++++...++++++++|+| ||++++++.+..+
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~ 139 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTA 139 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCC
Confidence 59999999999999988889999999999999 9998777665443
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.59 E-value=3.5e-14 Score=131.12 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=108.9
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--C
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--P 173 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~ 173 (259)
..+++.+. +....+|||||||+|..+..+++.+ +.+++++|+ +.+++.|++ ...+++|+.+|+++ ++| .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 34555555 5667899999999999999998876 779999999 788888765 34689999999988 555 4
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHH
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA 253 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~ 253 (259)
||+|++..+++++++. .+++++++++|+| ||++++.++........+ ... .. +...+...++.+++.
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~---~~--~~~~g~~~~~~~~~~ 399 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFA---EY--IKQRGYDLHDVQAYG 399 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHH---HH--HHhcCCCCCCHHHHH
Confidence 9999999999999874 4899999999999 999999998765433221 111 11 111244567888999
Q ss_pred HHHhcC
Q 041250 254 KIFADS 259 (259)
Q Consensus 254 ~ll~~a 259 (259)
+++++|
T Consensus 400 ~~l~~a 405 (475)
T PLN02336 400 QMLKDA 405 (475)
T ss_pred HHHHHC
Confidence 988765
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=2.4e-14 Score=119.85 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=91.6
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-- 172 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-- 172 (259)
.++..++ .....+|||+|||+|.++..+++.. |+.+++++|+ +.+++.+++ ..++++++.+|..+ +++
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3455555 5667899999999999999999885 7789999999 888887775 34689999999987 555
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
.+|+|++..++|++++. .++|+++.+.|+| ||++++.+...+
T Consensus 114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~ 155 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQP 155 (231)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCC
Confidence 49999999999988775 4799999999999 999999887543
No 18
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.58 E-value=4.5e-14 Score=121.19 Aligned_cols=137 Identities=12% Similarity=0.234 Sum_probs=106.6
Q ss_pred cCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~ 181 (259)
+....+|||||||+|..+..+++. .|+.+++++|+ +.+++.|++ ..+++++..+|+.+ +++ .||+|+...
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 556789999999999998887776 46678999999 889988876 34689999999987 655 599999999
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
++|.+++. .+++++++++|+| ||++++.+.....+... ....+..++..+.+..++.++|.++++++
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~l~~a 221 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPE------EIRNDAELYAGCVAGALQEEEYLAMLAEA 221 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCH------HHHHhHHHHhccccCCCCHHHHHHHHHHC
Confidence 99988774 4799999999999 99999999876442211 12233444434456677889999998764
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=2.2e-14 Score=112.49 Aligned_cols=99 Identities=21% Similarity=0.326 Sum_probs=87.0
Q ss_pred CCCeEEEecCCchHHHHHHH-HHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC-CccEEeehhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIA-KAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-PAYAVLLKWI 182 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-~~D~~~~~~v 182 (259)
...+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.|++ ..++++|+.+|+.+ + ++ .||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 46799999999999999999 5688999999999 999998887 45699999999999 5 43 6999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+|++++.. .+++++.+.|++ +|.+++.+..
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPN 112 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEE
T ss_pred hhhccCHH--HHHHHHHHHcCC---CcEEEEEECC
Confidence 99998864 789999999999 8999988887
No 20
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.57 E-value=1.8e-14 Score=103.09 Aligned_cols=89 Identities=20% Similarity=0.280 Sum_probs=77.2
Q ss_pred EEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHH
Q 041250 119 VDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECV 192 (259)
Q Consensus 119 lDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~ 192 (259)
||+|||+|..+..+++. +..+++++|. +++++.+++ ...++++..+|+.+ +++ .||+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999999 8889999999 788888887 55677899999988 766 49999999999999 4467
Q ss_pred HHHHHHHHhcccCCCCcEEEE
Q 041250 193 KILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 193 ~il~~~~~~L~p~~~gg~lli 213 (259)
+++++++++|+| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 999999999999 898875
No 21
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=4.8e-14 Score=120.04 Aligned_cols=107 Identities=15% Similarity=0.260 Sum_probs=92.4
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCC--CCccEE
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAI--SPAYAV 177 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~--~~~D~~ 177 (259)
...+++.++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++...+++++.+|+.+.. .+||+|
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 455677776 66778999999999999999999999999999999 8999999876678999999997622 269999
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+++.++|..++. .+++++++++|+| ||++++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQ 129 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcCC---CcEEEEE
Confidence 999999988764 4799999999999 8988775
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.57 E-value=3.4e-14 Score=124.55 Aligned_cols=129 Identities=22% Similarity=0.284 Sum_probs=101.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCC
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWN 187 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~ 187 (259)
...+|||||||+|.++..+++.+|..+++++|. +.+++.+++ ...+++++.+|+.+ +++ .||+|++..++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999988889999999 888888876 34689999999987 554 499999999999999
Q ss_pred hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 188 d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+.+ ++|++++++|+| ||++++.+.+.+..... ....+..+ ...+.+|+.+++++|
T Consensus 193 d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~~------r~~~~~~~------~~~t~eEl~~lL~~a 247 (340)
T PLN02490 193 DPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWLS------RFFADVWM------LFPKEEEYIEWFTKA 247 (340)
T ss_pred CHH--HHHHHHHHhcCC---CcEEEEEEecCcchhHH------HHhhhhhc------cCCCHHHHHHHHHHC
Confidence 864 689999999999 99999887654321110 11122222 126789999999875
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.55 E-value=1e-13 Score=115.46 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=85.7
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccC
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDW 186 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~ 186 (259)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++..|+.+ +.+ .||+|+...++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 777777765 35789999999976 555 59999999999998
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
++. ..+|+++++.|+| ||++++.+...
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~ 107 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIA 107 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEccc
Confidence 774 5899999999999 99999998754
No 24
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.53 E-value=9.8e-14 Score=114.03 Aligned_cols=104 Identities=16% Similarity=0.280 Sum_probs=90.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC--CccEEeehhhhccCCh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PAYAVLLKWILLDWND 188 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~~~d 188 (259)
.++..+|||||||+|.++..+++..|+.+++++|+ +++++.|++...++.+..+|+.++.+ .||+|++..++|++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 45567899999999999999999889999999999 89999998755678999999988654 5999999999999988
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
++..++++++.++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 888899999999863 788998886544
No 25
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.53 E-value=2.1e-13 Score=119.53 Aligned_cols=143 Identities=10% Similarity=0.071 Sum_probs=99.8
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-Cc
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PA 174 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~ 174 (259)
+...++ .....+|||||||+|.++..+++..+. +++++|. +.++.+++. ...++.++.+|+.+ +.+ .|
T Consensus 114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 344444 234579999999999999999998766 5999998 555544321 24689999999887 544 59
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHH
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAK 254 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ 254 (259)
|+|++..++|+..+. ..+|+++++.|+| ||.+++...+.+.+.... ......+.. |- ..-..+|.+++.+
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~--~~--~~~~lps~~~l~~ 260 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAK--MR--NVYFIPSVPALKN 260 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhc--Cc--cceeCCCHHHHHH
Confidence 999999999988764 4799999999999 999988776666544321 000001100 00 0012468899999
Q ss_pred HHhcC
Q 041250 255 IFADS 259 (259)
Q Consensus 255 ll~~a 259 (259)
++++|
T Consensus 261 ~L~~a 265 (322)
T PRK15068 261 WLERA 265 (322)
T ss_pred HHHHc
Confidence 98875
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.53 E-value=1.3e-13 Score=112.70 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=89.4
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-Cc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~ 174 (259)
..+++.++ ...+.+|||+|||+|.++..++++ +.+++++|+ +.+++.+++ ..-++.+...|+.. +.+ .|
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 45666666 445679999999999999999986 568999999 888887665 22247788888765 333 59
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
|+|+++.++|+++++....++++++++|+| ||++++++....
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~ 137 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDT 137 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEeccc
Confidence 999999999999888888999999999999 999888776543
No 27
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.53 E-value=1.1e-13 Score=118.04 Aligned_cols=101 Identities=12% Similarity=0.219 Sum_probs=84.7
Q ss_pred CCCCeEEEecCCchH----HHHHHHHHCC-----CCeEEEeec-hHHHhhcccC--------------------------
Q 041250 113 EGLNSLVDVGGGTGT----AAKAIAKAFP-----KLECTCFDL-PHVVNGLESD-------------------------- 156 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 156 (259)
.+..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 5666777655 578999999 8999988861
Q ss_pred ------CCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 157 ------LVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 157 ------~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
..+|+|..+|+.+ +.+ +||+|+++++||+++++...+++++++++|+| ||.+++-..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEECc
Confidence 1479999999998 333 59999999999999998888999999999999 999888654
No 28
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=5.2e-13 Score=116.15 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=85.9
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CC-CCc
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AI-SPA 174 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~-~~~ 174 (259)
++..+. .....+|||||||+|.++..++...++ +++++|. +.++.+++. ...++.+...++.+ +. ..|
T Consensus 113 ~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 113 VLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 444444 344579999999999999999988764 7999998 556654322 34688888888766 33 369
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
|+|++..++|++++. ...|++++++|+| ||.|++.+.+.+.+
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~ 231 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGD 231 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCc
Confidence 999999999999775 4799999999999 99999988776543
No 29
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.50 E-value=1.2e-13 Score=100.74 Aligned_cols=89 Identities=22% Similarity=0.362 Sum_probs=74.9
Q ss_pred EEEecCCchHHHHHHHHHC---CCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeeh-hhhcc
Q 041250 118 LVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLK-WILLD 185 (259)
Q Consensus 118 vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~-~vlh~ 185 (259)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++ ...+++|+++|+.+ ++. .||+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999986 5689999999 899998887 33599999999988 433 69999995 55999
Q ss_pred CChHHHHHHHHHHHHhcccCCCCc
Q 041250 186 WNDEECVKILKKCKEAITRDGKKR 209 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg 209 (259)
+++++..++++++.+.++| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 66
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.50 E-value=6.2e-13 Score=110.28 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=91.6
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--Ccc
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PAY 175 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~D 175 (259)
++..+. ..+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .+|
T Consensus 31 ~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 31 AVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 444444 446789999999999999999999987 78999999 788877765 34689999999987 443 599
Q ss_pred EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
++++.+++|+.++ ...+++++++.|+| ||++++.+...+..
T Consensus 109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~~---gG~l~~~~~~~~~~ 149 (223)
T TIGR01934 109 AVTIAFGLRNVTD--IQKALREMYRVLKP---GGRLVILEFSKPAN 149 (223)
T ss_pred EEEEeeeeCCccc--HHHHHHHHHHHcCC---CcEEEEEEecCCCc
Confidence 9999999998876 45899999999999 99999998865443
No 31
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.50 E-value=7.4e-15 Score=106.68 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=59.7
Q ss_pred EEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCC---CeEEEeCCCCCCC-C-CccEEeehhhhccCC
Q 041250 119 VDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLV---NLKYVGGDMFKAI-S-PAYAVLLKWILLDWN 187 (259)
Q Consensus 119 lDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~---ri~~~~~d~~~~~-~-~~D~~~~~~vlh~~~ 187 (259)
||||||+|.++..+++.+|..+++++|+ +.+++.+++ ... ++++...|.++.. + .||+|++.+++|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 899988877 222 4455555555533 3 699999999999994
Q ss_pred hHHHHHHHHHHHHhcccCCCCcEE
Q 041250 188 DEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 188 d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
+ ...+++++++.|+| ||+|
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 4 56999999999999 8875
No 32
>PRK08317 hypothetical protein; Provisional
Probab=99.50 E-value=9e-13 Score=110.29 Aligned_cols=107 Identities=19% Similarity=0.235 Sum_probs=90.5
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--Cc
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PA 174 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~ 174 (259)
+++.+. +....+|||+|||+|.++..+++.+ |..+++++|+ +..++.+++ ...++++..+|+.. +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 445555 6667899999999999999999988 7889999999 777777765 35789999999877 544 59
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
|+|++.+++|++++. ..+++++.++|+| ||.+++.++.
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTD 126 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecC
Confidence 999999999999874 4789999999999 9999998854
No 33
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.49 E-value=8.4e-13 Score=110.63 Aligned_cols=111 Identities=22% Similarity=0.205 Sum_probs=91.3
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-- 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-- 172 (259)
++..+. ..+..+|||+|||+|.++..+++.+| +.+++++|+ +.+++.+++ ...++.++.+|+.+ +.+
T Consensus 43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 444444 34567999999999999999999998 789999999 778777776 24679999999987 433
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.+|+|++++++|++++. ..+|+++.+.|+| ||++++++...+..
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~ 164 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTN 164 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCc
Confidence 59999999999998874 5789999999999 99999999876543
No 34
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.49 E-value=2.1e-13 Score=119.12 Aligned_cols=135 Identities=15% Similarity=0.085 Sum_probs=97.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL 183 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl 183 (259)
...+|||||||+|.++..+++. +.+++++|. +.+++.|++ ...+++++.+|+.+ +.+ .||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3468999999999999988863 679999999 889988875 22589999999876 433 59999999999
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh-hhcc----CccccCHHHHHHHHhc
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM-MVLL----TGTERDEKEWAKIFAD 258 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~----~g~~rt~~e~~~ll~~ 258 (259)
|++++.. .+|+++++.|+| ||.+++........ .+..........+ ++.. ..+..+.+|+++++++
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH
Confidence 9999864 799999999999 99988887532110 0000000000011 1111 2346899999999987
Q ss_pred C
Q 041250 259 S 259 (259)
Q Consensus 259 a 259 (259)
+
T Consensus 280 a 280 (322)
T PLN02396 280 A 280 (322)
T ss_pred c
Confidence 5
No 35
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=1.5e-12 Score=110.38 Aligned_cols=124 Identities=13% Similarity=0.184 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcch------hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCC
Q 041250 85 LNNFFNEAMASDAR------LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDL 157 (259)
Q Consensus 85 ~~~~f~~~m~~~~~------~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ 157 (259)
..+.|.++...+.. ..+..+++.++ .....+|||+|||+|.++..+.+. ..+++++|+ +.+++.+++..
T Consensus 9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 9 IAAAFGRAAAHYEQHAELQRQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC
Confidence 44567766554432 22344555555 345678999999999999888764 568999999 89999888754
Q ss_pred CCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 158 VNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 158 ~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
..+.++.+|+.+ +++ .||+|+.+.++|..++ ...+|+++.++|+| ||.+++..+.
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~---gG~l~~~~~~ 142 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLAVQWCGN--LSTALRELYRVVRP---GGVVAFTTLV 142 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCC--HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 556889999987 555 4999999999986665 35899999999999 8998887654
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.48 E-value=1e-12 Score=110.05 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=84.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND 188 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d 188 (259)
...+|||+|||+|.++..+++.+|+.+++++|+ +.++..+++ ..++++++.+|+.+ +.+ .||+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357899999999999999999999999999999 788877776 44689999999987 544 4999999999998766
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
. .++|+++.++|+| ||.+++.++
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~ 136 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTF 136 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeC
Confidence 3 4799999999999 999988764
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=9e-13 Score=121.76 Aligned_cols=114 Identities=17% Similarity=0.268 Sum_probs=94.4
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC---CCC-
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK---AIS- 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~---~~~- 172 (259)
.+.+++.++ ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ ..++++++.+|+.+ ++|
T Consensus 26 ~~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 345566655 4456799999999999999999885 37899999 888877654 35689999999964 344
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.||+|++..++|++++++..++++++++.|+| ||++++.|......
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~ 148 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQS 148 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCC
Confidence 49999999999999998888999999999999 99999999876544
No 38
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=5.3e-13 Score=113.53 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHhcchhh------hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 041250 83 SKLNNFFNEAMASDARLA------TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 155 (259)
Q Consensus 83 ~~~~~~f~~~m~~~~~~~------~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 155 (259)
.+.++.|.+.+-+..... ...+.+.+.+...+..+|||+|||+|.++..+++. +.+++++|+ +++++.|++
T Consensus 7 d~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~ 84 (255)
T PRK11036 7 DDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQ 84 (255)
T ss_pred hhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 355677777665443211 11111222211245679999999999999999987 468999999 899988876
Q ss_pred ------CCCCeEEEeCCCCC--CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 156 ------DLVNLKYVGGDMFK--AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 156 ------~~~ri~~~~~d~~~--~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
..++++++.+|+.+ +.+ .||+|++..++|++++. .++++++.++|+| ||+++++...
T Consensus 85 ~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~n 151 (255)
T PRK11036 85 AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADP--KSVLQTLWSVLRP---GGALSLMFYN 151 (255)
T ss_pred HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCH--HHHHHHHHHHcCC---CeEEEEEEEC
Confidence 24689999999876 233 59999999999998775 4799999999999 9999887543
No 39
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=2e-12 Score=109.62 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=101.8
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~ 173 (259)
.+.+++++. +.++.+|||||||-|.+++.++++| +++++++++ ++..+.+++ ..++|++.-.|+.+....
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 356778888 8999999999999999999999999 999999999 666666655 456999999999885555
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
||-|+..-.++++..+.-...++++++.|+| ||++++.....++..
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~ 183 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQE 183 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCcc
Confidence 9999999999999998888999999999999 999999988777644
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.46 E-value=4.4e-13 Score=107.82 Aligned_cols=108 Identities=16% Similarity=0.274 Sum_probs=95.7
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC--CCCCccEE
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK--AISPAYAV 177 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~--~~~~~D~~ 177 (259)
+..++..++ .....+|+|+|||+|.-...|++++|+..++++|- ++|++.|++...+++|..+|+.+ |-+..|++
T Consensus 19 a~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 19 ARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 466888888 78889999999999999999999999999999998 99999998899999999999998 44469999
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+.+.+||-.+|- .++|.++...|.| ||.|-+.=
T Consensus 97 faNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQm 129 (257)
T COG4106 97 FANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQM 129 (257)
T ss_pred hhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEEC
Confidence 999999977774 5899999999999 88766543
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.45 E-value=6e-13 Score=113.84 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=87.6
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 174 (259)
..+++.++ +.++.+|||||||-|.++..+++++ +++++++.+ ++..+.+++ ..+++++...|+.+..+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 45677777 8888999999999999999999999 899999999 555555544 5689999999998733379
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
|.|+...++.+.+.+.-..+++++.+.|+| ||++++.....+..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDP 172 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--H
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccc
Confidence 999999999999888788999999999999 99999888776654
No 42
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.45 E-value=8.5e-13 Score=103.76 Aligned_cols=129 Identities=17% Similarity=0.174 Sum_probs=93.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC---CCCCccEEeehhhhccCC
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AISPAYAVLLKWILLDWN 187 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~~~D~~~~~~vlh~~~ 187 (259)
.....+|||||||+|.++..+.+... +++++|. +.+++. .++.....+... +...||+|++..+||+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 35678999999999999999966633 9999999 777766 223333322223 223699999999999999
Q ss_pred hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc--cCccccCHHHHHHHHhcC
Q 041250 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL--LTGTERDEKEWAKIFADS 259 (259)
Q Consensus 188 d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~--~~g~~rt~~e~~~ll~~a 259 (259)
+ ...+|+++.+.|+| ||.+++.++...... ...+..+.+... .....++.++|+++++++
T Consensus 93 d--~~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 154 (161)
T PF13489_consen 93 D--PEEFLKELSRLLKP---GGYLVISDPNRDDPS-------PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQA 154 (161)
T ss_dssp H--HHHHHHHHHHCEEE---EEEEEEEEEBTTSHH-------HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHT
T ss_pred c--HHHHHHHHHHhcCC---CCEEEEEEcCCcchh-------hhHHHhcCCcCccCceeccCCHHHHHHHHHHC
Confidence 6 56899999999999 899999987653311 112222222222 455789999999999875
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.45 E-value=1.3e-12 Score=113.09 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=88.4
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-Ccc
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAY 175 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D 175 (259)
.++..++ .....+|||+|||+|..+..+++. +.+++++|. +.+++.+++ ..-++++...|+.. +.+ .||
T Consensus 111 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD 186 (287)
T PRK12335 111 EVLEAVQ--TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD 186 (287)
T ss_pred HHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence 3444444 334569999999999999999886 579999999 788887665 23378899999877 344 599
Q ss_pred EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
+|++..++|+.++++...+++++.+.|+| ||+++++.....
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~ 227 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNP---GGYNLIVCAMDT 227 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEeccc
Confidence 99999999999988888999999999999 999887765543
No 44
>PLN03075 nicotianamine synthase; Provisional
Probab=99.44 E-value=8.8e-13 Score=112.94 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=81.6
Q ss_pred CCCCeEEEecCCchHHHHH--HHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCCCC---CCccEEee
Q 041250 113 EGLNSLVDVGGGTGTAAKA--IAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKAI---SPAYAVLL 179 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~~---~~~D~~~~ 179 (259)
.++.+|+|||||.|-++.. +++.+|+.+++++|. +++++.|++ ..+|++|+.+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3678999999998844333 345689999999999 889988887 2478999999998732 36999999
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
. ++|+|+.++-.++|+++++.|+| ||.+++--
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEec
Confidence 9 99999877778999999999999 78776654
No 45
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.43 E-value=1.5e-12 Score=115.78 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=89.2
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C---CCCeEEEeCCCCCCCC
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D---LVNLKYVGGDMFKAIS 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~---~~ri~~~~~d~~~~~~ 172 (259)
..+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ . ..+++++..|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 45666666 33346999999999999999999999999999999 788888875 1 2489999999988543
Q ss_pred --CccEEeehhhhcc---CChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 173 --PAYAVLLKWILLD---WNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 173 --~~D~~~~~~vlh~---~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+||+|+++..+|. ++++...++++.+++.|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 5999999866653 5666778999999999999 99998874
No 46
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.41 E-value=2.8e-12 Score=102.45 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=86.5
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--Cc
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PA 174 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~ 174 (259)
.+++.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ ..+.++++..|.+++.+ .|
T Consensus 22 lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~f 99 (170)
T PF05175_consen 22 LLLDNLP--KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKF 99 (170)
T ss_dssp HHHHHHH--HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCE
T ss_pred HHHHHHh--hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccce
Confidence 3445555 33578999999999999999999999999999999 888888876 23339999999999655 59
Q ss_pred cEEeehhhhccCCh---HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 175 YAVLLKWILLDWND---EECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 175 D~~~~~~vlh~~~d---~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
|+|++.--+|.-.+ +-..++++.+.+.|+| ||+++++-.
T Consensus 100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~~ 141 (170)
T PF05175_consen 100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP---GGRLFLVIN 141 (170)
T ss_dssp EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred eEEEEccchhcccccchhhHHHHHHHHHHhccC---CCEEEEEee
Confidence 99999988886654 3467899999999999 999976543
No 47
>PRK06202 hypothetical protein; Provisional
Probab=99.41 E-value=4.8e-12 Score=106.14 Aligned_cols=102 Identities=23% Similarity=0.261 Sum_probs=80.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHH----CCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS--PAYAVLLKWI 182 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~~~~~~v 182 (259)
.+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++ ...++++...+... +.+ .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999888763 46779999999 999998886 23456666654433 222 5999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
+|++++++..++|++++++++ |.+++.+...+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~ 170 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRS 170 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccC
Confidence 999999888899999999986 55666666444
No 48
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.40 E-value=1.2e-12 Score=104.74 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=81.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCCCC--CccEEeehhhhcc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAIS--PAYAVLLKWILLD 185 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~ 185 (259)
-....+++|+|||.|.++..|+.+. -+.+++|+ +.+++.|++ ..++|+|+..|+-+..| .||+|+++-++|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4556789999999999999999986 36999999 999999987 55899999999988655 5999999999999
Q ss_pred CCh-HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 186 WND-EECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 186 ~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+++ ++...+++++.++|+| ||.+++...
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEe
Confidence 986 6788899999999999 899988876
No 49
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.40 E-value=2.9e-12 Score=103.97 Aligned_cols=102 Identities=19% Similarity=0.301 Sum_probs=82.6
Q ss_pred HHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-CccEE
Q 041250 105 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-PAYAV 177 (259)
Q Consensus 105 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~~ 177 (259)
+..++ .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ...+++++.+|...+.+ .||++
T Consensus 24 ~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v 101 (187)
T PRK08287 24 LSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI 101 (187)
T ss_pred HHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence 44555 56678999999999999999999999999999999 888888875 23679999999865544 59999
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++....++ ...+++++.+.|+| ||++++...
T Consensus 102 ~~~~~~~~-----~~~~l~~~~~~Lk~---gG~lv~~~~ 132 (187)
T PRK08287 102 FIGGSGGN-----LTAIIDWSLAHLHP---GGRLVLTFI 132 (187)
T ss_pred EECCCccC-----HHHHHHHHHHhcCC---CeEEEEEEe
Confidence 98765543 24689999999999 899877553
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.39 E-value=8.2e-12 Score=111.93 Aligned_cols=111 Identities=7% Similarity=0.063 Sum_probs=90.5
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCCCCCCccEEeeh
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFKAISPAYAVLLK 180 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~~~~~~D~~~~~ 180 (259)
+++.+. +.+..+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ ....+++...|+.+....||.|+..
T Consensus 159 l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~ 235 (383)
T PRK11705 159 ICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSV 235 (383)
T ss_pred HHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEe
Confidence 445555 5667899999999999999998876 679999999 888888876 2235888888886533469999999
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
.++++.++.....+++++.++|+| ||++++.+...+.
T Consensus 236 ~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~ 272 (383)
T PRK11705 236 GMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNK 272 (383)
T ss_pred CchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCC
Confidence 999998887778899999999999 9999998765443
No 51
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.39 E-value=4.8e-12 Score=102.15 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=84.7
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-Cc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~ 174 (259)
+.+++.++ ...+.++||+|||.|..+..|+++ +..++.+|. +..++.+++ ..-.|+....|+.+ .++ .+
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 44566666 555789999999999999999999 788999999 666665544 44459999999987 555 59
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
|+|+...++++.+.+...++++++.+.++| ||.+++...+.
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~ 136 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFME 136 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB-
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecc
Confidence 999998999999999899999999999999 88877766543
No 52
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.38 E-value=1.3e-11 Score=102.67 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=76.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCccEEeehhhhcc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPAYAVLLKWILLD 185 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~ 185 (259)
....+|||+|||+|.++..+++. +.+++++|+ ++++..|++ ...++.|..+|+.+....||+|++..++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 34689999999999999999886 458999999 889988876 125899999999873367999999999999
Q ss_pred CChHHHHHHHHHHHHhccc
Q 041250 186 WNDEECVKILKKCKEAITR 204 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p 204 (259)
++++....+++++.+.+++
T Consensus 132 ~~~~~~~~~l~~i~~~~~~ 150 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKE 150 (219)
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 9887788899999998876
No 53
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=9.3e-12 Score=109.85 Aligned_cols=109 Identities=13% Similarity=0.192 Sum_probs=87.1
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC-CccE
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS-PAYA 176 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~-~~D~ 176 (259)
.+++.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ ..-..+++..|.++..+ .||+
T Consensus 187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3455555 33345899999999999999999999999999999 788888876 22346788889887544 5999
Q ss_pred EeehhhhccC---ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 177 VLLKWILLDW---NDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 177 ~~~~~vlh~~---~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
|+++..+|+. ..+...++++++.+.|+| ||.++|+-.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 9999999864 345567899999999999 999977654
No 54
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.36 E-value=1.7e-11 Score=101.35 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=85.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEeCCCCC-C---
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFK-A--- 170 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d~~~-~--- 170 (259)
....+|||+|||.|..+..|+++ +.+++++|+ |.+++.+.+ ...+|+++.+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999987 778999999 777776421 13579999999998 3
Q ss_pred CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 171 ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 171 ~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
.+.||.|+-+.++|+++.+...+.++.+.++|+| ||++++.-+..+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~ 156 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYD 156 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcC
Confidence 2359999999999999999989999999999999 898777766543
No 55
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.35 E-value=2.7e-11 Score=90.99 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=80.0
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CC-CC
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AI-SP 173 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~-~~ 173 (259)
+++.+. .....+|+|+|||+|.++..+++++|+.+++++|. +.+++.+++ ...+++++.+|... .. +.
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 445555 55567999999999999999999999999999999 788887765 34689999998764 12 36
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+|++++....+ ...++++++++.|+| ||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 99999865433 345899999999999 8987764
No 56
>PRK05785 hypothetical protein; Provisional
Probab=99.33 E-value=1.3e-11 Score=103.14 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=78.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChH
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDE 189 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~ 189 (259)
...+|||||||+|.++..+++.+ +.+++++|+ ++|++.|++. ..++.+|+.+ |++ .||+|++...+|+++|.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 46799999999999999999987 579999999 9999998853 3467888887 665 49999999999998875
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 190 ECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 190 ~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
.+.+++++++|+| . +.++|...|+
T Consensus 127 --~~~l~e~~RvLkp---~--~~ile~~~p~ 150 (226)
T PRK05785 127 --EKVIAEFTRVSRK---Q--VGFIAMGKPD 150 (226)
T ss_pred --HHHHHHHHHHhcC---c--eEEEEeCCCC
Confidence 4799999999998 3 3455654443
No 57
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.32 E-value=7.5e-12 Score=100.94 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=74.8
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC-CCccEEeehhhhccC
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-SPAYAVLLKWILLDW 186 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-~~~D~~~~~~vlh~~ 186 (259)
..+|||||||+|.++..++...|+.+++++|. +.+++.+++ ..++++++.+|+.+ +. ..||+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 67999999999999999999999999999999 677766654 34579999999987 32 3699988765 5443
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
..+++.+++.|+| ||++++..
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEEc
Confidence 3578888999999 89988764
No 58
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.3e-11 Score=103.49 Aligned_cols=111 Identities=12% Similarity=0.167 Sum_probs=91.5
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-C
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-P 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~ 173 (259)
.+-+++.++ .....+|+|+|||.|.+++.+++.+|+.+++.+|. ..+++.+++ ..++..+...|.+++.. +
T Consensus 147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 356777887 44444999999999999999999999999999999 788888887 33444778889988655 6
Q ss_pred ccEEeehhhhccCC---hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 174 AYAVLLKWILLDWN---DEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 174 ~D~~~~~~vlh~~~---d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
||.|+++--+|.-- ..-..+|++.+++.|++ ||.|.|+-.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 99999999999643 34456899999999999 999988765
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.31 E-value=1.8e-11 Score=99.09 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=78.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-CccEEeehhhhc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-PAYAVLLKWILL 184 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh 184 (259)
+...+|||+|||+|..+..++++.|+.+++++|. +.+++.+++ ..++++++.+|..+ +.. +||+|+++.+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 3468999999999999999999999999999999 888887776 34569999999987 333 5999998752
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
. ....+++.+++.|+| ||++++.+.
T Consensus 122 --~--~~~~~l~~~~~~Lkp---GG~lv~~~~ 146 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKP---GGRFLALKG 146 (187)
T ss_pred --c--CHHHHHHHHHHhcCC---CeEEEEEeC
Confidence 1 235789999999999 999998864
No 60
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.29 E-value=9.3e-11 Score=94.94 Aligned_cols=150 Identities=14% Similarity=0.109 Sum_probs=109.0
Q ss_pred HHHHhcccccCCCC-eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeE-EEeCCCCCC---C
Q 041250 103 VMIQKCKNVFEGLN-SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLK-YVGGDMFKA---I 171 (259)
Q Consensus 103 ~~~~~~~~~~~~~~-~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~-~~~~d~~~~---~ 171 (259)
.|++.+...++... +||+||+|+|..+..+++.+|+++..--|. +......+. ..+++. -+..|..++ +
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 34444443344444 599999999999999999999999888787 333222221 222332 133444442 2
Q ss_pred C--------CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhcc-
Q 041250 172 S--------PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL- 242 (259)
Q Consensus 172 ~--------~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~- 242 (259)
+ .+|+|++.+++|..+.+.+..+++.+.+.|+| ||.|++.-++..+....+ +....||-..-...
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDP 166 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCC
Confidence 1 48999999999999999999999999999999 999999999887765432 33467887776654
Q ss_pred CccccCHHHHHHHHhc
Q 041250 243 TGTERDEKEWAKIFAD 258 (259)
Q Consensus 243 ~g~~rt~~e~~~ll~~ 258 (259)
....|..++..++.++
T Consensus 167 ~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 167 EWGIRDIEDVEALAAA 182 (204)
T ss_pred CcCccCHHHHHHHHHH
Confidence 6788999998888764
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.29 E-value=3.8e-11 Score=96.70 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=82.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCC-CCCccEEeehhhhccC
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA-ISPAYAVLLKWILLDW 186 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~-~~~~D~~~~~~vlh~~ 186 (259)
.+..+|||+|||+|.++..+++..+ +++++|+ |.+++.+++ ...+++++.+|.++. .+.||+|+++..+|..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 8999999 888888776 334688999999873 3369999999887766
Q ss_pred ChH-------------------HHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 187 NDE-------------------ECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 187 ~d~-------------------~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
++. ...++++++.+.|+| ||++++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~ 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC
Confidence 532 135689999999999 999999886544
No 62
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.27 E-value=3.6e-11 Score=104.67 Aligned_cols=99 Identities=12% Similarity=0.238 Sum_probs=80.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC--CC-Cc-----cE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA--IS-PA-----YA 176 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~--~~-~~-----D~ 176 (259)
+...+|||+|||+|..+..++++.+ ..+++++|+ +++++.+++ ...+|.++.+|+.+. ++ .+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3457899999999999999999987 588999999 788877765 124577789999873 33 22 35
Q ss_pred EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+++...+|+++++++..+|++++++|+| ||.++|.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 5566899999999999999999999999 8887763
No 63
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.27 E-value=1.5e-11 Score=101.89 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=81.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCC----CeEEEeCCCCCCCCCccEEeehhh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLV----NLKYVGGDMFKAISPAYAVLLKWI 182 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~----ri~~~~~d~~~~~~~~D~~~~~~v 182 (259)
..+|||||||.|.++..|++. +.+++++|. +.+++.|++ ... |+++.+.|.....+.||+|+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 367999999999999999998 578999999 888888886 122 578888888775556999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
++|..|. ..+++.+.+.|+| +|+++|....
T Consensus 168 leHV~dp--~~~l~~l~~~lkP---~G~lfittin 197 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTIN 197 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC---CCceEeeehh
Confidence 9999774 4799999999999 9999998764
No 64
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.26 E-value=1.3e-10 Score=96.36 Aligned_cols=113 Identities=11% Similarity=0.063 Sum_probs=88.2
Q ss_pred HHHHHhccc-ccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEE
Q 041250 102 SVMIQKCKN-VFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKY 162 (259)
Q Consensus 102 ~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~ 162 (259)
+.+.+.++. ......+|||+|||.|..+..|+++ +.+++++|+ +.+++.+.+ ...+|++
T Consensus 24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEE
Confidence 444444431 1345579999999999999999986 789999999 777776521 2468999
Q ss_pred EeCCCCCCC----CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 163 VGGDMFKAI----SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 163 ~~~d~~~~~----~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
..+|+++.. +.||.|+-+.++|+++.+...+.++.+.+.|+| ||+++++....+
T Consensus 102 ~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~ 159 (218)
T PRK13255 102 YCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYP 159 (218)
T ss_pred EECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeC
Confidence 999999832 358999999999999999999999999999999 887555444433
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.25 E-value=2.6e-11 Score=99.60 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=78.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCC-CC-C--CC--CccEEeehh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDM-FK-A--IS--PAYAVLLKW 181 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~-~~-~--~~--~~D~~~~~~ 181 (259)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+ .. + .+ .+|++++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 467899999999999999999999999999999 888888775 337899999999 33 3 43 499998865
Q ss_pred hhccCC------hHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 182 ILLDWN------DEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 182 vlh~~~------d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
..+... ......++++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 432111 11235789999999999 99998865
No 66
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.23 E-value=2.5e-11 Score=99.84 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=79.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CC--CCccEEeehhhhcc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AI--SPAYAVLLKWILLD 185 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~--~~~D~~~~~~vlh~ 185 (259)
...+|||||||-|.++..+++. +.+++++|+ +..|+.|+. ..-.+.+.+....+ .. .+||+|++..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 4578999999999999999999 489999999 888888875 33345566665555 22 36999999999999
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.+|.+ .+++++.+.++| ||.+++....
T Consensus 137 v~dp~--~~~~~c~~lvkP---~G~lf~STin 163 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP---GGILFLSTIN 163 (243)
T ss_pred cCCHH--HHHHHHHHHcCC---CcEEEEeccc
Confidence 99976 599999999999 8888777654
No 67
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.23 E-value=1.3e-10 Score=96.96 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=74.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCccEEeehhhhcc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPAYAVLLKWILLD 185 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~ 185 (259)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.|++ ..+++.+..+|+......||++++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 446799999999999999999875 46999999 888888876 225899999995333346999999999999
Q ss_pred CChHHHHHHHHHHHHhccc
Q 041250 186 WNDEECVKILKKCKEAITR 204 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p 204 (259)
++++....+++++.+.+++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG 158 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC
Confidence 9998888999999987653
No 68
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.20 E-value=1.2e-10 Score=101.58 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=74.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC----------CCCeEEEeCCCCCCCCCccEEeehhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD----------LVNLKYVGGDMFKAISPAYAVLLKWI 182 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~ri~~~~~d~~~~~~~~D~~~~~~v 182 (259)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ..+++|..+|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999986 568999999 8898887761 24688999997653346999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
+|+++++....+++++.+ +.+ |+++|
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~----g~liI 247 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE----KRLII 247 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC----CEEEE
Confidence 999998877788888875 444 45554
No 69
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=2.4e-10 Score=94.06 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=76.5
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC---
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--- 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--- 172 (259)
+++.++ ..+..+|||||||+|..+..+++..+ ..+++++|+ +++++.+++ ...+++++.+|..+..+
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 344444 55668999999999999999998764 568999999 888887775 23579999999987332
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.||+|++...++..+ +++.+.|+| ||+|++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 599999998876554 356788999 9998774
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.19 E-value=2.1e-10 Score=99.02 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=77.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehh---
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKW--- 181 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~--- 181 (259)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|++++.+ .||+|++.-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 356899999999999999999999999999999 888888876 23689999999988554 599999752
Q ss_pred ----------hhccCCh----------HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 182 ----------ILLDWND----------EECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 182 ----------vlh~~~d----------~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+++.+. +...++++++.+.|+| ||+++ +|.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~-~e~ 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLV-VEV 251 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEE-EEE
Confidence 1121221 2236789999999999 88765 554
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.18 E-value=1.4e-10 Score=94.61 Aligned_cols=98 Identities=18% Similarity=0.268 Sum_probs=76.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C---CC--CccEEeehh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A---IS--PAYAVLLKW 181 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~---~~--~~D~~~~~~ 181 (259)
...++||||||+|.++..+++++|+.+++++|+ +.+++.+++ ...+++++.+|+.+ + .+ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 356899999999999999999999999999999 778877765 34689999999975 2 33 478887765
Q ss_pred hhccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 182 ILLDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 182 vlh~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
..+ |+... ...++++++++|+| ||.|++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 332 33221 14689999999999 99987765
No 72
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.17 E-value=4.7e-10 Score=93.99 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=77.9
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-C--C-CCccEEeehhhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-A--I-SPAYAVLLKWIL 183 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~--~-~~~D~~~~~~vl 183 (259)
.+..+|||||||+|.++..+++. ..+++++|. +.++..+++ ...++++...|+.+ + . ..||+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 34678999999999999998876 467999998 777777765 23467888888765 2 2 259999999999
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++.++. ..+|+++.+.|+| ||.+++...
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKP---GGLVFFSTL 152 (233)
T ss_pred hccCCH--HHHHHHHHHHcCC---CcEEEEEec
Confidence 988774 4789999999999 899887754
No 73
>PRK04266 fibrillarin; Provisional
Probab=99.17 E-value=3.2e-10 Score=94.46 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=73.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC-----CC-CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA-----IS-PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~-----~~-~~D~~~~~~ 181 (259)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+.+ ...++.++.+|...+ .+ .+|+++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~--- 146 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY--- 146 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE---
Confidence 66778999999999999999999988778999999 777664432 236899999998753 12 488887
Q ss_pred hhccCChH-HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 182 ILLDWNDE-ECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 182 vlh~~~d~-~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
|+.++. ....+|+++++.|+| ||+++|.
T Consensus 147 --~d~~~p~~~~~~L~~~~r~LKp---GG~lvI~ 175 (226)
T PRK04266 147 --QDVAQPNQAEIAIDNAEFFLKD---GGYLLLA 175 (226)
T ss_pred --ECCCChhHHHHHHHHHHHhcCC---CcEEEEE
Confidence 444432 334578999999999 9999994
No 74
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=9.8e-11 Score=95.89 Aligned_cols=173 Identities=14% Similarity=0.190 Sum_probs=121.0
Q ss_pred CchHHHHHHHHHHhcchhhhHHHHHhcccc--cCC--CCeEEEecCCchHHHHHHHHHCCC--CeEEEeec-hHHHhhcc
Q 041250 82 ESKLNNFFNEAMASDARLATSVMIQKCKNV--FEG--LNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLE 154 (259)
Q Consensus 82 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~--~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~ 154 (259)
.+..++.|...-....-..-.++.+.++.. ... ..+|++||||.|....-+++.+|+ +++..+|. |.+++..+
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk 114 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK 114 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence 344555565543332111123344444432 222 238999999999999999999888 99999998 99998887
Q ss_pred c----CCCCeEEEeCCCCCC-----CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250 155 S----DLVNLKYVGGDMFKA-----IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK 223 (259)
Q Consensus 155 ~----~~~ri~~~~~d~~~~-----~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~ 223 (259)
+ ...|+.-...|+..+ .. ..|++++-.+|.-.++++....++++++.|+| ||.|++.|+...+-..
T Consensus 115 ~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~Dlaq 191 (264)
T KOG2361|consen 115 KSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQ 191 (264)
T ss_pred hccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHH
Confidence 7 456777777777662 11 48999999999999999999999999999999 9999999987665322
Q ss_pred CchhhhhhhhhhhhhhhccCc---cccCHHHHHHHHhcC
Q 041250 224 DYKSIETQLFFEMFMMVLLTG---TERDEKEWAKIFADS 259 (259)
Q Consensus 224 ~~~~~~~~~~~d~~m~~~~~g---~~rt~~e~~~ll~~a 259 (259)
.. + .....++-+..+...| ...+.++..+||++|
T Consensus 192 lR-F-~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 192 LR-F-KKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred Hh-c-cCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 11 0 1123444444444333 457899999998875
No 75
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.15 E-value=5.5e-10 Score=88.77 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=83.9
Q ss_pred HHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---CCCcc
Q 041250 105 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---ISPAY 175 (259)
Q Consensus 105 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~~~~D 175 (259)
+..+. ..+..+++|||||+|..+++++...|..+++.+|. +++++..++ ..++++++.+|.-+. .+.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 44555 67788999999999999999999999999999998 777777665 679999999999873 34699
Q ss_pred EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.+++.-. .....+|+.+...|+| ||+|++.-..
T Consensus 105 aiFIGGg------~~i~~ile~~~~~l~~---ggrlV~nait 137 (187)
T COG2242 105 AIFIGGG------GNIEEILEAAWERLKP---GGRLVANAIT 137 (187)
T ss_pred EEEECCC------CCHHHHHHHHHHHcCc---CCeEEEEeec
Confidence 9999865 2245799999999999 8987766543
No 76
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.15 E-value=9e-10 Score=91.35 Aligned_cols=122 Identities=7% Similarity=0.038 Sum_probs=96.5
Q ss_pred hHHHHHhcccc-cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeE
Q 041250 101 TSVMIQKCKNV-FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLK 161 (259)
Q Consensus 101 ~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~ 161 (259)
.+.+.+.+... ..+..+|++.|||.|.-+..|++. +.+++++|+ +.+++.+.+ ...+|+
T Consensus 29 np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 29 NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 45555555532 344579999999999999999998 678999999 777776422 356899
Q ss_pred EEeCCCCC-CC-----CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchh
Q 041250 162 YVGGDMFK-AI-----SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKS 227 (259)
Q Consensus 162 ~~~~d~~~-~~-----~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~ 227 (259)
+.++|+|+ +. ..||+|+-+.+|+.++++...+..+.+.+.|+| ||+++++....+....+||+
T Consensus 107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~~~~~GPPf 175 (226)
T PRK13256 107 IYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHDKKSQTPPY 175 (226)
T ss_pred EEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecCCCCCCCCC
Confidence 99999998 32 259999999999999999999999999999999 89998887755443345544
No 77
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.15 E-value=1.4e-10 Score=99.59 Aligned_cols=91 Identities=14% Similarity=0.218 Sum_probs=74.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCC---eEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccC
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKL---ECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDW 186 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~ 186 (259)
...+|||+|||+|.++..+++..|.. +++++|+ +.+++.|++..+++.|..+|..+ |++ .||+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45789999999999999999988753 6899999 88999888766789999999887 665 4999986532
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+ ..+++++++|+| ||+++++.+
T Consensus 161 ~-----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 P-----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred C-----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 236789999999 999998754
No 78
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.15 E-value=4e-10 Score=95.27 Aligned_cols=98 Identities=19% Similarity=0.305 Sum_probs=77.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehhhh--
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKWIL-- 183 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~vl-- 183 (259)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|++++.+ .||+|++....
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346899999999999999999999999999998 888888775 34579999999988554 59999875332
Q ss_pred ----ccCChHH------------------HHHHHHHHHHhcccCCCCcEEEEE
Q 041250 184 ----LDWNDEE------------------CVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 184 ----h~~~d~~------------------~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
|.+..+. ...+++++.+.|+| ||.+++.
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~ 216 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLE 216 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEE
Confidence 2222211 24789999999999 8887764
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=5.8e-10 Score=92.28 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=77.6
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---C
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S 172 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~ 172 (259)
.+++.++ .....+|||||||+|.++..+++.. ++.+++++|+ +++++.+++ ...+++++.+|..+.+ .
T Consensus 67 ~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 67 IMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 3455555 6677899999999999999998875 4579999999 888888876 3468999999998733 2
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.||+|++....+..+ +.+.+.|+| ||++++.
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence 599999887665443 356678999 9998775
No 80
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.14 E-value=3.7e-10 Score=98.40 Aligned_cols=97 Identities=20% Similarity=0.289 Sum_probs=77.3
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehh-----
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKW----- 181 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~----- 181 (259)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+++..+ .||+|++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888988876 24689999999988554 599999752
Q ss_pred --------hhccCCh----------HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 182 --------ILLDWND----------EECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 182 --------vlh~~~d----------~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+++.|. +...++++++.+.|+| ||++++ |.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~-E~ 263 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV-EV 263 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE-EE
Confidence 1122221 2346889999999999 887665 54
No 81
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.12 E-value=2.4e-10 Score=93.10 Aligned_cols=129 Identities=16% Similarity=0.282 Sum_probs=93.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C---CCC-eEEEeCCCCC--CCC-CccEEeehhhhc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D---LVN-LKYVGGDMFK--AIS-PAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---~~r-i~~~~~d~~~--~~~-~~D~~~~~~vlh 184 (259)
+..+.||+|+|.|..+..++..+= -++-++|. +..++.|++ . ..+ .++.+.-+.+ |.+ .||+|++.|++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 467999999999999998765431 15777776 888888886 1 123 4455554444 444 599999999999
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+++|++.+.+|++++++|+| +|.|+|-|.+...+.. .+|- ..++-.|+.+.|+++|++|
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~----~DsSvTRs~~~~~~lF~~A 192 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDE----EDSSVTRSDEHFRELFKQA 192 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEET----TTTEEEEEHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCC----ccCeeecCHHHHHHHHHHc
Confidence 99999999999999999999 9999999998765421 1222 2467779999999999986
No 82
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.12 E-value=6e-10 Score=91.04 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=79.5
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CC-CC
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AI-SP 173 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~-~~ 173 (259)
+++.++ .....+|||+|||+|.++..+++..|+.+++++|+ |.+++.+++ ...+++++.+|..+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 455555 56678999999999999999999899999999999 888888775 33689999999865 22 23
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+|.+++. . ......+++++.+.|+| ||++++....
T Consensus 110 ~d~v~~~-----~-~~~~~~~l~~~~~~Lkp---gG~li~~~~~ 144 (196)
T PRK07402 110 PDRVCIE-----G-GRPIKEILQAVWQYLKP---GGRLVATASS 144 (196)
T ss_pred CCEEEEE-----C-CcCHHHHHHHHHHhcCC---CeEEEEEeec
Confidence 5665442 1 12346889999999999 8998888653
No 83
>PRK04457 spermidine synthase; Provisional
Probab=99.12 E-value=3.1e-10 Score=96.84 Aligned_cols=98 Identities=15% Similarity=0.258 Sum_probs=78.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC---CCC-CccEEeehh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AIS-PAYAVLLKW 181 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~-~~D~~~~~~ 181 (259)
+.+.+|||||||+|.++..+++.+|+.+++++|+ |++++.|++ ..+|++++.+|..+ ..+ +||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3467899999999999999999999999999999 999999887 24799999999865 233 599998753
Q ss_pred hhcc--CChH-HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 182 ILLD--WNDE-ECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 182 vlh~--~~d~-~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
++. .+.. ....+++++++.|+| ||.++++
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 221 2211 125899999999999 8988775
No 84
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.12 E-value=8e-10 Score=91.61 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=77.3
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---C
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S 172 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~ 172 (259)
.+++.++ .....+|||||||+|.++..+++..+ +.+++++|+ +++++.|++ ..++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3445555 66778999999999999999999864 578999998 888888876 3478999999998732 2
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.||+|++....+. +.+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~--------~~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPK--------IPEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCccc--------ccHHHHHhcCc---CcEEEEE
Confidence 5999998765543 34557788999 9998774
No 85
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.11 E-value=1.2e-09 Score=94.49 Aligned_cols=98 Identities=15% Similarity=0.249 Sum_probs=77.3
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehh-----
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKW----- 181 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~----- 181 (259)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|++++.+ +||+|++..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888888876 23569999999998654 599998752
Q ss_pred --------hhccCCh----------HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 182 --------ILLDWND----------EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 182 --------vlh~~~d----------~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+.++.|. +...++++++.+.|+| ||.+ ++|..
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l-~~e~g 245 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFL-VCEIG 245 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEE-EEEEC
Confidence 2222221 2456789999999999 7754 55553
No 86
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.09 E-value=5e-10 Score=83.45 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=76.8
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C--CC--CccEEeehhhh
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A--IS--PAYAVLLKWIL 183 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~--~~--~~D~~~~~~vl 183 (259)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. ..+|++++.+|+++ . .+ ++|+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 489999999999999999998 789999999 888888776 45789999999987 3 33 59999998766
Q ss_pred ccCC------hHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 184 LDWN------DEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 184 h~~~------d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+... .+....+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 6432 12346889999999999 89887753
No 87
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.08 E-value=1.9e-09 Score=92.46 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=77.6
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehhhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKWIL 183 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~vl 183 (259)
..+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++ ...+++++.+|++++.+ .||+|++....
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567899999999999999999999999999999 788887776 34689999999988654 59999875322
Q ss_pred ------ccCCh------------------HHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 184 ------LDWND------------------EECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 184 ------h~~~d------------------~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
+...+ +...++++++.+.|+| ||.+++
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~ 236 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL 236 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE
Confidence 11111 2235789999999999 888776
No 88
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.07 E-value=1.4e-09 Score=96.66 Aligned_cols=107 Identities=12% Similarity=0.201 Sum_probs=81.3
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CCC--
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS-- 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~-- 172 (259)
+++.+. ......+||||||+|.++..+++++|+..++++|+ +.++..+.+ ..+++.++.+|... ..+
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 34456899999999999999999999999999999 777766654 45789999999853 344
Q ss_pred CccEEeehhhhccCChHH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 PAYAVLLKWILLDWNDEE-----CVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~-----~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+|.|++.... .|+... ...+|+.++++|+| ||.+.+..-
T Consensus 192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 48998876432 354322 14789999999999 999888654
No 89
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.07 E-value=1.4e-09 Score=77.90 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=77.4
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---C-CccEEeehhhhccC
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S-PAYAVLLKWILLDW 186 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~-~~D~~~~~~vlh~~ 186 (259)
+++|+|||.|.++..+++ .+..+++++|. +..+..+++ ...++++..+|+.+.. + ++|++++...++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67789999998 666666652 5678999999998832 2 59999999999875
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.+....+++++.+.++| +|.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 45567899999999999 8988765
No 90
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.07 E-value=6.5e-10 Score=92.80 Aligned_cols=109 Identities=6% Similarity=0.126 Sum_probs=87.2
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C--CC-
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A--IS- 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~--~~- 172 (259)
++..+.. .+...+|||+|||+|.++..++++.++++++++++ +.+.+.|++ ..+||+++++|+.+ . .+
T Consensus 35 LL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 35 LLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred HHHhhcc-cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence 3444431 44578999999999999999999999999999999 888888887 57999999999987 2 22
Q ss_pred -CccEEeehhhhccCChH----------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 -PAYAVLLKWILLDWNDE----------------ECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~----------------~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+||+|+++--.+.-+.. .-..+++.+...|+| ||++.++-.
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r 171 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHR 171 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEec
Confidence 48999998766654433 136789999999999 899987753
No 91
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.06 E-value=2.6e-09 Score=88.12 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=77.6
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC---------CC-
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA---------IS- 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~- 172 (259)
+.+.+. .+.+..+|||||||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.++ .+
T Consensus 42 ~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 42 IQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 344444 24566799999999999999999986 55799999995532 234699999999873 32
Q ss_pred -CccEEeehhhhccCChH---------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 -PAYAVLLKWILLDWNDE---------ECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~---------~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+|+|++....|...+. ....+|+.+.+.|+| ||.+++..+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence 49999987666544321 124689999999999 999988754
No 92
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.05 E-value=1.6e-09 Score=90.07 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=77.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC-CCeEEEeCCCCC-C--C-CCccEEeehhhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL-VNLKYVGGDMFK-A--I-SPAYAVLLKWIL 183 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~-~ri~~~~~d~~~-~--~-~~~D~~~~~~vl 183 (259)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .. .++++...|+.+ + . ..||++++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 36789999999999999998864 45999999 777777765 22 268999888865 2 2 259999999999
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
|+..+. ..+|+++.+.|+| ||.+++...
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~---gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKP---GGILFFSTI 150 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCC---CcEEEEEec
Confidence 998875 4799999999999 899887654
No 93
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.04 E-value=2.1e-09 Score=96.23 Aligned_cols=101 Identities=12% Similarity=0.156 Sum_probs=76.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCC-CC---CccEEeehhhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA-IS---PAYAVLLKWIL 183 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~-~~---~~D~~~~~~vl 183 (259)
+...+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ ...+++++.+|++++ .+ +||+|+++-..
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 3456899999999999999999999999999999 899988876 345899999999873 32 49999986422
Q ss_pred ccCC---------------------h--HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 184 LDWN---------------------D--EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 184 h~~~---------------------d--~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
..-. + +--.++++.+.+.|+| ||.++ +|.-
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEiG 382 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEHG 382 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEEC
Confidence 1110 0 1234778888889999 78754 5553
No 94
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.04 E-value=1.2e-09 Score=87.55 Aligned_cols=137 Identities=17% Similarity=0.162 Sum_probs=96.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeE-EEeCCCCC-C-CC--CccEEeehh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLK-YVGGDMFK-A-IS--PAYAVLLKW 181 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~-~~~~d~~~-~-~~--~~D~~~~~~ 181 (259)
++...||+||||+|..-... .--|..++|++|- +.+-+.+.+ ....+. |+.++..+ + ++ ++|+|+...
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 44567899999999875431 2225778999997 666665544 567777 88888877 4 34 599999998
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHh
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFA 257 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~ 257 (259)
+|-.. ++.++.|+++.+.|+| ||+++++|.+..+.+.-.. -.....+-.--..+.|-..|.+-|+.|..
T Consensus 154 vLCSv--e~~~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~--i~q~v~ep~~~~~~dGC~ltrd~~e~Led 222 (252)
T KOG4300|consen 154 VLCSV--EDPVKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNR--ILQQVAEPLWHLESDGCVLTRDTGELLED 222 (252)
T ss_pred EEecc--CCHHHHHHHHHHhcCC---CcEEEEEecccccchHHHH--HHHHHhchhhheeccceEEehhHHHHhhh
Confidence 88544 4468999999999999 9999999998877665311 11223333222335677777777776644
No 95
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.03 E-value=2.5e-09 Score=87.56 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=77.5
Q ss_pred HhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----C-CCCeEEEeCCCCC--C-C-CC
Q 041250 106 QKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----D-LVNLKYVGGDMFK--A-I-SP 173 (259)
Q Consensus 106 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~-~~ri~~~~~d~~~--~-~-~~ 173 (259)
..++ .....+|+|+|||+|.++..+++.. |..+++++|+ +.+++.+++ . .+++.++.+|+.+ + . +.
T Consensus 34 ~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 4445 6667899999999999999998864 6779999999 888887765 2 5789999999876 2 2 35
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
+|.+++.. .......+++.+.+.|+| ||++++
T Consensus 112 ~D~V~~~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 112 FDRIFIGG-----GSEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCEEEECC-----CcccHHHHHHHHHHHcCC---CcEEEE
Confidence 99998743 223356789999999999 898876
No 96
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.03 E-value=2.9e-09 Score=88.27 Aligned_cols=122 Identities=10% Similarity=0.082 Sum_probs=90.7
Q ss_pred hHHHHHhccc-ccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeE
Q 041250 101 TSVMIQKCKN-VFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLK 161 (259)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~ 161 (259)
.+.+.+.++. ......+||+.|||.|.-+..|+++ +.+++++|+ +.+++.+.+ ..++|+
T Consensus 23 ~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 23 NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 4555555552 1455679999999999999999998 678999999 778877621 246899
Q ss_pred EEeCCCCC-CCC---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC-CCCchh
Q 041250 162 YVGGDMFK-AIS---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR-KKDYKS 227 (259)
Q Consensus 162 ~~~~d~~~-~~~---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~-~~~~~~ 227 (259)
+.++|||+ +.. +||+|+=+..|+-++++...+..+.+.+.|+| ||+++++....+.. ..+||+
T Consensus 101 ~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf 168 (218)
T PF05724_consen 101 IYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF 168 (218)
T ss_dssp EEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS-
T ss_pred EEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC
Confidence 99999999 322 59999999999999999999999999999999 89954444443333 234543
No 97
>PRK14967 putative methyltransferase; Provisional
Probab=99.00 E-value=4.7e-09 Score=87.50 Aligned_cols=103 Identities=16% Similarity=0.121 Sum_probs=76.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC--CccEEeehhhhc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PAYAVLLKWILL 184 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh 184 (259)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+..+ +||+|++..-.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455679999999999999998876 3348999999 788877665 23468899999987443 599999874222
Q ss_pred cCC-------------------hHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 185 DWN-------------------DEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 185 ~~~-------------------d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.-+ .+....+++++.+.|+| ||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 111 01235688999999999 99998865543
No 98
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.98 E-value=4.4e-09 Score=91.01 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=72.9
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILL 184 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh 184 (259)
....+|||+|||+|.++..+++. +..+++++|+ |.+++.+++ ...++.+...+.....+ +||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 34589999999999999888765 4458999999 888888776 34567777776443223 69999876433
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+....+++++.+.|+| ||++++....
T Consensus 236 ----~~l~~ll~~~~~~Lkp---gG~li~sgi~ 261 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKP---GGWLILSGIL 261 (288)
T ss_pred ----HHHHHHHHHHHHHcCC---CcEEEEEeCc
Confidence 2345789999999999 9998887754
No 99
>PRK14968 putative methyltransferase; Provisional
Probab=98.98 E-value=7.7e-09 Score=83.44 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=75.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCC-eEEEeCCCCCCCC--CccEEeehhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVN-LKYVGGDMFKAIS--PAYAVLLKWI 182 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~d~~~~~~--~~D~~~~~~v 182 (259)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ...+ +.++.+|+.++.+ .+|++++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45678999999999999999988 578999999 788887765 1223 8999999988544 4999987654
Q ss_pred hccCC-------------------hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 183 LLDWN-------------------DEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 183 lh~~~-------------------d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++..+ ......+++++.+.|+| ||.+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~ 149 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQS 149 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEc
Confidence 43211 12245689999999999 898877653
No 100
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.97 E-value=6.8e-09 Score=88.03 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=68.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCccEEeehhhhc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPAYAVLLKWILL 184 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh 184 (259)
.....+|||+|||+|.+++.+++..+. +++++|+ |.+++.|++ ..+++.+..+|. .||+|+.+..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~-- 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL-- 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc--
Confidence 345689999999999999987776443 6999999 888888876 224444443332 5999886532
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.+....+++++.+.|+| ||.+++.....
T Consensus 189 ---~~~~~~l~~~~~~~Lkp---gG~lilsgi~~ 216 (250)
T PRK00517 189 ---ANPLLELAPDLARLLKP---GGRLILSGILE 216 (250)
T ss_pred ---HHHHHHHHHHHHHhcCC---CcEEEEEECcH
Confidence 23345789999999999 99999876543
No 101
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.96 E-value=9.3e-09 Score=86.89 Aligned_cols=140 Identities=12% Similarity=0.071 Sum_probs=101.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC------CCCccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA------ISPAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~------~~~~D~~ 177 (259)
..+.+||||.||+|.+....+..+|. .++...|. |..++..++ ..+-++|..+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 45789999999999999999999998 68999998 777776665 445559999999983 2458999
Q ss_pred eehhhhccCChHHHH-HHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHH
Q 041250 178 LLKWILLDWNDEECV-KILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIF 256 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~-~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll 256 (259)
+.+-++-.++|.+.+ +-|+.+++++.| ||.++....-.++.-.-. ...+.+..--.-.--+.||..|..+|+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle~I----Ar~LtsHr~g~~WvMRrRsq~EmD~Lv 286 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLEMI----ARVLTSHRDGKAWVMRRRSQAEMDQLV 286 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchHHH----HHHHhcccCCCceEEEecCHHHHHHHH
Confidence 999999999997755 479999999999 888777664333322110 001111000000011779999999999
Q ss_pred hcC
Q 041250 257 ADS 259 (259)
Q Consensus 257 ~~a 259 (259)
++|
T Consensus 287 ~~a 289 (311)
T PF12147_consen 287 EAA 289 (311)
T ss_pred HHc
Confidence 875
No 102
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.96 E-value=1.2e-08 Score=87.04 Aligned_cols=112 Identities=10% Similarity=0.074 Sum_probs=76.1
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhh---ccc-C--CCCeEEEeCCCCC-C-CCC
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG---LES-D--LVNLKYVGGDMFK-A-ISP 173 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~-~--~~ri~~~~~d~~~-~-~~~ 173 (259)
.+..+++ --...+|+|||||.|.++.+++++.|. .++++|- +...-+ +++ . ..++.+.+.-+.+ + ...
T Consensus 106 rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 106 RLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 3445553 223579999999999999999999764 5999995 222222 222 2 2233344322222 2 225
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
||+|++--||+|..+. ...|+.+++.|+| ||.+++=..+++.+.
T Consensus 183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~ 226 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDE 226 (315)
T ss_pred cCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCC
Confidence 9999999999998774 5789999999999 887766666666544
No 103
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.95 E-value=4.6e-09 Score=97.51 Aligned_cols=96 Identities=15% Similarity=0.221 Sum_probs=75.1
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehhh---
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKWI--- 182 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~v--- 182 (259)
..+|||+|||+|.+++.+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+++..+ .||+|+++--
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 888888876 34689999999988543 5999998421
Q ss_pred -----------hccCC--------h--HHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 183 -----------LLDWN--------D--EECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 183 -----------lh~~~--------d--~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
..+.| + +.-.++++++.+.|+| ||.+++
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l 267 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL 267 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE
Confidence 11111 0 1235678889999999 887754
No 104
>PHA03411 putative methyltransferase; Provisional
Probab=98.95 E-value=5.7e-09 Score=88.44 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=78.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCC-C-CccEEeehhhhccCChHHH
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAI-S-PAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~-~-~~D~~~~~~vlh~~~d~~~ 191 (259)
..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++..++++++.+|+++.. . .||+|++...++..+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46899999999999999999888889999999 8999988876678999999999832 3 5999999887776543321
Q ss_pred ------------------HHHHHHHHHhcccCCCCcEEEEE
Q 041250 192 ------------------VKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 192 ------------------~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.+.++.....|+| +|.++++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~ 182 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA 182 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE
Confidence 3566777888999 7766655
No 105
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.94 E-value=1.2e-08 Score=84.42 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=73.9
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---Cc
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---PA 174 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~~ 174 (259)
++..+. ..+..+|||||||+|.++..+++... +++++|. +.+++.+++ ...++++..+|..+..+ .|
T Consensus 70 l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 70 MTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 344444 56678999999999999988777753 7999998 888887765 34579999999887433 59
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
|+|++...++.. .+.+.+.|+| ||++++.-
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCC---CcEEEEEE
Confidence 999998766544 3456788999 89887754
No 106
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=5.7e-09 Score=85.62 Aligned_cols=111 Identities=16% Similarity=0.287 Sum_probs=82.3
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------C------------
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------D------------ 156 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~------------ 156 (259)
+..++.+...+-.+..+|||||.+|.++..+++.+....++++|+ +..|..|++ .
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 334444443355678899999999999999999998888999999 777777765 0
Q ss_pred -----------------------CCCeEEEeCCCCC-CCCCccEEeeh----hhhccCChHHHHHHHHHHHHhcccCCCC
Q 041250 157 -----------------------LVNLKYVGGDMFK-AISPAYAVLLK----WILLDWNDEECVKILKKCKEAITRDGKK 208 (259)
Q Consensus 157 -----------------------~~ri~~~~~d~~~-~~~~~D~~~~~----~vlh~~~d~~~~~il~~~~~~L~p~~~g 208 (259)
..|..+...||.. ..|.||+|++- ||--+|.|+-.+++++++++.|.| |
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g 202 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G 202 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence 1133334445555 45679988754 344489999999999999999999 5
Q ss_pred cEEEEEee
Q 041250 209 RKVIIKDM 216 (259)
Q Consensus 209 g~lli~e~ 216 (259)
| ++|+|+
T Consensus 203 G-iLvvEP 209 (288)
T KOG2899|consen 203 G-ILVVEP 209 (288)
T ss_pred c-EEEEcC
Confidence 5 566775
No 107
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.93 E-value=5.4e-09 Score=85.24 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC---CCC--CccEEeehhhhccC
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AIS--PAYAVLLKWILLDW 186 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~~ 186 (259)
+...+|||||||+|.++..+++.. ..+++++|+ ++++..+++ .+++++.+|+.+ +.+ .||+|++.+++|+.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~--~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA--RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH--cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 345799999999999998887653 567899999 788877763 357888888865 233 49999999999999
Q ss_pred ChHHHHHHHHHHHHhccc
Q 041250 187 NDEECVKILKKCKEAITR 204 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p 204 (259)
++. .++|+++.+.+++
T Consensus 89 ~d~--~~~l~e~~r~~~~ 104 (194)
T TIGR02081 89 RNP--EEILDEMLRVGRH 104 (194)
T ss_pred cCH--HHHHHHHHHhCCe
Confidence 774 4688888776554
No 108
>PRK00811 spermidine synthase; Provisional
Probab=98.91 E-value=9e-09 Score=88.84 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=76.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------CCCCeEEEeCCCCC--CC--CCccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFK--AI--SPAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~--~~--~~~D~~ 177 (259)
+++.+||+||||.|..+.++++..+..+++++|+ +.+++.+++ ..+|++++.+|..+ .. ..||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999997645568999999 899998887 15799999999876 22 259999
Q ss_pred eehhhhccCChHH--HHHHHHHHHHhcccCCCCcEEEEE
Q 041250 178 LLKWILLDWNDEE--CVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 178 ~~~~vlh~~~d~~--~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
++...-+..+... ...+++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9864333222221 35789999999999 8876653
No 109
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.90 E-value=1.1e-08 Score=86.80 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=73.8
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCCCC-----CCccEEeehhhhc--
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFKAI-----SPAYAVLLKWILL-- 184 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~~~-----~~~D~~~~~~vlh-- 184 (259)
..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++ ...+++++.+|+++.. ..||+|++.--..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 899988886 2223689999998733 2599998764221
Q ss_pred ----cCCh------------------HHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 185 ----DWND------------------EECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 185 ----~~~d------------------~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
..++ +-..++++.+.+.|+| ||++++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~ 215 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE 215 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 1111 1134788888999999 8877654
No 110
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.3e-08 Score=87.50 Aligned_cols=100 Identities=23% Similarity=0.312 Sum_probs=78.4
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-CccEEeehh--hhcc--
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-PAYAVLLKW--ILLD-- 185 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~~~~~~--vlh~-- 185 (259)
+|+|+|||+|.+++.++++.|+.++++.|+ |.+++.|++ ...++.++.+|+|++.+ +||+|+++- +-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 799999999999999999999999999999 899988877 22777888889999766 699988873 2221
Q ss_pred ---------C--------C--hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 186 ---------W--------N--DEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 186 ---------~--------~--d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
. . -+-..+++.++.+.|+| |.++++|.....
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~----~g~l~le~g~~q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP----GGVLILEIGLTQ 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC----CcEEEEEECCCc
Confidence 0 0 12346788999999999 556777765444
No 111
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.87 E-value=1.6e-08 Score=82.02 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=71.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC---------CC--CccEEee
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA---------IS--PAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~--~~D~~~~ 179 (259)
.+...+|||+|||+|.++..+++++ +..+++++|+.+.. ...+++++.+|+.++ .+ ++|+|++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 4667899999999999999999887 66789999995432 235788999998762 23 4999997
Q ss_pred hhhhc---cCC------hHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 180 KWILL---DWN------DEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 180 ~~vlh---~~~------d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
....| .|. .+...++++++++.|+| ||++++.
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 54322 121 12246789999999999 8988875
No 112
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.87 E-value=1.2e-08 Score=81.74 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=66.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC---CCC--CccEEeehhhhcc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AIS--PAYAVLLKWILLD 185 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~ 185 (259)
.+...+|||+|||.|.++..|.+. .++++.++|+ ++.+..+. ...+.++++|+.+ .+| .||.|+++.+|..
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv--~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV--ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH--HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 455789999999999999888875 5899999999 55454443 4467899999987 355 4999999999988
Q ss_pred CChHHHHHHHHHHHHh
Q 041250 186 WNDEECVKILKKCKEA 201 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~ 201 (259)
.... .++|+++.|+
T Consensus 88 ~~~P--~~vL~EmlRV 101 (193)
T PF07021_consen 88 VRRP--DEVLEEMLRV 101 (193)
T ss_pred HhHH--HHHHHHHHHh
Confidence 8664 3678888655
No 113
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.83 E-value=5.9e-09 Score=84.88 Aligned_cols=100 Identities=8% Similarity=0.168 Sum_probs=72.6
Q ss_pred CCCeEEEecCCchHHHHHH----HHH----CC-CCeEEEeec-hHHHhhccc----------------------------
Q 041250 114 GLNSLVDVGGGTGTAAKAI----AKA----FP-KLECTCFDL-PHVVNGLES---------------------------- 155 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l----~~~----~p-~~~~~~~D~-~~~~~~a~~---------------------------- 155 (259)
+.-+|.-.||++|.=...+ .+. .+ ++++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999744333 331 12 468999999 889998876
Q ss_pred -----CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 156 -----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 156 -----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
...+|+|..+|+.+ +.+ ++|+|++++||-+++++...+++++++++|+| ||.|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEecC
Confidence 13689999999999 322 59999999999999999999999999999999 888887654
No 114
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.82 E-value=2.6e-08 Score=87.12 Aligned_cols=99 Identities=13% Similarity=0.237 Sum_probs=75.1
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---CC
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---SP 173 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~~ 173 (259)
+++.++ .++..+|||||||+|.++..+++..+. .+++++|. +++++.|++ ..+++.++.+|..+.. ..
T Consensus 72 ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 72 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 344444 566789999999999999999998764 57999998 888887765 3468999999987632 25
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
||+|++...+++.+ ..+.+.|+| ||++++..
T Consensus 150 fD~Ii~~~g~~~ip--------~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHhH--------HHHHHhcCC---CCEEEEEe
Confidence 99999876554433 345678999 89987754
No 115
>PTZ00146 fibrillarin; Provisional
Probab=98.81 E-value=6.4e-08 Score=82.91 Aligned_cols=95 Identities=9% Similarity=0.084 Sum_probs=72.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hH----HHhhcccCCCCeEEEeCCCCCCC------CCccEEee
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PH----VVNGLESDLVNLKYVGGDMFKAI------SPAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~ri~~~~~d~~~~~------~~~D~~~~ 179 (259)
+....+|||+|||+|.++..+++.. |.-+++.+|+ +. +++.++ ...+|.++.+|...+. +.+|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 5667899999999999999999986 4568999998 43 455554 3378999999987642 25899977
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
... .+ ++...++.++.+.|+| ||+++|.
T Consensus 209 Dva---~p-dq~~il~~na~r~LKp---GG~~vI~ 236 (293)
T PTZ00146 209 DVA---QP-DQARIVALNAQYFLKN---GGHFIIS 236 (293)
T ss_pred eCC---Cc-chHHHHHHHHHHhccC---CCEEEEE
Confidence 653 22 3445677789999999 9999884
No 116
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.81 E-value=2.9e-08 Score=79.10 Aligned_cols=89 Identities=17% Similarity=0.369 Sum_probs=65.7
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--Cc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~ 174 (259)
..+++.++ ..+..+|||+|||+|.++..++++ ..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .+
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 44566666 666779999999999999999998 468999999 778888776 24689999999998 555 37
Q ss_pred cEEeehhhhccCChHHHHHHH
Q 041250 175 YAVLLKWILLDWNDEECVKIL 195 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il 195 (259)
|.++.. ..++...+...+++
T Consensus 79 d~vi~n-~Py~~~~~~i~~~l 98 (169)
T smart00650 79 YKVVGN-LPYNISTPILFKLL 98 (169)
T ss_pred CEEEEC-CCcccHHHHHHHHH
Confidence 877654 44444433333333
No 117
>PLN02366 spermidine synthase
Probab=98.80 E-value=3.6e-08 Score=85.81 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=74.3
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---CCC--Ccc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS--PAY 175 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~~--~~D 175 (259)
.+++.+||+||||.|..+.++++. |. .+++++|+ +.+++.+++ ..+|++++.+|.++ ..+ .||
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 356789999999999999999865 65 47999999 778998887 14699999999764 232 599
Q ss_pred EEeehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 176 AVLLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 176 ~~~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+|++-..-+..+.. -...+++.+++.|+| ||.+++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEC
Confidence 99875433222221 135789999999999 8877553
No 118
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.78 E-value=4.1e-08 Score=84.20 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=76.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC--C-CC-CccEEe
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK--A-IS-PAYAVL 178 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~--~-~~-~~D~~~ 178 (259)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ ..+|++++.+|.++ . .+ .||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4466999999999999999988766678999999 888888876 13689999999876 1 22 599999
Q ss_pred ehhhhccCChHH--HHHHHHHHHHhcccCCCCcEEEEE
Q 041250 179 LKWILLDWNDEE--CVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 179 ~~~vlh~~~d~~--~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+...-+.-+... ....++++++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 875433222222 35789999999999 8887775
No 119
>PHA03412 putative methyltransferase; Provisional
Probab=98.77 E-value=5.5e-08 Score=80.73 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCeEEEecCCchHHHHHHHHHC---CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC-CccEEeehhhhccCC-
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWN- 187 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~- 187 (259)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|++...++.++.+|+.. +.. .||+|+.+--++...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 89999998866789999999987 433 599999987665332
Q ss_pred -h--------HHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 188 -D--------EECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 188 -d--------~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
+ .-...+++++.+.+++ |.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTFII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence 1 2234688888886666 65533
No 120
>PRK01581 speE spermidine synthase; Validated
Probab=98.77 E-value=5.5e-08 Score=85.56 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=76.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------CCCCeEEEeCCCCC--C-CC-Cc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFK--A-IS-PA 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~--~-~~-~~ 174 (259)
..++.+||+||||+|..+.++++..+..+++++|+ |.+++.|++ ..+|++++.+|..+ . .+ .|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 35578999999999999998887555568999999 889998884 25799999999987 2 22 59
Q ss_pred cEEeehhhhc---cCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 175 YAVLLKWILL---DWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 175 D~~~~~~vlh---~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
|+|++...-. ....-....+++.+++.|+| ||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9999873110 01112235789999999999 8887665
No 121
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.77 E-value=4.3e-08 Score=84.26 Aligned_cols=99 Identities=11% Similarity=0.193 Sum_probs=79.4
Q ss_pred CCCeEEEecCCchHHHHH----HHHHCC----CCeEEEeec-hHHHhhccc-----------------------------
Q 041250 114 GLNSLVDVGGGTGTAAKA----IAKAFP----KLECTCFDL-PHVVNGLES----------------------------- 155 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~----l~~~~p----~~~~~~~D~-~~~~~~a~~----------------------------- 155 (259)
+.-+|...||++|.=... +.+..+ ++++++.|+ +.+++.|++
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999974433 334332 467999999 888888875
Q ss_pred -------CCCCeEEEeCCCCC-CCC---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 156 -------DLVNLKYVGGDMFK-AIS---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 156 -------~~~ri~~~~~d~~~-~~~---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
...+|+|..+|..+ ++| +||+|++++++.+++++...+++++++++|+| ||.|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEeC
Confidence 01577899999998 443 59999999999999999999999999999999 89876655
No 122
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.76 E-value=2.7e-08 Score=78.41 Aligned_cols=100 Identities=19% Similarity=0.094 Sum_probs=74.5
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC--C-CccEEeehhhhc-
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI--S-PAYAVLLKWILL- 184 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~--~-~~D~~~~~~vlh- 184 (259)
.+|||+|||.|.++..|++.-=.-+.+++|. +.+++.|+. ..+.|+|++.|+++|. + +||+|+-.-.+.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999999743345789998 777777665 4556999999999952 3 589888765443
Q ss_pred -----cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 185 -----DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 185 -----~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
+-++....-.+..+.+.|+| ||.++|...-.
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN~ 184 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCNF 184 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCC---CcEEEEEecCc
Confidence 22333334467888888999 89888876543
No 123
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.76 E-value=2.8e-08 Score=78.58 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=62.6
Q ss_pred EEeec-hHHHhhccc--------CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCc
Q 041250 142 TCFDL-PHVVNGLES--------DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKR 209 (259)
Q Consensus 142 ~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg 209 (259)
+++|. ++|++.|++ ...+|+|+.+|..+ |.+ .||++++..++|+++|. .+.|++++++|+| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 47898 899988854 13479999999988 665 49999999999999864 5899999999999 99
Q ss_pred EEEEEeeeecCC
Q 041250 210 KVIIKDMIKENR 221 (259)
Q Consensus 210 ~lli~e~~~~~~ 221 (259)
+++|.|...++.
T Consensus 76 ~l~i~d~~~~~~ 87 (160)
T PLN02232 76 RVSILDFNKSNQ 87 (160)
T ss_pred EEEEEECCCCCh
Confidence 999999875543
No 124
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.76 E-value=1.1e-07 Score=83.86 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=76.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~v 182 (259)
+++..+|+|.|||+|.++++.+.. +.+++++|+ +.++..++. ..+.+.+..+|+.+ +.+ .+|+|++...
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 566779999999999999887664 678999999 888887665 23458899999988 553 5999998633
Q ss_pred hcc-------CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 183 LLD-------WNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 183 lh~-------~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
... ...+...++|+++++.|+| ||++++.-+
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~ 295 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVP 295 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEc
Confidence 211 1223346899999999999 999887654
No 125
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=6.8e-08 Score=82.86 Aligned_cols=108 Identities=21% Similarity=0.314 Sum_probs=73.6
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCC----eEEEeCCCCC-CC-
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVN----LKYVGGDMFK-AI- 171 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~r----i~~~~~d~~~-~~- 171 (259)
+.-.++.++....++.+++|+|||+|.++++.++... .+++++|+ |.+++.+++ .... +.....+..+ +.
T Consensus 149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~ 227 (300)
T COG2264 149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPEN 227 (300)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhccc
Confidence 3334445544446789999999999999999998743 36999999 888888876 2222 2233333333 22
Q ss_pred CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 172 SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 172 ~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
..||+|+.+ +|= +-.+++...+.+.++| ||++++.-..
T Consensus 228 ~~~DvIVAN-ILA----~vl~~La~~~~~~lkp---gg~lIlSGIl 265 (300)
T COG2264 228 GPFDVIVAN-ILA----EVLVELAPDIKRLLKP---GGRLILSGIL 265 (300)
T ss_pred CcccEEEeh-hhH----HHHHHHHHHHHHHcCC---CceEEEEeeh
Confidence 259988765 331 2345788999999999 8887776643
No 126
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.73 E-value=6.6e-08 Score=83.45 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=69.8
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCcc
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAY 175 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D 175 (259)
.++.+.....+..+|||||||+|.+++..++... -+++++|+ |.+++.|++ ..+++.+. ...+ ...+||
T Consensus 151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~d 227 (295)
T PF06325_consen 151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFD 227 (295)
T ss_dssp HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EE
T ss_pred HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCC
Confidence 3444332234567999999999999999998743 37999999 888888876 45677653 1111 224699
Q ss_pred EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
+|+.+ .-.+-...+...+.+.|+| ||.+++.-...
T Consensus 228 lvvAN-----I~~~vL~~l~~~~~~~l~~---~G~lIlSGIl~ 262 (295)
T PF06325_consen 228 LVVAN-----ILADVLLELAPDIASLLKP---GGYLILSGILE 262 (295)
T ss_dssp EEEEE-----S-HHHHHHHHHHCHHHEEE---EEEEEEEEEEG
T ss_pred EEEEC-----CCHHHHHHHHHHHHHhhCC---CCEEEEccccH
Confidence 98865 2224456788889999999 78777655443
No 127
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.72 E-value=5.6e-08 Score=79.99 Aligned_cols=101 Identities=14% Similarity=0.219 Sum_probs=74.8
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--- 172 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--- 172 (259)
.+++.++ +.+..+|||||||+|..+..+++.. +..+++.+|. +...+.|++ ...+|+++.+|....++
T Consensus 63 ~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 63 RMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred HHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence 3555666 7778999999999999999999874 5557899998 888888887 46699999999987544
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.||.|++.......|. .+.+.|++ ||++++--.
T Consensus 141 pfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~pi~ 173 (209)
T PF01135_consen 141 PFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAPIG 173 (209)
T ss_dssp SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEEES
T ss_pred CcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEEEc
Confidence 5999999887754443 35666899 898877443
No 128
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.71 E-value=2.3e-07 Score=78.87 Aligned_cols=137 Identities=9% Similarity=0.135 Sum_probs=98.7
Q ss_pred chhhcCchHHHHHHHHHHhcch-h---------hhHHHHHhccccc-CCCCeEEEecCCchH----HHHHHHHHCC----
Q 041250 77 EYAGDESKLNNFFNEAMASDAR-L---------ATSVMIQKCKNVF-EGLNSLVDVGGGTGT----AAKAIAKAFP---- 137 (259)
Q Consensus 77 ~~l~~~~~~~~~f~~~m~~~~~-~---------~~~~~~~~~~~~~-~~~~~vlDvGgG~G~----~~~~l~~~~p---- 137 (259)
..+..+++..+.|-.+|..... + ....+++.+-... .+.-+|.-+||++|. +++.+.+..|
T Consensus 48 ~~l~~~~~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~ 127 (268)
T COG1352 48 NLLESDSEELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAG 127 (268)
T ss_pred HHHhCCHHHHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccC
Confidence 3455667777777766663222 1 1122222221001 147799999999995 4555566675
Q ss_pred -CCeEEEeec-hHHHhhccc----------------------------------CCCCeEEEeCCCCCCC--C-CccEEe
Q 041250 138 -KLECTCFDL-PHVVNGLES----------------------------------DLVNLKYVGGDMFKAI--S-PAYAVL 178 (259)
Q Consensus 138 -~~~~~~~D~-~~~~~~a~~----------------------------------~~~ri~~~~~d~~~~~--~-~~D~~~ 178 (259)
.+++++.|+ ..+++.|+. ....|.|..+|.+++. + ++|+|+
T Consensus 128 ~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~If 207 (268)
T COG1352 128 FRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIF 207 (268)
T ss_pred CceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEE
Confidence 478999999 788888875 1247899999999943 4 499999
Q ss_pred ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+++||-+++.+...+++++.++.|+| ||.|++-..
T Consensus 208 CRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG~s 242 (268)
T COG1352 208 CRNVLIYFDEETQERILRRFADSLKP---GGLLFLGHS 242 (268)
T ss_pred EcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEccC
Confidence 99999999999999999999999999 898888654
No 129
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.70 E-value=4e-07 Score=76.44 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=75.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---------CCCc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---------ISPA 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---------~~~~ 174 (259)
..+..+|||||||+|.-+..+++..| +.+++.+|. ++.++.|++ ..++|+++.+|..+. .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45688999999999999999998765 679999999 888888876 457999999999762 1259
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
|++++-. ....-..++..+.+.|+| ||.|++-+
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~---GG~ii~dn 178 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKV---GGIIAFDN 178 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CeEEEEEc
Confidence 9998742 234445788999999999 77655433
No 130
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=1.9e-07 Score=85.22 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=79.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCC---C-C-CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---I-S-PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~---~-~-~~D~~~~~~ 181 (259)
.....+|||+|||+|..+..+++..++.+++++|+ +.++..+++ ..-+++++.+|..+. . + .||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45567999999999999999999988789999999 888888776 333578999999862 1 2 499998532
Q ss_pred h------hc-------cCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 182 I------LL-------DWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 182 v------lh-------~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
. +. .+..++ ..++|+++.+.|+| ||++++......
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~ 376 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSIL 376 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 1 11 122221 24799999999999 999988775443
No 131
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.69 E-value=8.8e-08 Score=84.16 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=73.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---------------CCCeEEEeCCCCCC-----C-
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---------------LVNLKYVGGDMFKA-----I- 171 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~ri~~~~~d~~~~-----~- 171 (259)
+..+|||+|||.|.-+.-..+..+ -.++++|+ +..++.|+++ .-...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 568999999999988888777643 26999999 7777777651 13556788888752 1
Q ss_pred -C--CccEEeehhhhccC--ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 172 -S--PAYAVLLKWILLDW--NDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 172 -~--~~D~~~~~~vlh~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+ .||+|.+...+|+. +.+.+..+|+++...|+| ||.++.+-+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEec
Confidence 2 59999999999974 567788899999999999 887776654
No 132
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.67 E-value=2.3e-07 Score=85.16 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=77.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---CC-CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---IS-PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~~-~~D~~~~~ 180 (259)
..+..+|||+|||+|..+..+++.. |+.+++++|+ +..++.+++ ...+++++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4556799999999999999999986 6789999999 888877765 335699999999762 33 59999874
Q ss_pred hhh------c-------cCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 181 WIL------L-------DWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 181 ~vl------h-------~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
--. . .++.++ ..++|+++.+.|+| ||+++......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 221 1 122222 24689999999999 99988665544
No 133
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.67 E-value=1.7e-07 Score=85.60 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=82.2
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--CCCeEEEeCCCCC-CC--C-
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--LVNLKYVGGDMFK-AI--S- 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~d~~~-~~--~- 172 (259)
+...++ .....+|||+|||+|..+..+++..|+.+++++|+ +..++.+++ . ..++.+..+|... +. +
T Consensus 230 ~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 230 VATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 344445 55568999999999999999999988789999999 788877765 1 2234557778765 22 2
Q ss_pred -CccEEeeh------hhhccCCh-------HH-------HHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 173 -PAYAVLLK------WILLDWND-------EE-------CVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 173 -~~D~~~~~------~vlh~~~d-------~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
.||.|++- .+++..++ ++ ..++|.++++.|+| ||+++.....+..
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~ 373 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLP 373 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 49999862 35554443 11 36799999999999 9999988876643
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.6e-07 Score=74.35 Aligned_cols=98 Identities=13% Similarity=0.199 Sum_probs=79.0
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---Cc
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---PA 174 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~~ 174 (259)
+++.++ ++...+||+||||+|..+.-+++..- +++.+++ ++..+.|++ ...+|.++.+|-..-+| .|
T Consensus 64 m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 64 MLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCc
Confidence 445555 77789999999999999999999754 8999998 888888887 45679999999999555 59
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
|.|+..-..-..|+. +.+.|+| ||++++-.-
T Consensus 140 D~I~Vtaaa~~vP~~--------Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 140 DRIIVTAAAPEVPEA--------LLDQLKP---GGRLVIPVG 170 (209)
T ss_pred CEEEEeeccCCCCHH--------HHHhccc---CCEEEEEEc
Confidence 999998777666652 4556899 999988765
No 135
>PRK03612 spermidine synthase; Provisional
Probab=98.64 E-value=1.6e-07 Score=87.64 Aligned_cols=99 Identities=17% Similarity=0.274 Sum_probs=75.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc------------CCCCeEEEeCCCCC---CCC-Cc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFK---AIS-PA 174 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~---~~~-~~ 174 (259)
+++.+|||||||+|..+.++++ +|. .+++++|+ |++++.+++ ..+|++++.+|.++ ..+ +|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999986 565 68999999 999998886 13699999999887 223 59
Q ss_pred cEEeehhhhccCCh---HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 175 YAVLLKWILLDWND---EECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 175 D~~~~~~vlh~~~d---~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
|+|++...-+..+. -...++++++++.|+| ||.+++.-
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEec
Confidence 99988743222111 1124689999999999 88876653
No 136
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.64 E-value=2.3e-07 Score=75.68 Aligned_cols=96 Identities=14% Similarity=0.261 Sum_probs=68.8
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC----CC--CccEEeehhhhc
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA----IS--PAYAVLLKWILL 184 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~----~~--~~D~~~~~~vlh 184 (259)
.+||||||.|.++..+++.+|+..++++|+ ...+..+.+ ...++.++.+|...- ++ ..|-+++.+-=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD- 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD- 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC-
Confidence 899999999999999999999999999998 555554433 789999999998871 22 35655554211
Q ss_pred cCChH-------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 185 DWNDE-------ECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 185 ~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
-|+.. -...+|+.+++.|+| ||.|.+..-
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEeC
Confidence 13221 124689999999999 898877654
No 137
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=4.2e-07 Score=83.39 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=78.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehh-
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKW- 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~- 181 (259)
.....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ...+|+++.+|..+..+ .||+|++--
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34557999999999999999988653 468999999 888887765 33579999999987323 599998621
Q ss_pred -----hh-------ccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 182 -----IL-------LDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 182 -----vl-------h~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
++ +.++.++ ..++|.++.+.|+| ||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 11 2233332 23689999999999 999888876554
No 138
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.63 E-value=4.5e-07 Score=76.51 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=81.8
Q ss_pred CCCeEEEecCCchH--HHHHHHH-HCCCCeEEEeec-hHHHhhccc---CCCC--eEEEeCCCCCC-----CC---C-cc
Q 041250 114 GLNSLVDVGGGTGT--AAKAIAK-AFPKLECTCFDL-PHVVNGLES---DLVN--LKYVGGDMFKA-----IS---P-AY 175 (259)
Q Consensus 114 ~~~~vlDvGgG~G~--~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~---~~~r--i~~~~~d~~~~-----~~---~-~D 175 (259)
+...+||||||--. ...++++ ..|+.+++-+|. |-++..++. ..++ ..++.+|+.+| .| . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999542 4555555 579999999999 888888887 3344 89999999984 12 1 23
Q ss_pred -----EEeehhhhccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCH
Q 041250 176 -----AVLLKWILLDWND-EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDE 249 (259)
Q Consensus 176 -----~~~~~~vlh~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~ 249 (259)
.+++..+||+.+| ++...+++.+++.|.| |+.|.|.....+.... ......+++-........||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~-----~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPE-----RAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHH-----HHHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHH-----HHHHHHHHHHcCCCCceecCH
Confidence 6888999999987 7788999999999999 9999888886533211 112233443333457789999
Q ss_pred HHHHHHHh
Q 041250 250 KEWAKIFA 257 (259)
Q Consensus 250 ~e~~~ll~ 257 (259)
+|+.++|.
T Consensus 220 ~ei~~~f~ 227 (267)
T PF04672_consen 220 EEIAAFFD 227 (267)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcC
Confidence 99999875
No 139
>PLN02672 methionine S-methyltransferase
Probab=98.59 E-value=2.9e-07 Score=91.32 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=75.0
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------------------CCCeEEEeCCCCCCCC
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------------------LVNLKYVGGDMFKAIS 172 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------------------~~ri~~~~~d~~~~~~ 172 (259)
..+|+|+|||+|.+++.+++++|+.+++++|+ |.+++.|++ . .+|++|+.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999999999999999999 888888765 1 2589999999998443
Q ss_pred ----CccEEeehh--hhcc----CC----------------------------h--HHHHHHHHHHHHhcccCCCCcEEE
Q 041250 173 ----PAYAVLLKW--ILLD----WN----------------------------D--EECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 173 ----~~D~~~~~~--vlh~----~~----------------------------d--~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
++|+|+.+- +... .+ | +-.++|++.+.+.|+| ||. +
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p---gG~-l 274 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP---MGI-M 274 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC---CCE-E
Confidence 489988763 2110 00 0 1126788888899999 775 5
Q ss_pred EEeee
Q 041250 213 IKDMI 217 (259)
Q Consensus 213 i~e~~ 217 (259)
++|..
T Consensus 275 ~lEiG 279 (1082)
T PLN02672 275 IFNMG 279 (1082)
T ss_pred EEEEC
Confidence 57764
No 140
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=6.2e-07 Score=82.03 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=79.5
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C----C-C-CccEE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A----I-S-PAYAV 177 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~----~-~-~~D~~ 177 (259)
.....+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ...+|+++.+|..+ + . + .||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 4556899999999999999999975 4568999998 788877765 34579999999876 3 1 1 49999
Q ss_pred eeh------hhhccCCh-------HH-------HHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 178 LLK------WILLDWND-------EE-------CVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 178 ~~~------~vlh~~~d-------~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
++- .+++..++ ++ ..++|+++.+.|+| ||+|+.....+.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi~ 388 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTLH 388 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 973 24443332 22 35899999999999 999888775543
No 141
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.56 E-value=3.2e-07 Score=75.25 Aligned_cols=112 Identities=14% Similarity=0.187 Sum_probs=68.7
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEEEeCC
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKYVGGD 166 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~d 166 (259)
..+++.+. +.....++|+|||.|......+...+=-+.+|+++ +...+.|+. ...++++..+|
T Consensus 32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 34566666 67788999999999999999888775445999998 655554432 35788999999
Q ss_pred CCC-C-----CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 167 MFK-A-----ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 167 ~~~-~-----~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
|.+ + +.++|+|++++.+ |+++... -|++....|++ |.+|+-...+.+..
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~-~L~~~~~~lk~---G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTC--FDPDLNL-ALAELLLELKP---GARIISTKPFCPRR 164 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TT--T-HHHHH-HHHHHHTTS-T---T-EEEESS-SS-TT
T ss_pred ccccHhHhhhhcCCCEEEEeccc--cCHHHHH-HHHHHHhcCCC---CCEEEECCCcCCCC
Confidence 998 3 2369999999876 6665444 44777788998 77777666655554
No 142
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.56 E-value=8.3e-07 Score=75.91 Aligned_cols=106 Identities=12% Similarity=0.183 Sum_probs=77.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CCCccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--ISPAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~~~D~~~~~~ 181 (259)
.....+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ...+++++.+|... + .+.||.|++--
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45567999999999999999998764 458999999 888877765 33678999999765 2 23599998632
Q ss_pred ------hh-------ccCChHHH-------HHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 182 ------IL-------LDWNDEEC-------VKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 182 ------vl-------h~~~d~~~-------~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
++ +.|.++.. .++|+++.+.|+| ||+|+.....+..
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~~ 204 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLEP 204 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence 11 12443322 4699999999999 8988766654443
No 143
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=7.9e-07 Score=81.18 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=78.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C-C-C-CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A-I-S-PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~-~-~-~~D~~~~~ 180 (259)
..+..+|||+|||+|..+..+++.. ++.+++.+|+ +..++.+++ ...+++++.+|..+ + . + .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4566799999999999999999876 5679999999 888887766 33568999999876 3 2 2 49999863
Q ss_pred h------hhc-------cCChH-------HHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 181 W------ILL-------DWNDE-------ECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 181 ~------vlh-------~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
- ++. .++.+ ...++|.++++.|+| ||.++.....+..
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~ 371 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTK 371 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCCh
Confidence 2 222 22222 225789999999999 8987777665543
No 144
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.54 E-value=6.2e-07 Score=76.42 Aligned_cols=82 Identities=16% Similarity=0.275 Sum_probs=63.6
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCCcc
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISPAY 175 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~~D 175 (259)
...+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++.+|
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 345566555 5667899999999999999999983 57999999 788887776 24789999999998 677788
Q ss_pred EEeehhhhccCC
Q 041250 176 AVLLKWILLDWN 187 (259)
Q Consensus 176 ~~~~~~vlh~~~ 187 (259)
.|+.+-. ++.+
T Consensus 94 ~Vv~NlP-y~i~ 104 (258)
T PRK14896 94 KVVSNLP-YQIS 104 (258)
T ss_pred EEEEcCC-cccC
Confidence 7766533 3444
No 145
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.54 E-value=3e-07 Score=75.66 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=69.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCC------CeEEEeCCCCCCC--C-CccEEeehhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLV------NLKYVGGDMFKAI--S-PAYAVLLKWI 182 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~------ri~~~~~d~~~~~--~-~~D~~~~~~v 182 (259)
.+...++|||||+|..++.++..+. ++|+.|. +.+++.+++... ..++...++.+-. + +.|+|++...
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3445899999999977777777654 5899999 899999886221 1222223333311 2 4999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+|-++-+ ++++.++++|++. ||.+.+..+.
T Consensus 110 ~HWFdle---~fy~~~~rvLRk~--Gg~iavW~Y~ 139 (261)
T KOG3010|consen 110 VHWFDLE---RFYKEAYRVLRKD--GGLIAVWNYN 139 (261)
T ss_pred HHhhchH---HHHHHHHHHcCCC--CCEEEEEEcc
Confidence 9966654 6899999999982 6677666553
No 146
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.53 E-value=3.6e-07 Score=78.46 Aligned_cols=69 Identities=16% Similarity=0.289 Sum_probs=55.8
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AISP 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~~ 173 (259)
...+++.++ .....+|||||||+|.++..++++.+ +++++|+ +.+++.+++ ..++++++.+|+.+ +.+.
T Consensus 31 ~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 31 LDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 344556555 56678999999999999999999976 7899999 888888876 23799999999988 5444
No 147
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.53 E-value=5.7e-07 Score=76.42 Aligned_cols=86 Identities=14% Similarity=0.241 Sum_probs=64.2
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCCcc
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISPAY 175 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~~D 175 (259)
...+++.++ ..+..+|||||||+|.++..++++.+. ++++|. +.+++.+++ ..++++++.+|+.+ +.+.+|
T Consensus 18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 345566666 666789999999999999999999864 888998 788877765 24789999999998 555555
Q ss_pred --EEeehhhhccCChHH
Q 041250 176 --AVLLKWILLDWNDEE 190 (259)
Q Consensus 176 --~~~~~~vlh~~~d~~ 190 (259)
.+++++.-++++.+.
T Consensus 94 ~~~~vvsNlPy~i~~~i 110 (253)
T TIGR00755 94 KQLKVVSNLPYNISSPL 110 (253)
T ss_pred CcceEEEcCChhhHHHH
Confidence 455555555555433
No 148
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.50 E-value=4.9e-07 Score=72.37 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=68.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc--------CCCCeEEEeCCCCCCC------C-CccE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFKAI------S-PAYA 176 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~------~-~~D~ 176 (259)
.....+||++|||+|..++.+++..+..+++..|.+++++..+. ...++++...|+.++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45568999999999999999999977789999999777776654 2578899998886621 2 4999
Q ss_pred EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
|+.+.++|+ ++....+++-+.+.++| +|.+++.-...
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 999999975 45567899999999999 77777776654
No 149
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2e-06 Score=71.63 Aligned_cols=118 Identities=15% Similarity=0.219 Sum_probs=94.8
Q ss_pred HHHhcchh----hhHHHHHhcccccCCCCeEEEecCCchHHHHHHHH-HCCCCeEEEeec-hHHHhhccc------CCCC
Q 041250 92 AMASDARL----ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAK-AFPKLECTCFDL-PHVVNGLES------DLVN 159 (259)
Q Consensus 92 ~m~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~------~~~r 159 (259)
.|...++. .+..|+...+ +....+|+|.|.|+|.++..|+. -.|..+++.+|. ++..+.|++ ..++
T Consensus 70 ~~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~ 147 (256)
T COG2519 70 SMKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDR 147 (256)
T ss_pred hCcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccc
Confidence 35555443 2456777777 88899999999999999999997 568889999998 888888877 5677
Q ss_pred eEEEeCCCCC-CCC-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 160 LKYVGGDMFK-AIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 160 i~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
+++..+|..+ ..+ .+|++++ |.++. ...+.++.++|+| ||.+.+.-+..+.-
T Consensus 148 v~~~~~Dv~~~~~~~~vDav~L-----Dmp~P--W~~le~~~~~Lkp---gg~~~~y~P~veQv 201 (256)
T COG2519 148 VTLKLGDVREGIDEEDVDAVFL-----DLPDP--WNVLEHVSDALKP---GGVVVVYSPTVEQV 201 (256)
T ss_pred eEEEeccccccccccccCEEEE-----cCCCh--HHHHHHHHHHhCC---CcEEEEEcCCHHHH
Confidence 9999999998 333 5998877 47764 5799999999999 99998888766653
No 150
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.45 E-value=2.1e-06 Score=69.65 Aligned_cols=125 Identities=16% Similarity=0.208 Sum_probs=73.4
Q ss_pred chhhcCchHHHHHHHHHH----hcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhh
Q 041250 77 EYAGDESKLNNFFNEAMA----SDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG 152 (259)
Q Consensus 77 ~~l~~~~~~~~~f~~~m~----~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 152 (259)
+.++++|+.-+.|+...+ .|...-...+++.+.. .++...|.|+|||.+.++..+.. ..++..+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---
Confidence 445678877666665444 3332233455555551 34567899999999999966542 357899997221
Q ss_pred cccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 153 LESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 153 a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
+=.++..|+.. |++ ..|+++++-.|---+ -...++++.|+|+| ||.|.|.|....-
T Consensus 105 ------n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~---~G~L~IAEV~SRf 163 (219)
T PF05148_consen 105 ------NPRVTACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKP---GGILKIAEVKSRF 163 (219)
T ss_dssp ------STTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEGGG-
T ss_pred ------CCCEEEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheecc---CcEEEEEEecccC
Confidence 22466789977 776 389999887774322 35789999999999 9999999985443
No 151
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.44 E-value=1.5e-08 Score=63.65 Aligned_cols=45 Identities=42% Similarity=0.696 Sum_probs=35.9
Q ss_pred CHHHHHHHcCcchhhhcCC-CCCCHHHHHHHcC-CCcc---ccccceecc
Q 041250 1 MTLKCAFQLGIPDIINKHG-KPMTLNELVSALT-INLS---KTQCFFAQQ 45 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~-~~~t~~elA~~~~-~~~~---~l~~ll~~~ 45 (259)
|+|++|+||||||.|++.| ++.|++||+.++. .++. .+.|++|.+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L 50 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLL 50 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHh
Confidence 7999999999999999875 7999999999999 5444 456666654
No 152
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.2e-06 Score=69.84 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCCCccEEeehhhhc
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPAYAVLLKWILL 184 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~~~~~~vlh 184 (259)
..+|+|+|||+|.+++..+-..|. +++++|+ |++++.+++ ..+++.|+..|..+....+|.++++--+-
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG 119 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFG 119 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCc
Confidence 568999999999999998888664 7999999 999998887 56799999999987555566666664443
No 153
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.39 E-value=1.1e-06 Score=75.26 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=73.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeech-HHHhhccc-------CCC----CeEEEeCCCCCC---------
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDLP-HVVNGLES-------DLV----NLKYVGGDMFKA--------- 170 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~~-~~~~~a~~-------~~~----ri~~~~~d~~~~--------- 170 (259)
+....++|+|||-|.-++..-++ ++ .++++|+. --|++|++ ... .+.|+.+|-+..
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 45567999999999998888776 34 58999994 44577766 112 468899988751
Q ss_pred CCCccEEeehhhhcc-C-ChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 171 ISPAYAVLLKWILLD-W-NDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 171 ~~~~D~~~~~~vlh~-~-~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
.|.||++.+..++|+ | +.+.+..+|+|+++.|+| ||.++
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FI 234 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFI 234 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEE
Confidence 234999999999997 4 457788899999999999 77554
No 154
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.38 E-value=1.4e-06 Score=71.25 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=68.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC--C--CccEEeehhhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI--S--PAYAVLLKWIL 183 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~--~--~~D~~~~~~vl 183 (259)
...+|||+|||+|.++.+++.+.. .+++++|. +.+++.+++ ...+++++.+|+++.. . .||+|++.--.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 356899999999999998766653 58999998 888877766 3458999999998722 2 49999988765
Q ss_pred ccCChHHHHHHHHHHHH--hcccCCCCcEEEEEeeeec
Q 041250 184 LDWNDEECVKILKKCKE--AITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~~~ 219 (259)
+.--.+ .+++.+.. .+.| +.++++|....
T Consensus 132 ~~g~~~---~~l~~l~~~~~l~~----~~iv~ve~~~~ 162 (199)
T PRK10909 132 RKGLLE---ETINLLEDNGWLAD----EALIYVESEVE 162 (199)
T ss_pred CCChHH---HHHHHHHHCCCcCC----CcEEEEEecCC
Confidence 432223 34444444 3677 45677776443
No 155
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.38 E-value=2e-06 Score=74.52 Aligned_cols=89 Identities=16% Similarity=0.305 Sum_probs=66.7
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCC
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP 173 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~ 173 (259)
..+++... .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 44555555 6667899999999999999999874 46899999 888887775 25789999999988 6667
Q ss_pred ccEEeehhhhccCChHHHHHHH
Q 041250 174 AYAVLLKWILLDWNDEECVKIL 195 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il 195 (259)
+|.++. +.-++++.....++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 886654 555555554444444
No 156
>PRK04148 hypothetical protein; Provisional
Probab=98.36 E-value=8.3e-06 Score=61.97 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=70.5
Q ss_pred HHHHHhcccccCCCCeEEEecCCchH-HHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC----Ccc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGT-AAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS----PAY 175 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D 175 (259)
..+.+.+. ..+..+++|||||+|. ++..|.+. +..++++|+ |..++.+++ ..+.++.+|+|+|.+ ++|
T Consensus 6 ~~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 6 EFIAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCCHHHHhcCC
Confidence 34555554 3345789999999996 77777765 578999999 888887774 357899999999644 589
Q ss_pred EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
++...+ |..+...-+.++++... .-++|.-..
T Consensus 80 liysir-----pp~el~~~~~~la~~~~-----~~~~i~~l~ 111 (134)
T PRK04148 80 LIYSIR-----PPRDLQPFILELAKKIN-----VPLIIKPLS 111 (134)
T ss_pred EEEEeC-----CCHHHHHHHHHHHHHcC-----CCEEEEcCC
Confidence 888763 44555666666776664 445555443
No 157
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.36 E-value=4.1e-07 Score=74.36 Aligned_cols=129 Identities=9% Similarity=0.089 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHhcchhhhHHHH----HhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--C
Q 041250 84 KLNNFFNEAMASDARLATSVMI----QKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--D 156 (259)
Q Consensus 84 ~~~~~f~~~m~~~~~~~~~~~~----~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~ 156 (259)
.++++|.......-....|.++ ...+ .....++||+|||||..+.++...- -+.+++|+ ..|++.|.+ .
T Consensus 93 ~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~ 168 (287)
T COG4976 93 QYAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGL 168 (287)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccc
Confidence 3455666554433223333333 3333 3447899999999999999998874 35789999 788988876 2
Q ss_pred CCCeEEEeC-CCCC--CCCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 157 LVNLKYVGG-DMFK--AISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 157 ~~ri~~~~~-d~~~--~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.+....-.. +|.. ....+|+|....||-+..+- ..++.-+...|+| ||.+.+.--..+++
T Consensus 169 YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L--e~~~~~aa~~L~~---gGlfaFSvE~l~~~ 231 (287)
T COG4976 169 YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL--EGLFAGAAGLLAP---GGLFAFSVETLPDD 231 (287)
T ss_pred hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch--hhHHHHHHHhcCC---CceEEEEecccCCC
Confidence 333322222 2443 23369999999999998873 4799999999999 88775554444444
No 158
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.35 E-value=9.5e-07 Score=72.51 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=76.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC-------C--CCc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA-------I--SPA 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-------~--~~~ 174 (259)
..++.+||+||+++|.-+..+++..| +.+++.+|. |+..+.|++ ..+||+++.+|..+. . ..|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45688999999999999999999887 589999999 888888876 458999999999761 1 259
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
|+|++-. ...+-...+..+.+.|+| || ++|+|.++-
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~---gg-vii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP---GG-VIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE---EE-EEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC---Ce-EEEEccccc
Confidence 9999875 334456788889999999 45 566665543
No 159
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.33 E-value=8.1e-06 Score=63.69 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=94.1
Q ss_pred hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-C-----
Q 041250 99 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-A----- 170 (259)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~----- 170 (259)
+.++.+....+ +....-|+++|.|+|.+..+++++ .+.-..+.++. ++......+..+.++++.||.+. .
T Consensus 35 ~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 35 ILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence 44566666677 666778999999999999999886 35557888887 77777777777788899999987 2
Q ss_pred CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 171 IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 171 ~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.+ .+|.+++.--+-++|.....+||+.+...|++ ||.++-..+.
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 22 39999999988899999999999999999999 8988888775
No 160
>PLN02476 O-methyltransferase
Probab=98.32 E-value=6.6e-06 Score=70.42 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=77.5
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C------CCc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SPA 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~------~~~ 174 (259)
..+..+|||||+++|.-++.+++..| +.+++.+|. ++..+.|++ ..++|+++.||..+. . ..|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45688999999999999999999875 668999999 788888876 457999999998762 1 259
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
|++++-. +..+-...+..+.+.|+| ||.|++ |.++-
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGvIV~-DNvL~ 231 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGVIVM-DNVLW 231 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEE-ecCcc
Confidence 9988863 344567889999999999 666544 54443
No 161
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.32 E-value=1.6e-06 Score=70.50 Aligned_cols=104 Identities=11% Similarity=0.187 Sum_probs=71.9
Q ss_pred HHhcccccCC--CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC--CCC--CccEE
Q 041250 105 IQKCKNVFEG--LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK--AIS--PAYAV 177 (259)
Q Consensus 105 ~~~~~~~~~~--~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~--~~~--~~D~~ 177 (259)
++.++ +++ +.-|||||||+|.-+..+... +...+++|+ |.|++.|.+..-.-.++-+|+-+ |++ .||.+
T Consensus 41 LELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ 116 (270)
T KOG1541|consen 41 LELLA--LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGV 116 (270)
T ss_pred HHHhh--CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceE
Confidence 44444 444 788999999999988887765 467999999 99999998511113577788887 433 38977
Q ss_pred eehhhhc---------cCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 178 LLKWILL---------DWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 178 ~~~~vlh---------~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+....+. +.|......++..++..|++ |++-++.-
T Consensus 117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~Qf 160 (270)
T KOG1541|consen 117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR---GARAVLQF 160 (270)
T ss_pred EEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc---CceeEEEe
Confidence 7554432 11233345678889999998 78765543
No 162
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.32 E-value=4.2e-06 Score=71.91 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=75.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc---CCCCe--EEEeCCCCC---CCCCccEEeehhhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES---DLVNL--KYVGGDMFK---AISPAYAVLLKWIL 183 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---~~~ri--~~~~~d~~~---~~~~~D~~~~~~vl 183 (259)
.+.+|||+|+|.|..+.++...+|.+ +++++|. +.+++.++. ..... .....++.. +.+..|+|+++|+|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 35799999999999999999988866 5899998 788877766 11111 111122221 33357999999999
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
-..+++....+++++.+.+. +.|+|+|+--+..
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G 145 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG 145 (274)
T ss_pred hcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence 99998778888999988765 5899999754443
No 163
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.30 E-value=2.7e-06 Score=78.04 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=62.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC-----CC--CccEEe
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA-----IS--PAYAVL 178 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~-----~~--~~D~~~ 178 (259)
..+..+|||+|||+|.++..+++.. .+++++|. +++++.|++ ..++++++.+|+.+. ++ .||+++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4456799999999999999999885 58999999 889988876 346899999998752 22 489988
Q ss_pred ehhhhccCChHHHHHHHHHHHHhccc
Q 041250 179 LKWILLDWNDEECVKILKKCKEAITR 204 (259)
Q Consensus 179 ~~~vlh~~~d~~~~~il~~~~~~L~p 204 (259)
+.---. ....+++.+.+ ++|
T Consensus 373 ~dPPr~-----g~~~~~~~l~~-~~~ 392 (443)
T PRK13168 373 LDPPRA-----GAAEVMQALAK-LGP 392 (443)
T ss_pred ECcCCc-----ChHHHHHHHHh-cCC
Confidence 753221 12244555544 577
No 164
>PLN02823 spermine synthase
Probab=98.28 E-value=5.1e-06 Score=73.21 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=73.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC--C-CC-CccEEe
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK--A-IS-PAYAVL 178 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~--~-~~-~~D~~~ 178 (259)
+++.+||-||||.|..+.++++..+..+++++|+ |.+++.+++ ..+|++++.+|.++ . .+ .||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4567999999999999999998666678999999 899999987 24799999999987 2 22 599999
Q ss_pred ehhhhccCC---hH--HHHHHHH-HHHHhcccCCCCcEEEE
Q 041250 179 LKWILLDWN---DE--ECVKILK-KCKEAITRDGKKRKVII 213 (259)
Q Consensus 179 ~~~vlh~~~---d~--~~~~il~-~~~~~L~p~~~gg~lli 213 (259)
+-- ...+. .. -...+++ .+++.|+| ||.+++
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 762 11110 00 1235787 88999999 786554
No 165
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.25 E-value=7.6e-06 Score=68.94 Aligned_cols=121 Identities=16% Similarity=0.214 Sum_probs=85.7
Q ss_pred HHHHHHHhcchhh----hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------
Q 041250 88 FFNEAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------ 155 (259)
Q Consensus 88 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------ 155 (259)
.|...|...++.. ...|+..++ +..+.+||+.|.|+|.++..|++. .|..++..+|. ++-.+.|++
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g 89 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG 89 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC
Confidence 3555555555532 345677777 888899999999999999999975 69999999998 788888776
Q ss_pred CCCCeEEEeCCCCC-CC-----CCccEEeehhhhccCChHHHHHHHHHHHHhc-ccCCCCcEEEEEeeeecC
Q 041250 156 DLVNLKYVGGDMFK-AI-----SPAYAVLLKWILLDWNDEECVKILKKCKEAI-TRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 156 ~~~ri~~~~~d~~~-~~-----~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L-~p~~~gg~lli~e~~~~~ 220 (259)
..++|++..+|..+ .+ ..+|.+++ |+|+. ...+..+.++| +| ||+|.+.-+.++.
T Consensus 90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~---gG~i~~fsP~ieQ 151 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDP--WEAIPHAKRALKKP---GGRICCFSPCIEQ 151 (247)
T ss_dssp CCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EE---EEEEEEEESSHHH
T ss_pred CCCCceeEecceecccccccccCcccEEEE-----eCCCH--HHHHHHHHHHHhcC---CceEEEECCCHHH
Confidence 56799999999975 23 24898776 46654 36789999999 88 8999888766554
No 166
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.23 E-value=9.1e-06 Score=67.65 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=68.8
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC-CCeEEEeCCCCC--C--CC--CccEEeehhhh
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL-VNLKYVGGDMFK--A--IS--PAYAVLLKWIL 183 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~-~ri~~~~~d~~~--~--~~--~~D~~~~~~vl 183 (259)
..+||||||.|.+...+++++|+..++++++ ...+..+.+ .. .++.++++|..+ + .+ ..|-|.+...
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 5899999999999999999999999999998 444433332 33 499999999877 2 22 3455544321
Q ss_pred ccCChH-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 184 LDWNDE-------ECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 184 h~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
--|+.. -....|+.+++.|+| ||.|.+..
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 013311 124689999999999 99887765
No 167
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.23 E-value=8.7e-06 Score=67.12 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=81.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEe-CCCCC--C---CCCccEE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVG-GDMFK--A---ISPAYAV 177 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~-~d~~~--~---~~~~D~~ 177 (259)
..+.++||+||.+.|.-++.++...| +.+.|.+|+ |+..+.|++ ..++|+.+. +|..+ . .+.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 889999999 899999987 567799888 58776 2 2359999
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
++-. ...+-...|..+.+.|+| |.++|+|.++...
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~----GGliv~DNvl~~G 171 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRP----GGLIVADNVLFGG 171 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence 8864 333345789999999999 4566777766654
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.21 E-value=5.4e-06 Score=72.48 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=59.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEe----CCCCCCC--C--CccEE
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVG----GDMFKAI--S--PAYAV 177 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~----~d~~~~~--~--~~D~~ 177 (259)
...++||||||+|.+...++.+.++.+++++|+ +.+++.|++ ..++|++.. .+++... + .||++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457899999999999989998989999999999 888888886 246888864 2444421 2 59999
Q ss_pred eehhhhccCChH
Q 041250 178 LLKWILLDWNDE 189 (259)
Q Consensus 178 ~~~~vlh~~~d~ 189 (259)
+++--+|.-..+
T Consensus 194 vcNPPf~~s~~e 205 (321)
T PRK11727 194 LCNPPFHASAAE 205 (321)
T ss_pred EeCCCCcCcchh
Confidence 999888865544
No 169
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.21 E-value=6e-06 Score=75.50 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=64.7
Q ss_pred CCeEEEecCCchHHHHHHHHHC----CCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAF----PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKW 181 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~ 181 (259)
...|+|||||+|-++...+++. ...++..++- |.++...++ -.++|+++.+|+.+ ..| ++|+++.-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 5789999999999998776653 4568999997 544433321 46899999999999 666 699888766
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
.=.....|-....|....+-|+| +|.+
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp---~Gi~ 293 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKP---DGIM 293 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEE---EEEE
T ss_pred cCCccccccCHHHHHHHHhhcCC---CCEE
Confidence 54434445566778888889999 6644
No 170
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.21 E-value=6.7e-06 Score=79.57 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=72.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEeCCCCCC---CC-CccEEeehh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA---IS-PAYAVLLKW 181 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~---~~-~~D~~~~~~ 181 (259)
+..+|||+|||+|.++..+++. ...+++.+|+ +.+++.+++ .. ++++++.+|.++. .+ .||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 3579999999999999999986 3347999999 888888887 22 5899999998872 23 599999853
Q ss_pred hhc--------cCC-hHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 182 ILL--------DWN-DEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 182 vlh--------~~~-d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
--. .+. ...-..+++.+.+.|+| ||.+++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 210 011 12235688889999999 88776653
No 171
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.19 E-value=7.8e-06 Score=70.46 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=75.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccC
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDW 186 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~ 186 (259)
.+.|||||||+|.++.-.+++. .-++..++-++|.+-|++ ..+||.+++|-..+ ++| ++|+++.-..-+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 4679999999999998888774 337889998999888887 68999999999999 888 59998877655555
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
-+|...+-.-.+++-|+| .|+.+
T Consensus 257 ~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcCC---CCccc
Confidence 556555555567789999 78764
No 172
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.19 E-value=1.1e-05 Score=72.88 Aligned_cols=100 Identities=10% Similarity=-0.019 Sum_probs=72.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEeCCCCCC---C---C-CccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA---I---S-PAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~---~---~-~~D~~ 177 (259)
.+..+|||+|||+|.+++..+.. +..+++.+|+ +.+++.+++ .. ++++++.+|.++. . . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 34678999999999998876643 3458999999 888888876 22 4899999999872 1 2 59999
Q ss_pred eehhhhccCChH-------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 178 LLKWILLDWNDE-------ECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 178 ~~~~vlh~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++.--...-+.. .-..+++.+.+.|+| ||.|+.+..
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~sc 340 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSC 340 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 987432111111 123456677889999 898888765
No 173
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.17 E-value=1.1e-05 Score=69.28 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=77.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---CCC-CccEEe
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS-PAYAVL 178 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~~-~~D~~~ 178 (259)
+++.+||=||||.|..+.++++-.+--+++.+|+ |.+++.+++ ..+|++.+.+|-.+ ..+ +||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4457999999999999999999988889999999 999999988 25899999999987 234 599998
Q ss_pred ehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 179 LKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 179 ~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+-..=..-+.+ -....++.++++|++ +|.++..
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 76432211100 024789999999999 7766555
No 174
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.17 E-value=4.7e-06 Score=70.45 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=74.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---C-CC-CccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---A-IS-PAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~-~~-~~D~~ 177 (259)
+++.+||=||+|.|..+.++++..+-.+++++|+ |.+++.+++ ..+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4688999999999999999987666678999999 899999887 25799999999876 2 23 59999
Q ss_pred eehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 178 LLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 178 ~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
++-..=-..+.. -....++.+++.|+| +|.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 874322111111 135789999999999 77766655
No 175
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=6.5e-06 Score=66.53 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=70.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhccc---------------CCCCeEEEeCCCCCC---
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES---------------DLVNLKYVGGDMFKA--- 170 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---------------~~~ri~~~~~d~~~~--- 170 (259)
+....+.||||+|+|.++..++.. -|....+++|. |++++.+++ ...++.++.||-..-
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 566789999999999999998864 24444589998 999988776 246888999999883
Q ss_pred CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 171 ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 171 ~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
..+||.|.... .+.++.+++.+.|+| ||+++|-
T Consensus 160 ~a~YDaIhvGA--------aa~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGA--------AASELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred cCCcceEEEcc--------CccccHHHHHHhhcc---CCeEEEe
Confidence 33699988772 234677788888999 8988774
No 176
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.12 E-value=9.3e-06 Score=70.56 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=70.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh 184 (259)
+.++|||||||+|.++.--+++. ..++.++|-+++++.|.+ ..+.|+++.|...+ .+| +.|+++.-|.=|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 36789999999999999999887 558999999888888876 56779999998887 555 699999888665
Q ss_pred cCChHH-HHHHHHHHHHhcccCCCCcEEE
Q 041250 185 DWNDEE-CVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 185 ~~~d~~-~~~il~~~~~~L~p~~~gg~ll 212 (259)
..--|. ...+|-.==+-|+| ||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 543222 22233322246888 77554
No 177
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.12 E-value=1.7e-05 Score=69.63 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=54.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC-CccEEeehhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-PAYAVLLKWI 182 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-~~D~~~~~~v 182 (259)
...+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..++++|+.+|+.+ . .. .+|++++.--
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 3579999999999999999985 468999999 888888876 33689999999976 2 22 4899887743
No 178
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=3.8e-05 Score=64.58 Aligned_cols=101 Identities=11% Similarity=0.115 Sum_probs=71.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeC----CCCCCCC----CccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGG----DMFKAIS----PAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~----d~~~~~~----~~D~~ 177 (259)
.....++|+|||+|..+..++...|+.+++.+|. +.++..|.+ ..+|+..+.. |.+.+.+ ..|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3455899999999999999999999999999999 666766655 6789988854 4444433 47877
Q ss_pred eehh--hhccC----------------------ChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 178 LLKW--ILLDW----------------------NDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 178 ~~~~--vlh~~----------------------~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+.+- +.|+= ..+....++.-+.+.|+| ||.+ ..|..
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~---gg~~-~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP---GGFE-QLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc---CCeE-EEEec
Confidence 7662 33321 012235667777889999 6654 44543
No 179
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.09 E-value=2.1e-05 Score=66.40 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=76.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C-------CC
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I-------SP 173 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~-------~~ 173 (259)
..+..+||+||+++|.-+..+++.. |+.+++.+|. ++..+.|++ ..++|+++.||..+ + . ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 4567899999999999999999986 5779999998 777787776 46899999999876 2 1 35
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
||++++-.- .+.-...+..+.+.|+| || ++|+|.++-
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~---GG-viv~DNvl~ 193 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKV---GG-VIGYDNTLW 193 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCC---Ce-EEEEcCCCC
Confidence 999988742 33345778888899999 55 566665543
No 180
>PRK00536 speE spermidine synthase; Provisional
Probab=98.09 E-value=2.3e-05 Score=66.63 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=69.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCCCC-CCccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFKAI-SPAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~~~-~~~D~~~~~ 180 (259)
.+++++||=||||.|..++++++- |. +++.+|+ +.|++.+++ ..+|++++.. +.+.. ..||+|++-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence 466899999999999999999986 54 9999999 889998887 4689998862 22222 369999976
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
.. .+ ....+.++++|+| ||.++.
T Consensus 147 s~----~~---~~fy~~~~~~L~~---~Gi~v~ 169 (262)
T PRK00536 147 QE----PD---IHKIDGLKRMLKE---DGVFIS 169 (262)
T ss_pred CC----CC---hHHHHHHHHhcCC---CcEEEE
Confidence 42 22 3578999999999 776554
No 181
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.08 E-value=4.5e-05 Score=63.66 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=83.1
Q ss_pred hhhcCchHHHHHHHHHHh----cchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhc
Q 041250 78 YAGDESKLNNFFNEAMAS----DARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGL 153 (259)
Q Consensus 78 ~l~~~~~~~~~f~~~m~~----~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 153 (259)
.+..+|..-+.|++.... |...-...|++.+. ..++...|-|+|||-+.++. .- .-++..+|+-.
T Consensus 141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~----~~-~~kV~SfDL~a----- 209 (325)
T KOG3045|consen 141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS----SE-RHKVHSFDLVA----- 209 (325)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh----cc-ccceeeeeeec-----
Confidence 456677766666665543 22223455666666 23667889999999999887 11 23588888732
Q ss_pred ccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 154 ESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 154 ~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.+-.++..|+.. |.+ ..|+++++-.|--- + ....++++.|+|+| ||.++|.|.-.
T Consensus 210 ----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt-n--~~df~kEa~RiLk~---gG~l~IAEv~S 267 (325)
T KOG3045|consen 210 ----VNERVIACDMRNVPLEDESVDVAVFCLSLMGT-N--LADFIKEANRILKP---GGLLYIAEVKS 267 (325)
T ss_pred ----CCCceeeccccCCcCccCcccEEEeeHhhhcc-c--HHHHHHHHHHHhcc---CceEEEEehhh
Confidence 244567788888 666 48998888766422 2 35689999999999 99999999743
No 182
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.07 E-value=1.1e-05 Score=69.67 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=62.0
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-C--CCCeEEEeCCCCC--C-C-
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-D--LVNLKYVGGDMFK--A-I- 171 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-~--~~ri~~~~~d~~~--~-~- 171 (259)
...+++.+. ..+...+||++||.|..+..+++..| +.+++++|. |.+++.+++ . .+|++++.+||.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 455666666 55567999999999999999999986 789999999 999998886 2 3689999999986 1 1
Q ss_pred ---CCccEEeeh
Q 041250 172 ---SPAYAVLLK 180 (259)
Q Consensus 172 ---~~~D~~~~~ 180 (259)
+.+|.|++-
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 147776654
No 183
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.07 E-value=1.4e-05 Score=64.85 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=67.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C--C-C-ccEEeeh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I--S-P-AYAVLLK 180 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~--~-~-~D~~~~~ 180 (259)
..++||++||+|.++.+++.+... +++.+|. +.+++.+++ ..++++++.+|.++ . . . . +|+|++-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999999999999999998653 7999998 777776665 33589999999965 1 1 1 2 6777776
Q ss_pred hhhccCChHHHHHHHHHHHH--hcccCCCCcEEEEEeeeec
Q 041250 181 WILLDWNDEECVKILKKCKE--AITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~~~ 219 (259)
--...... .+++..+.. .+++ +.++|+|....
T Consensus 129 PPy~~~~~---~~~l~~l~~~~~l~~----~~iiv~E~~~~ 162 (189)
T TIGR00095 129 PPFFNGAL---QALLELCENNWILED----TVLIVVEEDRE 162 (189)
T ss_pred cCCCCCcH---HHHHHHHHHCCCCCC----CeEEEEEecCC
Confidence 54433222 334444433 4665 55788886543
No 184
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.02 E-value=4e-05 Score=64.31 Aligned_cols=96 Identities=16% Similarity=0.253 Sum_probs=68.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHH
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~ 191 (259)
+..++||||.|.|.....++..+.+ +.+-+. +.|....++ ..++.+..|-...-+ +||+|.+-++|-.-.+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~--kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P-- 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK--KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP-- 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh--CCCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence 4578999999999999999998876 566676 666655553 233444333233222 59999999999766554
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 192 VKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 192 ~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
..+|+.++++|+| +|++++. .++|
T Consensus 168 ~~LL~~i~~~l~p---~G~lilA-vVlP 191 (265)
T PF05219_consen 168 LTLLRDIRRALKP---NGRLILA-VVLP 191 (265)
T ss_pred HHHHHHHHHHhCC---CCEEEEE-EEec
Confidence 5899999999999 7876654 3444
No 185
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.00 E-value=2.7e-05 Score=65.42 Aligned_cols=75 Identities=20% Similarity=0.377 Sum_probs=62.5
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~ 172 (259)
...+++.-+ +.....||+||.|+|.+...++++ +.+++.+++ |.++...++ ...+.+++.+|+++ ++|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 455666666 788899999999999999999999 567899988 888876655 45799999999999 889
Q ss_pred CccEEee
Q 041250 173 PAYAVLL 179 (259)
Q Consensus 173 ~~D~~~~ 179 (259)
.+|.++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 8887665
No 186
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.96 E-value=5.5e-05 Score=66.16 Aligned_cols=98 Identities=12% Similarity=0.192 Sum_probs=72.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHC----CCCeEEEeec-hHHHhhccc-----CCCCeEE--EeCCCCCC---CC-----
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAF----PKLECTCFDL-PHVVNGLES-----DLVNLKY--VGGDMFKA---IS----- 172 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~-----~~~ri~~--~~~d~~~~---~~----- 172 (259)
.....|||+|||+|.=...|++.. ...+++.+|+ .+.++.+.+ ..+.+++ +.+||.++ .+
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 345689999999999877776654 3467999999 456665544 2355666 78899762 21
Q ss_pred -Ccc-EEeehhhhccCChHHHHHHHHHHHH-hcccCCCCcEEEE
Q 041250 173 -PAY-AVLLKWILLDWNDEECVKILKKCKE-AITRDGKKRKVII 213 (259)
Q Consensus 173 -~~D-~~~~~~vlh~~~d~~~~~il~~~~~-~L~p~~~gg~lli 213 (259)
... ++++...+.+++++++..+|+++++ .|+| |+.++|
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEE
Confidence 134 4556689999999999999999999 9999 677665
No 187
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.96 E-value=1.7e-05 Score=67.10 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=75.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh-
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND- 188 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d- 188 (259)
....++|+|||.|-+..- +|.+..++.|+ ...+..+++ .+-......|+.+ |.+ .+|..+...++|+|.-
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~-~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKR-SGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhcccccc-CCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 367899999999988754 68889999999 566666664 2222566678887 554 5999999999999975
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
+...++++++.+.++| ||..+|.-.-..
T Consensus 120 ~RR~~~l~e~~r~lrp---gg~~lvyvwa~~ 147 (293)
T KOG1331|consen 120 ERRERALEELLRVLRP---GGNALVYVWALE 147 (293)
T ss_pred HHHHHHHHHHHHHhcC---CCceEEEEehhh
Confidence 4456899999999999 898777655443
No 188
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.94 E-value=3.1e-05 Score=69.53 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=64.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---C-CCccEEeehhhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I-SPAYAVLLKWIL 183 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~-~~~D~~~~~~vl 183 (259)
...+|||+|||+|.++..++.. ..+++++|. +.+++.|++ ..++++|+.+|+.+. . .++|+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3468999999999999999865 468999999 888888776 335899999998762 2 248998887432
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
-.. ++ ++++.+. .++| ++++.++.
T Consensus 311 ~G~-~~---~~l~~l~-~~~p----~~ivyvsc 334 (374)
T TIGR02085 311 RGI-GK---ELCDYLS-QMAP----KFILYSSC 334 (374)
T ss_pred CCC-cH---HHHHHHH-hcCC----CeEEEEEe
Confidence 111 22 3444443 3677 44555553
No 189
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.90 E-value=5.1e-05 Score=70.72 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=70.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hH-HHhhccc----CCCCeEEEeCCCCC---CCC--CccEEeehhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PH-VVNGLES----DLVNLKYVGGDMFK---AIS--PAYAVLLKWI 182 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~~~~~~v 182 (259)
+...+||||||.|.++..+++++|+..++++|+ .. +....++ ...++.++.+|+.. .+| ..|.+++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999998 33 3332222 45788888887642 244 3666665532
Q ss_pred hccCChH-------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 183 LLDWNDE-------ECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 183 lh~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
= -|+.. -....|+.+++.|+| ||.|.+..-
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~TD 463 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFASD 463 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEcC
Confidence 1 13321 124689999999999 998877653
No 190
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.90 E-value=3.8e-05 Score=61.95 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=68.5
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-h---HHHhhccc--CCCCeEEEeCCCCC-CCC-CccEEeehhhhccCCh
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P---HVVNGLES--DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWND 188 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~--~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d 188 (259)
+++|||+|.|.-++-++-.+|+.+++.+|- . ..+..+.. ..++++++.+...+ ..+ .||+++.+.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999996 3 33333333 56789999998887 333 699999887542
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
...++.-+...+++ ||+++..-
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 34678888888999 89888774
No 191
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.89 E-value=2.6e-05 Score=71.38 Aligned_cols=92 Identities=20% Similarity=0.283 Sum_probs=64.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC-----C-C-CccEEe
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA-----I-S-PAYAVL 178 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~-----~-~-~~D~~~ 178 (259)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|++ ...+++|+.+|+.+. . . .+|+++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4556799999999999999999874 47999999 889988876 346899999998651 1 1 389888
Q ss_pred ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
+.-.=-.. + ..+++.+.+ ++| ++.+++
T Consensus 368 ~dPPr~G~-~---~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDPPRKGC-A---AEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECcCCCCC-C---HHHHHHHHh-cCC---CEEEEE
Confidence 64321111 1 245555443 777 554444
No 192
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=8.7e-06 Score=70.55 Aligned_cols=102 Identities=16% Similarity=0.256 Sum_probs=72.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCe-EEEeechHHHhhc----cc--CCCCeEEEeCCCCC---CCCCccEEeehhhhc
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDLPHVVNGL----ES--DLVNLKYVGGDMFK---AISPAYAVLLKWILL 184 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a----~~--~~~ri~~~~~d~~~---~~~~~D~~~~~~vlh 184 (259)
+.+|||||-|.|.-+.++-.-+|+++ +++++....+... .+ ...+..+-..|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 56799999999999999999999996 7777764333322 21 33445555666655 566667766666555
Q ss_pred cC----ChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 185 DW----NDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 185 ~~----~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
.+ ........+..+...+.| ||.|+|+|..-|
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp 229 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP 229 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence 43 444444588999999999 999999997443
No 193
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.81 E-value=0.00026 Score=59.09 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=63.3
Q ss_pred hHHHHHhccccc-CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhh-cccCCCCeE-EEeCCCCC-------
Q 041250 101 TSVMIQKCKNVF-EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG-LESDLVNLK-YVGGDMFK------- 169 (259)
Q Consensus 101 ~~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~ri~-~~~~d~~~------- 169 (259)
...+++.++ . ....++||+|||+|.++..+++. +..+++++|. +.++.. .+ ..+|+. +...|+..
T Consensus 63 L~~~l~~~~--~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~-~~~~v~~~~~~ni~~~~~~~~~ 138 (228)
T TIGR00478 63 LKEALEEFN--IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLR-QDERVKVLERTNIRYVTPADIF 138 (228)
T ss_pred HHHHHHhcC--CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHh-cCCCeeEeecCCcccCCHhHcC
Confidence 344555555 3 34578999999999999999987 3457999999 545543 33 344543 33334442
Q ss_pred -CCCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 170 -AISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 170 -~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+++.+|+.+++..+ +|..+.+.|+| +-.++++-+
T Consensus 139 ~d~~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~KP 173 (228)
T TIGR00478 139 PDFATFDVSFISLIS----------ILPELDLLLNP---NDLTLLFKP 173 (228)
T ss_pred CCceeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEcCh
Confidence 11247877776543 47788888887 445555543
No 194
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.74 E-value=2.5e-05 Score=70.97 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=68.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEee---c-hHHHhhcccCCCCeEEEeCCC---CCCCC--CccEEeehhhhc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFD---L-PHVVNGLESDLVNLKYVGGDM---FKAIS--PAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D---~-~~~~~~a~~~~~ri~~~~~d~---~~~~~--~~D~~~~~~vlh 184 (259)
+..++||||||.|.++..+..+ ++..+.+- - +..++.|-+. .|--+.+-+ .=|+| .||++.+++++.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR--Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER--GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc--CcchhhhhhccccccCCccchhhhhcccccc
Confidence 4568999999999999999998 45433332 2 2334444321 122222222 22677 499999999999
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
.|...+ -.+|-++-|+|+| ||.+++.-+-..
T Consensus 193 ~W~~~~-g~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred cchhcc-cceeehhhhhhcc---CceEEecCCccc
Confidence 998765 3589999999999 999888776555
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00023 Score=60.20 Aligned_cols=84 Identities=13% Similarity=0.315 Sum_probs=61.2
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCC--
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP-- 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~-- 173 (259)
...+++..+ .....+|++||+|.|.++..++++.. +++++++ +..++..++ ..++++++.+|+.+ ++++
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 456666666 66678999999999999999999965 4777777 666666555 46899999999999 6763
Q ss_pred -ccEEeehhhhccCChH
Q 041250 174 -AYAVLLKWILLDWNDE 189 (259)
Q Consensus 174 -~D~~~~~~vlh~~~d~ 189 (259)
++ .+.++.-++.+-.
T Consensus 95 ~~~-~vVaNlPY~Issp 110 (259)
T COG0030 95 QPY-KVVANLPYNISSP 110 (259)
T ss_pred CCC-EEEEcCCCcccHH
Confidence 33 3344444444443
No 196
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.71 E-value=0.00015 Score=59.27 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=67.1
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCC-CCC-----CccEEeehhhhccCCh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AIS-----PAYAVLLKWILLDWND 188 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~-----~~D~~~~~~vlh~~~d 188 (259)
.-++|||||-+...... .++-+.++-+|+.+. .=.+...||++ |.| .||+|.++-||.+.|+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC---------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 46999999986665544 355667999998331 22456789999 776 3999999999999986
Q ss_pred -HHHHHHHHHHHHhcccCCCCcE-----EEEEee
Q 041250 189 -EECVKILKKCKEAITRDGKKRK-----VIIKDM 216 (259)
Q Consensus 189 -~~~~~il~~~~~~L~p~~~gg~-----lli~e~ 216 (259)
.+.-++++++.+.|+| +|. |+|+-+
T Consensus 120 p~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLKP---PGLSLFPSLFLVLP 150 (219)
T ss_pred HHHHHHHHHHHHHHhCC---CCccCcceEEEEeC
Confidence 4556899999999999 788 777654
No 197
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.69 E-value=0.00017 Score=55.70 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=61.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHH----CCCCeEEEeec-hHHHhhccc--------CCCCeEEEeCCCCCC-CC-CccE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFKA-IS-PAYA 176 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~~-~~-~~D~ 176 (259)
..+..+|+|+|||.|.++..++.. .|+++++++|. +..++.+.+ ...++++..++.... .. ..++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999999982 37899999998 666666554 236777777776652 23 4677
Q ss_pred EeehhhhccCChHHHHHHHHHHHH
Q 041250 177 VLLKWILLDWNDEECVKILKKCKE 200 (259)
Q Consensus 177 ~~~~~vlh~~~d~~~~~il~~~~~ 200 (259)
++--|..-+.++ .+|+...+
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEEeecccchHH----HHHHHHHH
Confidence 777777777766 35555544
No 198
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.67 E-value=0.00016 Score=64.95 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=70.8
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC--C-CCCccEEeehhhhcc
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A-ISPAYAVLLKWILLD 185 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~-~~~~D~~~~~~vlh~ 185 (259)
..+|+|++||+|.+++.++.+.+..++++.|+ |.+++.+++ ..+++++..+|... . ...||+|++.-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 46899999999999999999887668999999 888888776 34567788899865 2 235999988642
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.. ...++..+.+.+++ ||.|+|.
T Consensus 135 -Gs--~~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence 11 23577887777888 8888887
No 199
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00032 Score=55.65 Aligned_cols=102 Identities=13% Similarity=0.301 Sum_probs=73.5
Q ss_pred CCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCC--CCccEEeehhhhc--
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAI--SPAYAVLLKWILL-- 184 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~--~~~D~~~~~~vlh-- 184 (259)
..-+++||||+|..+..+++.. |+......|+ |.+++...+ ...++..+..|+.+.+ .+.|+.+++.-.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999999998864 8888999999 888776544 5667788889998832 3588877764221
Q ss_pred ------------cCC-----hHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 185 ------------DWN-----DEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 185 ------------~~~-----d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
-|. .+-..++|..+-+.|.| .|.++++-.-.+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp---~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP---RGVFYLVALRAN 172 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc---CceEEeeehhhc
Confidence 121 12234677777788888 788887765443
No 200
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=0.0002 Score=58.98 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=66.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec----hHHHhhccc--CCCCeEEEeCCCCC--CCCC-ccEEeehhhhcc
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL----PHVVNGLES--DLVNLKYVGGDMFK--AISP-AYAVLLKWILLD 185 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~----~~~~~~a~~--~~~ri~~~~~d~~~--~~~~-~D~~~~~~vlh~ 185 (259)
..+++|||.|.|.-++-++-.+|+++++.+|- -..++.+.+ ..++++++.+...+ +.+. ||+++++.+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 58999999999999999999999999999996 244454444 66889999998877 2345 99998886442
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
...++.-+...+++ ||+++
T Consensus 147 -----L~~l~e~~~pllk~---~g~~~ 165 (215)
T COG0357 147 -----LNVLLELCLPLLKV---GGGFL 165 (215)
T ss_pred -----hHHHHHHHHHhccc---CCcch
Confidence 22345555556676 66654
No 201
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.61 E-value=0.00012 Score=59.06 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=66.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------CCCCeEEEeCCCCCCCCC-ccE---
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFKAISP-AYA--- 176 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~~~~~-~D~--- 176 (259)
....++|||||.|.+++.++-.+|+--++++++ -.|.+-.++ ...++.+...+.+.-.|. |--
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 346799999999999999999999999999998 333332222 346677777766664442 211
Q ss_pred ---EeehhhhccCChHH-----HHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 177 ---VLLKWILLDWNDEE-----CVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 177 ---~~~~~vlh~~~d~~-----~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.++..--|.|.... ..+++.+..-.|++ ||.++.+.-+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv 185 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDV 185 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeH
Confidence 22222233332211 24577788889999 8988877654
No 202
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.61 E-value=5.2e-05 Score=59.75 Aligned_cols=64 Identities=20% Similarity=0.364 Sum_probs=48.1
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---CC--C-ccEEeehh
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---IS--P-AYAVLLKW 181 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~~--~-~D~~~~~~ 181 (259)
.+|+|+.||.|..++++++.++ +++.+|+ |..++.++. ..+||.|+.+|+++. +. . +|+|+++-
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 3699999999999999999965 5899998 888888876 478999999999982 22 2 79999874
No 203
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.60 E-value=0.0003 Score=56.59 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=67.8
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCe---------EEEeec-hHHHhhccc------CCCCeEEEe
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLE---------CTCFDL-PHVVNGLES------DLVNLKYVG 164 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~------~~~ri~~~~ 164 (259)
+..++.... +.+...|+|-=||+|.++++.+...++.. +++.|+ +.++..+++ ....|.+..
T Consensus 17 A~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 17 AAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 334444445 56678999999999999999988777776 999999 888888776 456799999
Q ss_pred CCCCC-CCC--CccEEeehhhhcc-CCh-HHH----HHHHHHHHHhccc
Q 041250 165 GDMFK-AIS--PAYAVLLKWILLD-WND-EEC----VKILKKCKEAITR 204 (259)
Q Consensus 165 ~d~~~-~~~--~~D~~~~~~vlh~-~~d-~~~----~~il~~~~~~L~p 204 (259)
.|+.+ +.+ .+|+|+..--.-. ... .+. .++++.+.+++++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 99998 633 4898888754432 122 222 3456777777876
No 204
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.57 E-value=0.00057 Score=54.88 Aligned_cols=111 Identities=15% Similarity=0.221 Sum_probs=76.1
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCCCccE
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPAYA 176 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~ 176 (259)
..+.++=+ .-..++|||+|.|+|..+++.++.. ...++..|+ |..+...+- ..-.|.+...|..-+.+.+|+
T Consensus 69 R~i~~~Pe--tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl 145 (218)
T COG3897 69 RYIDDHPE--TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDL 145 (218)
T ss_pred HHHhcCcc--ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeE
Confidence 44444433 4456899999999999999988874 234666777 443333322 567888888888775557999
Q ss_pred EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
++.+.++++-+. +.++++ ..+.+... |..++|.++..+.
T Consensus 146 ~LagDlfy~~~~--a~~l~~-~~~~l~~~--g~~vlvgdp~R~~ 184 (218)
T COG3897 146 LLAGDLFYNHTE--ADRLIP-WKDRLAEA--GAAVLVGDPGRAY 184 (218)
T ss_pred EEeeceecCchH--HHHHHH-HHHHHHhC--CCEEEEeCCCCCC
Confidence 999999976654 457777 55555541 6777777765554
No 205
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.54 E-value=0.00033 Score=59.86 Aligned_cols=92 Identities=15% Similarity=0.314 Sum_probs=67.3
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCC--
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP-- 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~-- 173 (259)
...+++.++ ......|+|||+|.|.++..|++.. -++++++. +..++..++ ..++++++.+|+++ ..+.
T Consensus 19 ~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 456677776 6678999999999999999999997 67899998 777777666 46899999999998 4433
Q ss_pred --ccEEeehhhhccCChHHHHHHHHHHHH
Q 041250 174 --AYAVLLKWILLDWNDEECVKILKKCKE 200 (259)
Q Consensus 174 --~D~~~~~~vlh~~~d~~~~~il~~~~~ 200 (259)
-...++.+.-++.+ ..++.++..
T Consensus 95 ~~~~~~vv~NlPy~is----~~il~~ll~ 119 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNIS----SPILRKLLE 119 (262)
T ss_dssp SSSEEEEEEEETGTGH----HHHHHHHHH
T ss_pred cCCceEEEEEecccch----HHHHHHHhh
Confidence 34455555544433 345555555
No 206
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.51 E-value=0.0004 Score=57.03 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=59.5
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--C-ccEEeehhhhccCC
Q 041250 118 LVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--P-AYAVLLKWILLDWN 187 (259)
Q Consensus 118 vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~-~D~~~~~~vlh~~~ 187 (259)
|.||||-+|.+.+.|+++..--+++..|+ +.-++.|++ ..++|++..+|-++.++ . .|.+++.- +.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG----MG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG----MG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE----E-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec----CC
Confidence 68999999999999999987778999999 888888776 67899999999888544 3 78888774 33
Q ss_pred hHHHHHHHHHHHHhccc
Q 041250 188 DEECVKILKKCKEAITR 204 (259)
Q Consensus 188 d~~~~~il~~~~~~L~p 204 (259)
-....+||.+....+++
T Consensus 77 G~lI~~ILe~~~~~~~~ 93 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS 93 (205)
T ss_dssp HHHHHHHHHHTGGGGTT
T ss_pred HHHHHHHHHhhHHHhcc
Confidence 34455666665555543
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.48 E-value=0.0012 Score=64.12 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=76.8
Q ss_pred hHHHHHhccccc-CCCCeEEEecCCchHHHHHHHHHC----C--------------------------------------
Q 041250 101 TSVMIQKCKNVF-EGLNSLVDVGGGTGTAAKAIAKAF----P-------------------------------------- 137 (259)
Q Consensus 101 ~~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~----p-------------------------------------- 137 (259)
+..++.... + .+...++|-.||+|+++++.+... |
T Consensus 178 Aaa~l~~a~--w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 178 AAAILLRSG--WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHcC--CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 444555545 4 456899999999999999987631 1
Q ss_pred CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC----CccEEeehhhhc-cCC-hHHHHHHHHHHHHhcc
Q 041250 138 KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS----PAYAVLLKWILL-DWN-DEECVKILKKCKEAIT 203 (259)
Q Consensus 138 ~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~----~~D~~~~~~vlh-~~~-d~~~~~il~~~~~~L~ 203 (259)
..+++++|+ +.+++.|++ ..++|.+..+|+.+ +.+ .+|+|+.+--.- .+. ..+...+.+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899999 899998887 45689999999987 332 389888874332 233 3445566666666655
Q ss_pred ---cCCCCcEEEEEee
Q 041250 204 ---RDGKKRKVIIKDM 216 (259)
Q Consensus 204 ---p~~~gg~lli~e~ 216 (259)
+ |+++.++..
T Consensus 336 ~~~~---g~~~~llt~ 348 (702)
T PRK11783 336 QQFG---GWNAALFSS 348 (702)
T ss_pred HhCC---CCeEEEEeC
Confidence 6 777766554
No 208
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.45 E-value=0.00034 Score=62.38 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=44.8
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK 169 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~ 169 (259)
.++||++||+|.++..+++... +++++|. +++++.+++ ..++++|+.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4699999999999999998863 8999998 888888887 34589999999876
No 209
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.36 E-value=0.002 Score=48.60 Aligned_cols=97 Identities=18% Similarity=0.311 Sum_probs=66.0
Q ss_pred EEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhcccCC--CC---eEEEeCCCCC---CCC---CccEEeehhhhc
Q 041250 118 LVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLESDL--VN---LKYVGGDMFK---AIS---PAYAVLLKWILL 184 (259)
Q Consensus 118 vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~--~r---i~~~~~d~~~---~~~---~~D~~~~~~vlh 184 (259)
++|+|||+|... .+....+. ..++++|. +.++..++... .. +.+..+|... +.. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999987 44444443 47888898 55565543311 22 5788887764 333 48999 554444
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
++.+ ....++++.+.++| +|.+++........
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~~ 161 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDGL 161 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCCC
Confidence 4443 56889999999999 89888887765543
No 210
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0024 Score=52.10 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=76.3
Q ss_pred hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC-------
Q 041250 99 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA------- 170 (259)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~------- 170 (259)
+....+.+.+. .+.+..+|+|+|+-.|.++..+++.. +..+++++|+.++-. ...|.++.+|++.+
T Consensus 31 ~KL~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----~~~V~~iq~d~~~~~~~~~l~ 104 (205)
T COG0293 31 YKLLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----IPGVIFLQGDITDEDTLEKLL 104 (205)
T ss_pred HHHHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----CCCceEEeeeccCccHHHHHH
Confidence 34556777774 67888999999999999999998875 445699999855442 34599999999983
Q ss_pred --CC--CccEEeehh---hhccCC------hHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 171 --IS--PAYAVLLKW---ILLDWN------DEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 171 --~~--~~D~~~~~~---vlh~~~------d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.+ .+|+|+.-. +--.|. -.-+...+.-+...|+| ||.+++-.+--
T Consensus 105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~fqg 162 (205)
T COG0293 105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVFQG 162 (205)
T ss_pred HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEEeC
Confidence 12 258887332 222222 22234456666678999 88887777643
No 211
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00021 Score=54.57 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=51.6
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC--C-ccEEeehhhhc
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--P-AYAVLLKWILL 184 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~-~D~~~~~~vlh 184 (259)
+.++.|+|||.|.++. +-.+|.. .++++|+ |++++.+.+ ..-.+.+.+.|+.++.+ + ||..++..-+-
T Consensus 49 gkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred CcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 5789999999999994 4445555 5999999 999998776 34566888888888433 3 89888876543
No 212
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.33 E-value=0.0011 Score=56.68 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=57.5
Q ss_pred CCeEEEecCCchHHHHH-HHHH-CCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCC-C--CCCccEEeehh
Q 041250 115 LNSLVDVGGGTGTAAKA-IAKA-FPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK-A--ISPAYAVLLKW 181 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~-l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~-~--~~~~D~~~~~~ 181 (259)
+.+|+=||||.=-++.- ++++ .++..++++|+ |++++.+++ ...+++|+.+|..+ + ...||+|++..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999996655544 4544 36788999999 888888876 47899999999986 3 34799999886
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
..- .+.++-.+||.++.+.|+| |..|++=
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 553 3334456899999999999 6765554
No 213
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.33 E-value=0.00058 Score=57.14 Aligned_cols=124 Identities=16% Similarity=0.124 Sum_probs=79.5
Q ss_pred HHHHHhcchh--hhHHHHHhcccc---cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCC
Q 041250 90 NEAMASDARL--ATSVMIQKCKNV---FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVN 159 (259)
Q Consensus 90 ~~~m~~~~~~--~~~~~~~~~~~~---~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~r 159 (259)
.++|...+.. ..+.+-.-|+.. .+.+.+|+|||||.--++.-.....|+.++++.|+ +..++.... ...+
T Consensus 76 r~lL~~HaST~ERl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~ 155 (251)
T PF07091_consen 76 RRLLAGHASTRERLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP 155 (251)
T ss_dssp HHHHHTSHHHHCCGGGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C
T ss_pred HHHHhhccchhhhhhhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 3466654432 233333333322 34588999999999999999888889999999999 777776665 6788
Q ss_pred eEEEeCCCCCCCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 160 LKYVGGDMFKAIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 160 i~~~~~d~~~~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.+....|.....| .+|+.++--++|.....+. ..-.++.+.+.. -.++|..+..
T Consensus 156 ~~~~v~Dl~~~~~~~~~DlaLllK~lp~le~q~~-g~g~~ll~~~~~----~~~vVSfPtr 211 (251)
T PF07091_consen 156 HDARVRDLLSDPPKEPADLALLLKTLPCLERQRR-GAGLELLDALRS----PHVVVSFPTR 211 (251)
T ss_dssp EEEEEE-TTTSHTTSEESEEEEET-HHHHHHHST-THHHHHHHHSCE----SEEEEEEES-
T ss_pred cceeEeeeeccCCCCCcchhhHHHHHHHHHHHhc-chHHHHHHHhCC----CeEEEecccc
Confidence 8888899999544 4999999999998765442 333445555653 4556655443
No 214
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.28 E-value=0.00076 Score=53.84 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=74.7
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCCCccEEeehhhhccCCh
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISPAYAVLLKWILLDWND 188 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d 188 (259)
.++.|+|.|+|.++.-.+++ .-+++.++. |.....|++ ...+++++.+|..+ .+..+|++++-..=.-+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 68999999999999888777 347888888 777777776 56899999999998 7777999887654334456
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
++.+.+++.+.+-|+- .++++=.+
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~ 135 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQE 135 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHH
Confidence 6678899999888887 67765443
No 215
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.28 E-value=0.00072 Score=60.49 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=44.5
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK 169 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~ 169 (259)
.++||++||+|.++..+++... +++++|. +.+++.+++ ..++++|+.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988864 7999998 888888776 34589999999865
No 216
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00052 Score=56.65 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=71.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCC---CCC--CccEEe
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK---AIS--PAYAVL 178 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~---~~~--~~D~~~ 178 (259)
.+...+|||...|-|..+++.+++. ..+++-++- |.+++.|+- ...+|+.+.||..+ .++ +||+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3567899999999999999999984 237777776 899988875 23589999999988 344 488765
Q ss_pred ehh-hhccCChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 179 LKW-ILLDWNDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 179 ~~~-vlh~~~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
--- =+..-..-....+.+++++.|+| ||+++
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkr---gGrlF 242 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKR---GGRLF 242 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEE
Confidence 221 11111233456799999999999 89875
No 217
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.26 E-value=0.00098 Score=51.11 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=44.2
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK 169 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~ 169 (259)
+++|||||.|.++..+++.+|+.+++++|. |.+.+.+++ ...+++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 788777665 23568888776665
No 218
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.21 E-value=0.00042 Score=55.66 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=63.9
Q ss_pred hHHHHHhcccc-cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC--------
Q 041250 101 TSVMIQKCKNV-FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA-------- 170 (259)
Q Consensus 101 ~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~-------- 170 (259)
...+.+.++.. ..+..++||+||++|.++..++++. +..+++++|+...- ....+.++.+|++++
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----~~~~~~~i~~d~~~~~~~~~i~~ 83 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----PLQNVSFIQGDITNPENIKDIRK 83 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----S-TTEEBTTGGGEEEEHSHHGGG
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----cccceeeeecccchhhHHHhhhh
Confidence 34566666611 1245899999999999999999987 77899999985441 123445555555431
Q ss_pred -C----CCccEEeehhhhc---cC--C----hHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 171 -I----SPAYAVLLKWILL---DW--N----DEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 171 -~----~~~D~~~~~~vlh---~~--~----d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
. ..+|+|++--... ++ + -+.+...|.-+.+.|+| ||.+++--+.
T Consensus 84 ~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~~~ 141 (181)
T PF01728_consen 84 LLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKVFK 141 (181)
T ss_dssp SHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEESS
T ss_pred hccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEecc
Confidence 1 2488887654221 11 1 12233344445566899 8876665543
No 219
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.20 E-value=0.0009 Score=54.69 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=63.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC-C-CccEEeehhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-S-PAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-~-~~D~~~~~~v 182 (259)
.....+|+|.-||-|.+++.+++..+..+++..|+ |..++..++ ..++|..+.+|..+-. . .+|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 44568999999999999999999777788999999 888877665 5688999999998832 2 589777764
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
|.. +...|..+.+.+++ ||.+
T Consensus 178 ----p~~-~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 178 ----PES-SLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp ----TSS-GGGGHHHHHHHEEE---EEEE
T ss_pred ----hHH-HHHHHHHHHHHhcC---CcEE
Confidence 322 34578888888888 6643
No 220
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.17 E-value=0.0041 Score=57.40 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=73.5
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CCC-CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS-PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~-~~D~~~~~ 180 (259)
.....+|||+++|.|.=+..++....+ ..++..|+ +.-+...++ ...++.+...|... ..+ .||.|++-
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456689999999999999999998743 57899998 555544443 45678888888764 234 48988843
Q ss_pred h-------------hhccCChHHH-------HHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 181 W-------------ILLDWNDEEC-------VKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 181 ~-------------vlh~~~d~~~-------~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
- +...|+.++. .+||.++.+.|+| ||+|+-....
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCC
Confidence 2 2334554433 6899999999999 8887554443
No 221
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.10 E-value=0.00093 Score=55.03 Aligned_cols=92 Identities=13% Similarity=0.202 Sum_probs=67.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCe--EEEeCCCCC-CCC--CccEEeehhhhccC
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNL--KYVGGDMFK-AIS--PAYAVLLKWILLDW 186 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri--~~~~~d~~~-~~~--~~D~~~~~~vlh~~ 186 (259)
....++|||||-|.+...+..+. =-+.+..|. -.|++.++. ..+.| +...+|-.. ++. ++|+++.+..+| |
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH-W 149 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH-W 149 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-h
Confidence 35689999999999999999986 226899998 688888876 22333 344555433 444 599999999998 5
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEE
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
.++ ...-+.+++.+||| +|.+
T Consensus 150 ~Nd-LPg~m~~ck~~lKP---Dg~F 170 (325)
T KOG2940|consen 150 TND-LPGSMIQCKLALKP---DGLF 170 (325)
T ss_pred hcc-CchHHHHHHHhcCC---Cccc
Confidence 443 34567889999999 6743
No 222
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.09 E-value=0.0021 Score=56.38 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=71.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCC--C-CccEEeehhhhccCCh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAI--S-PAYAVLLKWILLDWND 188 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~--~-~~D~~~~~~vlh~~~d 188 (259)
+....++||+||++|.++..++++ +.+++++|..++-+... ..++|+...+|-+... + .+|++++--+. .+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KP 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEeccc---CH
Confidence 356789999999999999999998 56999999755444433 6789999999998833 3 48988877653 22
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK 223 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~ 223 (259)
. ++.+-+.+-+..+ -.+-.|+..-+|....
T Consensus 283 ~---rva~lm~~Wl~~g--~cr~aIfnLKlpmk~r 312 (357)
T PRK11760 283 A---RVAELMAQWLVNG--WCREAIFNLKLPMKKR 312 (357)
T ss_pred H---HHHHHHHHHHhcC--cccEEEEEEEcCCCCC
Confidence 2 4455555556541 2456777777765543
No 223
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.07 E-value=0.0049 Score=54.18 Aligned_cols=94 Identities=20% Similarity=0.362 Sum_probs=71.9
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc------------CCCCeEEEeCCCCCC-C--C-Cc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFKA-I--S-PA 174 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~~-~--~-~~ 174 (259)
++..++|=+|||.|..++++.+ ||+. +++.+|+ |.|++.++. ..+|++++..|.++- . . .|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5667999999999999999875 7865 6999999 999999884 468999999999982 2 1 48
Q ss_pred cEEeehhhhccCChH--------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 175 YAVLLKWILLDWNDE--------ECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 175 D~~~~~~vlh~~~d~--------~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
|.++.- ++|. ....+.+-+++.|++ +|.+++.-
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQa 407 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQA 407 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEec
Confidence 887764 3322 235677888899999 67655543
No 224
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.03 E-value=0.0014 Score=52.91 Aligned_cols=100 Identities=12% Similarity=0.092 Sum_probs=69.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C---C-CccEEee
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I---S-PAYAVLL 179 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~---~-~~D~~~~ 179 (259)
...++||+=||+|.++.+.+.+. .-+++.+|. +..+...++ ..+++..+..|.+.. . . .||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 36899999999999999999884 237999998 777776665 445799999997651 1 2 5999998
Q ss_pred hhhhccCChHHHHHHHHHHH--HhcccCCCCcEEEEEeeeecC
Q 041250 180 KWILLDWNDEECVKILKKCK--EAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~--~~L~p~~~gg~lli~e~~~~~ 220 (259)
---...... ..+++..+. ..|++ +.++|+|.....
T Consensus 121 DPPY~~~~~--~~~~l~~l~~~~~l~~----~~~ii~E~~~~~ 157 (183)
T PF03602_consen 121 DPPYAKGLY--YEELLELLAENNLLNE----DGLIIIEHSKKE 157 (183)
T ss_dssp --STTSCHH--HHHHHHHHHHTTSEEE----EEEEEEEEETTS
T ss_pred CCCcccchH--HHHHHHHHHHCCCCCC----CEEEEEEecCCC
Confidence 865543322 245666665 67887 668888886653
No 225
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.00 E-value=0.0034 Score=54.82 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=67.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHH-------CCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCC-C-CC--
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKA-------FPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK-A-IS-- 172 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~-~-~~-- 172 (259)
.....+|+|-+||+|.++.++.+. .+..++.++|+ +.++..++. ......+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345568999999999999998874 47789999999 666666553 23345688889887 2 22
Q ss_pred -CccEEeehhhh--ccCChH-----------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 -PAYAVLLKWIL--LDWNDE-----------------ECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 -~~D~~~~~~vl--h~~~d~-----------------~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.||+|+..--+ ..|.+. .-...+..+.+.|++ ||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEec
Confidence 59999887432 212111 112478889999999 898755544
No 226
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.99 E-value=0.0029 Score=54.66 Aligned_cols=102 Identities=23% Similarity=0.346 Sum_probs=75.8
Q ss_pred CCeEEEecCCchHHHHHHHHHC--------------------CCCeEEEeec---hHHHhhccc----------------
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAF--------------------PKLECTCFDL---PHVVNGLES---------------- 155 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~---------------- 155 (259)
..+||-||||.|.-..+++..+ |.++++.+|+ ..++.....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999998888887665 2368999998 566654332
Q ss_pred ------CCCCeEEEeCCCCC-CC---------CCccEEeehhhhccC---ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 156 ------DLVNLKYVGGDMFK-AI---------SPAYAVLLKWILLDW---NDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 156 ------~~~ri~~~~~d~~~-~~---------~~~D~~~~~~vlh~~---~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
..-+++|.+.|..+ .. |..++|.+-+.++.+ +-.+..++|+++-+.++| |..|+|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 12367899999987 22 136788877777653 456678999999999999 999999996
Q ss_pred eec
Q 041250 217 IKE 219 (259)
Q Consensus 217 ~~~ 219 (259)
--.
T Consensus 244 pGS 246 (315)
T PF11312_consen 244 PGS 246 (315)
T ss_pred CCC
Confidence 433
No 227
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.87 E-value=0.0052 Score=55.10 Aligned_cols=91 Identities=12% Similarity=0.167 Sum_probs=71.0
Q ss_pred CeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC--C--CCccEEeehhhhc
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA--I--SPAYAVLLKWILL 184 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~--~--~~~D~~~~~~vlh 184 (259)
.+|||.-||+|..+++++++.++. +++..|+ |.+++.+++ ...++++..+|...- . ..||+|.+-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 589999999999999999987654 6999999 888887776 335688999998862 2 2599998865 3
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
..+ ..++..+.+.+++ +|.|.+.-
T Consensus 124 Gs~----~~fld~al~~~~~---~glL~vTa 147 (374)
T TIGR00308 124 GTP----APFVDSAIQASAE---RGLLLVTA 147 (374)
T ss_pred CCc----HHHHHHHHHhccc---CCEEEEEe
Confidence 222 2578888888888 88888873
No 228
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.75 E-value=0.021 Score=46.79 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=78.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc----CCCCeEEEeCCCCC---CCC--CccEEeehhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----DLVNLKYVGGDMFK---AIS--PAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~~~~~~v 182 (259)
..++.+||.||-|-|.....+.++.|..+.|+---|.|....+. ..++|....|-..+ .+| .||-|+.-..
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 36789999999999999999999999988888878999988877 56888888886555 344 4887766532
Q ss_pred -hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 183 -LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 183 -lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
=| -++.....+.+.+.||| +|.+-.++..
T Consensus 179 ~e~---yEdl~~~hqh~~rLLkP---~gv~SyfNg~ 208 (271)
T KOG1709|consen 179 SEL---YEDLRHFHQHVVRLLKP---EGVFSYFNGL 208 (271)
T ss_pred hhH---HHHHHHHHHHHhhhcCC---CceEEEecCc
Confidence 11 15577889999999999 8887655543
No 229
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.75 E-value=0.0011 Score=48.20 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=40.1
Q ss_pred EEecCCchHHHHHHHHHCCCC---eEEEeec-h---HHHhhccc--CCCCeEEEeCCCCCC---CC--CccEEeehhhhc
Q 041250 119 VDVGGGTGTAAKAIAKAFPKL---ECTCFDL-P---HVVNGLES--DLVNLKYVGGDMFKA---IS--PAYAVLLKWILL 184 (259)
Q Consensus 119 lDvGgG~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~--~~~ri~~~~~d~~~~---~~--~~D~~~~~~vlh 184 (259)
|+||+..|..+..+++..+.. +++++|. + ...+..++ ..++++++.++..+. ++ ++|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988876544 5899998 4 23333333 567899999999762 22 588877653 22
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
. .+....-++.+.+.|+| ||.|++.|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 2 24566789999999999 77766655
No 230
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.72 E-value=0.0042 Score=55.86 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=77.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc-------CCCCeEEEeCCCCCC----CC---CccEEe
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKA----IS---PAYAVL 178 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~----~~---~~D~~~ 178 (259)
..+|||+=|=||.++...+.. +. ++|.+|+ ..+++.|++ ..++++|+.+|.|+- .. .||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 788999999999999999887 55 8999999 788888887 357899999999982 12 599999
Q ss_pred ehh-hhcc-----CC-hHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 179 LKW-ILLD-----WN-DEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 179 ~~~-vlh~-----~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
+-- .+-. |+ ..+-..++..+.+.|+| ||.++++.....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~~~~ 340 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSCSRH 340 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEecCCc
Confidence 864 2211 22 12235788889999999 899888876443
No 231
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.71 E-value=0.013 Score=49.94 Aligned_cols=102 Identities=19% Similarity=0.144 Sum_probs=77.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc--------CCCCeEEEeCCCCCCCC------C-----
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFKAIS------P----- 173 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~~------~----- 173 (259)
.+...||.+|||-=.....+... +++++.-+|+|++++.-++ ...+..++..|+...+. +
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34668999999998888877322 2578888888999875544 35789999999974221 2
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
.-++++--++.+++.+++.++|+.+.+...| |+ .++.|.+.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs-~l~~d~~~~ 200 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---GS-RLAFDYVRP 200 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---Cc-EEEEEeccc
Confidence 3367777899999999999999999998877 55 566777655
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.70 E-value=0.008 Score=56.49 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC--------CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC--------C
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPK--------LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA--------I 171 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~--------~ 171 (259)
...+|+|.|||+|.++.+++++.+. ..++++|+ +.++..++. ....+.....|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4568999999999999999887652 46899999 777777665 112455566665531 1
Q ss_pred CCccEEeehh
Q 041250 172 SPAYAVLLKW 181 (259)
Q Consensus 172 ~~~D~~~~~~ 181 (259)
++||+|+.+-
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 2589998874
No 233
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.64 E-value=0.0084 Score=52.12 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=55.7
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK 169 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~ 169 (259)
...+++.+. ..+...+||.=+|.|..+..++++.|+.+++++|. |.++..+++ ..+|++++.++|.+
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 455666665 55667999999999999999999988899999999 899988876 34589999888875
No 234
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.022 Score=50.78 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=69.7
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCC---------------------------------------eE
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKL---------------------------------------EC 141 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~---------------------------------------~~ 141 (259)
+..++..-. +.+...++|==||+|+++++.+...+++ .+
T Consensus 180 AaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 180 AAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 344555555 5555799999999999999998877532 26
Q ss_pred EEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhhhcc-CChHHHH-HHHHHHHHhc
Q 041250 142 TCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLD-WNDEECV-KILKKCKEAI 202 (259)
Q Consensus 142 ~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~-~~d~~~~-~il~~~~~~L 202 (259)
+++|+ +.+++.|+. ..+.|+|..+|+.. +-| .+|+++++--.-. +.++..+ ++.+.+.+.|
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence 79999 899988876 67999999999987 444 5898887743221 2333333 3555555444
No 235
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.61 E-value=0.017 Score=47.38 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=57.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC---CccEEeehh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS---PAYAVLLKW 181 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---~~D~~~~~~ 181 (259)
+...++.||||-++.+.+.+.+.+|...++..|+ +..++.|.+ ..+|++...+|-+.++. ..|++++..
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence 3445699999999999999999999999999998 766666655 78999999999988543 488887764
No 236
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.51 E-value=0.0037 Score=53.00 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=61.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhccc---------------------------------CCC
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLES---------------------------------DLV 158 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~---------------------------------~~~ 158 (259)
+..++||||+|.-.+- +..+.+..+ ++..|. +.-.+..++ ...
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4568999999996553 333334443 777776 433332111 012
Q ss_pred CeE-EEeCCCCCC--C------CC-ccEEeehhhhccC--ChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 159 NLK-YVGGDMFKA--I------SP-AYAVLLKWILLDW--NDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 159 ri~-~~~~d~~~~--~------~~-~D~~~~~~vlh~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.|+ ++..|.+++ . |+ +|++++..+|-.- +.++=.+.++++.+.|+| ||.|+++...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l 201 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVL 201 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEES
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEc
Confidence 344 567788872 2 33 9999999888754 345667899999999999 8988887763
No 237
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.40 E-value=0.024 Score=46.90 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=72.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC----C-----Cc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI----S-----PA 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~----~-----~~ 174 (259)
.-++++.+|||.=+|.-+.+++.+.|. .+++.+|+ ++..+.+.+ ...+|++++++..+.+ + .|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 455789999999999999999998875 47899998 444444443 6789999999888721 1 38
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
|.+++- +|.+... ..+.++.+.+++ || ++++|.++
T Consensus 151 DfaFvD----adK~nY~-~y~e~~l~Llr~---GG-vi~~DNvl 185 (237)
T KOG1663|consen 151 DFAFVD----ADKDNYS-NYYERLLRLLRV---GG-VIVVDNVL 185 (237)
T ss_pred eEEEEc----cchHHHH-HHHHHHHhhccc---cc-EEEEeccc
Confidence 888775 3555544 888999999999 55 55555543
No 238
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.03 Score=47.46 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=70.4
Q ss_pred hhcCchHHHHHHHHHHhcchh----hhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhh
Q 041250 79 AGDESKLNNFFNEAMASDARL----ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNG 152 (259)
Q Consensus 79 l~~~~~~~~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~ 152 (259)
++..||+| ..+|-..++. ....|+..++ .....+|++-|.|+|.++.++++.- |..+..-+|. ..-.++
T Consensus 71 L~PTpELW---Tl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~k 145 (314)
T KOG2915|consen 71 LQPTPELW---TLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEK 145 (314)
T ss_pred ecCChHHh---hhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHH
Confidence 44566654 4455544442 2345677777 7888999999999999999999975 8889999998 333344
Q ss_pred ccc------CCCCeEEEeCCCCC-CCC----CccEEeeh
Q 041250 153 LES------DLVNLKYVGGDMFK-AIS----PAYAVLLK 180 (259)
Q Consensus 153 a~~------~~~ri~~~~~d~~~-~~~----~~D~~~~~ 180 (259)
|.+ ..+++.+...|... .++ .+|.|++-
T Consensus 146 a~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFLD 184 (314)
T KOG2915|consen 146 ALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFLD 184 (314)
T ss_pred HHHHHHHhCCCcceEEEEeecccCCccccccccceEEEc
Confidence 444 68999999999987 333 38888764
No 239
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.32 E-value=0.0032 Score=45.67 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 146 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~ 146 (259)
.....||||||+|.+..-|.+. +.++.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4678999999999999999887 567899995
No 240
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.32 E-value=0.014 Score=50.81 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=74.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeechHHHhhccc--------CCCCeEEEeCCCCC-CCC------Ccc-
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFK-AIS------PAY- 175 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~-~~~------~~D- 175 (259)
.+...||-+|||-=.-+..+- +| ++++.-+|+|++++.=++ ...++++++.|+++ +++ +||
T Consensus 91 ~g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred hcccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence 446789999999766655543 33 477888888999986544 33599999999995 544 233
Q ss_pred ----EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 176 ----AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 176 ----~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++++-.++.+++.+++.++|.+|.....| |..++ .+.
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~~-~~~ 209 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRVA-FDY 209 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceEE-Eec
Confidence 67788899999999999999999999998 55544 444
No 241
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.27 E-value=0.032 Score=44.75 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=64.4
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeC-CCCCC---------CC
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGG-DMFKA---------IS 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~-d~~~~---------~~ 172 (259)
+-+.|. .+++..+|+|+||-.|.++.-..++. |+..+.++|+-... ....+.++.+ |+.+| .|
T Consensus 60 indKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 60 INDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----PPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred ehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----CCCCcccccccccCCHHHHHHHHHhCC
Confidence 344454 35778999999999999999988875 99999999984443 2234444444 55543 34
Q ss_pred --CccEEeehhhhccC----------ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 --PAYAVLLKWILLDW----------NDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 --~~D~~~~~~vlh~~----------~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
..|+|+.- ..|+- .-+-|..+|.-....+.| +|.+++--+
T Consensus 134 ~r~VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvcK~w 185 (232)
T KOG4589|consen 134 NRPVDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVCKLW 185 (232)
T ss_pred CCcccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEEEEe
Confidence 36766543 23322 223344445444456677 787665544
No 242
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.25 E-value=0.015 Score=50.56 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=51.7
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK 169 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~ 169 (259)
...+++.+. ..+...+||.=-|.|.++.++++++|+.+++++|. |.+++.+++ ..+|+.++.++|-+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 456666666 66778999999999999999999999999999999 999988876 35899999998865
No 243
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.22 E-value=0.034 Score=47.48 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=66.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeech-HH-------Hhh---ccc--------------------------
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HV-------VNG---LES-------------------------- 155 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~~-------~~~---a~~-------------------------- 155 (259)
++..+||-=|||-|.++.+++++ +..+.+-+.+ .| +.. ..+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 34578999999999999999999 5566776763 11 121 111
Q ss_pred ---------CCCCeEEEeCCCCC--CCC----CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250 156 ---------DLVNLKYVGGDMFK--AIS----PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 156 ---------~~~ri~~~~~d~~~--~~~----~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
...+++...|||.+ +.+ .+|+|+..+.+.- .......|..|.+.|+| ||..
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkp---gG~W 198 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKP---GGYW 198 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhcc---CCEE
Confidence 13578899999998 333 4999998855422 34478999999999999 7743
No 244
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.18 E-value=0.03 Score=45.16 Aligned_cols=108 Identities=11% Similarity=0.104 Sum_probs=71.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhh-----------ccc-CCCCeEEEeCCCCC-CCC-CccE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNG-----------LES-DLVNLKYVGGDMFK-AIS-PAYA 176 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~-----------a~~-~~~ri~~~~~d~~~-~~~-~~D~ 176 (259)
+....+|+|+=.|.|.+..-+.... |...+..+--.+.... +++ ...+++.+..+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 5678899999999999999888754 4444443321122111 111 34566666666655 333 4777
Q ss_pred Eeehh---hhcc--CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 177 VLLKW---ILLD--WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 177 ~~~~~---vlh~--~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
+.... .+|. +....+.++.+.++++||| ||.++|.|.......
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~ 173 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGS 173 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCC
Confidence 76644 4442 3456678999999999999 999999888766543
No 245
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.039 Score=46.22 Aligned_cols=141 Identities=18% Similarity=0.289 Sum_probs=93.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCC----CeEEEeech-HHHhh-ccc-----CCCCeEEEeCCCCCC---CCC---c
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPK----LECTCFDLP-HVVNG-LES-----DLVNLKYVGGDMFKA---ISP---A 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~D~~-~~~~~-a~~-----~~~ri~~~~~d~~~~---~~~---~ 174 (259)
..+..+++|+|.|+-.=...+...+.+ ++++-+|+. .++.. ++. ..-.+.-+++|+..+ .|+ =
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 456889999999999988888887766 789999994 44432 222 334455577888763 342 2
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE-eeeecCCCCCchhh---hhhhhhhhhhhhccC---cccc
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK-DMIKENRKKDYKSI---ETQLFFEMFMMVLLT---GTER 247 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~-e~~~~~~~~~~~~~---~~~~~~d~~m~~~~~---g~~r 247 (259)
=.+++...|-++++++|..+|..++.+|.| |-.+++- |...+...-...+. .....|+++|+...| |.-.
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGvDl~k~Ae~Le~AYdDp~gVTa~FnlNvLa~lNr~f~~nF 232 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGVDLRKPAERLEAAYDDPQGVTAEFNLNVLAHLNRVFGGNF 232 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEeccccCHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCC
Confidence 356677899999999999999999999999 6666554 33333222111110 124678899887632 2336
Q ss_pred CHHHHHHH
Q 041250 248 DEKEWAKI 255 (259)
Q Consensus 248 t~~e~~~l 255 (259)
...+|+.+
T Consensus 233 D~~dfeh~ 240 (321)
T COG4301 233 DVDDFEHV 240 (321)
T ss_pred CcchhhhH
Confidence 66666543
No 246
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.93 E-value=0.097 Score=46.12 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=75.5
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeC-CCCC-CCCC--ccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGG-DMFK-AISP--AYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~-d~~~-~~~~--~D~~~~~~ 181 (259)
...+..|+|==||||.++++..-- ++++++.|+ ..++..++. ..+...+... |... |+++ +|.|..-.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 455679999999999999998877 789999999 778887776 2344545555 8887 7774 88887653
Q ss_pred hhcc------CC-hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 182 ILLD------WN-DEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 182 vlh~------~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
-.-- -. ++--.++|..+.++|++ ||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 2211 11 45567899999999999 898887776
No 247
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.024 Score=43.61 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehhhhc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKWILL 184 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh 184 (259)
....+++|+|.|.|....+.++.. -...+++++ |-.+.-++- ...+.+|..-|+++ ++..+..+++.-+=.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH
Confidence 345799999999999998888764 346889998 555544332 57889999999998 666554433332111
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
-++ .+-.+++.-|+. +.+++-+-+-+|.
T Consensus 150 ~m~-----dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 150 VMP-----DLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred HHh-----hhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 122 233445555666 8999998887776
No 248
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=95.84 E-value=0.026 Score=45.41 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=62.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc----C----CCCeEEEeCCCCC-CC----C--C----
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----D----LVNLKYVGGDMFK-AI----S--P---- 173 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----~~ri~~~~~d~~~-~~----~--~---- 173 (259)
++...||-+|||-=.....+....++++++-+|+|++++.-++ . ..+.+++..|+.+ .+ . +
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 4455899999999999999999888999999999999976555 1 2346789999996 21 1 1
Q ss_pred -ccEEeehhhhccCChHHHHHHHHHHH
Q 041250 174 -AYAVLLKWILLDWNDEECVKILKKCK 199 (259)
Q Consensus 174 -~D~~~~~~vlh~~~d~~~~~il~~~~ 199 (259)
.-++++-.++.+++.+++..+|+.++
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 34677778999999999999998874
No 249
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.055 Score=43.56 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--CC-C---CccEEeehh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AI-S---PAYAVLLKW 181 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~-~---~~D~~~~~~ 181 (259)
..++||+=+|+|.++.+.+.+. ..+++.+|. ..+....++ ...+++++..|... +. + .||+|++--
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 5799999999999999999985 337899998 666665555 34889999998874 11 1 399999998
Q ss_pred hhcc-CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 182 ILLD-WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 182 vlh~-~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
-++. .-+.+..-++-.-...|+| +.++++|.-..
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 7772 1221212222223456898 55677777544
No 250
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.83 E-value=0.03 Score=48.33 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=70.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCCC------CCCccEEee
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKA------ISPAYAVLL 179 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~------~~~~D~~~~ 179 (259)
...+|||+=|=+|.++...+.. ...+++.+|. ..+++.+++ ..++++|+..|.++. ...||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3579999999999999987764 3447999999 788888877 347999999999972 125999998
Q ss_pred hhh-hc--cCC-hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 180 KWI-LL--DWN-DEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 180 ~~v-lh--~~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
--- +- .+. ...-.++++.+.+.++| ||.|+.+-.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence 631 11 121 12235789999999999 888877665
No 251
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=95.82 E-value=0.0029 Score=44.63 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=45.7
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS 66 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~ 66 (259)
+.|++.|...+++.|+.|||+.+|++...+.+.+..+...+++..+..++.|.+++..
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~ 65 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHH
Confidence 5678888764368999999999999999999999988777665323346789988753
No 252
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.73 E-value=0.067 Score=43.77 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=54.3
Q ss_pred CCCeEEEecCCchHHHHH---HHHHC-CCCeEEEeec--hHHHhhccc---CCCCeEEEeCCCCCC---CC--------C
Q 041250 114 GLNSLVDVGGGTGTAAKA---IAKAF-PKLECTCFDL--PHVVNGLES---DLVNLKYVGGDMFKA---IS--------P 173 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~---l~~~~-p~~~~~~~D~--~~~~~~a~~---~~~ri~~~~~d~~~~---~~--------~ 173 (259)
++.+|+++|--.|.-+.- +++.. ++.+++++|+ +..-..+.+ ..+||+++.||-.++ .+ .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 478999999766655554 44555 8889999998 333333332 569999999998763 11 1
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
..+|+. ..=|.+. .+.+.|+.....+++ |++++|-|+...+
T Consensus 112 ~vlVil-Ds~H~~~--hvl~eL~~y~plv~~---G~Y~IVeDt~~~~ 152 (206)
T PF04989_consen 112 PVLVIL-DSSHTHE--HVLAELEAYAPLVSP---GSYLIVEDTIIED 152 (206)
T ss_dssp SEEEEE-SS----S--SHHHHHHHHHHT--T---T-EEEETSHHHHH
T ss_pred ceEEEE-CCCccHH--HHHHHHHHhCccCCC---CCEEEEEeccccc
Confidence 223332 2333333 366788888899999 8988888876543
No 253
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.66 E-value=0.014 Score=52.16 Aligned_cols=102 Identities=19% Similarity=0.131 Sum_probs=76.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWILL 184 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh 184 (259)
...++|+|||.|.....+..- ...+.+++|. +.-+..+.. ...+..++.+|+.+ |.+ .||.+.+..+.-
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 347899999999999888764 3567888887 433333333 55667778899988 666 499888877666
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
+.++- ..++++++++++| ||..++-|.+.-..-
T Consensus 190 ~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~~~~ 222 (364)
T KOG1269|consen 190 HAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKTAKL 222 (364)
T ss_pred cCCcH--HHHHHHHhcccCC---CceEEeHHHHHhhhc
Confidence 67764 4799999999999 898888887765543
No 254
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.62 E-value=0.0083 Score=49.20 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=47.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK 169 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~ 169 (259)
+...|+|.-||-|...+.++.++|. ++.+|+ |.-|..|+. ..+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5678999999999999999999874 778888 888888876 56799999999987
No 255
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.57 E-value=0.046 Score=48.66 Aligned_cols=112 Identities=12% Similarity=0.228 Sum_probs=77.8
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec---hHHHhhccc------------CCCCeEEEeCCCC
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL---PHVVNGLES------------DLVNLKYVGGDMF 168 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~------------~~~ri~~~~~d~~ 168 (259)
+.+.+. +.......|+|+|-|.....++....--+-+|+.+ |.-+..... ....++.+.++|.
T Consensus 184 i~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 184 IVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 344444 56678899999999999988877654444555554 433332221 3567888999998
Q ss_pred CC------CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250 169 KA------ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK 223 (259)
Q Consensus 169 ~~------~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~ 223 (259)
.+ .+.++++++.++. ++++...++= ++..-+++ |.+|+-.+...+-++.
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~---gtrIiS~~~L~~r~rs 316 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVA--FDPELKLRSK-EILQKCKD---GTRIISSKPLVPRPRS 316 (419)
T ss_pred CHHHHHHHhhcceEEEEeccc--CCHHHHHhhH-HHHhhCCC---cceEeccccccccccc
Confidence 84 2369999999988 5555544443 77778898 8999999988885443
No 256
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.55 E-value=0.003 Score=51.26 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=60.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHH
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~ 191 (259)
+.+.++||+|.|.|..+..++-.+.+ +...++ ..|..+.++..-||-- ..+..+..-++|+|.+-++|....+ .
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk~ynVl~-~~ew~~t~~k~dli~clNlLDRc~~--p 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKKNYNVLT-EIEWLQTDVKLDLILCLNLLDRCFD--P 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhcCCceee-ehhhhhcCceeehHHHHHHHHhhcC--h
Confidence 34579999999999999887665543 223344 3444444431111110 0111111115999999999876554 3
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 192 VKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 192 ~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
-++|+.++.++.|. .|++++. .++|
T Consensus 186 ~kLL~Di~~vl~ps--ngrviva-LVLP 210 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPS--NGRVIVA-LVLP 210 (288)
T ss_pred HHHHHHHHHHhccC--CCcEEEE-EEec
Confidence 58999999999994 6776543 3444
No 257
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.18 E-value=0.082 Score=46.68 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=79.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--CC-CCccEEeehhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AI-SPAYAVLLKWI 182 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~-~~~D~~~~~~v 182 (259)
..+.+|||.=+|-|.+++.+++...- +++.+|+ |.++.-.++ ..++++.+.||..+ +. +.+|-|++.+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 33789999999999999999987532 3999999 988887766 45679999999998 33 46999998864
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK 223 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~ 223 (259)
- .+.+.+-.+.+.+++ ||.+...+.+..+...
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~~~ 297 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYYEFVPEDDIE 297 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEEeccchhhcc
Confidence 3 134567777888888 8999999888776653
No 258
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.014 Score=45.68 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=67.0
Q ss_pred CCeEEEecCCchHHHH-HHHHHCCCCeEEEeec-hHHHhhccc--------CCCCeEEEeCCCCCC-----CCCccEEee
Q 041250 115 LNSLVDVGGGTGTAAK-AIAKAFPKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFKA-----ISPAYAVLL 179 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~-~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~~-----~~~~D~~~~ 179 (259)
..+|+++|||.-.++- -++...|.-.+.+.|- ...+...++ ..+++..+..+.... +..||+|+.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 3689999999655554 4566778888999997 555555444 345665555555441 225999999
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+..+ +-++....+.+.|...|+| .|+-++.-
T Consensus 110 ADCl--FfdE~h~sLvdtIk~lL~p---~g~Al~fs 140 (201)
T KOG3201|consen 110 ADCL--FFDEHHESLVDTIKSLLRP---SGRALLFS 140 (201)
T ss_pred ccch--hHHHHHHHHHHHHHHHhCc---ccceeEec
Confidence 9887 4456667899999999999 67755544
No 259
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=95.10 E-value=0.0015 Score=41.18 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=35.3
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
+.|++.|...+++.|+.|||+++|++...+.|+|..+...+++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v 48 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYV 48 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCe
Confidence 4578888886677899999999999999999999988766543
No 260
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.08 E-value=0.088 Score=45.41 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=56.8
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhccc----CCCCeEEEeCCCCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLES----DLVNLKYVGGDMFK 169 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~ 169 (259)
....++.+. .......||.-=|.|.++.++++++|... .+++|. |.+++.|++ ..+|+.++.++|.+
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 455666666 66678999999999999999999998775 999999 999999988 36799999988764
No 261
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=95.03 E-value=0.0071 Score=51.15 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=46.3
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS 66 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~ 66 (259)
+.|+++|...+.++++.|||+++|+++..+.|+|..|...+++..+.++++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHH
Confidence 4578888873344679999999999999999999999888876434456789999864
No 262
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=94.88 E-value=0.0098 Score=50.28 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=47.2
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK 67 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~ 67 (259)
+.|++.+....++.|+.|||+.+|++...+.|+|..|...+++ +.++++|.+++..-
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l--~~~~~~Y~lG~~~~ 68 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELGYV--TSDGRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE--EeCCCEEEecHHHH
Confidence 4677888764578999999999999999999999999888776 44568899988644
No 263
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.84 E-value=0.079 Score=45.51 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=73.6
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---CC--CCcc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AI--SPAY 175 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~--~~~D 175 (259)
.+++.+++=||||.|.+.++..+- +.+ .+..+|+ ..+++..++ ..++|..+.||-+. .. ..+|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 567899999999999999998876 666 4777888 666666665 56899999999876 23 3599
Q ss_pred EEeehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 176 AVLLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 176 ~~~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
+++.-..=-..+.. -...+++-+.++|++ +|.+++..-..
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ec~ 239 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGECM 239 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEeccee
Confidence 98865321112211 123567778899999 88887766443
No 264
>PRK11569 transcriptional repressor IclR; Provisional
Probab=94.81 E-value=0.011 Score=50.85 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=48.0
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK 67 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~ 67 (259)
+.|++.|.+.+++.|+.|||+.+|++...+.|+|..|...+++..+.+.++|++.+..-
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~ 89 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEecCHHHH
Confidence 46778887655789999999999999999999999998887763334578999987643
No 265
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.77 E-value=0.028 Score=51.60 Aligned_cols=55 Identities=25% Similarity=0.399 Sum_probs=46.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCC
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMF 168 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~ 168 (259)
++....++|+-||+|.++.++++.. .+++++++ |+.++-|+. ...+++|++|-..
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 5667899999999999999998874 57899998 888888876 6689999999333
No 266
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=94.69 E-value=0.0087 Score=40.03 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=44.4
Q ss_pred HHHcCcchhhhcCCC-CCCHHHHHHHcCCCccccccceeccccccCCCCCC-CCceeecCH
Q 041250 6 AFQLGIPDIINKHGK-PMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-EEQGYVLTN 64 (259)
Q Consensus 6 a~~l~lf~~L~~~~~-~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-~~~~y~~t~ 64 (259)
..+-.|++.|...++ ++|+.|||+++|++...+.+.|..|..-+++..+. .++.|.++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGGTPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCceEeec
Confidence 456678889988644 29999999999999999999988877666543222 447787764
No 267
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.66 E-value=0.52 Score=39.03 Aligned_cols=104 Identities=10% Similarity=0.104 Sum_probs=72.5
Q ss_pred cCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-h----HHHhhcccCCCCeEEEeCCCCCCCC------CccEEee
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-P----HVVNGLESDLVNLKYVGGDMFKAIS------PAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~----~~~~~a~~~~~ri~~~~~d~~~~~~------~~D~~~~ 179 (259)
+....+||-+|..+|+....+..- .|+..+.+++. | +.+..|+ ...||--+-.|...|.. ..|+++.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~-~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK-KRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc-cCCceeeeeccCCChHHhhcccccccEEEe
Confidence 677889999999999999999995 45778888887 4 4445555 67788888899988532 4787665
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK 223 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~ 223 (259)
- +- ..+++.-++.|+..-|++ ||.++|.=-...-+.+
T Consensus 150 D-Va---Qp~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t 186 (229)
T PF01269_consen 150 D-VA---QPDQARIAALNARHFLKP---GGHLIISIKARSIDST 186 (229)
T ss_dssp E--S---STTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SS
T ss_pred c-CC---ChHHHHHHHHHHHhhccC---CcEEEEEEecCcccCc
Confidence 4 22 235567788899899999 8988877554443443
No 268
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.65 E-value=0.21 Score=42.15 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=62.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc-----------CCCCeEEEeCCCCCC------CCC-cc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-----------DLVNLKYVGGDMFKA------ISP-AY 175 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----------~~~ri~~~~~d~~~~------~~~-~D 175 (259)
...+||++|+|+|..++..+. ....+++.-|.|.++...+. .+..+....-+...+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 356899999999955555544 45678999999766654432 334666666555542 223 89
Q ss_pred EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
+++.+.+++.-.. -..+++-++..|.. ++.++ ..+-+..
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~-l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIF-LAYPLRR 203 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEE-EEEeccc
Confidence 9999988865432 22455555555776 66444 4443333
No 269
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=94.61 E-value=0.012 Score=50.39 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=47.9
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK 67 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~ 67 (259)
+.|++.|...+++.|+.|||+.+|++...+.|+|..|...+++..+...+.|.+++..-
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~ 86 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEEecHHHH
Confidence 56788887655679999999999999999999999998887763344678899987543
No 270
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.066 Score=48.99 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=61.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC--C-CC---CccEEee
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A-IS---PAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~-~~---~~D~~~~ 179 (259)
..+..+++|+=||.|.++..++++ ..+++++++ +++++.|++ ..++++|+.++..+ + +. .+|.|++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456689999999999999999965 457999998 888888876 55779999999887 2 21 4788877
Q ss_pred hhhhccCChHHHH-HHHHHHHHhccc
Q 041250 180 KWILLDWNDEECV-KILKKCKEAITR 204 (259)
Q Consensus 180 ~~vlh~~~d~~~~-~il~~~~~~L~p 204 (259)
- =|..-+. .+++.+.+ ++|
T Consensus 369 D-----PPR~G~~~~~lk~l~~-~~p 388 (432)
T COG2265 369 D-----PPRAGADREVLKQLAK-LKP 388 (432)
T ss_pred C-----CCCCCCCHHHHHHHHh-cCC
Confidence 4 3333233 45555544 355
No 271
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.28 E-value=0.19 Score=43.65 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=43.3
Q ss_pred CCCeEEEecCCchHH-HHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeC----CCCCCC--C--CccE
Q 041250 114 GLNSLVDVGGGTGTA-AKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGG----DMFKAI--S--PAYA 176 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~----d~~~~~--~--~~D~ 176 (259)
...++||||+|.-.. .+.-++.| +.++++.|+ +..++.|++ +.++|+++.. +++... + .||+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 357899999998854 44445554 899999999 888888876 5789998754 455522 2 3999
Q ss_pred EeehhhhccCChH
Q 041250 177 VLLKWILLDWNDE 189 (259)
Q Consensus 177 ~~~~~vlh~~~d~ 189 (259)
.++.--+|.-.++
T Consensus 181 tmCNPPFy~s~~e 193 (299)
T PF05971_consen 181 TMCNPPFYSSQEE 193 (299)
T ss_dssp EEE-----SS---
T ss_pred EecCCccccChhh
Confidence 9998888876554
No 272
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.23 E-value=0.042 Score=48.99 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=38.4
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCC
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDM 167 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~ 167 (259)
+|+|+=||.|.++..+++.. -+++++|. +++++.|++ ..++++|+.++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 89999999999999999885 37999998 888888876 568899987654
No 273
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.08 E-value=0.65 Score=38.93 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=53.6
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcc----cCCCCeEEEeCCCCCCCC-----CccEEeehhhhc
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE----SDLVNLKYVGGDMFKAIS-----PAYAVLLKWILL 184 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~ri~~~~~d~~~~~~-----~~D~~~~~~vlh 184 (259)
.++||=||= .=..+++++...+..+++++|+ ...++..+ +..-.|+.+.+|+..++| +||+++.--.
T Consensus 45 gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP-- 121 (243)
T PF01861_consen 45 GKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP-- 121 (243)
T ss_dssp T-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred CCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC--
Confidence 578999994 4456667777777779999999 55555443 334449999999999876 3999887642
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
++.+-..-.+.+..++|+. +|+..++
T Consensus 122 -yT~~G~~LFlsRgi~~Lk~--~g~~gy~ 147 (243)
T PF01861_consen 122 -YTPEGLKLFLSRGIEALKG--EGCAGYF 147 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-S--TT-EEEE
T ss_pred -CCHHHHHHHHHHHHHHhCC--CCceEEE
Confidence 4456677789999999997 2544433
No 274
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.01 E-value=0.06 Score=41.87 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=37.9
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
++|+|+..|++-++.-++-...++.+++.|+| ||+|-|.-+-
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvPd 88 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVPD 88 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcCC
Confidence 59999999999999999999999999999999 9998876543
No 275
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=93.95 E-value=0.018 Score=49.23 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=48.2
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
+.|++.|...+++.|+.|||+.+|++...+.|+|..|...+++..+.+++.|++++....|
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~~l 74 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHHHH
Confidence 4577788764456999999999999999999999998887765323456789999876544
No 276
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=93.78 E-value=0.039 Score=34.90 Aligned_cols=38 Identities=34% Similarity=0.451 Sum_probs=32.6
Q ss_pred HHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCcccccccee
Q 041250 2 TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFA 43 (259)
Q Consensus 2 aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~ 43 (259)
+|.+|.+.|-||.=. .+|..|||+.+|+++..+..-|+
T Consensus 8 ~L~~A~~~GYfd~PR----~~tl~elA~~lgis~st~~~~LR 45 (53)
T PF04967_consen 8 ILKAAYELGYFDVPR----RITLEELAEELGISKSTVSEHLR 45 (53)
T ss_pred HHHHHHHcCCCCCCC----cCCHHHHHHHhCCCHHHHHHHHH
Confidence 689999999999754 59999999999999988876554
No 277
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=93.78 E-value=0.022 Score=48.40 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=46.5
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK 67 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~ 67 (259)
+.|++.|... ++.|+.|||+.+|++...+.|+|..|...+++..+.+.++|.+++..-
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEecHHHH
Confidence 4577777764 689999999999999999999999988887653234568899997643
No 278
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.72 E-value=0.89 Score=38.00 Aligned_cols=100 Identities=8% Similarity=0.036 Sum_probs=64.3
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec--hHHHhhcccCCCCeEEEeC-CCCCC----CC-
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGLESDLVNLKYVGG-DMFKA----IS- 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~-d~~~~----~~- 172 (259)
....++.++ ...+...+||||..||.++..++++. .-++.++|. -+.-...+ ..+|+..++. |+..- +.
T Consensus 67 L~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR-~d~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 67 LEKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR-NDPRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred HHHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh-cCCcEEEEecCChhhCCHHHccc
Confidence 344566666 23567899999999999999999883 236888897 33333344 5667776665 55431 11
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
..|++++--.+ .+ ...+|-.+...++| ++.+
T Consensus 144 ~~d~~v~DvSF--IS---L~~iLp~l~~l~~~---~~~~ 174 (245)
T COG1189 144 KPDLIVIDVSF--IS---LKLILPALLLLLKD---GGDL 174 (245)
T ss_pred CCCeEEEEeeh--hh---HHHHHHHHHHhcCC---CceE
Confidence 35666654322 22 35688888888998 5544
No 279
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.67 E-value=0.49 Score=43.47 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=75.5
Q ss_pred eEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhhccC-
Q 041250 117 SLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDW- 186 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~- 186 (259)
+++-+|||.-.+...+.+. ++ .++.+|. +.+++.... ..+-..+...|+.. .++ +||+++....++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999888887765 33 3677788 444444332 45677888899988 555 69999999999875
Q ss_pred ChHH-------HHHHHHHHHHhcccCCCCcEEEEEeee--ecCCCC
Q 041250 187 NDEE-------CVKILKKCKEAITRDGKKRKVIIKDMI--KENRKK 223 (259)
Q Consensus 187 ~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~--~~~~~~ 223 (259)
.++. +-..+.++.++++| ||+.+.+-.. .+..+.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~r~ 171 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQGRK 171 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCCCC
Confidence 3332 23468999999999 9998888884 555544
No 280
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.56 E-value=0.18 Score=46.44 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=66.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-h----HHHhhcccCCCCeEEEeCCCCCC---CC-CccEEeehhhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P----HVVNGLESDLVNLKYVGGDMFKA---IS-PAYAVLLKWIL 183 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~ri~~~~~d~~~~---~~-~~D~~~~~~vl 183 (259)
.....|+|...|.|.++.+|.+. | +.++.. | ..+...- ....--+-+|..++ .| .||++...+++
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIy--dRGLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIY--DRGLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhh--hcccchhccchhhccCCCCcchhheehhhhh
Confidence 44578999999999999999754 2 444443 2 2222211 11222244677664 45 49999999999
Q ss_pred ccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 184 LDWND-EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 184 h~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
..+.+ -+...||-++=|.|+| +|.++|-|.+
T Consensus 438 s~~~~rC~~~~illEmDRILRP---~G~~iiRD~~ 469 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRP---GGWVIIRDTV 469 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCC---CceEEEeccH
Confidence 88764 3456799999999999 8998887753
No 281
>PRK10742 putative methyltransferase; Provisional
Probab=93.51 E-value=0.22 Score=42.01 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=74.0
Q ss_pred hHHHHHhcccccCCCC--eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEEE
Q 041250 101 TSVMIQKCKNVFEGLN--SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKYV 163 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~ 163 (259)
.+.+++... +.+.. +|||+=+|.|..+..++.+ +++++.++. |.+....++ ...|++++
T Consensus 75 ~~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 75 GEAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred ccHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 356777776 55555 8999999999999999998 778999998 433333222 12579999
Q ss_pred eCCCCC---CCC-CccEEeehh----------------hhccC--ChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 164 GGDMFK---AIS-PAYAVLLKW----------------ILLDW--NDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 164 ~~d~~~---~~~-~~D~~~~~~----------------vlh~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
.+|..+ ..+ .||+|++-- ++|.+ .|.+...+|+.+.++-+ -++++-.+...+
T Consensus 151 ~~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~-----kRVVVKrp~~a~ 224 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT-----KRVVVKRPDYAP 224 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC-----ceEEEecCCCCC
Confidence 998876 233 489888643 23222 23334566776665543 577777765443
No 282
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.81 Score=39.72 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=80.5
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC--CCCeEEEeechHHHhhccc---------------------------CCCCeEE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF--PKLECTCFDLPHVVNGLES---------------------------DLVNLKY 162 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~---------------------------~~~ri~~ 162 (259)
..+...||.+|||.-.+...+...+ +.++++-+|.|+++..--. ..+|...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567789999999999999999987 8889999999877753111 1345556
Q ss_pred EeCCCCC--CC-----C-----C-ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCC
Q 041250 163 VGGDMFK--AI-----S-----P-AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKD 224 (259)
Q Consensus 163 ~~~d~~~--~~-----~-----~-~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~ 224 (259)
+..|..+ .. + . +-+++.--+|-+.+++++..+++.+...... +.+++.|.+.+.++.+
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg 235 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFG 235 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHH
Confidence 6666653 10 0 1 1233334577788999999999999999885 8999999999777554
No 283
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=92.94 E-value=1.7 Score=39.20 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=64.6
Q ss_pred CCCeEEEecCCchHHHHHH--------HHH-------CCCCeEEEeech----HHH-hhccc--------------CCCC
Q 041250 114 GLNSLVDVGGGTGTAAKAI--------AKA-------FPKLECTCFDLP----HVV-NGLES--------------DLVN 159 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l--------~~~-------~p~~~~~~~D~~----~~~-~~a~~--------------~~~r 159 (259)
+..+|+|+|||+|..+..+ .++ -|.+++..=|+| ..+ ..... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4678999999999766443 222 356788888886 111 11110 0112
Q ss_pred ---eEEEeCCCCC-CCC--CccEEeehhhhccCCh--H----------------------HH------------HHHHHH
Q 041250 160 ---LKYVGGDMFK-AIS--PAYAVLLKWILLDWND--E----------------------EC------------VKILKK 197 (259)
Q Consensus 160 ---i~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d--~----------------------~~------------~~il~~ 197 (259)
+.-++|.|+. -+| ..++++.++.||-.+. + .+ ..+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3446689998 456 4899999999984441 1 11 123333
Q ss_pred HHHhcccCCCCcEEEEEeeeecC
Q 041250 198 CKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 198 ~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
=++-|.| ||++++.-...+.
T Consensus 223 Ra~ELvp---GG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKR---GGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhcc---CcEEEEEEecCCC
Confidence 3456889 9999988877654
No 284
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=92.85 E-value=0.032 Score=38.74 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNASK 67 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~ 67 (259)
++.|.+|||+.+++++..+++++..|.-.+++.. ...+|.|.++...+
T Consensus 24 ~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-CC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeecCCHH
Confidence 4699999999999999999999998876665432 34568898876543
No 285
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.70 E-value=0.6 Score=41.27 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=61.9
Q ss_pred cCCCCeEEEecC-CchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEe--CCCCCCCCC-ccEEeehhhhccC
Q 041250 112 FEGLNSLVDVGG-GTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG--GDMFKAISP-AYAVLLKWILLDW 186 (259)
Q Consensus 112 ~~~~~~vlDvGg-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~d~~~~~~~-~D~~~~~~vlh~~ 186 (259)
..+..+|+=+|. |-|.+++.++++.- .+++++|. ++-.+.|++.....-... .|..+..++ +|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 455566555554 67889999999775 89999999 777888886332222221 233333332 888776643 1
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.-+....+.|++ +|+++++-...
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 235666777898 99999988763
No 286
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.68 E-value=1.7 Score=38.84 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=72.3
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeec-hHHHh----hccc-CCCCeEEEeCCCCC---CCC---CccEE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVN----GLES-DLVNLKYVGGDMFK---AIS---PAYAV 177 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~----~a~~-~~~ri~~~~~d~~~---~~~---~~D~~ 177 (259)
.....+|||...+.|.=+..+++..++ ..++.+|. +.-+. ..++ ...++..+..|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456789999999999999999998765 55689998 43333 3333 45567777777653 222 28887
Q ss_pred eehh------hh-------ccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 178 LLKW------IL-------LDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 178 ~~~~------vl-------h~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
++-- ++ ..|..++ ..+||+.+.+.++| ||.|+-....+..
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~ 293 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTP 293 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCch
Confidence 7632 33 3444332 25789999999999 8887666654443
No 287
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.38 E-value=0.98 Score=39.34 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=64.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-----h-HHHhhccc---------------------------------
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-----P-HVVNGLES--------------------------------- 155 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~-~~~~~a~~--------------------------------- 155 (259)
..+||-=|||.|.++..|+...+.+++-=+-. + -++...+.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 57899999999999999999888776542211 1 11111110
Q ss_pred -----CCCCeEEEeCCCCC--CCC----CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 156 -----DLVNLKYVGGDMFK--AIS----PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 156 -----~~~ri~~~~~d~~~--~~~----~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
..+..+.-.|||.+ +.+ .+|+|+.++.+. +.......|..|...|+| ||..+=.-+.
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPL 298 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPL 298 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccce
Confidence 12344446699988 333 389999885442 234577899999999999 7765544443
No 288
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=92.18 E-value=0.076 Score=42.01 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS 66 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~ 66 (259)
++.|+++||+.+++++..+.++|..|.-.+++.. ...+|.|.+....
T Consensus 24 ~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p 71 (164)
T PRK10857 24 GPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDA 71 (164)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCH
Confidence 6899999999999999999999999877766543 3456779987654
No 289
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=92.09 E-value=1 Score=34.78 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=48.0
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-----hHHHhhcccCCCCeEEEeCCCCCCCC-----CccEEeehhhhc
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-----PHVVNGLESDLVNLKYVGGDMFKAIS-----PAYAVLLKWILL 184 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~ri~~~~~d~~~~~~-----~~D~~~~~~vlh 184 (259)
..-|+|+|=|.|..=..+.+.+|+-++.++|. |+.... .-.++.||+.+..+ +..+.+...=+-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~------~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G 102 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPP------EEDLILGDIRETLPALARFGAGAALAHADIG 102 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---------GGGEEES-HHHHHHHHHHH-S-EEEEEE---
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCc------hHheeeccHHHHhHHHHhcCCceEEEEeecC
Confidence 36799999999999999999999999999996 333333 33677788877322 233444443333
Q ss_pred cCChHHHHHHHHH----HHHhcccCCCCcEEEEEee
Q 041250 185 DWNDEECVKILKK----CKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 185 ~~~d~~~~~il~~----~~~~L~p~~~gg~lli~e~ 216 (259)
.-..++.....+. +..+|.| || +++...
T Consensus 103 ~g~~~~d~a~a~~lspli~~~la~---gG-i~vS~~ 134 (160)
T PF12692_consen 103 TGDKEKDDATAAWLSPLIAPVLAP---GG-IMVSGQ 134 (160)
T ss_dssp -S-HHHHHHHHHHHHHHHGGGEEE---EE-EEEESS
T ss_pred CCCcchhHHHHHhhhHHHHHHhcC---Cc-EEEeCC
Confidence 3333333333443 3457888 55 444443
No 290
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.09 E-value=3.9 Score=33.50 Aligned_cols=106 Identities=9% Similarity=0.089 Sum_probs=76.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-h----HHHhhcccCCCCeEEEeCCCCCCCC------CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P----HVVNGLESDLVNLKYVGGDMFKAIS------PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~ri~~~~~d~~~~~~------~~D~~~~~ 180 (259)
+.+..+||=+|..+|+....+..-.++..+.+++. | +.++.++ ...|+--+-+|...|+. ..|+++.-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~-~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE-KRPNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH-hCCCceeeecccCCcHHhhhhcccccEEEEe
Confidence 78889999999999999999999888777778876 3 4445555 56778778889888643 47876543
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCc
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDY 225 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~ 225 (259)
+ -.++++.-+..|+..-|++ ||.+++.=-...-+.+.+
T Consensus 153 -V---AQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~d 190 (231)
T COG1889 153 -V---AQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTAD 190 (231)
T ss_pred -c---CCchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCC
Confidence 1 2235566677888889998 787766655555555543
No 291
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.99 E-value=0.14 Score=37.40 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=30.3
Q ss_pred ccEEeehh----hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 174 AYAVLLKW----ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 174 ~D~~~~~~----vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
||+|++-. |=-+|.|+-..++++++++.|+| |.++|.|+
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEp 44 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEP 44 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE-
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeC
Confidence 78877654 33368899999999999999999 55677776
No 292
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.89 E-value=0.28 Score=44.50 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=63.9
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C-CCC--ccEEeehh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A-ISP--AYAVLLKW 181 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~-~~~--~D~~~~~~ 181 (259)
.+...+||||.|+|.++.-.+++.-+ +++.++. .+|.+.|++ ..++|+++.---.+ . .|. +|+++---
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 45678999999999999999998744 6888887 888888877 56888887654443 2 232 77766555
Q ss_pred hhccCChHHHHHHHHHHHHhcc
Q 041250 182 ILLDWNDEECVKILKKCKEAIT 203 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~ 203 (259)
+....--+-+..-++++.+.|.
T Consensus 144 fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhccccchhHHHHHHHhc
Confidence 5544444545566777777664
No 293
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=91.18 E-value=0.88 Score=39.32 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=72.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC----CC-CccEEee
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA----IS-PAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~----~~-~~D~~~~ 179 (259)
.....+|||..++.|.=+..+++..+ ..+++..|+ +.-+...++ ...++.....|.... .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45567899999999999999999876 668999998 544444333 567788887777662 22 3888876
Q ss_pred hh------hhccCC-------hH-------HHHHHHHHHHHhc----ccCCCCcEEEEEeeeec
Q 041250 180 KW------ILLDWN-------DE-------ECVKILKKCKEAI----TRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 180 ~~------vlh~~~-------d~-------~~~~il~~~~~~L----~p~~~gg~lli~e~~~~ 219 (259)
-- ++..-+ .+ ...++|+++.+.+ +| ||+++-....+.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~~ 223 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSLS 223 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccHH
Confidence 32 222111 11 1257899999999 99 888766655443
No 294
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=90.80 E-value=1.2 Score=39.55 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=60.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHH--------HC--------CCCeEEEeechH-----HHhhccc------CCCC--eEE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAK--------AF--------PKLECTCFDLPH-----VVNGLES------DLVN--LKY 162 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~--------~~--------p~~~~~~~D~~~-----~~~~a~~------~~~r--i~~ 162 (259)
.++.-+|+|+||.+|..+..+.. ++ |.++++.-|+|. +...... ...+ +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45567999999999999877633 22 345778889861 1111111 1223 344
Q ss_pred EeCCCCCC-CC--CccEEeehhhhccCC-------h------------------HHH------------HHHHHHHHHhc
Q 041250 163 VGGDMFKA-IS--PAYAVLLKWILLDWN-------D------------------EEC------------VKILKKCKEAI 202 (259)
Q Consensus 163 ~~~d~~~~-~~--~~D~~~~~~vlh~~~-------d------------------~~~------------~~il~~~~~~L 202 (259)
+++.|+.. +| ..|+++.++.||-.+ + +.+ ..+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 67999983 55 489999999998443 1 121 23333334568
Q ss_pred ccCCCCcEEEEEeeeecC
Q 041250 203 TRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 203 ~p~~~gg~lli~e~~~~~ 220 (259)
+| ||++++.-...++
T Consensus 174 v~---GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDE 188 (334)
T ss_dssp EE---EEEEEEEEEE-ST
T ss_pred cc---CcEEEEEEeeccc
Confidence 89 9999998888777
No 295
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.79 E-value=0.62 Score=41.97 Aligned_cols=67 Identities=7% Similarity=0.002 Sum_probs=56.0
Q ss_pred hcccCCCCeEEEeCCCCC---CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 152 GLESDLVNLKYVGGDMFK---AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 152 ~a~~~~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
..++..+||+++.+++.+ ..| .+|.+++..++--+++++..+.++++.++++| ||+++.-....+..
T Consensus 269 ~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~~ 340 (380)
T PF11899_consen 269 ALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPPW 340 (380)
T ss_pred HHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCCC
Confidence 334456999999999887 243 59999999999888999999999999999999 99999888766544
No 296
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=90.40 E-value=0.17 Score=33.08 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCCCCC-CceeecCH
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDE-EQGYVLTN 64 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~y~~t~ 64 (259)
.+.|..|||+.+|+++..+.+.+..+..-+++ +.. .+.|.++|
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i--~~~~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLI--SRRGRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE--EecCCCeEEeCC
Confidence 68999999999999999999999887766554 323 36787764
No 297
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=90.40 E-value=0.085 Score=32.00 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecC
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLT 63 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t 63 (259)
-+.|..+||+.+|+++..+.+.++.+...+++ +...+.|.++
T Consensus 7 ~~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l--~~~~~~~~i~ 48 (48)
T smart00419 7 LPLTRQEIAELLGLTRETVSRTLKRLEKEGLI--SREGGRIVIL 48 (48)
T ss_pred eccCHHHHHHHHCCCHHHHHHHHHHHHHCCCE--EEeCCEEEEC
Confidence 47899999999999999999999888776654 3334666553
No 298
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=90.32 E-value=0.044 Score=37.52 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=40.3
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhh
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKL 68 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~ 68 (259)
.|+..+.. ++.+..+|+..++++...+.+.|..|..-+++ +..++.|.+|+.+.-
T Consensus 10 ~IL~~l~~--~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI--~~~~~~Y~lTekG~~ 64 (77)
T PF14947_consen 10 DILKILSK--GGAKKTEIMYKANLNYSTLKKYLKELEEKGLI--KKKDGKYRLTEKGKE 64 (77)
T ss_dssp HHHHHH-T--T-B-HHHHHTTST--HHHHHHHHHHHHHTTSE--EEETTEEEE-HHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCe--eCCCCEEEECccHHH
Confidence 34556654 89999999999999999999999988777665 557899999999873
No 299
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=90.22 E-value=0.1 Score=40.68 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNASK 67 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~ 67 (259)
++.|+++||+..|+++..+.++|..|.-.+++.. ...+|.|.+...++
T Consensus 24 ~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar~~~ 72 (150)
T COG1959 24 GPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYRLARPPE 72 (150)
T ss_pred CcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCccCCCChH
Confidence 3899999999999999999999999887776543 34578899987654
No 300
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=90.20 E-value=0.035 Score=34.07 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=32.6
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS 49 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~ 49 (259)
.++.|...|.+ ++.++.|||+.+|+++..+++-|+.+...+
T Consensus 3 ~R~~Il~~L~~--~~~~~~el~~~l~~s~~~vs~hL~~L~~~g 43 (47)
T PF01022_consen 3 TRLRILKLLSE--GPLTVSELAEELGLSQSTVSHHLKKLREAG 43 (47)
T ss_dssp HHHHHHHHHTT--SSEEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CCCchhhHHHhccccchHHHHHHHHHHHCc
Confidence 35677888887 899999999999999999998776665443
No 301
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=90.10 E-value=0.88 Score=40.38 Aligned_cols=63 Identities=24% Similarity=0.433 Sum_probs=44.0
Q ss_pred cCchHHHHHHHHHHhcchhhhHHHHHhcccc-cCCCCeEEEecCCchHHHHHHHHH----CC----CCeEEEeechHHH
Q 041250 81 DESKLNNFFNEAMASDARLATSVMIQKCKNV-FEGLNSLVDVGGGTGTAAKAIAKA----FP----KLECTCFDLPHVV 150 (259)
Q Consensus 81 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~----~p----~~~~~~~D~~~~~ 150 (259)
+.|+..+.|....+.+ ++..+... .+.+..+|++|.|+|.++..+++. +| .+++..++.++-+
T Consensus 50 TApels~lFGella~~-------~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 50 TAPELSQLFGELLAEQ-------FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred echhHHHHHHHHHHHH-------HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 5688888888876543 33333311 455678999999999999988764 45 5678888874333
No 302
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=89.97 E-value=1.3 Score=34.00 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=51.7
Q ss_pred eEEEeec-hHHHhhccc------CCCCeEEEeCCCCC---CCC--CccEEeehhhhccCC---------hHHHHHHHHHH
Q 041250 140 ECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AIS--PAYAVLLKWILLDWN---------DEECVKILKKC 198 (259)
Q Consensus 140 ~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~~~---------d~~~~~il~~~ 198 (259)
++.+||+ +++++..++ ..+|++++..+=.. -.+ ..|+++++- -++| .+.....++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 888888776 45689998764433 233 478877763 2222 34457789999
Q ss_pred HHhcccCCCCcEEEEEeeeecCCC
Q 041250 199 KEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 199 ~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
.+.|+| ||.|.|+=+.-.+.+
T Consensus 79 l~lL~~---gG~i~iv~Y~GH~gG 99 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPGHPGG 99 (140)
T ss_dssp HHHEEE---EEEEEEEE--STCHH
T ss_pred HHhhcc---CCEEEEEEeCCCCCC
Confidence 999999 899988887655544
No 303
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.90 E-value=2.1 Score=38.40 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=63.1
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCC-eEEEeCC-CCC---CC-C--CccEEeeh
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVN-LKYVGGD-MFK---AI-S--PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~r-i~~~~~d-~~~---~~-~--~~D~~~~~ 180 (259)
.....+|+.+|+|. |..+..++++..-.+++++|. ++..+.+++. ... +.....+ +.+ .. + ++|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45567899999998 999999999986445888886 7777777652 211 1111111 211 11 1 37777653
Q ss_pred h---------------hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 181 W---------------ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 181 ~---------------vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
- +|+..++. ...+.++.+.+++ +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence 1 22222332 3578888999999 899988854
No 304
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=89.69 E-value=0.058 Score=33.12 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=31.4
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecccc
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKL 47 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~ 47 (259)
.+..|+..|.++ +++|..|||+.+|++...+.+.++.+..
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~is~~tv~~~l~~L~~ 43 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGISRSTVNRYLKKLEE 43 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456788889985 6799999999999999999887776643
No 305
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=89.11 E-value=3.2 Score=38.81 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCeEEEecCCchHHHHHHHHH----CCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKW 181 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~ 181 (259)
...|.-+|+|.|-+..+..++ .-.++.+.++- |.++...+. -..||+++..||.+ .-| ++|+++ +-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V-SE 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV-SE 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH-HH
Confidence 457889999999998887664 34566777776 877765554 46899999999998 544 488654 55
Q ss_pred hhccCCh-HHHHHHHHHHHHhcccCCCCcE
Q 041250 182 ILLDWND-EECVKILKKCKEAITRDGKKRK 210 (259)
Q Consensus 182 vlh~~~d-~~~~~il~~~~~~L~p~~~gg~ 210 (259)
.|-.+.| |-.-+-|..+-..|+| .|.
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkp---dgI 473 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKP---DGI 473 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCC---Cce
Confidence 5665654 3345668888888999 653
No 306
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=88.94 E-value=0.12 Score=33.96 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=37.9
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-----CCCCceeecCHhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-----NDEEQGYVLTNAS 66 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-----~~~~~~y~~t~~~ 66 (259)
+.-+...|....++.|..+||+.++++...+.+.+..+...+++.. +.....|.+|+.+
T Consensus 5 q~~vL~~l~~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 5 QWQVLRALAHSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHHHT--TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHHHccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 3445556662238999999999999999999998888777665421 1223468888864
No 307
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=88.42 E-value=2.4 Score=35.00 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=63.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCC--eEEEeec-hHHHhhccc----------------------------------
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKL--ECTCFDL-PHVVNGLES---------------------------------- 155 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~---------------------------------- 155 (259)
.++.++-|-.||.|.++.-+.--+++. .+++-|+ +++++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 467899999999999999887776554 4788898 888887764
Q ss_pred -------------CCCCeEEEeCCCCCCCC--------CccEEeehh---hhccCC----hHHHHHHHHHHHHhcccCCC
Q 041250 156 -------------DLVNLKYVGGDMFKAIS--------PAYAVLLKW---ILLDWN----DEECVKILKKCKEAITRDGK 207 (259)
Q Consensus 156 -------------~~~ri~~~~~d~~~~~~--------~~D~~~~~~---vlh~~~----d~~~~~il~~~~~~L~p~~~ 207 (259)
..........|.|++.+ ..|+|+.-- -+-+|. .+-+.++|..++++|.+
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 12346678889998422 268777543 334564 34567899999999955
Q ss_pred CcEEEEEe
Q 041250 208 KRKVIIKD 215 (259)
Q Consensus 208 gg~lli~e 215 (259)
++.+.|++
T Consensus 207 ~sVV~v~~ 214 (246)
T PF11599_consen 207 RSVVAVSD 214 (246)
T ss_dssp T-EEEEEE
T ss_pred CcEEEEec
Confidence 56655544
No 308
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=88.09 E-value=0.27 Score=34.67 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=45.3
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-----CCceeecCHhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-----EEQGYVLTNASKLL 69 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~~~y~~t~~~~~l 69 (259)
.++.++..|... ++.|..+||+.+++++..+.+.++.|...+++.... ....|.+|+.+..+
T Consensus 11 ~~~~il~~l~~~-~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~ 77 (101)
T smart00347 11 TQFLVLRILYEE-GPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGREL 77 (101)
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHH
Confidence 456778888764 679999999999999999999888877665542111 12357788877643
No 309
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.05 E-value=3.1 Score=32.89 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=59.0
Q ss_pred ecCCchHHHHHHHHHCC---CCeEEEeec-hHHHhhccc--------CCCCeEEEeC-CCCC---CC--C--CccEEeeh
Q 041250 121 VGGGTGTAAKAIAKAFP---KLECTCFDL-PHVVNGLES--------DLVNLKYVGG-DMFK---AI--S--PAYAVLLK 180 (259)
Q Consensus 121 vGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~-d~~~---~~--~--~~D~~~~~ 180 (259)
||=|.-.++..|++.++ ++-+|.+|- .++.+.... ....++++.+ |..+ .. . .||.|++.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 67788889999999887 444677776 333333331 2344444333 6555 12 1 49999887
Q ss_pred hhhccC-----------ChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 181 WILLDW-----------NDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 181 ~vlh~~-----------~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+-..-. ..+-...+++.+.+.|++ +|.|.|.-.-
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~ 127 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKD 127 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCC
Confidence 643321 122335678888889999 8998887653
No 310
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.84 E-value=1.1 Score=37.33 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=65.2
Q ss_pred ccCCCCeEEEecCCchHHHHHHHHHC-C----C-C---eEEEeechHHHhhcccCCCCeEEEeCCCCCC---------CC
Q 041250 111 VFEGLNSLVDVGGGTGTAAKAIAKAF-P----K-L---ECTCFDLPHVVNGLESDLVNLKYVGGDMFKA---------IS 172 (259)
Q Consensus 111 ~~~~~~~vlDvGgG~G~~~~~l~~~~-p----~-~---~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~ 172 (259)
.+.+..++||+..-.|.++.-+.++. . . - +++.+|+..|.. -+.|.-+.+|+.++ +.
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----I~GV~qlq~DIT~~stae~Ii~hfg 112 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----IEGVIQLQGDITSASTAEAIIEHFG 112 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----cCceEEeecccCCHhHHHHHHHHhC
Confidence 35778899999999999999998763 2 1 1 288999866653 45677888888872 22
Q ss_pred --CccEEeehh-----hhccCChHHHHHH----HHHHHHhcccCCCCcEEE
Q 041250 173 --PAYAVLLKW-----ILLDWNDEECVKI----LKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 173 --~~D~~~~~~-----vlh~~~d~~~~~i----l~~~~~~L~p~~~gg~ll 212 (259)
++|+|++-. -+|+++.=-..++ |.-...+|+| ||.++
T Consensus 113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV 160 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV 160 (294)
T ss_pred CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence 489998864 5787764322233 3444568999 88754
No 311
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=87.72 E-value=0.065 Score=34.79 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=35.5
Q ss_pred HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
|..-.++.|+..|... +|.|+.|||+.+|+++..+++=|+.|...++
T Consensus 7 L~~p~R~~Il~~L~~~-~~~t~~ela~~l~~~~~t~s~hL~~L~~aGl 53 (61)
T PF12840_consen 7 LSDPTRLRILRLLASN-GPMTVSELAEELGISQSTVSYHLKKLEEAGL 53 (61)
T ss_dssp HTSHHHHHHHHHHHHC-STBEHHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 3445778899999432 8999999999999999999886666554443
No 312
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.62 E-value=1.5 Score=37.05 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=25.0
Q ss_pred CCeEEEecCCchHHHHHHHHHCC--------CCeEEEeech
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFP--------KLECTCFDLP 147 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p--------~~~~~~~D~~ 147 (259)
+-+|+++|+|+|.++..+++... .++++.++.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S 59 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS 59 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence 47999999999999999988533 3589999984
No 313
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=87.39 E-value=0.17 Score=30.28 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=24.7
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccc
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQ 39 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~ 39 (259)
++..|.+.|..+ +..|+.+||+.+|+++..+.
T Consensus 4 ~D~~Il~~Lq~d-~r~s~~~la~~lglS~~~v~ 35 (42)
T PF13404_consen 4 LDRKILRLLQED-GRRSYAELAEELGLSESTVR 35 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHHHc-CCccHHHHHHHHCcCHHHHH
Confidence 566788889885 89999999999999987664
No 314
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=87.09 E-value=0.21 Score=38.08 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS 66 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~ 66 (259)
++.|.++||+.+++++..+.++|..|.-.+++.. ...+|.|.++...
T Consensus 24 ~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCH
Confidence 5899999999999999999999998877665432 2445679887644
No 315
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.68 E-value=1.2 Score=37.88 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=31.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEeec
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-----PKLECTCFDL 146 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~D~ 146 (259)
+.+...+||+|||.|.++..+.+.. +...++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 5667899999999999999999988 5678999998
No 316
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=85.85 E-value=1.5 Score=37.19 Aligned_cols=70 Identities=20% Similarity=0.177 Sum_probs=41.5
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHHHHHHHHHhccc
Q 041250 128 AAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITR 204 (259)
Q Consensus 128 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p 204 (259)
++.+|.++.|+.+++++|. +..++.+.+. +-+.-...+ .+....+|+|+++ .|.+...++++++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCC
Confidence 4678888999999999998 7777777532 111111111 1223457988887 4445556666666666655
No 317
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=85.48 E-value=0.26 Score=29.84 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=20.8
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCcccccccee
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFA 43 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~ 43 (259)
+.+.+.+ | .|+.+||+.+|++...+.|+|.
T Consensus 14 i~~l~~~--G-~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 14 IKELYAE--G-MSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHHHT--T---HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHHHC--C-CCHHHHHHHHCcCHHHHHHHHh
Confidence 3444553 4 9999999999999998888765
No 318
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=85.18 E-value=4 Score=35.02 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=63.3
Q ss_pred eEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeCCCCC--C---CCCccEEeehhhhccCCh-
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFK--A---ISPAYAVLLKWILLDWND- 188 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~--~---~~~~D~~~~~~vlh~~~d- 188 (259)
+++|+-||.|.+...+.+.. .+ +..+|+ +.+++..+...+.. .+.+|+.+ + .+.+|+++...-+..++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 68999999999999998873 55 577898 77777666532222 55667766 1 346899998875554431
Q ss_pred -------HHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 189 -------EECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 189 -------~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
+..-.++.++.+.++-. .-+++++|.+..-
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~ 115 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGL 115 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcch
Confidence 12223444444444321 2368999988654
No 319
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=84.77 E-value=0.32 Score=36.63 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCCC-CCCceeecCHhhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-DEEQGYVLTNASK 67 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-~~~~~y~~t~~~~ 67 (259)
++.|.++||+.+++++..+.++++.|...+++... ..+|.|.++...+
T Consensus 24 ~~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCccCCCCHH
Confidence 58999999999999999999999988776655322 3456788875543
No 320
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=84.66 E-value=0.42 Score=35.30 Aligned_cols=63 Identities=16% Similarity=0.075 Sum_probs=46.2
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--C---CCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--D---EEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~---~~~~y~~t~~~~~l~ 70 (259)
.+..++..|..+ ++.|..+||+.+++++..+.+.++.+..-+++... . ..-.+.+|+.++.+.
T Consensus 29 ~q~~iL~~l~~~-~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~ 96 (118)
T TIGR02337 29 QQWRILRILAEQ-GSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALY 96 (118)
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHH
Confidence 345577778764 78999999999999999999988887665544221 1 223689999887543
No 321
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.64 E-value=6 Score=35.18 Aligned_cols=95 Identities=19% Similarity=0.108 Sum_probs=67.2
Q ss_pred CeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CC-CCeEEEeCC-CC----C-CCC-CccEEeehhhhc
Q 041250 116 NSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DL-VNLKYVGGD-MF----K-AIS-PAYAVLLKWILL 184 (259)
Q Consensus 116 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~-~ri~~~~~d-~~----~-~~~-~~D~~~~~~vlh 184 (259)
.+|+=+|+|. |.++..+++.+...++++.|. +.-++.|++ .. +.+.....+ .- + ... ++|+++-..-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 3899999997 777788889988889999998 888999987 32 333333232 11 1 112 5898886543
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
....+..+.++++| +|++.++-....+.
T Consensus 248 ------~~~~~~~ai~~~r~---gG~v~~vGv~~~~~ 275 (350)
T COG1063 248 ------SPPALDQALEALRP---GGTVVVVGVYGGED 275 (350)
T ss_pred ------CHHHHHHHHHHhcC---CCEEEEEeccCCcc
Confidence 12367888888999 99999888775553
No 322
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=84.43 E-value=0.21 Score=37.16 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=44.5
Q ss_pred HHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCH
Q 041250 2 TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTN 64 (259)
Q Consensus 2 aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~ 64 (259)
||.--.++.|+..|... ++.++.|||+.+++++..+++=|+.|...+++..+. ..-.|++.+
T Consensus 12 aLadptRl~IL~~L~~~-~~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~ 75 (117)
T PRK10141 12 ILSDETRLGIVLLLRES-GELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLSP 75 (117)
T ss_pred HhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEECc
Confidence 34445788999999752 689999999999999999998676666555442222 223477765
No 323
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=84.36 E-value=0.52 Score=39.96 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=47.7
Q ss_pred HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhc
Q 041250 5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLK 71 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~ 71 (259)
..-+.+|+-.|.+ ||.|.+||-..+++++..+..=+.-+.-.+++ ..+++.|++|..++.++.
T Consensus 12 SekRk~lLllL~e--gPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV--~~~~~~Y~LS~~G~iiv~ 74 (260)
T COG4742 12 SEKRKDLLLLLKE--GPKTIEEIKNELNVSSSAILPQIKKLKDKGLV--VQEGDRYSLSSLGKIIVE 74 (260)
T ss_pred cHHHHHHHHHHHh--CCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCE--EecCCEEEecchHHHHHH
Confidence 4456778888887 89999999999999988876534444333332 567899999999996654
No 324
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=84.19 E-value=0.24 Score=32.90 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=38.7
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS 66 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~ 66 (259)
++.++..|.+ ++.|..+||+.+|++...+.+-++.+...++. ....+..|.+.+..
T Consensus 2 ~~~il~~L~~--~~~~~~eLa~~l~vS~~tv~~~l~~L~~~g~~-i~~~~~g~~l~~~~ 57 (69)
T TIGR00122 2 PLRLLALLAD--NPFSGEKLGEALGMSRTAVNKHIQTLREWGVD-VLTVGKGYRLPPPI 57 (69)
T ss_pred hHHHHHHHHc--CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCe-EEecCCceEecCcc
Confidence 3457778886 78999999999999999999877766544431 11124556665443
No 325
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=84.10 E-value=0.24 Score=31.21 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=28.3
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceecccc
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKL 47 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~ 47 (259)
.|+..|.+.++++|.++||+.++++.+.+.+-+..+..
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~ 41 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGVSRRTIRRDIKELRE 41 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35666743346799999999999999999986665543
No 326
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=84.08 E-value=0.27 Score=33.48 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=26.1
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceecccc
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKL 47 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~ 47 (259)
|+..|.. |+|+|+++||.++|.+...+...|..+..
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~~~e~v~~~L~~~p~ 64 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGWPVEEVRAALAAMPD 64 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT--HHHHHHHHHH-TT
T ss_pred HHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 5677886 79999999999999999999888876643
No 327
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=83.96 E-value=0.88 Score=41.64 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=64.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCC--eEEEeec-hHHHhhccc-CCC--CeE--EEeC-CCCC---CCC---CccEEee
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKL--ECTCFDL-PHVVNGLES-DLV--NLK--YVGG-DMFK---AIS---PAYAVLL 179 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~-~~~--ri~--~~~~-d~~~---~~~---~~D~~~~ 179 (259)
+..+.|+|.|.|.-..++....++. .++.+|. -.+...... ..+ .+. ++.. -|+. |.+ +||++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 5678999999888887777777764 3788887 444444433 111 111 1111 2332 332 4999999
Q ss_pred hhhhccCChH-HHHHHHHHHHH-hcccCCCCcEEEEEeeeec
Q 041250 180 KWILLDWNDE-ECVKILKKCKE-AITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 180 ~~vlh~~~d~-~~~~il~~~~~-~L~p~~~gg~lli~e~~~~ 219 (259)
+|++|..... ......++.++ ..++ |+.++|+|....
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~~ 319 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGTT 319 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCCc
Confidence 9999987643 34455666654 5566 899999986433
No 328
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=83.74 E-value=0.081 Score=35.10 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=35.1
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.|..++..|-.. ++.|+.|||+.+|++...+.+.|..|...+++
T Consensus 9 ~E~~vy~~Ll~~-~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV 52 (68)
T PF01978_consen 9 NEAKVYLALLKN-GPATAEEIAEELGISRSTVYRALKSLEEKGLV 52 (68)
T ss_dssp HHHHHHHHHHHH-CHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 455566666433 89999999999999999999999888766654
No 329
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=83.53 E-value=1.6 Score=37.64 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=52.4
Q ss_pred hHHHhhcccCCCCeEEEeCCCCC-----CCCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 147 PHVVNGLESDLVNLKYVGGDMFK-----AISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 147 ~~~~~~a~~~~~ri~~~~~d~~~-----~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+++-+.+++...||.++.+|+.+ |....|-|++..+-..++|.+...++.++.+.+.| |.++++-
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifR 365 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFR 365 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEe
Confidence 45555555567899999999987 22358999999998878999999999999999999 7776654
No 330
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=83.26 E-value=0.41 Score=37.35 Aligned_cols=47 Identities=11% Similarity=0.000 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS 66 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~ 66 (259)
++.|..+||+..++++..+.+++..|.-.+++.. ....|.|.++...
T Consensus 23 ~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~La~~p 70 (153)
T PRK11920 23 KLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVRLGRPA 70 (153)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeeecCCH
Confidence 5789999999999999999999998876665433 3456789887654
No 331
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=83.04 E-value=0.78 Score=32.60 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=33.4
Q ss_pred HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccc
Q 041250 5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK 46 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~ 46 (259)
.+.+.+|+..|-+ ++.|..|||+++|++...+.|.=+++.
T Consensus 41 l~~R~~i~~~Ll~--~~~tQrEIa~~lGiS~atIsR~sn~lk 80 (94)
T TIGR01321 41 LGDRIRIVNELLN--GNMSQREIASKLGVSIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHhCCChhhhhHHHhhcc
Confidence 4678899998876 799999999999999999988555544
No 332
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=83.00 E-value=0.16 Score=33.19 Aligned_cols=40 Identities=15% Similarity=0.361 Sum_probs=30.4
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS 49 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~ 49 (259)
.|.+.|....+|.+..|||+.+|++...++++|..|.--+
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG 43 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEG 43 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4566676633899999999999999999999998876543
No 333
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=82.55 E-value=0.42 Score=39.08 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=44.8
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC---CCCc----eeecCHhhhhhhc
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN---DEEQ----GYVLTNASKLLLK 71 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~---~~~~----~y~~t~~~~~l~~ 71 (259)
+..|+..|... ++.|+.|||+.+|+++..+.+.|+.|..-+++... ...| .|.+|+.+..+..
T Consensus 3 r~~IL~~L~~~-~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 3 KEDILSYLLKQ-GQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 34567777654 78999999999999999999988887665544211 1122 3789988875443
No 334
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=82.31 E-value=0.63 Score=35.69 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=40.9
Q ss_pred hhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 14 IINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 14 ~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
.+.. +++.++.+||+.+++++..+.+.++.|..-+++. ....+.|.+|+.++.+
T Consensus 16 l~~~-~~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~-~~~~~~i~LT~~G~~~ 69 (142)
T PRK03902 16 LIEE-KGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLI-YEKYRGLVLTPKGKKI 69 (142)
T ss_pred HHhc-CCCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEE-EecCceEEECHHHHHH
Confidence 3443 3789999999999999999999888877666542 1244679999988643
No 335
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=82.22 E-value=0.33 Score=39.67 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=42.5
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-CCceeecCHh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-EEQGYVLTNA 65 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-~~~~y~~t~~ 65 (259)
+..++..|... ++.+..|||+.+++++..+.+.+..|...+++.... ....|.+|+.
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~r~~~~~lT~~ 202 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGRKGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCCccEEEeCCC
Confidence 45677777764 689999999999999999999888877665542222 4556888764
No 336
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=82.11 E-value=2.1 Score=36.26 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=54.3
Q ss_pred CCeEEEecCCchHHHHHH---HHHC--CCCeEEEeec----hHHHhh-----------------------ccc-------
Q 041250 115 LNSLVDVGGGTGTAAKAI---AKAF--PKLECTCFDL----PHVVNG-----------------------LES------- 155 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l---~~~~--p~~~~~~~D~----~~~~~~-----------------------a~~------- 155 (259)
+..|+++|+=.|..++.+ ++.+ ++-++.++|- |+.-.. .++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 568999999999766544 3333 4557999984 332210 000
Q ss_pred CCCCeEEEeCCCCCCCCC--ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 156 DLVNLKYVGGDMFKAISP--AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 156 ~~~ri~~~~~d~~~~~~~--~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
..++++++.|.|.+.+|. .+-|-+-++=-||-+. ....|..++..|.| ||.|++-|+..
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~---GGiIi~DDY~~ 215 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSP---GGIIIFDDYGH 215 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEE---EEEEEESSTTT
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCC---CeEEEEeCCCC
Confidence 246999999999774442 1112111111133333 46789999999999 77666666544
No 337
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=81.86 E-value=0.68 Score=29.39 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=36.9
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCH
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTN 64 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~ 64 (259)
|+..|.. ++.|..+|++.+++++..+.+.++.+...+++... .....|.++.
T Consensus 2 il~~l~~--~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 55 (66)
T smart00418 2 ILKLLAE--GELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYSLTD 55 (66)
T ss_pred HHHHhhc--CCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEEEch
Confidence 4455653 78999999999999999999988877665544221 2334566665
No 338
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=81.36 E-value=2.2 Score=35.76 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=46.6
Q ss_pred HHHHHhcccccCCC--CeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhh-cc-------c-------CCCCeEEEe
Q 041250 102 SVMIQKCKNVFEGL--NSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG-LE-------S-------DLVNLKYVG 164 (259)
Q Consensus 102 ~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~-a~-------~-------~~~ri~~~~ 164 (259)
+.+++... +.+. .+|||.=+|-|.=+.-++.. +.++++++..+++.. .+ + ...|++++.
T Consensus 63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 55677766 4443 48999999999999998865 678999998544432 11 1 135999999
Q ss_pred CCCCC--CCC--CccEEeehhhhc
Q 041250 165 GDMFK--AIS--PAYAVLLKWILL 184 (259)
Q Consensus 165 ~d~~~--~~~--~~D~~~~~~vlh 184 (259)
+|..+ ..+ .+|+|++--.+.
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S--
T ss_pred CCHHHHHhhcCCCCCEEEECCCCC
Confidence 99888 332 599999865443
No 339
>PRK01381 Trp operon repressor; Provisional
Probab=81.08 E-value=1.1 Score=32.02 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=33.7
Q ss_pred HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccc
Q 041250 5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK 46 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~ 46 (259)
.+.+++|+..|-. |+.|..|||+.+|++...+.|-=+++.
T Consensus 41 l~~R~~I~~~L~~--g~~sQREIa~~lGvSiaTITRgsn~Lk 80 (99)
T PRK01381 41 LGTRVRIVEELLR--GELSQREIKQELGVGIATITRGSNSLK 80 (99)
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHhCCceeeehhhHHHhc
Confidence 4678999999987 899999999999999999888555443
No 340
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=80.47 E-value=0.56 Score=35.99 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS 66 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~ 66 (259)
.+.|..+||+..|+++..++++|..|..-+++.. ...+|.|.+....
T Consensus 24 ~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~ 71 (141)
T PRK11014 24 RMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPA 71 (141)
T ss_pred CccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecCCH
Confidence 5789999999999999999999998877665532 3455678776543
No 341
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.40 E-value=19 Score=31.71 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=67.7
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCC-----CCC----CC--CccEE
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDM-----FKA----IS--PAYAV 177 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~-----~~~----~~--~~D~~ 177 (259)
+....++|=+|+|. |.++...++.+...++++.|+ ++-++.|++. .+.+......- .+. .. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 55678999999996 777777888888889999999 8999999982 22222222211 110 11 26766
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK 223 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~ 223 (259)
+-...++ .-++....++++ ||.+++.....+.-..
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~~~~f 281 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAEEIQF 281 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc---CCEEEEeccCCCcccc
Confidence 6555443 345556778898 8998888876555443
No 342
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=79.81 E-value=0.53 Score=35.49 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCH
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTN 64 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~ 64 (259)
++.|+.|||+++++++..+.++++.|...+++.. ....+.|.+..
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRGVEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCCCCCChhhcC
Confidence 6899999999999999999999998877766532 22345676654
No 343
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=79.67 E-value=0.51 Score=27.91 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHcCCCccccccceecc
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
.+.|+++||..+|+++..+.|.|+..
T Consensus 7 ~~~~l~~iA~~~g~S~~~f~r~Fk~~ 32 (42)
T PF00165_consen 7 QKLTLEDIAEQAGFSPSYFSRLFKKE 32 (42)
T ss_dssp SS--HHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999999988754
No 344
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=79.52 E-value=3.1 Score=38.40 Aligned_cols=134 Identities=14% Similarity=0.115 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C
Q 041250 83 SKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D 156 (259)
Q Consensus 83 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~ 156 (259)
|+..-.|++.|.+.-.......-.. ......++=||=|.|.+...+....|..+++.+.+ |++++.|++ .
T Consensus 268 ~~l~s~~h~~m~~g~aL~~n~~~~~----~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q 343 (482)
T KOG2352|consen 268 PELASQYHQMMIGGLALIMNRPPQK----LDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ 343 (482)
T ss_pred cccCcchhhhhhccceeccccCchh----ccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh
Confidence 4445567777766544432222222 23345677777777999999999999999999998 999999987 2
Q ss_pred CCCeEEEeCCCCC----C------CCCccEEeeh------hhhccCC-hHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 157 LVNLKYVGGDMFK----A------ISPAYAVLLK------WILLDWN-DEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 157 ~~ri~~~~~d~~~----~------~~~~D~~~~~------~vlh~~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
.+|..++..|-.. . ...+|+++.- +-+.+-+ .--+..+|+.++.+|+| .|.+ ++..+..
T Consensus 344 ~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f-~inlv~r 419 (482)
T KOG2352|consen 344 SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPP---RGMF-IINLVTR 419 (482)
T ss_pred hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCc---cceE-EEEEecC
Confidence 3345555444432 1 1137877653 2222222 23345789999999999 6766 5555555
Q ss_pred CCCCC
Q 041250 220 NRKKD 224 (259)
Q Consensus 220 ~~~~~ 224 (259)
+....
T Consensus 420 ~~~~~ 424 (482)
T KOG2352|consen 420 NSSFK 424 (482)
T ss_pred Ccchh
Confidence 44433
No 345
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=79.47 E-value=0.42 Score=30.57 Aligned_cols=39 Identities=8% Similarity=0.157 Sum_probs=31.9
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS 49 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~ 49 (259)
.|.+.|.+. +.+|++|||+.+|+++..++|=|..+...+
T Consensus 4 ~Il~~l~~~-~~~s~~ela~~~~VS~~TiRRDl~~L~~~g 42 (57)
T PF08220_consen 4 QILELLKEK-GKVSVKELAEEFGVSEMTIRRDLNKLEKQG 42 (57)
T ss_pred HHHHHHHHc-CCEEHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 356778775 899999999999999999999777765544
No 346
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=79.10 E-value=0.39 Score=31.95 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=29.0
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS 49 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~ 49 (259)
|-+.|.+. +.+|..|||..+++++..+..+|..+...|
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG 42 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGISPEAVEAMLEQLIRKG 42 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT--HHHHHHHHHHHHCCT
T ss_pred HHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 55677764 789999999999999999999888776554
No 347
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=78.90 E-value=4.2 Score=32.71 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=58.2
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------------CCCCeEEEeCCCCCCCCCccEE
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------------DLVNLKYVGGDMFKAISPAYAV 177 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~ri~~~~~d~~~~~~~~D~~ 177 (259)
+|.=+|.|.=.+..+++-+.-+.+++++|. ++.++...+ ...|+.+. .|+.+....+|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 456678887666666555555789999999 776666554 12333333 1111112357888
Q ss_pred eehhh-hc-cC---ChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 178 LLKWI-LL-DW---NDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 178 ~~~~v-lh-~~---~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
+++-- -. .. +-......++.+.+.+++ +.++|++...+..-
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvppGt 126 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPPGT 126 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSSTTH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEEee
Confidence 87642 21 11 124467789999999997 88888888776653
No 348
>PHA00738 putative HTH transcription regulator
Probab=78.44 E-value=0.52 Score=34.25 Aligned_cols=59 Identities=7% Similarity=-0.015 Sum_probs=42.7
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNAS 66 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~ 66 (259)
.+..|++.|.. +++.++.+|++.++++...+++=|..|...+++..+ ...-.|++.+..
T Consensus 13 tRr~IL~lL~~-~e~~~V~eLae~l~lSQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~ 73 (108)
T PHA00738 13 LRRKILELIAE-NYILSASLISHTLLLSYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHH-cCCccHHHHHHhhCCCHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCc
Confidence 67889999987 247999999999999999999866666555544322 233457776544
No 349
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=78.34 E-value=1.4 Score=36.60 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=34.0
Q ss_pred HHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCcccccc
Q 041250 2 TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC 40 (259)
Q Consensus 2 aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ 40 (259)
||...++..|.+.|+.. +|..+.|||+++|++...+..
T Consensus 19 alaS~vRv~Il~lL~~k-~plNvneiAe~lgLpqst~s~ 56 (308)
T COG4189 19 ALASKVRVAILQLLHRK-GPLNVNEIAEALGLPQSTMSA 56 (308)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCchhhhhh
Confidence 57788999999999985 899999999999999988775
No 350
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=78.24 E-value=3.7 Score=36.79 Aligned_cols=37 Identities=24% Similarity=0.562 Sum_probs=31.3
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHH
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHV 149 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~ 149 (259)
+.+...++|+|.|.|.++.-+.-.| ++++.++|-.+.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~ 187 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQR 187 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchH
Confidence 5678899999999999999888777 689999997433
No 351
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=78.05 E-value=13 Score=31.84 Aligned_cols=79 Identities=10% Similarity=-0.014 Sum_probs=46.7
Q ss_pred eEEEecCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHH
Q 041250 117 SLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVK 193 (259)
Q Consensus 117 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~ 193 (259)
+|.=||+|. |.++..+.++ +.+++++|. ++.++.+.+. ..+.....+. +...++|+++++ .+.....+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~-g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIER-GLVDEASTDL-SLLKDCDLVILA-----LPIGLLLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC-CCcccccCCH-hHhcCCCEEEEc-----CCHHHHHH
Confidence 345567664 4444555444 457999998 6666665532 1111111111 123358998887 56666778
Q ss_pred HHHHHHHhccc
Q 041250 194 ILKKCKEAITR 204 (259)
Q Consensus 194 il~~~~~~L~p 204 (259)
+++++...+++
T Consensus 73 ~~~~l~~~l~~ 83 (279)
T PRK07417 73 PSEQLIPALPP 83 (279)
T ss_pred HHHHHHHhCCC
Confidence 88999888887
No 352
>PRK11050 manganese transport regulator MntR; Provisional
Probab=77.62 E-value=0.92 Score=35.33 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=42.2
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
|...+.. +++.+..+||+.+++++..+.+.+..+...+++. ......+.+|+.++.+
T Consensus 42 I~~~l~~-~~~~t~~eLA~~l~is~stVsr~l~~Le~~GlI~-r~~~~~v~LT~~G~~l 98 (152)
T PRK11050 42 IADLIAE-VGEARQVDIAARLGVSQPTVAKMLKRLARDGLVE-MRPYRGVFLTPEGEKL 98 (152)
T ss_pred HHHHHHh-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EecCCceEECchHHHH
Confidence 3445554 3789999999999999999999888877665541 2233568888888754
No 353
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=77.42 E-value=1.2 Score=34.83 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhh
Q 041250 19 GKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKL 68 (259)
Q Consensus 19 ~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~ 68 (259)
.+++...+||+.++++|..+...+.-|...+++. ....+.+.+|+.++.
T Consensus 22 ~~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~-~~~y~gi~LT~~G~~ 70 (154)
T COG1321 22 KGFARTKDIAERLKVSPPSVTEMLKRLERLGLVE-YEPYGGVTLTEKGRE 70 (154)
T ss_pred cCcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeE-EecCCCeEEChhhHH
Confidence 4899999999999999999998888887776652 235577999987763
No 354
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=77.17 E-value=5.6 Score=29.28 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=55.3
Q ss_pred CchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC--CCCC---C-CC--CccEEeehhhhccCChHHHHHH
Q 041250 124 GTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG--DMFK---A-IS--PAYAVLLKWILLDWNDEECVKI 194 (259)
Q Consensus 124 G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--d~~~---~-~~--~~D~~~~~~vlh~~~d~~~~~i 194 (259)
|.|..+..+++... .++++.|. +.-.+.+++......+-.. |+.+ . .+ ++|+++-.- +. ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g~---~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----GS---GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----SS---HHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEec-----Cc---HHH
Confidence 46899999999987 89999998 6677777763311112111 1111 1 22 488877552 21 247
Q ss_pred HHHHHHhcccCCCCcEEEEEeeee
Q 041250 195 LKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 195 l~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
++...+.++| +|+++++-...
T Consensus 72 ~~~~~~~l~~---~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRP---GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEE---EEEEEEESSTS
T ss_pred HHHHHHHhcc---CCEEEEEEccC
Confidence 8888899999 99999988765
No 355
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.95 E-value=4.9 Score=29.11 Aligned_cols=82 Identities=22% Similarity=0.298 Sum_probs=49.1
Q ss_pred CCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC--C---C--CccEEeehhhhccCChHHHH
Q 041250 123 GGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA--I---S--PAYAVLLKWILLDWNDEECV 192 (259)
Q Consensus 123 gG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~---~--~~D~~~~~~vlh~~~d~~~~ 192 (259)
||.|.++..+++.. .+.+++++|. ++.++.+++.. +.++.||..++ + . +++.+++.. -+|+...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----~~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILT----DDDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEES----SSHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEcc----CCHHHHH
Confidence 45566777776632 3457999998 77777777433 78999999983 1 1 477666552 1445454
Q ss_pred HHHHHHHHhcccCCCCcEEEEE
Q 041250 193 KILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 193 ~il~~~~~~L~p~~~gg~lli~ 214 (259)
.+...+ +.+.| ..+++..
T Consensus 78 ~~~~~~-r~~~~---~~~ii~~ 95 (116)
T PF02254_consen 78 LIALLA-RELNP---DIRIIAR 95 (116)
T ss_dssp HHHHHH-HHHTT---TSEEEEE
T ss_pred HHHHHH-HHHCC---CCeEEEE
Confidence 554444 55555 4665543
No 356
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.89 E-value=7.8 Score=33.41 Aligned_cols=81 Identities=17% Similarity=0.042 Sum_probs=51.2
Q ss_pred eEEEecCC--chHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEe-CCC-CCCCCCccEEeehhhhccCChHHH
Q 041250 117 SLVDVGGG--TGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG-GDM-FKAISPAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 117 ~vlDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~-~d~-~~~~~~~D~~~~~~vlh~~~d~~~ 191 (259)
+|+=+|.| -|.++..+.++.+...+++.|. ...+..+.+. .+.... .+. ......+|+|+++ .|-...
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l--gv~d~~~~~~~~~~~~~aD~Viva-----vPi~~~ 77 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL--GVIDELTVAGLAEAAAEADLVIVA-----VPIEAT 77 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc--CcccccccchhhhhcccCCEEEEe-----ccHHHH
Confidence 44555544 4666667777777778899998 4555555531 111111 222 2244568999988 555667
Q ss_pred HHHHHHHHHhccc
Q 041250 192 VKILKKCKEAITR 204 (259)
Q Consensus 192 ~~il~~~~~~L~p 204 (259)
..+++++...|++
T Consensus 78 ~~~l~~l~~~l~~ 90 (279)
T COG0287 78 EEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHhcccCCC
Confidence 7889999988888
No 357
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=76.74 E-value=0.61 Score=30.64 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=39.9
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCH
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTN 64 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~ 64 (259)
.+..|+..+.. ++.+..||++.++++...+.+.++.+...+++... .....|.+++
T Consensus 8 ~~~~il~~l~~--~~~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 8 TRLRILRLLLE--GPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHH--CCcCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 44556777776 45999999999999999999988877655443211 2345677775
No 358
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=76.52 E-value=0.93 Score=34.05 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=31.0
Q ss_pred Ccchhhh-cCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 10 GIPDIIN-KHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 10 ~lf~~L~-~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.++..|- .+ +|.|+++||+.++.+...+++-|+-|...|++
T Consensus 31 ~v~~~LL~~~-~~~tvdelae~lnr~rStv~rsl~~L~~~GlV 72 (126)
T COG3355 31 EVYKALLEEN-GPLTVDELAEILNRSRSTVYRSLQNLLEAGLV 72 (126)
T ss_pred HHHHHHHhhc-CCcCHHHHHHHHCccHHHHHHHHHHHHHcCCe
Confidence 3444444 33 89999999999999999999977766655544
No 359
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=76.22 E-value=0.7 Score=33.42 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=35.6
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
.+..|+..|..+ ++.|..+||+.+|+++..+.+.++.+...++
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~ 46 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGLSPSTVHNRVKRLEEEGV 46 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 466788888875 7899999999999999999998877765443
No 360
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=75.83 E-value=18 Score=31.31 Aligned_cols=84 Identities=14% Similarity=0.018 Sum_probs=46.1
Q ss_pred CCeEEEecCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHH
Q 041250 115 LNSLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 115 ~~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~ 191 (259)
..+|.=||+|. +.++..+.+.....+++++|. ++..+.+++...... ...+..+....+|+|++.- +....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~~~~~aDvViiav-----p~~~~ 79 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDR-VTTSAAEAVKGADLVILCV-----PVGAS 79 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCce-ecCCHHHHhcCCCEEEECC-----CHHHH
Confidence 35688888776 233344444332247889998 566666553211111 1112111234589888773 33444
Q ss_pred HHHHHHHHHhccc
Q 041250 192 VKILKKCKEAITR 204 (259)
Q Consensus 192 ~~il~~~~~~L~p 204 (259)
..+++.+...+++
T Consensus 80 ~~v~~~l~~~l~~ 92 (307)
T PRK07502 80 GAVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHHhhCCC
Confidence 5677777777887
No 361
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=75.45 E-value=2.4 Score=36.38 Aligned_cols=176 Identities=12% Similarity=0.025 Sum_probs=96.0
Q ss_pred CCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCC---C----------------------
Q 041250 22 MTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPL---S---------------------- 76 (259)
Q Consensus 22 ~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~---~---------------------- 76 (259)
.+.-.|+....++.+.+..++..+.-.+++ ..+.+...+|..++-|+..-.. .
T Consensus 35 ~d~wkIvd~s~~plp~v~~i~~~l~~egiv--~~~~g~v~~TekG~E~~e~~gi~~~~~~~C~~CeGrgi~l~~f~dll~ 112 (354)
T COG1568 35 NDFWKIVDYSDLPLPLVASILEILEDEGIV--KIEEGGVELTEKGEELAEELGIKKKYDYTCECCEGRGISLQAFKDLLE 112 (354)
T ss_pred cchHhhhhhccCCchHHHHHHHHHHhcCcE--EEecCcEeehhhhHHHHHHhCCCccccccccCcCCccccchhHHHHHH
Confidence 388889999999888887777665544433 3345558889888766642111 1
Q ss_pred ---chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhh
Q 041250 77 ---EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG 152 (259)
Q Consensus 77 ---~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~ 152 (259)
+|.+..|+-...+.+....--... ..+.=.+...--....|+-+| -.-..+++++-..---++.++|+ ...+..
T Consensus 113 kf~eiaK~RP~p~~~yDQgfvTpEttv-~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~f 190 (354)
T COG1568 113 KFREIAKDRPEPLHQYDQGFVTPETTV-SRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKF 190 (354)
T ss_pred HHHHHHhcCCCcchhccccccccccee-eeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHH
Confidence 222233333333332211100000 000001110012245688888 55566666655442337899998 444443
Q ss_pred c----cc-CCCCeEEEeCCCCCCCC-----CccEEeehhhhccCChHHHHHHHHHHHHhccc
Q 041250 153 L----ES-DLVNLKYVGGDMFKAIS-----PAYAVLLKWILLDWNDEECVKILKKCKEAITR 204 (259)
Q Consensus 153 a----~~-~~~ri~~~~~d~~~~~~-----~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p 204 (259)
. ++ ...+++.+..|..+|+| .||+++.-..-. -.....++.+=..+|+.
T Consensus 191 i~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeT---i~alk~FlgRGI~tLkg 249 (354)
T COG1568 191 IEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPET---IKALKLFLGRGIATLKG 249 (354)
T ss_pred HHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchhh---HHHHHHHHhccHHHhcC
Confidence 3 33 56779999999999988 389876532110 01123345555567775
No 362
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.44 E-value=8.2 Score=33.82 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=60.8
Q ss_pred EEEecCCchHHHHHHHHHCCCCeE-EEeec-hHHHhhcccCCCCeEEEeCCCCC----CCCCccEEeehhhhccCC----
Q 041250 118 LVDVGGGTGTAAKAIAKAFPKLEC-TCFDL-PHVVNGLESDLVNLKYVGGDMFK----AISPAYAVLLKWILLDWN---- 187 (259)
Q Consensus 118 vlDvGgG~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~~~~ri~~~~~d~~~----~~~~~D~~~~~~vlh~~~---- 187 (259)
|+|+=||.|.+...+.++ +.++ ...|+ +.+++..+...+. .+..+|+.+ ..|.+|+++...-+..++
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 589999999999999877 3664 45887 6666655542222 445677766 245688888776555553
Q ss_pred ----hHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 188 ----DEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 188 ----d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
++..-.++....+.++.. .-+++++|.+..
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~--~P~~~v~ENV~~ 111 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEK--KPKFFLLENVKG 111 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhc--CCCEEEeeccHH
Confidence 122224555555544321 236889998754
No 363
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=75.37 E-value=12 Score=28.12 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=45.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCC----CccEEeehhhhccCChHH
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAIS----PAYAVLLKWILLDWNDEE 190 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D~~~~~~vlh~~~d~~ 190 (259)
..++++||-|.=.-....++++ +..+++.|+.+. .....+.++.-|.|+|.. ++|++..-+ |..+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~-----~a~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP~E 82 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR-----KAPEGVNFVVDDIFNPNLEIYEGADLIYSIR-----PPPE 82 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------TT
T ss_pred CCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc-----ccccCcceeeecccCCCHHHhcCCcEEEEeC-----CChH
Confidence 5599999988876666555554 388999998333 123688999999999643 588877664 2333
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 191 CVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 191 ~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
...-+.++++.. |.-++|.-.
T Consensus 83 l~~~il~lA~~v-----~adlii~pL 103 (127)
T PF03686_consen 83 LQPPILELAKKV-----GADLIIRPL 103 (127)
T ss_dssp SHHHHHHHHHHH-----T-EEEEE-B
T ss_pred HhHHHHHHHHHh-----CCCEEEECC
Confidence 445555666655 355555544
No 364
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=75.31 E-value=1.1 Score=34.28 Aligned_cols=62 Identities=15% Similarity=0.041 Sum_probs=44.8
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCC---ceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEE---QGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~---~~y~~t~~~~~l~ 70 (259)
+..|+..|... +++|..|||+.+++++..+.++++.+..-+++... ..+ -...+|+.++.+.
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 34456667653 78999999999999999999999887766654321 122 2468888888554
No 365
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=75.23 E-value=1.8 Score=30.51 Aligned_cols=64 Identities=11% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHHcCcchhhhcC-CCCCCHHHHHHHcCCCccccccceec----------cccccCCCC---CCCCceeecCHhhhhh
Q 041250 6 AFQLGIPDIINKH-GKPMTLNELVSALTINLSKTQCFFAQ----------QKLVSSGNN---NDEEQGYVLTNASKLL 69 (259)
Q Consensus 6 a~~l~lf~~L~~~-~~~~t~~elA~~~~~~~~~l~~ll~~----------~~~~~~~~~---~~~~~~y~~t~~~~~l 69 (259)
=++..|+..|..+ +.+.++.|||..+++++..+..-|.. |..++++.. ......|++|+.+..+
T Consensus 9 ~~R~~vl~~L~~~yp~~~~~~eIar~v~~~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~G~~~ 86 (90)
T PF07381_consen 9 KVRKKVLEYLCSIYPEPAYPSEIARSVGSDYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEKGKRI 86 (90)
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHHCCCHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChhhhhH
Confidence 3566788888875 57899999999999999988764432 233444411 1233479999987644
No 366
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=74.86 E-value=0.65 Score=28.40 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=30.0
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS 49 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~ 49 (259)
+++.|.++ ++.|+.+|++.+++++..+.+.+..+...+
T Consensus 5 il~~l~~~-~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g 42 (53)
T smart00420 5 ILELLAQQ-GKVSVEELAELLGVSEMTIRRDLNKLEEQG 42 (53)
T ss_pred HHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 45566654 679999999999999999999877765443
No 367
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=74.82 E-value=6.5 Score=30.52 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=47.4
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------CCCCeEEEeCCCCCCCCCccEEeehhhh
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFKAISPAYAVLLKWIL 183 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~~~~~~D~~~~~~vl 183 (259)
+|.=+|+|.+..+.+..-..-+.++++... ++.++..++ ...++.+ ..|+.+-..++|++++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiia--- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIA--- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE----
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEec---
Confidence 356688888877777544444567888887 444444332 1123332 22332223468988876
Q ss_pred ccCChHHHHHHHHHHHHhccc
Q 041250 184 LDWNDEECVKILKKCKEAITR 204 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p 204 (259)
.|-.....+++++...+++
T Consensus 77 --vPs~~~~~~~~~l~~~l~~ 95 (157)
T PF01210_consen 77 --VPSQAHREVLEQLAPYLKK 95 (157)
T ss_dssp --S-GGGHHHHHHHHTTTSHT
T ss_pred --ccHHHHHHHHHHHhhccCC
Confidence 3333356789999999987
No 368
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=74.41 E-value=5.8 Score=38.50 Aligned_cols=92 Identities=21% Similarity=0.193 Sum_probs=59.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHC-------C-----CCeEEEeec-h---HHHhhcc-----------c-----------
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAF-------P-----KLECTCFDL-P---HVVNGLE-----------S----------- 155 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~-----------~----------- 155 (259)
..-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+- +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34789999999999888877544 4 468899885 2 2221110 0
Q ss_pred ------CCC--CeEEEeCCCCCC---CC-CccEEeehh-----hhccCChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 156 ------DLV--NLKYVGGDMFKA---IS-PAYAVLLKW-----ILLDWNDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 156 ------~~~--ri~~~~~d~~~~---~~-~~D~~~~~~-----vlh~~~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
... ++++..||+.+. +. .+|++++-- .-..|+. .+|+.+++.++| ||++.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~----~~~~~l~~~~~~---~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSP----NLFNALARLARP---GATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccH----HHHHHHHHHhCC---CCEEE
Confidence 112 334566888762 22 489888652 1122544 589999999999 78766
No 369
>PRK13239 alkylmercury lyase; Provisional
Probab=74.30 E-value=1.6 Score=35.78 Aligned_cols=41 Identities=15% Similarity=0.335 Sum_probs=34.4
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccc
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLV 48 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~ 48 (259)
+..-|+..|.+ |+|.|+++||+.+|++...++..|..+...
T Consensus 23 ~~~~llr~la~-G~pvt~~~lA~~~~~~~~~v~~~L~~l~~~ 63 (206)
T PRK13239 23 LLVPLLRLLAK-GRPVSVTTLAAALGWPVEEVEAVLEAMPDT 63 (206)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHhCCCHHHHHHHHHhCCCe
Confidence 34456777885 799999999999999999999999887654
No 370
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=74.27 E-value=18 Score=34.05 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=60.8
Q ss_pred CCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCC-eEEEe---------------CCCC-------
Q 041250 114 GLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVN-LKYVG---------------GDMF------- 168 (259)
Q Consensus 114 ~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~r-i~~~~---------------~d~~------- 168 (259)
.+.+|+=+|+|. |..++..++... .+++++|. ++..+++++...+ +.+-. .++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 468999999996 666667777764 48999998 8888888874333 21111 1110
Q ss_pred CC-CCCccEEeehhhhccCChHHHHHH-HHHHHHhcccCCCCcEEEEEee
Q 041250 169 KA-ISPAYAVLLKWILLDWNDEECVKI-LKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 169 ~~-~~~~D~~~~~~vlh~~~d~~~~~i-l~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+ ..++|+++-..- ++...+..+ .+...+.++| ||.++.+-.
T Consensus 243 ~~~~~gaDVVIetag---~pg~~aP~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTAL---IPGKPAPKLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCC---CCcccCcchHHHHHHHhcCC---CCEEEEEcc
Confidence 11 135898876642 222212234 5899999999 898766543
No 371
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=73.10 E-value=0.42 Score=30.70 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=33.4
Q ss_pred HHcCcchhhhcCCCC-CCHHHHHHHcCCCccccccceeccccccCC
Q 041250 7 FQLGIPDIINKHGKP-MTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~-~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.++.++..|...+++ .|+.|||+.+++++..+.+++..+...+++
T Consensus 6 ~q~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv 51 (62)
T PF12802_consen 6 SQFRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLV 51 (62)
T ss_dssp HHHHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 345566677764222 899999999999999999999887766543
No 372
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=72.72 E-value=19 Score=34.63 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=53.7
Q ss_pred eEEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhccC
Q 041250 117 SLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILLDW 186 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh~~ 186 (259)
+|+=+| .|.++..+++. ..+.+++++|. |+.++.+++ .....+.||..++ ..++|+++... -
T Consensus 402 ~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vv~~~----~ 473 (601)
T PRK03659 402 QVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK--YGYKVYYGDATQLELLRAAGAEKAEAIVITC----N 473 (601)
T ss_pred CEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe----C
Confidence 455454 55666666553 23568999998 888888774 3567889999873 12478766651 2
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
+++.+..+...+++ +.| ..+++.
T Consensus 474 d~~~n~~i~~~~r~-~~p---~~~Iia 496 (601)
T PRK03659 474 EPEDTMKIVELCQQ-HFP---HLHILA 496 (601)
T ss_pred CHHHHHHHHHHHHH-HCC---CCeEEE
Confidence 34555566665554 566 566665
No 373
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=72.60 E-value=22 Score=31.97 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=67.0
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHH----HHHHHHHC---CCCeEEEeechH-----HHhhccc--------CCCCe
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTA----AKAIAKAF---PKLECTCFDLPH-----VVNGLES--------DLVNL 160 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~----~~~l~~~~---p~~~~~~~D~~~-----~~~~a~~--------~~~ri 160 (259)
.+.|++.+. -....+|||+|.|.|.- ..+|+.+. |.+++|+++.|. .++.+.+ ..-..
T Consensus 99 NqaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f 176 (374)
T PF03514_consen 99 NQAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF 176 (374)
T ss_pred hHHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE
Confidence 467788877 56778999999999864 44445443 788999999832 2222221 33344
Q ss_pred EEEeC--CCCCCC--------C-CccEEeehhhhccCChH------HHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 161 KYVGG--DMFKAI--------S-PAYAVLLKWILLDWNDE------ECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 161 ~~~~~--d~~~~~--------~-~~D~~~~~~vlh~~~d~------~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
+|... +-.+.. + .+=+|-+...||+..++ ....+|+.+ +.|+| -.++++|.-.+.
T Consensus 177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P----~vvv~~E~ea~~ 248 (374)
T PF03514_consen 177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNP----KVVVLVEQEADH 248 (374)
T ss_pred EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCC----CEEEEEeecCCC
Confidence 55442 222211 1 12334455677887632 234566655 47899 677888876554
No 374
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=72.41 E-value=0.3 Score=33.71 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=41.5
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CC----CceeecCHhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DE----EQGYVLTNASK 67 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~----~~~y~~t~~~~ 67 (259)
++++|...|... +.++..+|.+.+|++...+++-|..+...+++..+ .. .-.|++|+.++
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 467788888874 78999999999999999999977776555443211 11 22599999886
No 375
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.94 E-value=39 Score=29.63 Aligned_cols=93 Identities=11% Similarity=0.052 Sum_probs=53.5
Q ss_pred CCCCeEEEecCC-chHHHHHHHHH-CCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChH
Q 041250 113 EGLNSLVDVGGG-TGTAAKAIAKA-FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDE 189 (259)
Q Consensus 113 ~~~~~vlDvGgG-~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~ 189 (259)
....+||=+|+| .|.++..++++ ....+++++|. ++-++.+++ .+.. ....++. ...++|+++-.-- ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~-~~~~~~~-~~~g~d~viD~~G-~~---- 233 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADET-YLIDDIP-EDLAVDHAFECVG-GR---- 233 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCce-eehhhhh-hccCCcEEEECCC-CC----
Confidence 446778878854 45555676775 55668888887 555666653 2211 1111111 1124777763321 10
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 190 ECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 190 ~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.....++...+.+++ +|+++++-.
T Consensus 234 ~~~~~~~~~~~~l~~---~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIRP---QGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCcC---CcEEEEEee
Confidence 012457778889999 999988764
No 376
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=71.74 E-value=1.8 Score=32.04 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=37.0
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK 67 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~ 67 (259)
.+..+|.+. ||.+..+|++.++++ ....+|.-...-.|. ..+.|.|.+|+.++
T Consensus 63 ~~A~~L~~~-Gp~~~~~l~~~~~~~--~A~~IL~~N~YGWFe--Rv~rGvY~LT~~G~ 115 (118)
T PF09929_consen 63 RCAAALAEH-GPSRPADLRKATGVP--KATSILRDNHYGWFE--RVERGVYALTPAGR 115 (118)
T ss_pred HHHHHHHHc-CCCCHHHHHHhcCCC--hHHHHHHhCccccee--eeccceEecCcchh
Confidence 345677754 899999999999887 344566544322221 35779999999876
No 377
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=71.56 E-value=2 Score=32.74 Aligned_cols=61 Identities=13% Similarity=0.038 Sum_probs=43.1
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CC---CceeecCHhhhhhhc
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DE---EQGYVLTNASKLLLK 71 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~---~~~y~~t~~~~~l~~ 71 (259)
++..|...+++.|..|||+.+++++..+.++++.+..-+++... .. .-...+|+.++.+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 45566543346899999999999999999998887766654321 12 235788999885543
No 378
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=71.24 E-value=1.8 Score=34.09 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=33.4
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccc
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK 46 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~ 46 (259)
..+..|+..|..+ +.+|..|||+++|+++..+.+=++.|.
T Consensus 14 ~~D~~IL~~Lq~d-~R~s~~eiA~~lglS~~tv~~Ri~rL~ 53 (164)
T PRK11169 14 RIDRNILNELQKD-GRISNVELSKRVGLSPTPCLERVRRLE 53 (164)
T ss_pred HHHHHHHHHhccC-CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4678899999986 899999999999999999877555544
No 379
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.03 E-value=13 Score=33.96 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=70.6
Q ss_pred CCeEEEec---CC----chHHHHHHHHHCCCCeEEEeec--hHHHhhccc--CCCCeEEEeCCCCC-CCC----------
Q 041250 115 LNSLVDVG---GG----TGTAAKAIAKAFPKLECTCFDL--PHVVNGLES--DLVNLKYVGGDMFK-AIS---------- 172 (259)
Q Consensus 115 ~~~vlDvG---gG----~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~--~~~ri~~~~~d~~~-~~~---------- 172 (259)
+..|+=+| +| .|-++..+.++....=.+..|. |.++++.+. ..-+|.|...+-.. |..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH
Confidence 45566665 33 3445555555444444788887 999999887 34455565543222 320
Q ss_pred --CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 173 --PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 173 --~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
.+|++++-..=.+.-|++...=+++++++++| .-.|+|+|.....+.
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P---~E~llVvDam~GQdA 228 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP---DETLLVVDAMIGQDA 228 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC---CeEEEEEecccchHH
Confidence 37999887766555677777778999999999 799999998776653
No 380
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=70.83 E-value=0.36 Score=30.75 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=33.9
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.++.++..|.+. ++.|..+||+.+++++..+.++++.|..-+++
T Consensus 4 ~q~~iL~~l~~~-~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I 47 (59)
T PF01047_consen 4 SQFRILRILYEN-GGITQSELAEKLGISRSTVTRIIKRLEKKGLI 47 (59)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCE
Confidence 345566667765 78999999999999999999988887665543
No 381
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=70.71 E-value=8.5 Score=30.81 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=30.5
Q ss_pred CccEEeehhhhccCCh----------HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 PAYAVLLKWILLDWND----------EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d----------~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+.|+|++++.|||++. +...++++++.++|+| ..+++...+.
T Consensus 50 ~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~---~allIW~tt~ 101 (183)
T cd01842 50 RLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI---ECLIVWNTAM 101 (183)
T ss_pred ceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC---ccEEEEecCC
Confidence 4799999999999863 4456778888888888 5554444443
No 382
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=70.20 E-value=1.7 Score=34.83 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=34.2
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.|+++|... |++|.++||+.+|++...++++|..|..-+++
T Consensus 26 ~Vl~~L~~~-g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv 66 (178)
T PRK06266 26 EVLKALIKK-GEVTDEEIAEQTGIKLNTVRKILYKLYDARLA 66 (178)
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCe
Confidence 478888764 79999999999999999999988887655543
No 383
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=69.94 E-value=0.89 Score=34.24 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=36.9
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
-.+.|.+.|++. +|.|+.|+|+.+|=++..+.|-|+.+.-++++
T Consensus 65 ~nleLl~~Ia~~-~P~Si~ElAe~vgRdv~nvhr~Ls~l~~~GlI 108 (144)
T COG4190 65 RNLELLELIAQE-EPASINELAELVGRDVKNVHRTLSTLADLGLI 108 (144)
T ss_pred hHHHHHHHHHhc-CcccHHHHHHHhCcchHHHHHHHHHHHhcCeE
Confidence 345678888875 89999999999999999999988887766654
No 384
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=69.49 E-value=42 Score=31.31 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=61.2
Q ss_pred eEEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhcccCC----------------C-CeEEEeCCCCCCCCCccE
Q 041250 117 SLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLESDL----------------V-NLKYVGGDMFKAISPAYA 176 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~~----------------~-ri~~~~~d~~~~~~~~D~ 176 (259)
+|.=||.|...+..+.+-+ .++.+++++|. ++.++..++.. . ++.+. .|+.+....+|+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~i~~adv 81 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKHVAEADI 81 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHHHhcCCE
Confidence 5677888887777665443 44678999998 77776654311 0 11111 111112335888
Q ss_pred Eeehh-hhcc---------CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 177 VLLKW-ILLD---------WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 177 ~~~~~-vlh~---------~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
++++- +-.+ .+-.......+.+.+.+++ |.++|.+...|..-
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~----~~lVv~~STvp~Gt 133 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS----DKIVVEKSTVPVKT 133 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC----CcEEEEeCCCCCCh
Confidence 87752 2221 1223567788889999986 77888888777653
No 385
>PHA01634 hypothetical protein
Probab=69.31 E-value=18 Score=27.46 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=30.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES 155 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~ 155 (259)
...+|+|||++-|.-++.++-+ +. +++.++. |...+..++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHH
Confidence 4679999999999999999887 34 4777776 555555444
No 386
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=69.20 E-value=1.5 Score=26.71 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=20.0
Q ss_pred CHHHHHHHcCCCccccccceecc
Q 041250 23 TLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 23 t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
|+.|||+.+|++...+++.|..-
T Consensus 1 Ti~dIA~~agvS~~TVSr~ln~~ 23 (46)
T PF00356_consen 1 TIKDIAREAGVSKSTVSRVLNGP 23 (46)
T ss_dssp CHHHHHHHHTSSHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCC
Confidence 68899999999999999977653
No 387
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=68.54 E-value=67 Score=26.60 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCCeEEEecCCch----HHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC----CCCCccEEe
Q 041250 114 GLNSLVDVGGGTG----TAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK----AISPAYAVL 178 (259)
Q Consensus 114 ~~~~vlDvGgG~G----~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~----~~~~~D~~~ 178 (259)
+.+.+|++.++.| .++.+.+.++-+.+.+.+-- ++-....++ ..+-++|+.++-.+ .+.+.|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4568898865433 44555566666666544432 222222222 34667999888543 244688877
Q ss_pred ehhhhccCChHHHH-HHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 179 LKWILLDWNDEECV-KILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 179 ~~~vlh~~~d~~~~-~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
+- ...++.. ++|+-+. +.| .|.++++......
T Consensus 121 VD-----c~~~d~~~~vl~~~~--~~~---~GaVVV~~Na~~r 153 (218)
T PF07279_consen 121 VD-----CKREDFAARVLRAAK--LSP---RGAVVVCYNAFSR 153 (218)
T ss_pred Ee-----CCchhHHHHHHHHhc--cCC---CceEEEEeccccC
Confidence 64 4445555 7777544 555 6888888876554
No 388
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=68.05 E-value=1.4 Score=40.82 Aligned_cols=69 Identities=7% Similarity=0.115 Sum_probs=50.6
Q ss_pred HHHHcCcchhhhcCCCC-CCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhhh-hhhcCCC
Q 041250 5 CAFQLGIPDIINKHGKP-MTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNASK-LLLKDNP 74 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~~-~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~-~l~~~~~ 74 (259)
++.+..|+..|... ++ .+.++||+.+|++...+.+.+..|..-+++.. +.....|.+|..++ ++..+.|
T Consensus 2 ~~~e~~iL~~l~~~-~~~~~~~~la~~~g~~~~~v~~~~~~L~~kg~v~~~~~~~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 2 AMAEEALLGALSNN-EEISDSGQFAASHGLDHNEVVGVIKSLHGFRYVDAQDIKRETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred chHHHHHHHHHHhc-CCCCCHHHHHHHcCCCHHHHHHHHHHHHhCCCEEEEEEEEEEEEECHHHHHHHHcCCH
Confidence 35677888889864 44 89999999999999888876666555444322 34567899999998 6655555
No 389
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=68.04 E-value=47 Score=27.66 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCCeEEEecCCchHHHHH--HHHHCCCCeEEEe--ec-hHHHhhcccCCCCeEEEeCCCCC-CCCCccEEeeh
Q 041250 114 GLNSLVDVGGGTGTAAKA--IAKAFPKLECTCF--DL-PHVVNGLESDLVNLKYVGGDMFK-AISPAYAVLLK 180 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~--l~~~~p~~~~~~~--D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~~~~~ 180 (259)
+..+||=||||.-..-.. |++. +.+++++ ++ +++.+.++ .++++++..+|.. ...++++|+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~--~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKK--YGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHh--CCCEEEEeCCCChHHhCCCcEEEEC
Confidence 456899999998776543 3343 3455555 55 45444433 5689999988865 45568877776
No 390
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=67.77 E-value=8.1 Score=36.89 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=35.7
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCe-EEEeechHH
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDLPHV 149 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~~~~ 149 (259)
.+-..|. .+.....|||+||-.|.++.-.++..|-.+ ++++|+-++
T Consensus 34 Qln~ky~-fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 34 QLNKKYK-FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred HHHHHhc-cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 3445565 346677899999999999999999998554 899998433
No 391
>PHA02591 hypothetical protein; Provisional
Probab=67.26 E-value=2.2 Score=29.01 Aligned_cols=31 Identities=16% Similarity=0.406 Sum_probs=25.1
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCcccccccee
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFA 43 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~ 43 (259)
+...|.+ .+.|.++||+.+|++...++++++
T Consensus 51 vA~eL~e--qGlSqeqIA~~LGVsqetVrKYL~ 81 (83)
T PHA02591 51 VTHELAR--KGFTVEKIASLLGVSVRKVRRYLE 81 (83)
T ss_pred HHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHh
Confidence 3445665 689999999999999999887664
No 392
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=66.93 E-value=2.4 Score=32.95 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=33.1
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecccc
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKL 47 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~ 47 (259)
.+..|.+.|..+ +..|..+||+++|+++..+.+=++.|..
T Consensus 10 ~D~~Il~~Lq~d-~R~s~~eiA~~lglS~~tV~~Ri~rL~~ 49 (153)
T PRK11179 10 LDRGILEALMEN-ARTPYAELAKQFGVSPGTIHVRVEKMKQ 49 (153)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567889999985 8999999999999999998875555543
No 393
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=66.76 E-value=51 Score=29.29 Aligned_cols=103 Identities=7% Similarity=-0.021 Sum_probs=60.9
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCC-CccEEeeh
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAIS-PAYAVLLK 180 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~-~~D~~~~~ 180 (259)
+.++++.+ .-...+|+=+|.-...+...+. ....++...+........+....++.|- .++..+.+ .+|.+++.
T Consensus 9 ~~~~r~~~--~~~~~~~l~~~~~~d~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~d~~~~~ 83 (342)
T PRK09489 9 EVLLRHSD--DFEQRRVLFAGDLQDDLPAQLD--AASVRVHTQQFHHWQVLSRQMGDNARFS-LVATAEDVADCDTLIYY 83 (342)
T ss_pred HHHHhhHH--HhCCCcEEEEcCcchhhHHhhh--ccceEEehhhhHHHHHHHhhcCCceEec-cccCCccCCCCCEEEEE
Confidence 34445544 3234578888888888888775 2233444434333222222122334332 33333333 58988776
Q ss_pred hhhccCCh--HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 181 WILLDWND--EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 181 ~vlh~~~d--~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
||. +++.-.|..+.+.|+| ||.|+++-..
T Consensus 84 -----~pk~k~~~~~~l~~~~~~l~~---g~~i~~~G~~ 114 (342)
T PRK09489 84 -----WPKNKQEAQFQLMNLLSLLPV---GTDIFVVGEN 114 (342)
T ss_pred -----CCCCHHHHHHHHHHHHHhCCC---CCEEEEEEec
Confidence 664 5566789999999999 8999888763
No 394
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=66.45 E-value=79 Score=27.75 Aligned_cols=93 Identities=10% Similarity=0.028 Sum_probs=53.5
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEeec----hHHHhhcccC-CCCeEEEeCCCCC--CCCCccEEeehhhhcc
Q 041250 114 GLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL----PHVVNGLESD-LVNLKYVGGDMFK--AISPAYAVLLKWILLD 185 (259)
Q Consensus 114 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~----~~~~~~a~~~-~~ri~~~~~d~~~--~~~~~D~~~~~~vlh~ 185 (259)
...+|+=+|+| .|.++..+++.. +.++++++. ++-.+.+++. .+.+.....++.+ ...++|+++-.-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~---- 246 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT---- 246 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc----
Confidence 34567766665 377777788876 458888875 5555666542 2212111111110 112477766542
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
... ..+....+.+++ +|+++++....
T Consensus 247 -g~~---~~~~~~~~~l~~---~G~~v~~G~~~ 272 (355)
T cd08230 247 -GVP---PLAFEALPALAP---NGVVILFGVPG 272 (355)
T ss_pred -CCH---HHHHHHHHHccC---CcEEEEEecCC
Confidence 111 357778888999 89988876543
No 395
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=66.37 E-value=1.8 Score=40.44 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=50.3
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhhhhhh-cCCC
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNASKLLL-KDNP 74 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~~l~-~~~~ 74 (259)
..+..++..|... +++|..+||+.+++++..+.+.+..|..-+++.. +.....|.+|+.++.+. ...|
T Consensus 6 ~~e~~vL~~L~~~-~~~s~~eLA~~l~l~~~tVt~~i~~Le~kGlV~~~~~~~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 6 PNEKKVLKALKEL-KEATLEELAEKLGLPPEAVMRAAEWLEEKGLVKVEERVEEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEEEeeeEEEEEECHHHHHHHHhcCH
Confidence 4566778888764 6899999999999999999998887766655422 22345799999998444 4444
No 396
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=66.36 E-value=13 Score=31.79 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=41.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCC
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 169 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~ 169 (259)
+.....-+|+|...|.+...+.++ ++.++.+|--.+.+..- ..++|+....|-|+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~-dtg~v~h~r~DGfk 263 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLM-DTGQVTHLREDGFK 263 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhh-cccceeeeeccCcc
Confidence 556778999999999999999999 78999999754443332 44556666666665
No 397
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=66.35 E-value=8.9 Score=31.06 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=30.9
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE 154 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 154 (259)
.....|||-=||+|..+.+..+. +-+++++|+ +..++.|+
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 34679999999999999998887 457999999 77777765
No 398
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.96 E-value=2 Score=32.18 Aligned_cols=44 Identities=11% Similarity=0.236 Sum_probs=38.3
Q ss_pred HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250 5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS 49 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~ 49 (259)
..+...|.+.+.++ |..|..|++..+|++...+.+.|+.+..-+
T Consensus 11 ~eLk~rIvElVRe~-GRiTi~ql~~~TGasR~Tvk~~lreLVa~G 54 (127)
T PF06163_consen 11 EELKARIVELVREH-GRITIKQLVAKTGASRNTVKRYLRELVARG 54 (127)
T ss_pred HHHHHHHHHHHHHc-CCccHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 34667788999986 899999999999999999999999987654
No 399
>PRK08507 prephenate dehydrogenase; Validated
Probab=65.69 E-value=28 Score=29.67 Aligned_cols=79 Identities=13% Similarity=0.028 Sum_probs=45.9
Q ss_pred eEEEecCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHH
Q 041250 117 SLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVK 193 (259)
Q Consensus 117 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~ 193 (259)
+|.=||+|. |.++..+.+.....+++++|. ++..+.+.+.. -+.. ..+.. +...+|+|++. .++.....
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g-~~~~-~~~~~-~~~~aD~Vila-----vp~~~~~~ 73 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELG-LVDE-IVSFE-ELKKCDVIFLA-----IPVDAIIE 73 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCC-CCcc-cCCHH-HHhcCCEEEEe-----CcHHHHHH
Confidence 355577665 445555555543457888898 55555554311 1101 11211 12248988887 56677778
Q ss_pred HHHHHHHhccc
Q 041250 194 ILKKCKEAITR 204 (259)
Q Consensus 194 il~~~~~~L~p 204 (259)
+++++.. +++
T Consensus 74 ~~~~l~~-l~~ 83 (275)
T PRK08507 74 ILPKLLD-IKE 83 (275)
T ss_pred HHHHHhc-cCC
Confidence 8888888 877
No 400
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=65.52 E-value=0.95 Score=29.31 Aligned_cols=32 Identities=9% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 19 GKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 19 ~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
+++++..+||+.+|+++..+...+.-|..-++
T Consensus 20 ~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~Gl 51 (60)
T PF01325_consen 20 GGPVRTKDIAERLGVSPPTVTEMLKRLAEKGL 51 (60)
T ss_dssp TSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred CCCccHHHHHHHHCCChHHHHHHHHHHHHCCC
Confidence 48999999999999999999887777665544
No 401
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=64.08 E-value=3 Score=29.63 Aligned_cols=44 Identities=2% Similarity=-0.198 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecC
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLT 63 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t 63 (259)
.+.|..|||+.+|+++..+++.|..+...+++..+..-+.|+.+
T Consensus 46 ~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 68999999999999999999999888776655212233667665
No 402
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=63.93 E-value=3.2 Score=28.60 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=28.1
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceec
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQ 44 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~ 44 (259)
.|.++|.. +..|+.+||+.+|++...++|.|..
T Consensus 10 ~I~e~l~~--~~~ti~dvA~~~gvS~~TVsr~L~~ 42 (80)
T TIGR02844 10 EIGKYIVE--TKATVRETAKVFGVSKSTVHKDVTE 42 (80)
T ss_pred HHHHHHHH--CCCCHHHHHHHhCCCHHHHHHHhcC
Confidence 46677876 7899999999999999999996654
No 403
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=63.84 E-value=2 Score=39.92 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=50.4
Q ss_pred HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhhh-hhhcCCC
Q 041250 5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNASK-LLLKDNP 74 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~-~l~~~~~ 74 (259)
...+..|+..|.+.++..+..+||+.+|++...+.+.+..|..-+++.. +.....|.+|..++ ++..+.|
T Consensus 5 ~~~e~~iL~~l~~~~~~~~~~~la~~~~~~~~~v~~~~~~L~~kg~v~~~~~~~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 5 ELEENTILSKLESENEIVNSLALAESLNIDHQKVVGAIKSLESANYITTEMKKSNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHHHhCCCEEEEEEEEEEEEECHHHHHHHHcCCH
Confidence 3566778888886225799999999999998888776665555444322 34567899999998 6655555
No 404
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=63.82 E-value=32 Score=33.26 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=52.6
Q ss_pred CeEEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhcc
Q 041250 116 NSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILLD 185 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh~ 185 (259)
.+|+=+||| .++..+++. ..+.+++++|. ++.++.+++ .....+.||..++ ..++|+++...
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vvv~~---- 472 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLINAI---- 472 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe----
Confidence 467767765 344444332 23568999998 777887774 3567888998873 12478777652
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
-+++.+..+...+++ +.| .-+++.
T Consensus 473 ~d~~~n~~i~~~ar~-~~p---~~~iia 496 (621)
T PRK03562 473 DDPQTSLQLVELVKE-HFP---HLQIIA 496 (621)
T ss_pred CCHHHHHHHHHHHHH-hCC---CCeEEE
Confidence 234555556555544 456 456554
No 405
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=63.66 E-value=2.6 Score=34.90 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=39.2
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-CCC------ceeecCHhhhh
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-DEE------QGYVLTNASKL 68 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-~~~------~~y~~t~~~~~ 68 (259)
.|...|... +|+|+.|||+++|+++..+++=|..|..-+++..+ ... -.|++|..++.
T Consensus 15 ~il~lL~~~-g~~sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 15 RILELLKKS-GPVSADELAEELGISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHhcc-CCccHHHHHHHhCCCHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 355566654 89999999999999999999877666554433211 111 24777776553
No 406
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=63.17 E-value=1.5 Score=30.71 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=40.0
Q ss_pred cchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCC---CC--CCceeecCHhhhhhh
Q 041250 11 IPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNN---ND--EEQGYVLTNASKLLL 70 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~---~~--~~~~y~~t~~~~~l~ 70 (259)
|+..|.. |+....||.+.+ |+++..+.+=|+.+...+++.. .. ..-.|++|+.++.|.
T Consensus 10 IL~~l~~--g~~rf~el~~~l~~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ--GPMRFSELQRRLPGISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT--SSEEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHhcchhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 4556665 899999999999 9999999887777666554321 11 123699999987553
No 407
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=63.13 E-value=3.4 Score=30.02 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=42.9
Q ss_pred HcCcchhhh--c-CCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCCc---eeecCHhhhhh
Q 041250 8 QLGIPDIIN--K-HGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEEQ---GYVLTNASKLL 69 (259)
Q Consensus 8 ~l~lf~~L~--~-~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~---~y~~t~~~~~l 69 (259)
++.++..|. . .+++.|..+||+.+++++..+.++++.|.--+++.. ...+. .+.+|+.+..+
T Consensus 27 q~~vL~~l~~~~~~~~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~ 96 (109)
T TIGR01889 27 ELLILYYLGKLENNEGKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSK 96 (109)
T ss_pred HHHHHHHHHhhhccCCcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHH
Confidence 445566665 1 137899999999999999999999988776654432 12222 46788877643
No 408
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=63.08 E-value=8.7 Score=33.04 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=28.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHH
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVV 150 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~ 150 (259)
-...+|||+|||+|.-.+......- .++..+|. .+++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence 3468999999999999998877642 66777787 4444
No 409
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=62.47 E-value=16 Score=28.77 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=53.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeech--HHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHH
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP--HVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECV 192 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~--~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~ 192 (259)
..+|.=||.|+=..+.++.-+-.++++++-..+ .-.+.|++.. |...++.+-...+|+|++- .||+...
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G----f~v~~~~eAv~~aDvV~~L-----~PD~~q~ 74 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG----FEVMSVAEAVKKADVVMLL-----LPDEVQP 74 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-----ECCEHHHHHHC-SEEEE------S-HHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC----CeeccHHHHHhhCCEEEEe-----CChHHHH
Confidence 468899999988888887777778888777663 3556666311 1111221112258888775 7888888
Q ss_pred HHH-HHHHHhcccCCCCcEEEEEee
Q 041250 193 KIL-KKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 193 ~il-~~~~~~L~p~~~gg~lli~e~ 216 (259)
+++ +.+...|+| |-.|++..-
T Consensus 75 ~vy~~~I~p~l~~---G~~L~fahG 96 (165)
T PF07991_consen 75 EVYEEEIAPNLKP---GATLVFAHG 96 (165)
T ss_dssp HHHHHHHHHHS-T---T-EEEESSS
T ss_pred HHHHHHHHhhCCC---CCEEEeCCc
Confidence 888 888899999 555554443
No 410
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=62.29 E-value=1.5 Score=24.52 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=19.8
Q ss_pred CCCHHHHHHHcCCCccccccceeccc
Q 041250 21 PMTLNELVSALTINLSKTQCFFAQQK 46 (259)
Q Consensus 21 ~~t~~elA~~~~~~~~~l~~ll~~~~ 46 (259)
|+|-.|||..+|+.+..++|+|..+.
T Consensus 2 ~mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 2 PMTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp E--HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 57889999999999999999876653
No 411
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=62.05 E-value=2.9 Score=32.80 Aligned_cols=42 Identities=12% Similarity=-0.068 Sum_probs=34.5
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
..|+++|... +.+|-+|||+.+|++...++++|..|.-.+++
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv 58 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGIKLNEVRKALYALYDAGLA 58 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCc
Confidence 3477877753 79999999999999999999988887665554
No 412
>PF05059 Orbi_VP4: Orbivirus VP4 core protein; InterPro: IPR007753 Orbivirus are double stranded RNA retroviruses of which the Bluetongue virus (BTV) is a member. The core of BTV is a multienzyme complex composed of two major proteins (VP7 and VP3) and three minor proteins (VP1, VP4 and VP6) in addition to the viral genome. VP4 has been shown to perform all RNA capping activities and has both methyltransferase type 1 and type 2 activities associated with it [].; GO: 0019028 viral capsid; PDB: 2JHP_A 2JHA_A 2JH9_A 2JH8_A 2JHC_A.
Probab=61.84 E-value=11 Score=35.55 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=47.4
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCC-CccEEeeh
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAIS-PAYAVLLK 180 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~-~~D~~~~~ 180 (259)
+.++..+|...-....|.=||||.|..+..++++.|. .-.|++|+..|--.+.. ...+++.+
T Consensus 178 EKLVSMLDY~vysad~V~YVGsGDlRTL~~F~krdp~-----------------RF~rv~W~~~DPIa~~~~~~NV~v~~ 240 (644)
T PF05059_consen 178 EKLVSMLDYAVYSADEVHYVGSGDLRTLMQFAKRDPK-----------------RFNRVQWHCIDPIAPESSASNVIVYR 240 (644)
T ss_dssp -HHHHHHHHH-SS-SEEEEES-TTSHHHHHHHHHSHH-----------------HHHTSEEEEE-TT------TTEEEE-
T ss_pred hhHHHHHHhhhccccEEEEeccCCcHHHHHHHhhChh-----------------hhhceEEEEECCcCCCCCCCcEEEEE
Confidence 4455555533445568999999999999999999764 45588888888766433 35677776
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCC--cEEEEEeeeec
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKK--RKVIIKDMIKE 219 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~g--g~lli~e~~~~ 219 (259)
...+.-.| +. +-+++ | -+++|.|.-.+
T Consensus 241 ~~V~~~~d-----l~----~~~~~---~~vErlLiWDV~sD 269 (644)
T PF05059_consen 241 EKVTSPRD-----LR----KFKNL---GRVERLLIWDVSSD 269 (644)
T ss_dssp ---SSTHH-----HH----TTS-T---S---EEEEE-----
T ss_pred eeeCCHHH-----HH----Hhccc---ccccEEEEEEecCC
Confidence 66654322 22 22344 3 37899987655
No 413
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=61.75 E-value=3.4 Score=28.95 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=34.8
Q ss_pred HHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 24 LNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 24 ~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
+.+||+.+++++..+.+.+..+...+++. ...+..|.+|+.+..+
T Consensus 2 ~~ela~~l~is~stvs~~l~~L~~~glI~-r~~~~~~~lT~~g~~~ 46 (96)
T smart00529 2 TSEIAERLNVSPPTVTQMLKKLEKDGLVE-YEPYRGITLTEKGRRL 46 (96)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCEE-EcCCCceEechhHHHH
Confidence 57999999999999999998887766542 2233579999988754
No 414
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=61.16 E-value=4.5 Score=33.51 Aligned_cols=57 Identities=9% Similarity=-0.027 Sum_probs=42.0
Q ss_pred chhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCCceeecCHhhhhh
Q 041250 12 PDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNASKLL 69 (259)
Q Consensus 12 f~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~~~l 69 (259)
...+.+. ..+|..|||+.+++++..+.+.++.|...+++.. ..+...+++|+.++.+
T Consensus 13 lg~l~~~-~~IS~~eLA~~L~iS~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~l 71 (217)
T PRK14165 13 LGAVNNT-VKISSSEFANHTGTSSKTAARILKQLEDEGYITRTIVPRGQLITITEKGLDV 71 (217)
T ss_pred HhccCCC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHH
Confidence 3345442 5699999999999999999999988876655421 2345678999988744
No 415
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=61.05 E-value=4.4 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHcCCCccccccc
Q 041250 19 GKPMTLNELVSALTINLSKTQCF 41 (259)
Q Consensus 19 ~~~~t~~elA~~~~~~~~~l~~l 41 (259)
+|.++..|||+++|+++..++.+
T Consensus 20 ~g~i~lkdIA~~Lgvs~~tIr~W 42 (60)
T PF10668_consen 20 NGKIKLKDIAEKLGVSESTIRKW 42 (60)
T ss_pred CCCccHHHHHHHHCCCHHHHHHH
Confidence 48999999999999999888764
No 416
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=60.83 E-value=87 Score=26.64 Aligned_cols=104 Identities=9% Similarity=0.060 Sum_probs=69.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-----hHHHhhcccCCCCeEEEeCCCCCCCC------CccEEee
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-----PHVVNGLESDLVNLKYVGGDMFKAIS------PAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-----~~~~~~a~~~~~ri~~~~~d~~~~~~------~~D~~~~ 179 (259)
++...+||-+|.++|.....+..- -|+--+..++. .+.+..|+ ...+|--+.-|...|.. -.|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk-kRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK-KRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh-ccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 567789999999999998888774 46555666654 35566666 55677777778877654 1455443
Q ss_pred hhhhccCC-hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCC
Q 041250 180 KWILLDWN-DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKD 224 (259)
Q Consensus 180 ~~vlh~~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~ 224 (259)
|.+ +++++.+.-|+.--|++ ||.++|.=-...-+++.
T Consensus 233 -----Dvaqpdq~RivaLNA~~FLk~---gGhfvisikancidstv 270 (317)
T KOG1596|consen 233 -----DVAQPDQARIVALNAQYFLKN---GGHFVISIKANCIDSTV 270 (317)
T ss_pred -----cCCCchhhhhhhhhhhhhhcc---CCeEEEEEecccccccc
Confidence 343 34455566678888999 88887765544444443
No 417
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=60.78 E-value=1.7 Score=36.95 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=38.6
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCC
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGN 52 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~ 52 (259)
|..+.+.|.+.||.++-+||.+++|.+...++|.|+-|.-.|++.
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lglsktTvsR~L~~LEk~GlIe 241 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGLSKTTVSRILRRLEKRGLIE 241 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCCChHHHHHHHHHHHhCCceE
Confidence 456778888888889999999999999999999999887776653
No 418
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=60.64 E-value=65 Score=29.26 Aligned_cols=65 Identities=14% Similarity=0.027 Sum_probs=44.5
Q ss_pred CeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCCC------CCCccEEeeh
Q 041250 116 NSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFKA------ISPAYAVLLK 180 (259)
Q Consensus 116 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~~------~~~~D~~~~~ 180 (259)
.+||=||||. |......+.++.+.++++.|. ++-+..+.. ...+++...-|..+. +.++|+++..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 3678888843 444444445566678999999 577776654 456999999999873 2257877655
No 419
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=60.25 E-value=79 Score=24.55 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=38.5
Q ss_pred CCCeEEEecCCchHHH--HHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCC-CCCCccEEeeh
Q 041250 114 GLNSLVDVGGGTGTAA--KAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AISPAYAVLLK 180 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~--~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~~~~~ 180 (259)
...+||=||||.=..- ..|.+. +.++++++ |+..+...+ .+.+++....+.+ ...++|+++..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~-l~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKE-LPYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHh-ccCcEEEecccChhcCCCceEEEEC
Confidence 4578999999865443 234444 55677775 444333332 3467777666665 45578888775
No 420
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=60.18 E-value=46 Score=24.23 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHCCCCeEEEe-echH-HHhhcccCCCCeE-EEeCCCCC-CC--CCccEEeehhhhccCChHHHHHHHHH
Q 041250 124 GTGTAAKAIAKAFPKLECTCF-DLPH-VVNGLESDLVNLK-YVGGDMFK-AI--SPAYAVLLKWILLDWNDEECVKILKK 197 (259)
Q Consensus 124 G~G~~~~~l~~~~p~~~~~~~-D~~~-~~~~a~~~~~ri~-~~~~d~~~-~~--~~~D~~~~~~vlh~~~d~~~~~il~~ 197 (259)
-.|..........|+.+++.+ +.+. .-+.++....++. ....++.. .+ .++|++++. .+++...+++..
T Consensus 10 ~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~-----~~~~~~~~~~~~ 84 (122)
T smart00859 10 YVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLA-----LPHGVSKEIAPL 84 (122)
T ss_pred hHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEc-----CCcHHHHHHHHH
Confidence 356666677777788887666 4431 1111111222222 11122221 22 368988776 555556666655
Q ss_pred HHHhccc
Q 041250 198 CKEAITR 204 (259)
Q Consensus 198 ~~~~L~p 204 (259)
+...+++
T Consensus 85 ~~~~~~~ 91 (122)
T smart00859 85 LPKAAEA 91 (122)
T ss_pred HHhhhcC
Confidence 5556676
No 421
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=59.31 E-value=50 Score=26.96 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCeEEEecCCchHHHH-HHHHHCCCCeEEEeec---hHHHhhcccCCCCeEEEeCCCCC-CCCCccEEeeh
Q 041250 115 LNSLVDVGGGTGTAAK-AIAKAFPKLECTCFDL---PHVVNGLESDLVNLKYVGGDMFK-AISPAYAVLLK 180 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~-~l~~~~p~~~~~~~D~---~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~~~~~ 180 (259)
..+||=||||.=.... ..+..+ +.++++++- ++..+.++ ..+++++.+++.. .+.++|+++.+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~~~~~l~~l~~--~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA-GAQLRVIAEELESELTLLAE--QGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCCCCHHHHHHHH--cCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 4689999999754442 233332 467788764 23333332 3489999999875 45578888776
No 422
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=59.21 E-value=66 Score=28.09 Aligned_cols=98 Identities=22% Similarity=0.223 Sum_probs=54.8
Q ss_pred EEEecCCc-hHHHHHHHHHCCCC-eEEEeechH------HHhhccc---C-CCCeEEEeCCCCCCCCCccEEeehhhhcc
Q 041250 118 LVDVGGGT-GTAAKAIAKAFPKL-ECTCFDLPH------VVNGLES---D-LVNLKYVGGDMFKAISPAYAVLLKWILLD 185 (259)
Q Consensus 118 vlDvGgG~-G~~~~~l~~~~p~~-~~~~~D~~~------~~~~a~~---~-~~ri~~~~~d~~~~~~~~D~~~~~~vlh~ 185 (259)
|.=||+|. |......+-..+-. +.+.+|+.+ +.+.... . ..++++..+|+ +...++|++++..-.-.
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y-~~~~~aDivvitaG~~~ 80 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY-DDCADADIIVITAGPSI 80 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH-HHhCCCCEEEECCCCCC
Confidence 45577766 44443333333333 589999722 1111111 1 13566666663 45667999888754322
Q ss_pred ---CCh------HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 186 ---WND------EECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 186 ---~~d------~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+. ....+|++++...++...|.|.++++-.
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 221 3457888888887765444687766653
No 423
>PTZ00357 methyltransferase; Provisional
Probab=58.86 E-value=26 Score=34.25 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=55.0
Q ss_pred CeEEEecCCchHHHHHHHHHCC----CCeEEEeec-hHHHhh--cc--c-----C-----CCCeEEEeCCCCC-CCC---
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFP----KLECTCFDL-PHVVNG--LE--S-----D-----LVNLKYVGGDMFK-AIS--- 172 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~--a~--~-----~-----~~ri~~~~~d~~~-~~~--- 172 (259)
..|+-+|+|.|-+.....++.. .++++.++- |+.+.. .+ + . .++|+++..|+.+ ..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4689999999999988877543 345677775 442211 11 1 1 4679999999998 322
Q ss_pred ----------CccEEeehhhhccCChH-HHHHHHHHHHHhcc
Q 041250 173 ----------PAYAVLLKWILLDWNDE-ECVKILKKCKEAIT 203 (259)
Q Consensus 173 ----------~~D~~~~~~vlh~~~d~-~~~~il~~~~~~L~ 203 (259)
++|+++ +-.|-.|.|. -.-+-|..+.+.|+
T Consensus 782 ~s~~~P~~~gKaDIVV-SELLGSFGDNELSPECLDGaQrfLK 822 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIV-SELLGSLGDNELSPECLEAFHAQLE 822 (1072)
T ss_pred ccccccccccccceeh-HhhhcccccccCCHHHHHHHHHhhh
Confidence 478655 5556556553 33455666666665
No 424
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=58.12 E-value=1.1e+02 Score=26.26 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=50.1
Q ss_pred CCeEEEec-CCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCC-CCccEEeehhhhccCChHHH
Q 041250 115 LNSLVDVG-GGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAI-SPAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 115 ~~~vlDvG-gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~-~~~D~~~~~~vlh~~~d~~~ 191 (259)
..+++=+| ||.|.++..+++...--.++++|. +.-++.+... .. .|..+.. .++|+++-. -..
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~--i~~~~~~~~g~Dvvid~-----~G~--- 210 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV--LDPEKDPRRDYRAIYDA-----SGD--- 210 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc--cChhhccCCCCCEEEEC-----CCC---
Confidence 34566667 556888888888875334666776 5555555421 11 1211112 247877644 121
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEee
Q 041250 192 VKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 192 ~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
...+..+.+.+++ +|+++++-.
T Consensus 211 ~~~~~~~~~~l~~---~G~iv~~G~ 232 (308)
T TIGR01202 211 PSLIDTLVRRLAK---GGEIVLAGF 232 (308)
T ss_pred HHHHHHHHHhhhc---CcEEEEEee
Confidence 1356777888999 999988765
No 425
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=57.76 E-value=1.4 Score=28.27 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=30.2
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccc
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK 46 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~ 46 (259)
-++.|++.|-+ .+..|+.|||+.+|++++.+..-+..+.
T Consensus 6 rq~~Ll~~L~~-~~~~~~~ela~~l~~S~rti~~~i~~L~ 44 (59)
T PF08280_consen 6 RQLKLLELLLK-NKWITLKELAKKLNISERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHH-HTSBBHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCcHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35567777876 3789999999999999999988666554
No 426
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=57.40 E-value=90 Score=28.49 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=53.5
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------------------CCCeEEEeCCCCCCCCCccE
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------------------LVNLKYVGGDMFKAISPAYA 176 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~ri~~~~~d~~~~~~~~D~ 176 (259)
.+|.=||.|.-....+.+-+.-+.+++++|. ++.++..+.. ..+..+. ++...+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-----~~~~~aDv 78 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-----TTPEPADA 78 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-----cccccCCE
Confidence 4577788886555555433333568999998 6666653321 0111111 11225788
Q ss_pred Eeehhhh-cc---CCh-HHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 177 VLLKWIL-LD---WND-EECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 177 ~~~~~vl-h~---~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
|+++--- .+ -+| ......++.+.+.+++ |.++|.+...+.
T Consensus 79 vii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~----g~iVI~~STv~p 123 (415)
T PRK11064 79 FLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK----GDLVILESTSPV 123 (415)
T ss_pred EEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC----CCEEEEeCCCCC
Confidence 8766321 00 011 4556678888888987 667776665554
No 427
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=57.09 E-value=6.4 Score=33.32 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhhhhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNASKLL 69 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~~l 69 (259)
|++|+.|||+.+|++..++..+|+.|..-|++.. ..++..|+.-+....+
T Consensus 29 g~~tA~eis~~sgvP~~kvY~vl~sLe~kG~v~~~~g~P~~y~av~p~~~i 79 (247)
T COG1378 29 GEATAKEISEASGVPRPKVYDVLRSLEKKGLVEVIEGRPKKYRAVPPEELI 79 (247)
T ss_pred CCccHHHHHHHcCCCchhHHHHHHHHHHCCCEEeeCCCCceEEeCCHHHHH
Confidence 8999999999999999999999998876655422 3566778776665533
No 428
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=57.09 E-value=86 Score=27.58 Aligned_cols=99 Identities=19% Similarity=0.142 Sum_probs=53.8
Q ss_pred CCeEEEecC-Cc-hHHHHHHHHHCCCC-------eEEEeechHHHhhccc-----------CCCCeEEEeCCCCCCCCCc
Q 041250 115 LNSLVDVGG-GT-GTAAKAIAKAFPKL-------ECTCFDLPHVVNGLES-----------DLVNLKYVGGDMFKAISPA 174 (259)
Q Consensus 115 ~~~vlDvGg-G~-G~~~~~l~~~~p~~-------~~~~~D~~~~~~~a~~-----------~~~ri~~~~~d~~~~~~~~ 174 (259)
+.+|.=||+ |. |.. .++.-...++ +.+.+|+.+..+.++. ...++++. .+..+...++
T Consensus 2 p~KV~IiGa~G~VG~~-~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~da 79 (322)
T cd01338 2 PVRVAVTGAAGQIGYS-LLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-DDPNVAFKDA 79 (322)
T ss_pred CeEEEEECCCcHHHHH-HHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-cCcHHHhCCC
Confidence 457777887 55 433 2222222222 6888998554432221 11244544 3333456679
Q ss_pred cEEeehhhhccCCh-------HHHHHHHHHHHHhcccCC-CCcEEEEEe
Q 041250 175 YAVLLKWILLDWND-------EECVKILKKCKEAITRDG-KKRKVIIKD 215 (259)
Q Consensus 175 D~~~~~~vlh~~~d-------~~~~~il~~~~~~L~p~~-~gg~lli~e 215 (259)
|++++..-.-.-+. +...+|++++...++... |.+.++++-
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 99888754322222 234677788777775433 267777765
No 429
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=56.95 E-value=1.1e+02 Score=25.12 Aligned_cols=104 Identities=10% Similarity=0.076 Sum_probs=65.9
Q ss_pred CCCCeEEEecCCchHHHHHHHH----HCCCCeEEEeech--HHHhhcccCCCCeEEEeCCCCCCC---C------Cc-cE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAK----AFPKLECTCFDLP--HVVNGLESDLVNLKYVGGDMFKAI---S------PA-YA 176 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~----~~p~~~~~~~D~~--~~~~~a~~~~~ri~~~~~d~~~~~---~------~~-D~ 176 (259)
.++..|+++|.-.|.-++-++. .....+++++|+. +.-..|. ..++|.|+.++-.+|- + .+ -+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-e~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-EVPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-cCCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 3468899999877776665544 2344688888872 2222333 4779999999988741 1 12 23
Q ss_pred EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
.++-..-| +-+.+..-|+-..+.|.- |.++++-|...++-.
T Consensus 147 fvilDsdH--s~~hvLAel~~~~pllsa---G~Y~vVeDs~v~dlp 187 (237)
T COG3510 147 FVILDSDH--SMEHVLAELKLLAPLLSA---GDYLVVEDSNVNDLP 187 (237)
T ss_pred EEEecCCc--hHHHHHHHHHHhhhHhhc---CceEEEecccccCCC
Confidence 33333333 334455667767777887 888888888877654
No 430
>PTZ00117 malate dehydrogenase; Provisional
Probab=56.67 E-value=1.2e+02 Score=26.63 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCeEEEecCCc-hHHHHHHHHHCCCCeEEEeechHHHhhccc---------CCCCeEEEe-CCCCCCCCCccEEeehh
Q 041250 115 LNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDLPHVVNGLES---------DLVNLKYVG-GDMFKAISPAYAVLLKW 181 (259)
Q Consensus 115 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~ri~~~~-~d~~~~~~~~D~~~~~~ 181 (259)
..+|.=||+|+ |.....++....-..++++|+.+-...+.. ...+.++.. .|+. ...++|+|++.-
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45789999988 666555555543247889998321111211 122334433 3432 456799988875
No 431
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=56.56 E-value=2.3 Score=27.29 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=21.9
Q ss_pred chhhhcCCCCCCHHHHHHHcCCCccccccceec
Q 041250 12 PDIINKHGKPMTLNELVSALTINLSKTQCFFAQ 44 (259)
Q Consensus 12 f~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~ 44 (259)
-+.+.+ ...|..+||+.+|+++..+.+++..
T Consensus 3 ~~~m~~--~~it~~~La~~~gis~~tl~~~~~~ 33 (63)
T PF13443_consen 3 KELMAE--RGITQKDLARKTGISRSTLSRILNG 33 (63)
T ss_dssp HHHHHH--TT--HHHHHHHHT--HHHHHHHHTT
T ss_pred HHHHHH--cCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 345666 5789999999999999999998764
No 432
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=56.14 E-value=3.7 Score=25.64 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=26.2
Q ss_pred CCC-CHHHHHHHcCCCccccccceeccccccCC
Q 041250 20 KPM-TLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 20 ~~~-t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
... |..+||+.+|+++..+.+.+..+...+++
T Consensus 18 ~~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i 50 (60)
T smart00345 18 DKLPSERELAAQLGVSRTTVREALSRLEAEGLV 50 (60)
T ss_pred CcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 445 89999999999999999988877665543
No 433
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=55.90 E-value=65 Score=30.59 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=51.2
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC--C-----CCccEEeehhhhccC
Q 041250 117 SLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA--I-----SPAYAVLLKWILLDW 186 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~-----~~~D~~~~~~vlh~~ 186 (259)
+++=+ |.|.++..+++.. .+..++++|. ++.++.+++ ..+..+.||..++ + .++|.++..- -
T Consensus 419 hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~----~ 490 (558)
T PRK10669 419 HALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--RGIRAVLGNAANEEIMQLAHLDCARWLLLTI----P 490 (558)
T ss_pred CEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--CCCeEEEcCCCCHHHHHhcCccccCEEEEEc----C
Confidence 44444 4556666666643 3467999998 777777773 4688999999884 1 1477555431 1
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
+|+++..+...+ +...| ..+++.
T Consensus 491 ~~~~~~~iv~~~-~~~~~---~~~iia 513 (558)
T PRK10669 491 NGYEAGEIVASA-REKRP---DIEIIA 513 (558)
T ss_pred ChHHHHHHHHHH-HHHCC---CCeEEE
Confidence 234444455544 44466 566554
No 434
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.64 E-value=3.6 Score=30.00 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=33.5
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHc-----CCCccccccceeccccccCC
Q 041250 8 QLGIPDIINKHGKPMTLNELVSAL-----TINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~-----~~~~~~l~~ll~~~~~~~~~ 51 (259)
+.-|++.|...+++.|+.||.+.+ +++...+.|.|+.+...+++
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 445778887655789999999998 57788888877777665543
No 435
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=55.19 E-value=1.2e+02 Score=26.37 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=54.7
Q ss_pred cCCCCeEEEec-CCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCCC-CCCccEEeehhhhccCC
Q 041250 112 FEGLNSLVDVG-GGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFKA-ISPAYAVLLKWILLDWN 187 (259)
Q Consensus 112 ~~~~~~vlDvG-gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~~-~~~~D~~~~~~vlh~~~ 187 (259)
.....+||=.| ||.|.++..+++.. +.++++.+. ++-.+.+++. .+.+- |..++ ...+|+++.... .
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~vi----~~~~~~~~~~d~~i~~~~----~ 233 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASAG----GAYDTPPEPLDAAILFAP----A 233 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCceec----cccccCcccceEEEECCC----c
Confidence 45567787777 45677777788876 567888876 6667777762 22221 11111 124676543321 1
Q ss_pred hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 188 DEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 188 d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
. ..+....+.+++ +|+++++-.
T Consensus 234 ~----~~~~~~~~~l~~---~G~~v~~G~ 255 (329)
T TIGR02822 234 G----GLVPPALEALDR---GGVLAVAGI 255 (329)
T ss_pred H----HHHHHHHHhhCC---CcEEEEEec
Confidence 1 357778889999 999988765
No 436
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=54.82 E-value=1.1e+02 Score=26.23 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=53.7
Q ss_pred cCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeec-hHHHhhcccCC-CCeEEEeCCCC----C--CCCCccEEeehhh
Q 041250 112 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDL-VNLKYVGGDMF----K--AISPAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~ri~~~~~d~~----~--~~~~~D~~~~~~v 182 (259)
+....+||..|+| .|..+.+++++. +.++++.+. ++..+.+++.. +.+-....+.. . +...+|+++-..
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~- 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV- 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC-
Confidence 4455677778866 488888888876 467778776 55555554311 11111111111 0 112478766431
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.. ...++.+.+.|++ +|+++.+..
T Consensus 241 ----g~---~~~~~~~~~~l~~---~G~~v~~g~ 264 (338)
T cd08254 241 ----GT---QPTFEDAQKAVKP---GGRIVVVGL 264 (338)
T ss_pred ----CC---HHHHHHHHHHhhc---CCEEEEECC
Confidence 11 1367788899999 899887743
No 437
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=54.72 E-value=27 Score=31.42 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=67.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCC-C--CCC-ccEEee--
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK-A--ISP-AYAVLL-- 179 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~-~--~~~-~D~~~~-- 179 (259)
+..+.+|++|+.+.....+++.|+-++.-+++. .+.+..+.. ..-...+..+|++. + ... ++++..
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 357899999999999999999999888777777 555554443 22334555555553 1 110 111111
Q ss_pred -----------------------hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCC
Q 041250 180 -----------------------KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKD 224 (259)
Q Consensus 180 -----------------------~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~ 224 (259)
+.+.-+|++. ..++......++| +|++++.+.+...+...
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~--~~~f~~~~~~~~~---~~~v~~~e~~~~~p~gs 322 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLTRDTITHWQDK--SALFRGRVATLKP---GGKVLILEYIRGLPEGS 322 (364)
T ss_pred chhhhhcccccCCCccccccccchhheeecccc--cHHHHhHhhccCc---CceEEehhhcCcCCcCc
Confidence 1122233332 2467778888999 89999999987765543
No 438
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=54.39 E-value=4 Score=28.92 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.++.|..+|..- +|-.+.-||..++++...+...++.+..+|++
T Consensus 8 l~~~IL~hl~~~-~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLl 51 (92)
T PF10007_consen 8 LDLKILQHLKKA-GPDYAKSIARRLKIPLEEVREALEKLEEMGLL 51 (92)
T ss_pred hHHHHHHHHHHH-CCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCe
Confidence 345677778774 79999999999999999999988887776654
No 439
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=54.32 E-value=5.7 Score=27.84 Aligned_cols=38 Identities=5% Similarity=0.107 Sum_probs=31.0
Q ss_pred HHHHcCcch-hhhcCCCCCCHHHHHHHcCCCccccccceecc
Q 041250 5 CAFQLGIPD-IINKHGKPMTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 5 ~a~~l~lf~-~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
.+-++.|+. .|. +..|..|||+.+|++...+.|.=+++
T Consensus 35 l~~R~~va~~lL~---~g~syreIa~~tgvS~aTItRvsr~L 73 (87)
T PF01371_consen 35 LAQRWQVAKELLD---EGKSYREIAEETGVSIATITRVSRCL 73 (87)
T ss_dssp HHHHHHHHHHHHH---TTSSHHHHHHHHTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 456788888 776 58999999999999998888855554
No 440
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=54.04 E-value=3.6 Score=31.60 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=34.5
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS 49 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~ 49 (259)
..+..|.+.|..+ ++.|..+||+++|+++..+.+-++-|.-.|
T Consensus 8 ~~D~~IL~~L~~d-~r~~~~eia~~lglS~~~v~~Ri~~L~~~G 50 (154)
T COG1522 8 DIDRRILRLLQED-ARISNAELAERVGLSPSTVLRRIKRLEEEG 50 (154)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3567788899985 789999999999999999887666554433
No 441
>PRK10870 transcriptional repressor MprA; Provisional
Probab=53.95 E-value=7.7 Score=30.90 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=44.0
Q ss_pred cCcchhhhcC-CCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCC---ceeecCHhhhhhhc
Q 041250 9 LGIPDIINKH-GKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEE---QGYVLTNASKLLLK 71 (259)
Q Consensus 9 l~lf~~L~~~-~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~---~~y~~t~~~~~l~~ 71 (259)
+.++-.|... ++++|..|||+.+++++..+.+++..+..-+++... .++ -...+|+.++.+..
T Consensus 58 ~~iL~~L~~~~~~~it~~eLa~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 58 FMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3445555432 267999999999999999999999887766654321 122 35789999886543
No 442
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=53.90 E-value=3.4 Score=28.02 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHcCCCccccccceecccccc
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVS 49 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~ 49 (259)
...|+.|||+.+++++..+.|+.+.++.-+
T Consensus 33 ~~~si~elA~~~~vS~sti~Rf~kkLG~~g 62 (77)
T PF01418_consen 33 AFMSISELAEKAGVSPSTIVRFCKKLGFSG 62 (77)
T ss_dssp CT--HHHHHHHCTS-HHHHHHHHHHCTTTC
T ss_pred HHccHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 468999999999999999999988887643
No 443
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=53.81 E-value=23 Score=32.11 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=55.0
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC----CCCCccEEeehhhhccCChH
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK----AISPAYAVLLKWILLDWNDE 189 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~----~~~~~D~~~~~~vlh~~~d~ 189 (259)
..|+=||+|...+..++.....+.+++++|- +..-....- ...|+.|......+ ..| ..--++...|..++++
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p-~~~~fl~sal~~ft~~ 82 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNP-GNGHFLKSALARFTPE 82 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCC-CcchHHHHHHHhCCHH
Confidence 3578899999888888877777889999997 544443332 56788876655543 233 1223355666666666
Q ss_pred HHHHHHHHHHHhcc
Q 041250 190 ECVKILKKCKEAIT 203 (259)
Q Consensus 190 ~~~~il~~~~~~L~ 203 (259)
+.+..+...--.++
T Consensus 83 d~i~~~e~~Gi~~~ 96 (408)
T COG2081 83 DFIDWVEGLGIALK 96 (408)
T ss_pred HHHHHHHhcCCeeE
Confidence 65555554443443
No 444
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=53.78 E-value=45 Score=28.84 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=45.3
Q ss_pred EEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC---CCCCccEEeehhhhccCChHHH
Q 041250 118 LVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AISPAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 118 vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~~~D~~~~~~vlh~~~d~~~ 191 (259)
|-=||+|. .+..+++. ..+.++++.|. ++.++...+.. +... .+..+ .....|++++. .++...
T Consensus 3 Ig~IGlG~--mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g--~~~~-~s~~~~~~~~~~~dvIi~~-----vp~~~~ 72 (298)
T TIGR00872 3 LGLIGLGR--MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR--TTGV-ANLRELSQRLSAPRVVWVM-----VPHGIV 72 (298)
T ss_pred EEEEcchH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC--Cccc-CCHHHHHhhcCCCCEEEEE-----cCchHH
Confidence 44567654 33333332 23567888998 55555444211 1110 11111 12346888776 555567
Q ss_pred HHHHHHHHHhcccCCCCcEEEEE
Q 041250 192 VKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 192 ~~il~~~~~~L~p~~~gg~lli~ 214 (259)
..+++.+...+++ |.++|.
T Consensus 73 ~~v~~~l~~~l~~----g~ivid 91 (298)
T TIGR00872 73 DAVLEELAPTLEK----GDIVID 91 (298)
T ss_pred HHHHHHHHhhCCC----CCEEEE
Confidence 7788899888887 555443
No 445
>PF13518 HTH_28: Helix-turn-helix domain
Probab=53.56 E-value=4.1 Score=24.82 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=21.6
Q ss_pred CCHHHHHHHcCCCccccccceeccc
Q 041250 22 MTLNELVSALTINLSKTQCFFAQQK 46 (259)
Q Consensus 22 ~t~~elA~~~~~~~~~l~~ll~~~~ 46 (259)
.|+.++|+..|+++..+.+|+....
T Consensus 13 ~s~~~~a~~~gis~~tv~~w~~~y~ 37 (52)
T PF13518_consen 13 ESVREIAREFGISRSTVYRWIKRYR 37 (52)
T ss_pred CCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 3999999999999999999886543
No 446
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=53.53 E-value=4.3 Score=33.39 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=31.9
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
|.+.|...+.+.|++|+|+++|++....+|.|..+...+.+
T Consensus 163 i~~~~~~~~~~~Taeela~~~giSRvTaRRYLeyl~~~~~l 203 (224)
T COG4565 163 VREALKEPDQELTAEELAQALGISRVTARRYLEYLVSNGIL 203 (224)
T ss_pred HHHHHhCcCCccCHHHHHHHhCccHHHHHHHHHHHHhcCee
Confidence 34455533479999999999999999999999888765543
No 447
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=53.46 E-value=1.2e+02 Score=26.60 Aligned_cols=101 Identities=18% Similarity=0.113 Sum_probs=56.2
Q ss_pred CCCeEEEecCCc-hHHHHHHHHHCCCC-eEEEeech-HHH-hhccc------CCCCeEEEeCCCCCCCCCccEEeehhhh
Q 041250 114 GLNSLVDVGGGT-GTAAKAIAKAFPKL-ECTCFDLP-HVV-NGLES------DLVNLKYVGGDMFKAISPAYAVLLKWIL 183 (259)
Q Consensus 114 ~~~~vlDvGgG~-G~~~~~l~~~~p~~-~~~~~D~~-~~~-~~a~~------~~~ri~~~~~d~~~~~~~~D~~~~~~vl 183 (259)
.+.+|.=||+|. |......+...+-. +..++|+. +.. ..+.. ...++....+|+ +...++|++++..-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 346899999977 55444444444444 68999972 211 22221 123556655443 346679998886533
Q ss_pred ccCC---h----HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 184 LDWN---D----EECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 184 h~~~---d----~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
-.-+ . .....+++++...++...|.++++++-
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2221 1 224567777666554222368877665
No 448
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=53.24 E-value=7.2 Score=25.70 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=37.3
Q ss_pred cchhhhcCCCCCCHHHHHHHcCC-----CccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250 11 IPDIINKHGKPMTLNELVSALTI-----NLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK 67 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~-----~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~ 67 (259)
|+++|.+.++|++..+|++.++. ++..+++-|+++.--++.. ....+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~-~~g~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTR-KVGRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCcc-ccCCcccccCHHHH
Confidence 56778777799999999999854 3466777888876554321 22233456777654
No 449
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.12 E-value=81 Score=26.98 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=48.8
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-----------------------CCCeEEEeCCCCCCC
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-----------------------LVNLKYVGGDMFKAI 171 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------------~~ri~~~~~d~~~~~ 171 (259)
.+|.=||+|.=..+++..-...+.+++++|. ++.++.+++. ..++++. .|+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHHh
Confidence 4677788886555554443444668999998 5555544320 1234322 2322223
Q ss_pred CCccEEeehhhhccCChHHHHHHHHHHHHhccc
Q 041250 172 SPAYAVLLKWILLDWNDEECVKILKKCKEAITR 204 (259)
Q Consensus 172 ~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p 204 (259)
.++|+|+..-. -+.+....+++++...+++
T Consensus 83 ~~aDlVieavp---e~~~~k~~~~~~l~~~~~~ 112 (287)
T PRK08293 83 KDADLVIEAVP---EDPEIKGDFYEELAKVAPE 112 (287)
T ss_pred cCCCEEEEecc---CCHHHHHHHHHHHHhhCCC
Confidence 46888887632 1122346788888888876
No 450
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=52.83 E-value=4.6 Score=24.76 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=27.2
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceec
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQ 44 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~ 44 (259)
++.-|...+.+ ..|..++|+.+|++...+.++++.
T Consensus 16 ~~~~i~~~~~~---~~s~~~vA~~~~vs~~TV~ri~~~ 50 (52)
T PF13542_consen 16 LEQYILKLLRE---SRSFKDVARELGVSWSTVRRIFDR 50 (52)
T ss_pred HHHHHHHHHhh---cCCHHHHHHHHCCCHHHHHHHHHh
Confidence 44456666764 379999999999999999887753
No 451
>PRK12683 transcriptional regulator CysB-like protein; Reviewed
Probab=52.71 E-value=54 Score=28.24 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=69.6
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecccc-ccCCCCCCCCcee-ecCHhhhhhhcCCCCCchhhcCchH
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKL-VSSGNNNDEEQGY-VLTNASKLLLKDNPLSEYAGDESKL 85 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~-~~~~~~~~~~~~y-~~t~~~~~l~~~~~~~~~l~~~~~~ 85 (259)
.+..|..+.+ ...|+..-|+++++++..+++-++.+.. ++..-.+..+.+. .+|+.++.|..
T Consensus 5 ~L~~F~~v~~--~~~S~s~AA~~L~isQpavS~~I~~LE~~lg~~Lf~R~~r~~~~lT~~G~~l~~-------------- 68 (309)
T PRK12683 5 QLRIIREAVR--QNFNLTEVANALYTSQSGVSKQIKDLEDELGVEIFIRRGKRLTGLTEPGKELLQ-------------- 68 (309)
T ss_pred HHHHHHHHHH--ccCCHHHHHHHhcCCcHHHHHHHHHHHHHhCCeeEeeCCCCcCCcCHHHHHHHH--------------
Confidence 4667777775 3459999999999999999997766542 2211014455665 79999986631
Q ss_pred HHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchH-------HHHHHHHHCCCCeEEEeec--hHHHhhc
Q 041250 86 NNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT-------AAKAIAKAFPKLECTCFDL--PHVVNGL 153 (259)
Q Consensus 86 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~-------~~~~l~~~~p~~~~~~~D~--~~~~~~a 153 (259)
.-.+.+...... ...+..+. .....-|-||+..+. +...+.+++|++++.+.+. .++++..
T Consensus 69 --~a~~il~~~~~~--~~~~~~~~---~~~~g~l~Ig~~~~~~~~~l~~~i~~f~~~~P~i~l~~~~~~~~~~~~~L 138 (309)
T PRK12683 69 --IVERMLLDAENL--RRLAEQFA---DRDSGHLTVATTHTQARYALPKVVRQFKEVFPKVHLALRQGSPQEIAEML 138 (309)
T ss_pred --HHHHHHHHHHHH--HHHHHHhc---CCCCceEEEEeccchHHHHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHH
Confidence 111111111100 11111222 122345778886652 3344566789998877664 3444443
No 452
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=52.62 E-value=1e+02 Score=28.86 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=61.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC----CCeEEEeec-hHHHhhccc-----CCC-CeEEEeCCCCC-CCC-------C
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFP----KLECTCFDL-PHVVNGLES-----DLV-NLKYVGGDMFK-AIS-------P 173 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~-----~~~-ri~~~~~d~~~-~~~-------~ 173 (259)
....+|.|-.||+|.+.....+... ++...|++. +.+...++. ..+ .+....+|-+. |.. .
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 3456999999999999988776542 377899997 666666665 112 34555555554 322 2
Q ss_pred ccEEeehhhhc--cCC--------------------hHHH-HHHHHHHHHhcccCCCCcEEEE
Q 041250 174 AYAVLLKWILL--DWN--------------------DEEC-VKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 174 ~D~~~~~~vlh--~~~--------------------d~~~-~~il~~~~~~L~p~~~gg~lli 213 (259)
||.++...-+. .|. .... ...++.+...|+| +|+.-|
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~---~g~aai 324 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP---GGRAAI 324 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC---CceEEE
Confidence 77666554331 121 1112 5678889999998 665443
No 453
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=52.61 E-value=25 Score=30.04 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=44.1
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecccc-ccCCCCCCCCceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKL-VSSGNNNDEEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~-~~~~~~~~~~~~y~~t~~~~~l~ 70 (259)
++.+|..+.+ ..|...-|+++++++..+++-+..+.. ++.--....+....+|+.++.|.
T Consensus 6 ~L~~f~~v~e---~~s~s~AA~~L~isQpavS~~I~~LE~~lg~~LF~R~~r~~~lT~~G~~l~ 66 (300)
T PRK11074 6 SLEVVDAVAR---TGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTPAGEWFV 66 (300)
T ss_pred HHHHHHHHHH---hCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEEeCCCCceECccHHHHH
Confidence 5678888886 568888999999999999997766532 22100145677899999998663
No 454
>PRK06474 hypothetical protein; Provisional
Probab=52.57 E-value=3.9 Score=32.72 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=37.0
Q ss_pred HHHHHHcCcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCC
Q 041250 3 LKCAFQLGIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~ 51 (259)
|.-..++.|++.|...+++.|+.+|++.+ +++...++|-|+.+...+++
T Consensus 8 La~p~R~~Il~~L~~~~~~~ta~el~~~l~~is~aTvYrhL~~L~e~GLI 57 (178)
T PRK06474 8 LMHPVRMKICQVLMRNKEGLTPLELVKILKDVPQATLYRHLQTMVDSGIL 57 (178)
T ss_pred hCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCE
Confidence 44557888999998753459999999999 68888888877766555443
No 455
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=52.49 E-value=4.3 Score=24.67 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=22.3
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecc
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
+..+...+.+ +.|..+||+.+|+++..+.+++..-
T Consensus 7 R~~ii~l~~~---G~s~~~ia~~lgvs~~Tv~~w~kr~ 41 (50)
T PF13384_consen 7 RAQIIRLLRE---GWSIREIAKRLGVSRSTVYRWIKRY 41 (50)
T ss_dssp ---HHHHHHH---T--HHHHHHHHTS-HHHHHHHHT--
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 3445555553 7999999999999999999987653
No 456
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=52.06 E-value=62 Score=28.11 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=48.6
Q ss_pred ecCCc-hHHHHHHHHHCCCC-eEEEeechHH--Hhhccc-------CCCCeEEEeCCCCCCCCCccEEeehhhhccCC--
Q 041250 121 VGGGT-GTAAKAIAKAFPKL-ECTCFDLPHV--VNGLES-------DLVNLKYVGGDMFKAISPAYAVLLKWILLDWN-- 187 (259)
Q Consensus 121 vGgG~-G~~~~~l~~~~p~~-~~~~~D~~~~--~~~a~~-------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~-- 187 (259)
||+|. |......+...+-. +.+++|+.+- ...+.. ...++++..+| .+...++|++++..-.-.-+
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD-YSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC-HHHHCCCCEEEECCCCCCCCCC
Confidence 46655 44444444444333 5899997321 122221 22345555444 33556799998865432222
Q ss_pred -h----HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 188 -D----EECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 188 -d----~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
. ....++++++.+.++...|.++++++-
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 1 123456666666554333378877765
No 457
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=51.83 E-value=26 Score=30.63 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=35.1
Q ss_pred ecCCchHHHHHH----HHHCCCCeEEEeec---hHHHhhccc--CCCCeEEEeCCCCC
Q 041250 121 VGGGTGTAAKAI----AKAFPKLECTCFDL---PHVVNGLES--DLVNLKYVGGDMFK 169 (259)
Q Consensus 121 vGgG~G~~~~~l----~~~~p~~~~~~~D~---~~~~~~a~~--~~~ri~~~~~d~~~ 169 (259)
|-||.|.++..+ .+.+|+.+++++|. ..-.+..+. ..+|.+|+.+|+.+
T Consensus 5 VTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D 62 (340)
T COG1088 5 VTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICD 62 (340)
T ss_pred EecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccC
Confidence 557888887766 45789988999995 222222222 56799999999996
No 458
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.57 E-value=99 Score=23.02 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=52.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCC----CccEEeehhhhccCChH
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAIS----PAYAVLLKWILLDWNDE 189 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D~~~~~~vlh~~~d~ 189 (259)
+..+|++||-|.=......++++ +..++..|+.+- . ....++++.-|.++|.- ++|+|..-. +..
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~---a~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--T---APEGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--c---CcccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 35699999988776666655555 378899998433 1 23688999999999632 578766542 344
Q ss_pred HHHHHHHHHHHhcc
Q 041250 190 ECVKILKKCKEAIT 203 (259)
Q Consensus 190 ~~~~il~~~~~~L~ 203 (259)
+....+-+++++.+
T Consensus 82 El~~~ildva~aVg 95 (129)
T COG1255 82 ELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHhhC
Confidence 45555556666664
No 459
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=51.53 E-value=6.7 Score=30.21 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHcCCCccccccceecccc
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKL 47 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~ 47 (259)
|+.|.+|||-+.|+..+++-.-|....+
T Consensus 5 Ga~T~eELA~~FGvttRkvaStLa~~ta 32 (155)
T PF07789_consen 5 GAKTAEELAGKFGVTTRKVASTLAMVTA 32 (155)
T ss_pred CcccHHHHHHHhCcchhhhHHHHHHHHh
Confidence 8999999999999999888776655444
No 460
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=51.44 E-value=1.1e+02 Score=26.66 Aligned_cols=96 Identities=15% Similarity=0.051 Sum_probs=49.4
Q ss_pred CCCeEEEecCCchHHHHHHHH---HCCCCeEEEeec-hH-HHhhcccCCCCeEEEeC-CCCCCCCCccEEeehhhhccCC
Q 041250 114 GLNSLVDVGGGTGTAAKAIAK---AFPKLECTCFDL-PH-VVNGLESDLVNLKYVGG-DMFKAISPAYAVLLKWILLDWN 187 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~---~~p~~~~~~~D~-~~-~~~~a~~~~~ri~~~~~-d~~~~~~~~D~~~~~~vlh~~~ 187 (259)
...+|+-+|+| ..+..+++ ....-+++++|. ++ ..+.+++... ..... |..+....+|+++..-.--..
T Consensus 177 ~~~~V~ViGaG--~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--~~~~~~~~~~~l~~aDvVi~at~~~~~- 251 (311)
T cd05213 177 KGKKVLVIGAG--EMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--NAVPLDELLELLNEADVVISATGAPHY- 251 (311)
T ss_pred cCCEEEEECcH--HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--eEEeHHHHHHHHhcCCEEEECCCCCch-
Confidence 46789999874 44444333 322246888887 33 3445554222 22221 222224468998877432111
Q ss_pred hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 188 d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
..+++.+.+.. + ++..+++|...|.+-
T Consensus 252 ----~~~~~~~~~~~-~---~~~~~viDlavPrdi 278 (311)
T cd05213 252 ----AKIVERAMKKR-S---GKPRLIVDLAVPRDI 278 (311)
T ss_pred ----HHHHHHHHhhC-C---CCCeEEEEeCCCCCC
Confidence 23344443332 2 355678888776653
No 461
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=51.36 E-value=27 Score=26.36 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=17.4
Q ss_pred hhhhhhhhhccCccccCHHHHHHHHhc
Q 041250 232 LFFEMFMMVLLTGTERDEKEWAKIFAD 258 (259)
Q Consensus 232 ~~~d~~m~~~~~g~~rt~~e~~~ll~~ 258 (259)
.+-|+.--+..+|+.++.++|+++|.+
T Consensus 46 ~l~dIs~qv~~~G~k~~~e~WK~~~~~ 72 (127)
T PF05772_consen 46 MLGDISRQVEWNGRKLDPEDWKELFTA 72 (127)
T ss_dssp HHHHHHHH--BTTB---HHHHHHHHHH
T ss_pred HHHHHHHHhHhcCccCCHHHHHHHHHH
Confidence 455666666679999999999999975
No 462
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=51.25 E-value=4.2 Score=24.37 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHcCCCccccccce
Q 041250 20 KPMTLNELVSALTINLSKTQCFF 42 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll 42 (259)
.+.|..+||+.+|.++..+.+.+
T Consensus 19 ~G~s~~~IA~~lg~s~sTV~rel 41 (44)
T PF13936_consen 19 QGMSIREIAKRLGRSRSTVSREL 41 (44)
T ss_dssp S---HHHHHHHTT--HHHHHHHH
T ss_pred cCCCHHHHHHHHCcCcHHHHHHH
Confidence 56999999999999998877643
No 463
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=51.14 E-value=3.2 Score=27.65 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecC
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLT 63 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t 63 (259)
-+.|-++||..+|++...+.+.|..+.--+++ +...+.+.+.
T Consensus 27 ~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I--~~~~~~i~I~ 68 (76)
T PF13545_consen 27 LPLTQEEIADMLGVSRETVSRILKRLKDEGII--EVKRGKIIIL 68 (76)
T ss_dssp EESSHHHHHHHHTSCHHHHHHHHHHHHHTTSE--EEETTEEEES
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE--EEcCCEEEEC
Confidence 47899999999999999999999887665543 3344555544
No 464
>PRK08818 prephenate dehydrogenase; Provisional
Probab=50.85 E-value=66 Score=28.98 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=42.0
Q ss_pred CeEEEecC-Cc--hHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHH
Q 041250 116 NSLVDVGG-GT--GTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECV 192 (259)
Q Consensus 116 ~~vlDvGg-G~--G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~ 192 (259)
.+|.=||+ |- |.++..+.+. .+.+++++|.. +.. ..+..+...++|+|+++ .|-....
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~----------d~~---~~~~~~~v~~aDlVila-----vPv~~~~ 65 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPA----------DPG---SLDPATLLQRADVLIFS-----APIRHTA 65 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCC----------ccc---cCCHHHHhcCCCEEEEe-----CCHHHHH
Confidence 46777776 42 4444445444 36789999951 000 00111123468999988 5667778
Q ss_pred HHHHHHHHh---ccc
Q 041250 193 KILKKCKEA---ITR 204 (259)
Q Consensus 193 ~il~~~~~~---L~p 204 (259)
++++++... |+|
T Consensus 66 ~~l~~l~~~~~~l~~ 80 (370)
T PRK08818 66 ALIEEYVALAGGRAA 80 (370)
T ss_pred HHHHHHhhhhcCCCC
Confidence 889988875 677
No 465
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=50.81 E-value=1.2e+02 Score=28.19 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=57.9
Q ss_pred cCCCCeEEEecC-CchHHHHHHHHHCC-------CC--eEEEeechHHHhh--ccc-------CCCCeEEEeCCCCCCCC
Q 041250 112 FEGLNSLVDVGG-GTGTAAKAIAKAFP-------KL--ECTCFDLPHVVNG--LES-------DLVNLKYVGGDMFKAIS 172 (259)
Q Consensus 112 ~~~~~~vlDvGg-G~G~~~~~l~~~~p-------~~--~~~~~D~~~~~~~--a~~-------~~~ri~~~~~d~~~~~~ 172 (259)
++++.+|.=||+ |.=....++.-... ++ +.+.+|..+-... +.+ ...++.+..+| .+...
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~-ye~~k 175 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDP-YEVFQ 175 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCC-HHHhC
Confidence 566789999998 77333333222222 33 5777786221111 111 12345444443 34566
Q ss_pred CccEEeehhhhccCCh-------HHHHHHHHHHHHhccc-CCCCcEEEEEee
Q 041250 173 PAYAVLLKWILLDWND-------EECVKILKKCKEAITR-DGKKRKVIIKDM 216 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d-------~~~~~il~~~~~~L~p-~~~gg~lli~e~ 216 (259)
++|++++..-.-.-+. +...+|++++...++. .+|.++++++-.
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 7999988764432222 2346778888777755 344898888763
No 466
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=50.74 E-value=6 Score=30.27 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=27.8
Q ss_pred cchhhhcCC-CCCCHHHHHHHcCCCccccccceeccc
Q 041250 11 IPDIINKHG-KPMTLNELVSALTINLSKTQCFFAQQK 46 (259)
Q Consensus 11 lf~~L~~~~-~~~t~~elA~~~~~~~~~l~~ll~~~~ 46 (259)
|-+.|.++. ..+|+.+|++.+|+++..+.+|++...
T Consensus 35 V~~yLr~~p~~~ati~eV~e~tgVs~~~I~~~IreGR 71 (137)
T TIGR03826 35 VYKFLRKHENRQATVSEIVEETGVSEKLILKFIREGR 71 (137)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCcCHHHHHHHHHcCC
Confidence 445666542 238999999999999999999888744
No 467
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=50.73 E-value=68 Score=28.97 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=65.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc------CCC-CeEEEeCCCCCC---CC-CccEEee
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES------DLV-NLKYVGGDMFKA---IS-PAYAVLL 179 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~------~~~-ri~~~~~d~~~~---~~-~~D~~~~ 179 (259)
.+..++||.=+|+|.-+++.+++.++. +++.=|+ |++++..++ ..+ +++....|...- .. .||+|=+
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 456789999999999999999996655 6888899 888877765 334 788888887651 22 4887755
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
-- +.- ....|..+.++++. ||.|.|.-+
T Consensus 128 DP----fGS--p~pfldsA~~~v~~---gGll~vTaT 155 (377)
T PF02005_consen 128 DP----FGS--PAPFLDSALQAVKD---GGLLCVTAT 155 (377)
T ss_dssp ------SS----HHHHHHHHHHEEE---EEEEEEEE-
T ss_pred CC----CCC--ccHhHHHHHHHhhc---CCEEEEecc
Confidence 43 221 35789999999998 888877765
No 468
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=50.36 E-value=1.3e+02 Score=27.20 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=58.1
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeech----HHHhhccc---CCCCeEEEeCCCCCCCC-CccEEeehhhhccCCh
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDLP----HVVNGLES---DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWND 188 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~----~~~~~a~~---~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d 188 (259)
+|+=++=..|.++..++...|. .+.|.- .....++. ..+.+++. +...+.| .+|+|++. ||.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~~~~~d~vl~~-----~PK 116 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESSVKFL--DSTADYPQQPGVVLIK-----VPK 116 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCcccceee--cccccccCCCCEEEEE-----eCC
Confidence 7999999999999999976553 345641 11112221 12234444 4444555 48988876 553
Q ss_pred --HHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 189 --EECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 189 --~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
......|..+++.+.| |+.+++.+...
T Consensus 117 ~~~~l~~~l~~l~~~l~~---~~~ii~g~~~k 145 (378)
T PRK15001 117 TLALLEQQLRALRKVVTS---DTRIIAGAKAR 145 (378)
T ss_pred CHHHHHHHHHHHHhhCCC---CCEEEEEEecC
Confidence 4566789999999999 88887666543
No 469
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=50.21 E-value=1.1e+02 Score=26.64 Aligned_cols=97 Identities=8% Similarity=0.029 Sum_probs=46.7
Q ss_pred eEEEecCCc-hHHHHHHHHHCCCCeEEEeechHHHhhccc-----------CCCCeEEEeCCCCCCCCCccEEeehhhhc
Q 041250 117 SLVDVGGGT-GTAAKAIAKAFPKLECTCFDLPHVVNGLES-----------DLVNLKYVGGDMFKAISPAYAVLLKWILL 184 (259)
Q Consensus 117 ~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh 184 (259)
+|.=||+|. |.-....+......+++++|..+-+..++. ...++++ ..|+. ...++|++++.--.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~~-~~~~aDiVIitag~p 80 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG-TNNYA-DTANSDIVVITAGLP 80 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe-cCCHH-HhCCCCEEEEcCCCC
Confidence 577788877 333333333332237999998322333221 1123332 24543 355689888874321
Q ss_pred cCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 185 DWND-------EECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 185 ~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.-++ ....++++++.+.+.+..|.+.++++-
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~t 118 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1111 123455555544443221257666654
No 470
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=50.10 E-value=38 Score=29.15 Aligned_cols=95 Identities=11% Similarity=0.175 Sum_probs=60.7
Q ss_pred eEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeCCCCC----CCC-CccEEeehhhhccCC--
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFK----AIS-PAYAVLLKWILLDWN-- 187 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~----~~~-~~D~~~~~~vlh~~~-- 187 (259)
+++|+=||.|.+...+.+.. .+ +..+|+ +.+++..+...+ ....+|+.+ .+| .+|+++...-+..++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~fS~a 77 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPKDVDLLIGGPPCQGFSIA 77 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHHT-SEEEEE---TTTSTT
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--ccccccccccccccccccceEEEeccCCceEecc
Confidence 68999999999999999985 44 567787 676666665333 888888887 256 599998887665553
Q ss_pred -------hHHHHHHHHHHH---HhcccCCCCcEEEEEeeeecCC
Q 041250 188 -------DEECVKILKKCK---EAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 188 -------d~~~~~il~~~~---~~L~p~~~gg~lli~e~~~~~~ 221 (259)
|+. -.++.++. +.++| ++++.|.|..--
T Consensus 78 g~~~~~~d~r-~~L~~~~~~~v~~~~P-----k~~~~ENV~~l~ 115 (335)
T PF00145_consen 78 GKRKGFDDPR-NSLFFEFLRIVKELKP-----KYFLLENVPGLL 115 (335)
T ss_dssp STHHCCCCHT-TSHHHHHHHHHHHHS------SEEEEEEEGGGG
T ss_pred cccccccccc-chhhHHHHHHHhhccc-----eEEEecccceee
Confidence 221 12333333 44566 678889986543
No 471
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=49.77 E-value=6.4 Score=31.86 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=37.2
Q ss_pred HHHcCcchhhhc----CCCCCCHHHHHHHcCCC-ccccccceeccccccCCCCCCCCcee
Q 041250 6 AFQLGIPDIINK----HGKPMTLNELVSALTIN-LSKTQCFFAQQKLVSSGNNNDEEQGY 60 (259)
Q Consensus 6 a~~l~lf~~L~~----~~~~~t~~elA~~~~~~-~~~l~~ll~~~~~~~~~~~~~~~~~y 60 (259)
..+..|++.|.+ .+-+.|+.|||+.+|++ +..+.+.|..|...+++ +.+++.|
T Consensus 6 ~~q~~iL~~l~~~~~~~~~~~~~~ela~~~~~~s~~tv~~~l~~L~~~g~i--~~~~~~~ 63 (199)
T TIGR00498 6 ARQQEVLDLIRAHIESTGYPPSIREIARAVGLRSPSAAEEHLKALERKGYI--ERDPGKP 63 (199)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCChHHHHHHHHHHHHCCCE--ecCCCCC
Confidence 345556666653 23568999999999998 88888888887776654 4444444
No 472
>PRK07680 late competence protein ComER; Validated
Probab=49.75 E-value=78 Score=26.84 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=43.6
Q ss_pred EEEecCCc--hHHHHHHHHHC-CC-CeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHH
Q 041250 118 LVDVGGGT--GTAAKAIAKAF-PK-LECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECV 192 (259)
Q Consensus 118 vlDvGgG~--G~~~~~l~~~~-p~-~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~ 192 (259)
|.=||+|. +.++..+.+.. .+ -.+++.|. ++..+...+....+... .|..+-...+|++++. .++....
T Consensus 3 I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDiVila-----v~p~~~~ 76 (273)
T PRK07680 3 IGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA-KTIEEVISQSDLIFIC-----VKPLDIY 76 (273)
T ss_pred EEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE-CCHHHHHHhCCEEEEe-----cCHHHHH
Confidence 55577665 33444444432 11 25788887 43333332211233322 2222212358988877 3666677
Q ss_pred HHHHHHHHhccc
Q 041250 193 KILKKCKEAITR 204 (259)
Q Consensus 193 ~il~~~~~~L~p 204 (259)
.+++.+...+++
T Consensus 77 ~vl~~l~~~l~~ 88 (273)
T PRK07680 77 PLLQKLAPHLTD 88 (273)
T ss_pred HHHHHHHhhcCC
Confidence 888988888877
No 473
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=49.38 E-value=1.3e+02 Score=26.36 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=38.3
Q ss_pred CeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHH-----hhccc---CCCCeEEEe-CCCCCCCCCccEEeeh
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVV-----NGLES---DLVNLKYVG-GDMFKAISPAYAVLLK 180 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~-----~~a~~---~~~ri~~~~-~d~~~~~~~~D~~~~~ 180 (259)
.+|.=||+|+=..+.+..-..+++ .++++|+ ++.. +.... .....++.. +|+ +...++|+++..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t 81 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT 81 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence 578999988854555554445564 7999998 4422 11111 122345554 554 456679999884
No 474
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=49.26 E-value=6.3 Score=26.15 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.1
Q ss_pred CCCHHHHHHHcCCCccccccceecc
Q 041250 21 PMTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 21 ~~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
+.|+++||+.+|+++..+.++|...
T Consensus 1 ~~~~~~la~~~~~s~~~l~~~f~~~ 25 (84)
T smart00342 1 PLTLEDLAEALGMSPRHLQRLFKKE 25 (84)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4789999999999999999988764
No 475
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=49.14 E-value=6.7 Score=28.17 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHcCCCccccccceecc
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
.+.|+++||+.++++++.+.|+|...
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~f~~~ 45 (107)
T PRK10219 20 QPLNIDVVAKKSGYSKWYLQRMFRTV 45 (107)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999999988764
No 476
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=49.00 E-value=22 Score=27.06 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=19.4
Q ss_pred EecCCch--HHHHHHH--HHCCCCeEEEeec-hHHHh
Q 041250 120 DVGGGTG--TAAKAIA--KAFPKLECTCFDL-PHVVN 151 (259)
Q Consensus 120 DvGgG~G--~~~~~l~--~~~p~~~~~~~D~-~~~~~ 151 (259)
|||++.| .....+. ...|..+++.++- |...+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~ 37 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFE 37 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHH
Confidence 8999999 5555554 4678889999997 65543
No 477
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=48.56 E-value=5.8 Score=27.11 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=31.0
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS 49 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~ 49 (259)
|=|+|..+ |-+++.+||..++++++.++-.|..+...+
T Consensus 7 lRd~l~~~-gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kG 44 (78)
T PRK15431 7 VRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_pred HHHHHHHc-CcccHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34677775 899999999999999999998777665544
No 478
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=48.46 E-value=1.7e+02 Score=25.27 Aligned_cols=98 Identities=17% Similarity=0.105 Sum_probs=50.5
Q ss_pred eEEEecCCc-hHHHHHHHHHCCC-CeEEEeec-hHHHh-hccc-------CCCCeEEEeCCCCCCCCCccEEeehhhhcc
Q 041250 117 SLVDVGGGT-GTAAKAIAKAFPK-LECTCFDL-PHVVN-GLES-------DLVNLKYVGGDMFKAISPAYAVLLKWILLD 185 (259)
Q Consensus 117 ~vlDvGgG~-G~~~~~l~~~~p~-~~~~~~D~-~~~~~-~a~~-------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~ 185 (259)
+|.=||+|. |......+....- -+++++|. ++..+ .+.. ...++.+..+++ +...++|++++.--.-.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~~ 80 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAPQ 80 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCCC
Confidence 566678765 3333332333332 36899997 33322 2222 123344444333 23457999988753321
Q ss_pred CC---h----HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 186 WN---D----EECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 186 ~~---d----~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
-+ . ....++++++.+.++...|.+.++++-
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11 1 224567777777665433478777665
No 479
>PRK06545 prephenate dehydrogenase; Validated
Probab=48.42 E-value=84 Score=27.99 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=20.7
Q ss_pred CCccEEeehhhhccCChHHHHHHHHHHHH-hccc
Q 041250 172 SPAYAVLLKWILLDWNDEECVKILKKCKE-AITR 204 (259)
Q Consensus 172 ~~~D~~~~~~vlh~~~d~~~~~il~~~~~-~L~p 204 (259)
..+|+|+++ .|......+++++.. .++|
T Consensus 59 ~~aDlVila-----vP~~~~~~vl~~l~~~~l~~ 87 (359)
T PRK06545 59 AEADLIVLA-----VPVDATAALLAELADLELKP 87 (359)
T ss_pred cCCCEEEEe-----CCHHHHHHHHHHHhhcCCCC
Confidence 358999988 455566788888887 3777
No 480
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=48.31 E-value=1.9e+02 Score=25.28 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=53.7
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC-----CCCC---CC---CCcc---
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG-----DMFK---AI---SPAY--- 175 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~-----d~~~---~~---~~~D--- 175 (259)
.....+|+=.|+|. |..+..+++.. +.++++.|. ++-.+.+++......+... |+.+ .. .++|
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 45567888888765 77778888877 457888886 6666666652221111111 1111 01 1244
Q ss_pred -EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 176 -AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 176 -~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+++-. -... ..++...+.+++ ||+++++...
T Consensus 243 d~v~d~-----~g~~---~~~~~~~~~l~~---~G~iv~~G~~ 274 (349)
T TIGR03201 243 WKIFEC-----SGSK---PGQESALSLLSH---GGTLVVVGYT 274 (349)
T ss_pred CEEEEC-----CCCh---HHHHHHHHHHhc---CCeEEEECcC
Confidence 33311 1111 356667778898 9999888754
No 481
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=48.17 E-value=13 Score=32.45 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=67.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehhhh--
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKWIL-- 183 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~vl-- 183 (259)
...|+|+=.|-|.+..-+.-....-.+..+|. |..++..++ ..+|+..+.+|-..+-| .+|=|.+.-+-
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLlPSs 274 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLLPSS 274 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecccccc
Confidence 47899999999999985444444456899998 888877665 56888888888877554 37766655322
Q ss_pred -ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 184 -LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 184 -h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
-.|+- +.++|+|. .||.+-|+|.+-.++
T Consensus 275 e~~W~~---------A~k~Lk~e-ggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 275 EQGWPT---------AIKALKPE-GGSILHIHENVKDSD 303 (351)
T ss_pred ccchHH---------HHHHhhhc-CCcEEEEeccccccc
Confidence 23432 34556773 144888888887766
No 482
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=48.15 E-value=7.9 Score=35.32 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHh
Q 041250 19 GKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNA 65 (259)
Q Consensus 19 ~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~ 65 (259)
++|.|.+||+++++++++.++++++.+...+++. +.+++.|.+...
T Consensus 308 g~~~t~~~La~~l~~~~~~v~~iL~~L~~agLI~-~~~~g~~~l~rd 353 (412)
T PRK04214 308 GKALDVDEIRRLEPMGYDELGELLCELARIGLLR-RGERGQWVLARD 353 (412)
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCeE-ecCCCceEecCC
Confidence 4789999999999999999999999887776552 344456877644
No 483
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=48.12 E-value=10 Score=24.00 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=24.9
Q ss_pred CCHHHHHHHcCCCccccccceeccccccCC
Q 041250 22 MTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 22 ~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.|..+||+.+++++..+.+.+..+...+++
T Consensus 26 ~~~~~la~~~~is~~~v~~~l~~L~~~G~i 55 (66)
T cd07377 26 PSERELAEELGVSRTTVREALRELEAEGLV 55 (66)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 459999999999999999988877665544
No 484
>PRK11524 putative methyltransferase; Provisional
Probab=47.84 E-value=30 Score=29.77 Aligned_cols=41 Identities=7% Similarity=-0.026 Sum_probs=34.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 155 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 155 (259)
.....|||-=||+|..+.+..+. +-+++++|+ ++-++.|++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence 34678999999999999988887 567999998 888887775
No 485
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=47.37 E-value=23 Score=29.75 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=45.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeC----CCCCC-CC---CccEE
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGG----DMFKA-IS---PAYAV 177 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~----d~~~~-~~---~~D~~ 177 (259)
...++||||-|.-..=-.+-..--+.++++-|+ +..++.|+. ....|+.... -+|.. .. .||+.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 457899999876543222222222568999998 777777665 3344555433 23331 22 39999
Q ss_pred eehhhhccCC
Q 041250 178 LLKWILLDWN 187 (259)
Q Consensus 178 ~~~~vlh~~~ 187 (259)
+++--+|.--
T Consensus 158 lCNPPFh~s~ 167 (292)
T COG3129 158 LCNPPFHDSA 167 (292)
T ss_pred ecCCCcchhH
Confidence 9999998654
No 486
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=47.26 E-value=8.2 Score=35.61 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=28.9
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceecc
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
|...|.+ ||.|+.|||+.+|++...+++-|.++
T Consensus 5 ~~~~L~~--g~~~~~eL~~~l~~sq~~~s~~L~~L 37 (442)
T PRK09775 5 LTTLLLQ--GPLSAAELAARLGVSQATLSRLLAAL 37 (442)
T ss_pred HHHHHhc--CCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 4556776 89999999999999999999988886
No 487
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=47.00 E-value=7.4 Score=29.10 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHcCCCccccccceecc
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
.+.|+++||+.+|+++..+.|+|...
T Consensus 24 ~~~sl~~lA~~~g~S~~~l~r~Fk~~ 49 (127)
T PRK11511 24 SPLSLEKVSERSGYSKWHLQRMFKKE 49 (127)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 57999999999999999999999865
No 488
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=46.99 E-value=18 Score=32.99 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=47.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC-----CCCCccEEeehhhhccCChH
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-----AISPAYAVLLKWILLDWNDE 189 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-----~~~~~D~~~~~~vlh~~~d~ 189 (259)
.|+=||||...+..++..+..+.+++++|. +.+-..... ...|+.+...+.-. ..+ -+--++..+++.|+.+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~-~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYG-RNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-T-BTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcc-cchHHHHHHHhcCCHH
Confidence 477899999988888877777899999998 444333332 45788887733321 111 1223456788888888
Q ss_pred HHHHHHHHH
Q 041250 190 ECVKILKKC 198 (259)
Q Consensus 190 ~~~~il~~~ 198 (259)
+...++.+.
T Consensus 81 d~~~ff~~~ 89 (409)
T PF03486_consen 81 DLIAFFEEL 89 (409)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 777777765
No 489
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=46.77 E-value=1.4e+02 Score=23.44 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=62.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC--CC-----CccEEeehhhhcc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA--IS-----PAYAVLLKWILLD 185 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~--~~-----~~D~~~~~~vlh~ 185 (259)
.+..+|+=|||=+-.....- ...|+.++.++|...--.. ..+. .|+--|+.+| +| .+|+|++---+
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~---~~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF-- 96 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQ---FGGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF-- 96 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHh---cCCc-ceEECCCCChhhhhhhcCCCceEEEECCCC--
Confidence 44578999998876655543 3567888999997433332 1223 5666677663 33 48999988766
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
++++-..+..+.++-.+++ +++|+++....
T Consensus 97 l~~ec~~k~a~ti~~L~k~---~~kii~~Tg~~ 126 (162)
T PF10237_consen 97 LSEECLTKTAETIRLLLKP---GGKIILCTGEE 126 (162)
T ss_pred CCHHHHHHHHHHHHHHhCc---cceEEEecHHH
Confidence 5555444555555555677 88998887543
No 490
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=46.70 E-value=5.3 Score=26.84 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHcCCCccccccceeccc
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQK 46 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~ 46 (259)
..-|.+|||+.+|+++..+..++.+..
T Consensus 19 r~Pt~eEiA~~lgis~~~v~~~l~~~~ 45 (78)
T PF04539_consen 19 REPTDEEIAEELGISVEEVRELLQASR 45 (78)
T ss_dssp S--BHHHHHHHHTS-HHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHcccHHHHHHHHHhCC
Confidence 678999999999999999999887644
No 491
>PRK05638 threonine synthase; Validated
Probab=46.30 E-value=8.6 Score=35.43 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcC--CCccccccceeccccccCCCC---CCCCceeecCHhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALT--INLSKTQCFFAQQKLVSSGNN---NDEEQGYVLTNASKLL 69 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~--~~~~~l~~ll~~~~~~~~~~~---~~~~~~y~~t~~~~~l 69 (259)
.++.|+..|.+ ++.+..||++.++ +++..+++.|+.|...+++.. +...-.|++|+.++.+
T Consensus 372 ~r~~IL~~L~~--~~~~~~el~~~l~~~~s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~ 437 (442)
T PRK05638 372 TKLEILKILSE--REMYGYEIWKALGKPLKYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRL 437 (442)
T ss_pred hHHHHHHHHhh--CCccHHHHHHHHcccCCcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHH
Confidence 46778889987 7999999999998 788899988887766554421 1123359999988743
No 492
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=46.16 E-value=24 Score=32.74 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=52.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEE------Eeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccC
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECT------CFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDW 186 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~------~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~ 186 (259)
...+|+=||||+=..+.++--+-.+++++ ++|. +...+.|++ +.. ...+..+-.+.+|+|++. .
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~--dGF--~v~~~~Ea~~~ADvVviL-----l 105 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE--NGF--KVGTYEELIPQADLVINL-----T 105 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh--cCC--ccCCHHHHHHhCCEEEEc-----C
Confidence 35899999999766555444343344444 2222 122222221 111 222322234579998876 6
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
||.....+.+++...|+| |..|....-
T Consensus 106 PDt~q~~v~~~i~p~LK~---Ga~L~fsHG 132 (487)
T PRK05225 106 PDKQHSDVVRAVQPLMKQ---GAALGYSHG 132 (487)
T ss_pred ChHHHHHHHHHHHhhCCC---CCEEEecCC
Confidence 776666778999999999 777765543
No 493
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=46.09 E-value=99 Score=27.18 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=60.8
Q ss_pred cCCCCeEEEec--CCchHHHHHHHHHCCCCeEEEeechHHHhhccc-CCC-CeEEEeCCCCCC---C-C--CccEEeehh
Q 041250 112 FEGLNSLVDVG--GGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-DLV-NLKYVGGDMFKA---I-S--PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvG--gG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~-ri~~~~~d~~~~---~-~--~~D~~~~~~ 181 (259)
+....+||=.| ||-|.++++|+++.-...++..--++-.+.+++ ..+ -+.+...|+.+. . . ++|+++-.
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~- 218 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDT- 218 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEEC-
Confidence 55567788777 788899999999986533444444555555555 333 233455555542 1 1 48887755
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
... ..+.+..+.|++ +|+++.+-...
T Consensus 219 ----vG~----~~~~~~l~~l~~---~G~lv~ig~~~ 244 (326)
T COG0604 219 ----VGG----DTFAASLAALAP---GGRLVSIGALS 244 (326)
T ss_pred ----CCH----HHHHHHHHHhcc---CCEEEEEecCC
Confidence 222 356667788898 89998888765
No 494
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=46.08 E-value=6.2 Score=24.71 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=24.0
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCcccccccee
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFA 43 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~ 43 (259)
-++.|.+.+.. |+ +..+||+..|++...++.++.
T Consensus 11 eK~~iI~~~e~--g~-s~~~ia~~fgv~~sTv~~I~K 44 (53)
T PF04218_consen 11 EKLEIIKRLEE--GE-SKRDIAREFGVSRSTVSTILK 44 (53)
T ss_dssp HHHHHHHHHHC--TT--HHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHc--CC-CHHHHHHHhCCCHHHHHHHHH
Confidence 34566777775 55 999999999999998887664
No 495
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=46.03 E-value=1.6e+02 Score=23.93 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=54.0
Q ss_pred CCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEE--EeCCCCC-----CCCCccEEeehhhh
Q 041250 113 EGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKY--VGGDMFK-----AISPAYAVLLKWIL 183 (259)
Q Consensus 113 ~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~--~~~d~~~-----~~~~~D~~~~~~vl 183 (259)
....+|+..|+|. |..+..+++... .++++.+. ++..+.+++......+ ...+... ...++|+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~--- 208 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA--- 208 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC---
Confidence 5567899999985 777777887764 67888887 4444444432111111 0011110 11247887643
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.+.. ..+..+.+.|++ +|+++.+...
T Consensus 209 --~~~~---~~~~~~~~~l~~---~G~~v~~~~~ 234 (271)
T cd05188 209 --VGGP---ETLAQALRLLRP---GGRIVVVGGT 234 (271)
T ss_pred --CCCH---HHHHHHHHhccc---CCEEEEEccC
Confidence 2221 346667778888 8998877654
No 496
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=45.93 E-value=1.3e+02 Score=26.18 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=38.8
Q ss_pred eEEEecCCchHHHHHHHHHC---CCCeEEEeech-HHHhhcccCCCCeEEEeCCCCCC---C----CCccEEe
Q 041250 117 SLVDVGGGTGTAAKAIAKAF---PKLECTCFDLP-HVVNGLESDLVNLKYVGGDMFKA---I----SPAYAVL 178 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~~-~~~~~a~~~~~ri~~~~~d~~~~---~----~~~D~~~ 178 (259)
+|| |=||+|.++..++++. .+.+++++|.. ....... ...+++++.+|+.++ . .++|+|+
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLV-NHPRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhc-cCCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 344 6678999999988864 34688888873 2222111 235799999999732 1 2478766
No 497
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=45.84 E-value=7.1 Score=24.07 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHcCCCccccccceec
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQ 44 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~ 44 (259)
...|..|+|+.+|+++..++++...
T Consensus 8 ~gls~~~la~~~gis~~~i~~~~~g 32 (55)
T PF01381_consen 8 KGLSQKELAEKLGISRSTISRIENG 32 (55)
T ss_dssp TTS-HHHHHHHHTS-HHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCcchhHHHhcC
Confidence 5799999999999999999987765
No 498
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=45.39 E-value=1.5e+02 Score=25.24 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=43.8
Q ss_pred eEEEecCCchHHHH--HHHHHCCCCeEEEeechHHHhhcccCCCCeEEE------eCCCCC---C-CCCccEEeehhhhc
Q 041250 117 SLVDVGGGTGTAAK--AIAKAFPKLECTCFDLPHVVNGLESDLVNLKYV------GGDMFK---A-ISPAYAVLLKWILL 184 (259)
Q Consensus 117 ~vlDvGgG~G~~~~--~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~------~~d~~~---~-~~~~D~~~~~~vlh 184 (259)
+|+=+|+|.-.... .+++. +..+++++.++.++..++..-+++.. .....+ + ...+|++++.---
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA--GRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 46667777644333 33443 44677778755554444311111111 111111 1 2358888776322
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.....+++.+...+.+ +..++.+
T Consensus 79 ----~~~~~~~~~l~~~~~~---~~~ii~~ 101 (305)
T PRK12921 79 ----YQLDAAIPDLKPLVGE---DTVIIPL 101 (305)
T ss_pred ----cCHHHHHHHHHhhcCC---CCEEEEe
Confidence 2245677788777776 5544433
No 499
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.18 E-value=1.9e+02 Score=24.75 Aligned_cols=90 Identities=11% Similarity=0.113 Sum_probs=52.0
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------C----------CCCeEEEeCCCCCCCC
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------D----------LVNLKYVGGDMFKAIS 172 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~----------~~ri~~~~~d~~~~~~ 172 (259)
.+|.=||+|.=..+++..-...+.+++++|. ++.++.+.+ . ..++++. .|. +...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~~ 82 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-EDLA 82 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HHhc
Confidence 4677788886554444433334678999998 665554321 0 0234432 232 3344
Q ss_pred CccEEeehhhhccCCh--HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 PAYAVLLKWILLDWND--EECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d--~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++|+|+.+ .++ +....+++++...++| +.+++.+.
T Consensus 83 ~aD~Viea-----vpe~~~~k~~~~~~l~~~~~~----~~ii~s~t 119 (292)
T PRK07530 83 DCDLVIEA-----ATEDETVKRKIFAQLCPVLKP----EAILATNT 119 (292)
T ss_pred CCCEEEEc-----CcCCHHHHHHHHHHHHhhCCC----CcEEEEcC
Confidence 68988876 332 2234678888888888 45555443
No 500
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=45.06 E-value=1.5e+02 Score=25.74 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=47.9
Q ss_pred ecCCc-hHHHHHHHHHCCCC-eEEEeec-hHHH-hhccc------CCCCeEEEe-CCCCCCCCCccEEeehhhhccC---
Q 041250 121 VGGGT-GTAAKAIAKAFPKL-ECTCFDL-PHVV-NGLES------DLVNLKYVG-GDMFKAISPAYAVLLKWILLDW--- 186 (259)
Q Consensus 121 vGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~-~~a~~------~~~ri~~~~-~d~~~~~~~~D~~~~~~vlh~~--- 186 (259)
||+|. |......+...+-. +++++|. ++.+ ..+.. .....++.. .| .+...++|++++..-.-.-
T Consensus 4 iGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~~~~ 82 (300)
T cd00300 4 IGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRKPGE 82 (300)
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCCCCC
Confidence 67776 44444434444333 5899998 3222 22222 112334443 44 3355578998887533211
Q ss_pred Ch----HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 187 ND----EECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 187 ~d----~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+. .....+++++.+.++...|.|++++.-
T Consensus 83 ~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 83 TRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 11 124556666666665323378877665
Done!